Citrus Sinensis ID: 016020
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| 449449823 | 474 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.818 | 0.940 | 0.0 | |
| 449510979 | 477 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.813 | 0.940 | 0.0 | |
| 255557887 | 470 | conserved hypothetical protein [Ricinus | 0.979 | 0.825 | 0.932 | 0.0 | |
| 297820156 | 467 | hypothetical protein ARALYDRAFT_906825 [ | 0.979 | 0.830 | 0.909 | 0.0 | |
| 18410015 | 467 | transducin/WD40 domain-containing protei | 0.979 | 0.830 | 0.907 | 0.0 | |
| 224139426 | 473 | predicted protein [Populus trichocarpa] | 0.989 | 0.828 | 0.901 | 0.0 | |
| 147825153 | 481 | hypothetical protein VITISV_027347 [Viti | 0.979 | 0.806 | 0.902 | 0.0 | |
| 225448335 | 482 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.804 | 0.902 | 0.0 | |
| 297736651 | 464 | unnamed protein product [Vitis vinifera] | 0.979 | 0.836 | 0.902 | 0.0 | |
| 359486434 | 484 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.789 | 0.908 | 0.0 |
| >gi|449449823|ref|XP_004142664.1| PREDICTED: uncharacterized protein LOC101207987 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/388 (94%), Positives = 375/388 (96%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISASPRPCSGRR+LAKKR R DGFVNSVKKLQRREICSKRDRAFS+SNAQERFRNM
Sbjct: 3 GRRISASPRPCSGRRILAKKRPRVDGFVNSVKKLQRREICSKRDRAFSMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFL
Sbjct: 63 LMEEYDTHDPKGHCSPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSRTEFMTPSAFIFLYENQLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ +D WM G+ S
Sbjct: 363 YITSDQDLIISYCKADSDDHWMVGNAGS 390
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510979|ref|XP_004163828.1| PREDICTED: uncharacterized protein LOC101230142 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/388 (94%), Positives = 375/388 (96%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISASPRPCSGRR+LAKKR R DGFVNSVKKLQRREICSKRDRAFS+SNAQERFRNM
Sbjct: 3 GRRISASPRPCSGRRILAKKRPRVDGFVNSVKKLQRREICSKRDRAFSMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN RICFL
Sbjct: 63 LMEEYDTHDPKGHCSPVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNERICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSRTEFMTPSAFIFLYENQLFLTFR+RTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRDRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ +D WM G+ S
Sbjct: 363 YITSDQDLIISYCKADSDDHWMVGNAGS 390
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557887|ref|XP_002519972.1| conserved hypothetical protein [Ricinus communis] gi|223540736|gb|EEF42296.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/388 (93%), Positives = 375/388 (96%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRISA+PRPCSGRRVLAKKR RS+G +N+VKKLQRREI SK DRAF++SNAQERFRNM
Sbjct: 3 GRRISANPRPCSGRRVLAKKRQRSNGLMNTVKKLQRREISSKPDRAFTMSNAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN+RICFL
Sbjct: 63 LKEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI+RGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIKRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R+SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RASSHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKAE E+QWMEGS S
Sbjct: 363 YITSDQDLIISYCKAETEEQWMEGSAGS 390
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820156|ref|XP_002877961.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] gi|297323799|gb|EFH54220.1| hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/388 (90%), Positives = 371/388 (95%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRRV+AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRVVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ EDQW+EG+ S
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGS 390
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18410015|ref|NP_566994.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] gi|13430702|gb|AAK25973.1|AF360263_1 unknown protein [Arabidopsis thaliana] gi|16226834|gb|AAL16275.1|AF428345_1 AT3g54190/F24B22_150 [Arabidopsis thaliana] gi|14532904|gb|AAK64134.1| unknown protein [Arabidopsis thaliana] gi|332645676|gb|AEE79197.1| transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/388 (90%), Positives = 371/388 (95%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ EDQW+EG+ S
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGS 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139426|ref|XP_002323106.1| predicted protein [Populus trichocarpa] gi|222867736|gb|EEF04867.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/394 (90%), Positives = 372/394 (94%), Gaps = 2/394 (0%)
Query: 1 MEGLGRRISAS-PRPCSGRRVLA-KKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQE 58
MEG GRRISA+ PRPCSGRR+LA KKR RSDGF+NSVKKLQRREI SK DR+FSI+NAQE
Sbjct: 2 MEGSGRRISAANPRPCSGRRILAAKKRGRSDGFLNSVKKLQRREISSKSDRSFSITNAQE 61
Query: 59 RFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN 118
RFRNM L+EEYDTHDPKGHC VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN
Sbjct: 62 RFRNMRLMEEYDTHDPKGHCSMVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETN 121
Query: 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178
+RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYIRRGKPD+GF
Sbjct: 122 QRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGKPDAGFP 181
Query: 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI 238
LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD VQEIKISPGI
Sbjct: 182 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDTDVQEIKISPGI 241
Query: 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298
MLLI NRSS +VPLKILSIEDGT+LK F HLLHRNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 242 MLLILNRSSGYVPLKILSIEDGTILKDFKHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 301
Query: 299 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 358
DVR+ + EVSRT+FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD
Sbjct: 302 DVRHTGIREVSRTDFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 361
Query: 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSGNS 392
CNTNNIYITSDQDLIISYCKA+ +DQWMEG+ S
Sbjct: 362 CNTNNIYITSDQDLIISYCKADSDDQWMEGNAGS 395
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825153|emb|CAN75497.1| hypothetical protein VITISV_027347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/388 (90%), Positives = 369/388 (95%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 63 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 243 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ +D EG+ S
Sbjct: 363 YITSDQDLIISYCKADSDDPLSEGNAGS 390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448335|ref|XP_002266566.1| PREDICTED: uncharacterized protein LOC100263968 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/388 (90%), Positives = 369/388 (95%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 63
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 64 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 123
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 124 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 183
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 184 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 243
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 244 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 303
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 304 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 363
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ +D EG+ S
Sbjct: 364 YITSDQDLIISYCKADSDDPLSEGNAGS 391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736651|emb|CBI25522.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/388 (90%), Positives = 369/388 (95%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 63 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 243 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ +D EG+ S
Sbjct: 363 YITSDQDLIISYCKADSDDPLSEGNAGS 390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486434|ref|XP_002266694.2| PREDICTED: uncharacterized protein LOC100263968 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/382 (90%), Positives = 367/382 (96%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
G+RIS SPRP SGRRV+AKKR R+DGFVNSVKKLQRREICSKRDR+FS+S+AQERFRN+
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRNDGFVNSVKKLQRREICSKRDRSFSMSDAQERFRNIR 63
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
L EEYDTHDPKGHC VLPFL KR+K+IEIVAARDIVFALA SGVCAAFSRETN+RICFL
Sbjct: 64 LQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFL 123
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR+T+IEYIRRGKPD+GFALFESES
Sbjct: 124 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALFESES 183
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF
Sbjct: 184 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFT 243
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
++SSHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN+E
Sbjct: 244 KASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSE 303
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
L EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 304 LKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 363
Query: 365 YITSDQDLIISYCKAEPEDQWM 386
YITSDQDLIISYCKA+ +D ++
Sbjct: 364 YITSDQDLIISYCKADSDDPFV 385
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| TAIR|locus:2080305 | 467 | AT3G54190 "AT3G54190" [Arabido | 0.979 | 0.830 | 0.907 | 2.3e-190 | |
| TAIR|locus:2064201 | 467 | AT2G38630 "AT2G38630" [Arabido | 0.979 | 0.830 | 0.866 | 1.4e-181 |
| TAIR|locus:2080305 AT3G54190 "AT3G54190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1845 (654.5 bits), Expect = 2.3e-190, P = 2.3e-190
Identities = 352/388 (90%), Positives = 371/388 (95%)
Query: 5 GRRISASPRPCSGRRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMH 64
GRRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREI S++DRAFSIS AQERFRNM
Sbjct: 3 GRRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRREISSRKDRAFSISTAQERFRNMR 62
Query: 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFL 124
LVE+YDTHDPKGHC LPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRE+N+RICFL
Sbjct: 63 LVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRICFL 122
Query: 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184
NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST+IEYI RG+PD+GFALFESES
Sbjct: 123 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFESES 182
Query: 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN 244
LKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDK+VQEIKISPGIMLLIF
Sbjct: 183 LKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFK 242
Query: 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304
R++SHVPLKILSIEDGTVLK F HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE
Sbjct: 243 RAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 302
Query: 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI 364
LMEVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNNI
Sbjct: 303 LMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNNI 362
Query: 365 YITSDQDLIISYCKAEPEDQWMEGSGNS 392
YITSDQDLIISYCKA+ EDQW+EG+ S
Sbjct: 363 YITSDQDLIISYCKADTEDQWIEGNAGS 390
|
|
| TAIR|locus:2064201 AT2G38630 "AT2G38630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 337/389 (86%), Positives = 365/389 (93%)
Query: 5 GRRISASPRPCSG-RRVLAKKRVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNM 63
GRRI A+PRPCSG RRV+AKKR R DGFVNSVKKLQRREI S+ DRAFSIS AQERFRNM
Sbjct: 4 GRRIIANPRPCSGSRRVIAKKRSRPDGFVNSVKKLQRREISSRMDRAFSISTAQERFRNM 63
Query: 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF 123
LVE+YDTHDPKG+C LP L+KR+KVIEIVAARDIVFAL SGVCA+FSRETN+++CF
Sbjct: 64 RLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKKVCF 123
Query: 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183
LNVSPDEVIRSLFYNKNNDSLITVSVYASDN+SSLKCRST+IEYI RG+ D+GF LFESE
Sbjct: 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLFESE 183
Query: 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIF 243
SLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDK+VQEIKISPGIMLLIF
Sbjct: 184 SLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIMLLIF 243
Query: 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303
R++SHVPLKILSIEDGT+LK F+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA
Sbjct: 244 KRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303
Query: 304 ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNN 363
EL+EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNTNN
Sbjct: 304 ELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNTNN 363
Query: 364 IYITSDQDLIISYCKAEPEDQWMEGSGNS 392
IYITSDQDLIISYCKA+ EDQW+EG+ S
Sbjct: 364 IYITSDQDLIISYCKADTEDQWIEGNAGS 392
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 396 396 0.00096 117 3 11 22 0.49 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 616 (65 KB)
Total size of DFA: 261 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.67u 0.09s 37.76t Elapsed: 00:00:02
Total cpu time: 37.67u 0.09s 37.76t Elapsed: 00:00:02
Start: Fri May 10 04:13:37 2013 End: Fri May 10 04:13:39 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.62 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.53 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.49 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.42 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.37 | |
| PTZ00421 | 493 | coronin; Provisional | 99.31 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.31 | |
| PTZ00420 | 568 | coronin; Provisional | 99.3 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.23 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.22 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.17 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.12 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.1 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.08 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.05 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.02 | |
| PTZ00421 | 493 | coronin; Provisional | 99.01 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.99 | |
| PTZ00420 | 568 | coronin; Provisional | 98.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.92 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 98.9 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 98.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 98.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.82 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.8 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.79 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.79 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 98.78 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.77 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 98.75 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.74 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.69 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.67 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.63 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.61 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 98.61 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.6 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.6 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.56 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.55 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.53 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.53 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.46 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 98.46 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.45 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.44 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 98.42 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.41 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 98.41 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.31 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.3 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.29 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.27 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.23 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.22 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.2 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 98.15 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.15 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 98.14 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.13 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.08 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.06 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.05 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.04 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 98.03 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.01 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 98.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 98.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.84 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.84 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 97.83 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.83 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.79 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.78 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.74 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.7 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.66 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.64 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.64 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.63 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.63 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.62 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.61 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.61 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.58 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 97.56 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.56 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.55 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 97.51 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.5 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.48 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.46 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.46 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.44 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.38 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.35 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.34 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 97.33 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 97.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.32 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.32 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.32 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.3 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.29 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.28 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.27 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.27 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.24 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 97.24 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.23 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.22 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.2 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 97.18 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.17 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.16 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.16 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.15 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.13 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.07 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.04 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.04 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 97.03 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.97 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 96.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.86 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.85 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.84 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 96.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.8 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.72 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 96.69 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 96.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.55 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.44 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 96.44 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.44 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.39 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.36 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 96.35 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 96.35 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 96.34 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 96.3 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 96.28 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 96.26 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.25 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 96.21 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.14 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 96.14 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 96.09 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.06 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 95.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 95.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 95.91 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 95.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.87 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.67 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 95.6 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 95.59 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 95.49 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 95.48 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 95.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 95.41 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 95.38 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 95.38 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 95.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 95.29 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.27 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 95.25 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.16 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.15 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.13 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 95.1 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 94.97 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.76 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 94.73 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 94.59 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 94.48 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 94.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 94.15 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.14 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 94.08 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 93.98 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 93.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 93.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 93.79 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 93.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 93.68 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 93.54 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.16 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 93.1 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 93.07 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 93.02 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 92.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 92.27 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 92.24 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 92.14 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 91.86 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 91.84 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 91.72 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 91.54 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 91.34 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 91.28 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 91.26 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 90.75 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 90.43 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 90.37 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 90.29 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 90.18 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 89.96 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 89.16 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 88.99 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 88.6 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 88.57 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 88.56 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 88.43 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 88.0 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 87.45 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 86.66 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 86.46 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 86.35 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 86.2 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 85.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 85.42 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 85.34 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.86 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 84.58 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 84.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 84.14 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 84.1 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 83.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 83.12 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 82.95 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 82.94 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 82.7 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 82.22 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 82.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.02 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 81.87 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 80.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 80.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 80.51 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 80.07 |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-13 Score=113.54 Aligned_cols=260 Identities=17% Similarity=0.248 Sum_probs=180.7
Q ss_pred cceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
.+|..+-... +++++-...|....|+..+++.+..+..... .+.++-+...++.+++++. | ..++...+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~---~--~~i~i~~~--- 80 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSS---D--KTIRLWDL--- 80 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCCCEEEEEcC---C--CeEEEEEc---
Confidence 4455554443 5666667789999999998887776654444 4555666655656666442 2 22322222
Q ss_pred hhhhCCCCCCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEE
Q 016020 167 YIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIF 243 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~ 243 (396)
..++ ++.+- ..-..+-.+.|++ ++++++....++.+++||+.+.+.++.+.. ..+..+.++|+-.+++.
T Consensus 81 --~~~~-----~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 81 --ETGE-----CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred --Cccc-----ceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEE
Confidence 1111 11111 0011234567777 478888888899999999999999999985 56999999995444454
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEE
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFi 320 (396)
... .-.+.+|++.+++.+..+. .+... +.|.+ .+++|++...++.+++||+.+++.......+...+.+..
T Consensus 153 ~~~--~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 153 SSQ--DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred EcC--CCcEEEEEccccccceeEe---cCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE
Confidence 442 3568999999999988877 33333 67766 667899999999999999999999888777778899999
Q ss_pred EeecCeEEEEEE-cCeEEEEecc-cceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 321 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 321 Fly~~qLFLTfs-~gti~iWd~~-geL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
|.+++.++++.+ +|+|.+||.. ++.+..+..|..... ..++++++++...|
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 999999999998 7999999998 467777776642211 14455666665555
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=136.78 Aligned_cols=181 Identities=18% Similarity=0.308 Sum_probs=157.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe-ecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-etG~~l~s 265 (396)
+.|.+ +|+.+++.++++..++|++.+.+ .+..+.+ ..|.+++|||+--.++.... ++.|+|||+ ++|..++.
T Consensus 165 ~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~--D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 165 VDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD--DKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred EEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC--CceEEEeeccCCCeEEEE
Confidence 67888 89999999999999999999998 8888855 89999999999877777666 899999999 77789999
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
++ +|... ++|.+ .++.|+....|+.++|||+.++++.++..+|....++--|.++++++++.+. |.|.|||.
T Consensus 242 l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 242 LK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred ec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 98 77777 99999 5599999999999999999999999999999999999999999999999995 99999999
Q ss_pred ccce---eeeecccccc-----CCCCCCCcEEEccCCcEEEEecc
Q 016020 342 RGEL---VTSFEDHLLW-----HPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 342 ~geL---~t~fedh~l~-----~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.... +..+.++.-. ...++++++.++..-|--+.+-+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 9954 3455555444 33489999999998886666633
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=132.60 Aligned_cols=256 Identities=16% Similarity=0.213 Sum_probs=172.9
Q ss_pred cccceeeeccccceEEEecCC----CCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCccee
Q 016020 107 SGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFE 181 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s----~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~ 181 (396)
+|+|...+..+-+....++.. +...|.++=++.+.+-+++.+ .|. .++ .-..+.. ..++ +...|..+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg---~D~--~I~--iwd~~~~~~~~~-~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG---VNK--KIK--IFECESIIKDGR-DIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe---CCC--EEE--EEECCccccccc-ccccceEE
Confidence 677888776655555555543 577899999997766555543 122 222 2222211 1111 11112221
Q ss_pred ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEee
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
-..-.....+-|++..+..++....|+.++|||+.+.+.+..+.+ ..|..+.++| +-.+|+.... +..++|||+.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~--Dg~v~iWd~~ 606 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD--DGSVKLWSIN 606 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC--CCEEEEEECC
Confidence 111111234566666678899899999999999999998888865 7799999985 4444555555 5679999999
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce-EEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
+|+.++.+... ..-..+.|....+.+|++...|+.|++||+++.+ .+.+..+|.....+.-|. +++.++|.+. ++|
T Consensus 607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 99999887631 1112367766678999999999999999999876 355667888888888887 6667777776 899
Q ss_pred EEEecc-------cceeeeeccccccCC---CCCCCcEEEccCCcEEE
Q 016020 337 AVWNFR-------GELVTSFEDHLLWHP---DCNTNNIYITSDQDLII 374 (396)
Q Consensus 337 ~iWd~~-------geL~t~fedh~l~~~---~c~~n~~~it~~qd~ii 374 (396)
++||++ +..+..|++|.-+.. ..+++.+++|..+|=-|
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEE
Confidence 999996 246778888864322 25667777777655433
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-11 Score=103.10 Aligned_cols=157 Identities=18% Similarity=0.334 Sum_probs=126.3
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
.+.|++ +|+.++....++.+++||+.+.+.+..+.. ..+..+.++|+--.++.... ...++||++++++.+..+.
T Consensus 14 ~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 14 CVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS--DKTIRLWDLETGECVRTLT 90 (289)
T ss_pred EEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC--CCeEEEEEcCcccceEEEe
Confidence 456777 577888788899999999999887777765 67789999988744454444 5678999999998888776
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-cCeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-~gti~iWd~~g 343 (396)
.+... +.|.+. ++.++....++.+.+||+.+++.......+...+.+..|.++++++++.+ +|.|.+||.+.
T Consensus 91 ---~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 91 ---GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred ---ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 33333 667764 66777777799999999999888888778888899999999999988888 79999999984
Q ss_pred -ceeeeecccc
Q 016020 344 -ELVTSFEDHL 353 (396)
Q Consensus 344 -eL~t~fedh~ 353 (396)
+.+..++.|.
T Consensus 167 ~~~~~~~~~~~ 177 (289)
T cd00200 167 GKCVATLTGHT 177 (289)
T ss_pred cccceeEecCc
Confidence 7777888775
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=123.13 Aligned_cols=188 Identities=18% Similarity=0.304 Sum_probs=150.7
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEec-cCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDL-KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdl-knYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+-|.+ .|+.++..+.|.++|+||+ .++.+++++.+ ..|..+.|+|.-.+++.... +-.++||++.+|+.+..+.
T Consensus 209 ~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~--D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 209 VAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD--DGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred eEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC--CCcEEEEeccCCeEEEeee
Confidence 44556 7889999999999999999 88899999988 89999999988888888777 7889999999999999998
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceE--EE-ecccccC-CCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-VSRTEFM-TPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki--~~-v~~t~~~-~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+|+.. ++|.+ .+.+|+..+.|+.|+|||+.++++ .+ +...+.- +.+...|.+++..+++... +++++|
T Consensus 286 ---~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 286 ---GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred ---ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 66666 67988 999999999999999999999994 44 4444433 5788899999999999998 599999
Q ss_pred eccc-ceeeeeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 340 NFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 340 d~~g-eL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
|++. ..+..+..|..-. .|.....+ +...-+|++.++.-.-..|.-
T Consensus 362 ~l~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 362 DLRSGKSVGTYTGHSNLV-RCIFSPTL-STGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred EccCCcceeeecccCCcc-eeEecccc-cCCCCeEEEEeCCceEEEEeC
Confidence 9995 6666676666642 56666666 445555666655554444433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=119.11 Aligned_cols=164 Identities=15% Similarity=0.280 Sum_probs=125.1
Q ss_pred hCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCce-------EEEEecc--CceEEEEEcCC
Q 016020 170 RGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSISD--KHVQEIKISPG 237 (396)
Q Consensus 170 ~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs-------~lysIs~--~~VqEIkiSpg 237 (396)
.|++...-|++.. |-| -+.|++.++..|+..+.|+.++|||+.+.. .+..+.+ ..|..++++|.
T Consensus 61 ~G~~~~~~~~l~G----H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 61 YGKLASNPPILLG----QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred cccCCCCCceEeC----CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC
Confidence 4665555566542 333 467888788899999999999999997652 4566665 77999999986
Q ss_pred e-EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 238 I-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 238 ~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
. .+|+.... +..++|||+++|+.+..+. .|... +.|.+ .+..|+....|+.|+|||+++++.+.....|.
T Consensus 137 ~~~iLaSgs~--DgtVrIWDl~tg~~~~~l~---~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGA--DMVVNVWDVERGKAVEVIK---CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeC--CCEEEEEECCCCeEEEEEc---CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 4 45555554 5779999999999887766 44444 77777 78999999999999999999999887666664
Q ss_pred C-CCceEEEeecCeEEEEEE-----cCeEEEEeccc
Q 016020 314 M-TPSAFIFLYENQLFLTFR-----NRTVAVWNFRG 343 (396)
Q Consensus 314 ~-~PsAFiFly~~qLFLTfs-----~gti~iWd~~g 343 (396)
. .+...+|.+++.+++|.. +|+|.+||.+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 3 344677888888888753 58999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=96.26 Aligned_cols=248 Identities=12% Similarity=0.194 Sum_probs=152.5
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 180 (396)
++.-...|...+||..|++.+..++... -++++-++.....++++ .. .++ .+ +.... ..|+. ...+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~-~~-~~~--~v--~~~d~---~~~~~---~~~~ 69 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVC-AS-DSD--TI--QVIDL---ATGEV---IGTL 69 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEE-EC-CCC--eE--EEEEC---CCCcE---EEec
Confidence 3344567889999999999888887532 35677777665554332 21 121 12 22211 11111 0011
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet 259 (396)
.. -..|..+.|++....+.+.+..++.+++||+++.+.+..+.. ..+..+.++|+-.+++...... --+.+|+..+
T Consensus 70 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-~~~~~~d~~~ 146 (300)
T TIGR03866 70 PS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT-NMAHFIDTKT 146 (300)
T ss_pred cC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC-CeEEEEeCCC
Confidence 11 123566788874445656677899999999999998888873 5678899997554444333321 1245679988
Q ss_pred CcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecc-------cccCCCceEEEeecCeE-EEE
Q 016020 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-------TEFMTPSAFIFLYENQL-FLT 330 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~-------t~~~~PsAFiFly~~qL-FLT 330 (396)
|+.+...... .+...+.|.+ .+.+|++. +.++.+.+||+.++++..... .....|..+.|.++++. |++
T Consensus 147 ~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 147 YEIVDNVLVD-QRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CeEEEEEEcC-CCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 8877654311 1223367766 67888655 468899999999998765322 12345677889998875 676
Q ss_pred EE-cCeEEEEeccc-ceeeee-ccccccCCC-CCCCcEEEc
Q 016020 331 FR-NRTVAVWNFRG-ELVTSF-EDHLLWHPD-CNTNNIYIT 367 (396)
Q Consensus 331 fs-~gti~iWd~~g-eL~t~f-edh~l~~~~-c~~n~~~it 367 (396)
.. ++++.+||.+. +++..+ .++..+... .++++..++
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 65 47899999986 554433 345444322 566665443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=121.70 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=136.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce--------EEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEee
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--------MLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs--------~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Ie 258 (396)
-+.|++.++..|+..+.|+.+||||+.+.. .+..+.+ ..|..|.|+|.. .+|+.... +..++|||+.
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~--DgtIrIWDl~ 156 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF--DSFVNIWDIE 156 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC--CCeEEEEECC
Confidence 457887678899999999999999998642 2334443 789999999854 55555554 5789999999
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCce-EE----EeecCeEEEEEEc
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA-FI----FLYENQLFLTFRN 333 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsA-Fi----Fly~~qLFLTfs~ 333 (396)
+|+.+..+.+. ..-..+.|.+ .|..|+....|+.|+|||++++++.....+|.....+ -+ |.++++.++|...
T Consensus 157 tg~~~~~i~~~-~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 157 NEKRAFQINMP-KKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred CCcEEEEEecC-CcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 99988776521 1122377777 7889988989999999999999998877777654322 22 2378888887653
Q ss_pred -----CeEEEEeccc--ceeeeec--cc---cccCCCCCCCcEEEccCCcEEEEeccCCC
Q 016020 334 -----RTVAVWNFRG--ELVTSFE--DH---LLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 334 -----gti~iWd~~g--eL~t~fe--dh---~l~~~~c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
|+|.|||++. +.++.++ .+ +.+.-+-.++.+|+++.-|--|-|+....
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 4899999994 4444433 22 22344466799999998888888877643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=117.98 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=189.9
Q ss_pred ccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 016020 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (396)
Q Consensus 97 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 175 (396)
..++|+--.-+|.|.+++..+.+.+|.|-.-..+|.--.|+-. .+.++++.|.- + +.|--.++.
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D---g--tvklw~~~~---------- 250 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD---G--TVKLWKLSQ---------- 250 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC---C--ceeeeccCC----------
Confidence 3577788889999999999999999999999999999889988 46788886532 2 222222222
Q ss_pred CCccee-ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 176 GFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 176 ~~~LF~-~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
..||=+ ..-+..=+=|-|-+ +|+-|+.-+-|.+-|+||+.+.+.+---.+ +.|.+|.+-++=-|+.+.+- +-.-
T Consensus 251 e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl--D~~~ 327 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL--DSLG 327 (459)
T ss_pred CcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc--cchh
Confidence 222211 11223345578888 999999999999999999999997666666 99999999866555566665 5667
Q ss_pred EEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLF 328 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLF 328 (396)
+|||+-||..++-|. +|.++ |+|.+ -|-.|.....|...+|||++-++...+-++|.+.++-.-|.+ .|...
T Consensus 328 RvWDlRtgr~im~L~---gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLA---GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred heeecccCcEEEEec---ccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 999999999999888 88898 89999 777888899999999999999999999999999999999998 55556
Q ss_pred EEEEc-CeEEEEeccc-ceeeeeccccc
Q 016020 329 LTFRN-RTVAVWNFRG-ELVTSFEDHLL 354 (396)
Q Consensus 329 LTfs~-gti~iWd~~g-eL~t~fedh~l 354 (396)
+|.+. ++++||...+ +++.++-+|.-
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~ 431 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEG 431 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCcc
Confidence 66666 8999999999 89889888853
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-11 Score=125.58 Aligned_cols=233 Identities=19% Similarity=0.168 Sum_probs=173.9
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEec-------CCCceee------eEeeeh
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS-------DNFSSLK------CRSTKI 165 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~s-------d~~s~L~------cr~~~~ 165 (396)
+.+++-+.|+--+.|+.-| .-|.|=+.++|+|-|+---..++-|++.|=-.| ++++..- |++-++
T Consensus 337 ~~laVATNs~~lr~y~~~~--~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPT--SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ceEEEEeCCCceEEEecCC--CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 5667777888888885544 478888999998888874444444444331111 2222221 222222
Q ss_pred hhh------------------------hhCCCCCCCcceeeccc-----CCCCeEEeeCCCCcEEEeecCCCeEEEEecc
Q 016020 166 EYI------------------------RRGKPDSGFALFESESL-----KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 216 (396)
Q Consensus 166 ~~i------------------------~~gk~~~~~~LF~~~~l-----~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk 216 (396)
-.+ ..-|..+.-+.|...+- |-=--|+..+ |.+.+|-.+||++-|+|++.
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeeccc
Confidence 111 11111111123321100 1112377777 99999999999999999999
Q ss_pred CceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeec
Q 016020 217 NYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 217 nYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
+-..+-.+++ ..|++|+|||.-.+|...+. +..+|||+|+|+.++++|. +|+.- ++|+- .+++|+..--
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg--D~TvKIW~is~fSClkT~e---GH~~aVlra~F~~-~~~qliS~~a 567 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG--DKTVKIWSISTFSCLKTFE---GHTSAVLRASFIR-NGKQLISAGA 567 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccC--CceEEEEEeccceeeeeec---CccceeEeeeeee-CCcEEEeccC
Confidence 9999999999 99999999999888888777 8999999999999999999 66655 88998 9999999999
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
|+-|+|||+.|++|..++..|.+..-|+.=.+...-|+|-.. |.|-+|-
T Consensus 568 dGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999998887765 8999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=109.24 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=131.0
Q ss_pred CCcEEEeecCCCeEEEEeccCc-----eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNY-----TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
+-.++...+-|...-+|+|.-= .-+..+.+ ..|.++.+|++...+++.+- +..+++||+++|+..-.|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw--D~~lrlWDl~~g~~t~~f~-- 102 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW--DGTLRLWDLATGESTRRFV-- 102 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc--cceEEEEEecCCcEEEEEE--
Confidence 3456666677999999998532 24666666 78999999988887776665 8999999999998887777
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc-cCCCceEEEeec--CeEEEEEEc-CeEEEEecc
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYE--NQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~-~~~PsAFiFly~--~qLFLTfs~-gti~iWd~~ 342 (396)
.|++. ++|.. .+.+|..+..|..|++||+...-.+++...- .++.+++.|+|. +-.+++-++ +++++||++
T Consensus 103 -GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 103 -GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred -ecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 89888 89888 9999999999999999999999888887765 899999999998 677888888 899999999
Q ss_pred c-ceeeeeccccccC
Q 016020 343 G-ELVTSFEDHLLWH 356 (396)
Q Consensus 343 g-eL~t~fedh~l~~ 356 (396)
+ ++.++|=+|.-+.
T Consensus 181 ~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 181 NCQLRTTFIGHSGYV 195 (315)
T ss_pred CcchhhccccccccE
Confidence 9 7999999887664
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=107.78 Aligned_cols=245 Identities=14% Similarity=0.180 Sum_probs=175.3
Q ss_pred cccceEEEeec-cchhhhhh-ccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 87 KRTKVIEIVAA-RDIVFALA-HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 87 ~RS~V~EIv~a-~dii~~L~-~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
-|++|.-++.- ...+++++ +.+.-.+||.+||+..--|-.-.+. +-+|=|--...-|++.| +.|...-..
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcS-------sDl~~~LWd 178 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCS-------SDLSAKLWD 178 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecC-------Cccchhhee
Confidence 68889888886 45566666 7899999999999886666555555 55555554555566554 223222222
Q ss_pred ----hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe
Q 016020 165 ----IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI 238 (396)
Q Consensus 165 ----~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~ 238 (396)
.++|+. ..|. ...+..| -|=+ .|.-+.+++-|.+||.|+..+.-++|.+.+ |=|.-|++..+=
T Consensus 179 ~~~~~~c~ks---~~gh----~h~vS~V---~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 179 FDTFFRCIKS---LIGH----EHGVSSV---FFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHHHHHHHH---hcCc----ccceeeE---EEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 233332 1111 1222222 2333 357788899999999999999999999999 889999999665
Q ss_pred EEEEEecCCCeeeeEEEEeecCcEEEEEEe---------ecccCCccchhhhhcc-----eeeEeecCCeeeEEEcccce
Q 016020 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYH---------LLHRNKKVDFIEQFNE-----KLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 239 ~Ll~~q~~~~~iplkIl~IetG~~l~s~~~---------~L~~sk~i~FiE~~~e-----kLLIKQed~~L~I~Dv~~~k 304 (396)
-|+.+ ..++-.+.+|.+.++++...+.- .-|-+...+-.|+.++ +|..+..|..|+||||-++.
T Consensus 248 ti~As--~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 248 TIIAS--CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred eEEEe--cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 54444 44588899999999955543331 1123333444566664 99999999999999999999
Q ss_pred EEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 305 i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
|+-++-+|.++.+...|.+.|+..++..+ +|+.+||++- +-.-++|-|
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 99999999999999999999999999999 8999999998 433344444
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-10 Score=116.75 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=142.1
Q ss_pred CCCeEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 187 WPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 187 ~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+-|=++|-|+ +++-+|..+.|++.|+|++.+=+.|=.|.+ ..|..++|-|+=..|....- +..-.|||++||+++
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf--D~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF--DSTWRLWDLETKSEL 296 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc--ccchhhcccccchhh
Confidence 3466788888 799999999999999999999999999988 89999999976655555555 689999999999998
Q ss_pred EEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 264 KVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
--.. +|++. |.|-. +|+-+..+--|.-=+|||++|+.++-++.+|-...-+.=|.|+|...-|=|. ++++||
T Consensus 297 L~QE---GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 297 LLQE---GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred Hhhc---ccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence 8666 77777 77766 9999999999999999999999999999999999999999999999999887 999999
Q ss_pred eccc-ceeeeeccccccCC
Q 016020 340 NFRG-ELVTSFEDHLLWHP 357 (396)
Q Consensus 340 d~~g-eL~t~fedh~l~~~ 357 (396)
|+++ ..+-.+-.|---+.
T Consensus 373 DLR~r~~ly~ipAH~nlVS 391 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHSNLVS 391 (459)
T ss_pred eecccccceecccccchhh
Confidence 9999 45555555544433
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=116.72 Aligned_cols=173 Identities=13% Similarity=0.229 Sum_probs=146.6
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
-|.+ --|-|.++++|++.|+|+|.+.+++..-++ .-||+++|+|--.-+++.++ +-...+|+...-+++..|.
T Consensus 458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~--D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH--DQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred eecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC--CceeeeeecccCCchhhhc--
Confidence 4666 567888999999999999999998887777 88999999998777677655 7778999988855555444
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E 344 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e 344 (396)
.|.++ +.|=+ -..|+..+.-|...|+||+.+|...++=.+|.-+..|..|++.+....+-+. |.|.+||..+ .
T Consensus 533 -ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 533 -GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred -ccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 88888 55877 7889999999999999999999999999999999999999998888888777 9999999999 7
Q ss_pred eeeeecccccc---CCCCCCCcEEEccCCc
Q 016020 345 LVTSFEDHLLW---HPDCNTNNIYITSDQD 371 (396)
Q Consensus 345 L~t~fedh~l~---~~~c~~n~~~it~~qd 371 (396)
++..|=+|--- ..+|.+|++.+++.+|
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 99999998111 1229999999998876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=84.22 Aligned_cols=226 Identities=14% Similarity=0.166 Sum_probs=141.2
Q ss_pred hccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecc
Q 016020 105 AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES 184 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~ 184 (396)
...|....||..+++.+..+-... + ++.+-+....+.+.+ +. .++ ..++ ..+++ .+ ..+..-..
T Consensus 50 ~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~g~~l~~-~~--~~~-~~l~--~~d~~---~~-----~~~~~~~~ 113 (300)
T TIGR03866 50 SDSDTIQVIDLATGEVIGTLPSGP-D-PELFALHPNGKILYI-AN--EDD-NLVT--VIDIE---TR-----KVLAEIPV 113 (300)
T ss_pred CCCCeEEEEECCCCcEEEeccCCC-C-ccEEEECCCCCEEEE-Ec--CCC-CeEE--EEECC---CC-----eEEeEeeC
Confidence 356778889988888877664322 2 244555555554433 21 222 2233 22221 11 11111111
Q ss_pred cCCCCeEEeeCCCCcEEEeecCC-CeEEEEeccCceEEEEec-cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d-~~YrVwdlknYs~lysIs-~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-..|.-+.|++ +|+.++..+.+ ....+||+++.+.+..+. +.....+.++|+-..++.... ..-.+.+||+++|+.
T Consensus 114 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 114 GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE-IGGTVSVIDVATRKV 191 (300)
T ss_pred CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC-CCCEEEEEEcCccee
Confidence 12366788988 77777666665 467889999998776553 356677889866554433221 234689999999998
Q ss_pred EEEEEeeccc-------CCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEE-EE-
Q 016020 263 LKVFYHLLHR-------NKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT-FR- 332 (396)
Q Consensus 263 l~s~~~~L~~-------sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLT-fs- 332 (396)
+..+.+..+. ...+.|.+ .+..+++. ..+..+.+||+.+++...... +...|...-|.++++..++ -.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred eeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCC
Confidence 8876632211 01255554 77777765 456679999999998876432 3346888889999887554 34
Q ss_pred cCeEEEEeccc-ceeeeec
Q 016020 333 NRTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 333 ~gti~iWd~~g-eL~t~fe 350 (396)
+|+|.+||+++ ++++.++
T Consensus 270 ~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 270 SNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCeEEEEECCCCcEEEEEE
Confidence 59999999999 6778775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=110.80 Aligned_cols=149 Identities=13% Similarity=0.291 Sum_probs=123.2
Q ss_pred CCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCC--------------
Q 016020 187 WPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSS-------------- 247 (396)
Q Consensus 187 ~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~-------------- 247 (396)
|-|-| .||+ |++.+.+.|+++||||..|.++|..+=+ |+|.-++++.|+|+-- ...+
T Consensus 236 HtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtc-SkDrsiaVWdm~sps~it 311 (499)
T KOG0281|consen 236 HTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTC-SKDRSIAVWDMASPTDIT 311 (499)
T ss_pred CCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEe-cCCceeEEEeccCchHHH
Confidence 44544 6776 6999999999999999999999999877 9999999999999732 2221
Q ss_pred --------------------------CeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcc
Q 016020 248 --------------------------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 248 --------------------------~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
++-.+|+|++.||+.+..++ +|..-|.-++--+..++.+.-|..|++||+.
T Consensus 312 ~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 312 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred HHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhh---cccccceehhccCeEEEecCCCceEEEEecc
Confidence 34689999999999999888 8878888777556666778999999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEE-cCeEEEEecccc
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 344 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-~gti~iWd~~ge 344 (396)
.|++++|+.+|-...++..|-. +-.++=- +|+|+|||++..
T Consensus 389 ~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 389 CGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ccHHHHHHhchHHhhhheeecC--ceeeeccccceEEEEecccc
Confidence 9999999999999999999954 3344443 499999998763
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-07 Score=99.14 Aligned_cols=208 Identities=13% Similarity=0.173 Sum_probs=130.1
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC--CCCCccee-ecccCCCCeEEeeCCCCcEEEe
Q 016020 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP--DSGFALFE-SESLKWPGFVEFDDVNGKVLTY 203 (396)
Q Consensus 127 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~--~~~~~LF~-~~~l~~PgfVEFDd~NgkIlt~ 203 (396)
.+..-|.++=++..++.++. .++++ ..++.--++ .+.+ ....++.. ..--..-..+.|.+..+.+|+.
T Consensus 73 GH~~~V~~v~fsP~d~~~La---SgS~D-gtIkIWdi~-----~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLF---TASED-GTIMGWGIP-----EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEE---EEeCC-CEEEEEecC-----CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 45667888888874444433 12334 234433332 2211 01122221 1112234568899866779999
Q ss_pred ecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC---ccch
Q 016020 204 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK---KVDF 278 (396)
Q Consensus 204 ~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk---~i~F 278 (396)
.+.|+.++|||+++.+.+..+.. ..|..+.|+|+--+++.... +..++|||+.+|+.+.++.. |... .+.|
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~--Dg~IrIwD~rsg~~v~tl~~--H~~~~~~~~~w 219 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK--DKKLNIIDPRDGTIVSSVEA--HASAKSQRCLW 219 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC--CCEEEEEECCCCcEEEEEec--CCCCcceEEEE
Confidence 99999999999999999999875 67999999987666666665 67799999999999887761 2222 3556
Q ss_pred hhhhcceeeE----eecCCeeeEEEcccce-EEEecccccCC-CceEEEeecCeEEEEE-E-cCeEEEEeccc-ceeee
Q 016020 279 IEQFNEKLLV----KQENENLQILDVRNAE-LMEVSRTEFMT-PSAFIFLYENQLFLTF-R-NRTVAVWNFRG-ELVTS 348 (396)
Q Consensus 279 iE~~~ekLLI----KQed~~L~I~Dv~~~k-i~~v~~t~~~~-PsAFiFly~~qLFLTf-s-~gti~iWd~~g-eL~t~ 348 (396)
.. .+..|+. +..|..+++||+++.+ .+.+...+... ...-.|.++++++++- + +|+|.+||++. +++..
T Consensus 220 ~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 220 AK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred cC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 65 3455553 3457889999999754 33222111111 2222355566665544 3 69999999997 44443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=108.78 Aligned_cols=170 Identities=16% Similarity=0.254 Sum_probs=140.8
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-E
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV-F 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s-~ 266 (396)
-+-|.+ .|+.|+..+-|.+.|+||+.+-..++...+ .=|++|.|||+--.+.+... ...+.|||-.+|+.+.. |
T Consensus 120 ~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~--dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 120 SVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK--DGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred EEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc--CCeEEEecCCCCCcccccc
Confidence 367999 999999999999999999999999999998 77999999998887777776 67789999999999885 4
Q ss_pred EeecccCCc---cchhh----hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 267 YHLLHRNKK---VDFIE----QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE----~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
. .|+|- +.|-+ .-..+|.....|++++|||+.-++++..+-+|.++..+.-.=-++=+|=...|+||++|
T Consensus 197 ~---gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw 273 (480)
T KOG0271|consen 197 R---GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVW 273 (480)
T ss_pred c---CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEE
Confidence 4 44443 11111 12348889999999999999999999999999999999988777777777788999999
Q ss_pred ecc-cceeeeeccccccCCC--CCCCcEE
Q 016020 340 NFR-GELVTSFEDHLLWHPD--CNTNNIY 365 (396)
Q Consensus 340 d~~-geL~t~fedh~l~~~~--c~~n~~~ 365 (396)
+.. |-+...|-+|.-|.-. |+|+-+.
T Consensus 274 ~a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 274 RALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred EccchhHHHhhcccchheeeeeccchhhh
Confidence 875 4799999999999544 7655443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-08 Score=104.11 Aligned_cols=233 Identities=15% Similarity=0.178 Sum_probs=155.4
Q ss_pred cccceEEEeec---cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEee
Q 016020 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (396)
Q Consensus 87 ~RS~V~EIv~a---~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~ 163 (396)
..++|..+... ..+|+.-...|....||..+++.+..+.... .-|.++-++..+.+++.. ...|. .++.-.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~S--gs~Dg--~v~iWd- 604 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLAS--GSDDG--SVKLWS- 604 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEE--EcCCC--EEEEEE-
Confidence 34566665543 3567777788999999999999888887544 456677777545554431 12232 222222
Q ss_pred ehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc--CceEEEEEcCCeEE
Q 016020 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KHVQEIKISPGIML 240 (396)
Q Consensus 164 ~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~--~~VqEIkiSpg~~L 240 (396)
++.|+ .+.+-..-...-.+.|.+.+|..++..+.|+.+++||+++.+ .+..+.+ ..|..++++++..|
T Consensus 605 ----~~~~~-----~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~l 675 (793)
T PLN00181 605 ----INQGV-----SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTL 675 (793)
T ss_pred ----CCCCc-----EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEE
Confidence 22222 121111111233567766689999999999999999999877 4667765 68999999988765
Q ss_pred EEEecCCCeeeeEEEEeecC------cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe---
Q 016020 241 LIFNRSSSHVPLKILSIEDG------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV--- 308 (396)
Q Consensus 241 l~~q~~~~~iplkIl~IetG------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--- 308 (396)
+.. .. +-.++|||+.++ +.+.++. .|... +.|.+ .+.+|+...+|+.+.|||..+...+..
T Consensus 676 vs~-s~--D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 676 VSS-ST--DNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred EEE-EC--CCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 443 33 456999999854 4555554 55544 55655 578999999999999999876532210
Q ss_pred ----------cccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 309 ----------SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 309 ----------~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
...+....++.-|.++++.+++-+. |+|+|||.
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1122334577778899988888777 99999985
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-07 Score=99.27 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=136.7
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc--eeeccc
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL--FESESL 185 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L--F~~~~l 185 (396)
|+...++..+...++.+.. +..-|.++=++..++.++. | ++++ ..++.--++-.......+ ..|+ +.. --
T Consensus 54 gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLA-S--gS~D-gtIrIWDi~t~~~~~~~i--~~p~~~L~g-H~ 125 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILA-S--GSED-LTIRVWEIPHNDESVKEI--KDPQCILKG-HK 125 (568)
T ss_pred eEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEE-E--EeCC-CeEEEEECCCCCcccccc--ccceEEeec-CC
Confidence 3445566666666676754 4456677777766544443 1 2233 233333222110000000 0111 110 11
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
..-..+.|.+....+++..+.|++++|||+++.+.++++.. ..|..+.|+|+-.+|+.... .-.++|||+.+|+.+.
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~--D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV--GKHMHIIDPRKQEIAS 203 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec--CCEEEEEECCCCcEEE
Confidence 22346788885556777788899999999999999888865 67999999976555555443 4568999999999998
Q ss_pred EEEeecccCCc----cchhh---hhcceeeEeecCC----eeeEEEccc-ceEEEecccccCCCceEEEee---cCeEEE
Q 016020 265 VFYHLLHRNKK----VDFIE---QFNEKLLVKQENE----NLQILDVRN-AELMEVSRTEFMTPSAFIFLY---ENQLFL 329 (396)
Q Consensus 265 s~~~~L~~sk~----i~FiE---~~~ekLLIKQed~----~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly---~~qLFL 329 (396)
++. .|... .-++. ..+++|+.-..+. .++|||+++ ++.+.+. +....+...+..| ++.+|+
T Consensus 204 tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 204 SFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEeeeCCCCCEEE
Confidence 776 33322 11221 2567888866553 699999996 5544432 3444455444443 588899
Q ss_pred EEEc-CeEEEEecccc
Q 016020 330 TFRN-RTVAVWNFRGE 344 (396)
Q Consensus 330 Tfs~-gti~iWd~~ge 344 (396)
+-+. ++|.+|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 8866 89999999654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=111.23 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=139.7
Q ss_pred cccCCCC------eEEeeCCCCcEEEeecCCCeEEEEeccC-ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeee
Q 016020 183 ESLKWPG------FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPL 252 (396)
Q Consensus 183 ~~l~~Pg------fVEFDd~NgkIlt~~a~d~~YrVwdlkn-Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~ipl 252 (396)
-+..|+| ++.|-+..|..+.+...|+.++||++++ +.+|=...+ +.|.++++|+ |.-+|-... +..+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---D~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---DRFL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---ceee
Confidence 3445565 5678899999999999999999999999 888766666 9999999994 555544333 5999
Q ss_pred EEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
|+||.|||+++.+|... ..-.-+.|-+-...-.|++--|+.|+-||++++|++.-=..|--......|+++|..|+|-|
T Consensus 283 KlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999998832 11122666663336778888999999999999998876566667778899999999999999
Q ss_pred c-CeEEEEecccc----eeeeecccccc----CCC-------CCCCcEEEccCC
Q 016020 333 N-RTVAVWNFRGE----LVTSFEDHLLW----HPD-------CNTNNIYITSDQ 370 (396)
Q Consensus 333 ~-gti~iWd~~ge----L~t~fedh~l~----~~~-------c~~n~~~it~~q 370 (396)
+ .++.||+.+=. +...-+.|--. ||| |.+|-++|=+..
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 9 89999999874 33444555333 333 555665554443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=101.04 Aligned_cols=194 Identities=17% Similarity=0.187 Sum_probs=142.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEE--Eeecc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF--YHLLH 271 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~--~~~L~ 271 (396)
+|..+.+++.|.++++||+++.+++|.... .-|-.+..+ =|..|+.+.+. +..+||||+-+.+..+.+ ++-|+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd--D~t~kl~D~R~k~~~~t~~~kyqlt 178 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD--DGTLKLWDIRKKEAIKTFENKYQLT 178 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCC--CceEEEEeecccchhhccccceeEE
Confidence 678888899999999999999999998876 223333333 46677676666 889999999988887766 32222
Q ss_pred cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc----ce-
Q 016020 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG----EL- 345 (396)
Q Consensus 272 ~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g----eL- 345 (396)
-+.|-. .++...++-.|.-||+||+++++.+.++.+|.++.-..--+++|...++-+= .++.+||++. ++
T Consensus 179 ---Av~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 179 ---AVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred ---EEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 255555 8899999999999999999999999999999999998888899988888775 8999999986 33
Q ss_pred ee-------eeccccccCCCC--CCCcEEEccCCcEEEEeccCCCCCccccCCCcceeeC
Q 016020 346 VT-------SFEDHLLWHPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSGNSFTCL 396 (396)
Q Consensus 346 ~t-------~fedh~l~~~~c--~~n~~~it~~qd~ii~~~~~~~~~~~~~~~~~~~~~~ 396 (396)
+. +||.++||..-. -+.+-++++|.-++|==-..-.----..|-.|||||+
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 32 678888875543 3445566677666552111111111124667788874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-08 Score=105.06 Aligned_cols=188 Identities=17% Similarity=0.272 Sum_probs=155.9
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccC-------ceE----EEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTM----LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlkn-------Ys~----lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
|=|-++-.-.-.++.-++|.+.|+|+|.. +.+ .-..-|++|-.+.++|+=-|+...+- +...|||++
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq--DktaKiW~l 492 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ--DKTAKIWDL 492 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc--ccceeeecc
Confidence 44556665556788889999999999998 554 33456799999999998888777766 799999999
Q ss_pred ecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-
Q 016020 258 EDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
++++.++.+. +|.+- |+|.+ ....|+.-+-|..++||.+-+..|+++..+|...+--..|..++.-+++--.
T Consensus 493 e~~~l~~vLs---GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 493 EQLRLLGVLS---GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred cCceEEEEee---CCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 9999999999 77776 89998 6788999999999999999999999999999988888889887776666654
Q ss_pred CeEEEEeccc-ceeeeecccc--ccCCC-CCCCcEEEccCCcEEEEeccCCCC
Q 016020 334 RTVAVWNFRG-ELVTSFEDHL--LWHPD-CNTNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~--l~~~~-c~~n~~~it~~qd~ii~~~~~~~~ 382 (396)
|.+++||..- +=..+++.|. .|+.- .+....|+|++-|=-|-.-|...+
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999998 6777888886 78776 455567888988888777776543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-08 Score=100.19 Aligned_cols=195 Identities=14% Similarity=0.231 Sum_probs=160.4
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.-|.|=--|.+|+. ..+.+.++.|.++++||+.+.++.-++.+ +.|-++++|+-+-.|+...- +.-+|-||+|+-
T Consensus 149 gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge--dk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE--DKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC--CCeeEEEechhh
Confidence 55667777899997 56888999999999999999999999997 99999999999888887766 555666666664
Q ss_pred cE------------------------------------------EEEEEeecccCCc---cchhhhhcceeeEeecCCee
Q 016020 261 TV------------------------------------------LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENL 295 (396)
Q Consensus 261 ~~------------------------------------------l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L 295 (396)
+. +..+. +|.+. |.|-+ .+-.++..+-|..+
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~---GH~~~V~~V~~~~-~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS---GHTNPVASVMCQP-TDPQVITGSHDSTV 301 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec---CCCCcceeEEeec-CCCceEEecCCceE
Confidence 33 22222 45555 55665 78889999999999
Q ss_pred eEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeecccccc--CCCCCCCcEEEccCCcE
Q 016020 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLW--HPDCNTNNIYITSDQDL 372 (396)
Q Consensus 296 ~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~--~~~c~~n~~~it~~qd~ 372 (396)
+.||++.++...++-.|.-+.+|..--|.-.+|.+.+-+.|+=|++-. +..+++++|.-- +..-|.+.++++....=
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 999999999999999999999999999999999999999999999976 899999999644 44478889999988888
Q ss_pred EEEeccCCCCCc
Q 016020 373 IISYCKAEPEDQ 384 (396)
Q Consensus 373 ii~~~~~~~~~~ 384 (396)
+|++..-.+.-.
T Consensus 382 ~~~fwdwksg~n 393 (460)
T KOG0285|consen 382 SIMFWDWKSGHN 393 (460)
T ss_pred EEEEEecCcCcc
Confidence 888765544433
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-08 Score=103.45 Aligned_cols=173 Identities=17% Similarity=0.277 Sum_probs=135.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
++|+. =+..+-..+-|.+.||||+.++.+..++-+ .-|+.+.+-+...+. ... +=.+++|+|++|+.+..+.
T Consensus 255 l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~s--gs~--D~tVkVW~v~n~~~l~l~~- 328 (537)
T KOG0274|consen 255 LAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVS--GSR--DNTVKVWDVTNGACLNLLR- 328 (537)
T ss_pred EEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEee--ccC--CceEEEEeccCcceEEEec-
Confidence 45554 355666677799999999999999999996 889999888877753 222 4578999999999999888
Q ss_pred ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccc--ee
Q 016020 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE--LV 346 (396)
Q Consensus 269 ~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~ge--L~ 346 (396)
+|+..|.=+-..+..|+..+.|..+++||++++++.+++.+|...+.+++|-.++.++-..=+++|++||+... .+
T Consensus 329 --~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 329 --GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred --cccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhh
Confidence 57777665666689999999999999999999999999999999999997776655555555699999999995 77
Q ss_pred eeeccccccCCC-CCCCcEEEccCCc
Q 016020 347 TSFEDHLLWHPD-CNTNNIYITSDQD 371 (396)
Q Consensus 347 t~fedh~l~~~~-c~~n~~~it~~qd 371 (396)
-.+..|...+.. =..+++++++.-|
T Consensus 407 ~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred hhhcCCcccccccccccceeEecccc
Confidence 778888777632 2233444444333
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=92.30 Aligned_cols=182 Identities=19% Similarity=0.229 Sum_probs=146.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+|.|.- +|-.|-+++-|+...||=--|++.|=...+ -.||++.+.-.+-.|+...+ +..++|||+++|+.++.++
T Consensus 15 qiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA--D~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 15 QIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA--DQTAKLWDVETGKQLATWK 91 (327)
T ss_pred eEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc--cceeEEEEcCCCcEEEEee
Confidence 567766 788888899999999999999999888877 78999999999999999999 8899999999999998544
Q ss_pred e---------------------------------ecccC------Cc-------------cchhhhhcceeeEeecCCee
Q 016020 268 H---------------------------------LLHRN------KK-------------VDFIEQFNEKLLVKQENENL 295 (396)
Q Consensus 268 ~---------------------------------~L~~s------k~-------------i~FiE~~~ekLLIKQed~~L 295 (396)
. .+... ++ ..-.-..+|+|+.+-|+++|
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i 171 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI 171 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE
Confidence 1 11100 00 11112367889999999999
Q ss_pred eEEEcccc-eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCCCCCCcEEEccCCcE
Q 016020 296 QILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 296 ~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~c~~n~~~it~~qd~ 372 (396)
.+||++++ ++++..+.|.-...-.-|+++...|+|-|. .+-++||++. +..-+ +.-+||-|..-||..+|-
T Consensus 172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt------y~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT------YTTERPVNTAAISPLLDH 245 (327)
T ss_pred EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE------eeecccccceecccccce
Confidence 99999997 566677888888888999999999999998 7999999988 53333 456699999999999999
Q ss_pred EEEeccCC
Q 016020 373 IISYCKAE 380 (396)
Q Consensus 373 ii~~~~~~ 380 (396)
+|..=-.+
T Consensus 246 VilgGGqe 253 (327)
T KOG0643|consen 246 VILGGGQE 253 (327)
T ss_pred EEecCCce
Confidence 99864433
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=106.58 Aligned_cols=147 Identities=14% Similarity=0.260 Sum_probs=130.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+|.|.+ .|==-|..++|.+=|+|.--.+..+=.+=+ -+|-++++-|+...+...+. +-.+.+||+.+|....-|.
T Consensus 498 dV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs--D~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 498 DVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS--DRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred eEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC--CceEEEEEcCCCcEEEEec
Confidence 588997 677777779999999999887774433333 78899999999999888855 8999999999999988887
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+|..+ +.|.+ .|-||..+.|++.|.|||+.+++++....+|..+....-|+++|..+++-+- ++|.+||+.=
T Consensus 575 ---GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 575 ---GHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---CCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 78777 89999 9999999999999999999999999999999999999999999999998887 7999999865
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=92.01 Aligned_cols=175 Identities=16% Similarity=0.231 Sum_probs=141.4
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC--ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~--~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
.+--+||++ +|.-+..+++|...+++|+.+.+++.+|..+ .++-+++.-..+-+++.+++.+-.++.|+++|-+-+.
T Consensus 16 ~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 16 KINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred ceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 456799999 8888888999999999999999999999997 9999999999999999999999999999999999998
Q ss_pred EEEeecccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcC-eEEEEec
Q 016020 265 VFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR-TVAVWNF 341 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~g-ti~iWd~ 341 (396)
-|. +|.+.|..|+ .-++.-|....|+.++.||++..+++-..+-..-+. --|-|+|=+|.+...+ .|++||+
T Consensus 95 YF~---GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 95 YFP---GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EcC---CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEe
Confidence 888 8888866654 256999999999999999999999887655443333 3345565555555554 8999999
Q ss_pred cc-c--eee----eeccccccCCC--CCCCcEEEc
Q 016020 342 RG-E--LVT----SFEDHLLWHPD--CNTNNIYIT 367 (396)
Q Consensus 342 ~g-e--L~t----~fedh~l~~~~--c~~n~~~it 367 (396)
+. + .-+ ..+++.=|..- .|+++..+=
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 97 2 222 34677777554 788876543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-07 Score=91.12 Aligned_cols=232 Identities=17% Similarity=0.247 Sum_probs=170.4
Q ss_pred eEEEeeccchhhhhhc--cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh
Q 016020 91 VIEIVAARDIVFALAH--SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (396)
Q Consensus 91 V~EIv~a~dii~~L~~--sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i 168 (396)
|...+...|==++|+- -|.-+.+|..+|+-.+-+ .++-..|-|+=+|.+|..+++-|.- -+|+--.+--+
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~-- 137 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGV-- 137 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCc-----ceeeeeeeccc--
Confidence 3344444444455544 488999999999888855 3555667789999999999885532 23333222100
Q ss_pred hhCCCCCCCcceeecc-cCCCCeEEeeCCC-CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEe
Q 016020 169 RRGKPDSGFALFESES-LKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 169 ~~gk~~~~~~LF~~~~-l~~PgfVEFDd~N-gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q 244 (396)
...=...++ -.|=-=|-|.|.+ .-++++.+.|++.|||||.|.+..=..-+ .-+.-+.+||+=.|.++.
T Consensus 138 -------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 138 -------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred -------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 000111222 4566778999954 78889899999999999999997777666 678899999988888987
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCC-------c
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP-------S 317 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P-------s 317 (396)
+. ...+.+||+-.|+.++++.+...- ..+.|.| |.|-|-..-+.+++|||+-++++++.++..+-.| .
T Consensus 211 gk--dg~~~LwdL~~~k~lysl~a~~~v-~sl~fsp--nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 211 GK--DGEAMLWDLNEGKNLYSLEAFDIV-NSLCFSP--NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred CC--CceEEEEEccCCceeEeccCCCeE-eeEEecC--CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcE
Confidence 77 788999999999999998754222 4588998 8999999999999999999999999777776666 2
Q ss_pred e--EEEee-cCeEEEEEEcCeEEEEecc
Q 016020 318 A--FIFLY-ENQLFLTFRNRTVAVWNFR 342 (396)
Q Consensus 318 A--FiFly-~~qLFLTfs~gti~iWd~~ 342 (396)
+ .-|+. ...||--..++.|++|.+.
T Consensus 286 clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 22343 5567888888999999764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-09 Score=104.85 Aligned_cols=180 Identities=15% Similarity=0.262 Sum_probs=137.0
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
=-+.+|| +||+ +..-|.+++|||-++++++|.+++ --|.+.....- ++++.+. +-.+.|||++||++++.+
T Consensus 201 YClQYDD--~kiV-SGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSS--DsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 201 YCLQYDD--EKIV-SGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSS--DSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred EEEEecc--hhhh-cccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCC--CceEEEEeccCCchhhHH
Confidence 3477888 6655 577899999999999999999999 67888888877 4466655 677899999999999987
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
. ||..-|==+-.-|.+++.-..|.++.+||+.+- .+++|+.+|-..+-..= ++..+.+|.|. +||++|+..
T Consensus 274 i---hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd--fd~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 274 I---HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD--FDDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred h---hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec--cccceEEEecCCceEEEEecc
Confidence 6 665553333334588888999999999999873 35568888854443333 45669999988 999999998
Q ss_pred c-ceeeeecccccc-CCCCCCCcEEEccCCcEEEEeccCC
Q 016020 343 G-ELVTSFEDHLLW-HPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 343 g-eL~t~fedh~l~-~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
. +-+..+.+|--= +-.=+.+...+|..-|.-|---.++
T Consensus 349 t~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred ceeeehhhhcccccceehhccCeEEEecCCCceEEEEecc
Confidence 8 899999998643 2224677888888777766544443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-07 Score=89.23 Aligned_cols=216 Identities=13% Similarity=0.233 Sum_probs=170.3
Q ss_pred CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc--e----EEEEecc
Q 016020 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--T----MLYSISD 226 (396)
Q Consensus 153 d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY--s----~lysIs~ 226 (396)
|.|++.|-+++|.. -.|-=-.-|.| +|.-+|...-|+.-.|+++++= + .--++.+
T Consensus 83 Ds~TtnK~haipl~------------------s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g 143 (343)
T KOG0286|consen 83 DSFTTNKVHAIPLP------------------SSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG 143 (343)
T ss_pred EcccccceeEEecC------------------ceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecC
Confidence 45677777777532 22333456777 9999999999999999999855 2 2222333
Q ss_pred --CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 227 --KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 227 --~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
--+.+.++-++.+++...+. +.-.+||||+|+.+..|. .|+.+ +++.|-.+.-.+.+.=|..-++||++
T Consensus 144 HtgylScC~f~dD~~ilT~SGD---~TCalWDie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDNHILTGSGD---MTCALWDIETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred ccceeEEEEEcCCCceEecCCC---ceEEEEEcccceEEEEec---CCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence 45778899999888776665 999999999999999999 88888 77777677778888999999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCCCCCCcEEEccCCcEEEEeccC
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
.+.+..+-.+|.....+.-|.|++.-|.|=|+ +++++||++. +-+.-|+ ..-.+|+-+.+=.|..--|+.+.++.
T Consensus 218 ~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 218 SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---HDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec---cCcccCCceeEEEcccccEEEeeecC
Confidence 99999999999999999999999999999999 8999999999 3455555 33445998999889999999987765
Q ss_pred CCCCccc----------cCCCcceeeC
Q 016020 380 EPEDQWM----------EGSGNSFTCL 396 (396)
Q Consensus 380 ~~~~~~~----------~~~~~~~~~~ 396 (396)
-.-.-|- +|-.+.|.||
T Consensus 295 ~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CceeEeeccccceEEEeeccCCeeEEE
Confidence 5444442 3455566664
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=98.73 Aligned_cols=166 Identities=15% Similarity=0.167 Sum_probs=137.3
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEE-ecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYS-ISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lys-Is~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+.-+.+.+.++.+++||..+...+.. +.+ ..|+-+++..|--+|+..+. +-.+++||+.+|++..++. .|+.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~--D~t~rvWd~~sg~C~~~l~---gh~s 292 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST--DKTERVWDCSTGECTHSLQ---GHTS 292 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec--CCcEEeEecCCCcEEEEec---CCCc
Confidence 44566788899999999999999999 888 99999999977777788888 8999999999999999998 6767
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeecccc
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~ 353 (396)
-+.=+.-..-+++.+..|+.+++|||-++.++.+.++|.+++.+.... ++-+|-.-.+++|++||.+= +.++++.+|.
T Consensus 293 tv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 293 SVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred eEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 766666567777778999999999999999999999999999988777 44444444559999999986 7999999999
Q ss_pred ccCCC-CCCC-cEEEccC
Q 016020 354 LWHPD-CNTN-NIYITSD 369 (396)
Q Consensus 354 l~~~~-c~~n-~~~it~~ 369 (396)
.|+-- -.++ ++.++.-
T Consensus 372 ~~V~sl~~~~~~~~~Sgs 389 (537)
T KOG0274|consen 372 GRVYSLIVDSENRLLSGS 389 (537)
T ss_pred ceEEEEEecCcceEEeee
Confidence 99654 3333 4444443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=101.60 Aligned_cols=184 Identities=22% Similarity=0.351 Sum_probs=146.2
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE----EEE------eccCceEEEEEcCCeEEEEEecCCCeeeeEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYS------ISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~----lys------Is~~~VqEIkiSpg~~Ll~~q~~~~~iplkI 254 (396)
-.||.---|.+ .|.-|+.++.|+-+-|||+.+++. -|. .-|+.|.+|-+|-++-.|....- +..+|+
T Consensus 213 KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq--DGkIKv 289 (508)
T KOG0275|consen 213 KSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ--DGKIKV 289 (508)
T ss_pred ccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc--CCcEEE
Confidence 35777778998 899999999999999999999883 333 33588999999977665565555 789999
Q ss_pred EEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 255 LSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
|-|+||.++..|. -+|++- +.|.. +|+.||....|+.++|.-+.+||+.+--++|.--.-..+|..|+.-.++.
T Consensus 290 Wri~tG~ClRrFd--rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFD--RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhh--hhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999999887 266666 78888 99999999999999999999999999999998888888999999999998
Q ss_pred Ec-CeEEEEeccc-ceeeeec----c------cccc-CCC----CC-CCcEEEccCCcEEE
Q 016020 332 RN-RTVAVWNFRG-ELVTSFE----D------HLLW-HPD----CN-TNNIYITSDQDLII 374 (396)
Q Consensus 332 s~-gti~iWd~~g-eL~t~fe----d------h~l~-~~~----c~-~n~~~it~~qd~ii 374 (396)
|+ |+|++|+... |-+.+|- | ++++ .|. || .|++||-.-|--++
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 88 9999999876 4333331 1 1111 111 55 46777776665554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=98.60 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=125.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+.|.. -||.+|+.-..|.++|||+++=. ..|.=+---|..++++|--. ++.+... ..-.++||+.++.+...+.
T Consensus 74 ~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 74 VDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred EEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEEEEEcCCcEEEEEec
Confidence 66775 69999999999999999988744 23333337789999995333 2344444 7889999999999744443
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecc-c
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-G 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~-g 343 (396)
.|+-. .+++++-..-++.+.=|+.++.||.++..-..+.-.|.-+.+..+|++.++++.|..-+.|+|||+- |
T Consensus 151 ---~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 151 ---GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred ---CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 77766 6888877778999999999999999997433344488889999999999999999999999999998 5
Q ss_pred -ceeeeecccc
Q 016020 344 -ELVTSFEDHL 353 (396)
Q Consensus 344 -eL~t~fedh~ 353 (396)
++++++..|.
T Consensus 228 ~qll~~~~~H~ 238 (487)
T KOG0310|consen 228 GQLLTSMFNHN 238 (487)
T ss_pred ceehhhhhccc
Confidence 7888888665
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-06 Score=84.74 Aligned_cols=185 Identities=17% Similarity=0.239 Sum_probs=151.1
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccC---ceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlkn---Ys~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+|-+-+..|+|+|.++.|..+|+|++.. +.+.=.+++ ..|-+|++||.-.+|...+= +-..-||-=++|+-.
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF--D~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF--DATVVIWKKEDGEFE 96 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec--cceEEEeecCCCcee
Confidence 6667776688999999999999999994 777777766 88999999998888887776 667778887776544
Q ss_pred EEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc---ceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 264 KVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN---AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~---~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
.... +=+|-++ +.|.+ .|+||..-..|.++=||-+.. -++.-|+.+|.-.++-.+|-|...|.++-|+ +||
T Consensus 97 cv~~-lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 97 CVAT-LEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred EEee-eeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 4322 2277777 88999 999999999999999999985 4666699999999999999999999999999 899
Q ss_pred EEEecc-c---ceeeeeccc--cccCCC-CCCCcEEEccCCcEEEEecc
Q 016020 337 AVWNFR-G---ELVTSFEDH--LLWHPD-CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 337 ~iWd~~-g---eL~t~fedh--~l~~~~-c~~n~~~it~~qd~ii~~~~ 378 (396)
++|... + +++.+++.| -.|... -|++.--++.++|.-++-.+
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 999988 5 489999999 466543 45566667777777666544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-07 Score=91.59 Aligned_cols=207 Identities=19% Similarity=0.328 Sum_probs=158.3
Q ss_pred hhhCCCCCCCcceee---cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc-------eEEEEecc--CceEEEEEc
Q 016020 168 IRRGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISD--KHVQEIKIS 235 (396)
Q Consensus 168 i~~gk~~~~~~LF~~---~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY-------s~lysIs~--~~VqEIkiS 235 (396)
-+.|++++..|+|.. -.|- +++|+-|.-++|+++.|..++||..-.. +.+..+.+ +.|--|.+-
T Consensus 65 ~k~Gr~d~~~P~v~GHt~~vLD----i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wH 140 (472)
T KOG0303|consen 65 VKTGRMDASYPLVCGHTAPVLD----IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWH 140 (472)
T ss_pred ccccccCCCCCCccCccccccc----cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeec
Confidence 367999999999986 2222 6789999999999999999999986432 23455554 666667776
Q ss_pred CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC--ccchhhhhcceeeEeecCCeeeEEEcccceEEEec-ccc
Q 016020 236 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK--KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTE 312 (396)
Q Consensus 236 pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk--~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t~ 312 (396)
|-..= +.+.+..+-.++||++.||+.+.++. |+-. .+.|.- .|++|...-+|..++|||-+++++.... .-+
T Consensus 141 PtA~N-VLlsag~Dn~v~iWnv~tgeali~l~---hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 141 PTAPN-VLLSAGSDNTVSIWNVGTGEALITLD---HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred ccchh-hHhhccCCceEEEEeccCCceeeecC---CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 64421 22344457789999999999999877 3322 277887 9999999999999999999999999866 445
Q ss_pred cCCCceEEEeecCeEEEE----EEcCeEEEEeccc-c----eee--eeccccccCCCCCCCcEEEccCCcEEEEeccCCC
Q 016020 313 FMTPSAFIFLYENQLFLT----FRNRTVAVWNFRG-E----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 313 ~~~PsAFiFly~~qLFLT----fs~gti~iWd~~g-e----L~t--~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
...|.-.|||-++.+|-| .|++.+.+||-.. + +.+ +..+-+++--+--++.+|+..--|=-|-|+.-..
T Consensus 216 G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 216 GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 677888999999997655 4669999999876 2 111 4445555555678899999999999999998776
Q ss_pred CC
Q 016020 382 ED 383 (396)
Q Consensus 382 ~~ 383 (396)
+.
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-08 Score=98.04 Aligned_cols=159 Identities=15% Similarity=0.202 Sum_probs=128.7
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVF 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~ 266 (396)
+|-|-+ +--+++..+.|.+++|||+.||+++=++.+ +.|++|.++..--+|+.-+. ++|+++||.++ -+++++.
T Consensus 113 ~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs--Dl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 113 RVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS--DLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred eeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC--ccchhheeHHHHHHHHHHh
Confidence 444533 666778778999999999999999888877 78999999976666666666 89999999998 4444443
Q ss_pred E-eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-
Q 016020 267 Y-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG- 343 (396)
Q Consensus 267 ~-~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g- 343 (396)
. |- |--..|.|++ .|.+|+.-..|+.+++||+.|+.++++-++|..+.+-+-=+.|+.||-+-++ .++.+|-+..
T Consensus 190 ~gh~-h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 190 IGHE-HGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred cCcc-cceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 2 10 1123377888 7999999999999999999999999999999999999999999999999999 7999999877
Q ss_pred ceeeeecccc
Q 016020 344 ELVTSFEDHL 353 (396)
Q Consensus 344 eL~t~fedh~ 353 (396)
+-+.-|-+|.
T Consensus 268 ~~k~~lR~hE 277 (406)
T KOG0295|consen 268 QCKAELREHE 277 (406)
T ss_pred hhhhhhhccc
Confidence 4455555553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=93.13 Aligned_cols=282 Identities=17% Similarity=0.207 Sum_probs=191.2
Q ss_pred ccceEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 88 RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
|.|=.+.=..+..+++-+++|-...+|-+|-.+.=-+-.++--|=-+.|.- +-+++++ .||| ++.|.....-
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~----GsDD---~~IrVfnynt 86 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVT----GSDD---MQIRVFNYNT 86 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEE----ecCC---ceEEEEeccc
Confidence 334444555678889999999988887776655444444433322233444 5567766 6788 8899887666
Q ss_pred hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc--CceEEEEEcCCeEEEEEe
Q 016020 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 168 i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~--~~VqEIkiSpg~~Ll~~q 244 (396)
+++=+.=+.-+.|=...-+|| +.--+..++.|-++|.||..+-= +.-...+ --|++|.|-|.=-= .+.
T Consensus 87 ~ekV~~FeAH~DyIR~iavHP--------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFa 157 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHP--------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFA 157 (794)
T ss_pred ceeeEEeeccccceeeeeecC--------CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-cee
Confidence 555332122222223334444 23334456779999999998753 3333344 67899999864332 344
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhh-cceeeEeecCCeeeEEEcccceEEEecccccCCCceEE
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~-~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFi 320 (396)
++..+-.+|+|++....+-.++. +|.+- |+|...- --||+.+.+|..++|||--|+.|+.++.+|..-.++.-
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred eeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence 55568899999999888888888 77776 6666511 12899999999999999999999999999999999999
Q ss_pred EeecCeEEEEEEc-CeEEEEeccc-ceee--eecccccc--CCCCCCCcEEEccCCc-EEEEeccCCCCCccccCCC
Q 016020 321 FLYENQLFLTFRN-RTVAVWNFRG-ELVT--SFEDHLLW--HPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSG 390 (396)
Q Consensus 321 Fly~~qLFLTfs~-gti~iWd~~g-eL~t--~fedh~l~--~~~c~~n~~~it~~qd-~ii~~~~~~~~~~~~~~~~ 390 (396)
|.|+=-++.|=|. ||++||+..- .+-. ++.---.| ...--++++-|--|+- ++|.-|..+|.-+ |..|+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vs-Md~~g 310 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVS-MDSNG 310 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCcee-ecCCc
Confidence 9999999999998 9999999765 2211 33333345 2224567777777764 5567777665433 44444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=90.21 Aligned_cols=238 Identities=16% Similarity=0.193 Sum_probs=164.3
Q ss_pred eEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh
Q 016020 91 VIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR 170 (396)
Q Consensus 91 V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~ 170 (396)
-..|..+.+.|+..-.---.-.||..+|+.+-.+- ++.-.|-++-+|+.++.+|+.|+-.-.+ .-+.+..
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~-----vws~~~~---- 293 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIR-----VWSVPLS---- 293 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEE-----eeccccc----
Confidence 34555555666666555566678888887777664 4445677789999999999987543111 1111100
Q ss_pred CCCCCCCcceeecccCCCCeEEe--eCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEe
Q 016020 171 GKPDSGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 171 gk~~~~~~LF~~~~l~~PgfVEF--Dd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q 244 (396)
..| +.+..|-+=|-| -++||+-+.+.+.|++|-+-|+.+.+++-..++ .++....+-|+-+++...
T Consensus 294 -----s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 294 -----SEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred -----cCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 000 011111111111 245899999999999999999999999999988 468999999998887777
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEE
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFI 320 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFi 320 (396)
.. +.-+||||+..+..+..|- +|+.+ |+|.| -|=+|.+..+|.++++||+|.-+..++ ...++....+..
T Consensus 366 t~--d~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 366 TP--DGVVKIWDLKSQTNVAKFP---GHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred CC--CceEEEEEcCCccccccCC---CCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence 77 5678999999999777666 67776 89999 888899999999999999999887773 334444556666
Q ss_pred EeecCeEEEEEEcCeEEEEecc----c-ceeeeecccc
Q 016020 321 FLYENQLFLTFRNRTVAVWNFR----G-ELVTSFEDHL 353 (396)
Q Consensus 321 Fly~~qLFLTfs~gti~iWd~~----g-eL~t~fedh~ 353 (396)
|-..+++ |......+.||-+. . ..+..|.||.
T Consensus 440 fD~SGt~-L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 440 FDQSGTY-LGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred EcCCCCe-EEeecceeEEEEEecccccceeeehhhhcc
Confidence 6555554 44446677887776 2 3444555554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-07 Score=93.84 Aligned_cols=114 Identities=17% Similarity=0.314 Sum_probs=94.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC----------CeEEEEEecCCCeeeeEEEEee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP----------GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp----------g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
+|||+ .|..|+.++.|++.|+|+|++-.+.=.+-+ ++|--|++|| |.|++-... +-.+++||++
T Consensus 365 lk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~---dstV~lwdv~ 440 (524)
T KOG0273|consen 365 LKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF---DSTVKLWDVE 440 (524)
T ss_pred EEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec---CCeEEEEEcc
Confidence 58888 899999999999999999998875544444 6777888884 456554444 4679999999
Q ss_pred cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc
Q 016020 259 DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 312 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~ 312 (396)
.|.++..|. .|+-+ +.|++ .++||+.+.-|+.+.||++.++++++-....
T Consensus 441 ~gv~i~~f~---kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 441 SGVPIHTLM---KHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CCceeEeec---cCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 999999986 55555 89999 9999999999999999999999999865443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-05 Score=69.61 Aligned_cols=186 Identities=16% Similarity=0.290 Sum_probs=133.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc-C--ceEEEEE-cCCeEEEEEecCCCeeeeEEEEeec-CcEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-K--HVQEIKI-SPGIMLLIFNRSSSHVPLKILSIED-GTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-~--~VqEIki-Spg~~Ll~~q~~~~~iplkIl~Iet-G~~l 263 (396)
-++|+. ++..+.....|+.+++|++.+.. .+..+.. . .+..+.. ++..-.++.........+++|++.+ +...
T Consensus 70 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 70 SIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence 356776 56666666689999999999997 6767766 2 5788887 5444322222222356999999999 7777
Q ss_pred EEEEeecccCC---ccchhhhhcceeeEeec-CCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEE-EEcCeEE
Q 016020 264 KVFYHLLHRNK---KVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLT-FRNRTVA 337 (396)
Q Consensus 264 ~s~~~~L~~sk---~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLT-fs~gti~ 337 (396)
..+. .+.. .+.|.+ .+.++..... ++.+++||+.+++...+...+.......-|.+++. ++++ ..+++|.
T Consensus 149 ~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 149 RTLE---GHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEe---cCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 7666 3333 478888 5557777775 99999999999999998888999999999998887 6777 4559999
Q ss_pred EEecc-cceee-eeccccccC--CCCCCCcEEEccCCcEEEEeccCC
Q 016020 338 VWNFR-GELVT-SFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 338 iWd~~-geL~t-~fedh~l~~--~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
+||.+ ++... .++.|.... ...+++..+++...|-.+......
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred EEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeec
Confidence 99988 45555 677776653 345666666666665555444433
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=94.60 Aligned_cols=151 Identities=16% Similarity=0.229 Sum_probs=113.7
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
+|+++.+++-||++|.|||+.|..--+... -.+.++.+-|.=- ++..++.++.-+.+|++|||+.+--+. +|-
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiLs---GHE 478 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDILS---GHE 478 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehhc---CCC
Confidence 467788888899999999999996555544 5566777765333 355666678999999999999998777 888
Q ss_pred Cccc---hhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEcCeEEEEecccc-eeee
Q 016020 274 KKVD---FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRNRTVAVWNFRGE-LVTS 348 (396)
Q Consensus 274 k~i~---FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~gti~iWd~~ge-L~t~ 348 (396)
.+|- |.+ .++-|...+=|..++||||-.+.-+.=.-.+.-..-++-|.|+| +|=++-.+|.|.+||..-. .+++
T Consensus 479 gPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 479 GPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred CcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 8854 877 99999999999999999999873222111222344678888855 6778888899999999863 5545
Q ss_pred eccc
Q 016020 349 FEDH 352 (396)
Q Consensus 349 fedh 352 (396)
+|+.
T Consensus 558 Idgr 561 (893)
T KOG0291|consen 558 IDGR 561 (893)
T ss_pred ccch
Confidence 5543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.8e-06 Score=89.44 Aligned_cols=185 Identities=13% Similarity=0.198 Sum_probs=145.0
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.-+++.+ -|..+|..+.|+-+||||..-.-|+...+. -.|.-++|+-.=..|+...- +..+..||+..+..-.+|
T Consensus 354 ~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL--DGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL--DGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred eeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec--CCeEEeeeecccceeeee
Confidence 3467777 577778889999999999999999999998 78888888855444455554 788999999999998888
Q ss_pred EeecccCCccchhhhh----cceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 267 YHLLHRNKKVDFIEQF----NEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~----~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
.. ..++||.++- ||-+..+ |+.=.|.+|++.||+++.++.+|--+.+..-|.+++++..+-|+ .||++||
T Consensus 431 t~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 431 TS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred cC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 73 2678887754 5555554 46668999999999999999999999999999999999999999 8999999
Q ss_pred cccc--eeeeec--cccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 341 FRGE--LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 341 ~~ge--L~t~fe--dh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.=+. -+-.++ ..++-+..-|+|+=.-.++-|=-|.+..+.
T Consensus 507 if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 8664 444443 345555557777776666666555555544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.6e-05 Score=75.46 Aligned_cols=268 Identities=12% Similarity=0.174 Sum_probs=174.0
Q ss_pred cceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh-
Q 016020 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI- 165 (396)
Q Consensus 89 S~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~- 165 (396)
.+|.+|=+. -+.+++=++.-.-+.||..+|+..|.||--..-+=+ +=|=.-..++|--|. +.| -.++|-++.-
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~-~~Fth~~~~~i~sSt-k~d--~tIryLsl~dN 90 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDL-ACFTHHSNTVIHSST-KED--DTIRYLSLHDN 90 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccE-EEEecCCceEEEccC-CCC--CceEEEEeecC
Confidence 344444444 234444466667899999999999999976443322 223345566666554 233 2355555432
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEec
Q 016020 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR 245 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~ 245 (396)
.||| -|..-. +.=-.++-++++ ..-.+++.|+++|.|||+.-++.--+.-..=--+++.|.=.++...-
T Consensus 91 kylR---------YF~GH~-~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 91 KYLR---------YFPGHK-KRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred ceEE---------EcCCCC-ceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence 1222 222100 001145566766 55667888999999999977765555443333455665433333333
Q ss_pred CCCeeeeEEEEeec--CcEEEEEEeecccCC---ccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCc
Q 016020 246 SSSHVPLKILSIED--GTVLKVFYHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPS 317 (396)
Q Consensus 246 ~~~~iplkIl~Iet--G~~l~s~~~~L~~sk---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~Ps 317 (396)
..+ .+||+|+-. +.+--+|...-+... .|+|.. .|.+||+--+++.+.++|-=+|.++. ..+.....|-
T Consensus 160 ~~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 160 GSE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred CCC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 322 889999875 444445554322333 399999 99999999999999999999999877 4555666778
Q ss_pred eEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeecc-ccccCCC---CCCCcEEEccCCcEEE
Q 016020 318 AFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFED-HLLWHPD---CNTNNIYITSDQDLII 374 (396)
Q Consensus 318 AFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fed-h~l~~~~---c~~n~~~it~~qd~ii 374 (396)
...|.||++-+|+=++ |+|-+|+.+. ..|..+.. +.-..+. =|--..|+|++.-|.+
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~f 299 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVF 299 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEE
Confidence 9999999999999999 9999999976 67777776 3333222 3444578888877765
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=95.23 Aligned_cols=181 Identities=17% Similarity=0.295 Sum_probs=142.3
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceE---EEEeccC-ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDK-HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---lysIs~~-~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|+--|-.+|+.+|.++. ..+-+|||++.+. |....+. .|..++-||++.+|.-.-+ +..++||+.++++++-.
T Consensus 26 ~~~~~~~~Gr~va~~a~-E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYa--DGsVqif~~~s~~~~~t 102 (888)
T KOG0306|consen 26 FVVKRSGKGRAVAVSAL-EQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYA--DGSVQIFSLESEEILIT 102 (888)
T ss_pred EEEeecCCCcEEEEecc-ccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEec--CceEEeeccCCCceeee
Confidence 55566667999886554 5688999999954 4444445 8999999999999998888 78899999999998888
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
|+ +|.+- ++|-. .|-.|+.+..|..|-+|||..-..+-=+++|.+....+.|+.+....++.+. +.|++||+
T Consensus 103 fn---gHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL 178 (888)
T KOG0306|consen 103 FN---GHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDL 178 (888)
T ss_pred ec---ccccceEEEEEcc-cCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEec
Confidence 88 67666 56655 8999999999999999999998888889999999999999998888887776 89999999
Q ss_pred ccc--eee-eeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 342 RGE--LVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 342 ~ge--L~t-~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.-+ ..| -.+.-.-|+. |...+.-||+.-|.=+-..+
T Consensus 179 ~tqhCf~Thvd~r~Eiw~l-~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 179 ETQHCFETHVDHRGEIWAL-VLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred ccceeeeEEecccceEEEE-EEecceEEEEecCCceEEEE
Confidence 886 333 3344445543 55557777766554443333
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=94.14 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=123.2
Q ss_pred CCcEEEeecCCCeEEEEeccCc--eEEEEecc--CceEEEEE-cCCeEEEEEecCCCeeeeEEEEeecC--cEEEEEEee
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHL 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknY--s~lysIs~--~~VqEIki-Spg~~Ll~~q~~~~~iplkIl~IetG--~~l~s~~~~ 269 (396)
||+.+.+.++|.++|||+..-. .++-.|-. +=|+++.. -+...|.++.+- +--+.||||.+| +.+++++..
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL--D~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL--DRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC--CccEEEEEccCcchhhhhhcccc
Confidence 6889999999999999998766 56666655 77888888 677777666655 889999999999 567766622
Q ss_pred ----ccc-CCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 270 ----LHR-NKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 270 ----L~~-sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
|.. .++ ++ +-|.+--|+.+--.+-|++||.++++.+-=+++|.+-.++.+-+.+|.-.|+-|+ |||++|
T Consensus 162 t~~sl~sG~k~siYSLA-~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLA-MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred ccccCCCCCccceeeee-cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 221 111 22 2234445666677888999999997777666799999999999999988888777 999999
Q ss_pred ecccc--eee-eeccccccCCCCCCC
Q 016020 340 NFRGE--LVT-SFEDHLLWHPDCNTN 362 (396)
Q Consensus 340 d~~ge--L~t-~fedh~l~~~~c~~n 362 (396)
|+.-+ +.| -.-+.-.|+..|+++
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCC
Confidence 99886 555 333445888887654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.8e-06 Score=75.62 Aligned_cols=128 Identities=13% Similarity=0.227 Sum_probs=93.4
Q ss_pred EEEEeccC-ceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecC---Ce
Q 016020 220 MLYSISDK-HVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---EN 294 (396)
Q Consensus 220 ~lysIs~~-~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~ 294 (396)
...++..+ .|.++.+||. -.+++..+.. ...+.||+++ |+.+.++.. ..-+.|.|.+ .|.+|++.-.+ +.
T Consensus 52 ~~i~l~~~~~I~~~~WsP~g~~favi~g~~-~~~v~lyd~~-~~~i~~~~~--~~~n~i~wsP-~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 52 ESIELKKEGPIHDVAWSPNGNEFAVIYGSM-PAKVTLYDVK-GKKIFSFGT--QPRNTISWSP-DGRFLVLAGFGNLNGD 126 (194)
T ss_pred ceeeccCCCceEEEEECcCCCEEEEEEccC-CcccEEEcCc-ccEeEeecC--CCceEEEECC-CCCEEEEEEccCCCcE
Confidence 44445443 4999999984 4444443321 2389999996 888877652 3344699998 89999998754 45
Q ss_pred eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-------cCeEEEEecccceeeeeccccc
Q 016020 295 LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFEDHLL 354 (396)
Q Consensus 295 L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-------~gti~iWd~~geL~t~fedh~l 354 (396)
|.+||+.+.+++...... .....-|.|+++.|+|.. ++.++||+++|+++...+-..|
T Consensus 127 l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l 191 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDEL 191 (194)
T ss_pred EEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecchhhh
Confidence 999999998888764433 367889999999999986 5789999999987765443333
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=92.90 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=125.7
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+.|.- ....||..+||+-+|||..+++.+|-.+.. +.|.++.+| +++.+| ++..+-.++|-++..|+.|++|
T Consensus 269 i~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL---S~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 269 ISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL---SASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred Eeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh---cccccceEEEeccccchhHHHh
Confidence 55665 567889999999999999999999998884 999999999 566653 3344688999999999999999
Q ss_pred EeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe--cccccCCCceEEEeecCeEEEEEEc--CeEEEE
Q 016020 267 YHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFRN--RTVAVW 339 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--~~t~~~~PsAFiFly~~qLFLTfs~--gti~iW 339 (396)
+ +|++. .-|-. .|.+|+...-|+.+++|+..+.+|..+ +.+...+.-..|-+|-+---+.+.| +++-|-
T Consensus 345 r---GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 345 R---GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred c---CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 9 88877 45776 999999999999999999999999863 3344556667777787665555555 799999
Q ss_pred ecccceeeeecc
Q 016020 340 NFRGELVTSFED 351 (396)
Q Consensus 340 d~~geL~t~fed 351 (396)
+.+|+.|.+|.-
T Consensus 421 n~qGQvVrsfsS 432 (508)
T KOG0275|consen 421 NMQGQVVRSFSS 432 (508)
T ss_pred eccceEEeeecc
Confidence 999999999863
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-06 Score=90.37 Aligned_cols=168 Identities=11% Similarity=0.170 Sum_probs=139.3
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE-EEEeecccCCc
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKK 275 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~-s~~~~L~~sk~ 275 (396)
-++...+.|..+|||++.+|+.+....+ +-+-.|.+-|-.-.+++.+. +|.+|+|+-|.+=... .|. +|+-.
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD--Dm~iKlW~we~~wa~~qtfe---GH~Hy 142 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD--DMTIKLWDWENEWACEQTFE---GHEHY 142 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC--ccEEEEeeccCceeeeeEEc---CcceE
Confidence 3666778999999999999999988887 89999999999998888887 9999999999875544 466 77766
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC--eEEEEEEc-CeEEEEeccc-ceeee
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--QLFLTFRN-RTVAVWNFRG-ELVTS 348 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~--qLFLTfs~-gti~iWd~~g-eL~t~ 348 (396)
|.|.+-+++......=|..+++|.+.+...-.++.+|.--.-+.=|++.+ -..+|-+| .+|+|||.|- +-|++
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence 88999999999999999999999999999999999998888888777644 46778887 8999999999 69999
Q ss_pred eccccccCCC---CCCCcEEEccCCc
Q 016020 349 FEDHLLWHPD---CNTNNIYITSDQD 371 (396)
Q Consensus 349 fedh~l~~~~---c~~n~~~it~~qd 371 (396)
+|+|.-=+.. -|+=.|+||..+|
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCC
Confidence 9999753332 2333445554444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-06 Score=81.75 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=122.0
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
|.-=|..+-|++.+|||||++-++.-++-. +-||.+.+- +|.||.......+-+=-.+++=++-.++....-+..|
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 666678888999999999999986666543 667888775 7888877766655544444443334444443334455
Q ss_pred CCc---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-cee
Q 016020 273 NKK---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELV 346 (396)
Q Consensus 273 sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~ 346 (396)
+.. +-|.+ .+.||..-.-|+..+||+.-+- |+-.+...+--+.---+|+-|++..||-++ +++++||... +.+
T Consensus 215 ~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 215 NGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred cceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 555 67777 9999999999999999999998 777788899888899999999999999998 8999999987 677
Q ss_pred eeeccccc
Q 016020 347 TSFEDHLL 354 (396)
Q Consensus 347 t~fedh~l 354 (396)
.-..+|.-
T Consensus 294 ~qy~gh~K 301 (311)
T KOG0315|consen 294 RQYQGHHK 301 (311)
T ss_pred eecCCccc
Confidence 77777753
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-06 Score=85.56 Aligned_cols=170 Identities=15% Similarity=0.227 Sum_probs=130.9
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEE-------
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF------- 266 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~------- 266 (396)
-.+-+|+++-|+.+||||.+-..+++-+++ .-|.+||+. .|.+ .+.+. +-.+|+|...+|+....+
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli--ySgS~--DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI--YSGSQ--DRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE--EecCC--CceEEEEEccchhHHHhhcccchhe
Confidence 356899999999999999999999999999 899999998 5554 33333 678899988885543211
Q ss_pred -------------------------------------------------------Eeec--------------ccCCc--
Q 016020 267 -------------------------------------------------------YHLL--------------HRNKK-- 275 (396)
Q Consensus 267 -------------------------------------------------------~~~L--------------~~sk~-- 275 (396)
..+| +|++.
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 1111 11222
Q ss_pred -cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 276 -VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 276 -i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
+-|.+ .+-||.....|++++.||.++||-+-+.++|-.++.-.-.+.|+.|.|+-|. .|+++||++- .|+-.+-+|
T Consensus 372 ~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 372 HVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred eEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 67888 9999999999999999999999999999999988888888999999999988 7999999999 477777666
Q ss_pred cc--c-CCCCCCCcEEEccCCc
Q 016020 353 LL--W-HPDCNTNNIYITSDQD 371 (396)
Q Consensus 353 ~l--~-~~~c~~n~~~it~~qd 371 (396)
.= + ++=.||+.-..+...|
T Consensus 451 ~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred CceEEEEEecCCCceeecCCCc
Confidence 32 1 1115555555544444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.2e-06 Score=87.54 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=81.0
Q ss_pred CeeeeEEEEeecCcEEEE-EEeecccCCc-----cchhhhhcceeeEeecCCeeeEEEccc---ceEEEecccccC--CC
Q 016020 248 SHVPLKILSIEDGTVLKV-FYHLLHRNKK-----VDFIEQFNEKLLVKQENENLQILDVRN---AELMEVSRTEFM--TP 316 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s-~~~~L~~sk~-----i~FiE~~~ekLLIKQed~~L~I~Dv~~---~ki~~v~~t~~~--~P 316 (396)
.+..|.||++.+-+.... |+......++ +.|.. .+..|.-+=-|++|||||.++ +-.++|..+|.. ..
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 457899999999776665 7777777666 77887 888888888999999999866 445678899988 88
Q ss_pred ceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 317 SAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
++..|+|+++..|+=+. ++.++||++-
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeeccc
Confidence 99999999999999888 8999999998
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.4e-06 Score=80.97 Aligned_cols=139 Identities=13% Similarity=0.208 Sum_probs=103.2
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE--EEEEEeecccC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV--LKVFYHLLHRN 273 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~--l~s~~~~L~~s 273 (396)
-+||+..+-|.++|+|-+.++.+..+|.. -.|--+.++|+--.|..... --++|+||.++.+ +++|. .++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e---~h~ 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN---QHVRLYDLNSNNPNPVATFE---GHT 83 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC---CeeEEEEccCCCCCceeEEe---ccC
Confidence 68999999999999999999999999987 45556666665444333332 4589999999886 55565 555
Q ss_pred Cc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEE-eecCeEEEEEEcCeEEEEecccc
Q 016020 274 KK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LYENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 274 k~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF-ly~~qLFLTfs~gti~iWd~~ge 344 (396)
|. |-|-+ .|.-++.+.||+.++|||+++-.+.+...-. .+.-..+- =...+||..=.+|-|.|||+.-+
T Consensus 84 kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 84 KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 55 77876 9999999999999999999996666543222 22222222 23567888888899999998754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.6e-05 Score=76.95 Aligned_cols=183 Identities=15% Similarity=0.239 Sum_probs=147.6
Q ss_pred eecccCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEE
Q 016020 181 ESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 181 ~~~~l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkI 254 (396)
..+--.|-||+ +|=| ++-|||. +-|.+.-+||.++.+++-++.+ -+|..+.++| ....+++..- +...||
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~-SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c--D~~akl 213 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTG-SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC--DKSAKL 213 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEec-CCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc--ccceee
Confidence 33445677776 4555 6888885 4589999999999999999988 8999999999 7777777776 889999
Q ss_pred EEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeecCeEEE
Q 016020 255 LSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~~qLFL 329 (396)
||+-.|...-+|. .|..+ |.|-+ .|.-+..+.+|+..+.||++..+-+. -+..........-|+--+.|.+
T Consensus 214 WD~R~~~c~qtF~---ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 214 WDVRSGQCVQTFE---GHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred eeccCcceeEeec---ccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence 9999999999998 77666 78988 99999999999999999999944333 3455666778888999999988
Q ss_pred E-EEcCeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 330 T-FRNRTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 330 T-fs~gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
. ..+.++.+||.=- +.++.+++|.-=+. -|||+...-|..-|
T Consensus 290 agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 290 AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred eeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 8 7789999999754 89999988854332 38888877765433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-05 Score=65.11 Aligned_cols=147 Identities=17% Similarity=0.296 Sum_probs=108.1
Q ss_pred EEEeecC-CCeEEEEeccC-ceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 200 VLTYSAQ-DSIYKVFDLKN-YTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 200 Ilt~~a~-d~~YrVwdlkn-Ys~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
.++..+. |+.+++||..+ ...+..+.. +.|..+.++|+.-.++.... ....+++|++.+++.+..+.. |...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~ 200 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAG---HTDP 200 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeecc---CCCc
Confidence 5555444 99999999998 766665555 88999999988864444432 578999999999988888873 4444
Q ss_pred ---cchhhhhcceeeEe-ecCCeeeEEEcccceEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccce--ee
Q 016020 276 ---VDFIEQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGEL--VT 347 (396)
Q Consensus 276 ---i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL--~t 347 (396)
+.|.+ .+..+++. -.|..+++||..+++... ....+.... .-.|.++++++++.+. +++.+||..... ..
T Consensus 201 v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 201 VSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred eEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 77773 55545555 789999999999888888 566666654 3379999877775555 999999999732 33
Q ss_pred eeccc
Q 016020 348 SFEDH 352 (396)
Q Consensus 348 ~fedh 352 (396)
.+..|
T Consensus 279 ~~~~~ 283 (466)
T COG2319 279 TLSGH 283 (466)
T ss_pred EEecC
Confidence 33444
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.2e-06 Score=89.02 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=127.4
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC---------c-------------------e-----------------------
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---------Y-------------------T----------------------- 219 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn---------Y-------------------s----------------------- 219 (396)
.+|.. -||-||...+|+.+|||-..+ | +
T Consensus 273 mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p 351 (712)
T KOG0283|consen 273 MKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP 351 (712)
T ss_pred EEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence 58988 899999999999999999888 0 0
Q ss_pred -EEEEecc----------CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcce
Q 016020 220 -MLYSISD----------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEK 285 (396)
Q Consensus 220 -~lysIs~----------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ek 285 (396)
..+.|++ .+|.|+-||..=+|| +.+. +..++||.+..-++|+.|.| +.. |+|.+.+..|
T Consensus 352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLL-SSSM--DKTVRLWh~~~~~CL~~F~H----ndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 352 LKAFVFSEKPFCEFKGHTADILDLSWSKNNFLL-SSSM--DKTVRLWHPGRKECLKVFSH----NDFVTCVAFNPVDDRY 424 (712)
T ss_pred CccccccccchhhhhccchhheecccccCCeeE-eccc--cccEEeecCCCcceeeEEec----CCeeEEEEecccCCCc
Confidence 1222332 578889999887764 4444 58999999999999999983 344 9999999999
Q ss_pred eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeecccc
Q 016020 286 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 286 LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~ 353 (396)
.+.+.-|+-+|||+|...+...=...+ .-..|.-|.|+||..+.=+- |.|.+|+++| .+++++.=+.
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999999999999999998866665 67899999999999888777 9999999999 6888665443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=88.12 Aligned_cols=224 Identities=21% Similarity=0.262 Sum_probs=169.3
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC---CC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK---PD 174 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk---~~ 174 (396)
.-+|+.-..+|--.+||..+.. +|..=+.++..|=||=.-..|.-.+|+|+-..=.|=.++--.- +---+.| +.
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLK 500 (888)
T ss_pred CceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec--cCcccceeeeec
Confidence 4466777788888889887664 5666668999999999999999999988654333322221110 0000000 00
Q ss_pred -CCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeee
Q 016020 175 -SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVP 251 (396)
Q Consensus 175 -~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ip 251 (396)
....=++.+.|. |++.| +||-||-+.-|++.+||-|-+.++-.++-+ --|.+|.|||++-|++..++ +..
T Consensus 501 ~~rtLel~ddvL~----v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA--DKn 573 (888)
T KOG0306|consen 501 HTRTLELEDDVLC----VSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA--DKN 573 (888)
T ss_pred cceEEeccccEEE----EEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC--CCc
Confidence 011233444443 67777 899999999999999999999999999998 88999999999999999999 788
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+|||++.=|.+=++|- +|.+..-..-|+|...+|+|-
T Consensus 574 VKiWGLdFGDCHKS~f-------------------------------------------AHdDSvm~V~F~P~~~~FFt~ 610 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFF-------------------------------------------AHDDSVMSVQFLPKTHLFFTC 610 (888)
T ss_pred eEEeccccchhhhhhh-------------------------------------------cccCceeEEEEcccceeEEEe
Confidence 8888888888888766 778888889999999999999
Q ss_pred Ec-CeEEEEeccc-ceeeeeccccc--cCCC-CCCCcEEEccCCcEEE
Q 016020 332 RN-RTVAVWNFRG-ELVTSFEDHLL--WHPD-CNTNNIYITSDQDLII 374 (396)
Q Consensus 332 s~-gti~iWd~~g-eL~t~fedh~l--~~~~-c~~n~~~it~~qd~ii 374 (396)
+. |.|+=||-.- +.+..++.|.+ |.+- -|++.+-+|+..|-=|
T Consensus 611 gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 611 GKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred cCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCcee
Confidence 87 9999999888 88889999976 4333 6677777777666444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.8e-06 Score=84.60 Aligned_cols=218 Identities=15% Similarity=0.219 Sum_probs=158.7
Q ss_pred hhhhhccccceeeeccccceEE---EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 101 VFALAHSGVCAAFSRETNRRIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic---~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
++.-++||- |..++| ..| +|+-.+|..||++=+..+...+|. .|..-.+|----...-++.=+-
T Consensus 111 Lltgs~SGE---FtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS-----gD~gG~iKyWqpnmnnVk~~~a---- 177 (464)
T KOG0284|consen 111 LLTGSQSGE---FTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMIS-----GDKGGMIKYWQPNMNNVKIIQA---- 177 (464)
T ss_pred eEeeccccc---EEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEE-----cCCCceEEecccchhhhHHhhH----
Confidence 344466665 444445 334 789999999999999999999887 3443444433222222211000
Q ss_pred cceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
=.++.++- +-|.+ |.-.-+.++.|+++||||-..++..=.|++ =+|..+.+-|--=|++..+..+ ++|+|
T Consensus 178 --hh~eaIRd---lafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKlW 249 (464)
T KOG0284|consen 178 --HHAEAIRD---LAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKLW 249 (464)
T ss_pred --hhhhhhhe---eccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--eeEee
Confidence 01244442 45677 566666678899999999999998888887 8899999999999999999977 99999
Q ss_pred EeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEE
Q 016020 256 SIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTF 331 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTf 331 (396)
|=-+|.++.++- +|..- +.|.. .+.+||...+|++++++|+++-|=+.+.++|.....+.-..| .-.||.|-
T Consensus 250 DprSg~cl~tlh---~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 250 DPRSGSCLATLH---GHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred cCCCcchhhhhh---hccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 999999999865 45443 78888 669999999999999999997666667787777776665544 23455555
Q ss_pred E-cCeEEEEeccc
Q 016020 332 R-NRTVAVWNFRG 343 (396)
Q Consensus 332 s-~gti~iWd~~g 343 (396)
- +|.|..|.+.+
T Consensus 326 g~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 326 GSDGSVVHWVVGL 338 (464)
T ss_pred cCCCceEEEeccc
Confidence 4 49999999986
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=86.22 Aligned_cols=180 Identities=15% Similarity=0.222 Sum_probs=127.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-++||.. ++.+.+.++|+..++|+.-++..+=.+++ +.|.++++.-+..-.+...+ +..+|+||++.+.+.++.-
T Consensus 224 ~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~--DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 224 SIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA--DRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred eeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccc--cchhhhhhhhhhheecccc
Confidence 4788884 55555567899999999999999988888 99999999988886677776 8999999999988877421
Q ss_pred --------------eec-ccCCccchhh----------------------hhcceeeEeecCCeeeEEEcccceEEEecc
Q 016020 268 --------------HLL-HRNKKVDFIE----------------------QFNEKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 268 --------------~~L-~~sk~i~FiE----------------------~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
..= |--++|.|.. ..+--||.-..|.+|+++|+++.++..+..
T Consensus 301 ~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s 380 (459)
T KOG0288|consen 301 PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS 380 (459)
T ss_pred ccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence 000 1112244443 123345666788889999999988888655
Q ss_pred cccCC----CceEEEeecCeEEEEEEc-CeEEEEecccc-ee----eeecc-ccccCCCCCCCcEEEccCCcE
Q 016020 311 TEFMT----PSAFIFLYENQLFLTFRN-RTVAVWNFRGE-LV----TSFED-HLLWHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 311 t~~~~----PsAFiFly~~qLFLTfs~-gti~iWd~~ge-L~----t~fed-h~l~~~~c~~n~~~it~~qd~ 372 (396)
+..+- -.+.+|+|++.+..+=|. |.|.||++.+. +. .+=+. .+....-|+.+..-+++|++-
T Consensus 381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 54332 467899999999999887 99999999983 22 22222 111112267777777777654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00032 Score=72.05 Aligned_cols=321 Identities=16% Similarity=0.196 Sum_probs=202.4
Q ss_pred CcccchhhhhhhhhhhcccCCccee--------ccchhHHhhcccc------eeee-eccCCCCCccccccccccccceE
Q 016020 28 SDGFVNSVKKLQRREICSKRDRAFS--------ISNAQERFRNMHL------VEEY-DTHDPKGHCPFVLPFLMKRTKVI 92 (396)
Q Consensus 28 ~~~~~nsvrKlqrREI~~~~~ra~s--------~~~~~e~frn~~l------~~~~-D~~d~~~~~~~~~~~l~~RS~V~ 92 (396)
+.+..+.|-||-+.|=+....+-|- .++-.|--+..++ .-|| .-+.|+... .+++ .--=|-
T Consensus 34 r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl---~~~~-hdDWVS 109 (423)
T KOG0313|consen 34 RYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPL---QCFL-HDDWVS 109 (423)
T ss_pred EccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcc---cccc-chhhhh
Confidence 4567888889988887655555441 1333333333332 2223 445553322 1111 112233
Q ss_pred EEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC
Q 016020 93 EIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (396)
Q Consensus 93 EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk 172 (396)
-|=.|.+.|+-=++-|+.+.+|+. |+-+-.+=...+-+-...+++++..+--+|| +|-+ +.|.=-.+.-......-
T Consensus 110 sv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs--as~D-qtl~Lw~~~~~~~~~~~ 185 (423)
T KOG0313|consen 110 SVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS--ASMD-QTLRLWKWNVGENKVKA 185 (423)
T ss_pred hhcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEE--ecCC-ceEEEEEecCchhhhhH
Confidence 334456888889999999999976 8877777766666666889998777666643 4444 44444444322221100
Q ss_pred CCCCCcceeecccCCCCeEE---eeCCCCcEEEeecCCCeEEEEecc-------------------------CceEEEEe
Q 016020 173 PDSGFALFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLK-------------------------NYTMLYSI 224 (396)
Q Consensus 173 ~~~~~~LF~~~~l~~PgfVE---FDd~NgkIlt~~a~d~~YrVwdlk-------------------------nYs~lysI 224 (396)
. ...-.|-+-|| =+. .|-...+.+-|..+++|+-. .-+.+..+
T Consensus 186 ~--------~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 186 L--------KVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred H--------hHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 0 01114444444 333 45666667889999999911 12256677
Q ss_pred cc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc
Q 016020 225 SD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 225 s~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
.+ +-|..|.++|..++.-..-. =.+|.||+++|+..-++.-. ..-..|+... ....|+.+.-|..|++||-++
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwD---HTIk~WDletg~~~~~~~~~-ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWD---HTIKVWDLETGGLKSTLTTN-KSLNCISYSP-LSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccccceeeEEEcCCCceEeeccc---ceEEEEEeecccceeeeecC-cceeEeeccc-ccceeeecCCCCceeecCCCC
Confidence 77 88999999986665444443 57899999999988765410 1112277777 778888899999999999998
Q ss_pred c--eEEE-ecccccCCCceEEEeecCeE-EEEEEc-CeEEEEecccc--eeeeeccc---cccCCCCCCCcEEEccCCc
Q 016020 303 A--ELME-VSRTEFMTPSAFIFLYENQL-FLTFRN-RTVAVWNFRGE--LVTSFEDH---LLWHPDCNTNNIYITSDQD 371 (396)
Q Consensus 303 ~--ki~~-v~~t~~~~PsAFiFly~~qL-FLTfs~-gti~iWd~~ge--L~t~fedh---~l~~~~c~~n~~~it~~qd 371 (396)
+ +... ..-+|..+.++.-..++++. |++.|. |++++||++.. -.-.+..| +|-+ +=++....+|..+|
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v-dW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV-DWNEGGLIVSGGAD 409 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE-eccCCceEEeccCc
Confidence 4 3333 66789999999999998765 788887 99999999993 34444444 3322 13445566666666
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.8e-05 Score=76.87 Aligned_cols=161 Identities=14% Similarity=0.205 Sum_probs=117.2
Q ss_pred cCCCCe---EEeeCCCCcEEEeecCCCeEEEEec----cCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 185 LKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDL----KNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 185 l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdl----knYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
..|+|= .+|++ +|--+|....|..+-+|+. +||--+. .-.-.|+|+++..+.-.++..++ +..+..||+
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gt--Dk~v~~wD~ 119 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGT--DKTVRGWDA 119 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecC--CceEEEEec
Confidence 445554 58999 9999999999999999984 4444444 33389999999976666677777 789999999
Q ss_pred ecCcEEEEEEeecccCCccchhh--hhc-ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEc
Q 016020 258 EDGTVLKVFYHLLHRNKKVDFIE--QFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN 333 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~i~FiE--~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~ 333 (396)
|+|+..+.++ .|++-+.=+. ..| +-+-..|+|..+++||+++++.+++... ..+--||-|..++ |.+-.-=|
T Consensus 120 ~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 120 ETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 9999999877 5555532221 123 3445688999999999999999987533 3456788887755 45555667
Q ss_pred CeEEEEeccc-ceeeeecccc
Q 016020 334 RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~ 353 (396)
+.|++||.+- +..-.+++|.
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~ 216 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHA 216 (338)
T ss_pred CceeeeccccCcceEEeeccc
Confidence 8999999955 3333445543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.8e-06 Score=90.34 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=129.2
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
||+.+-+=-| +-|-+ .--++..+.+.|.++.||++=..+|=++.+ --|--|.|-|.-=|+++.+. +..+|+|+-
T Consensus 5 fEskSsRvKg-lsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD--DykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKG-LSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD--DYKIKVWNY 80 (1202)
T ss_pred hhcccccccc-eecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC--ccEEEEEec
Confidence 5555444222 45666 455666688999999999999999988876 55888999999999899888 999999999
Q ss_pred ecCcEEEEEEeecccCCccchhhhhcce--eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C
Q 016020 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R 334 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~i~FiE~~~ek--LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g 334 (396)
.+-+++.++. +|--.|.=.--+.|| ||..++|+.|+|||..+++++.++.+|.--+-+.-|.|.-.|.++.|= -
T Consensus 81 k~rrclftL~---GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 81 KTRRCLFTLL---GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ccceehhhhc---cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 9999998766 554443222223444 899999999999999999999999999999999999999999999997 7
Q ss_pred eEEEEeccc
Q 016020 335 TVAVWNFRG 343 (396)
Q Consensus 335 ti~iWd~~g 343 (396)
||+|||..|
T Consensus 158 TVRVWDisG 166 (1202)
T KOG0292|consen 158 TVRVWDISG 166 (1202)
T ss_pred eEEEEeecc
Confidence 999999998
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.2e-05 Score=79.83 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=138.2
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+||- =+..-++.+.-||+-+.+++|.++. -.+|.|.++|.--.+.-.-..+ -+.++++..|+..+... |.+.+
T Consensus 80 ~~RL-FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG--vl~~~s~~p~~I~~~r~--l~rq~ 154 (691)
T KOG2048|consen 80 GGRL-FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG--VLYDFSIGPDKITYKRS--LMRQK 154 (691)
T ss_pred CCeE-EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc--eEEEEecCCceEEEEee--ccccc
Confidence 5654 4455688999999999999999887 8899999998765444443433 78889999999888765 34543
Q ss_pred c----cchhhhhcceeeEeecCCeeeEEEcccceEEEe--------cccccCCCceEEEeecCeEEEEEEcCeEEEEecc
Q 016020 275 K----VDFIEQFNEKLLVKQENENLQILDVRNAELMEV--------SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 342 (396)
Q Consensus 275 ~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--------~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~ 342 (396)
. +.|-. .+-+|..+.+|+-|+|||+.++...++ ++.+.--.-+.+||.++++-=-=|-|+|++||..
T Consensus 155 sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 155 SRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred ceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc
Confidence 2 78877 888999999999999999999877762 2223344557899999998777777999999998
Q ss_pred c-ceeeeeccccccCC----CCCCCcEEEccCCcEEEEeccCCCCCccc
Q 016020 343 G-ELVTSFEDHLLWHP----DCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (396)
Q Consensus 343 g-eL~t~fedh~l~~~----~c~~n~~~it~~qd~ii~~~~~~~~~~~~ 386 (396)
- .|+-++.=|.-.+. +-+.|.+|++.=+-=||=|=-.....+|.
T Consensus 234 ~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv 282 (691)
T KOG2048|consen 234 FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWV 282 (691)
T ss_pred CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcccee
Confidence 7 78888776665544 35667788887777777775544444453
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=79.91 Aligned_cols=125 Identities=13% Similarity=0.219 Sum_probs=95.9
Q ss_pred EEEEecc---CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcceeeEeec
Q 016020 220 MLYSISD---KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 220 ~lysIs~---~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
.-|+|.. +-|++++||| .-.||...+= +-.++||++|+ |.... +-..-++++ +.+.+ .|.|.++..-
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SW--D~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsd-dgskVf~g~~ 92 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSW--DGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSD-DGSKVFSGGC 92 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEeccc--CCceEEEEEecCCcccc--hhhhccCCCeEEEEEcc-CCceEEeecc
Confidence 4455554 8899999999 3333334444 57889999999 34333 211133333 89999 9999999999
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecCe--EEEEEEc-CeEEEEeccc-ceeeeec
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--LFLTFRN-RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q--LFLTfs~-gti~iWd~~g-eL~t~fe 350 (396)
|+.+++|||.+++...| ..|..+.+.-+|+.... +.+|=|+ -|+++||.+. ..+++++
T Consensus 93 Dk~~k~wDL~S~Q~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred CCceEEEEccCCCeeee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence 99999999999999887 58999999999988766 7888888 7999999999 4666543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.8e-06 Score=83.45 Aligned_cols=197 Identities=16% Similarity=0.209 Sum_probs=148.5
Q ss_pred cceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCC
Q 016020 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (396)
Q Consensus 118 ~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~N 197 (396)
||--|-+| +| =.-..-+-||+. ..|-.|+--...++..|-|...- ++.+ --++... |
T Consensus 93 NKvkc~V~-----~v---~WtPeGRRLltg--s~SGEFtLWNg~~fnFEtilQaH----------Ds~V--r~m~ws~-~ 149 (464)
T KOG0284|consen 93 NKVKCPVN-----VV---RWTPEGRRLLTG--SQSGEFTLWNGTSFNFETILQAH----------DSPV--RTMKWSH-N 149 (464)
T ss_pred ccccccee-----eE---EEcCCCceeEee--cccccEEEecCceeeHHHHhhhh----------cccc--eeEEEcc-C
Confidence 77777666 33 355666788884 45556666666666666554421 1111 1356666 9
Q ss_pred CcEEEeecCCCeEEEEec--cCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 198 GKVLTYSAQDSIYKVFDL--KNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdl--knYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
|.++.+..+++++|+|+. .|-+..|.=.+|.|.++++||.=.-++..+. +-.++|||-.-+++.--+. +|+-+
T Consensus 150 g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd--Dg~ikiWdf~~~kee~vL~---GHgwd 224 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD--DGTIKIWDFRMPKEERVLR---GHGWD 224 (464)
T ss_pred CCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecC--CCeEEEEeccCCchhheec---cCCCC
Confidence 999999999999999974 4555555555699999999976554455554 6788999999888866554 55544
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+|.=+ .-..|.+..+|..+++||-++++++.++-.|..+.-+..|.++++..+|.|. -+++++|.+.
T Consensus 225 VksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 225 VKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred cceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 55555 4456788889999999999999999999999999999999999999999998 6999999994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=76.80 Aligned_cols=243 Identities=17% Similarity=0.154 Sum_probs=154.0
Q ss_pred ccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeeccc
Q 016020 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL 185 (396)
Q Consensus 106 ~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l 185 (396)
-+|.-.+|..-|+.-.|.|--.-+++.= ++.-. ...|. .+.+++ -++=|-.+|=+ +-..+|..-..
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~dieW-l~WHp--~a~il--lAG~~D-GsvWmw~ip~~--------~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVEDIEW-LKWHP--RAHIL--LAGSTD-GSVWMWQIPSQ--------ALCKVMSGHNS 191 (399)
T ss_pred CCccEEEEEcccCceEEEeecccCceEE-EEecc--cccEE--EeecCC-CcEEEEECCCc--------ceeeEecCCCC
Confidence 4666667776667666666544444443 33333 33344 444555 23444444321 01122222000
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
. =--=||=+. ||-+.--..|+++||||+|+.+.+..++. -....+.++-.--+++.... ..+.++.+.-+|+.
T Consensus 192 ~-ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~--e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 192 P-CTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS--EGVACGVNNGSGKV 267 (399)
T ss_pred C-cccccccCC-CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC--CccEEEEccccceE
Confidence 0 001144443 66665566699999999999999999995 34556666655555555555 68999999999999
Q ss_pred EEEEE----eecccC----Cccchhhhhccee---eEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 263 LKVFY----HLLHRN----KKVDFIEQFNEKL---LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 263 l~s~~----~~L~~s----k~i~FiE~~~ekL---LIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+..++ ++.+.. ..|+|++ +..+| .++.=|+.|-|||+.+.++++.-.-+ ...--..|+++--||-.-
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~-~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he-~~V~~l~w~~t~~l~t~c 345 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIP-SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE-DGVTKLKWLNTDYLLTAC 345 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcc-cccccchhhcccccceEEEEecccchhheeccCC-CceEEEEEcCcchheeec
Confidence 99877 121221 1288888 55555 45668999999999999988754433 335566788866666666
Q ss_pred EcCeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEcc
Q 016020 332 RNRTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 332 s~gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
.+|+|..||.+- +|+...-+|.--.++ .++.+..||.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 679999999987 999999999876665 4444444443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=62.25 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=100.7
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc----eEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeec
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY----s~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Iet 259 (396)
.+|.++-||+.+..+.+.+..++.+.|||+.+. +.+..+.. .+...+.++|+- .|++..-. .-.+.+|++.+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~ 157 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSD 157 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECC
Confidence 479999999855556666667999999999642 23344443 567888999754 55454443 34689999987
Q ss_pred CcEEEE-----EEeecccC-CccchhhhhcceeeEeec-CCeeeEEEcc--cceEEEe---c---cc--ccCCCceEEEe
Q 016020 260 GTVLKV-----FYHLLHRN-KKVDFIEQFNEKLLVKQE-NENLQILDVR--NAELMEV---S---RT--EFMTPSAFIFL 322 (396)
Q Consensus 260 G~~l~s-----~~~~L~~s-k~i~FiE~~~ekLLIKQe-d~~L~I~Dv~--~~ki~~v---~---~t--~~~~PsAFiFl 322 (396)
+..+.. .....+.. ..+.|.+ .+.++++-.+ ++.|.+||+. ++++..+ . .+ ..-+|.+..|.
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 444321 11111111 1278886 8899988877 9999999997 3444221 1 11 11245568899
Q ss_pred ecCe-EEEEEEc-CeEEEEeccc
Q 016020 323 YENQ-LFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 323 y~~q-LFLTfs~-gti~iWd~~g 343 (396)
++++ ||++-+. ++|.+|+.+.
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEeC
Confidence 9876 4555443 8999999854
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=71.34 Aligned_cols=208 Identities=15% Similarity=0.190 Sum_probs=146.3
Q ss_pred cceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceee---eEeeehhhhhhCCCCCCCcceeeccc
Q 016020 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLK---CRSTKIEYIRRGKPDSGFALFESESL 185 (396)
Q Consensus 109 ~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~---cr~~~~~~i~~gk~~~~~~LF~~~~l 185 (396)
.|..||-.|||-+=-+ +.+.-.|-++=||. +|=|++| +|++ ++|+ ||+-+.|=|+- ++ -|.+..
T Consensus 82 ~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~S--gsfD-~s~r~wDCRS~s~ePiQi--ld----ea~D~V- 148 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVAS--GSFD-SSVRLWDCRSRSFEPIQI--LD----EAKDGV- 148 (307)
T ss_pred eEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEe--cccc-ceeEEEEcccCCCCccch--hh----hhcCce-
Confidence 5778999999876544 45666778888996 5666644 6777 5554 67665443322 00 011111
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
--. ++++--+...+.|++||.|||+.+.+.----+.-|.++.+|++....+...- .-.++++|=+|||.|++
T Consensus 149 -----~Si-~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l--~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 149 -----SSI-DVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL--DSTLRLLDKETGKLLKS 220 (307)
T ss_pred -----eEE-EecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec--cceeeecccchhHHHHH
Confidence 112 3456666668889999999999999876666699999999988777666655 45789999999999998
Q ss_pred EEeecccCCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC-CceEEEeecCeEEEEEEcCeEEEEe
Q 016020 266 FYHLLHRNKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 266 ~~~~L~~sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~-PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.+= |.+.+ +.|.+ ..+-.+...||+-+-.||+...+++--.+.+.-. .-..-|-|....|+|.-...+..|-
T Consensus 221 YkG--hkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 221 YKG--HKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred hcc--cccceeeeeeeecc-cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 771 33333 67666 7788899999999999999998877533333222 4455667778888888887777774
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=72.42 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=146.6
Q ss_pred eeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh-CCCCCC-CcceeecccCCC
Q 016020 111 AAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSG-FALFESESLKWP 188 (396)
Q Consensus 111 ~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~-gk~~~~-~~LF~~~~l~~P 188 (396)
.+||..||--+--+ .+.-+||++=+....+.|.|=+ .|-|.| =.++.. -|+. |.-.||
T Consensus 84 kvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg----------------~ekllrvfdln~p~App~--E~~ght 143 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGG----------------QEKLLRVFDLNRPKAPPK--EISGHT 143 (334)
T ss_pred hhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccc----------------hHHHhhhhhccCCCCCch--hhcCCC
Confidence 35677777444322 2344888888888777777722 222322 111111 1333 455677
Q ss_pred Ce---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 189 GF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 189 gf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|= |.||. ..+-+.+++.|+++|.||-++.+..-+|.= -.|....+|++=-+++..-. -.++-||+-+-+.||
T Consensus 144 g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g---ssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 144 GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG---SSVKFWDAKSFGLLK 219 (334)
T ss_pred CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC---ceeEEecccccccee
Confidence 64 68999 555556669999999999999999888875 67777777744333333322 357899999999999
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
+.+. +-+-.-.=++.-.+..+-+-||--+.-||--|++=+.- ..+|+-+.-+..|.|++++|-+=|. |||.+|...
T Consensus 220 s~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 220 SYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred eccC--ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 8772 22222233444557777888999999999999988886 6999999999999999999999887 999999876
Q ss_pred c
Q 016020 343 G 343 (396)
Q Consensus 343 g 343 (396)
.
T Consensus 298 ~ 298 (334)
T KOG0278|consen 298 P 298 (334)
T ss_pred C
Confidence 5
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.5e-05 Score=76.18 Aligned_cols=187 Identities=18% Similarity=0.221 Sum_probs=141.7
Q ss_pred EEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-c
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-V 276 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-i 276 (396)
.|.+.+.|+.+.+||.+.+.++.++.+ -.|.+|.|-|.--|++.-.. +-.|..|++-+|+.-+-++ |.+... |
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~--D~~lr~WNLV~Gr~a~v~~--L~~~at~v 174 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG--DQVLRTWNLVRGRVAFVLN--LKNKATLV 174 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC--CceeeeehhhcCccceeec--cCCcceee
Confidence 788899999999999999999999988 55999999999999888877 8899999999999877666 333333 8
Q ss_pred chhhhhcc-eeeEeecCCeeeEEEcccceEEEecccccCC--CceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccc
Q 016020 277 DFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMT--PSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 277 ~FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~--PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh 352 (396)
.|++ .|+ +.++.|. -|-||-+.+.++. .+.-|+ +.+..|++.+.|++--.|+.|.+||.+. ...+.|..|
T Consensus 175 ~w~~-~Gd~F~v~~~~--~i~i~q~d~A~v~---~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 175 SWSP-QGDHFVVSGRN--KIDIYQLDNASVF---REIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred EEcC-CCCEEEEEecc--EEEEEecccHhHh---hhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 9996 666 4444443 3566766665544 444455 8899999999999999999999999996 466666666
Q ss_pred cccCCC--CC---CCcEEEccCCcEEEEeccCCCC-----CccccCC-CcceeeC
Q 016020 353 LLWHPD--CN---TNNIYITSDQDLIISYCKAEPE-----DQWMEGS-GNSFTCL 396 (396)
Q Consensus 353 ~l~~~~--c~---~n~~~it~~qd~ii~~~~~~~~-----~~~~~~~-~~~~~~~ 396 (396)
--=+-+ .+ +..+.+|+.-|=+|.--+-+-+ .+..|-| +..+|||
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl 303 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCL 303 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCcccee
Confidence 433322 23 3378889988988888777655 3444444 3456775
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=80.76 Aligned_cols=99 Identities=11% Similarity=0.226 Sum_probs=82.4
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
.+-+-.+...|-.+|||++++-.++|++.+ +-|--+-|-+.-=-+++.+. +-.++||+-|+++++.-+. +|+-
T Consensus 62 ~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD--DQTIrIWNwqsr~~iavlt---GHnH 136 (1202)
T KOG0292|consen 62 TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD--DQTIRIWNWQSRKCIAVLT---GHNH 136 (1202)
T ss_pred CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC--CCeEEEEeccCCceEEEEe---cCce
Confidence 344445556789999999999999999998 77888888877766677666 7889999999999999888 8877
Q ss_pred c---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 275 K---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 275 ~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
. -||.+ ..+.|+..+=|+.+++||+.
T Consensus 137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 137 YVMCAQFHP-TEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred EEEeeccCC-ccceEEEecccceEEEEeec
Confidence 7 47777 78888999999999999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=75.39 Aligned_cols=230 Identities=15% Similarity=0.182 Sum_probs=158.1
Q ss_pred hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 016020 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 179 (396)
.++.-.+.|..+.|+ .+|.++-.|+.-..-|.+ |=.|+.-.-|+..+ .|+ +|-+=+-..|.-..-+++
T Consensus 249 ~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~s-lKWnk~G~yilS~~---vD~-------ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 249 LLATGSEDGEARIWN-KDGNLISTLGQHKGPIFS-LKWNKKGTYILSGG---VDG-------TTILWDAHTGTVKQQFEF 316 (524)
T ss_pred eEEEeecCcEEEEEe-cCchhhhhhhccCCceEE-EEEcCCCCEEEecc---CCc-------cEEEEeccCceEEEeeee
Confidence 344455666777775 556677666665555443 66776544344322 222 111111111111111111
Q ss_pred eeec--ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 180 FESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 180 F~~~--~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
=++. -+.|-++.| .+.++.|++++|.-+---....++.+ ..|--||+.|-.+||++.+. ++.||||
T Consensus 317 ~s~~~lDVdW~~~~~--------F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd--D~TlkiW 386 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDE--------FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD--DGTLKIW 386 (524)
T ss_pred ccCCccceEEecCce--------EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC--CCeeEee
Confidence 1111 122333322 35678899999988887777888777 88999999999999888877 9999999
Q ss_pred EeecCcEEEEEE--------eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE
Q 016020 256 SIEDGTVLKVFY--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (396)
Q Consensus 256 ~IetG~~l~s~~--------~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL 327 (396)
+.-++.....+. ..--++.++.=.+-.|.-|+.-..|+.++.||+.++..+++.-.|..++++.-|++++.+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 987765555444 001333667777778999999999999999999999999999999999999999999999
Q ss_pred EEEEEc-CeEEEEeccc-ceeeeecc
Q 016020 328 FLTFRN-RTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g-eL~t~fed 351 (396)
..+=+= |-|-||+.+- +|+.+.-+
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC
Confidence 888665 8999999997 78876544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00042 Score=72.58 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=141.8
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecC-cEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDG-TVL 263 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG-~~l 263 (396)
-++.|++.-+.++.+.+.|+..|+||+-+-.-.+.|++ +-|-...++|. +|+ ++.+= +..+++||+-+- .+.
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv-vtGsY--Dg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV-VTGSY--DGKVRLWDTRSLTSRV 190 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE-EecCC--CceEEEEEeccCCcee
Confidence 37889998999999999999999999998887889999 88999999987 443 44444 689999999886 888
Q ss_pred EEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
++++|-.+ =..|-|++ ++.+++-.-|.++++||+-+|-..-+.. .|.-+..+..+.-+++-.|+-+= |.|++||+
T Consensus 191 ~elnhg~p-Ve~vl~lp--sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 191 VELNHGCP-VESVLALP--SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred EEecCCCc-eeeEEEcC--CCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 89986422 23466666 6678888899999999999654444333 38889999999988888888875 99999995
Q ss_pred cc-ceee--eeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 342 RG-ELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 342 ~g-eL~t--~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.- ..+- .+-.-+|.-.-.++|..-+..=.|.++++=+
T Consensus 268 t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 268 TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred cceEEEEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 54 4554 3444444444467777777777777777763
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00083 Score=74.67 Aligned_cols=237 Identities=18% Similarity=0.272 Sum_probs=159.5
Q ss_pred ccce-eeeccccceEEEecCCCCceEEEEeeecCCC-----eEE----EEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 108 GVCA-AFSRETNRRICFLNVSPDEVIRSLFYNKNND-----SLI----TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 108 G~c~-af~~~t~~~ic~lN~s~~evIrsifyN~~n~-----slI----~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
|+|. +|++ .|++||.-+...+ || + ++.+++ ++= .|+.++-. ++.=|-.+....+.+-+.+++.
T Consensus 15 G~t~i~~d~-~gefi~tcgsdg~--ir-~-~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 15 GLTLICYDP-DGEFICTCGSDGD--IR-K-WKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ceEEEEEcC-CCCEEEEecCCCc--eE-E-eecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 4444 3543 3788888776554 43 1 244444 121 22233322 2344555555666666665554
Q ss_pred c--ceeecccCCCC-eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 178 A--LFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 178 ~--LF~~~~l~~Pg-fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
+ +-.. +.-|- =+-|+. +|+.+|+.+.|-.+||=++.|-+...++-+ ..|..+.+.|.-.+|..... ...+
T Consensus 88 ~~~iL~R--ftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--dG~v 162 (933)
T KOG1274|consen 88 EDTILAR--FTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--DGKV 162 (933)
T ss_pred ccceeee--eeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--CceE
Confidence 2 1111 11121 255666 999999999999999999999999998887 88999999998888887777 6889
Q ss_pred EEEEeecCcEEEEEEeecccCCc--------cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCC--ceEEEe
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP--SAFIFL 322 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~--------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P--sAFiFl 322 (396)
.||++++|+..+.+.-..+.+.. +.|-+ .|..+++---++.+++|+..+.+....+++..... +..-|.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 99999999999987733233221 34445 66677777788899999999999988887766554 334466
Q ss_pred ecCeEEEEEEc--CeEEEEeccc-------ceeeeeccccccCCCCCCC
Q 016020 323 YENQLFLTFRN--RTVAVWNFRG-------ELVTSFEDHLLWHPDCNTN 362 (396)
Q Consensus 323 y~~qLFLTfs~--gti~iWd~~g-------eL~t~fedh~l~~~~c~~n 362 (396)
|.|+ |++.+. |.|.|||.+. ..|+- +-|+|+||-=
T Consensus 242 PnG~-YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~----~aw~p~~n~i 285 (933)
T KOG1274|consen 242 PNGK-YIAASTLDGQILVWNVDTHERHEFKRAVCC----EAWKPNANAI 285 (933)
T ss_pred CCCc-EEeeeccCCcEEEEecccchhccccceeEE----EecCCCCCee
Confidence 7744 555555 9999999994 23332 4699998753
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00034 Score=74.28 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=158.1
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEe------EecCCCceeeeEeee--hhhhhhCCCCCCCcceeecccCCCCeEEee
Q 016020 123 FLNVSPDEVIRSLFYNKNNDSLITVSV------YASDNFSSLKCRSTK--IEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (396)
Q Consensus 123 ~lN~s~~evIrsifyN~~n~slI~vSv------~~sd~~s~L~cr~~~--~~~i~~gk~~~~~~LF~~~~l~~PgfVEFD 194 (396)
.|-|+..-+|+|+=|.-..+.|..||- +--|.|.-+.|---. |.++.. -+|-.-.-+ -.+|-
T Consensus 208 ~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n---TKGHia~lt-------~g~wh 277 (641)
T KOG0772|consen 208 QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN---TKGHIAELT-------CGCWH 277 (641)
T ss_pred ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc---cCCceeeee-------ccccc
Confidence 356677779999999999999999873 445666666554332 333322 122211111 23555
Q ss_pred CCCCcEEEeecCCCeEEEEeccCce-EEEEecc-------CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-
Q 016020 195 DVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV- 265 (396)
Q Consensus 195 d~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s- 265 (396)
+-|..+...++.|++.|+||+.+.+ ++-.|.. ..++.-.|+++--++...= .+..+-||+. |...+.
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc--~DGSIQ~W~~--~~~~v~p 353 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC--LDGSIQIWDK--GSRTVRP 353 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc--cCCceeeeec--CCccccc
Confidence 6677777778999999999999988 5555543 5677778887766633322 3688899987 444432
Q ss_pred -EEeecccCC-----ccchhhhhcceeeEeecCCeeeEEEccc-ceEEEe---cccccCCCceEEEeecCeEEEEEEc--
Q 016020 266 -FYHLLHRNK-----KVDFIEQFNEKLLVKQENENLQILDVRN-AELMEV---SRTEFMTPSAFIFLYENQLFLTFRN-- 333 (396)
Q Consensus 266 -~~~~L~~sk-----~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v---~~t~~~~PsAFiFly~~qLFLTfs~-- 333 (396)
+...-+|+. -|-|.. +|.+||...+|..|++|||++ +|.+.+ +.+. ++-.--.|+|+.+|.||=.+
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-FPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred ceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCcc-CCCCccccCCCceEEEeccccc
Confidence 334445555 288988 999999999999999999999 455543 2222 22233589999999998653
Q ss_pred -----CeEEEEeccc-ceeeeec------cccccCCCCCCCcEEEccCCcEEEEeccC
Q 016020 334 -----RTVAVWNFRG-ELVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 334 -----gti~iWd~~g-eL~t~fe------dh~l~~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
|+.-++|..- ++|..+. -..+|||- -|.||++...-.+=+|+..
T Consensus 432 ~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk--LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 432 NGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK--LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCCCCceEEEEeccceeeEEEecCCCceEEEEeecch--hhheeeecCCCceEEEECc
Confidence 5677888777 6665433 25689875 3456665555555556543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=72.17 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=104.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCc-----eEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
=++|.+.-+-.+++++=|+++|+|++.+- +-++++. .-|.++.||++--..+.... +..+|+|||++|+...
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~-~PvL~v~WsddgskVf~g~~--Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD-GPVLDVCWSDDGSKVFSGGC--DKQAKLWDLASGQVSQ 108 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC-CCeEEEEEccCCceEEeecc--CCceEEEEccCCCeee
Confidence 47888877777778899999999999983 2344444 67999999977776676666 7899999999998776
Q ss_pred EEEeecccCCccchhhhhc-ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEcCeEEEEecc
Q 016020 265 VFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRNRTVAVWNFR 342 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~gti~iWd~~ 342 (396)
-.-|. +.-+-+.|++-.+ +.|+.+.=|+.|+-||.+..+.+-+ ...+-+.+-.--...+ -+.-.++.|.+|+++
T Consensus 109 v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t---~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 109 VAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT---LQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeee---eeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 55443 3334478888776 7889999999999999998776642 1122233333222333 344455788888885
Q ss_pred c
Q 016020 343 G 343 (396)
Q Consensus 343 g 343 (396)
+
T Consensus 185 n 185 (347)
T KOG0647|consen 185 N 185 (347)
T ss_pred C
Confidence 4
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00026 Score=71.51 Aligned_cols=191 Identities=13% Similarity=0.179 Sum_probs=138.6
Q ss_pred CCCCCCCc----ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe---EEE
Q 016020 171 GKPDSGFA----LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI---MLL 241 (396)
Q Consensus 171 gk~~~~~~----LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~---~Ll 241 (396)
|-.++.+| ||.-. .|-|-+.==.|+|+.+|+.+.|.+++++||+.-+++=.+.+ .-|...++.+.. .|
T Consensus 24 ~~~~s~~~~l~~lF~~~--aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL- 100 (362)
T KOG0294|consen 24 GCTDSVKPTLKPLFAFS--AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL- 100 (362)
T ss_pred ccccccceeeecccccc--ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe-
Confidence 34444554 55532 35555666678999999999999999999999998887776 788899998776 44
Q ss_pred EEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhh--cceeeEeecCCeeeEEEcccceEEEecccccCCCceE
Q 016020 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 319 (396)
Q Consensus 242 ~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~--~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAF 319 (396)
++... +.-+.||++-.-+.+++++ +|++.|.++..+ |.--|.=-.|+.|+.||+.+|+--.+.+=.. -+...
T Consensus 101 lS~sd--DG~i~iw~~~~W~~~~slK---~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v 174 (362)
T KOG0294|consen 101 LSGSD--DGHIIIWRVGSWELLKSLK---AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLV 174 (362)
T ss_pred eeecC--CCcEEEEEcCCeEEeeeec---ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceee
Confidence 34333 6788999999999999999 777777777543 4444556699999999999988766544332 34458
Q ss_pred EEeecCeEEEEEEcCeEEEEecccc-eee--eeccccccCCCCCCCcEEEccCC
Q 016020 320 IFLYENQLFLTFRNRTVAVWNFRGE-LVT--SFEDHLLWHPDCNTNNIYITSDQ 370 (396)
Q Consensus 320 iFly~~qLFLTfs~gti~iWd~~ge-L~t--~fedh~l~~~~c~~n~~~it~~q 370 (396)
.|++.+.-|+...-+.|.||.++.. +-. .++...+-++.=+.+.+++..|.
T Consensus 175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC
Confidence 9999999999999999999999884 333 33333444444444444444443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=84.64 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=119.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-+.||. .++.|++.++++++|||||+.-+-+-.+.+ .++..+.|.|-.-.. .+-..+--++|||+-.-.+.+.++
T Consensus 75 Sl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~--a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 75 SLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF--ASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred eeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe--ccccccccceehhhhccCceeeec
Confidence 355666 678899999999999999998886667766 777788888877654 333347789999999888888877
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE-EcCeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf-s~gti~iWd~~g 343 (396)
.|..- +.|.+ .|-++..+-||+.++|||+.-|++.+.=++|--..-+.=|-+..-|.=+- +++++.+||+.-
T Consensus 152 ---s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 152 ---SHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ---CCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 23333 45545 89999999999999999999999985434332222121122222222222 359999999994
Q ss_pred -ceeeeeccccccC---CCCCCCcEEEccCCc
Q 016020 344 -ELVTSFEDHLLWH---PDCNTNNIYITSDQD 371 (396)
Q Consensus 344 -eL~t~fedh~l~~---~~c~~n~~~it~~qd 371 (396)
+++.+.+.-.--+ ..-++..++.+.+|+
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 7776665541111 114566666666664
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.5e-05 Score=79.71 Aligned_cols=146 Identities=21% Similarity=0.320 Sum_probs=119.2
Q ss_pred eEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcceeeEeec
Q 016020 219 TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 219 s~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
+++...++ +.|..|+|.| ...||++.+- +..++||++-+ |+++.+|. +|++. +.|.+ .|..+|....
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gm--D~~vklW~vy~~~~~lrtf~---gH~k~Vrd~~~s~-~g~~fLS~sf 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM--DGLVKLWNVYDDRRCLRTFK---GHRKPVRDASFNN-CGTSFLSASF 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCC--CceEEEEEEecCcceehhhh---cchhhhhhhhccc-cCCeeeeeec
Confidence 35555666 9999999999 8888888777 88999999988 88877777 77776 88988 9999999999
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEE-EEcCeEEEEeccc-ceeeeeccccccCCC---CCCCcEE
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLT-FRNRTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIY 365 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLT-fs~gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~ 365 (396)
|..|++||+-||+++--- +....|.+.=|-+++ ++||+ -+++.|.-||.+. ++|...+.|+--... =++|.-|
T Consensus 279 D~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred ceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 999999999999987532 344567888888877 66665 5679999999998 788899999865444 6788889
Q ss_pred EccCCc
Q 016020 366 ITSDQD 371 (396)
Q Consensus 366 it~~qd 371 (396)
||+..|
T Consensus 358 issSDd 363 (503)
T KOG0282|consen 358 ISSSDD 363 (503)
T ss_pred eeeccC
Confidence 988766
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=72.87 Aligned_cols=156 Identities=16% Similarity=0.286 Sum_probs=118.0
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~ 267 (396)
|+...+++++...++=|+++|+||+.-..-+-...+ .-|-..++||.+-= ++..++++-.++|||+-. |+.+. +.
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ 187 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IE 187 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EE
Confidence 678899999999999999999999987775555555 66778899987764 345566789999999976 55544 43
Q ss_pred eecccCCc---cchhhhhcceee-EeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeE-EEEEEc-CeEEEEe
Q 016020 268 HLLHRNKK---VDFIEQFNEKLL-VKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN-RTVAVWN 340 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLL-IKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~-gti~iWd 340 (396)
.|+.+ ++|.. +++++| .+.-|..+++|||++ +.-+-++.+|....+..-|+|...- .-+.|. =|+.|||
T Consensus 188 ---ah~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 188 ---AHNSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ---eccceeEeecccc-cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 66666 89988 666655 566899999999999 4444566899999999999986554 555555 5999999
Q ss_pred ccc-c-eeeeeccc
Q 016020 341 FRG-E-LVTSFEDH 352 (396)
Q Consensus 341 ~~g-e-L~t~fedh 352 (396)
..- + ++..-+.|
T Consensus 264 ~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 264 PERQDSAIETVDHH 277 (311)
T ss_pred cccchhhhhhhhcc
Confidence 984 2 55555544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00039 Score=68.36 Aligned_cols=151 Identities=14% Similarity=0.182 Sum_probs=113.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
|.|.- .|.-...+..|.++|+|+-.-..+|.+-++ .+|.+...|.+--=+.+-+. +.-+.+||++||+.+..|.-
T Consensus 23 vryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg--Dk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 23 VRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG--DKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred EEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC--CceEEEEEcccCeeeeeccc
Confidence 44543 677777788999999999999999888777 89999998855543344433 78899999999999999994
Q ss_pred ecccCCccchhhhhcceeeEeecCCeeeEEEcccce--EEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ce
Q 016020 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-EL 345 (396)
Q Consensus 269 ~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL 345 (396)
-+++-+-|+|.| ..+-++.+..|.++|+||++++. -+.+.++-.+..+..- +.+-++.--.-+|+++.||.+- ++
T Consensus 100 H~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~-v~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 100 HLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID-VAEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred ccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE-ecccEEEeeccCCcEEEEEeeccee
Confidence 345555599999 88899999999999999999854 4446666666655543 3444444444459999999875 44
Q ss_pred e
Q 016020 346 V 346 (396)
Q Consensus 346 ~ 346 (396)
.
T Consensus 178 ~ 178 (307)
T KOG0316|consen 178 S 178 (307)
T ss_pred e
Confidence 3
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0019 Score=61.68 Aligned_cols=154 Identities=12% Similarity=0.215 Sum_probs=101.7
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEE-------Ee-ccCceEEEEEcCC-eEEEEEecCCCeeeeEEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-------SI-SDKHVQEIKISPG-IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~ly-------sI-s~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl 255 (396)
..+|-.+-|++....+++.+..++.++|||+.+...+- .+ .+.....+.|+|+ -.|.+.... .-.+.+|
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~ 202 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVW 202 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEE
Confidence 35688888998555666889999999999998744332 22 2456678899976 344444433 4667888
Q ss_pred Eeec--CcE--EEEEEeecccC-------CccchhhhhcceeeEeec-CCeeeEEEcccc----eEEEecccccCCCceE
Q 016020 256 SIED--GTV--LKVFYHLLHRN-------KKVDFIEQFNEKLLVKQE-NENLQILDVRNA----ELMEVSRTEFMTPSAF 319 (396)
Q Consensus 256 ~Iet--G~~--l~s~~~~L~~s-------k~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~----ki~~v~~t~~~~PsAF 319 (396)
++.+ |+. +.++. .++.. ..+.|.+ .+.+|++-.+ +..|.+||+.+. +++..-.+. ..|+++
T Consensus 203 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~ 279 (330)
T PRK11028 203 QLKDPHGEIECVQTLD-MMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGF 279 (330)
T ss_pred EEeCCCCCEEEEEEEe-cCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCce
Confidence 8874 432 22222 11111 1366766 8899999865 678999999543 233333333 589999
Q ss_pred EEeecCe-EEEEEE-cCeEEEEeccc
Q 016020 320 IFLYENQ-LFLTFR-NRTVAVWNFRG 343 (396)
Q Consensus 320 iFly~~q-LFLTfs-~gti~iWd~~g 343 (396)
.|.++++ ||++-+ +++|.+|+.+.
T Consensus 280 ~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 280 NIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9998875 566665 48999998864
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=73.66 Aligned_cols=177 Identities=15% Similarity=0.259 Sum_probs=124.5
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccC-------------ce-----EEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKN-------------YT-----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlkn-------------Ys-----~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
|.. .|-.+|-.+.|..+|++|.+- -. .+-.+-| ++|.++.|-|--.+|++... +..+
T Consensus 120 fs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr--D~tv 196 (430)
T KOG0640|consen 120 FSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR--DNTV 196 (430)
T ss_pred eCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC--CCeE
Confidence 444 588888888999999999871 11 3445555 89999999999999999888 7788
Q ss_pred EEEEeecCcEEEEEEe--ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc---ccCCCceEEEeecCeE
Q 016020 253 KILSIEDGTVLKVFYH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQL 327 (396)
Q Consensus 253 kIl~IetG~~l~s~~~--~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t---~~~~PsAFiFly~~qL 327 (396)
|+||+..-..-+.|+. .-+.-..+-|-+ .||+||++-+-..+++|||.|-++.--.+. |....-...++.++.|
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL 275 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE
Confidence 9999876332222221 111122245555 899999999999999999999999975443 3444555677889999
Q ss_pred EEEEEc-CeEEEEeccc-ceeeeecccc-----ccCCCCCCCcEEEccCCcEE
Q 016020 328 FLTFRN-RTVAVWNFRG-ELVTSFEDHL-----LWHPDCNTNNIYITSDQDLI 373 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g-eL~t~fedh~-----l~~~~c~~n~~~it~~qd~i 373 (396)
|+|-|. |-|++||==+ .-+++|+.-- -.+-+.-++++.+|+.-|-+
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 999998 9999999655 4666665431 11223455666666655544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00068 Score=74.11 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=119.7
Q ss_pred cccCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
....||+|| +|-|++.+=-.+.+-|+-.|+|+..+-+-++--.- +=|.-+-++|+=...+-..- .....+++.+
T Consensus 404 ~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~--~G~C~fY~t~ 481 (712)
T KOG0283|consen 404 KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF--NGYCRFYDTE 481 (712)
T ss_pred eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe--ccEEEEEEcc
Confidence 345688885 79999999999999999999999888764332221 55666666665444333333 3566777777
Q ss_pred cCcEEEEEEeecccCCc--------cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCc--eEEEeecCeEE
Q 016020 259 DGTVLKVFYHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS--AFIFLYENQLF 328 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~--------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps--AFiFly~~qLF 328 (396)
+=+...++-..++++|+ +||.+...+.+|+-..|+.|||||.+..++++..++.-..-+ ..=|..+|+..
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 77777777777776665 899999999999999999999999999999886664433322 33456699999
Q ss_pred EEEEc-CeEEEEeccc
Q 016020 329 LTFRN-RTVAVWNFRG 343 (396)
Q Consensus 329 LTfs~-gti~iWd~~g 343 (396)
++-|+ -.|-||+.++
T Consensus 562 Vs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDS 577 (712)
T ss_pred EEeecCceEEEEeCCC
Confidence 99998 6999999866
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00038 Score=77.83 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=100.8
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
=|-|.+ ||+-+|+.+.|..+.||.... - +++.+.=..+.++++ |.-+....+
T Consensus 74 CVR~S~-dG~~lAsGSDD~~v~iW~~~~-~---------------~~~~~fgs~g~~~~v-----------E~wk~~~~l 125 (942)
T KOG0973|consen 74 CVRFSP-DGSYLASGSDDRLVMIWERAE-I---------------GSGTVFGSTGGAKNV-----------ESWKVVSIL 125 (942)
T ss_pred EEEECC-CCCeEeeccCcceEEEeeecc-c---------------CCccccccccccccc-----------ceeeEEEEE
Confidence 356888 999999999999999999874 1 122221111112111 111111222
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E 344 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e 344 (396)
..|..+ +...+ .+.+|....-|+.+-|||..+.+++++.+.|--.|....|=|-|+.|-|-++ ++++||.+.- .
T Consensus 126 ~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 126 RGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred ecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence 244444 44444 6777788888999999999999999999999999999999999999999999 9999999654 2
Q ss_pred ---eee-eec--------cccccCCCCCCCcEEEc
Q 016020 345 ---LVT-SFE--------DHLLWHPDCNTNNIYIT 367 (396)
Q Consensus 345 ---L~t-~fe--------dh~l~~~~c~~n~~~it 367 (396)
.+| .|| -++.| .||+.++.|
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSW---SPDG~~las 236 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSW---SPDGHHLAS 236 (942)
T ss_pred eeEeeccchhhCCCcceeeeccc---CCCcCeecc
Confidence 222 444 44556 666666554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00019 Score=72.12 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=122.7
Q ss_pred EEEEEeEecC-CCceeeeEeee-hh-hhhhCCCCCCCcc-----eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEec
Q 016020 144 LITVSVYASD-NFSSLKCRSTK-IE-YIRRGKPDSGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (396)
Q Consensus 144 lI~vSv~~sd-~~s~L~cr~~~-~~-~i~~gk~~~~~~L-----F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdl 215 (396)
=|..++|.-. +-..|.|.++= ++ .++. . ...+| ..++.+..=.-|||.+ |+.-+++= .|..+-+|+|
T Consensus 77 ~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S-~~~tlE~v~~Ldteavg~i~cvew~P-ns~klasm-~dn~i~l~~l 151 (370)
T KOG1007|consen 77 RILATVYNDTSDSGVLTGAAIWQIPEPLGQ--S-NSSTLECVASLDTEAVGKINCVEWEP-NSDKLASM-DDNNIVLWSL 151 (370)
T ss_pred ceEEEEEeccCCCcceeeEEEEecccccCc--c-ccchhhHhhcCCHHHhCceeeEEEcC-CCCeeEEe-ccCceEEEEc
Confidence 3556677621 22456777764 22 1111 1 11122 2234444557899999 66666643 4999999999
Q ss_pred cCceEEEEeccCceEEEEEcCCe--EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCC
Q 016020 216 KNYTMLYSISDKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (396)
Q Consensus 216 knYs~lysIs~~~VqEIkiSpg~--~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~ 293 (396)
.+-+.+ ++|++.|... -.-++.++ |+= || .+..++. -.|.
T Consensus 152 ~ess~~-------vaev~ss~s~e~~~~ftsg~--------Wsp-------------HH---------dgnqv~t-t~d~ 193 (370)
T KOG1007|consen 152 DESSKI-------VAEVLSSESAEMRHSFTSGA--------WSP-------------HH---------DGNQVAT-TSDS 193 (370)
T ss_pred ccCcch-------heeecccccccccceecccc--------cCC-------------CC---------ccceEEE-eCCC
Confidence 987642 4444444211 11111111 111 11 2222222 3478
Q ss_pred eeeEEEccc-ceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEeccc--ceeeeeccccccCCC----CCCCcE
Q 016020 294 NLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRG--ELVTSFEDHLLWHPD----CNTNNI 364 (396)
Q Consensus 294 ~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~g--eL~t~fedh~l~~~~----c~~n~~ 364 (396)
+|+.||++| ++...+.++|.--.+..=|.|+.|-+|+-.. |.|+|||++. ..|+.+++|.-|+=. ..-+.+
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 999999999 6667799999888999999999999887776 8999999999 599999999999754 455777
Q ss_pred EEccCCc--EEEEeccCCC
Q 016020 365 YITSDQD--LIISYCKAEP 381 (396)
Q Consensus 365 ~it~~qd--~ii~~~~~~~ 381 (396)
.+|..-| ++.++--+-+
T Consensus 274 iLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred EEecCCCceeEEEeccccc
Confidence 7776554 5555554444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=65.17 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=90.9
Q ss_pred eEEeeCCCCcEEEeecCC---CeEEEEeccCce--EEEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQD---SIYKVFDLKNYT--MLYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d---~~YrVwdlknYs--~lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+.|.+ +|+.|+|.+.+ ..+.+||+++.+ .+-... .....++|||+ -.|++.....+.+-+-++++.+|+..
T Consensus 208 ~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 208 SPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred cceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 456777 78888876543 479999999875 343333 34557999975 45555444444555667788777654
Q ss_pred EEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEccc--ceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~--~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.-.... .....+.|.+ .+++|+... .++..+||++.. ++...+ ++.. ...-|+++++.++..+...+-.||
T Consensus 286 ~lt~~~-~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~i~~~D 359 (429)
T PRK01742 286 QLTSGA-GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMINGDNVVKQD 359 (429)
T ss_pred eeccCC-CCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCCEEEEE
Confidence 322211 1223478888 788888765 567889998753 333222 2211 223478898877666655566699
Q ss_pred ccc
Q 016020 341 FRG 343 (396)
Q Consensus 341 ~~g 343 (396)
+.+
T Consensus 360 l~~ 362 (429)
T PRK01742 360 LTS 362 (429)
T ss_pred CCC
Confidence 876
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0026 Score=67.72 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=135.6
Q ss_pred EeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---c
Q 016020 202 TYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---V 276 (396)
Q Consensus 202 t~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i 276 (396)
+..+.|.++-+|.=-.|++=.++-+ +.|++||+||+=-+++..+. +..+.|+|=-||+.++.|.---+|... +
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs--Dgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS--DGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC--CccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 3356699999999999998888876 89999999988776555555 889999999999999998844455444 6
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccceEEEecccc----cCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeec
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE----FMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~----~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fe 350 (396)
-..+ ++.++|.-.-|.+++|||+.++++..+..-. +++.- =+-.+...+|+|- |++.+.+... +..-.+.
T Consensus 242 sWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG---~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 242 SWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG---CLWQKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE---EEEeCCeEEEEEcCcEEEEecccCCChhheec
Confidence 7777 8999999999999999999999988732211 11111 1344666888887 9999999887 6555777
Q ss_pred cccccCCC---CCCCcEEEccCCcEEEEeccCCCCCc
Q 016020 351 DHLLWHPD---CNTNNIYITSDQDLIISYCKAEPEDQ 384 (396)
Q Consensus 351 dh~l~~~~---c~~n~~~it~~qd~ii~~~~~~~~~~ 384 (396)
+|.--..- .+++++++|++.|=.|.+-...+..+
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 77654322 77889999999998888766555433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0007 Score=71.40 Aligned_cols=226 Identities=13% Similarity=0.147 Sum_probs=167.5
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
..++++=+..|.-..||+++.+.++.+..++..=|=+|=.| ..+++ ++-+|..+-.-++|.++...+.
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~ls---------sGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLS---------SGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEE---------EecCCCcEEEEEEecchhhhhh
Confidence 45778888999999999999999999999988888888777 45555 4456777777777666654431
Q ss_pred -cceee--cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeee
Q 016020 178 -ALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVP 251 (396)
Q Consensus 178 -~LF~~--~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~ip 251 (396)
-.=++ +-| +++. .|+-+|+...|+...|||...-..++.+.. -.|.-+.|||-. -||+...-..+.-
T Consensus 297 ~~~H~qeVCgL------kws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 297 LQGHRQEVCGL------KWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhcccceeeee------EECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 11112 333 4555 799999999999999999988888888887 789999999754 3556666667899
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
+++|++.+|+.+.+..-- .+=.-+-++...+| |+..+ -...|.||+.-+-+.+...-+|..-+-..--+|+++-.+
T Consensus 370 i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kE-i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKE-LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEEEcCCCcEecccccC-CceeeEEEcCCCCE-EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 999999999999864400 00001223332222 23322 223799999999999999899988887778889999888
Q ss_pred EEEc-CeEEEEecccc
Q 016020 330 TFRN-RTVAVWNFRGE 344 (396)
Q Consensus 330 Tfs~-gti~iWd~~ge 344 (396)
|... .|+++|++-+.
T Consensus 448 t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 TGAADETLRFWNLFDE 463 (484)
T ss_pred EecccCcEEeccccCC
Confidence 8877 89999999885
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00071 Score=70.17 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=141.9
Q ss_pred hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 016020 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 179 (396)
.++|-++.|-|+.|+-.+.+..-.|-.-.|+|---=|+-..+. +|.-| - =|++..-+|..+.- ...+|
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs----~------DRtiK~WDl~k~~C-~kt~l 300 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGS----A------DRTIKLWDLQKAYC-SKTVL 300 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc-eeecc----c------cchhhhhhhhhhhe-ecccc
Confidence 4455556666666666666666666664444433334333222 33322 1 14455555554221 11233
Q ss_pred eeecccCCCCeEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEc-CCeEEEEEecCCCeeeeEEEE
Q 016020 180 FESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~ 256 (396)
+ +--.+|=+ ++..++++--|+.+|+||.+.-...+++.. -.|..+-+| +|..||.+.+. =.++++|
T Consensus 301 ~--------~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD---dtl~viD 369 (459)
T KOG0288|consen 301 P--------GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD---DTLKVID 369 (459)
T ss_pred c--------cccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC---Cceeeee
Confidence 3 22233322 255566666699999999999999999998 788899988 56667666544 4577888
Q ss_pred eecCcEEEEEE---eeccc-CCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC--CceEEEeecCeEEEE
Q 016020 257 IEDGTVLKVFY---HLLHR-NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT--PSAFIFLYENQLFLT 330 (396)
Q Consensus 257 IetG~~l~s~~---~~L~~-sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~--PsAFiFly~~qLFLT 330 (396)
+-+.+.-..+. +...+ -..++|.+ .++|++-+.-|+++.||++.++||-+++.+..-. .-+.-|.|-+.-.|+
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred cccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 88888877665 22222 23499999 9999999999999999999999999987766555 445556677777777
Q ss_pred EEc-CeEEEE
Q 016020 331 FRN-RTVAVW 339 (396)
Q Consensus 331 fs~-gti~iW 339 (396)
.+. +.+.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 766 677777
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.002 Score=65.05 Aligned_cols=132 Identities=12% Similarity=0.105 Sum_probs=89.4
Q ss_pred CCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEec-CCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhc
Q 016020 207 DSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNR-SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ 283 (396)
++.+.+||+.++... .+.. ..+...+|||+--.+++.. .+..--+.+|++.+|+...-..+ -.+...+.|.+ .|
T Consensus 183 ~~~i~i~d~dg~~~~-~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~~~~~~wSP-DG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQF-IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGHNGAPAFSP-DG 259 (429)
T ss_pred eEEEEEECCCCCCce-EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCccCceeECC-CC
Confidence 478899999877643 3433 5689999997765444433 22334589999999975432221 14455688988 89
Q ss_pred ceeeEee-cCCeeeEE--EcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecc
Q 016020 284 EKLLVKQ-ENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFR 342 (396)
Q Consensus 284 ekLLIKQ-ed~~L~I~--Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ 342 (396)
++|++-. .++..+|| |+.++++..+.. +.....+..|.++++.++..++ |...||+.+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 9998864 56655655 777888776643 3445677889999986554444 789999875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00071 Score=67.11 Aligned_cols=175 Identities=16% Similarity=0.226 Sum_probs=130.5
Q ss_pred cceeeeeccCCCCCccccccccccccceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCC
Q 016020 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN 141 (396)
Q Consensus 64 ~l~~~~D~~d~~~~~~~~~~~l~~RS~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n 141 (396)
+|-.+||.-.|++...-+ =.....|+..+... -.|+--+.-|..+.||+.||. .++||++|..=
T Consensus 122 kllrvfdln~p~App~E~---~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----------~v~sL~~~s~V 187 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEI---SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----------EVQSLEFNSPV 187 (334)
T ss_pred HHhhhhhccCCCCCchhh---cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----------EEEEEecCCCC
Confidence 345678888888766332 12345566666652 233333677888888888874 57788888533
Q ss_pred CeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE
Q 016020 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 221 (396)
Q Consensus 142 ~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l 221 (396)
.| .|... .|+|||- +..+.+++||.+++..|
T Consensus 188 tS-----------------------------------------------lEvs~-dG~ilTi-a~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 188 TS-----------------------------------------------LEVSQ-DGRILTI-AYGSSVKFWDAKSFGLL 218 (334)
T ss_pred cc-----------------------------------------------eeecc-CCCEEEE-ecCceeEEeccccccce
Confidence 32 23333 5788873 56788999999999999
Q ss_pred EEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeE
Q 016020 222 YSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQI 297 (396)
Q Consensus 222 ysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I 297 (396)
++..- -+|..--++|..-.++.... ++.+.-||-.||+++.+++ . .|-.+ +.|.+ .||.-.+++||+.|+|
T Consensus 219 Ks~k~P~nV~SASL~P~k~~fVaGge--d~~~~kfDy~TgeEi~~~n-k-gh~gpVhcVrFSP-dGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 219 KSYKMPCNVESASLHPKKEFFVAGGE--DFKVYKFDYNTGEEIGSYN-K-GHFGPVHCVRFSP-DGELYASGSEDGTIRL 293 (334)
T ss_pred eeccCccccccccccCCCceEEecCc--ceEEEEEeccCCceeeecc-c-CCCCceEEEEECC-CCceeeccCCCceEEE
Confidence 98877 78888889999987777766 8999999999999999973 1 33344 89999 9999999999999999
Q ss_pred EEcccceEE
Q 016020 298 LDVRNAELM 306 (396)
Q Consensus 298 ~Dv~~~ki~ 306 (396)
|-+.-++..
T Consensus 294 WQt~~~~~~ 302 (334)
T KOG0278|consen 294 WQTTPGKTY 302 (334)
T ss_pred EEecCCCch
Confidence 998877766
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0025 Score=66.66 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=164.6
Q ss_pred ccccc--ceEEEeeccchhhhhhccccceeeeccccceEEEecCCCC-ceEEEEeeecCCC-eEEEEEeEecCCCceeee
Q 016020 85 LMKRT--KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPD-EVIRSLFYNKNND-SLITVSVYASDNFSSLKC 160 (396)
Q Consensus 85 l~~RS--~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~-evIrsifyN~~n~-slI~vSv~~sd~~s~L~c 160 (396)
-||+. ++-|=++--|-+..|.+.-=....+..+=.-+|-|-+.+. ..|++. -+| .++.
T Consensus 184 ~rKkrg~k~p~~la~~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTG----G~d~~av~-------------- 245 (506)
T KOG0289|consen 184 ERKKRGKKLPEKLATTDELSCLLQVASHTGLHSTSTPGITALDIIPSSSKILTG----GEDKTAVL-------------- 245 (506)
T ss_pred HhhhccccCCcccccHHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCcceec----CCCCceEE--------------
Confidence 35555 7788888888888887654433223233344554433332 444432 112 2221
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec-c-CceEEEEEcCCe
Q 016020 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKISPGI 238 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs-~-~~VqEIkiSpg~ 238 (396)
--.+.+.+.. +|+.-.++ =--|.|-+.+..+++. +.|.++|||..-+-+.--++- . +-|..+..-|.-
T Consensus 246 ~d~~s~q~l~--------~~~Gh~kk-i~~v~~~~~~~~v~~a-Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 246 FDKPSNQILA--------TLKGHTKK-ITSVKFHKDLDTVITA-SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred Eecchhhhhh--------hccCcceE-EEEEEeccchhheeec-CCcceEEeeccccccCccccccccccceeeeeccCC
Confidence 1222333322 33332111 1135566655555554 569999999999988333322 2 666766666555
Q ss_pred EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-----cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 239 ~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
=-++.... ....---|+++|..+-..-. -+++ .+|-+ +|--+-.+..|+-|+|||+.++.-.--=++|.
T Consensus 316 eYllsAs~--d~~w~Fsd~~~g~~lt~vs~---~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght 389 (506)
T KOG0289|consen 316 EYLLSASN--DGTWAFSDISSGSQLTVVSD---ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT 389 (506)
T ss_pred cEEEEecC--CceEEEEEccCCcEEEEEee---ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCC
Confidence 54455444 56666778888887764431 1222 44444 66666777899999999999977443345688
Q ss_pred CCCceEEEeecCeEEEEEEc-CeEEEEeccc--ceee-eecccccc--CCCCCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 314 MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--ELVT-SFEDHLLW--HPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--eL~t-~fedh~l~--~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
-+.++.-|.-+|-..+|-.+ +.|++||++- ...| .+++...- ...=.++++-+.+.+||=|=-||.. ..+|.|
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~-~k~W~~ 468 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK-TKSWTE 468 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc-ccccee
Confidence 89999999888887888888 6699999998 3555 45554221 2224567888888999999999854 446655
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00023 Score=77.89 Aligned_cols=182 Identities=17% Similarity=0.227 Sum_probs=130.1
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKV 265 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s 265 (396)
-=++|-.+.--||.+.+||+++|.|||+-=+ ..|.=-.|-|-||+|||+--- .+...+.-..|.+|||-- -+..+.
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k 215 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKK 215 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHH
Confidence 4588888889999999999999999998665 333334499999999998743 334444556677777642 333333
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
|. +|+.+ ++.-+ -+++|..+-.|+-++|||+-+++.-. +-.|. .+.-..-|=|+++.-|..++ -.|
T Consensus 216 ~~---AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 216 LT---AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred hh---cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeec-ceeeeeeeccCccchhhhhhccccceE
Confidence 33 66666 67777 89999999999999999999754433 22222 34455667788887777766 589
Q ss_pred EEEecccc--eeeeeccccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 337 AVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 337 ~iWd~~ge--L~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.|||++-- ...+|+-|-. -.++..+=+.|-+++.|.=|..
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~----~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTD----SVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred EEEeeccccccceeeeccCc----cccceeccCCCceeeEeecCcc
Confidence 99999884 5567777654 4566667678888888766643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=65.51 Aligned_cols=182 Identities=15% Similarity=0.250 Sum_probs=137.9
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.-|-+.- +|.=|+..+.|+..+||++..-.++++.-. ..|-++-+.|-. -++.... ....+.+||+-.||+.
T Consensus 24 ~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas--~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 24 HSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS--GDKTIRIWDIRSGKCT 100 (313)
T ss_pred eEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec--CCceEEEEEeccCcEE
Confidence 3455554 799999999999999999999988877765 466677776433 2222322 3678999999999999
Q ss_pred EEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
...... .-+-.+...+ .++|+.+...|.-|.++|.++.++.+.- ..+.-.-...+...+.+|+--.- |+|+|-..-
T Consensus 101 ~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 101 ARIETK-GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred EEeecc-CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 987722 2333366677 9999999999999999999999988642 22233345566677777555444 999999998
Q ss_pred c-ceeeeeccccccCCCC------CCCcEEEccCCcEEEEeccC
Q 016020 343 G-ELVTSFEDHLLWHPDC------NTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 343 g-eL~t~fedh~l~~~~c------~~n~~~it~~qd~ii~~~~~ 379 (396)
. +.|+++.-|- .|| |+|++|-+..-|-++|--..
T Consensus 178 sLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 178 SLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred ccccccccccCC---cceEEEEECCCCceEeeccccceeeccCh
Confidence 8 8999999997 565 89999999999999986443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.56 E-value=6e-05 Score=81.95 Aligned_cols=139 Identities=17% Similarity=0.307 Sum_probs=110.7
Q ss_pred CCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE-eecccCCccchhhhhcc
Q 016020 206 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 206 ~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-~~L~~sk~i~FiE~~~e 284 (396)
.+++-++|+..- |.-..--|..+++...=.|+....+ ...+|+||||.++.+..+. |++.. -.++|-+ +++
T Consensus 54 L~~i~kp~~i~S----~~~hespIeSl~f~~~E~Llaagsa--sgtiK~wDleeAk~vrtLtgh~~~~-~sv~f~P-~~~ 125 (825)
T KOG0267|consen 54 LWAIGKPNAITS----LTGHESPIESLTFDTSERLLAAGSA--SGTIKVWDLEEAKIVRTLTGHLLNI-TSVDFHP-YGE 125 (825)
T ss_pred cccccCCchhhe----eeccCCcceeeecCcchhhhccccc--CCceeeeehhhhhhhhhhhccccCc-ceeeecc-ceE
Confidence 355556666553 4555678899999999988888888 6789999999999998754 33322 3489888 999
Q ss_pred eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec-ccceeeeeccc
Q 016020 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF-RGELVTSFEDH 352 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~-~geL~t~fedh 352 (396)
|-....-|-++.|||++..-|.+.-+.|.--....-|.|++.+-..=-+ .+++|||. +|++...|+.|
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc
Confidence 9999999999999999998888887777777788889999987766655 89999998 55787777733
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0017 Score=63.97 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=108.9
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc---------CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~---------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
||...++.+||.++|+|||+--+++-.+.. -.|..|.+-|.--||+...+ +-.-+++||.-|..+.+|-
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~--dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA--DSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--CCceEEEEeeCCceeeeeC
Confidence 566667889999999999999999888764 46889999999888888877 5677899999999999988
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEccc---ceEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN---AELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~---~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+|+.+ |.|.+ ---|||...-|..|++-|+.- .++-. |-.+|.+..---..-+..=-|++-|- +|+.+|
T Consensus 271 ---phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 271 ---PHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred ---CCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 88888 78988 788999999999999999853 33322 44555554333333333333666555 899999
Q ss_pred eccc
Q 016020 340 NFRG 343 (396)
Q Consensus 340 d~~g 343 (396)
-+.|
T Consensus 347 a~~~ 350 (350)
T KOG0641|consen 347 ALNG 350 (350)
T ss_pred ccCC
Confidence 8765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00096 Score=69.17 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=129.1
Q ss_pred cCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEe-----------------
Q 016020 185 LKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFN----------------- 244 (396)
Q Consensus 185 l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q----------------- 244 (396)
+.|||=| .+=+-|-.|+|.-...+.+-|||+..+.-....+++ .-|++.|.-.+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~------~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGE------CRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccccc------CCCceEEEeecccccccccccccceeEe
Confidence 5556543 345678899999999999999999999877765531 11222222222
Q ss_pred cCCCeeeeEEEEeecCcE----EEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc--cceEEEecccccCC
Q 016020 245 RSSSHVPLKILSIEDGTV----LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR--NAELMEVSRTEFMT 315 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~----l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~--~~ki~~v~~t~~~~ 315 (396)
.+++.-.+-+|||..... +......=.|+.- +.|......-.-.--+|+-|.|||+| +.+..++-.+|...
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 234567889999987544 2222222133332 88888555555556799999999999 78888888899999
Q ss_pred CceEEEeecCeE-EEEEE-cCeEEEEeccc--ceeeeeccccccCCC----CCCCcEEEccCCc--EEEEeccCCCCCc
Q 016020 316 PSAFIFLYENQL-FLTFR-NRTVAVWNFRG--ELVTSFEDHLLWHPD----CNTNNIYITSDQD--LIISYCKAEPEDQ 384 (396)
Q Consensus 316 PsAFiFly~~qL-FLTfs-~gti~iWd~~g--eL~t~fedh~l~~~~----c~~n~~~it~~qd--~ii~~~~~~~~~~ 384 (396)
.-+.-|.|.++. +.|-| |++|.+||+|- +-.-+||+|---+.. ....++.-|+-.| |.|==+..-++.|
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999999986665 55666 49999999998 456688888543222 3455666655444 4444444444444
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00036 Score=72.81 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=120.9
Q ss_pred CCcEEEeecCCC-eEEEEeccCceEEEEeccC---ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-EEeecc
Q 016020 197 NGKVLTYSAQDS-IYKVFDLKNYTMLYSISDK---HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLH 271 (396)
Q Consensus 197 NgkIlt~~a~d~-~YrVwdlknYs~lysIs~~---~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s-~~~~L~ 271 (396)
-+-+++.++.|- ...+||++++.-+-+..+- --+....=.+-.||..|.... -+.+|.|+.-..... +. ++
T Consensus 6 e~~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp--~l~vw~i~k~~~~~q~~v--~P 81 (476)
T KOG0646|consen 6 EGTVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRP--LLHVWEILKKDQVVQYIV--LP 81 (476)
T ss_pred eEEEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCc--cccccccCchhhhhhhcc--cc
Confidence 344556666554 4999999999977666542 111122223345566666655 566777766555441 11 11
Q ss_pred -cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc------
Q 016020 272 -RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG------ 343 (396)
Q Consensus 272 -~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g------ 343 (396)
...-+.=. ..|.+|+-+-+-++|-||-|.+|+++.+..+|.-...+..|..|+..|+|-++ |.|.+|++--
T Consensus 82 g~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 82 GPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred cceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 11111111 15666776669999999999999999999999999999999999999999998 9999998632
Q ss_pred ----ceeeeeccccccCCC-----CCCCcEEEccCCcEEEEecc
Q 016020 344 ----ELVTSFEDHLLWHPD-----CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 344 ----eL~t~fedh~l~~~~-----c~~n~~~it~~qd~ii~~~~ 378 (396)
...-.|.||-+..-+ -..|...+|+.+|=.|.-..
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 234478888887666 33667778888887776543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.012 Score=67.17 Aligned_cols=199 Identities=12% Similarity=0.212 Sum_probs=129.2
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-------------------CceEEEEEcC-CeE
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------------------KHVQEIKISP-GIM 239 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-------------------~~VqEIkiSp-g~~ 239 (396)
|....+.+|--+-||+.++.+...+.....++++|+.+.. +-.+-+ ..-++|.++| +-.
T Consensus 618 ~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~ 696 (1057)
T PLN02919 618 FEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK 696 (1057)
T ss_pred hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence 4567889999999998777788888888899999998754 323311 1235788887 444
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEE--------E------eecccCCccchhhhhcceeeEe-ecCCeeeEEEcccce
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVF--------Y------HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAE 304 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~--------~------~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~k 304 (396)
+.+.....+. +.+|+..+|....-. . ..+..-..|.|.+ .+++|+|- .+++.|++||+.+++
T Consensus 697 LyVad~~~~~--I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 697 VYIAMAGQHQ--IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEEECCCCe--EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCc
Confidence 4454433222 567777777543200 0 0011112256655 56667655 467999999999876
Q ss_pred EEEec---------------------ccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeeccc----------
Q 016020 305 LMEVS---------------------RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDH---------- 352 (396)
Q Consensus 305 i~~v~---------------------~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fedh---------- 352 (396)
...+. ...+..|....|.+++++|++=+. +.|.+||.++..++.+-..
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 43221 124567999999999999999877 7999999987433322111
Q ss_pred ---cccCCC----CCCCcEEEccCCcEEEEeccCCCC
Q 016020 353 ---LLWHPD----CNTNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 353 ---~l~~~~----c~~n~~~it~~qd~ii~~~~~~~~ 382 (396)
.+..|. .+++++||+...+=-|.....+..
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 122333 356788888877777777766543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=66.19 Aligned_cols=208 Identities=13% Similarity=0.234 Sum_probs=142.1
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee-------hhhhhhCCCCCCCcceee--cccCCCCeEEeeCCC
Q 016020 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK-------IEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVN 197 (396)
Q Consensus 127 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~-------~~~i~~gk~~~~~~LF~~--~~l~~PgfVEFDd~N 197 (396)
++....|.-=||.. .+|+ +..|-+ .+.|.--+. -+++..|...++-|+--+ +-.---..++|-+ .
T Consensus 110 ~HK~~cR~aafs~D-G~lv---ATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPD-GSLV---ATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred ecccceeeeeeCCC-CcEE---EccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 44556666666642 3333 334444 233332221 235666666666665554 1111124678877 7
Q ss_pred CcEEEeecCCCeEEEEeccCce---EEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYT---MLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs---~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
.-||++.+.|+++|+||.---+ -.+.+.+ +.|..|-+-|+=-+|+-.-. |-.++++||+|-++-.+.+-.-.|+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd--Hp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD--HPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC--CCceeEEeccceeEeeecCcccccc
Confidence 8999999999999999986554 3445555 88999999887665555555 4568999999999999887222233
Q ss_pred Cc---cchhhhhcceeeEeecCCeeeEEEcccceEEE-eccccc-CCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 274 KK---VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEF-MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 274 k~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~-~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
.- |.+.+ .+.--+....|+-|+|||=.+++|++ +.++|. ...-..+|.-++...|+.-. -++++|....
T Consensus 262 ~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 262 GAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 22 77887 67777778899999999999999998 444443 34566789888888887655 6999999876
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=71.19 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=134.4
Q ss_pred cceeecccCCCCeEEeeCCCCc------EEEeecCCCeEEEEeccCceE-EEEeccC-------ceEEEEEcCCeEEEEE
Q 016020 178 ALFESESLKWPGFVEFDDVNGK------VLTYSAQDSIYKVFDLKNYTM-LYSISDK-------HVQEIKISPGIMLLIF 243 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~Ngk------Ilt~~a~d~~YrVwdlknYs~-lysIs~~-------~VqEIkiSpg~~Ll~~ 243 (396)
-+|.++.++-|--+||+-.|.| |+|.+..+...+.|++++-.. .|.+... ++..+.+|+==.+.+-
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEE
Confidence 3788899999999999987766 789999999999999999886 6666554 7777777753222222
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCc---------------------cchhhhhcceeeEee------------
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---------------------VDFIEQFNEKLLVKQ------------ 290 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---------------------i~FiE~~~ekLLIKQ------------ 290 (396)
... ...+.+|++|.|..-++|--.-.|.++ +-|-- |+++.|+++
T Consensus 466 G~S--~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~-f~~k~l~~~l~l~~~~~~iv~ 542 (910)
T KOG1539|consen 466 GYS--KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD-FKKKVLKKSLRLGSSITGIVY 542 (910)
T ss_pred ecc--CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe-cCCcceeeeeccCCCcceeee
Confidence 222 245677888887777766211111122 22222 455554444
Q ss_pred -----------cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceee--eecccccc
Q 016020 291 -----------ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVT--SFEDHLLW 355 (396)
Q Consensus 291 -----------ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t--~fedh~l~ 355 (396)
++..|.++|+.|+++.+-..+|.+..-+|-|++|+.-.++.+. ++|++||+-. .|+- .+++-...
T Consensus 543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~s 622 (910)
T KOG1539|consen 543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTS 622 (910)
T ss_pred eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCccee
Confidence 8999999999999999999999999999999999999999998 9999999876 4554 33333333
Q ss_pred CCCCCCCcEEEccCCc
Q 016020 356 HPDCNTNNIYITSDQD 371 (396)
Q Consensus 356 ~~~c~~n~~~it~~qd 371 (396)
....|++.+--|.--|
T Consensus 623 ls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVD 638 (910)
T ss_pred eEECCCCCEEEEEEec
Confidence 3335555555444433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=71.09 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=83.0
Q ss_pred EEEeecCCCeEEEEeccCceEEEEeccC--ceEEEEEcCCeEEEEEecCCCe----------------------------
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSH---------------------------- 249 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~~--~VqEIkiSpg~~Ll~~q~~~~~---------------------------- 249 (396)
-+++.+-||.+|+|||..=.++..+.+. -|..|.++.+.++-+-+.. .+
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDK-tvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDK-TVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCc-ceeeeeccCCcceeeecccccccccccccc
Confidence 3567788999999999999999999984 4999999987776444432 00
Q ss_pred -------eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE------ecccccCCC
Q 016020 250 -------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME------VSRTEFMTP 316 (396)
Q Consensus 250 -------iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~------v~~t~~~~P 316 (396)
--+.|||.+--.++.++..--..-.-+-|.+.--+-|.....|.+|-+||++.++.++ =.++....|
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP 239 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence 0133444444444444442211112267888777777788899999999999977655 234556667
Q ss_pred ceEEEe
Q 016020 317 SAFIFL 322 (396)
Q Consensus 317 sAFiFl 322 (396)
.||.|+
T Consensus 240 eafnF~ 245 (433)
T KOG0268|consen 240 EAFNFV 245 (433)
T ss_pred ccccee
Confidence 888873
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0017 Score=64.39 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=111.8
Q ss_pred CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 227 KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 227 ~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
+.+-++++|+. .++++.++ +..|+||| ++...+.+..+..|..+ ++..+.-++..|..+=|+.|++||..
T Consensus 61 D~LfdV~Wse~~e~~~~~a~G---DGSLrl~d--~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASG---DGSLRLFD--LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cceeEeeecCCCcceEEEEec---CceEEEec--cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence 55666777754 34444444 48899999 77666665544466666 89999999999999999999999999
Q ss_pred cceEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEecccceee-eeccccccCCCC----CCCcEEEccCCcEEE
Q 016020 302 NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRGELVT-SFEDHLLWHPDC----NTNNIYITSDQDLII 374 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~geL~t-~fedh~l~~~~c----~~n~~~it~~qd~ii 374 (396)
..+-+.+-++|..-.....|.| ..+||.+.|. ++.++||++..=++ ++|-|.+=..-| ++.++-.|++-|=.|
T Consensus 136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 9999999999999999999998 6778999887 89999999984222 599998655555 456677788777665
Q ss_pred E
Q 016020 375 S 375 (396)
Q Consensus 375 ~ 375 (396)
-
T Consensus 216 r 216 (311)
T KOG0277|consen 216 R 216 (311)
T ss_pred E
Confidence 4
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.029 Score=50.07 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=119.5
Q ss_pred CCCeE--EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 187 WPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 187 ~PgfV--EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
..+.+ -..+ +|.+++. ..++....||.++++.+.+.+- .-.....+.++.+++.. .. + .+..+|.+||+.
T Consensus 25 ~~~~~~~~~~~-~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~-~~-~--~l~~~d~~tG~~ 98 (238)
T PF13360_consen 25 IGGPVATAVPD-GGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT-SD-G--SLYALDAKTGKV 98 (238)
T ss_dssp CSSEEETEEEE-TTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE-TT-S--EEEEEETTTSCE
T ss_pred CCCccceEEEe-CCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc-ce-e--eeEecccCCcce
Confidence 45555 4422 4777775 4889999999999998877774 22222356666665555 22 2 788899999999
Q ss_pred EEEEEeecccC-C---ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCC-----------ceEEEeecCeE
Q 016020 263 LKVFYHLLHRN-K---KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP-----------SAFIFLYENQL 327 (396)
Q Consensus 263 l~s~~~~L~~s-k---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P-----------sAFiFly~~qL 327 (396)
+-......... . .... ...++.+++.-.++.|..+|+.+|+++---+. .+++ .+-..+.++.+
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSP-AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRV 176 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEE-EEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTTEE
T ss_pred eeeeccccccccccccccCc-eEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECCEE
Confidence 99853211000 0 0111 11378899999999999999999999654333 2222 24444556677
Q ss_pred EEEEEcC-eEEEEeccc-ceeeeeccccccC-CCCCCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 328 FLTFRNR-TVAVWNFRG-ELVTSFEDHLLWH-PDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 328 FLTfs~g-ti~iWd~~g-eL~t~fedh~l~~-~~c~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
|++-.+| .+.+ |+.. +.+-+..-+-... +.-.++.+|++..+.-++++=.+.+.-.|
T Consensus 177 ~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 177 YVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 8877777 5777 8887 4333222222333 56778889988866766666555555444
|
... |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0033 Score=63.58 Aligned_cols=157 Identities=14% Similarity=0.176 Sum_probs=116.7
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce------------EEEEeccCceEEEEEcC--------CeEEEEEecCCCe
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------------MLYSISDKHVQEIKISP--------GIMLLIFNRSSSH 249 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs------------~lysIs~~~VqEIkiSp--------g~~Ll~~q~~~~~ 249 (396)
-...|.+-|+-+.+.+.|+.+-||||+|-+ ++.--.+++++...|+. |++ +..+ =+
T Consensus 48 sL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF--tssS--FD 123 (397)
T KOG4283|consen 48 SLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF--TSSS--FD 123 (397)
T ss_pred eeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee--eccc--cc
Confidence 357899999999999999999999999755 23233346666666663 332 2222 25
Q ss_pred eeeEEEEeecCcEEEEEEe----ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC
Q 016020 250 VPLKILSIEDGTVLKVFYH----LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~----~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
-.||+||..|-++.+.|+. --|+-.+|. --+=.|..+-.|..+|.-|+.+|...+++-+|-.-.-|.=..|-+
T Consensus 124 htlKVWDtnTlQ~a~~F~me~~VYshamSp~a---~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMA---MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ceEEEeecccceeeEEeecCceeehhhcChhh---hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 7899999999999999882 112222232 124456667799999999999999999999999999999999988
Q ss_pred eEEEEEEc--CeEEEEecccc--eeeeecccc
Q 016020 326 QLFLTFRN--RTVAVWNFRGE--LVTSFEDHL 353 (396)
Q Consensus 326 qLFLTfs~--gti~iWd~~ge--L~t~fedh~ 353 (396)
+..|.--+ |.|++||.+-. -...++.|.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 88665543 99999999863 444567776
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0009 Score=69.36 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=115.9
Q ss_pred ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE---------EEEeccCceEEEEEcCCeEEEEEecCCCeeee
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---------LYSISDKHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---------lysIs~~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
...|.|+-+.++ . |+..++|+.+.+||+..|.. .|+=-...|-++++.+-+-- ++......-.|
T Consensus 180 g~glsWn~~~~g-----~-Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L 252 (422)
T KOG0264|consen 180 GYGLSWNRQQEG-----T-LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKL 252 (422)
T ss_pred ccccccccccce-----e-EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeE
Confidence 455777766543 3 45568899999999999986 33333478889999876543 34455567899
Q ss_pred EEEEeec--CcEEEEEEeecccCCc---cchhhhhcceee-EeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecC
Q 016020 253 KILSIED--GTVLKVFYHLLHRNKK---VDFIEQFNEKLL-VKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 253 kIl~Iet--G~~l~s~~~~L~~sk~---i~FiE~~~ekLL-IKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
.|||+-+ -+..+... +|+.+ +.|.+ +++.|| ...-|+.+.+||+|+ .+...+...|....-..-|+|.+
T Consensus 253 ~iwD~R~~~~~~~~~~~---ah~~~vn~~~fnp-~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 253 MIWDTRSNTSKPSHSVK---AHSAEVNCVAFNP-FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred EEEEcCCCCCCCccccc---ccCCceeEEEeCC-CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999995 44444444 77777 88988 666665 555699999999999 77788888998888888899999
Q ss_pred eEEEEEEc--CeEEEEeccc
Q 016020 326 QLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 326 qLFLTfs~--gti~iWd~~g 343 (396)
+=.|..|. |.+-|||+.-
T Consensus 329 etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CceeEecccCCcEEEEeccc
Confidence 98888776 9999999875
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=72.38 Aligned_cols=145 Identities=17% Similarity=0.317 Sum_probs=115.1
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+|+++. ...|.++-||.+-+-..+|.+.+ -+|-.+-+-..-. |++.+- +-.++||-+ |+..+++. +|+.
T Consensus 71 ~~~l~~-g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW--D~TakvW~~--~~l~~~l~---gH~a 141 (745)
T KOG0301|consen 71 KGRLVV-GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW--DSTAKVWRI--GELVYSLQ---GHTA 141 (745)
T ss_pred CcceEe-ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc--ccceEEecc--hhhhcccC---Ccch
Confidence 566665 57899999999999999999988 7888887654433 567666 678899976 44555544 7777
Q ss_pred c---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeec
Q 016020 275 K---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFE 350 (396)
Q Consensus 275 ~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fe 350 (396)
. +-+++-. +++.+.-|.+|++|.= +++.++..+|.+-+++..+++++. ||+.+| |.|+.||..|+.+-...
T Consensus 142 sVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ 216 (745)
T KOG0301|consen 142 SVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMH 216 (745)
T ss_pred heeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeee
Confidence 7 3333312 8889999999999986 889999999999999999999876 788888 99999999999877777
Q ss_pred ccccc
Q 016020 351 DHLLW 355 (396)
Q Consensus 351 dh~l~ 355 (396)
+|-.+
T Consensus 217 ghtn~ 221 (745)
T KOG0301|consen 217 GHTNF 221 (745)
T ss_pred ccceE
Confidence 77544
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0038 Score=65.18 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=101.9
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeec----------
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIED---------- 259 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Iet---------- 259 (396)
+.-..--|||+.+.|+++++|||.+.++--+|.+ +.||.++|-|- -..|+...- +..++|.|..+
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~--D~~V~l~D~R~~~~s~~~wk~ 328 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSY--DGTVALKDCRDPSNSGKEWKF 328 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccc--cceEEeeeccCccccCceEEe
Confidence 3444556999999999999999999999999985 99999999853 233344444 45666667663
Q ss_pred -CcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecC-eEEEEEEc-Ce
Q 016020 260 -GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RT 335 (396)
Q Consensus 260 -G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gt 335 (396)
|++.+-+- .+ -.....++.-+|+.|+=+|+|+. +.+-+..+|....+..-+.... .+..|.+. ++
T Consensus 329 ~g~VEkv~w---~~--------~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 329 DGEVEKVAW---DP--------HSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccceEEEEe---cC--------CCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 33322221 11 11234566679999999999994 9999999999999999887644 45555555 89
Q ss_pred EEEEecccc
Q 016020 336 VAVWNFRGE 344 (396)
Q Consensus 336 i~iWd~~ge 344 (396)
+++|+|.+.
T Consensus 398 Vklw~~~~~ 406 (463)
T KOG0270|consen 398 VKLWKFDVD 406 (463)
T ss_pred EEEEeecCC
Confidence 999999994
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0028 Score=58.10 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=89.1
Q ss_pred eEEeeCCCCcE-EEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEec-CCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR-SSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkI-lt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~IetG~~l~s~~ 267 (396)
=|.+.+.+.+. +.+...++.+++||++ .+.++++....+..|++||.-.+++... .+...-|.+||+++.+.+..+.
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence 46677744443 3445567799999997 8899999988899999997654445444 3334679999999999999888
Q ss_pred eecccCCccchhhhhcceeeEee------cCCeeeEEEcccceEEEecccc
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQ------ENENLQILDVRNAELMEVSRTE 312 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQ------ed~~L~I~Dv~~~ki~~v~~t~ 312 (396)
+. ....++|.+ .|.+++.-- .|.-++||+..-+.+.+.+-.+
T Consensus 143 ~~--~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~ 190 (194)
T PF08662_consen 143 HS--DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDE 190 (194)
T ss_pred cC--cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecCeEeEecchhh
Confidence 53 345699999 999999865 5788999998666555554443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.02 Score=58.23 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=95.0
Q ss_pred eEEeeCCCCcEEEeec---CCCeEEEEeccCce--EEEEeccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSA---QDSIYKVFDLKNYT--MLYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a---~d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
...|++ +|+.|+|-+ .+..+.+||+.+.+ .+-... ..+...+|||+- .|++........-+.++++++|+..
T Consensus 203 ~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 203 SPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred eeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 456777 788888743 35678899998875 333333 446679999664 4444434444456888999998764
Q ss_pred EEEEeecccCCccchhhhhcceeeEeec-CCeeeEE--EcccceEEEecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~L~I~--Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
.-+... .....+.|.+ .|++|+.-.+ ++..+|| |+.+++...+.. .........|+++++.++..+. ..|
T Consensus 281 ~lt~~~-~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I 357 (429)
T PRK03629 281 QVTDGR-SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHI 357 (429)
T ss_pred EccCCC-CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCCceE
Confidence 433211 1123477887 8888877664 4455666 777777766532 2223456778999887655443 257
Q ss_pred EEEecccc
Q 016020 337 AVWNFRGE 344 (396)
Q Consensus 337 ~iWd~~ge 344 (396)
.+||+++.
T Consensus 358 ~~~dl~~g 365 (429)
T PRK03629 358 AKQDLATG 365 (429)
T ss_pred EEEECCCC
Confidence 88998873
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.12 Score=50.39 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=140.5
Q ss_pred eeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC-
Q 016020 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP- 173 (396)
Q Consensus 95 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~- 173 (396)
+...+.|++-...|.-.|+|..||+.+=..... +++.-+.... ++.+++.+ .+ ..|.|--. +.|+.
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~--~~~v~v~~---~~--g~l~a~d~-----~tG~~~ 168 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVA--NGLVVVRT---ND--GRLTALDA-----ATGERL 168 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEE--CCEEEEEC---CC--CeEEEEEc-----CCCcee
Confidence 345777888888999999999999876544432 3333222221 24444422 11 23443322 22222
Q ss_pred ---CCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC------c-------eEEEEEcCC
Q 016020 174 ---DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------H-------VQEIKISPG 237 (396)
Q Consensus 174 ---~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~------~-------VqEIkiSpg 237 (396)
....+-+.-.....|... + |.++ ....++.+..+|+++.+.+++.+-. + .....+.++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~---~--~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA---D--GGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred eEEccCCCceeecCCCCCEEE---C--CEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 000111110111234332 1 3333 3344567777788888777654310 0 011223455
Q ss_pred eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec-cc-ccCC
Q 016020 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RT-EFMT 315 (396)
Q Consensus 238 ~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t-~~~~ 315 (396)
.+++... .-.+..+|.+||+.+-.... .... ... ..+++|++...++.|.++|..+++++--. .. ....
T Consensus 243 ~vy~~~~----~g~l~a~d~~tG~~~W~~~~--~~~~--~p~-~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 243 QVYAVSY----QGRVAALDLRSGRVLWKRDA--SSYQ--GPA-VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL 313 (377)
T ss_pred EEEEEEc----CCEEEEEECCCCcEEEeecc--CCcc--Cce-EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc
Confidence 4443322 24688899999998887662 1111 111 36889999999999999999999876321 11 1111
Q ss_pred CceEEEeecCeEEEEEEcCeEEEEecc-cceeeeecccc---ccCCCCCCCcEEEccCCcEEEE
Q 016020 316 PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL---LWHPDCNTNNIYITSDQDLIIS 375 (396)
Q Consensus 316 PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fedh~---l~~~~c~~n~~~it~~qd~ii~ 375 (396)
++ ..+.++.+|+.-.+|.+-+||.+ |+++.+++-+- ...|--.++++|+..+..-|.+
T Consensus 314 ss--p~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 314 TA--PAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred cc--CEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEE
Confidence 11 12367788888788999999986 68877665322 3355567788888777655543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.007 Score=64.62 Aligned_cols=147 Identities=12% Similarity=0.203 Sum_probs=121.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC-----ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~-----~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|+|.+ +|.-.|.-+.|+.+.+||=++.+++++|.++ .|--+.|||+.-=++..++ +...||||+.+++...+
T Consensus 196 VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--Dkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 196 VRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--DKTIKIWDVSTNSLVST 272 (603)
T ss_pred EEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--CceEEEEEeeccceEEE
Confidence 68999 6888888888999999999999999999963 4667899987777777777 79999999999988887
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
+.. ..+-+ +-=+=| ++-|+.=.=++.|..++....+..++-.+|.-...|.--++++..+++-|. |.|-=||.
T Consensus 273 ~~~--~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 273 WPM--GSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred eec--CCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 762 22211 111222 667777778999999999999999999999999999999999999999998 99999996
Q ss_pred cc
Q 016020 342 RG 343 (396)
Q Consensus 342 ~g 343 (396)
..
T Consensus 350 ~~ 351 (603)
T KOG0318|consen 350 GS 351 (603)
T ss_pred CC
Confidence 43
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.009 Score=66.37 Aligned_cols=164 Identities=18% Similarity=0.336 Sum_probs=130.2
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.+|.||.-- .| ||+. .+++|..++|+.++.+.+|+..+ ..|..|.=||-+=++.-.-. ...+.||++-.+
T Consensus 163 tal~HP~TY----LN-KIvv-Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~--~G~ViifNlK~d 234 (910)
T KOG1539|consen 163 TALLHPSTY----LN-KIVV-GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE--NGTVIIFNLKFD 234 (910)
T ss_pred eeEecchhh----ee-eEEE-eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc--CceEEEEEcccC
Confidence 556666421 13 3333 37799999999999999999998 77888888887665444443 678999999999
Q ss_pred cEEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
+.+++|++.-++=..+-|-- +|+.+|.-. .++-+-+||+-.++++.+.+ .|+-.|-.-.|+++..+.+|-+- ++.+
T Consensus 235 kil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 99999998766667788888 788887666 45889999999999999655 88899999999999999888776 8999
Q ss_pred EEeccc-----ceeeeecccccc
Q 016020 338 VWNFRG-----ELVTSFEDHLLW 355 (396)
Q Consensus 338 iWd~~g-----eL~t~fedh~l~ 355 (396)
+|=|+. .+..+=++|.-+
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~P 336 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAP 336 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCC
Confidence 999983 366777777544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=67.84 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=111.6
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV- 265 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s- 265 (396)
.-|-|.. +|..++.-..|++.|||+--+.+ .++++.. .+|.|+-|||+.-+|++-.+. ...||+.++|-.+.+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD---SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---ceEEEEeccCchhhhc
Confidence 6677877 77888888999999999966666 5555555 899999999999888988884 899999999922211
Q ss_pred -------------------------EEe------------e--------cccCCc--------cchhhhhcceeeEeecC
Q 016020 266 -------------------------FYH------------L--------LHRNKK--------VDFIEQFNEKLLVKQEN 292 (396)
Q Consensus 266 -------------------------~~~------------~--------L~~sk~--------i~FiE~~~ekLLIKQed 292 (396)
+.. - .-+++- ++=.+ .|+++.++-.+
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccC
Confidence 110 0 000000 23233 78999999999
Q ss_pred CeeeEEEcccceE-EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 293 ENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 293 ~~L~I~Dv~~~ki-~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
+++-||++.+=++ +.+++.|-+...+.-|+|+.+...+.|. .++.+--+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999999999554 4599999999999999999999999887 45444333
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0022 Score=66.07 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=108.9
Q ss_pred Eecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEc
Q 016020 223 SISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (396)
Q Consensus 223 sIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv 300 (396)
.|++ -=|.+|.+-||-..+....+ +-.+|||||++|+...++.=....-..+.|.. -.-||+..-||+-+++||+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~--DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSA--DRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCC--CceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEec
Confidence 3444 56889999999888888877 88899999999999888772223344577777 6789999999999999999
Q ss_pred ccceEEEecccccCCCceEEEeecCeEEEEE-EcCeEEEEeccc-ceeeeeccccccCCC--C-CCCcEEEccCCcEEEE
Q 016020 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG-ELVTSFEDHLLWHPD--C-NTNNIYITSDQDLIIS 375 (396)
Q Consensus 301 ~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf-s~gti~iWd~~g-eL~t~fedh~l~~~~--c-~~n~~~it~~qd~ii~ 375 (396)
..+|.++---+|--.+.+.--.|+-.+.+|- +|-+++|||.+- .-|-.+.+|-..+-. | ++|--.||...|--|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 9999886444443333343333444555555 447999999999 577788888777544 3 3455556666665554
Q ss_pred e
Q 016020 376 Y 376 (396)
Q Consensus 376 ~ 376 (396)
.
T Consensus 303 l 303 (460)
T KOG0285|consen 303 L 303 (460)
T ss_pred E
Confidence 3
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.026 Score=55.23 Aligned_cols=149 Identities=10% Similarity=0.101 Sum_probs=94.5
Q ss_pred EeeCCCCcEEEeecCC---CeEEEEeccCceEEEEe-ccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 192 EFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d---~~YrVwdlknYs~lysI-s~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.|.+ +|+-|+|...+ ..+.+||+.+.+..... .+..+..+++||+- .|++.....+..-+.++++.+|+...-+
T Consensus 196 ~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 196 AWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred cCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC
Confidence 3666 78888887653 47999999987532211 12345668999764 4444444445566788899888754433
Q ss_pred EeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C---eEEEE
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R---TVAVW 339 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g---ti~iW 339 (396)
.+. .....+.|.+ .+++|++-.+ ++ .|-++|+.+++...+.. +........|.+++++++..+. + .|.+|
T Consensus 275 ~~~-~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 275 NGP-GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred CCC-CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 311 1122457776 8889987654 33 56667888888766543 2344556778888776555444 3 78889
Q ss_pred ecccc
Q 016020 340 NFRGE 344 (396)
Q Consensus 340 d~~ge 344 (396)
|..+.
T Consensus 352 d~~~~ 356 (417)
T TIGR02800 352 DLDGG 356 (417)
T ss_pred eCCCC
Confidence 98873
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.055 Score=55.04 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=115.2
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecC-C--
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-D-- 207 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~-d-- 207 (396)
.+.+.-++.....|.++|.. +.. ..+... ++..|+ .+.|..-. .+-+-+.|.+ +|+.|++... +
T Consensus 200 ~~~~p~wSPDG~~la~~s~~-~g~-~~i~i~-----dl~~G~---~~~l~~~~--~~~~~~~~SP-DG~~La~~~~~~g~ 266 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFE-SGR-SALVIQ-----TLANGA---VRQVASFP--RHNGAPAFSP-DGSKLAFALSKTGS 266 (429)
T ss_pred ceeeeEEcCCCCEEEEEEec-CCC-cEEEEE-----ECCCCC---eEEccCCC--CCcCCeEECC-CCCEEEEEEcCCCC
Confidence 45667777777777776632 222 233322 222222 12232110 1122368888 7887776533 3
Q ss_pred CeEEEEeccCceEEEEecc--CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
..+.+||+++.+. ..+.. ..+.+..|||+-- |++........-+-++++.+|+.. .+...-+....+.|.+ .|+
T Consensus 267 ~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~Sp-DG~ 343 (429)
T PRK03629 267 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSS-DGK 343 (429)
T ss_pred cEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECC-CCC
Confidence 3588899988654 45554 4678999997643 333332222233444566666543 2221112223467776 888
Q ss_pred eeeEee-cC--CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C---eEEEEecccceeeee
Q 016020 285 KLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R---TVAVWNFRGELVTSF 349 (396)
Q Consensus 285 kLLIKQ-ed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g---ti~iWd~~geL~t~f 349 (396)
+|+.-. ++ ..|.+||+.+++...+..+. .-....|+++++..+..+. + .+.+|+++|...+.+
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 887643 33 45788999999887765432 2234568999987666665 3 378889999655544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00084 Score=72.97 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=116.4
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEE----cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKI----SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIki----Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
+..+.+.+-|+++|||+-++-.-+-.-.- +++--..+ |++--|++... +--+-||....+.+++.|+
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~---D~~i~v~~~~~~~P~~~Lk--- 98 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM---DTTIIVFKLSQAEPLYTLK--- 98 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc---cceEEEEecCCCCchhhhh---
Confidence 33466667799999999876554432222 12111111 23322223333 3445599999999999988
Q ss_pred ccCCccchhhhhcce-eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeee
Q 016020 271 HRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTS 348 (396)
Q Consensus 271 ~~sk~i~FiE~~~ek-LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~ 348 (396)
.|..-|+=+--+++- |+.++=|.+.+|| +.+++..+..+|....-|..+++++ .|||-|- .+|++|.- |.++.+
T Consensus 99 gH~snVC~ls~~~~~~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~t 174 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGTLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLKT 174 (745)
T ss_pred ccccceeeeecCCcCceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cchhhh
Confidence 777776544433333 5889999999999 5578888899999999999999999 9999887 89999987 788888
Q ss_pred eccccccCCC-C-CCCcEEEccCCcEEEEe
Q 016020 349 FEDHLLWHPD-C-NTNNIYITSDQDLIISY 376 (396)
Q Consensus 349 fedh~l~~~~-c-~~n~~~it~~qd~ii~~ 376 (396)
|.+|.-.+-- | -+++.|+|.+.|=+|=.
T Consensus 175 f~gHtD~VRgL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 175 FSGHTDCVRGLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred hccchhheeeeEEecCCCeEeecCCceEEE
Confidence 9887644322 2 24447777776665543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.035 Score=57.23 Aligned_cols=180 Identities=12% Similarity=0.123 Sum_probs=134.9
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
.+| |-..++....|.-=-||+..+..++|++.+ +-|.++-||-+-.+|....- ...++||...+|+..-++.
T Consensus 72 l~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm--sG~v~v~~~stg~~~~~~~--- 145 (399)
T KOG0296|consen 72 LHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM--SGKVLVFKVSTGGEQWKLD--- 145 (399)
T ss_pred eCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC--CccEEEEEcccCceEEEee---
Confidence 345 788888899999999999999999999999 99999999977776676665 5778999999999988775
Q ss_pred ccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c-e
Q 016020 271 HRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E-L 345 (396)
Q Consensus 271 ~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e-L 345 (396)
..-.+|..+. +-.--||-+.+|+++=.|.+-++..-+|-.+|.-+-.+=-|.|+++..+|..+ |+|.+||.-- + +
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 2223333332 24556889999999999999998888888999999999999999999888877 9999999865 4 3
Q ss_pred ee-eeccccccCCC--CCCCcEEEccCCcEEEEecc
Q 016020 346 VT-SFEDHLLWHPD--CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 346 ~t-~fedh~l~~~~--c~~n~~~it~~qd~ii~~~~ 378 (396)
-+ +-.+|...+.. --.....++..-|--++.|+
T Consensus 226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred EEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 22 33335444333 33333444444444444443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=62.46 Aligned_cols=192 Identities=14% Similarity=0.108 Sum_probs=149.3
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE-ecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys-Is~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
|.+.|-==+=|+.+++....++.+.++|++.-+.+.+ +.+ ++|--+++|++...+..... +=-+.|||..+-+.+
T Consensus 259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn--DN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN--DNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC--ccceEeccCCCcccc
Confidence 4554443344689999999999999999999997777 433 88889999999988777776 566789999887887
Q ss_pred EEEEeecccCCccchhhhhcceeeEe--ecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEE--EcCeEEE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTF--RNRTVAV 338 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIK--Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTf--s~gti~i 338 (396)
..+.-..+.-|=++|-+-+.+-|.++ ..|.-|++||+.+++.+.-..|. -+....+++... |+..|+ +.+.|.|
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 77663334445599999888888886 48999999999999999866555 567888888855 776665 4489999
Q ss_pred Eeccc-ceeeeeccccccCCC---CCCCcEEEccCCcEEEEeccCCC
Q 016020 339 WNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 339 Wd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
|+... .+++.+-.|..-+.. .||+...+|+.-|==+.+-+--+
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99988 788899888765544 77888888887776666665544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=73.89 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=109.0
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee--cccCCCCeEEeeCCCCcEEEeecCCC
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDS 208 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~--~~l~~PgfVEFDd~NgkIlt~~a~d~ 208 (396)
-+|.+-||-....+ +.+||+ -.+||-...-..... -+.. .... =+.||+ ||..||.++.||
T Consensus 98 p~r~~~v~g~g~~i----aagsdD-~~vK~~~~~D~s~~~--------~lrgh~apVl---~l~~~p-~~~fLAvss~dG 160 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMI----AAGSDD-TAVKLLNLDDSSQEK--------VLRGHDAPVL---QLSYDP-KGNFLAVSSCDG 160 (933)
T ss_pred cceEEEEecCCcEE----EeecCc-eeEEEEeccccchhe--------eecccCCcee---eeeEcC-CCCEEEEEecCc
Confidence 36677777543333 456777 456665443211111 1110 1111 378999 999999999999
Q ss_pred eEEEEeccCceEEEEecc-----Cc-----eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc--c
Q 016020 209 IYKVFDLKNYTMLYSISD-----KH-----VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--V 276 (396)
Q Consensus 209 ~YrVwdlknYs~lysIs~-----~~-----VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~--i 276 (396)
.++|||+.+.+....+.+ +. +-..+|+|..-=++.-+. .-.+|+++..++++++.+.-.+++++. +
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--DNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--CCeEEEEccCCceeheeecccccccceEEE
Confidence 999999999999998887 22 245677776332233334 356899999999999998877777755 9
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccce
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
+|.+ -|+||.-.--|+-|-|||+.+.+
T Consensus 239 ~wsP-nG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 239 QWSP-NGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred EEcC-CCcEEeeeccCCcEEEEecccch
Confidence 9999 59999999999999999999633
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0026 Score=66.38 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=117.2
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
++||-+++|++=--|.+... +-..-||.+-.-.+++-..-+..|..+ |-|.+ +.-|||.=-.++.+..||+-+|
T Consensus 225 dEVWfl~FS~nGkyLAsaSk--D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASK--DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred CcEEEEEEcCCCeeEeeccC--CceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcc
Confidence 78999999966555555544 677788888877775544445577777 55666 8899999999999999999999
Q ss_pred eEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeecccc---ccCCC-CCCCcEEEccCCcEEEEec
Q 016020 304 ELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHL---LWHPD-CNTNNIYITSDQDLIISYC 377 (396)
Q Consensus 304 ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fedh~---l~~~~-c~~n~~~it~~qd~ii~~~ 377 (396)
++.. .+.++.+++++-...||+.-|+|=+- |+|--||++|++..+-|+-. .|-.- ++|++.-++-+.|=-|.-+
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~ 381 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY 381 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence 9988 66677899999999999999999887 99999999999888877765 33222 7788877777766555555
Q ss_pred cC
Q 016020 378 KA 379 (396)
Q Consensus 378 ~~ 379 (396)
+-
T Consensus 382 ~~ 383 (519)
T KOG0293|consen 382 NR 383 (519)
T ss_pred ch
Confidence 43
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=70.43 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=53.4
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEecccccCCCc--eEEEeecCeE-EEEEEcCeEEEEecccc-eeeeecccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS--AFIFLYENQL-FLTFRNRTVAVWNFRGE-LVTSFEDHL 353 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps--AFiFly~~qL-FLTfs~gti~iWd~~ge-L~t~fedh~ 353 (396)
.+--|+++-|.++|-|||+..-....-...-...|. |.-.++|.++ |-.+++|.|.|||++-+ +|..|-+|-
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 788999999999999999998554432222222233 3334667776 77788899999999996 888998874
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.041 Score=55.62 Aligned_cols=152 Identities=11% Similarity=0.164 Sum_probs=92.4
Q ss_pred eEEeeCCCCcEEEee-cC--CCeEEEEeccCceEEEEeccC--ceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYS-AQ--DSIYKVFDLKNYTMLYSISDK--HVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~-a~--d~~YrVwdlknYs~lysIs~~--~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+.|++ +|+-+++. .. +..+.+||+.+.+ +..++.. ...+..+||+ -.|++........-+-++++.+|+..
T Consensus 252 ~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 252 APSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CceECC-CCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 457888 56644433 22 3468899998876 3456542 3467899974 34433332222334556677777643
Q ss_pred EEEEeecccCCccchhhhhcceeeEee-cCC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
. +..--.....+.|.+ .|++|+.-. +++ .|.+||+.+++...+.... ......|.++++.++..++ +.+
T Consensus 330 ~-lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 330 R-LTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred E-eecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEE
Confidence 2 221112233478877 899987743 332 6899999999887654332 3345578999886555554 368
Q ss_pred EEEecccceee
Q 016020 337 AVWNFRGELVT 347 (396)
Q Consensus 337 ~iWd~~geL~t 347 (396)
-+||.+|....
T Consensus 406 ~~~~~~g~~~~ 416 (433)
T PRK04922 406 AAVSTDGRVRQ 416 (433)
T ss_pred EEEECCCCceE
Confidence 88899885433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=63.59 Aligned_cols=135 Identities=14% Similarity=0.245 Sum_probs=101.2
Q ss_pred cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE
Q 016020 226 DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 226 ~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
.+.|..|++||....|+...= +..|.++++..-.....+++- ++--.++|.. ...++++--|+.++.+|+-+++-
T Consensus 13 ~d~IS~v~f~~~~~~LLvssW--DgslrlYdv~~~~l~~~~~~~-~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSW--DGSLRLYDVPANSLKLKFKHG-APLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEec--cCcEEEEeccchhhhhheecC-CceeeeeccC--CceEEEeccCceEEEEEecCCcc
Confidence 488999999976665555554 688999999988555555532 3334488887 67899999999999999999876
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc-eeeeeccc-cccCCCCCCCcEEE
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE-LVTSFEDH-LLWHPDCNTNNIYI 366 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge-L~t~fedh-~l~~~~c~~n~~~i 366 (396)
..+ -+|....++..++|+...++|=++ ++|++||.+.. .+.++|.- --+..+-..|++.+
T Consensus 88 ~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvV 150 (323)
T KOG1036|consen 88 DQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVV 150 (323)
T ss_pred eee-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEE
Confidence 654 488899999999999999999998 89999999973 44455432 23333444555555
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.035 Score=56.01 Aligned_cols=149 Identities=11% Similarity=0.159 Sum_probs=96.9
Q ss_pred EEeeCCCCcEEEeecC---CCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~---d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+.|.+ +|+.|+|.+. +..+.+||+.+... ..+++ ..+...+||| |-.|++.....+..-+-++++++|+...
T Consensus 207 p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 207 PRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred eEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 45666 6888888653 57899999988764 23433 4566889996 5466666555555567777988887643
Q ss_pred EEEeecccCCccchhhhhcceeeEeecC---CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEE
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVA 337 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~ 337 (396)
-+.+ -.....+.|.+ .+++|++.... ..|-++|+.+++...+.... .......|+++++..+..+. + .|.
T Consensus 285 Lt~~-~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 285 LTDS-PAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ccCC-CCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 2221 11223477887 89999987743 35777898888887765432 12234568898877655443 2 688
Q ss_pred EEecccc
Q 016020 338 VWNFRGE 344 (396)
Q Consensus 338 iWd~~ge 344 (396)
+||..|.
T Consensus 362 ~~d~~~~ 368 (435)
T PRK05137 362 VMKPDGS 368 (435)
T ss_pred EEECCCC
Confidence 8998773
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.025 Score=64.58 Aligned_cols=248 Identities=16% Similarity=0.188 Sum_probs=152.1
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCC-------------ceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPD-------------EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~-------------evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
..+.++-+.++.-..||.. |+.+-++-.+.. .--+.|.++..++.|.++-.+ . + ..+.++
T Consensus 580 g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-n----~-~Ir~id 652 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-N----H-ALREID 652 (1057)
T ss_pred CeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-C----c-eEEEEe
Confidence 4577777788888889864 666666644211 123667777655554442211 1 1 123222
Q ss_pred hh--hh--hhCCCCCCCcc--ee------ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc------
Q 016020 165 IE--YI--RRGKPDSGFAL--FE------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------ 226 (396)
Q Consensus 165 ~~--~i--~~gk~~~~~~L--F~------~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~------ 226 (396)
.. .+ ..|. |..- ++ ...+.+|--|-||+.+|.+...++.++.+++||..+.... .+.+
T Consensus 653 ~~~~~V~tlag~---G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 653 FVNETVRTLAGN---GTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred cCCCEEEEEecc---CcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 11 01 0110 1100 11 1247899999999999999999999999999999876532 1111
Q ss_pred -----------CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEE---------------------eecccC
Q 016020 227 -----------KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFY---------------------HLLHRN 273 (396)
Q Consensus 227 -----------~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~---------------------~~L~~s 273 (396)
.....|.++|+ -+|.+..... --+.+||+.+|+.....- -.+.+-
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 23456888864 4455555543 358889998876431110 001111
Q ss_pred CccchhhhhcceeeEeecCCeeeEEEcccceEEEec-------------ccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------------RTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-------------~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
..+.|-+ .|.-.+.-..++.|++||..++++..+. .+.++.|....+.+++++|++=++ +.|.+|
T Consensus 807 ~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 2345444 4554444558899999999998887643 335678999999999999998766 899999
Q ss_pred eccc-ce---ee-eeccccccCCCC
Q 016020 340 NFRG-EL---VT-SFEDHLLWHPDC 359 (396)
Q Consensus 340 d~~g-eL---~t-~fedh~l~~~~c 359 (396)
|.+. ++ .+ .+.+..+..+..
T Consensus 886 d~~~~~~~~~~~l~~~~~~~~~~~~ 910 (1057)
T PLN02919 886 DLNKGEAAEILTLELKGVQPPRPKS 910 (1057)
T ss_pred ECCCCccceeEeeccccccCCCCcc
Confidence 9987 33 12 444666665443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=60.18 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=137.8
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.-..|.. +|-.||..-.+|.+-+|||-+..---.+++ .-|+.+-||++=.+|+..++ +-.+++||+-+|.+++.+
T Consensus 27 ~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~--D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 27 ECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR--DWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred ceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC--CceeEEEeccCCCceeEE
Confidence 3456777 999999999999999999999997777777 88999999976666666666 567899999999999998
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc----cccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR----TEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~----t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
.+. .+--..+|.+.-..+-+.-+-++.=.+.++..++-...+. ...-.++.-.|-.-++..+|=-. |.+.|+|+
T Consensus 104 rf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 104 RFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred Ecc-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 854 2223478888888888999988888888888744333221 12234555567777787777655 99999999
Q ss_pred cc-ceeeeeccccccCCC------CCCCcEEEccCCcEEEEeccCC
Q 016020 342 RG-ELVTSFEDHLLWHPD------CNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 342 ~g-eL~t~fedh~l~~~~------c~~n~~~it~~qd~ii~~~~~~ 380 (396)
+. +.+.+|---- ++. .-.+..+|..++|=+|--+...
T Consensus 183 ~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99 6777764322 111 4456677888888777665544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.043 Score=55.54 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=87.9
Q ss_pred EEeeCCCCcEEEeecC---CCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~---d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
..|.+ +|+.|+|.+. ...+.+||+.+.+.. .+.+ ..+....|||+ -.|++........-+-++++.+|+ +.
T Consensus 201 p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~ 277 (427)
T PRK02889 201 PAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR 277 (427)
T ss_pred ceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence 35666 6888887654 346899999988643 3432 34567899975 455554444343344445555554 33
Q ss_pred EEEeecccCCccchhhhhcceeeEeec-CCeeeEEEc--ccceEEEecccccCCCceEEEeecCeEEEEEEc-C---eEE
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R---TVA 337 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~L~I~Dv--~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g---ti~ 337 (396)
.+...-.....+.|.+ .|++|++-++ ++..+||.+ .+++...+.... ......-|+++++..+..+. + .|.
T Consensus 278 ~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 278 RLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred ECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 3221011223477888 8999987664 456788865 456555443111 11123458898887655444 2 699
Q ss_pred EEeccc
Q 016020 338 VWNFRG 343 (396)
Q Consensus 338 iWd~~g 343 (396)
+||+.+
T Consensus 356 v~d~~~ 361 (427)
T PRK02889 356 VQDLAT 361 (427)
T ss_pred EEECCC
Confidence 999987
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=64.93 Aligned_cols=110 Identities=22% Similarity=0.236 Sum_probs=88.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
-|+|+| ++. +-+.++|.++|+|||.+....=+|.. +-+-+|..+|...|++...+ .-=+.+||=-+|..-+.-..
T Consensus 265 ~V~w~d-~~v-~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss--dr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 265 SVVWSD-ATV-IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS--DRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred eEEEcC-CCc-eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC--CCceeecCCCCCCCceeEEe
Confidence 578888 554 44578899999999999999988887 88999999999999999888 55578899988766655444
Q ss_pred ecccCCc---cchhhhhcce-eeEeecCCeeeEEEcccce
Q 016020 269 LLHRNKK---VDFIEQFNEK-LLVKQENENLQILDVRNAE 304 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ek-LLIKQed~~L~I~Dv~~~k 304 (396)
++.|++- +...+ .+++ ++...-|+..+.||+|+.+
T Consensus 341 ~~gH~nwVssvkwsp-~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSP-TNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred eecchhhhhheecCC-CCceEEEEEecCCeEEEEEeccCC
Confidence 6688775 45556 4454 5567899999999999977
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.041 Score=55.62 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=91.4
Q ss_pred EeeCCCCcEEEeecC---CCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 192 EFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 192 EFDd~NgkIlt~~a~---d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.|.+ +|+-++|.+. +..+.+||+.+.+.. .|.+ ......+|||+ -.|++....++.--|.++++.+|+...-
T Consensus 210 ~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l 287 (433)
T PRK04922 210 AWSP-DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL 287 (433)
T ss_pred cCCC-CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC
Confidence 4455 6777777653 346889999887742 2332 23457899964 4455544444445688899999875432
Q ss_pred EEeecccCCccchhhhhcceeeEeec-CCe--eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQE-NEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAV 338 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~i 338 (396)
..+ -.....+.|.+ .+.+|+...+ ++. |-++|+.+++...+.... ......-|+++++.++..+. + .|.+
T Consensus 288 t~~-~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 288 TNH-FGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred ccC-CCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 221 11223478888 8999988764 333 555677788776654222 22345678888887554432 2 6999
Q ss_pred Eeccc
Q 016020 339 WNFRG 343 (396)
Q Consensus 339 Wd~~g 343 (396)
||+++
T Consensus 365 ~d~~~ 369 (433)
T PRK04922 365 MDLST 369 (433)
T ss_pred EECCC
Confidence 99977
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0042 Score=64.14 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=98.8
Q ss_pred eCCCCcEEEeecCCCeEEEEeccCc---eEEEE-eccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeec---CcEEEEE
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLKNY---TMLYS-ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED---GTVLKVF 266 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlknY---s~lys-Is~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet---G~~l~s~ 266 (396)
.++-.-++|+++.|+.+|+||.+.. .++.. -.+-+|-=|-|+...-||++... ...++|||+-. |+++..|
T Consensus 266 SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D--dGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 266 SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD--DGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC--CceEEEEEhhhccCCCcceeE
Confidence 4555678999999999999999999 44444 33367777888887778888877 78899999865 8888899
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEE-----EecccccCCCceEEEeecCeEEE
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-----EVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~-----~v~~t~~~~PsAFiFly~~qLFL 329 (396)
++--++=-.|+|-++..+-|+..-+|+-+-|||+..-.=. +-..+-...|--.+|++.+|-++
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~ 411 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV 411 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence 9422333338899888999999999999999999863221 11112235566788888777543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0052 Score=64.44 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=131.4
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
||.++...+|..+-|||-.+.+-++..++ ..|....|..|..=|....+ +-.+|+|+++.-.-+.++- .|...
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~--Drsvkvw~~~~~s~vetly---GHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA--DRSVKVWSIDQLSYVETLY---GHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec--CCceEEEehhHhHHHHHHh---CCccc
Confidence 89999999999999999999999999888 89999999999988888888 7889999998865555433 33333
Q ss_pred -cchhhhhcce-eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc--eee-ee
Q 016020 276 -VDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE--LVT-SF 349 (396)
Q Consensus 276 -i~FiE~~~ek-LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge--L~t-~f 349 (396)
.+--.+.-|. +-++-.|.+.++|+| .-+.+.|-+++--.|.+.-|..+.. |+|=|+ |+|.+|++.-. |-| ..
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred eeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEeec
Confidence 2222223344 445669999999999 6666667777777888888887765 566555 99999999883 555 34
Q ss_pred ccccccCCCCCCCcEEEc-----cCCcEEEEeccCCCCCcc
Q 016020 350 EDHLLWHPDCNTNNIYIT-----SDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 350 edh~l~~~~c~~n~~~it-----~~qd~ii~~~~~~~~~~~ 385 (396)
-.++...+...+++-+|| ...||..|.-....---|
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence 444444445666555555 577888877543333334
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.17 Score=45.15 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=107.3
Q ss_pred CCeEEEEeccCceEEEEecc----CceEEEEE-cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh
Q 016020 207 DSIYKVFDLKNYTMLYSISD----KHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~----~~VqEIki-Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~ 281 (396)
++++..||+++.+.+.+..- .......+ .+|.++... ..--|..||+.||+.+-++.. ....... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS----GDGNLYALDAKTGKVLWRFDL--PGPISGA-PVV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE----TTSEEEEEETTTSEEEEEEEC--SSCGGSG-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc----CCCEEEEEECCCCCEEEEeec--cccccce-eee
Confidence 57788899999999988853 22221133 566655442 345678899999999998883 2211122 145
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEe-cccc-----cCCCceEEEeecCeEEEEEEcCeEEEEecc-cceeeeeccccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEV-SRTE-----FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLL 354 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~-----~~~PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fedh~l 354 (396)
.++.+++-..++.|..+|..+++++-. ..+. ...+.+.. ++++.+++...++.+-.+|.. |+++-...-+.+
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 778888888888999999999999886 3332 22233333 337777777778999999955 776554433321
Q ss_pred c-------------CCCCCCCcEEEccCCcEEEEeccCCCCC-cc
Q 016020 355 W-------------HPDCNTNNIYITSDQDLIISYCKAEPED-QW 385 (396)
Q Consensus 355 ~-------------~~~c~~n~~~it~~qd~ii~~~~~~~~~-~~ 385 (396)
- .+-=.++.+|++..+-.+++. ...... .|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEE
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEE
Confidence 1 111235689998877766666 544443 35
|
... |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.016 Score=60.63 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCeEEEEEeEecCCCceeeeEeeehhh----hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEec
Q 016020 140 NNDSLITVSVYASDNFSSLKCRSTKIEY----IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (396)
Q Consensus 140 ~n~slI~vSv~~sd~~s~L~cr~~~~~~----i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdl 215 (396)
..|+||++--..+|. |+|.|+.-..++ +..--+-..+|| +.+-|.||- =++.-|--+|-.-=|..+.||||
T Consensus 135 psDnlIl~ar~eddv-s~LEvYVyn~~e~nlYvHHD~ilpafPL-C~ewld~~~---~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 135 PSDNLILCARNEDDV-SYLEVYVYNEEEENLYVHHDFILPAFPL-CIEWLDHGS---KSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred cCCcEEEEeeccCCc-eEEEEEEEcCCCcceeEecceeccCcch-hhhhhhcCC---CCCCCcceEEEeccCceeEEecc
Confidence 679999976555555 999999986543 222222233333 223333311 02333333444445779999998
Q ss_pred cCce------EEEE-------------eccCceE----EEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecc
Q 016020 216 KNYT------MLYS-------------ISDKHVQ----EIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (396)
Q Consensus 216 knYs------~lys-------------Is~~~Vq----EIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~ 271 (396)
-=.- .|-+ +++..-. .+.+. .-..+|++.++ +-.+++||+.+|++-.++. |
T Consensus 210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsa--D~TV~lWD~~~g~p~~s~~---~ 284 (463)
T KOG0270|consen 210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSA--DKTVKLWDVDTGKPKSSIT---H 284 (463)
T ss_pred ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCC--CceEEEEEcCCCCcceehh---h
Confidence 5332 1211 1111111 11111 22356677777 7889999999999999999 8
Q ss_pred cCCc---cchhhhhcceeeEeecCCeeeEEEccc
Q 016020 272 RNKK---VDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 272 ~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
|+++ ++|-..-.+.||.+.-|+.+.+.|+|.
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 9999 567777789999999999999999993
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.024 Score=59.68 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=116.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC---------ceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn---------Ys~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet 259 (396)
+.|.+ ||..+...+.|+.+.||++.+ -+.++..++ --|.|+++++|=...-.-.+..+=.+|+||+..
T Consensus 129 L~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 129 LKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 45777 899999999999999999863 347788887 789999999882221222233467899999999
Q ss_pred CcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccc----------------eEEEecccccC--CCceEEE
Q 016020 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA----------------ELMEVSRTEFM--TPSAFIF 321 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~----------------ki~~v~~t~~~--~PsAFiF 321 (396)
|..|.++.+ +++-.--=+...+--++|+-+++.+-+.++-+- .-+.+..+|.. ..++.--
T Consensus 208 g~LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 208 GVLLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ceeeEEEec--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 999998875 333332223345567889999999888887542 24456777777 7788888
Q ss_pred eecCeEEEEEEc-CeEEEEeccc-ceeeee
Q 016020 322 LYENQLFLTFRN-RTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 322 ly~~qLFLTfs~-gti~iWd~~g-eL~t~f 349 (396)
.-|+.|.++=+. |+|-|||..+ +.+.++
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 889999999887 9999999998 644443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0066 Score=63.12 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=108.4
Q ss_pred EeeCCCCcEEEee---cCCCeEEEEecc-Cce-----EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 192 EFDDVNGKVLTYS---AQDSIYKVFDLK-NYT-----MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 192 EFDd~NgkIlt~~---a~d~~YrVwdlk-nYs-----~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-||.||.|-+|-. +..+.+-|-=+. .+. .++-=.-..|.||.|+|.-=-.+.. -+.+-.++||.|-++..
T Consensus 38 ~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS-gSeD~~v~vW~IPe~~l 116 (472)
T KOG0303|consen 38 SFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS-GSEDTKVMVWQIPENGL 116 (472)
T ss_pred cccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeec-CCCCceEEEEECCCccc
Confidence 3788888877632 223444444331 111 1111111678999999754332222 22467899999988655
Q ss_pred EEE----EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C
Q 016020 263 LKV----FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R 334 (396)
Q Consensus 263 l~s----~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g 334 (396)
... ...|-.|+++ |+.-+.-.+-||...-|..+.||||.|++....+. |-+.....-|.++++++.|-+. .
T Consensus 117 ~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 117 TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc
Confidence 443 2345588888 67777778888999999999999999999887766 9899999999999999999887 8
Q ss_pred eEEEEeccc-ceee
Q 016020 335 TVAVWNFRG-ELVT 347 (396)
Q Consensus 335 ti~iWd~~g-eL~t 347 (396)
.|+|||-+- +++.
T Consensus 196 kvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVS 209 (472)
T ss_pred eeEEEcCCCCcEee
Confidence 999999876 4443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.18 Score=49.22 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=89.6
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc--CC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR--NK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~--sk 274 (396)
++.+.+ ...++.+..||+++.+.+++.+........+.+|.+.+.. ....+..+|..+|+.+-+...+-.+ +.
T Consensus 241 ~~~vy~-~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 241 GGQVYA-VSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTD----ADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred CCEEEE-EEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEEC----CCCeEEEEECCCCcEEEccccccCCcccc
Confidence 355555 3457888899999999888776444444556666655432 3467889999999988765311111 11
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEE
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAV 338 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~i 338 (396)
++ ..+++|++.-+++.|.++|..+++++-..+.+...-.+--.++++.||+.-.+|++-.
T Consensus 316 p~----i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 316 PA----VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred CE----EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEE
Confidence 11 2578999999999999999999999865443332112222467788999999987754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.085 Score=53.31 Aligned_cols=133 Identities=12% Similarity=0.136 Sum_probs=85.4
Q ss_pred CeEEEEeccCceEEEEec--cCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs--~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
..+.+||..++. +..++ ...+...+|||+-- |+.....+..--+.+|++.+|+...-..+. .......|.+ .|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SP-DG~ 258 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSP-DGR 258 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECC-CCC
Confidence 366677775554 33343 36899999997654 433333344567899999999875432211 2333467777 888
Q ss_pred eeeEe-ecCCe--eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEecccc
Q 016020 285 KLLVK-QENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRGE 344 (396)
Q Consensus 285 kLLIK-Qed~~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~ge 344 (396)
+|++- ..+++ |-+||+.++++..+.... ......-|.++++.++..++ | .|-+||.+|.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 88654 45555 555699999988764432 23456788999886655554 3 5777788884
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.038 Score=56.60 Aligned_cols=191 Identities=16% Similarity=0.258 Sum_probs=112.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceE------EEEeccCceEEEEEcCCeEEEEEec-CCCeeeeEEEE-eecCcE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM------LYSISDKHVQEIKISPGIMLLIFNR-SSSHVPLKILS-IEDGTV 262 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~------lysIs~~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~-IetG~~ 262 (396)
+.|.- |||-+|..+.|..+||||++|+.. =-.+..++-.-|+|+|+---++..- ..+.+.+-=++ =++|..
T Consensus 92 ~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 92 VAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred eEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 57877 899999999999999999999872 2234446788888888743322221 22222221111 122333
Q ss_pred EEEEEee----cccCCccch----hhhhcceeeEeecCCeeeEEEcccceEEE-e------------cc-c-----ccCC
Q 016020 263 LKVFYHL----LHRNKKVDF----IEQFNEKLLVKQENENLQILDVRNAELME-V------------SR-T-----EFMT 315 (396)
Q Consensus 263 l~s~~~~----L~~sk~i~F----iE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v------------~~-t-----~~~~ 315 (396)
...+.+. .++...++- +.--+.+|+...+|..|-+||++ |+++- + ++ + -.|+
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 3322211 111111111 22346789999999999999998 54432 1 11 1 1234
Q ss_pred Cc-------------------------------eEEEeecCeEEEEEEc-CeEEEEecccc------eeeeeccccccCC
Q 016020 316 PS-------------------------------AFIFLYENQLFLTFRN-RTVAVWNFRGE------LVTSFEDHLLWHP 357 (396)
Q Consensus 316 Ps-------------------------------AFiFly~~qLFLTfs~-gti~iWd~~ge------L~t~fedh~l~~~ 357 (396)
|. +|-|+++++-.+|.|. |+++|||.+=+ .++.=+...+.+.
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a 329 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA 329 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh
Confidence 43 4445788899999988 99999999752 2222222222221
Q ss_pred ---------CCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 358 ---------DCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 358 ---------~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
.||++.++-.+---=|=-||--++.+
T Consensus 330 ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 330 AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD 364 (420)
T ss_pred cCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc
Confidence 18888887666655566677766554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0088 Score=63.02 Aligned_cols=147 Identities=13% Similarity=0.206 Sum_probs=111.9
Q ss_pred EeeCCCCc-EEEeecCCCeEEEEeccCce-----EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 192 EFDDVNGK-VLTYSAQDSIYKVFDLKNYT-----MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 192 EFDd~Ngk-Ilt~~a~d~~YrVwdlknYs-----~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
+|-+ ||. .+..++...-+.+|||.+-+ .+|-....-+.-+++|+....++.++.. ..+.|+..-||+.+.+
T Consensus 264 ~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 264 EFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--GHIHLLHAKTKELITS 340 (514)
T ss_pred eecC-CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC--ceEEeehhhhhhhhhe
Confidence 4445 788 88888889999999999877 4555555678889999988888888884 5568899999999999
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec-ccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+++- +.-+.+.|.. +++.|++--.++.+-+|||+..++++.- ....-.-..+-=+.++++|-|=|+ |-|-|||.+.
T Consensus 341 ~Kie-G~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 341 FKIE-GVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eeec-cEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 9854 6667788997 8888888888999999999999888721 111112222223456777777787 9999999665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=60.41 Aligned_cols=150 Identities=14% Similarity=0.199 Sum_probs=108.1
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce---EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs---~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|+.|.+ |||-||..+.|.+-.+|..-+=. ..+.+-+ ..|.=|.|||+---|+.=+...+ +++||+.||....
T Consensus 229 fl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~--~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 229 FLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV--LSLWDVDTGDLRH 305 (519)
T ss_pred EEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--eeeccCCcchhhh
Confidence 899999 99999999999999999865543 4555554 88999999999988888888665 9999999999887
Q ss_pred EEEeecccCC-ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEcCeEEEEecc
Q 016020 265 VFYHLLHRNK-KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRNRTVAVWNFR 342 (396)
Q Consensus 265 s~~~~L~~sk-~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~gti~iWd~~ 342 (396)
...+-++-+. .+...+ ++--++.+.-|..+--||+--+++..---.........--.||+.. +++..+-.|.++++.
T Consensus 306 ~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred hcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 6653322222 255566 7888999999999999998766554422222111222222345554 555666899999987
Q ss_pred c
Q 016020 343 G 343 (396)
Q Consensus 343 g 343 (396)
.
T Consensus 385 ~ 385 (519)
T KOG0293|consen 385 A 385 (519)
T ss_pred h
Confidence 6
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.087 Score=53.30 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=105.7
Q ss_pred EeecCCCeEEEEeccCceEEEEecc-CceE-EEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC-Cccc
Q 016020 202 TYSAQDSIYKVFDLKNYTMLYSISD-KHVQ-EIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-KKVD 277 (396)
Q Consensus 202 t~~a~d~~YrVwdlknYs~lysIs~-~~Vq-EIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s-k~i~ 277 (396)
.....++...|.|.++.+.+-+|.. .++. .+++|| |-.+.+..+. -.+.++|+.+++.++++.. ... .-+.
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd---g~vsviD~~~~~~v~~i~~--G~~~~~i~ 84 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD---GTVSVIDLATGKVVATIKV--GGNPRGIA 84 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT---SEEEEEETTSSSEEEEEE---SSEEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC---CeEEEEECCcccEEEEEec--CCCcceEE
Confidence 4567789999999999999999985 5553 467887 7777777654 4789999999999998772 222 2277
Q ss_pred hhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCC-------ceEEEeecCeEEE-EEEc-CeEEEEeccc--ce
Q 016020 278 FIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTP-------SAFIFLYENQLFL-TFRN-RTVAVWNFRG--EL 345 (396)
Q Consensus 278 FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~P-------sAFiFly~~qLFL-Tfs~-gti~iWd~~g--eL 345 (396)
+.. .|.|+++. +..+.+.|+|..+.|.++.-++..++. +|...++.+..|+ ++.+ +.|-+-|.+. .+
T Consensus 85 ~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 775 99999987 589999999999999998666655443 5788889888665 5665 6666667655 35
Q ss_pred ee-eeccccccCCC--CCCCcEEEc
Q 016020 346 VT-SFEDHLLWHPD--CNTNNIYIT 367 (396)
Q Consensus 346 ~t-~fedh~l~~~~--c~~n~~~it 367 (396)
++ .++---..|.- -+++.+|+.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ceeeecccccccccccCcccceeee
Confidence 44 33221222222 667777766
|
... |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=59.76 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=113.0
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEE------e--------ecCc-
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILS------I--------EDGT- 261 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~------I--------etG~- 261 (396)
-|+..-+.|.+-++|.++...||..-.+ --|-.|||++.-.|++..+- +-..+||- + +.|+
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG--D~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG--DETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC--CcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3566667799999999999999988887 77999999988877777654 33344442 0 1111
Q ss_pred -------------------------EEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 262 -------------------------VLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 262 -------------------------~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
++++|. .|... .+.+. -++.++...=|-.-++|||.+++....+-+|.
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt---gH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd 314 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT---GHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHD 314 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeee---ccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcc
Confidence 122232 33333 56666 78889999999999999999999999888886
Q ss_pred CCCceEEEeecCeEEEEEEc-CeEEEEeccc--ceeeeeccccccCCCCCCCcEEE
Q 016020 314 MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYI 366 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--eL~t~fedh~l~~~~c~~n~~~i 366 (396)
---.-----++..|.||.|- .|+++|||+- +-|.-|.+|- +.++--.|-
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt----dtVTS~vF~ 366 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT----DTVTSVVFN 366 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc----cceeEEEEe
Confidence 44333334568888888877 7999999997 3667888874 344444443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.029 Score=60.99 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=111.4
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE-----------
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK----------- 264 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~----------- 264 (396)
.|.+|++.+.||+.|||-+.++-+++.+.= ..|++|.|+|+.-+-+..-+...- +-|++=.=|..+.
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcC
Confidence 899999999999999999999999999875 899999999875332222111111 1122211121111
Q ss_pred -----------------------EEEeecccCCccchhh--hhcceeeEee---cCCeeeEEEcccceEEEecccccCCC
Q 016020 265 -----------------------VFYHLLHRNKKVDFIE--QFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTP 316 (396)
Q Consensus 265 -----------------------s~~~~L~~sk~i~FiE--~~~ekLLIKQ---ed~~L~I~Dv~~~ki~~v~~t~~~~P 316 (396)
..+..+.+-|+|.=++ .-|.||.+-+ .+.++.|++|..++.+.--+-..-+|
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 1122223333332222 1466776544 67889999999988886555566678
Q ss_pred ceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccccccCCC----CCCCcEEEcc
Q 016020 317 SAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHPD----CNTNNIYITS 368 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~~~~----c~~n~~~it~ 368 (396)
-+..|-+..-.||...-+.|.|||+.- +||-.+.--.-|.+. .+-+|+++.+
T Consensus 570 q~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred eEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 899999999999999999999999988 455544433344333 3344555444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.037 Score=57.43 Aligned_cols=170 Identities=15% Similarity=0.217 Sum_probs=105.5
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEE------------------EEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQE------------------IKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqE------------------IkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
|..+.|.-+..+.+.||||.......+=+.-.++. +-|||-.-= ....-....-+.+|-..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-ccccCccccceEeeeec
Confidence 67788888889999999997643222222122222 233330000 00000122445666667
Q ss_pred cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 259 DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
+|.=-..-.-+..|++. +|..+--..-+..-.=|++|+|||+|++ -++-+ ++|.-..-..=|...-. ||.+-
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~-lLasG 320 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREP-LLASG 320 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcc-eeeec
Confidence 76655544444567776 6777767778888999999999999998 45555 45555666666666555 55554
Q ss_pred c--CeEEEEeccc----ceeeeeccccc------cCCCCCCCcEEEccCCc
Q 016020 333 N--RTVAVWNFRG----ELVTSFEDHLL------WHPDCNTNNIYITSDQD 371 (396)
Q Consensus 333 ~--gti~iWd~~g----eL~t~fedh~l------~~~~c~~n~~~it~~qd 371 (396)
+ |++.|||++- +.|+.|.-|-- |+|. +..++.++..|
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~--e~s~iaasg~D 369 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH--EDSVIAASGED 369 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc--cCceEEeccCC
Confidence 4 9999999985 58899999854 5554 44444444333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.031 Score=60.93 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=81.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEE------EEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTML------YSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~l------ysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.-||+-.-.|+.+.+||-+-.++- |.--+ ..|.|+++=||=++|+.+.- +=.++.||+.+++....= .
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG--DsT~r~Wdvk~s~l~G~~-~ 139 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG--DSTIRPWDVKTSRLVGGR-L 139 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC--Cceeeeeeeccceeecce-e
Confidence 4567777777888888888776644 44333 78999999999999999887 667899999999988862 3
Q ss_pred ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 269 LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
.++|... ++|+...-.-...+-.|+.+.|||++-..
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 3466544 99999555566678899999999998655
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.043 Score=55.06 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=109.5
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCC-----------------------
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSS----------------------- 247 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~----------------------- 247 (396)
+-|--+.+.+ ..+.|.+.|+||.+++++++.+.- .-|+-+-+|.|=.+.+..-.+
T Consensus 59 Did~~s~~li-TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 59 DIDWDSKHLI-TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred EecCCcceee-eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 4444333444 466799999999999999999976 667777776443332221111
Q ss_pred -----------------------------CeeeeEEEEeecCcEEEEEEeeccc--CCccchhhhhcceeeEeecCCeee
Q 016020 248 -----------------------------SHVPLKILSIEDGTVLKVFYHLLHR--NKKVDFIEQFNEKLLVKQENENLQ 296 (396)
Q Consensus 248 -----------------------------~~iplkIl~IetG~~l~s~~~~L~~--sk~i~FiE~~~ekLLIKQed~~L~ 296 (396)
....+.+||+.+|++++.-.- +|. =+.+||.. ..-+.+....|..-+
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~-d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDLQFSR-DRTYFITGSKDTTAK 215 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-hhccccccccccC-CcceEEecccCccce
Confidence 235678888888888875331 122 23499988 999999999999999
Q ss_pred EEEcccceEEEecccccCCCceEEE-------eecCeE--EEEEEc---CeEE--EEeccc-ceeeeecccccc---CCC
Q 016020 297 ILDVRNAELMEVSRTEFMTPSAFIF-------LYENQL--FLTFRN---RTVA--VWNFRG-ELVTSFEDHLLW---HPD 358 (396)
Q Consensus 297 I~Dv~~~ki~~v~~t~~~~PsAFiF-------ly~~qL--FLTfs~---gti~--iWd~~g-eL~t~fedh~l~---~~~ 358 (396)
+||+.+=+++++-.|+-.--.|.++ +-.+|- =||--+ |..+ +|++-- |-..+..+|.=+ +..
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 9999999999976666544444444 333332 111111 2222 222222 233344445332 223
Q ss_pred CCCCcEEEccCCcE
Q 016020 359 CNTNNIYITSDQDL 372 (396)
Q Consensus 359 c~~n~~~it~~qd~ 372 (396)
-|+++-|-|..+|=
T Consensus 296 hPdGksYsSGGEDG 309 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDG 309 (327)
T ss_pred CCCCcccccCCCCc
Confidence 67888887777763
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=60.62 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=113.9
Q ss_pred CCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCe
Q 016020 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSH 249 (396)
Q Consensus 174 ~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ 249 (396)
..|..||..-+-. =+=+.|.+.|---+-+++-||++|.=|+++-. .+|+..+ .-+....++..--.+++..+ .
T Consensus 224 ~d~v~~f~~hs~~-Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~--~ 300 (498)
T KOG4328|consen 224 KDGVYLFTPHSGP-VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN--V 300 (498)
T ss_pred cCceEEeccCCcc-ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec--c
Confidence 3445566542111 23467888887777778889999999999865 7788843 44556667644333344444 4
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc--ceE---EEecccccCCCceEEE
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN--AEL---MEVSRTEFMTPSAFIF 321 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~--~ki---~~v~~t~~~~PsAFiF 321 (396)
.-+.+||.-+++-.+..- .||. ++ |++.++.-++|+...-|+..+|||+++ +|- +. .-.|.-.+.|.-|
T Consensus 301 G~f~~iD~R~~~s~~~~~-~lh~-kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~HrrsV~sAyF 377 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENL-RLHK-KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRSVNSAYF 377 (498)
T ss_pred cceEEEEeecCCccchhh-hhhh-cccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee-cccccceeeeeEE
Confidence 488999999988766422 2333 45 899999999999999999999999997 221 22 1256677888889
Q ss_pred eecCeEEEEEE-cCeEEEEecc
Q 016020 322 LYENQLFLTFR-NRTVAVWNFR 342 (396)
Q Consensus 322 ly~~qLFLTfs-~gti~iWd~~ 342 (396)
+|.+.-.||=+ +.+|.|||..
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCceEeeccCCceEEeecc
Confidence 99665555554 5999999994
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.39 Score=44.28 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=113.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEec-----cCceEEEEEcCCeEEEEEecCCCeee----eEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-----DKHVQEIKISPGIMLLIFNRSSSHVP----LKILS 256 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs-----~~~VqEIkiSpg~~Ll~~q~~~~~ip----lkIl~ 256 (396)
|.=+-++..+|+++.... +...++|+++.+ .+.... ....-++++.|.=.|.+......... =+|+-
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 555666633588877553 344555988875 566662 26677899986665666666543322 35777
Q ss_pred eecCcEEEEEEeecccCCccchhhhhcceeeE-eecCCeeeEEEccc--ceEE---Eeccccc--CCCceEEEeecCeEE
Q 016020 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN--AELM---EVSRTEF--MTPSAFIFLYENQLF 328 (396)
Q Consensus 257 IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~Dv~~--~ki~---~v~~t~~--~~PsAFiFly~~qLF 328 (396)
+..+.......-.++..+-|.|.+ .++.|++ -...+.|..||+.. +++. .+..... -.|..+.+-.++.||
T Consensus 120 ~~~~~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 120 IDPDGKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EETTSEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred ECCCCeEEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 776644444444567778899998 7877774 56788899999963 2122 1211122 248889999999999
Q ss_pred EEEEc-CeEEEEecccceeeeeccccccCCC-----CCCCcEEEcc
Q 016020 329 LTFRN-RTVAVWNFRGELVTSFEDHLLWHPD-----CNTNNIYITS 368 (396)
Q Consensus 329 LTfs~-gti~iWd~~geL~t~fedh~l~~~~-----c~~n~~~it~ 368 (396)
++... +.|.++|-+|+++..++--....-+ ...+.+|||+
T Consensus 199 va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99775 9999999999988777643222222 2346677775
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.048 Score=54.33 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=76.2
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecccccCCC-------ceE
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP-------SAF 319 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~P-------sAF 319 (396)
+--+.-||+|||+..+.++ +|+-++-=+- --+..||.+.||+..+|||++|+|...|...+..+- +-.
T Consensus 135 D~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred CeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 4567789999999999998 7766633221 257789999999999999999999999877665432 223
Q ss_pred EEeecCeEEEEEEcC-eEEEEeccc-ceeeeec
Q 016020 320 IFLYENQLFLTFRNR-TVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 320 iFly~~qLFLTfs~g-ti~iWd~~g-eL~t~fe 350 (396)
-.+..++..|.---| ...+|.+++ +-++.|-
T Consensus 212 gala~~edWlvCGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 212 GALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred EEEeccCceEEecCCCceeEEeccCCCceEEEe
Confidence 568888888877665 789999998 6666553
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.13 Score=52.20 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=86.9
Q ss_pred CCeEEeeCCCCcEEEeecCCCe--EEEEeccCceEEEEe--ccCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSI--YKVFDLKNYTMLYSI--SDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~--YrVwdlknYs~lysI--s~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
||++. ++|+-.....+. +.+||..+.. .-.+ ..+.+...+|||+-- |+.....+..--+.++++.+|+.
T Consensus 159 ~g~f~-----~~iayv~~~~~~~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~ 232 (427)
T PRK02889 159 RGVFS-----TRIAYVIKTGNRYQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR 232 (427)
T ss_pred Ccccc-----cEEEEEEccCCccEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence 66643 565444433334 4455554333 2222 347788999997654 43333333334589999999987
Q ss_pred EEEEEeecccCCccchhhhhcceeeE-eecCCeeeEEE--cccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEE
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVA 337 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~D--v~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~ 337 (396)
..-..+. .....+.|.+ ++.+|++ ...+++.+||. +.++++..+... ........|+++++.++..++ |...
T Consensus 233 ~~l~~~~-g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 233 RVVANFK-GSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred EEeecCC-CCccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 5433221 3334578888 8888875 45666766665 556676665332 223345679999986655565 6788
Q ss_pred EEecc
Q 016020 338 VWNFR 342 (396)
Q Consensus 338 iWd~~ 342 (396)
||..+
T Consensus 310 Iy~~~ 314 (427)
T PRK02889 310 IYRMP 314 (427)
T ss_pred EEEEE
Confidence 88664
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.4 Score=47.20 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=106.6
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--E--EE--Eecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M--LY--SISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~--ly--sIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl 255 (396)
.-.||-.+-|++-...+.+.+.-...+.+|++.+.. + .- .+.. ..=.-+.|+|+ -.+.+...-.+.+ .++
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v--~v~ 219 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTV--SVF 219 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEE--EEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcE--EEE
Confidence 457888999999666688888888899999997765 2 12 2222 55567888865 3444555554444 445
Q ss_pred Eee--cCcEEEEEE-eeccc-------CCccchhhhhcceeeEeecC-CeeeEEEc--ccceEEE--ecccccCCCceEE
Q 016020 256 SIE--DGTVLKVFY-HLLHR-------NKKVDFIEQFNEKLLVKQEN-ENLQILDV--RNAELME--VSRTEFMTPSAFI 320 (396)
Q Consensus 256 ~Ie--tG~~l~s~~-~~L~~-------sk~i~FiE~~~ekLLIKQed-~~L~I~Dv--~~~ki~~--v~~t~~~~PsAFi 320 (396)
++. +|+....-. -.++. ...|.+.+ .+.+|++-..+ .+|-+|++ .++++.. .-.+....|+.|.
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 666 664332211 12221 22377776 89999997755 56999999 3455554 3445677899999
Q ss_pred EeecCeEEEEEE-c-CeEEEEeccc---ceeeeeccccccCCCC
Q 016020 321 FLYENQLFLTFR-N-RTVAVWNFRG---ELVTSFEDHLLWHPDC 359 (396)
Q Consensus 321 Fly~~qLFLTfs-~-gti~iWd~~g---eL~t~fedh~l~~~~c 359 (396)
|.++++..++.. + ++|.+|+.+. .|...-.......|.|
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 999888655443 4 8999998864 3544333344444444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.31 Score=48.72 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=89.9
Q ss_pred eEEeeCCCCcEEEeecCC---CeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d---~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
...|.+ +|+-|+|.+.+ ..+.+||+.+.+. ..+.. ..+...+|||+ -.|++.....+..-+.++++.+|+..
T Consensus 203 ~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 203 SPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 345676 68888776543 4678889988753 23332 33457899964 55555554444556778899998754
Q ss_pred EEEEeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti 336 (396)
.-+... .....+.|.+ .+++|++..+ ++ .|-++|+.+++...+.... .....-.|+++++..+..+. + .|
T Consensus 281 ~lt~~~-~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l 357 (430)
T PRK00178 281 RVTNHP-AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHV 357 (430)
T ss_pred EcccCC-CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEE
Confidence 322211 1122367777 7888888764 22 4666688888876653211 11122357787776444432 3 47
Q ss_pred EEEeccc
Q 016020 337 AVWNFRG 343 (396)
Q Consensus 337 ~iWd~~g 343 (396)
.+||+.+
T Consensus 358 ~~~dl~t 364 (430)
T PRK00178 358 AAQDLQR 364 (430)
T ss_pred EEEECCC
Confidence 7889887
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.064 Score=55.06 Aligned_cols=184 Identities=13% Similarity=0.199 Sum_probs=125.8
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
-.+|.+...+.+|++|.-+...+=.+++ ..+-.|||.+ +-..+..... +..+++|||-+-.+...+..-.++++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss--DG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS--DGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc--CCeEEEEEeecchhhhheeccCCCCC
Confidence 4567778899999999999665544444 7777888876 5555555555 78999999998777765553333322
Q ss_pred c-cchhhhhcceee-----EeecCCeeeEEEcccceE--EEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEecccc
Q 016020 275 K-VDFIEQFNEKLL-----VKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 275 ~-i~FiE~~~ekLL-----IKQed~~L~I~Dv~~~ki--~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~ge 344 (396)
+ +.|=---++.|+ -.-.+..+++||+|+.+- .....+|.+.....-|.| +.+|.||-|- |.|-++|+.++
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 2 221110011111 112578899999999654 457889999999999998 5677888776 99999999995
Q ss_pred eeeeeccccc-------------cCCCCCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 345 LVTSFEDHLL-------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 345 L~t~fedh~l-------------~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
.=|||++ |+.+=+.-..-+|-++++-|==|+..++.-|.|
T Consensus 199 ---~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 ---NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred ---cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 3344443 555455555667888888888888777655544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.033 Score=56.99 Aligned_cols=119 Identities=11% Similarity=0.204 Sum_probs=94.4
Q ss_pred CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec---c
Q 016020 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---R 310 (396)
Q Consensus 237 g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~---~ 310 (396)
|.-+|+..+. -.=++|+|+.+|+..+.+. +|+.. |.|-+.--++||..++|++|++|||.+..|+.|- .
T Consensus 104 ~~p~la~~G~--~GvIrVid~~~~~~~~~~~---ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 104 GNPFLAAGGY--LGVIRVIDVVSGQCSKNYR---GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred CCeeEEeecc--eeEEEEEecchhhhcccee---ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 4455555555 4567899999999999887 55544 7888877889999999999999999999999964 5
Q ss_pred cccCCCceEEEeecCeEEEEEEc--CeEEEEeccc-ceeeeeccccccCCCCCC
Q 016020 311 TEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRG-ELVTSFEDHLLWHPDCNT 361 (396)
Q Consensus 311 t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~g-eL~t~fedh~l~~~~c~~ 361 (396)
+|-+..-+.=|..++. ++..+- -++++|++.- +...-+|....|.|+-.+
T Consensus 179 gHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred cccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 6777777777888888 433333 5999999997 788889999999888444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.061 Score=53.86 Aligned_cols=215 Identities=14% Similarity=0.119 Sum_probs=145.1
Q ss_pred hccccceeeeccccceEEEec-CCC-CceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee
Q 016020 105 AHSGVCAAFSRETNRRICFLN-VSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN-~s~-~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~ 182 (396)
+-.+...+|+.+-.++.=.+| .+. +.|..=.+.-+.++-+.++|. | +.+.+=++|.||. .=+.
T Consensus 39 s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---d-------k~ir~wd~r~~k~-----~~~i 103 (313)
T KOG1407|consen 39 SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---D-------KTIRIWDIRSGKC-----TARI 103 (313)
T ss_pred ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---C-------ceEEEEEeccCcE-----EEEe
Confidence 333444444444333333222 222 357777788888888877552 2 2444557777775 1111
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
+.-+--=++-..+ .|.-++....|..+.+.|.++|+.+-+-.- -++.|+-+. ++-|+++..+- ..+.||+--.=
T Consensus 104 ~~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl---G~v~ILsypsL 179 (313)
T KOG1407|consen 104 ETKGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL---GCVEILSYPSL 179 (313)
T ss_pred eccCcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC---ceEEEEecccc
Confidence 1111111233333 577888888899999999999986544433 566677776 44444444443 66788888777
Q ss_pred cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 261 TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
|++.+++ +|+.. |.|-+ +|.|+.++.-|....+||+--=-|.++-.-..-+.+..=|+|++++.-+.|. ..|
T Consensus 180 kpv~si~---AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 180 KPVQSIK---AHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccccccc---cCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 7888877 66666 88888 9999999999999999999876666666677788899999999999998888 688
Q ss_pred EEEecc
Q 016020 337 AVWNFR 342 (396)
Q Consensus 337 ~iWd~~ 342 (396)
+|=++.
T Consensus 256 DIA~ve 261 (313)
T KOG1407|consen 256 DIAEVE 261 (313)
T ss_pred EeEecc
Confidence 776554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.1 Score=44.57 Aligned_cols=133 Identities=19% Similarity=0.262 Sum_probs=80.8
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc--CCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR--NKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~--sk~ 275 (396)
|.+.+. ..++.+.-.|+++.+.+.+-.-.....+.+.+|.+.+... .-.+..++.+||+.+-....+..+ +.+
T Consensus 257 ~~vy~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 257 GVVYAL-AYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CEEEEE-EcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcC----CCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 344432 3456677777777776665443333345566666655432 345888899999887654321111 112
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC-CCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~-~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
+ ..+++|++..+++.|.++|..+++++--.+.... ..+. -...++.||+.-.+|++-..+
T Consensus 332 ~----v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~-P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 332 V----LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE-PVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred E----EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC-CEEECCEEEEEeCCceEEEEe
Confidence 2 2589999999999999999999998753322110 1111 123578899988888765443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.83 Score=45.74 Aligned_cols=151 Identities=10% Similarity=0.127 Sum_probs=91.6
Q ss_pred eEEeeCCCCcEEEeecC-CC--eEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQ-DS--IYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~-d~--~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.+.|.+ +|+-+++... ++ .+.+||+.+.+ +..+++ ....+..+||+ -.+++........-+-++++.+|+..
T Consensus 247 ~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 247 APAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CeEECC-CCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 467777 7776665433 33 57777998865 345554 23556788864 44444433333445667788888753
Q ss_pred EEEEeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc----CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----gti 336 (396)
. +...-.....+.|.+ .+.+|+.-.. ++ .|-++|+.+++...+..+. ......|.++++.++-.++ ..+
T Consensus 325 ~-lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 325 R-VTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred E-eecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEE
Confidence 3 221111223356666 7888876543 32 5888999999887764432 2234478998887655554 357
Q ss_pred EEEeccccee
Q 016020 337 AVWNFRGELV 346 (396)
Q Consensus 337 ~iWd~~geL~ 346 (396)
.+++++|...
T Consensus 401 ~~~~~~g~~~ 410 (430)
T PRK00178 401 MLVSINGRVR 410 (430)
T ss_pred EEEECCCCce
Confidence 7888888533
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.35 Score=49.68 Aligned_cols=147 Identities=10% Similarity=0.130 Sum_probs=86.6
Q ss_pred EeeCCCCcEEEeecCC---CeEEEEeccCceE--EEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 192 EFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d---~~YrVwdlknYs~--lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.|++ +|+.|+|.+.+ ..+.+||+.+.+. +-... ......+|||+ -.|++.....+..-+-++++++|+...-
T Consensus 224 ~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 224 AWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI 301 (448)
T ss_pred eECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC
Confidence 4566 78888876542 3577889887763 32222 23457899964 4555555555556688889998875432
Q ss_pred EEeecccCCccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--Ce--EEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RT--VAV 338 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gt--i~i 338 (396)
.... .....+.|.+ .+.+|++..+ ++ .|-++|+.+++..++.... .....-.|.++++.++..+. +. |-+
T Consensus 302 t~~~-~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 302 TRHR-AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred ccCC-CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEE
Confidence 2211 1223467776 8888887664 33 3555688888877753211 12223367888765433332 44 444
Q ss_pred Eeccc
Q 016020 339 WNFRG 343 (396)
Q Consensus 339 Wd~~g 343 (396)
+|+++
T Consensus 379 ~dl~~ 383 (448)
T PRK04792 379 QDLET 383 (448)
T ss_pred EECCC
Confidence 67766
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.41 Score=46.93 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=79.5
Q ss_pred CeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEec-CCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNR-SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~-~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
..+.++|..+. ....+.+ ..+...++||+--.|++.. ..+.--+.+|++.+|+......+. .....+.|.+ .++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~sp-Dg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSP-DGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECC-CCC
Confidence 34556666433 2344444 4588889997654444433 333456899999999765433311 1222367777 788
Q ss_pred eeeEe-ecC--CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEeccc
Q 016020 285 KLLVK-QEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRG 343 (396)
Q Consensus 285 kLLIK-Qed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~g 343 (396)
.|++. ..+ ..|.+||+.+++...+.... .......|.++++.++..++ + .|-+||+.+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 88754 333 35888999998877764322 22334567888876554444 3 466778776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.38 Score=48.84 Aligned_cols=235 Identities=18% Similarity=0.182 Sum_probs=162.2
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEE
Q 016020 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (396)
Q Consensus 123 ~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt 202 (396)
.|+..|.+-|-+|=|...+.-|++.| =+ .+|.-+.++...+ ++++.-+-||-... |=| ..-+.
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD-gslrlYdv~~~~l-~~~~~~~~plL~c~---------F~d--~~~~~ 69 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD-GSLRLYDVPANSL-KLKFKHGAPLLDCA---------FAD--ESTIV 69 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc-CcEEEEeccchhh-hhheecCCceeeee---------ccC--CceEE
Confidence 57888899999998884444444433 22 5677777776644 45666677766542 222 33445
Q ss_pred eecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh
Q 016020 203 YSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (396)
Q Consensus 203 ~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~ 281 (396)
....|+++|+.|+.+..-..--++ +.|+.|--+++.-.++..+= +-.+|+||--+......+. ..++|-=+-+
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsW--D~~ik~wD~R~~~~~~~~d----~~kkVy~~~v 143 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSW--DKTIKFWDPRNKVVVGTFD----QGKKVYCMDV 143 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEccc--CccEEEEeccccccccccc----cCceEEEEec
Confidence 567899999999999997777776 89999999988888888877 6778889877633333232 3445555667
Q ss_pred hcceeeEeecCCeeeEEEcccceEEEec--ccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc-----eeeeecccc
Q 016020 282 FNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE-----LVTSFEDHL 353 (396)
Q Consensus 282 ~~ekLLIKQed~~L~I~Dv~~~ki~~v~--~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge-----L~t~fedh~ 353 (396)
-++.|+++-.|..++|||+++-+.-... ..-.++.++.-++|+++=|+.-|= |-|.+=.++.. .+-.|-=|-
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 8999999999999999999996655432 234678899999998887776664 76666555542 444666665
Q ss_pred ccCCC-----CCC-------CcEEEccCCcEEEEeccCC
Q 016020 354 LWHPD-----CNT-------NNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 354 l~~~~-----c~~-------n~~~it~~qd~ii~~~~~~ 380 (396)
+-..+ |++ -.-|.|+.-|=||..-+..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 54433 222 2347888888777765543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.053 Score=59.61 Aligned_cols=189 Identities=19% Similarity=0.253 Sum_probs=125.5
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEecc-CceEEEE-----ec--cCceEEEEEc---CCeEEEEEecCCCeee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYS-----IS--DKHVQEIKIS---PGIMLLIFNRSSSHVP 251 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lys-----Is--~~~VqEIkiS---pg~~Ll~~q~~~~~ip 251 (396)
+-...=||--|+| ..||-+++|..+|+|-|- +-++--| +. +.-|..+++- +|+| +..+ +..
T Consensus 80 d~VtDl~FspF~D---~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil---~s~a--~g~ 151 (1012)
T KOG1445|consen 80 DQVTDLGFSPFAD---ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGIL---ASGA--HGS 151 (1012)
T ss_pred ceeeccCccccch---hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceE---Eecc--Cce
Confidence 4455567778887 678889999999999997 4333221 11 1345566665 4444 3333 467
Q ss_pred eEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccc-cCCCceEEEeecCe
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTE-FMTPSAFIFLYENQ 326 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~-~~~PsAFiFly~~q 326 (396)
++||||.|++.+.++. .|.-. .+..| +|..|...-+|.+|+|||-+.+ +-+.+..+| .|--+-.+|.-+-+
T Consensus 152 v~i~D~stqk~~~el~---~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELS---GHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred EEEEEcccCceeeccc---CCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence 8999999999999988 77666 45677 8999999999999999999873 333332333 44445555654422
Q ss_pred E-----EEEEEcCeEEEEeccc--ceeeeec-----cccccCCCCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 327 L-----FLTFRNRTVAVWNFRG--ELVTSFE-----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 327 L-----FLTfs~gti~iWd~~g--eL~t~fe-----dh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
- |=+-+-+.|.+||++- .-+.++| +-+..+.+.-++-+|++..-|--+-|..-...+
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 2 6677779999999985 3333332 344556667778888887766655555444333
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.07 Score=56.03 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=113.2
Q ss_pred CcceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCc------e--EEEEecc-CceEEEEEcCCeEEEEEe
Q 016020 177 FALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNY------T--MLYSISD-KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 177 ~~LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknY------s--~lysIs~-~~VqEIkiSpg~~Ll~~q 244 (396)
+||.+++.+.|-|- ++|.+ ||++|++...|-..+||.|.-- + .+..=.. -+|-++.+--|--.+.+.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 67888888888886 59999 8999999999999999998532 2 2222222 567777777776666666
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCc--cchhhhhcceeeEeecCCeeeEEEcccceE-E-EecccccCCCceEE
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVKQENENLQILDVRNAEL-M-EVSRTEFMTPSAFI 320 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~--i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki-~-~v~~t~~~~PsAFi 320 (396)
.. .-.+.+-|||+.+-++-+++-=.+..- ++-.+. ..-+++-..++.+.|||++.+.- + -+. -.+.|++|+
T Consensus 124 ~~--~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~--~AN~~~~F~ 198 (609)
T KOG4227|consen 124 ER--WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVL--PANSGKNFY 198 (609)
T ss_pred CC--cceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceee--ecCCCccce
Confidence 55 667788899999999988832111111 444453 45666777999999999998661 1 122 234677775
Q ss_pred ---Eee-cCeEEEEEEc-CeEEEEeccc
Q 016020 321 ---FLY-ENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 321 ---Fly-~~qLFLTfs~-gti~iWd~~g 343 (396)
|.| +-.|.+|-+. +-+-+||.+-
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeecc
Confidence 555 4567777777 8999999876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.9 Score=42.52 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=101.8
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccC-ceEEEEe---------------ccCceEEEEEcCC-eEEEEEecCCC
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---------------SDKHVQEIKISPG-IMLLIFNRSSS 248 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn-Ys~lysI---------------s~~~VqEIkiSpg-~~Ll~~q~~~~ 248 (396)
..|-++.+|+....+++++-.++++-||++.. .+.--.. ...+.+++.++|+ -.|++..--.
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~- 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA- 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-
Confidence 57899999997777888888899999999987 4432221 2367889999976 4444433332
Q ss_pred eeeeEEEEeecCcE-EEE-EEeecccCCc---cchhhhhcceeeEee-cCCeeeEEEcc--cceEEE-----eccc---c
Q 016020 249 HVPLKILSIEDGTV-LKV-FYHLLHRNKK---VDFIEQFNEKLLVKQ-ENENLQILDVR--NAELME-----VSRT---E 312 (396)
Q Consensus 249 ~iplkIl~IetG~~-l~s-~~~~L~~sk~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~--~~ki~~-----v~~t---~ 312 (396)
=-+.++++.+++. |.. -...++...- +.|-+ .+.++++-. .++.|.+|++. ++++.. +.++ .
T Consensus 166 -D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 166 -DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp -TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred -CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 2578888877652 332 1222343332 88888 788886665 56669999999 555443 2211 2
Q ss_pred cCCCceEEEeecCe-EEEEEEc-CeEEEEeccc
Q 016020 313 FMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 313 ~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~g 343 (396)
...|++..+.++++ ||++-+. ++|.++++++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 23788999998876 5777766 8999999954
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.2 Score=51.52 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=77.8
Q ss_pred EEeccCceE-EEEeccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeE-
Q 016020 212 VFDLKNYTM-LYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV- 288 (396)
Q Consensus 212 VwdlknYs~-lysIs~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLI- 288 (396)
++|..+... ...=+.+.+...+|||+- .|+.....+...-|.++++.+|+...-... -.....+.|.+ .|++|++
T Consensus 202 i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g~~~~~~wSP-DG~~La~~ 279 (448)
T PRK04792 202 IADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PGINGAPRFSP-DGKKLALV 279 (448)
T ss_pred EEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CCCcCCeeECC-CCCEEEEE
Confidence 346555432 111223678889999764 344433334455688899999986443221 12334578887 8888876
Q ss_pred eecCCe--eeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEE--Eeccc
Q 016020 289 KQENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAV--WNFRG 343 (396)
Q Consensus 289 KQed~~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~i--Wd~~g 343 (396)
..++++ |-++|+.+++...+.... .......|.++++.++..++ |...| ||+.+
T Consensus 280 ~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 280 LSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred EeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 445554 777799999888765432 34456678998875444444 44455 46654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.067 Score=59.42 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=99.6
Q ss_pred cCCCeEEEEeccCceEEEEe--ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC---Cccchh
Q 016020 205 AQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN---KKVDFI 279 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysI--s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s---k~i~Fi 279 (396)
+..-.+-+||.+--++-|-+ +-+.+..++||+.=-.++...-.-.-.+|+|+++.-....+|. -|. --+.|.
T Consensus 55 pAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfv---dHKY~vtcvaFs 131 (1080)
T KOG1408|consen 55 PAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFV---DHKYNVTCVAFS 131 (1080)
T ss_pred ccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhh---hccccceeeeec
Confidence 45667788998877755444 4599999999976666666654334558999999987777766 231 128888
Q ss_pred hhhcceeeE--eecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccce
Q 016020 280 EQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL 345 (396)
Q Consensus 280 E~~~ekLLI--KQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~geL 345 (396)
+ -+.||.. -|.|-.+++||-+-+-- --++-..--.+|.-|.-++.+|+|.-++-|++|.++++.
T Consensus 132 p-~~kyvvSVGsQHDMIVnv~dWr~N~~-~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~ 197 (1080)
T KOG1408|consen 132 P-GNKYVVSVGSQHDMIVNVNDWRVNSS-GASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS 197 (1080)
T ss_pred C-CCcEEEeeccccceEEEhhhhhhccc-ccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccc
Confidence 8 7888773 57888899997654321 122333444689999999999999999999999999853
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.3 Score=44.76 Aligned_cols=147 Identities=14% Similarity=0.226 Sum_probs=114.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC--ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn--Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|-+.| -|+.||.-+=|++.-+|--.+ ++++=.|.+ .+|+.|.+|+ |-.|+.-.+. ..+=||-+.-+.+.--
T Consensus 67 vAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD---KSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD---KSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC---CeEEEEEecCCCcEEE
Confidence 44555 799999999999999998774 457788887 8999999994 5555555555 5667777765554443
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc---cceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR---NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAV 338 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~---~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~i 338 (396)
.-.+.+|+-+ +.|-+ ..+.|..-.=|..+++|+=- .=++..++.++..+.-+..|-+.++-+++-++ ++++|
T Consensus 143 ~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 4445577766 56655 66889999999999999877 34678888999999999999999999898888 99999
Q ss_pred Eecc
Q 016020 339 WNFR 342 (396)
Q Consensus 339 Wd~~ 342 (396)
|=..
T Consensus 222 w~~~ 225 (312)
T KOG0645|consen 222 WRLY 225 (312)
T ss_pred eeec
Confidence 9855
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.024 Score=62.73 Aligned_cols=174 Identities=14% Similarity=0.282 Sum_probs=120.1
Q ss_pred ceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccC---ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeee
Q 016020 179 LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVP 251 (396)
Q Consensus 179 LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn---Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~ip 251 (396)
+|.+ --.+|- -|++ --||-.+..+.+-||||-- -++||.+.. ..|..+-|++ .-.+|++.+- +.-
T Consensus 86 ~~~S~~DVkW~---~~~~---NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ--Dg~ 157 (839)
T KOG0269|consen 86 KFYSAADVKWG---QLYS---NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ--DGT 157 (839)
T ss_pred eeeehhhcccc---cchh---hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC--Cce
Confidence 4544 445665 4454 2455567788899999987 567676665 5677777773 3344566665 788
Q ss_pred eEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeEEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
+|+||+-..+-.-++.--=-.-.+|.|++-.+.+-...-|++.||.|||+- .++.....+|.-+..+.=..|++++.-|
T Consensus 158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred EEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee
Confidence 999999876655555421122234999999999999999999999999998 4555577788888888878884444433
Q ss_pred E-EcCeEEEEecccc---eeeeec-----cccccCCCCC
Q 016020 331 F-RNRTVAVWNFRGE---LVTSFE-----DHLLWHPDCN 360 (396)
Q Consensus 331 f-s~gti~iWd~~ge---L~t~fe-----dh~l~~~~c~ 360 (396)
= +|+.|+|||..+. .+-.++ ..+-|-|.|.
T Consensus 238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 2 4589999999962 222222 4566777766
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.046 Score=57.68 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=122.0
Q ss_pred EEeeCCCC-cEEEeecCCCeEEEEec----cCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc--
Q 016020 191 VEFDDVNG-KVLTYSAQDSIYKVFDL----KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT-- 261 (396)
Q Consensus 191 VEFDd~Ng-kIlt~~a~d~~YrVwdl----knYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~-- 261 (396)
++|=+.-- +++|...--|.+-+||+ +++.-+|-... .-|..|+++|----.++. ...+..+.+-|++++.
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-sSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-SSYDGTIRLQDFEGNISE 270 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-eccCceeeeeeecchhhH
Confidence 45655444 89999999999999999 45555555543 679999999654332222 2245788888888864
Q ss_pred EEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE-EEecccccCCCceEEEeecC-eEEEEEEc-CeEEE
Q 016020 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAV 338 (396)
Q Consensus 262 ~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki-~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gti~i 338 (396)
++++++-.=.-=..+||.. .+..+|+.+.=+++..||+++.+- ++-.+-|.+......+.|-. +++.|.+. +|.+|
T Consensus 271 ~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI 349 (498)
T ss_pred HHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence 3344420000112378887 566677777766999999999666 77777888888888888854 55667776 89999
Q ss_pred Eeccc-ceeee-----ecccccc--CCCCCCCcEEEccCCcEEEEeccC
Q 016020 339 WNFRG-ELVTS-----FEDHLLW--HPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 339 Wd~~g-eL~t~-----fedh~l~--~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
||++- .-+.+ ++-..+- +-+.|++--.+|..||==|--..+
T Consensus 350 WD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 350 WDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred eehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 99987 33332 2222221 222455444778888755544333
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.088 Score=57.18 Aligned_cols=186 Identities=18% Similarity=0.269 Sum_probs=129.7
Q ss_pred EEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEE
Q 016020 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (396)
Q Consensus 133 rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrV 212 (396)
|.+-||+-+-.|..| .++ .-.+-++ |.+|.+-.+ |++.+ .-=--|+-++.||=+ +....++.+-+
T Consensus 137 RDm~y~~~scDly~~--gsg-----~evYRlN---LEqGrfL~P---~~~~~-~~lN~v~in~~hgLl-a~Gt~~g~VEf 201 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLV--GSG-----SEVYRLN---LEQGRFLNP---FETDS-GELNVVSINEEHGLL-ACGTEDGVVEF 201 (703)
T ss_pred ccccccCCCccEEEe--ecC-----cceEEEE---ccccccccc---ccccc-ccceeeeecCccceE-EecccCceEEE
Confidence 667788887777773 322 2223332 233332211 33321 001247788888854 44666999999
Q ss_pred EeccCceEEEEecc-Cc------------eEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEee--cccCCcc
Q 016020 213 FDLKNYTMLYSISD-KH------------VQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LHRNKKV 276 (396)
Q Consensus 213 wdlknYs~lysIs~-~~------------VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~--L~~sk~i 276 (396)
||+++=+..-++.. .+ |..+++++ |+.+.+-..+ ..+-|+|+-+.+++..-.|. ++. +.+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~---G~v~iyDLRa~~pl~~kdh~~e~pi-~~l 277 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST---GSVLIYDLRASKPLLVKDHGYELPI-KKL 277 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC---CcEEEEEcccCCceeecccCCccce-eee
Confidence 99999997766665 33 99999998 8888777666 66779999999999866532 222 448
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+|+....+.-++--+...|+|||=-+||.+-. -+|. ..--|-|++++.+||+.-+ ..+..|
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~--~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS--DLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cccccCCCceEEecchHHhhhcccccCCceeeccccC--CcCceeeecCCceEEEecCCCcceeE
Confidence 88888888888889999999999999998863 3333 2677889999999999877 455444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.03 Score=58.98 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred hhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEcCeEEEEeccc-ceeeeecccc
Q 016020 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 281 ~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~gti~iWd~~g-eL~t~fedh~ 353 (396)
.+|.||+.+--|.-++|||..|.+=+++...|-...+..-|-+ +++||.+--|++|++|+.+- ..+.++=+|.
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 3799999999999999999999999999999999999999966 78999999999999999998 5666665553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=58.66 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=112.3
Q ss_pred EEEEcCCeEEEEEecCCCeeeeEEEEeecCc-E--------EEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEE
Q 016020 231 EIKISPGIMLLIFNRSSSHVPLKILSIEDGT-V--------LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQIL 298 (396)
Q Consensus 231 EIkiSpg~~Ll~~q~~~~~iplkIl~IetG~-~--------l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~ 298 (396)
.|-++|+-..+...+...+-...||+.+-=- + -+.+.....|... +.|.. .|+||.++.||.-+.||
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEe
Confidence 3448888888888876555556688876511 1 1112222233333 55666 99999999999999999
Q ss_pred Eccc-------c-----------eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC
Q 016020 299 DVRN-------A-----------ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD 358 (396)
Q Consensus 299 Dv~~-------~-----------ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~ 358 (396)
.-.. + +.+.++++|.+...-.-..|++.++++.+. ++|-|||..- ++++.+++|...+--
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKG 176 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKG 176 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccc
Confidence 9882 1 356688999999999999999999999998 9999999998 999999999987654
Q ss_pred ---CCCCcEEEccCCcEEEEecc
Q 016020 359 ---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 359 ---c~~n~~~it~~qd~ii~~~~ 378 (396)
=|.+++|-|-.-|=.|=+.+
T Consensus 177 vs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 177 VSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred eEECCccCeeeeecCCceEEEEE
Confidence 68899998888887776666
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.035 Score=56.26 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=78.9
Q ss_pred cCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 205 AQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
.+|++.+.||++++++.|+|.+-+.|- ...+||.+----
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~-----------------------------------------vrdlDfNpnkq~ 228 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQR-----------------------------------------VRDLDFNPNKQH 228 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcce-----------------------------------------eeeccCCCCceE
Confidence 579999999999999999999655432 234566665555
Q ss_pred eeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEeccc
Q 016020 285 KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~g 343 (396)
+|...-+|+-++|||.++ +.-...+.+|.-+.-+..|.+ .-||.||-++ -.|-+|...+
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 667777999999999998 455667889999999999988 6799999988 6888887765
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=53.46 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=119.0
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC------
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG------ 260 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG------ 260 (396)
.|.+.+-.-+.+.+.|..+|+|+.++..++-.+-+ .+|..|-+|+.---+++-+. +-.||+|+|...
T Consensus 142 k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm--Dhslk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 142 KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM--DHSLKLWRLNVKEFKNKL 219 (385)
T ss_pred hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC--cceEEEEecChhHHhhhh
Confidence 46665666788889999999999999999998877 89999999966555556555 678999999831
Q ss_pred -------------------cEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc--ceEEEecccccCCCceE
Q 016020 261 -------------------TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAF 319 (396)
Q Consensus 261 -------------------~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~--~ki~~v~~t~~~~PsAF 319 (396)
+....|.-.=.|.++||=+.-||+++|.|.=++.|..|--.. ..+-++++.+..+.-+-
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~ 299 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG 299 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeee
Confidence 111122111245578888888999999999888888886631 11223556665555555
Q ss_pred EEeecC-------------eEEEEEEc--CeEEEEeccc-ce--eeeeccccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 320 IFLYEN-------------QLFLTFRN--RTVAVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 320 iFly~~-------------qLFLTfs~--gti~iWd~~g-eL--~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.|-|.+ |.+|+.-+ |+|-+||++. +- -|++--+..- -.--..=.|.|--+++.-|...
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~---~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG---STVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred EeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc---ceeeeeeecccCcEEEEEeCCC
Confidence 555444 22333334 8999999988 32 2222221111 1111223466666777666543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.071 Score=54.73 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=118.8
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCcc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i 276 (396)
|+..+..|++++ -++|-+-|.|.. +| +-+-...+++..++ ..++|+|-.||+.+..|+..=+..+-|
T Consensus 10 n~~~~~~S~~~~------~~~~~Lk~~~q~-~~---~~~~e~~vav~lSn---gsv~lyd~~tg~~l~~fk~~~~~~N~v 76 (376)
T KOG1188|consen 10 NMVTASSSVRVS------NEDFCLKYDIQE-QV---KDGFETAVAVSLSN---GSVRLYDKGTGQLLEEFKGPPATTNGV 76 (376)
T ss_pred hhhhhccccccc------cccceeeccchh-hh---ccCcceeEEEEecC---CeEEEEeccchhhhheecCCCCcccce
Confidence 355666666654 355556665543 11 11111334444444 568999999999999999766777789
Q ss_pred chhhh-hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC---eE-----EEEEEcCeEEEEeccc--ce
Q 016020 277 DFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN---QL-----FLTFRNRTVAVWNFRG--EL 345 (396)
Q Consensus 277 ~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~---qL-----FLTfs~gti~iWd~~g--eL 345 (396)
.|+-- ...-+++..-|+.++.||+|+..-.-+-.....+|.+|+=+.-| ++ =++=++-.+-+||.+. ++
T Consensus 77 rf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 77 RFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred EEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch
Confidence 99875 56678899999999999999976655545555668888887643 33 3455667899999999 45
Q ss_pred ee-eeccccccCCC----CCCCcEEEccCCcEEEEeccCCCC
Q 016020 346 VT-SFEDHLLWHPD----CNTNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 346 ~t-~fedh~l~~~~----c~~n~~~it~~qd~ii~~~~~~~~ 382 (396)
++ -+|-|.=.+-- ..+.++-+|+.-|=+|+-..-..+
T Consensus 157 l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 157 LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 55 45555433211 678889999999988888766654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.4 Score=51.76 Aligned_cols=135 Identities=19% Similarity=0.412 Sum_probs=93.7
Q ss_pred CceEEEEecc-CceEEEEEcCCe--EEEEEecCCCeeeeE--EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeec
Q 016020 217 NYTMLYSISD-KHVQEIKISPGI--MLLIFNRSSSHVPLK--ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE 291 (396)
Q Consensus 217 nYs~lysIs~-~~VqEIkiSpg~--~Ll~~q~~~~~iplk--Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQe 291 (396)
+-+..+.+.. --|++++|||.. +..++. .||.| |||+ .|.++.+|- -++-+.+-|.+ +|.+|++.-.
T Consensus 260 g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG----fMPAkvtifnl-r~~~v~df~--egpRN~~~fnp-~g~ii~lAGF 331 (566)
T KOG2315|consen 260 GESVSVPLLKEGPVHDVTWSPSGREFAVVYG----FMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFNP-HGNIILLAGF 331 (566)
T ss_pred CceEEEecCCCCCceEEEECCCCCEEEEEEe----cccceEEEEcC-CCCEeEeCC--CCCccceEECC-CCCEEEEeec
Confidence 4456666664 458999999888 666654 35554 4443 355555443 34445577777 9999999998
Q ss_pred CC---eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-------cCeEEEEecccceee--eecc---ccccC
Q 016020 292 NE---NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVT--SFED---HLLWH 356 (396)
Q Consensus 292 d~---~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-------~gti~iWd~~geL~t--~fed---h~l~~ 356 (396)
|. .+-|||+.+.|++- .-.....+-|=+.++|+.|||.. |+.++||+..|.++- -|+. .+-|-
T Consensus 332 GNL~G~mEvwDv~n~K~i~--~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~ 409 (566)
T KOG2315|consen 332 GNLPGDMEVWDVPNRKLIA--KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWR 409 (566)
T ss_pred CCCCCceEEEeccchhhcc--ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeee
Confidence 74 67799999977763 33444556778899999999976 478999999998654 7776 33344
Q ss_pred CCCCCC
Q 016020 357 PDCNTN 362 (396)
Q Consensus 357 ~~c~~n 362 (396)
| |+++
T Consensus 410 P-~~~~ 414 (566)
T KOG2315|consen 410 P-FNDK 414 (566)
T ss_pred e-cCCc
Confidence 3 5554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.016 Score=65.76 Aligned_cols=153 Identities=11% Similarity=0.159 Sum_probs=113.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe----ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI----s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+||..--|.+||+.+.||.+-||||.+-+.=|+. .-++|..+.|--.+.= ++..++......|||+-..+.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccc
Confidence 6999988999999999999999999997755554 2377777777633322 2233444556666666554322200
Q ss_pred ----------------------------------------------EeecccCCc---cchhhhhcceeeEeecCCeeeE
Q 016020 267 ----------------------------------------------YHLLHRNKK---VDFIEQFNEKLLVKQENENLQI 297 (396)
Q Consensus 267 ----------------------------------------------~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I 297 (396)
+.+-+|++- ++.-.++.++||.--+|..+-+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE
Confidence 011134333 6777788899999999999999
Q ss_pred EEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecccc
Q 016020 298 LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGE 344 (396)
Q Consensus 298 ~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ge 344 (396)
||..|+|+.--.++..+|-.-..|.+.+---++.++ |.|.||.++|-
T Consensus 281 wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 999999999988889999999999998886556555 99999999994
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.8 Score=46.44 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|+-+-|.+ .||-+--...|+.+.|+|+.+.+.+-+|.- .+-..|.+|+ |-.+++.....+ -+.|+|.+|.+.++.
T Consensus 39 h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~--~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 39 HAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG--TVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT--EEEEEETTT--EEEE
T ss_pred eeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC--ceeEeccccccceee
Confidence 44556666 677555556799999999999999999987 8899999995 566666654433 577899999999997
Q ss_pred EEee-cc---cCCc---cchhhhhcceeeEeecCCeeeEEEcccce-EEEecccccCCCceEEEeecCeEEEEEEc--Ce
Q 016020 266 FYHL-LH---RNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRN--RT 335 (396)
Q Consensus 266 ~~~~-L~---~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-i~~v~~t~~~~PsAFiFly~~qLFLTfs~--gt 335 (396)
+.-. ++ +..+ |=....-.++++---|...+-+.|..+.+ +..........|.-+.|.+++++|++-.+ +.
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence 6511 00 0111 21222222334333344556666765532 22122233456778889999998877544 89
Q ss_pred EEEEeccc-ceeeeecc
Q 016020 336 VAVWNFRG-ELVTSFED 351 (396)
Q Consensus 336 i~iWd~~g-eL~t~fed 351 (396)
|.++|... .++..++-
T Consensus 196 i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEEEETTTTEEEEEEE-
T ss_pred eEEEeeccceEEEEeec
Confidence 99999988 47776654
|
... |
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=55.50 Aligned_cols=148 Identities=11% Similarity=0.234 Sum_probs=113.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
|-==+..||-++++..-+++.||||-++-+.+-.|-+ +||..+.++++--=+++. .++..+++||+---.++.++.
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~--sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA--SSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec--CCCceEEeeeccccceeeeEE
Confidence 4333556788999999999999999999999999999 999999999766544544 448999999999999999865
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEee--cCeEEEEEEcCeEEEEec
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLY--ENQLFLTFRNRTVAVWNF 341 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly--~~qLFLTfs~gti~iWd~ 341 (396)
.|..- ++ .+..=.+++.+-.+++|-.=|+++ .+++-+ =.-..|-.-+-+. +++..+|-.+++|+=|-.
T Consensus 253 ---vH~e~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli--ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 253 ---VHKEGVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI--CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred ---eccCceEEEe-eCCCcceEEecCCCCcEEecccCCchhheEe--ecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 33232 33 223556899999999999999999 554443 2223444445555 778899999999999998
Q ss_pred ccce
Q 016020 342 RGEL 345 (396)
Q Consensus 342 ~geL 345 (396)
.+..
T Consensus 327 ~~~~ 330 (735)
T KOG0308|consen 327 EPDI 330 (735)
T ss_pred cccc
Confidence 8864
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.071 Score=55.11 Aligned_cols=113 Identities=11% Similarity=0.256 Sum_probs=82.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEecc------CceEEEEecc------------CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISD------------KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlk------nYs~lysIs~------------~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
-||-+..--+..||+..|++|+=||+ ..+.|++-+. --|.+||+|++=-.|+ . ..++++
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-s--RDyltv 295 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-S--RDYLTV 295 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-E--ecccee
Confidence 47888888999999999999999999 5667776554 2468999997644332 2 348999
Q ss_pred EEEEe-ecCcEEEEEEe-eccc--------------CCccchhhhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 253 KILSI-EDGTVLKVFYH-LLHR--------------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 253 kIl~I-etG~~l~s~~~-~L~~--------------sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
||||+ ++.+++..... ---+ ..++.+.- .+.+++.+.-+..++++|+..|...-
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCccee
Confidence 99999 88888876541 0001 12255554 56699999999999999977765443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.47 Score=48.56 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=100.8
Q ss_pred cccceEEEeeccchhhhhhccccceeeecc-ccceEEEecC-C-CCceEEEEeeecCCCeEEEEEeEecCCCceeeeEee
Q 016020 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRE-TNRRICFLNV-S-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (396)
Q Consensus 87 ~RS~V~EIv~a~dii~~L~~sG~c~af~~~-t~~~ic~lN~-s-~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~ 163 (396)
-+++|+.|-..+|-|++++.+-+ -+|.=- +=+.+|.+-. + |.- .=++-.. -|.+++. |-+.||-.+
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~I-~VytF~~n~k~l~~~et~~NPkG-lC~~~~~-~~k~~La--------fPg~k~Gqv 161 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENKI-YVYTFPDNPKLLHVIETRSNPKG-LCSLCPT-SNKSLLA--------FPGFKTGQV 161 (346)
T ss_pred eccceeeEEEcCCeEEEEecCeE-EEEEcCCChhheeeeecccCCCc-eEeecCC-CCceEEE--------cCCCccceE
Confidence 47899999999888888777644 444322 2233332211 1 111 1222222 2344444 567888888
Q ss_pred ehhhhhhCCCCCCCcc------eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEE
Q 016020 164 KIEYIRRGKPDSGFAL------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIK 233 (396)
Q Consensus 164 ~~~~i~~gk~~~~~~L------F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIk 233 (396)
-+.+|..-++++.... -....|..+| -++.|+|...-.+|+||-.+.+.|+++-- -++.+|.
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G--------t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQG--------TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCc--------cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 8888877666522211 1124555554 24555555566799999999999999965 8999999
Q ss_pred EcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 234 ISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 234 iSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
+||+..+|.-.+. ...++||++++-+
T Consensus 234 FSp~~s~LavsSd--KgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 234 FSPNSSWLAVSSD--KGTLHIFSLRDTE 259 (346)
T ss_pred eCCCccEEEEEcC--CCeEEEEEeecCC
Confidence 9999988888887 5778999999854
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.7 Score=43.37 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=130.9
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCC
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~ 187 (396)
=.|.||++- |++|.. .|+|.-|+-+=+|- ++ |.++- . .-...|-...++.
T Consensus 92 iyc~~ws~~-geliat--gsndk~ik~l~fn~--dt----------------~~~~g-------~--dle~nmhdgtird 141 (350)
T KOG0641|consen 92 IYCTAWSPC-GELIAT--GSNDKTIKVLPFNA--DT----------------CNATG-------H--DLEFNMHDGTIRD 141 (350)
T ss_pred EEEEEecCc-cCeEEe--cCCCceEEEEeccc--cc----------------ccccC-------c--ceeeeecCCceee
Confidence 378999865 777654 56666666555553 21 22220 0 0012455667777
Q ss_pred CCeEEeeCCCCcEEEeecC-CCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~-d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-.|.|=-+.-|+||++-.. |-.+-+=|-....-+--+|+ -+|..+--=+|.|+. +-..+..++.||+.---...
T Consensus 142 l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~---sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 142 LAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFA---SGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred eEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEE---ccCCCceEEEEeeeccceee
Confidence 7888877777778776544 33344445555554444444 333333322444431 22235778888876543333
Q ss_pred EEEeecccCC-------ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 265 VFYHLLHRNK-------KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 265 s~~~~L~~sk-------~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
.+.-..|-+. .|. ....|-.|..+|+|++--+||++-+..+.---+|....++..|+|.--.+||-|. .+|
T Consensus 219 ~l~~~~~~~glessavaav~-vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVA-VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred eccCcccCCCcccceeEEEE-ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 3221111111 122 3347889999999999999999999988877788889999999999999999999 799
Q ss_pred EEEecccceee
Q 016020 337 AVWNFRGELVT 347 (396)
Q Consensus 337 ~iWd~~geL~t 347 (396)
++=|++|+|.-
T Consensus 298 kltdlqgdla~ 308 (350)
T KOG0641|consen 298 KLTDLQGDLAH 308 (350)
T ss_pred EEeecccchhh
Confidence 99999998654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.61 Score=47.80 Aligned_cols=149 Identities=13% Similarity=0.237 Sum_probs=95.0
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecC-cEEEEEEeecccCC
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNK 274 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG-~~l~s~~~~L~~sk 274 (396)
-.+|..--+..+|+-||+.+++--.+++ ++|..|.|||..= +|...++ +..+++|||--- .++..+. +|.+|
T Consensus 159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsa--Dg~irlWDiRrasgcf~~lD--~hn~k 234 (397)
T KOG4283|consen 159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSA--DGAIRLWDIRRASGCFRVLD--QHNTK 234 (397)
T ss_pred eEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCC--CceEEEEEeecccceeEEee--cccCc
Confidence 3456566688999999999999999999 9999999998764 4455555 677888888653 3333333 33334
Q ss_pred c----------------cchhhhhcceeeEeecCCeeeEEEcccceEEEe-----cccccCCCceEEEeecCeEEEEEEc
Q 016020 275 K----------------VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-----SRTEFMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 275 ~----------------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-----~~t~~~~PsAFiFly~~qLFLTfs~ 333 (396)
+ +.|-- ++.+|+.+--|..++.|+..+|+-... .+...-.|.--+=.-+...|+-|.+
T Consensus 235 ~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~ 313 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPN 313 (397)
T ss_pred cCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEec
Confidence 3 34444 788999999999999999998764432 1111111111111223444555554
Q ss_pred -CeEEEEeccc-ceeeeeccc
Q 016020 334 -RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 334 -gti~iWd~~g-eL~t~fedh 352 (396)
+++.++++-. +.++.+..|
T Consensus 314 ~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 314 DGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred CCeEEEEEccCceEEEeeecc
Confidence 4555555433 555555555
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.9 Score=40.76 Aligned_cols=266 Identities=14% Similarity=0.142 Sum_probs=145.4
Q ss_pred eeccchhhhhhccccceeeeccccceEEEecCCCCceE----------EEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 95 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evI----------rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
+.+.+.|++...+|.-.|||..||+.+--.+.....-+ -++-+ .++.+++.+ .+ ..|.|--.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~-g~l~ald~- 137 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EK-GQVYALNA- 137 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CC-CEEEEEEC-
Confidence 34688999999999999999999999987766542111 01111 123344321 11 23444322
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc--e-----EEEEEcCC
Q 016020 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH--V-----QEIKISPG 237 (396)
Q Consensus 165 ~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~--V-----qEIkiSpg 237 (396)
.-||+-=.+++ .......|-.. +|+++. ...++.+.-+|.+|.+.+.+..... + ..-.+.+|
T Consensus 138 ----~tG~~~W~~~~-~~~~~ssP~v~-----~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~ 206 (394)
T PRK11138 138 ----EDGEVAWQTKV-AGEALSRPVVS-----DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFG 206 (394)
T ss_pred ----CCCCCcccccC-CCceecCCEEE-----CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECC
Confidence 22332111111 11122233221 245544 3456777888888888888776421 0 11122334
Q ss_pred eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC-------Cccchhh-hhcceeeEeecCCeeeEEEcccceEEEec
Q 016020 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-------KKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVS 309 (396)
Q Consensus 238 ~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s-------k~i~FiE-~~~ekLLIKQed~~L~I~Dv~~~ki~~v~ 309 (396)
.+++ .. . .-.+.-++++||+.+-.+..--+.. ..+.-.+ ..++.+++...++.|..+|+.+++.+=..
T Consensus 207 ~v~~-~~-~--~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 207 GAIV-GG-D--NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred EEEE-Ec-C--CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 4332 22 2 2346678899999877654211110 0011111 24788888888999999999999865432
Q ss_pred ccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeec---cccccCCCCCCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 310 ~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fe---dh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
+.. .+.. .-..++.+|+.-.+|.+-..|... +.+=+.+ +...-.|-..++.+|+......+...=..++.--|
T Consensus 283 ~~~--~~~~-~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 283 EYG--SVND-FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cCC--CccC-cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 211 1222 235678889888889888888854 5433222 22223344568889988777666655344444444
Q ss_pred c
Q 016020 386 M 386 (396)
Q Consensus 386 ~ 386 (396)
.
T Consensus 360 ~ 360 (394)
T PRK11138 360 Q 360 (394)
T ss_pred E
Confidence 3
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.051 Score=56.30 Aligned_cols=149 Identities=15% Similarity=0.257 Sum_probs=108.4
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~ 266 (396)
--+.|.++---||+.++.|..+-++||+.-+.|.++.- -.---|-|+|..+.++...- +--|-.+|+-. .++++..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E--D~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE--DHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc--cccceehhhhhhcccchhh
Confidence 56899999999999999999999999999998887763 33334667786665444333 44444444433 1222221
Q ss_pred EeecccC---CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC-CCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 267 YHLLHRN---KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-TPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 267 ~~~L~~s---k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~-~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
. .|. -+|+|.+ .|.-++.+.-|.+|+||.+..+.-+.|=-|.-| .+-+.-++-|++..++=|| +.|.+|-.
T Consensus 269 ~---dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 269 K---DHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred c---ccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 1 121 2389999 999999999999999999988665554444434 3567778999999999999 99999987
Q ss_pred cc
Q 016020 342 RG 343 (396)
Q Consensus 342 ~g 343 (396)
..
T Consensus 345 ~A 346 (433)
T KOG0268|consen 345 KA 346 (433)
T ss_pred ch
Confidence 76
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.086 Score=55.03 Aligned_cols=111 Identities=11% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEecc--------C--------ceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLK--------N--------YTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlk--------n--------Ys~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
|-|++ +|.+||+.+.++.+.+|=.. + |.-...+.. +++-|+.|+|+.+++++..- +..+
T Consensus 71 vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~--dns~ 147 (434)
T KOG1009|consen 71 VRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV--DNSV 147 (434)
T ss_pred EEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--cceE
Confidence 66888 99999999999999999887 2 443334442 99999999999999999988 7788
Q ss_pred EEEEeecCcEEEEEEeecccCCccch--hhhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKKVDF--IEQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~i~F--iE~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
.+||++.|..+.-+. .|...+|= ....+.|+..+.-|...+++++...+.++
T Consensus 148 ~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 148 RLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred EEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence 999999999999776 55555332 23477888888888777777776655444
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.011 Score=66.13 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=88.6
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecCe
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q 326 (396)
+.-+|||+-||+.++.+.. +|+.++-=+.|-.+.++|.. .|.-||+|=+.++..+-|+++|.-...|.-|.|-.
T Consensus 211 d~lvKiwS~et~~~lAs~r---Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~- 286 (1113)
T KOG0644|consen 211 DRLVKIWSMETARCLASCR---GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA- 286 (1113)
T ss_pred cceeeeeeccchhhhccCC---CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-
Confidence 5778999999999999998 88888888888888888765 77889999999999999999999888888888866
Q ss_pred EEEEEEc-CeEEEEecccc-eeee----------eccccccCCCCCCCcEEEccCCc
Q 016020 327 LFLTFRN-RTVAVWNFRGE-LVTS----------FEDHLLWHPDCNTNNIYITSDQD 371 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~ge-L~t~----------fedh~l~~~~c~~n~~~it~~qd 371 (396)
+-++ ||+++||.+-+ +++. +++.++ .|++..-|.|...|
T Consensus 287 ---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~---~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 287 ---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL---FENNGDRFLTGSRD 337 (1113)
T ss_pred ---cCCCCCceEeccccccccccCCCCCCcccccceeeee---ccccccccccccCC
Confidence 4444 99999999943 3222 333333 26666666665544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.34 Score=52.26 Aligned_cols=213 Identities=14% Similarity=0.170 Sum_probs=131.3
Q ss_pred cCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEe
Q 016020 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (396)
Q Consensus 125 N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~ 203 (396)
|++|. +-|+=.|++|. |.+.|. +.|.--.++|+--+...+ +-|| ..|..-|+---.+ ...-+.+
T Consensus 32 t~~pg--~~s~~w~~~n~-lvvas~-~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s----------~S~y~~s 96 (673)
T KOG4378|consen 32 TAEPG--DFSFNWQRRNF-LVVASM-AGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACAS----------QSLYEIS 96 (673)
T ss_pred CCCCc--ceeeeccccce-EEEeec-CCceeEEEecccCCCCccceeec-cccchHHHHhhhh----------cceeeec
Confidence 34444 77888898887 666553 445555666654432222 1122 1222222211111 1144566
Q ss_pred ecCCCeEEEEeccCce--------------EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 204 SAQDSIYKVFDLKNYT--------------MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 204 ~a~d~~YrVwdlknYs--------------~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
..+.+|+++|||+--- ..|--.|+.+..+..+.++.+ .++-||...-+|.+.
T Consensus 97 gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii--------------h~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII--------------HGTKTKQKTTTFTID 162 (673)
T ss_pred cCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE--------------EecccCccccceecC
Confidence 7889999999997321 457777788888888887775 334444444444421
Q ss_pred cccCC-ccchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeE-EEEEEc-CeEEEEecccc-
Q 016020 270 LHRNK-KVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN-RTVAVWNFRGE- 344 (396)
Q Consensus 270 L~~sk-~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~-gti~iWd~~ge- 344 (396)
-.++- -++|..--...|-+..+++.+-+||+-. +.+..-+..|..+-+..-|.+-+++ |+++-. -.|-+||.+++
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 11111 1455554455677888999999999987 6677789999999999999998876 667766 69999999985
Q ss_pred eeee-eccccccCCC-CCCCcEEE
Q 016020 345 LVTS-FEDHLLWHPD-CNTNNIYI 366 (396)
Q Consensus 345 L~t~-fedh~l~~~~-c~~n~~~i 366 (396)
++-. --+|-+.+.. -+++.+..
T Consensus 243 s~~~l~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred ccceeeecCCcceeeecCCceEEE
Confidence 3322 2344444333 44444443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.095 Score=34.97 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=34.8
Q ss_pred ceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 303 ~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
++++.+.++|.....+.-|.+++++++|-+. ++|.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678888899999999999999999999998 9999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.5 Score=42.31 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCCeEEeeCCCCcEEEeec---------CCCeEEEEeccCceEEEEecc---------CceEEEEEcCC-eEEEEEecCC
Q 016020 187 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPG-IMLLIFNRSS 247 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a---------~d~~YrVwdlknYs~lysIs~---------~~VqEIkiSpg-~~Ll~~q~~~ 247 (396)
+|..+ +.+-+..+-.+++ -+..+.|||.++.+.+-+|.- ..-..+.+||+ -.|++.+..
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~- 125 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS- 125 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-
Confidence 57776 8887777878888 799999999999999988883 33448889955 677777643
Q ss_pred CeeeeEEEEeecCcEEEEEE
Q 016020 248 SHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s~~ 267 (396)
..-.+.+.|+++++.+....
T Consensus 126 p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CCCEEEEEECCCCcEEEEEe
Confidence 13456899999999999876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.4 Score=48.74 Aligned_cols=136 Identities=9% Similarity=0.065 Sum_probs=91.6
Q ss_pred EEeecCCCeEEEEeccCce-EEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-
Q 016020 201 LTYSAQDSIYKVFDLKNYT-MLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK- 275 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs-~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~- 275 (396)
||-+-.++.+-+|++.+-= +.-.|.+ -.|..+.|++|--|+=... ...+.=||++||+.++... .-...
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~---sg~i~EwDl~~lk~~~~~d---~~gg~I 113 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL---SGSITEWDLHTLKQKYNID---SNGGAI 113 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC---CceEEEEecccCceeEEec---CCCcce
Confidence 5555668889999998743 4445554 7789999998887743333 4778889999999999655 22222
Q ss_pred --cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeecCe-EEEEEEcCeEEEEeccc
Q 016020 276 --VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 276 --i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~~q-LFLTfs~gti~iWd~~g 343 (396)
|+- -.-+..|+|+-||+-|.++++..++|+- .+.-+.--.=..-|.+++. ++---+||.|.+||...
T Consensus 114 Wsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 114 WSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred eEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 332 2256899999999999999999999875 2222211111223344554 33444557899999987
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=1 Score=45.98 Aligned_cols=154 Identities=14% Similarity=0.231 Sum_probs=102.0
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCc-----eEEEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeec---CcE
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIED---GTV 262 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Iet---G~~ 262 (396)
+.+++--+-+..|+-|-+-.|||++.. +-.----|++|-+|+|+.| ..++.+-++ +..+++||+-. .+.
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga--DGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA--DGSVRMFDLRSLEHSTI 234 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC--CCcEEEEEecccccceE
Confidence 333444455556778999999999997 2222234599999999964 454455455 88899999866 444
Q ss_pred EEEEE------eecccCCc-cchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeE-EEEEEc
Q 016020 263 LKVFY------HLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN 333 (396)
Q Consensus 263 l~s~~------~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~ 333 (396)
+++=- ++|.-++. +.||. .+.++..-++|+||+. ...+.-++.|...+-+.-.-|.+.- ..|.-+
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymA------Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMA------TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHh------hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 44211 22333332 55555 3456778899999998 4555678899888888888887654 566666
Q ss_pred -CeEEEEecccceeeeecccc
Q 016020 334 -RTVAVWNFRGELVTSFEDHL 353 (396)
Q Consensus 334 -gti~iWd~~geL~t~fedh~ 353 (396)
-.+.|||++.----..||-+
T Consensus 309 D~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cceEEEEecccccccCCCCch
Confidence 57899999874333444433
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.12 Score=54.96 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=121.1
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEE---------------------------------
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIK--------------------------------- 233 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIk--------------------------------- 233 (396)
|=.++|-. ||+-+....-.|+.--||+.+.+++++|.- |.|.|++
T Consensus 132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~ 210 (545)
T KOG1272|consen 132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI 210 (545)
T ss_pred CeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence 45577777 999999999999999999999998888875 4444443
Q ss_pred ------EcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh--hcceeeEeecCCeeeEEEcccceE
Q 016020 234 ------ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 234 ------iSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~--~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
+=|-++||+.... ...|+-.||.+|+...+++ ....+++-|+| .|.-|=++--++.+..|.-.+.+-
T Consensus 211 ~v~rLeFLPyHfLL~~~~~--~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASE--AGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred chhhhcccchhheeeeccc--CCceEEEeechhhhhHHHH---ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 3366677666555 6789999999999999988 55555555553 566677788899999999888765
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc--ceeeeec
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG--ELVTSFE 350 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g--eL~t~fe 350 (396)
+-=.-+|--+.++.-+-++++++.|--- +.++|||++. +|-|-.-
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 4433477788899999999999998865 9999999999 5655433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.83 Score=49.38 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=114.7
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-+|.|.. |..-||+-+..|.+.|-.+++...--.+.+ +-|-=++.||..- ||...+. ..-+.+||++--.+.+
T Consensus 125 t~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd--~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 125 TYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD--KGAVTLWDVQGMSPIF 201 (673)
T ss_pred EEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc--CCeEEEEeccCCCccc
Confidence 3788877 788999999999999999999875444433 4555667776553 3333333 5778999999877777
Q ss_pred EEEe-ecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEe
Q 016020 265 VFYH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWN 340 (396)
Q Consensus 265 s~~~-~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd 340 (396)
.+-- --++...|+|.+ .||+|++-- =|..|.|||+++++....+ +..-+-++.-|.++ ..+|..-+ |.+-.||
T Consensus 202 ~~~~~HsAP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYD 278 (673)
T ss_pred chhhhccCCcCcceecC-CccceEEEecccceEEEeeccccccccee-eecCCcceeeecCC-ceEEEeecCCceEEEEe
Confidence 6441 113344499999 788887765 7999999999998877643 22233344445554 45555433 9999999
Q ss_pred ccc--ceeeeeccccccCCCCCCCcEEEcc
Q 016020 341 FRG--ELVTSFEDHLLWHPDCNTNNIYITS 368 (396)
Q Consensus 341 ~~g--eL~t~fedh~l~~~~c~~n~~~it~ 368 (396)
.++ +.|+...-| .+.++--.|.++
T Consensus 279 ~R~~k~Pv~v~sah----~~sVt~vafq~s 304 (673)
T KOG4378|consen 279 MRSTKAPVAVRSAH----DASVTRVAFQPS 304 (673)
T ss_pred cccCCCCceEeeec----ccceeEEEeeec
Confidence 999 466655443 233444445444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.9 Score=44.36 Aligned_cols=243 Identities=17% Similarity=0.280 Sum_probs=150.8
Q ss_pred CCCCceEEEEeeecCCCeEEEEE------eEec-CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCC
Q 016020 126 VSPDEVIRSLFYNKNNDSLITVS------VYAS-DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (396)
Q Consensus 126 ~s~~evIrsifyN~~n~slI~vS------v~~s-d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~Ng 198 (396)
..++.+|+.+-|+..-+-+-+-| +|.+ ++=+.-.|-+- -|. ..| =-=...-.||.| |
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----Wra---h~~--Si~rV~WAhPEf-------G 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----WRA---HDG--SIWRVVWAHPEF-------G 73 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee----EEe---cCC--cEEEEEecCccc-------c
Confidence 44667889998888888776633 3331 11111111110 000 000 001245567887 9
Q ss_pred cEEEeecCCCeEEEEec---------cCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 199 KVLTYSAQDSIYKVFDL---------KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdl---------knYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
.|+|.++-|.+.+||-= +.....-++.| -.|.+|+|+|-++=|.+....++..|+|+..-+=-.|..-.
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999976 34457778888 78999999999988888888889999999887754444211
Q ss_pred ---------eecccCCccch------hhhhcceeeEeecC-----CeeeEEEcc--cceEEE--ecccccCCCceEEEee
Q 016020 268 ---------HLLHRNKKVDF------IEQFNEKLLVKQEN-----ENLQILDVR--NAELME--VSRTEFMTPSAFIFLY 323 (396)
Q Consensus 268 ---------~~L~~sk~i~F------iE~~~ekLLIKQed-----~~L~I~Dv~--~~ki~~--v~~t~~~~PsAFiFly 323 (396)
..+...+-.+| .+-..++|.++..+ ...+||--- .+|..+ .++++.++.++.-|-|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 01111111111 22234566666654 366776443 345555 5669999999999988
Q ss_pred cCe-----EEEEEEcCeEEEEeccc---------------------ceeeeecccc--ccCCC-CCCCcEEEccCCcEEE
Q 016020 324 ENQ-----LFLTFRNRTVAVWNFRG---------------------ELVTSFEDHL--LWHPD-CNTNNIYITSDQDLII 374 (396)
Q Consensus 324 ~~q-----LFLTfs~gti~iWd~~g---------------------eL~t~fedh~--l~~~~-c~~n~~~it~~qd~ii 374 (396)
.-. |=+.-.+| |.||.+.+ +++..|+||. -|.-- =-++++..|+.-|=-+
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 432 23334446 99999884 2566788886 22111 3467777777777665
Q ss_pred EeccCCCCCcc
Q 016020 375 SYCKAEPEDQW 385 (396)
Q Consensus 375 ~~~~~~~~~~~ 385 (396)
---|+.-.++|
T Consensus 313 RLWkany~n~~ 323 (361)
T KOG2445|consen 313 RLWKANYNNLW 323 (361)
T ss_pred eehhhhhhhhh
Confidence 55555555555
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.2 Score=46.42 Aligned_cols=137 Identities=14% Similarity=0.237 Sum_probs=101.7
Q ss_pred EEeecCCCeEEEEeccCceEEEEeccC-----ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 201 LTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs~lysIs~~-----~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
|.-..+++ +-|+|++|+++|-.|..- .++.+-++++--.|.+-..-...-+.|||..+=+....+. .|...
T Consensus 100 LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---aH~~~ 175 (391)
T KOG2110|consen 100 LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---AHKGP 175 (391)
T ss_pred EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE---ecCCc
Confidence 33345555 779999999999999873 4555555555557777777778999999999998888888 66666
Q ss_pred ---cchhhhhcceeeEeecCC-eeeEEEcccceEEE-eccccc-CCCceEEEeecCeEEEEEEc--CeEEEEeccc
Q 016020 276 ---VDFIEQFNEKLLVKQENE-NLQILDVRNAELME-VSRTEF-MTPSAFIFLYENQLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~-~L~I~Dv~~~ki~~-v~~t~~-~~PsAFiFly~~qLFLTfs~--gti~iWd~~g 343 (396)
+.|.. .|.+|....|.+ -||++++-+|+... --|+.. -......|.++++ ||+.++ +||-|+-+.-
T Consensus 176 lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 176 LAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 77887 999999999655 57999999976553 333332 2346778999999 555544 7998887654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.9 Score=42.08 Aligned_cols=151 Identities=9% Similarity=0.137 Sum_probs=86.8
Q ss_pred eEEeeCCCCcEEEeecCC----CeE-EEEeccCc--eEEEEecc---CceEEEEEcCCeE-EEEEecCCCeeeeEEEEee
Q 016020 190 FVEFDDVNGKVLTYSAQD----SIY-KVFDLKNY--TMLYSISD---KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d----~~Y-rVwdlknY--s~lysIs~---~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~Ie 258 (396)
...|.+ .|+.|++.+.. ..| ..||+.+. ...-.+.. ....+..|||+-- |++.....+..-+-++++.
T Consensus 235 ~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 235 MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 346776 78888876531 233 33777653 23344443 2346789997743 4443333333334455554
Q ss_pred c-CcEEEEEEeecccCCccchhhhhcceeeEee-c--CCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEc
Q 016020 259 D-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRN 333 (396)
Q Consensus 259 t-G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-e--d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~ 333 (396)
. |+....+...-.....+.|.+ +|++|+.-. + ...|.+||+.+++...+..+ ........|.++++. +++...
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECC
Confidence 2 333332321111223467777 788887643 3 24799999999999887544 234566778988764 334332
Q ss_pred ---CeEEEEeccc
Q 016020 334 ---RTVAVWNFRG 343 (396)
Q Consensus 334 ---gti~iWd~~g 343 (396)
..+-+||++|
T Consensus 392 ~g~~~L~~vdl~~ 404 (428)
T PRK01029 392 SNESELYLISLIT 404 (428)
T ss_pred CCCceEEEEECCC
Confidence 4677788887
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.11 Score=57.10 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=68.5
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEE
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
-|-+|+.++ |+++.++. |-++--+-|++..-|..|++||+++.+.+.-+-+|.+..-.|-.++++++.-
T Consensus 668 tPe~~lt~h-~eKI~slR----------fHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 668 TPEKILTIH-GEKITSLR----------FHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred Ccceeeecc-cceEEEEE----------ecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence 455666665 34555555 4455667889999999999999999999998899999999999999999999
Q ss_pred EEEc-CeEEEEeccc
Q 016020 330 TFRN-RTVAVWNFRG 343 (396)
Q Consensus 330 Tfs~-gti~iWd~~g 343 (396)
|+.. |++.+|+-+.
T Consensus 737 tVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRS 751 (1012)
T ss_pred eeecCceEEEeCCCC
Confidence 9987 9999998665
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=53.41 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=70.4
Q ss_pred ccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceee-
Q 016020 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVT- 347 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t- 347 (396)
++..-++|.. -|.+|.++=-|+.+.|||+.|..+-+|.-+|--+..+.-.++++.+.||.|- .+|+.||+.. .++-
T Consensus 24 ~~a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 24 PLAECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred CccceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 3345589998 9999999999999999999999999999999999999999999999999887 8999999876 5433
Q ss_pred -eeccc
Q 016020 348 -SFEDH 352 (396)
Q Consensus 348 -~fedh 352 (396)
.|+--
T Consensus 103 irf~sp 108 (405)
T KOG1273|consen 103 IRFDSP 108 (405)
T ss_pred EEccCc
Confidence 45443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.72 Score=50.30 Aligned_cols=147 Identities=17% Similarity=0.297 Sum_probs=100.6
Q ss_pred CeEEeeCCCCcEE-EeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 189 GFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 189 gfVEFDd~NgkIl-t~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-||.+.+ -|--| |++.+ | +.+|.=++|.++=...+-+||=|-+||.=--|+.-++.
T Consensus 214 tyv~wSP-~GTYL~t~Hk~-G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~-------------------- 270 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQ-G-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPE-------------------- 270 (698)
T ss_pred eeEEecC-CceEEEEEecc-c-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCC--------------------
Confidence 4777888 44444 44433 3 78999999999999999999999999987666655541
Q ss_pred eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG- 343 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g- 343 (396)
+-..+- ++-|++.|.||||+||.+.+ +.++....=.-|..+++...|--.--++|.||+.-.
T Consensus 271 ---p~~~~~-----------~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf 336 (698)
T KOG2314|consen 271 ---PIIVEE-----------DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF 336 (698)
T ss_pred ---ccccCc-----------ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce
Confidence 110110 16789999999999999987 333444444567889999999888889999999887
Q ss_pred ceee------eeccccccCCCCCCCcEEEccCCcEEEEeccCCCCCc
Q 016020 344 ELVT------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (396)
Q Consensus 344 eL~t------~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~ 384 (396)
.|+- +==+...| ||+ +-++.|.-.+.+++
T Consensus 337 ~lld~Kslki~gIr~Fsw---sP~---------~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 337 MLLDKKSLKISGIRDFSW---SPT---------SNLLAYWTPETNNI 371 (698)
T ss_pred eeecccccCCccccCccc---CCC---------cceEEEEcccccCC
Confidence 3321 11123456 666 44666766554443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.19 Score=51.78 Aligned_cols=194 Identities=18% Similarity=0.301 Sum_probs=123.2
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCe
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~ 209 (396)
-.++.-....-..|.+-| .+ .+|+|--.|.+..-++- .+..+|+. .++++| .+
T Consensus 51 f~kgckWSPDGSciL~~s----ed-n~l~~~nlP~dlys~~~--~~~~~~~~~~~~r~~------------------eg- 104 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLS----ED-NCLNCWNLPFDLYSKKA--DGPLNFSKHLSYRYQ------------------EG- 104 (406)
T ss_pred hhccceeCCCCceEEeec----cc-CeeeEEecChhhcccCC--CCccccccceeEEec------------------cC-
Confidence 445555554444443322 23 67999999888776642 23334433 222222 11
Q ss_pred EEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee-----cccCCccchhhhhcc
Q 016020 210 YKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-----LHRNKKVDFIEQFNE 284 (396)
Q Consensus 210 YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~-----L~~sk~i~FiE~~~e 284 (396)
-.|+|.--|+.+.+.. |...|.+..+. +-|++|||..||+.-.++.-. +.-.-.++|.+ +||
T Consensus 105 ~tvydy~wYs~M~s~q----------P~t~l~a~ssr--~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGe 171 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQ----------PSTNLFAVSSR--DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGE 171 (406)
T ss_pred CEEEEEEeeeccccCC----------Cccceeeeccc--cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCC
Confidence 2467777788888776 78887776666 789999999999988876511 11122389999 999
Q ss_pred eeeEeecCCeeeEEEc-ccceEEEecccc-------cCCCceEEEeecCeEEEEEEc--CeEEEEecccc--eeeeecc-
Q 016020 285 KLLVKQENENLQILDV-RNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGE--LVTSFED- 351 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv-~~~ki~~v~~t~-------~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ge--L~t~fed- 351 (396)
+|+-+ .+..|+++|+ +.|.--.+-.|. .--.+.|-|.|...-.+..-. +++-||.-++. |-+.++.
T Consensus 172 qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~ 250 (406)
T KOG2919|consen 172 QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG 250 (406)
T ss_pred eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence 98755 6778999999 444433332222 224688999997775555544 79999998884 4444432
Q ss_pred ----ccccCCCCCCCcEEEc
Q 016020 352 ----HLLWHPDCNTNNIYIT 367 (396)
Q Consensus 352 ----h~l~~~~c~~n~~~it 367 (396)
|+-| |+++|.+.+
T Consensus 251 gGvThL~~---~edGn~lfs 267 (406)
T KOG2919|consen 251 GGVTHLQW---CEDGNKLFS 267 (406)
T ss_pred CCeeeEEe---ccCcCeecc
Confidence 5666 666666554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.63 Score=48.11 Aligned_cols=144 Identities=11% Similarity=0.287 Sum_probs=95.3
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
|+...--+=|.+--+||.++...+-.+++ .+..-.---|.--|.+..+. +-.+.+||.- +-+.+..-+.+|+--
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr--DtTFRLWDFR--eaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR--DTTFRLWDFR--EAIQSVAVFQGHTDT 359 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc--CceeEeccch--hhcceeeeecccccc
Confidence 33333334488999999999999999987 33333333466666666666 5778889876 334444444466554
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecCeEEEEE--EcCeEEEEecccceeeee
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFRGELVTSF 349 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTf--s~gti~iWd~~geL~t~f 349 (396)
+-|. -+.+++.+.+|..++|||+++- .-+-+-+ .+.|.-=+.+-.++-...+ -|+-|+++|++|+.+..+
T Consensus 360 VTS~vF~--~dd~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 360 VTSVVFN--TDDRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred eeEEEEe--cCCceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCCccccC
Confidence 2232 4689999999999999999982 2222222 3455555666666654444 458999999999866544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.16 E-value=3.2 Score=38.67 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=101.1
Q ss_pred CCCeEEEEeccCceEEE---------------Eecc-CceEEEE----EcCCeEEEEEecCCCeeeeEEEEeecC-----
Q 016020 206 QDSIYKVFDLKNYTMLY---------------SISD-KHVQEIK----ISPGIMLLIFNRSSSHVPLKILSIEDG----- 260 (396)
Q Consensus 206 ~d~~YrVwdlknYs~ly---------------sIs~-~~VqEIk----iSpg~~Ll~~q~~~~~iplkIl~IetG----- 260 (396)
.|+...+++|.+....+ .+.. .+++-++ ...+..|.+.... .+.||....+
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFS 129 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCccccc
Confidence 35777778877777666 4443 5677666 3344455444444 7888888774
Q ss_pred cEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC-----------CCceEEEeecCeEEE
Q 016020 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM-----------TPSAFIFLYENQLFL 329 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~-----------~PsAFiFly~~qLFL 329 (396)
+.++++.. + ..+..+.-++.+|.+...++ ..++|+.++....++..... .|-+-+=++++++.|
T Consensus 130 ~~~ke~~l--p--~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll 204 (275)
T PF00780_consen 130 KLLKEISL--P--DPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL 204 (275)
T ss_pred ceeEEEEc--C--CCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE
Confidence 45566553 2 34444555589999998665 99999999998887644332 355555566666666
Q ss_pred EEEcCeEEEEecccceeeeeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 330 TFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 330 Tfs~gti~iWd~~geL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.+ ++.--+-|.+|+... ...+-|... |..-.| ....||....
T Consensus 205 ~~-~~~g~fv~~~G~~~r--~~~i~W~~~-p~~~~~---~~pyli~~~~ 246 (275)
T PF00780_consen 205 CY-DNIGVFVNKNGEPSR--KSTIQWSSA-PQSVAY---SSPYLIAFSS 246 (275)
T ss_pred Ee-cceEEEEcCCCCcCc--ccEEEcCCc-hhEEEE---ECCEEEEECC
Confidence 54 567778899998666 788889653 333333 3345555544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.15 Score=56.94 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=63.5
Q ss_pred ceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe----EEEEEEcCeEEEEeccc-ceeeeeccccccCC
Q 016020 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ----LFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHP 357 (396)
Q Consensus 284 ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q----LFLTfs~gti~iWd~~g-eL~t~fedh~l~~~ 357 (396)
++-|+-+-+..++||.+.|++++.++..+.++...-++++... +|+.+.+|+|.+||... +|.+.||-+..-|.
T Consensus 28 ~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~ 106 (792)
T KOG1963|consen 28 AKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA 106 (792)
T ss_pred CcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence 4555668899999999999999999999999999999998666 46777779999999998 89998888776543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=93.07 E-value=12 Score=38.48 Aligned_cols=240 Identities=10% Similarity=0.082 Sum_probs=133.5
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC-----CCCcceee
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-----SGFALFES 182 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~-----~~~~LF~~ 182 (396)
|.-.++|..+++.+=.|-.+..= |-+ .++.+..|-+++.|.+----+-....+.+=+...+++- .+.|-|.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-
Confidence 77788888888888877765433 335 77777777776665332222222233333333333321 2234455
Q ss_pred cccCCCCeEEeeCCCCcEEE-eecC-CCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCe-----eeeEEE
Q 016020 183 ESLKWPGFVEFDDVNGKVLT-YSAQ-DSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSH-----VPLKIL 255 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt-~~a~-d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~-----iplkIl 255 (396)
...+|..+-+.+ +||.|- ++-. +...-|.|+...+.+.+|.= -++..++......+. ..+.-.
T Consensus 103 -~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--------p~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 103 -VGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--------PDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred -ccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--------CCCcEEEEecCCccEEEeecCceEEE
Confidence 577899999999 777655 6644 99999999999998887773 222333332222111 111111
Q ss_pred Eee-cCcEEEEEEeeccc------CCccchhhhhcceeeEeecCCeeeEEEccc-----ceEEEeccc----ccCCCce-
Q 016020 256 SIE-DGTVLKVFYHLLHR------NKKVDFIEQFNEKLLVKQENENLQILDVRN-----AELMEVSRT----EFMTPSA- 318 (396)
Q Consensus 256 ~Ie-tG~~l~s~~~~L~~------sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~-----~ki~~v~~t----~~~~PsA- 318 (396)
.+. +|+....-....+. .++ .|....|.++.+-.| +.+.+.|+.. .+...+... ....|..
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 111 22211111101111 122 565658888889999 9999999544 444433211 1223333
Q ss_pred --EEEeec-CeEEEEE--------Ec--CeEEEEeccc-ceeeeec-cccccCCC-CCCCc
Q 016020 319 --FIFLYE-NQLFLTF--------RN--RTVAVWNFRG-ELVTSFE-DHLLWHPD-CNTNN 363 (396)
Q Consensus 319 --FiFly~-~qLFLTf--------s~--gti~iWd~~g-eL~t~fe-dh~l~~~~-c~~n~ 363 (396)
.-+.++ +.||+.- .. +.|.++|... +.+..++ ++.+|..- .+|++
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCC
Confidence 555545 5666643 12 5899999988 6776665 67777433 44433
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.93 Score=47.62 Aligned_cols=130 Identities=20% Similarity=0.299 Sum_probs=84.6
Q ss_pred EEeeCCCCc-EEEeecCCCeEEEEeccCc-------e--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 191 VEFDDVNGK-VLTYSAQDSIYKVFDLKNY-------T--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 191 VEFDd~Ngk-Ilt~~a~d~~YrVwdlknY-------s--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
|+|-. |+. .+|....|..+|+|-+..- + .+=+++. ..|--||++|.--||.+.++
T Consensus 19 ~dfq~-n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D------------ 85 (434)
T KOG1009|consen 19 VDFQK-NSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD------------ 85 (434)
T ss_pred EEecc-CcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC------------
Confidence 44444 454 7888888999999976432 2 2223333 56666777766666666665
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc--------ceEEEecccccCCCceEEEeecCeEEEE
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------AELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~--------~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
.++-+|-||.+ .+|.|-.+ -...++.++|...+.-.-..++++...+
T Consensus 86 -----------------------~g~v~lWk~~~--~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 86 -----------------------GGEVFLWKQGD--VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred -----------------------CceEEEEEecC--cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 22222223332 22222223 2445577788888888888888877666
Q ss_pred EEc-CeEEEEeccc-ceeeeeccccccCCC
Q 016020 331 FRN-RTVAVWNFRG-ELVTSFEDHLLWHPD 358 (396)
Q Consensus 331 fs~-gti~iWd~~g-eL~t~fedh~l~~~~ 358 (396)
-|= +++.+||++- ++.+-++||--+++.
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccce
Confidence 665 8999999987 899999999888766
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=3.5 Score=44.19 Aligned_cols=174 Identities=18% Similarity=0.270 Sum_probs=108.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-----------CCeEEEEEecCCCeeeeEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-----------PGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-----------pg~~Ll~~q~~~~~iplkIl 255 (396)
-|-|-+ +.-+|.-...|++.| +|.|++ .-||.|.+. .|...++..+. --.+..|
T Consensus 218 sv~FHp-~~plllvaG~d~~lr---------ifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--rky~ysy 285 (514)
T KOG2055|consen 218 SVQFHP-TAPLLLVAGLDGTLR---------IFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--RKYLYSY 285 (514)
T ss_pred EEEecC-CCceEEEecCCCcEE---------EEEecCccChhheeeeeccCccceeeecCCCceEEEeccc--ceEEEEe
Confidence 355555 233333334566555 455555 345555544 35534444444 3788999
Q ss_pred EeecCcEEEEEEeecccCCccchhhhh-----cceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEE
Q 016020 256 SIEDGTVLKVFYHLLHRNKKVDFIEQF-----NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~i~FiE~~-----~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
|+++++..+-=. +.+-+=+++|.| +.+|++.-.++-|.++-..|++++-.-.- ---.++|.|.-++...+.
T Consensus 286 Dle~ak~~k~~~---~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 286 DLETAKVTKLKP---PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLA 361 (514)
T ss_pred eccccccccccC---CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEE
Confidence 999999876211 222233356655 78999999999999999999998853222 224588999888766555
Q ss_pred EE-cCeEEEEecccc-eeeeecccccc--CCCC--CCCcEEEccCCcEEEEeccC
Q 016020 331 FR-NRTVAVWNFRGE-LVTSFEDHLLW--HPDC--NTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 331 fs-~gti~iWd~~ge-L~t~fedh~l~--~~~c--~~n~~~it~~qd~ii~~~~~ 379 (396)
.. +|.|-+||++-. .+..|-|.=.- +..| .+..++-|..+-=||--|+-
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 54 499999999985 44455444333 2335 56666666666666665553
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.33 Score=52.44 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=117.8
Q ss_pred CCcEEEeecCCCeEEEEeccCceE-E---EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTM-L---YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~-l---ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
+|+-|.-...-++.-||||..=+. + -.=++-+-+-+.+||+.-|.+.--. +.-+.|||+++-.....|. +|
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs--dGnI~vwDLhnq~~Vrqfq---Gh 550 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS--DGNIAVWDLHNQTLVRQFQ---GH 550 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc--CCcEEEEEcccceeeeccc---CC
Confidence 588888778889999999987762 2 1223366777899999999888877 6678999999999888877 55
Q ss_pred CCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee----cC-eEEEEEEcCeEEEEeccc-
Q 016020 273 NKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY----EN-QLFLTFRNRTVAVWNFRG- 343 (396)
Q Consensus 273 sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly----~~-qLFLTfs~gti~iWd~~g- 343 (396)
+-- |+-. .+|-+|-.+-=|..++.||++.++-. ..|.| +.+||+- ++ =|-|-.-|+.++|-...|
T Consensus 551 tDGascIdis-~dGtklWTGGlDntvRcWDlregrql---qqhdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 551 TDGASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQL---QQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred CCCceeEEec-CCCceeecCCCccceeehhhhhhhhh---hhhhh--hhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 433 5533 37999999999999999999985432 24554 4566642 22 234556678899988888
Q ss_pred c--eeeeeccccccCCCCCCCcEEEccCCcE
Q 016020 344 E--LVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 344 e--L~t~fedh~l~~~~c~~n~~~it~~qd~ 372 (396)
+ -++.=|--+|..-+-+-++-|+|..-|=
T Consensus 625 ~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 625 EKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred cceeecccccEEEEEEecccCceeeecCchh
Confidence 3 3444444455555567778888766553
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=92.24 E-value=2.4 Score=47.24 Aligned_cols=164 Identities=11% Similarity=0.161 Sum_probs=115.3
Q ss_pred eeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEecc-Cce-EEEEeccCceEEEEE
Q 016020 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT-MLYSISDKHVQEIKI 234 (396)
Q Consensus 157 ~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs-~lysIs~~~VqEIki 234 (396)
.|+.+..++++++.=+. ++ .|. -+.+...|+.++.|-++ +|- ++|.|.+-..-.+-+
T Consensus 49 ~l~GH~a~VnC~~~l~~--------s~---~~a----------~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPT--------SE---IVA----------EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV 107 (764)
T ss_pred eccCCccceEEEEEccc--------cc---ccc----------eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE
Confidence 37777777777776332 22 122 24456789999999999 554 899999877777788
Q ss_pred cCCeEEEEEecCCCeeeeEEEEeecCc--EEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce-----EEE
Q 016020 235 SPGIMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-----LME 307 (396)
Q Consensus 235 Spg~~Ll~~q~~~~~iplkIl~IetG~--~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k-----i~~ 307 (396)
.....++... ..+-.+.+|+++.-+ .+..+++-..---++++-+.-+++..+-.-|++..+.++..+. ...
T Consensus 108 ~a~~~~~~~~--~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 108 VARSSVMTCK--AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EeeeeEEEee--ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 8888877773 456778899997666 3333332111111145555558888888888888888888754 555
Q ss_pred ecccccCCCceEEEeec--CeEEEEEEc--CeEEEEeccc
Q 016020 308 VSRTEFMTPSAFIFLYE--NQLFLTFRN--RTVAVWNFRG 343 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~--~qLFLTfs~--gti~iWd~~g 343 (396)
.+++|.++.+..=|... +.+||.-++ ++|+||...-
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~ 225 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVL 225 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEe
Confidence 88999999999888653 368888777 8999998765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.1 Score=45.31 Aligned_cols=148 Identities=12% Similarity=0.087 Sum_probs=97.1
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCc----------eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNY----------TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknY----------s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
+.+++.+--.+++.-+++++-.||+-.. +..|-+-. +.|.++-+-+---==+...+ ...+..|++.
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga--~dkl~~~Sl~ 235 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA--DDKLVMYSLN 235 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc--cccceeeeec
Confidence 4677878888899999999999999997 33333322 45555544311100011111 2333444444
Q ss_pred c--CcEEEEEEeec--ccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-
Q 016020 259 D--GTVLKVFYHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 259 t--G~~l~s~~~~L--~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
. |.....-.+-| +--..+. |-.++.-+...-=|+.++||+-++..-+-|++-|....-+.-|.++.+|+-..|.
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvr-IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVR-IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cccCcccccceEEecCCCccceE-EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 3 22222111111 1112233 4457777777779999999999999999999999999999999999999888877
Q ss_pred CeEEEEec
Q 016020 334 RTVAVWNF 341 (396)
Q Consensus 334 gti~iWd~ 341 (396)
+.|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 89999985
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.2 Score=44.69 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=107.8
Q ss_pred EEeeCCCCcEEEeecCC--CeEEEEeccCceEEEEecc-----------CceEEEEEcCC--eEEEEEecCCCeeeeEEE
Q 016020 191 VEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISD-----------KHVQEIKISPG--IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d--~~YrVwdlknYs~lysIs~-----------~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl 255 (396)
++=++.---|+|+..-. ...++||+.+-+++++=.. .=+++|+|-|| ..-++.--. .-.+.++
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~--~hqvR~Y 231 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR--YHQVRLY 231 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec--ceeEEEe
Confidence 55666677788888887 8999999999998887654 12467888777 333333322 4567888
Q ss_pred EeecCcEEE-EEEeecccCCccchh--hhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEE
Q 016020 256 SIEDGTVLK-VFYHLLHRNKKVDFI--EQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 256 ~IetG~~l~-s~~~~L~~sk~i~Fi--E~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTf 331 (396)
|...|..=+ .|.+. ...|-++ -+.+..|++.---+.|-++|++++++... .....-.++..+-.+..++..+-
T Consensus 232 Dt~~qRRPV~~fd~~---E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 232 DTRHQRRPVAQFDFL---ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred cCcccCcceeEeccc---cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence 888776544 34422 1112111 13577799999999999999999999986 88888899999988888876665
Q ss_pred Ec-CeEEEEeccc
Q 016020 332 RN-RTVAVWNFRG 343 (396)
Q Consensus 332 s~-gti~iWd~~g 343 (396)
.= |.++|+|.+-
T Consensus 309 GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 309 GLDRYVRIHDIKT 321 (412)
T ss_pred ccceeEEEeeccc
Confidence 53 9999999987
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=91.84 E-value=18 Score=37.74 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=92.5
Q ss_pred EEeeCCCCc---EEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEec--------------CCCeeeeE
Q 016020 191 VEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR--------------SSSHVPLK 253 (396)
Q Consensus 191 VEFDd~Ngk---Ilt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~--------------~~~~iplk 253 (396)
.+-.+++|. ++.....++.+..+|++|.+.+.+.+.. ...+..+|+.+.+-... ....--+.
T Consensus 291 ~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 291 ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 333345565 4444556888999999999999886532 24456677665543211 11234588
Q ss_pred EEEeecCcEEEEEEeecccCC-----cc--chhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEee
Q 016020 254 ILSIEDGTVLKVFYHLLHRNK-----KV--DFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLY 323 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk-----~i--~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly 323 (396)
-+|..||+.+=+.....++.. +. -=+-..+..|++...++.|..+|..|++++- +......+| .+|..
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~ 447 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEV 447 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC--EEEEe
Confidence 899999999988774322211 00 0012367889999999999999999999874 433333334 55677
Q ss_pred cCeEEEEEEcC
Q 016020 324 ENQLFLTFRNR 334 (396)
Q Consensus 324 ~~qLFLTfs~g 334 (396)
++.+|+.+-+|
T Consensus 448 ~g~~yv~~~~g 458 (488)
T cd00216 448 NGKQYVGVMVG 458 (488)
T ss_pred CCEEEEEEEec
Confidence 99999999885
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.72 E-value=7.2 Score=42.36 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=103.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEec-cCce--EEEEeccCceEEEEEcCC-----eEEEEEecCCCeeeeEEEEeecCcE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDL-KNYT--MLYSISDKHVQEIKISPG-----IMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdl-knYs--~lysIs~~~VqEIkiSpg-----~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
+.|.- +++-+|+= ..+.+.|.++ .|.. ....+.-++|+++.|||+ +..++-...+..--+.||+|--+..
T Consensus 137 ~k~s~-~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 137 LKFSI-DDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeee-cchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 44443 34444433 3445556664 1111 233444589999999999 5555555555667789999999998
Q ss_pred EEEEEeecccCCccchhhhhcceeeEeec-----------CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE-----------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLIKQe-----------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+++-++.-..+-.+-. ...|+|||+.-+ ..+|.|+++.-+ =+.|...-..++-.|.+.+.+.-|.++
T Consensus 215 l~tk~lfk~~~~qLkW-~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 215 LVTKNLFKVSGVQLKW-QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeEeecccEEEE-ecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEE
Confidence 8865543233222222 347888887652 268999999844 444555567889999999999999999
Q ss_pred Ec---CeEEEEecccceeee
Q 016020 332 RN---RTVAVWNFRGELVTS 348 (396)
Q Consensus 332 s~---gti~iWd~~geL~t~ 348 (396)
+- -++.++|++|+|+-.
T Consensus 293 ~g~~pa~~s~~~lr~Nl~~~ 312 (561)
T COG5354 293 SGYMPASVSVFDLRGNLRFY 312 (561)
T ss_pred ecccccceeecccccceEEe
Confidence 93 799999999987643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.2 Score=42.81 Aligned_cols=186 Identities=18% Similarity=0.288 Sum_probs=121.1
Q ss_pred CCCcEEEeecCCCeEEEEeccCce---EEEEecc--CceEEEEEcC---CeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 196 VNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 196 ~NgkIlt~~a~d~~YrVwdlknYs---~lysIs~--~~VqEIkiSp---g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
.-||-||-++.|+++|||..++-. +|-++.+ --|+++.+-- |.+| .+..-+..+.||-=++|.=.+.-.
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iL---AScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTIL---ASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEe---eEeecCceEEEEecCCCchhhhhh
Confidence 368888889999999999999865 5666666 5688888874 4443 333446888999999996655433
Q ss_pred eec--ccCCccchhhh-hcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeec---C-----------eE
Q 016020 268 HLL--HRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYE---N-----------QL 327 (396)
Q Consensus 268 ~~L--~~sk~i~FiE~-~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~---~-----------qL 327 (396)
+-- .+-+.|+|-+- .|=-|+...-|+.+.|++..+. ...++...|..-..+.-.-|- + ..
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 222 23344777762 3344677889999999999886 222233333333333333221 2 23
Q ss_pred EEEEEc-CeEEEEeccc---ceeeeeccccccCCC---CCCC---cEEE-ccCC--cEEEEeccCCCCCcc
Q 016020 328 FLTFRN-RTVAVWNFRG---ELVTSFEDHLLWHPD---CNTN---NIYI-TSDQ--DLIISYCKAEPEDQW 385 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g---eL~t~fedh~l~~~~---c~~n---~~~i-t~~q--d~ii~~~~~~~~~~~ 385 (396)
|++--+ ++|+||.++. .+-..||+|-=|+-+ ||.+ +.+| |..| -+||=-+..+ ..+|
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~w 247 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPW 247 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-cCcc
Confidence 666555 8999999999 366679999988877 7776 3333 3444 4777666643 3444
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.2 Score=44.69 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=91.2
Q ss_pred eCCCCcEEEeecCCCeEEEEecc-----CceEEEEeccCceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLK-----NYTMLYSISDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlk-----nYs~lysIs~~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
=..||+++|. -.++...||..| .=..+.-=++-.+-.++-+|++= +..+.+..+.--++|||+|+++.+-+.+
T Consensus 112 ~~~dg~Litc-~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 112 KLADGTLITC-VSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred hhcCCEEEEE-ecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 3457888885 567889999998 33344444445555566554432 2245777778889999999997776665
Q ss_pred eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeec--CeEEEEEEc-CeEEEEecccc
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--NQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~--~qLFLTfs~-gti~iWd~~ge 344 (396)
- .++..++ ++ .--|+.+..|++. ++-|+|..- +.+++||.+.+
T Consensus 191 N--vpnD~L~----------------------------Lr----VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 191 N--VPNDRLG----------------------------LR----VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred C--CCCcccc----------------------------ce----eeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 1 1111122 11 1236678889998 999999988 99999999996
Q ss_pred --eee--eecccccc-CCCCCCCcEEEccC
Q 016020 345 --LVT--SFEDHLLW-HPDCNTNNIYITSD 369 (396)
Q Consensus 345 --L~t--~fedh~l~-~~~c~~n~~~it~~ 369 (396)
.|. .|..+.+. .-+.|..|..+++|
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEec
Confidence 343 44444433 44456655555544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.99 Score=46.67 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=118.3
Q ss_pred CCcEEEeecCCCeEEEEec---cCce-----EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe-------ec
Q 016020 197 NGKVLTYSAQDSIYKVFDL---KNYT-----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI-------ED 259 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdl---knYs-----~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-------et 259 (396)
|||-+|.++=.-.++||-. |+++ ..+++++ -.|.-..|||++-=++.-+. +...+|||+ ||
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk--DG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK--DGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec--CCcEEEeeccceEecCCC
Confidence 8999999999999999974 4444 7888888 78999999999998888877 788999997 34
Q ss_pred CcEEEEEEeecccC-Cc-cchhhh-hcceeeEeecCCeeeEEEcccceEEE-ecccccCCCceEEEeecCeEEEEEEcCe
Q 016020 260 GTVLKVFYHLLHRN-KK-VDFIEQ-FNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRNRT 335 (396)
Q Consensus 260 G~~l~s~~~~L~~s-k~-i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~gt 335 (396)
-+.|+.+-.+|+-. .+ +. +|. =+.++|--..|..|+.|.-.+++-+. ..+.|.-+.+..-|..++...-|.-++.
T Consensus 317 pk~Lk~g~~pl~aag~~p~R-L~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVR-LELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred chHhhcCCcchhhcCCCceE-EEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeeccee
Confidence 44455442233322 22 22 221 25577888899999999999988887 5567788889999999999999999998
Q ss_pred EEEEe-ccc--ceeeeeccccc
Q 016020 336 VAVWN-FRG--ELVTSFEDHLL 354 (396)
Q Consensus 336 i~iWd-~~g--eL~t~fedh~l 354 (396)
+.+.- +.| ..|.-++.|++
T Consensus 396 vrv~~ntpg~~~~V~~~~~~l~ 417 (420)
T KOG2096|consen 396 VRVIRNTPGWHSRVVKLNRELP 417 (420)
T ss_pred eeeecCCCchhhHHHHhhcccc
Confidence 88764 777 36667777664
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.26 E-value=8.5 Score=38.94 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=97.6
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEE--
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-- 267 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-- 267 (396)
.|+-.+-|+++. -|++.--||+++++.--+..+ +-|+.+.-. ....+ ++.. .+..++|||..|+++...+.
T Consensus 122 ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi-lsG~--EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 122 LDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI-LSGA--EDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred eccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce-eecC--CCccEEEEeccccceeEEeccc
Confidence 344445555544 699999999999996555555 888888773 23332 2333 36899999999999998765
Q ss_pred ---eec-ccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEE-cCeEEEEe
Q 016020 268 ---HLL-HRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 340 (396)
Q Consensus 268 ---~~L-~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs-~gti~iWd 340 (396)
-+| ++..+ |-=+. -+|--|+=--|.+|-+|.+++++.+.| |.-|.-..-+. +..+.|..- -+-|.=|.
T Consensus 198 k~~~~lRp~~g~wigala-~~edWlvCGgGp~lslwhLrsse~t~v----fpipa~v~~v~F~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALA-VNEDWLVCGGGPKLSLWHLRSSESTCV----FPIPARVHLVDFVDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred cChhhcCcccCceeEEEe-ccCceEEecCCCceeEEeccCCCceEE----EecccceeEeeeecceEEEeccccceeeee
Confidence 111 22222 33344 333444445688999999999999975 22233222221 222344444 36899999
Q ss_pred cccceee--eecccccc
Q 016020 341 FRGELVT--SFEDHLLW 355 (396)
Q Consensus 341 ~~geL~t--~fedh~l~ 355 (396)
+.|.|.+ -+|-|..+
T Consensus 273 l~Gvl~a~ip~~s~~c~ 289 (325)
T KOG0649|consen 273 LNGVLQANIPVESTACY 289 (325)
T ss_pred eccEEEEeccCCcccee
Confidence 9998776 56666654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.75 E-value=3.4 Score=48.24 Aligned_cols=174 Identities=19% Similarity=0.268 Sum_probs=115.0
Q ss_pred ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEEcC---CeEEEEEecCCCee
Q 016020 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKISP---GIMLLIFNRSSSHV 250 (396)
Q Consensus 179 LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIkiSp---g~~Ll~~q~~~~~i 250 (396)
-|.+....-|--+.|-+-.--++|++- ...++|||.+..+.+=..+. ..|.++.+=+ ..+||+.. .+.
T Consensus 1058 ~~~~~n~~~pk~~~~hpf~p~i~~ad~-r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas---~dG 1133 (1387)
T KOG1517|consen 1058 KFMTGNNQPPKTLKFHPFEPQIAAADD-RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS---SDG 1133 (1387)
T ss_pred HHHhcCCCCCceeeecCCCceeEEcCC-cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec---cCc
Confidence 455666777889999887777766433 56799999999998877665 6677777653 34444433 357
Q ss_pred eeEEEE-eecC---cEEEEEEeecccCCc--------cchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCc
Q 016020 251 PLKILS-IEDG---TVLKVFYHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPS 317 (396)
Q Consensus 251 plkIl~-IetG---~~l~s~~~~L~~sk~--------i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~Ps 317 (396)
-++||. -+++ .+|++.=.-|....+ ++ -+|...+||+.-+=..++|||..+-++.. ++-.-.-.+.
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d-WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD-WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeee-hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 888984 3333 445542211111111 55 45688999999999999999999876666 5444333344
Q ss_pred eEEE-eec-CeEEEEEEcCeEEEEecccc----eeeeeccccccCC
Q 016020 318 AFIF-LYE-NQLFLTFRNRTVAVWNFRGE----LVTSFEDHLLWHP 357 (396)
Q Consensus 318 AFiF-ly~-~qLFLTfs~gti~iWd~~ge----L~t~fedh~l~~~ 357 (396)
|.-. +.+ +.+-.-|.||++++||.+-. +|-.--.|.-|.+
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 4333 233 55566689999999999983 6666667776633
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.4 Score=50.03 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=73.8
Q ss_pred CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc----ceeeee
Q 016020 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG----ELVTSF 349 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g----eL~t~f 349 (396)
+-+.|+. .|.+|.+.-+|+-||||+.-+-+...--..+--...-..|++++++..++.....+||+++- +.+|.+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence 4466776 89999999999999999977765555555666778999999999999999999999999986 245556
Q ss_pred ccccccCCC--CCCC---cEEEccCC
Q 016020 350 EDHLLWHPD--CNTN---NIYITSDQ 370 (396)
Q Consensus 350 edh~l~~~~--c~~n---~~~it~~q 370 (396)
+..+....= -++| ++|+.+.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~ 252 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQ 252 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEec
Confidence 666665332 4555 77776654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.37 E-value=1.6 Score=43.78 Aligned_cols=197 Identities=18% Similarity=0.232 Sum_probs=130.1
Q ss_pred ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEe--ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysI--s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
+..-.||-| |.|||+++=|+.+.||..+|.. ++|+- -+--|-+|.+-|.=.=|+..-+.++..+.||++
T Consensus 61 qv~wahPk~-------G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 61 KVAWAHPKF-------GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY 133 (299)
T ss_pred EEeeccccc-------CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence 366778887 8999999999999999999986 44444 447788899988655445555566788888888
Q ss_pred ecC-c-EEEE--EEeecccCCccchhhh-------------hcceeeEeecCCeeeEEEcccce--EEEecccccCCCce
Q 016020 258 EDG-T-VLKV--FYHLLHRNKKVDFIEQ-------------FNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSA 318 (396)
Q Consensus 258 etG-~-~l~s--~~~~L~~sk~i~FiE~-------------~~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~~~~PsA 318 (396)
.+. . .... +.|..+=+ .+..-|- -..+|..+--|..++||+--+++ +-++++.|.++.+-
T Consensus 134 ~~~g~w~t~ki~~aH~~Gvn-sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 134 DSSGGWTTSKIVFAHEIGVN-SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred cCCCCccchhhhhccccccc-eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 764 1 1111 11111110 0111111 12568888899999999998863 23368899999998
Q ss_pred EEEeecCeE----EEEEEc-CeEEEEecccc----eeeeecc------ccccCCCCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 319 FIFLYENQL----FLTFRN-RTVAVWNFRGE----LVTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 319 FiFly~~qL----FLTfs~-gti~iWd~~ge----L~t~fed------h~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
.-.-|...| +.+-|- |++-||..+.| -.|.+++ |++| ..++|+.--++-|=-|-.-|.+.+.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW---S~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW---SLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE---eccccEEEEecCCcEEEEEEeCCCC
Confidence 888776655 333333 99999999874 3344444 4444 5666666555555555556777777
Q ss_pred ccccCC
Q 016020 384 QWMEGS 389 (396)
Q Consensus 384 ~~~~~~ 389 (396)
+|.+-+
T Consensus 290 kw~~v~ 295 (299)
T KOG1332|consen 290 KWEEVG 295 (299)
T ss_pred cEEEcc
Confidence 777654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.14 Score=57.60 Aligned_cols=138 Identities=17% Similarity=0.273 Sum_probs=94.5
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
-||- +|+-+.-.+.|-..|||+|.|-.+|=+..+ -++.++.+|..-.+...+ .++.-+.+|.+.+|.++.-+.
T Consensus 197 ~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa--S~D~vIrvWrl~~~~pvsvLr-- 271 (1113)
T KOG0644|consen 197 IFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA--SNDKVIRVWRLPDGAPVSVLR-- 271 (1113)
T ss_pred eecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc--ccCceEEEEecCCCchHHHHh--
Confidence 4777 677666678899999999999999999988 789999998554433444 347889999999999887655
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecc----cccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR----TEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~----t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
.|+.- |+|.+.- .-|.|+.++|||-+=--++-+++ ++....-..+|-..+.-|+|-+. ++-..|.
T Consensus 272 -ghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e 344 (1113)
T KOG0644|consen 272 -GHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE 344 (1113)
T ss_pred -ccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence 66655 7888833 67999999999998222222322 23333334444444444454444 3433333
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=90.18 E-value=20 Score=35.13 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=73.7
Q ss_pred ceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCc-E-----EEEEEeecc--cCCc---cchhhhhcceeeEeecCCee
Q 016020 228 HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT-V-----LKVFYHLLH--RNKK---VDFIEQFNEKLLVKQENENL 295 (396)
Q Consensus 228 ~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~-~-----l~s~~~~L~--~sk~---i~FiE~~~ekLLIKQed~~L 295 (396)
+.-.|... +|.+++...+. --|.++.+.+.+ . ...+.+-++ .++. +.+-+ -++.|++-||..|.
T Consensus 66 D~EgI~y~g~~~~vl~~Er~---~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEERD---QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPK 141 (248)
T ss_dssp SEEEEEE-STTEEEEEETTT---TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSE
T ss_pred CceeEEEECCCEEEEEEcCC---CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCCh
Confidence 33344444 56666555444 245556663321 1 112332233 3332 77777 45556666899999
Q ss_pred eEEEccc---ceEEEe--------cccccCCCceEEEeecCeEEEEEEc--CeEEEEecccceee--eecc--ccccC--
Q 016020 296 QILDVRN---AELMEV--------SRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGELVT--SFED--HLLWH-- 356 (396)
Q Consensus 296 ~I~Dv~~---~ki~~v--------~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~geL~t--~fed--h~l~~-- 356 (396)
.||-+.. +.-..+ .......||+..|-+...-++..|+ +.+-.+|.+|+.+. ++.. |-|+.
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS--
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccccc
Confidence 9998875 222211 2335567999999998777777777 89999999998655 3333 22222
Q ss_pred --CC----CCCCcEEEccCCcEEEE
Q 016020 357 --PD----CNTNNIYITSDQDLIIS 375 (396)
Q Consensus 357 --~~----c~~n~~~it~~qd~ii~ 375 (396)
|. -+++++||++.-.+.-.
T Consensus 222 ~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp -SEEEEEE-TT--EEEEETTTEEEE
T ss_pred CCccEEEECCCCCEEEEcCCceEEE
Confidence 22 67899999998776543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.3 Score=49.91 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=88.2
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
-.+-|+.+-|..-+.+..-- +--++||+||+||-.++|+---.+-.. ++ +...|-||..-=-|.+|-++|-.++
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQ--Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~-lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQ--DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI-LDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ceEEEeeeCCCcceEEEEec--ccceEEEeccccceeeeecccccCCCceEEEE-ECCCccEEEEeecCCceEEEEeccc
Confidence 44555666655544443333 457899999999999999932222111 44 4457888888889999999999999
Q ss_pred eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 304 ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 304 ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
||.-.--+|...+....|++|=.-..+++. |-|-||-+..+
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 999988899999999999999888777776 99999998764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=24 Score=36.44 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=72.3
Q ss_pred EEEEeccCceEEEEec--cCceEEEEEcCC--eEEE-EEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcc
Q 016020 210 YKVFDLKNYTMLYSIS--DKHVQEIKISPG--IMLL-IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (396)
Q Consensus 210 YrVwdlknYs~lysIs--~~~VqEIkiSpg--~~Ll-~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~e 284 (396)
+-+.|..++. .-.|+ .+....=+|||+ -..+ .....++.--+-+.++.+|+...-..+. .......|.+ +|.
T Consensus 167 l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSP-DG~ 243 (428)
T PRK01029 167 LWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSP-RKK 243 (428)
T ss_pred EEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECC-CCC
Confidence 3344554443 22233 355667799987 3222 2233333445777889888765443321 2233466776 888
Q ss_pred eeeEeec-----CCeeeEEEccc---ceEEEecccccCCCceEEEeecCeEEEEEE--cCeEEEEec
Q 016020 285 KLLVKQE-----NENLQILDVRN---AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF 341 (396)
Q Consensus 285 kLLIKQe-----d~~L~I~Dv~~---~ki~~v~~t~~~~PsAFiFly~~qLFLTfs--~gti~iWd~ 341 (396)
+|+.-.+ +--+++||+.+ ++...+.........+..|+++++.++..+ +|...+|..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 8887653 22345577775 344445433333445778999998544444 476777754
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.99 E-value=5.9 Score=46.39 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=73.8
Q ss_pred eeeeEEEEeecCcEEEEEEeecccCC-----ccchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEE
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRNK-----KVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~sk-----~i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFi 320 (396)
+-.++|||.|.-++.++.-. ..+. ..+-. .|+-|+.+=-|+++++||.+.- -.+.+-+.|...+.-..
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~~--~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPY--GSSTLVTALSADLV--HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred eeEEEEEecccceeEeeccc--CCCccceeeccccc--CCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 67899999999888775431 1111 11211 3788889999999999999983 36779999988866333
Q ss_pred Ee----ecCeEEEEEEcCeEEEEeccc-ceeeeecccccc
Q 016020 321 FL----YENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLW 355 (396)
Q Consensus 321 Fl----y~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~ 355 (396)
.. ..++|+=...+|.|.+||.++ ...+-+..-..|
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 22 134677777779999999999 577777777767
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.60 E-value=1.2 Score=48.33 Aligned_cols=216 Identities=15% Similarity=0.168 Sum_probs=135.7
Q ss_pred cccceEEEeec---cchhhhhhccccceeeeccccce-----EEEecCCCCceEEEEeeecCCCe--EEEEEeEec----
Q 016020 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRR-----ICFLNVSPDEVIRSLFYNKNNDS--LITVSVYAS---- 152 (396)
Q Consensus 87 ~RS~V~EIv~a---~dii~~L~~sG~c~af~~~t~~~-----ic~lN~s~~evIrsifyN~~n~s--lI~vSv~~s---- 152 (396)
.+|.|.-+-++ ..+++..+++|--.+||...+.+ +|.+=.++.+-+-.+++.++-.. ++++|.=.+
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 45666665555 67899999999999999888877 78888888887777777655554 777775111
Q ss_pred --CCC------------c------eeeeEeeehhhh-----------hhCCCCCC-----C----cceee--cccCCCCe
Q 016020 153 --DNF------------S------SLKCRSTKIEYI-----------RRGKPDSG-----F----ALFES--ESLKWPGF 190 (396)
Q Consensus 153 --d~~------------s------~L~cr~~~~~~i-----------~~gk~~~~-----~----~LF~~--~~l~~Pgf 190 (396)
|.+ . +..+.++..+.+ ..|++..| + .+|+. ....|+|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 000 0 111222222211 11111110 0 12221 23344444
Q ss_pred ---EEeeCCCCcEEEeecCCCeEEEEecc-CceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 ---VEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 ---VEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
|.+.|---++.++.. |-+.|+|..+ .++.||+... .-|.+++|||..-.++.
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~--------------------- 458 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA--------------------- 458 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE---------------------
Confidence 355555566666666 9999999999 9999988877 44999999987754322
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc-ccCCCceEEEeecCeEEEEEEc--CeEEEEec
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFRN--RTVAVWNF 341 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t-~~~~PsAFiFly~~qLFLTfs~--gti~iWd~ 341 (396)
+.-.+++|.|||++.+..--|..- ...++.--+|....+-+|+.-+ |+|.+|++
T Consensus 459 -----------------------~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 459 -----------------------TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -----------------------EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 333678889999988665443221 1134455566667666666666 99999999
Q ss_pred ccceee
Q 016020 342 RGELVT 347 (396)
Q Consensus 342 ~geL~t 347 (396)
...|..
T Consensus 516 ~~~l~~ 521 (555)
T KOG1587|consen 516 SESLAV 521 (555)
T ss_pred Cchhhc
Confidence 865443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.2 Score=26.05 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=24.4
Q ss_pred ecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
....+.....+..|.++++++++.+. |.+.+||
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 33455556677788887788887776 8999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=88.56 E-value=3.4 Score=46.13 Aligned_cols=151 Identities=9% Similarity=0.232 Sum_probs=105.3
Q ss_pred CeEEee---CCCCcEEEee-----cCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 189 GFVEFD---DVNGKVLTYS-----AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 189 gfVEFD---d~NgkIlt~~-----a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
||==|| ..+|.++|++ .+-+.+++|+-.+.+..+.|.. -.|..++|||+=-+|+.-.. +=..++|.++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR--DRt~sl~~~~ 602 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR--DRTVSLYEVQ 602 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec--CceEEeeeee
Confidence 554443 3368888753 3478899999999999998887 89999999977666666666 5778889987
Q ss_pred cCcEEE-EEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc--eEEE----ecccccCCCceEEEeecC-eE
Q 016020 259 DGTVLK-VFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA--ELME----VSRTEFMTPSAFIFLYEN-QL 327 (396)
Q Consensus 259 tG~~l~-s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~--ki~~----v~~t~~~~PsAFiFly~~-qL 327 (396)
.+.... +|...=.|++= ++|.+ ++.|....+.|+.+++|-+-.. +.++ +.-+...++-+++=+..+ +.
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred cccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence 765544 23322244433 78888 8889999999999999999887 3332 111333444444433222 22
Q ss_pred ---EEEEEcCeEEEEecc
Q 016020 328 ---FLTFRNRTVAVWNFR 342 (396)
Q Consensus 328 ---FLTfs~gti~iWd~~ 342 (396)
=+-+.+|.|.+|.+.
T Consensus 682 ~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ceEEEEecccEEEEEecc
Confidence 455788999999977
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=88.43 E-value=8.4 Score=42.03 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=101.0
Q ss_pred eEEeeCCCCcEE---EeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVL---TYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIl---t~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-|.|...||-.+ .-++.+...-|||-.-...+-.++. |.|-..+|-|---=|+-.--++| +--|+.++|--.+
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H--~~Fw~~~~~~l~k 236 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGH--LYFWTLRGGSLVK 236 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCce--EEEEEccCCceEE
Confidence 345555555433 3345577788999877665544442 55555555432211111111223 4568999988777
Q ss_pred EEEeecccCCc----cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 265 VFYHLLHRNKK----VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 265 s~~~~L~~sk~----i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.-...=.+.|+ ++|.| |.-.+.+--|++|.||+.++.++.+.--+|.--.-+..-+.++.|.=-=+||.|..||
T Consensus 237 ~~~~fek~ekk~Vl~v~F~e--ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLE--NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD 314 (626)
T ss_pred EeeccccccceEEEEEEEcC--CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc
Confidence 65544466666 89999 7778899999999999999999998655888888888889999887766779999999
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.1 Score=29.76 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=28.6
Q ss_pred CcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEE
Q 016020 260 GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILD 299 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~D 299 (396)
|+.+..+. +|+.. |.|.+ .+..|+....|+.|++||
T Consensus 1 g~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 45566666 55555 77888 599999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.45 E-value=15 Score=38.58 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=113.0
Q ss_pred EEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccc
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~ 277 (396)
++.+-....=||+|...+....++... .-|-|+=+|..++.++..+.. --||++..-.+..+-+..+. +.=-.|.
T Consensus 18 ~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qp--r~Lkv~~~Kk~~~ICe~~fp-t~IL~Vr 94 (391)
T KOG2110|consen 18 TLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQP--RKLKVVHFKKKTTICEIFFP-TSILAVR 94 (391)
T ss_pred eEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCC--ceEEEEEcccCceEEEEecC-CceEEEE
Confidence 333344555699999999988887766 567899999999999988542 55888888888887765532 1111122
Q ss_pred hhhhhcc-eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee--cCeEEEEEE----cCeEEEEeccc-ceeeee
Q 016020 278 FIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY--ENQLFLTFR----NRTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 278 FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly--~~qLFLTfs----~gti~iWd~~g-eL~t~f 349 (396)
+|- -|++==|+ .|-|||+.+=|++++-.+.-..|.....+- ..+=+|++- .|.|-+||+.- +-++.+
T Consensus 95 ----mNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 95 ----MNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred ----EccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 222 23333333 499999999999998777755666444432 222244443 48999999988 788888
Q ss_pred ccccccCC---CCCCCcEEEccC-Cc-EEEEeccCCC
Q 016020 350 EDHLLWHP---DCNTNNIYITSD-QD-LIISYCKAEP 381 (396)
Q Consensus 350 edh~l~~~---~c~~n~~~it~~-qd-~ii~~~~~~~ 381 (396)
+-|-.... .-++++..-|+. +- +|=.||-+++
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 88765432 266777666543 22 4445555443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.66 E-value=38 Score=37.18 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=101.9
Q ss_pred cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 235 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 235 Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
|.+..+++...+ ...+-++++-.|+....+.--=|...- ..-.-|.-..|+.-.-|.-+-.|+....++++.-....
T Consensus 67 s~~t~~lvlgt~--~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 67 SLDTSMLVLGTP--QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred cCCceEEEeecC--CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC
Confidence 455555555554 466778888888888766521122111 22234566778888899999999999999999999999
Q ss_pred CCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccccccCCC---CC-----CCcEEEccC-CcEEEEeccCCC
Q 016020 314 MTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHPD---CN-----TNNIYITSD-QDLIISYCKAEP 381 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~~~~---c~-----~n~~~it~~-qd~ii~~~~~~~ 381 (396)
-.|+...-++++...++ -+|+|++||..- +++-.|++|...+.- .- .+.+++|.+ -+-+|..|+-+.
T Consensus 145 ~~~~sl~is~D~~~l~~-as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLT-ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CccceEEEcCCCCEEEe-ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999999665554 569999999998 899999999987543 11 134555443 345566666554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.8 Score=47.86 Aligned_cols=183 Identities=18% Similarity=0.231 Sum_probs=97.6
Q ss_pred cceEEEeeccchhhhhhcccc--ceeeeccccceEE-EecCCCCceEEEEeeecCCCeEEEEEeEecCCCcee--eeEee
Q 016020 89 TKVIEIVAARDIVFALAHSGV--CAAFSRETNRRIC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL--KCRST 163 (396)
Q Consensus 89 S~V~EIv~a~dii~~L~~sG~--c~af~~~t~~~ic-~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L--~cr~~ 163 (396)
-.|.++.-|.-=-..+..+|= ...||..+++..= -+|..+.-=|+|+=+-+.|-.+.. ...-|+..| -||..
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~---tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC---TGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCccee---eccCCCcEEEEEEecc
Confidence 345566555433344556664 4457777766544 378888888888877765544433 223332322 23333
Q ss_pred e---hh------hhhh-CCCCCCC--------cceeecccCC-CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe
Q 016020 164 K---IE------YIRR-GKPDSGF--------ALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 224 (396)
Q Consensus 164 ~---~~------~i~~-gk~~~~~--------~LF~~~~l~~-PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI 224 (396)
. .| |+.. |-+-... .+.-...+.. =--|-|=| +.-++++++.|+.+|||||+.-...|.-
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeeccccccccc
Confidence 2 11 1111 1000001 1111111110 00233444 5678888888999999999988888875
Q ss_pred ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 225 SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 225 s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
.- .++.= +|-+ ..+-.+-.++.|-+ +|.||+.-=-|.+|-.||+++-.
T Consensus 257 ep---------~~~~~---------~~t~-----skrs~G~~nL~lDs---------sGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 257 EP---------RGSDK---------YPTH-----SKRSVGQVNLILDS---------SGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred CC---------CcccC---------ccCc-----ccceeeeEEEEecC---------CCCeEEEEecCCcEEEEeccccC
Confidence 51 11110 0000 11222222333333 78999999999999999999866
Q ss_pred EEE
Q 016020 305 LME 307 (396)
Q Consensus 305 i~~ 307 (396)
+.-
T Consensus 305 ~sP 307 (720)
T KOG0321|consen 305 ISP 307 (720)
T ss_pred cCc
Confidence 553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=44 Score=34.61 Aligned_cols=147 Identities=9% Similarity=0.104 Sum_probs=88.1
Q ss_pred eEEeeCCCCc-EEEeecC---CCeEEEEeccCce--EEEEeccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcE
Q 016020 190 FVEFDDVNGK-VLTYSAQ---DSIYKVFDLKNYT--MLYSISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 190 fVEFDd~Ngk-Ilt~~a~---d~~YrVwdlknYs--~lysIs~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
+..|.+ +|+ +++|.+. +..+-++|+.+.+ .|.. .......-.|||+ -.|++.......--+-++++.+|+.
T Consensus 192 ~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 192 FPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred eEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 345566 465 5666433 3567778998876 4443 2234556789965 3455544444445566778877764
Q ss_pred EEEEEeecccCCccchhhhhcceeeEeecC---CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc------
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN------ 333 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~------ 333 (396)
..-+... ...-...|.+ +|++|+.-.+. ..|-++|+.+++..++..... ....++++++..+..+.
T Consensus 270 ~~LT~~~-~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 270 TQITNYP-GIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEcccCC-CccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCccc
Confidence 3322211 1223467888 89999888732 257777998888877643221 12478998887554443
Q ss_pred --C--eEEEEeccc
Q 016020 334 --R--TVAVWNFRG 343 (396)
Q Consensus 334 --g--ti~iWd~~g 343 (396)
+ .|.+.|++|
T Consensus 345 ~~~~~~I~v~d~~~ 358 (419)
T PRK04043 345 GKNTFNLYLISTNS 358 (419)
T ss_pred CCCCcEEEEEECCC
Confidence 2 456667766
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.20 E-value=46 Score=34.62 Aligned_cols=185 Identities=12% Similarity=0.189 Sum_probs=107.1
Q ss_pred eEecCCCceeeeEeeehhh-hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-
Q 016020 149 VYASDNFSSLKCRSTKIEY-IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD- 226 (396)
Q Consensus 149 v~~sd~~s~L~cr~~~~~~-i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~- 226 (396)
|...++|--.+|... .. ..+..-+.| ++-.++|-.--|.-+=..+++ -.. +.+-..|||=.-+.++-+++=
T Consensus 22 va~~~Gfriyn~~P~--ke~~~r~~~~~G--~~~veMLfR~N~laLVGGg~~--pky-~pNkviIWDD~k~~~i~el~f~ 94 (346)
T KOG2111|consen 22 VATDTGFRIYNCDPF--KESASRQFIDGG--FKIVEMLFRSNYLALVGGGSR--PKY-PPNKVIIWDDLKERCIIELSFN 94 (346)
T ss_pred EEecCceEEEecCch--hhhhhhccccCc--hhhhhHhhhhceEEEecCCCC--CCC-CCceEEEEecccCcEEEEEEec
Confidence 555666666666652 12 122222344 444455544444333332222 011 246689999666668888876
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEee-cCcEEEEEEeecccCCc---cchhhhhcceeeE--eecCCeeeEEEc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLV--KQENENLQILDV 300 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie-tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLI--KQed~~L~I~Dv 300 (396)
.+|..|+++++..+.+.... +.+|.-. +=+.+..+. .+.++ +..-+..+..+|. +-.-+.+||.|+
T Consensus 95 ~~I~~V~l~r~riVvvl~~~-----I~VytF~~n~k~l~~~e---t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENK-----IYVYTFPDNPKLLHVIE---TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred cceeeEEEcCCeEEEEecCe-----EEEEEcCCChhheeeee---cccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 89999999988876554433 3334333 222222222 22211 2222212222222 224588999999
Q ss_pred ccceE--EEecccccCCCceEEEeecCeEEEEEEc-C-eEEEEeccc-ceeee
Q 016020 301 RNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFRN-R-TVAVWNFRG-ELVTS 348 (396)
Q Consensus 301 ~~~ki--~~v~~t~~~~PsAFiFly~~qLFLTfs~-g-ti~iWd~~g-eL~t~ 348 (396)
..-+. ..+-++|.-..+++--.-+|.+.-|.|- | .|+|||++. +++--
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 99877 2455688888888777788999989888 4 799999976 55443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.76 E-value=0.8 Score=55.54 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=89.8
Q ss_pred CCeEEEEeccCceEEEEecc----------CceEEEEEcCCeEEEEEecCCCeeeeEEEEe--ecCcEEEEEEeecccCC
Q 016020 207 DSIYKVFDLKNYTMLYSISD----------KHVQEIKISPGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~----------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I--etG~~l~s~~~~L~~sk 274 (396)
.+.+-+=|-.++=.+++++. +...|++|=. +.++..+......-+.+||- -.+.-+...+|+ +..-
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~-~gaT 2340 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD-GGAT 2340 (2439)
T ss_pred CCceeeeccCCceeecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecC-CCce
Confidence 33344444455556666653 6677888766 66777777766666666662 223333334432 2233
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeee
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~f 349 (396)
.+.|.+ -.+-|+.+-.++-+.+||++-+++++.=.. +.+..+|++-+. |.|+||++.+ .|.-+|
T Consensus 2341 ~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2341 VLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LDTREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh----------hhhhheeeccCcccceEEEEccccchhhcC
Confidence 477888 678899999999999999999999975332 668999999999 9999999998 655444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=85.42 E-value=30 Score=31.87 Aligned_cols=146 Identities=11% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE-EEeccCceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l-ysIs~~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
|.=+-||+.+|.....+...+.+..||..+.+.. +..++ ..-+.+. ++-.|++..... +.++|..+|+...-
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~----~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGG----IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTC----EEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCc----eEEEecCCCcEEEE
Confidence 3445678778888888888887777888877643 44444 6666666 444444544432 35559999977665
Q ss_pred EEe-----ecccCCccchhhhhcceeeEeecC---------CeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEE
Q 016020 266 FYH-----LLHRNKKVDFIEQFNEKLLVKQEN---------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLT 330 (396)
Q Consensus 266 ~~~-----~L~~sk~i~FiE~~~ekLLIKQed---------~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLT 330 (396)
+.. .+.+-+++.+-+ .|. |++..-+ +.|-.+|.. +++..+ .+....|-...|.++++ ||++
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~-~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP-DGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T-TS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEE
T ss_pred eeccCCCcccCCCceEEEcC-CCC-EEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeec
Confidence 554 234444566666 455 6666533 235555655 565554 45577899999999986 6666
Q ss_pred EEc-CeEEEEeccc
Q 016020 331 FRN-RTVAVWNFRG 343 (396)
Q Consensus 331 fs~-gti~iWd~~g 343 (396)
=+. +.|-.++.+.
T Consensus 152 ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 152 DSFNGRIWRFDLDA 165 (246)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ccccceeEEEeccc
Confidence 666 7888888864
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.34 E-value=5 Score=43.87 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=110.0
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEE---cCCeEEEEEecCCCeeee--------------
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKI---SPGIMLLIFNRSSSHVPL-------------- 252 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIki---Spg~~Ll~~q~~~~~ipl-------------- 252 (396)
-|-|+- |-+...+++. ..|=-|.|.+.++.= ..|..||| +++.+|..+...+.+.+-
T Consensus 189 lIGf~t--Gqvq~idp~~--~~~sklfne~r~i~k--tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 189 LIGFTT--GQVQLIDPIN--FEVSKLFNEERLINK--SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred EEeecc--CceEEecchh--hHHHHhhhhcccccc--cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 344543 6666666665 222233444433322 33444444 455666655555433331
Q ss_pred ----EEEEeecCcEEEEEE------eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEe
Q 016020 253 ----KILSIEDGTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (396)
Q Consensus 253 ----kIl~IetG~~l~s~~------~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl 322 (396)
..|.|.+++--+.-+ +--..-++..|.. +|.+|..=.+|+-|+|+|-.+.+++-+-+.+|--=-+.-.+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 134555544443311 1011223477899 99999999999999999999999999999998888888899
Q ss_pred ecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC
Q 016020 323 YENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD 358 (396)
Q Consensus 323 y~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~ 358 (396)
+|+.+.+|=-. ..|.||.|.- .+|+.=++|-+|+..
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999766 8999999988 588899999999887
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.86 E-value=2.5 Score=40.13 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=56.4
Q ss_pred CccchhhhhcceeeEeecCCeeeEEEcccceEEEec-------c-------cccCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------R-------TEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-------~-------t~~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
.++-|++..+++|++=.+++.+.+||+.++++..-+ . +.......+....+|-..++++||..=.|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y 92 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSY 92 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEe
Confidence 467889999999999999999999999999987632 1 23333444555668888999999998888
Q ss_pred ecccc
Q 016020 340 NFRGE 344 (396)
Q Consensus 340 d~~ge 344 (396)
|.+-.
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 88774
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=84.58 E-value=56 Score=34.23 Aligned_cols=248 Identities=13% Similarity=0.141 Sum_probs=132.2
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCc-----eEEE-EeeecCCCeEEEEEeEecCC-----CceeeeEeeehhh
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-----VIRS-LFYNKNNDSLITVSVYASDN-----FSSLKCRSTKIEY 167 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e-----vIrs-ifyN~~n~slI~vSv~~sd~-----~s~L~cr~~~~~~ 167 (396)
+.|++-+..|...|+|..||+.+-..+..+.. +--+ ++++ +.+++.| ...+. ...|.|--
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~---~~v~vg~-~~~~~~~~~~~g~v~alD----- 181 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK---KLVIIGS-SGAEFFACGVRGALRAYD----- 181 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC---CEEEEec-cccccccCCCCcEEEEEE-----
Confidence 78888889999999999999999887766542 1112 2232 3333322 11111 12232221
Q ss_pred hhhCCCCCCCcceeeccc-----------------------CCCCeEEeeCCCCcEEEeecC-----------------C
Q 016020 168 IRRGKPDSGFALFESESL-----------------------KWPGFVEFDDVNGKVLTYSAQ-----------------D 207 (396)
Q Consensus 168 i~~gk~~~~~~LF~~~~l-----------------------~~PgfVEFDd~NgkIlt~~a~-----------------d 207 (396)
..-| ..+...... .|. -.=+|+.+|.++.-... +
T Consensus 182 ~~TG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 182 VETG-----KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred CCCC-----ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 1222 223322111 111 13456556767665432 2
Q ss_pred CeEEEEeccCceEEEEecc--CceE-----------EEE-EcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 208 SIYKVFDLKNYTMLYSISD--KHVQ-----------EIK-ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 208 ~~YrVwdlknYs~lysIs~--~~Vq-----------EIk-iSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
+.+--+|++|.+.+.+... .+.+ ++. +..+-.-+++.... .--+.-||.+||+.+-+.... .
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~~---~ 331 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPEV---E 331 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEee---c
Confidence 3677788888888877542 2222 111 11111112222221 234778999999999876532 1
Q ss_pred CccchhhhhcceeeE------------------eecCCeeeEEEcccceEEEecccc---------cCCCceEEEeecCe
Q 016020 274 KKVDFIEQFNEKLLV------------------KQENENLQILDVRNAELMEVSRTE---------FMTPSAFIFLYENQ 326 (396)
Q Consensus 274 k~i~FiE~~~ekLLI------------------KQed~~L~I~Dv~~~ki~~v~~t~---------~~~PsAFiFly~~q 326 (396)
..+...+ ..+++ +..+..|..+|+.+++.+=.-+.. .....+-....++-
T Consensus 332 ~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 332 QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1111111 33444 345678999999999887643322 00111223345677
Q ss_pred EEEEEEcCeEEEEecc-cceeeeec--cccccCCC--CCCCcEEEcc
Q 016020 327 LFLTFRNRTVAVWNFR-GELVTSFE--DHLLWHPD--CNTNNIYITS 368 (396)
Q Consensus 327 LFLTfs~gti~iWd~~-geL~t~fe--dh~l~~~~--c~~n~~~it~ 368 (396)
+|+.-.+|.+-.+|.+ |+++-+++ ..+.-.|- -.++++||..
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEE
Confidence 7887778999999974 47665443 33333333 2377888754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.50 E-value=32 Score=39.27 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=100.9
Q ss_pred EEeeCCCCcEEE--eecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEE---EEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIML---LIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt--~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~L---l~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+++++-+..+.. .+++||.++|||..+.+++..++. -.+....+.|-.+- .++-.....--+.-+.-+.++..+
T Consensus 63 ~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~ 142 (792)
T KOG1963|consen 63 VIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSS 142 (792)
T ss_pred eeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeeccccccccee
Confidence 344444443333 678999999999999999988875 33443333311110 111111111112222244455555
Q ss_pred EEEeecccCCccchhhhh--cceeeEeecC--------CeeeEEEcccceEEE-----ecccccCCCceEEEeecCeEEE
Q 016020 265 VFYHLLHRNKKVDFIEQF--NEKLLVKQEN--------ENLQILDVRNAELME-----VSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~--~ekLLIKQed--------~~L~I~Dv~~~ki~~-----v~~t~~~~PsAFiFly~~qLFL 329 (396)
.+...--...+.||+-++ .+-|+.-+.+ ..+-||++.+++ .+ +...|.+...++-+.|.+....
T Consensus 143 ~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~A 221 (792)
T KOG1963|consen 143 RFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLA 221 (792)
T ss_pred eeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEE
Confidence 544333444557777766 5666666644 467789998865 22 4455666667777777666555
Q ss_pred EEEc-CeEEEEeccc-ceeeeeccccccCCC-------CCCCcEEEccCCc
Q 016020 330 TFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD-------CNTNNIYITSDQD 371 (396)
Q Consensus 330 Tfs~-gti~iWd~~g-eL~t~fedh~l~~~~-------c~~n~~~it~~qd 371 (396)
+--. |.|.+|.=-| +...---.-+=||-+ ..++.+..|+.+.
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc
Confidence 4433 9999998777 433322233447755 4555555555443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.14 E-value=1.4 Score=47.15 Aligned_cols=144 Identities=22% Similarity=0.357 Sum_probs=96.8
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEE------EEeEecCCCceeeeEeeehh--------
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT------VSVYASDNFSSLKCRSTKIE-------- 166 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~------vSv~~sd~~s~L~cr~~~~~-------- 166 (396)
+++--..|--||||-.|++++|+||.. |-||.+=|=. |+.+|- |=+|..++ .-|+|--.-++
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LH-neq~~AVAQK~y~yvYD~~G-tElHClk~~~~v~rLeFLP 219 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLH-NEQFFAVAQKKYVYVYDNNG-TELHCLKRHIRVARLEFLP 219 (545)
T ss_pred EEecCCccceeeeecccceeeeeeehh--hhhhhhhhhc-chHHHHhhhhceEEEecCCC-cEEeehhhcCchhhhcccc
Confidence 445567789999999999999999974 5666653322 233321 12677777 77887432222
Q ss_pred -----------------hhhhCCC------CCCC-ccee---------------e-------------cccCCCC---eE
Q 016020 167 -----------------YIRRGKP------DSGF-ALFE---------------S-------------ESLKWPG---FV 191 (396)
Q Consensus 167 -----------------~i~~gk~------~~~~-~LF~---------------~-------------~~l~~Pg---fV 191 (396)
|+--|++ ..|. -.|. + -.|.|+| -+
T Consensus 220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 1122222 0111 0111 1 2345555 46
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCe
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSH 249 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~ 249 (396)
.+|+ +|.-.+-...|...||||++++.++-++.- -.++.+.+|.--||.+..+++-+
T Consensus 300 Av~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~ 357 (545)
T KOG1272|consen 300 AVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQ 357 (545)
T ss_pred EECC-CCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeee
Confidence 8888 899999999999999999999998888876 78899999999999888888533
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.10 E-value=26 Score=35.96 Aligned_cols=144 Identities=16% Similarity=0.085 Sum_probs=96.8
Q ss_pred cCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc----cch
Q 016020 205 AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK----VDF 278 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~----i~F 278 (396)
+.|.+.|+++|...+.=+.+-- .++-...+||+=-++..-.....+++-=+|=+.-..+. ..++++.+ .-|
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSF 211 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeee
Confidence 5677777777776663332222 34667788887777777777777776555443333333 22355544 666
Q ss_pred hhhhcceeeEeecCCeeeEEEccc-----ceEEEecccccCCCceEEEeecCeE-EEEEEc--CeEEEEeccc----cee
Q 016020 279 IEQFNEKLLVKQENENLQILDVRN-----AELMEVSRTEFMTPSAFIFLYENQL-FLTFRN--RTVAVWNFRG----ELV 346 (396)
Q Consensus 279 iE~~~ekLLIKQed~~L~I~Dv~~-----~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~--gti~iWd~~g----eL~ 346 (396)
.| -++...+.--|+.+-||||++ .++....+.|.-..+.-.|.+.|-| .|-++. +.+.+-|++- |++
T Consensus 212 s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 212 SE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 76 777888888899999999998 3444466667777788889866665 666666 5777777664 688
Q ss_pred eeeccc
Q 016020 347 TSFEDH 352 (396)
Q Consensus 347 t~fedh 352 (396)
.-+||.
T Consensus 291 ~i~~d~ 296 (344)
T KOG4532|consen 291 VIPDDV 296 (344)
T ss_pred ecCccc
Confidence 877776
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.92 E-value=2.7 Score=45.70 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=66.4
Q ss_pred eeeeEEEEeecC--------cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc----------ceEEE
Q 016020 249 HVPLKILSIEDG--------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN----------AELME 307 (396)
Q Consensus 249 ~iplkIl~IetG--------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~----------~ki~~ 307 (396)
.-.||+|.+|+. +++.+|. +|..+ +...+ -++.++.+-.|++|++|++-. .-+..
T Consensus 315 d~~lk~WnLqk~~~s~~~~~epi~tfr---aH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 315 DGTLKLWNLQKAKKSAEKDVEPILTFR---AHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred ccchhhhhhcccCCccccceeeeEEEe---cccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 356888988552 3344555 77788 66444 899999999999999994421 12333
Q ss_pred ecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
+.-+|++....+-++..++-.|+.|. ||+..|+-.++
T Consensus 391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred ceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 45588888888887777766666654 99999998884
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=83.12 E-value=61 Score=33.58 Aligned_cols=142 Identities=9% Similarity=0.039 Sum_probs=80.3
Q ss_pred CcEEEeecCCC--eEEEE--eccCce-EEEEeccCceEEEEEcCCeE-EEEEecCC-CeeeeEEEEeecCcEEEEEEeec
Q 016020 198 GKVLTYSAQDS--IYKVF--DLKNYT-MLYSISDKHVQEIKISPGIM-LLIFNRSS-SHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 198 gkIlt~~a~d~--~YrVw--dlknYs-~lysIs~~~VqEIkiSpg~~-Ll~~q~~~-~~iplkIl~IetG~~l~s~~~~L 270 (396)
.||+..+...+ .+++| |...+. ..+.-++ ....-+|||+-- ++++.... ..--+-++++.+|+...-+.. -
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~ 232 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-Q 232 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-C
Confidence 35555554322 45555 333343 3333333 567889997542 33432222 234577889999987654331 0
Q ss_pred ccCCccchhhhhcceeeEee---cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--C--eEEEEeccc
Q 016020 271 HRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFRG 343 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQ---ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--g--ti~iWd~~g 343 (396)
.......|.+ .|.+|++-. .+..|-++|+.+++...+....... ..-.|+++++-++-.|+ | -|-++|++|
T Consensus 233 g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 233 GMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCcc-CccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 2222366777 888887654 2345677799999888764433211 12359998865444444 3 566677776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.9 Score=46.92 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEeccCceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEc
Q 016020 222 YSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (396)
Q Consensus 222 ysIs~~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv 300 (396)
+.|...-+.++.+| +|-+|+.-... .-|+||+-.+=+.+.-++.-.+---=|...+ +|.||+++-||.-+.+|.+
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqD---GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQD---GFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecC---ceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEe
Confidence 45555678888888 45666554444 7899999988666654432111112266677 9999999999999999999
Q ss_pred ccceEEEecccccCCCceEEEee
Q 016020 301 RNAELMEVSRTEFMTPSAFIFLY 323 (396)
Q Consensus 301 ~~~ki~~v~~t~~~~PsAFiFly 323 (396)
.-++.+.=-.+|.-|+++..|-+
T Consensus 362 ~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccceEEEeccccccceeeEeecc
Confidence 99999998899999999999963
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.94 E-value=1.7 Score=50.12 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=103.6
Q ss_pred ceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCC-cEEEeecC--
Q 016020 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG-KVLTYSAQ-- 206 (396)
Q Consensus 130 evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~Ng-kIlt~~a~-- 206 (396)
|=|++|=.|+.. +=|..|+..+-. +.+=|||+.|+.-... ++..=.+=--+++.+-+. .+++++-.
T Consensus 162 ~eI~~lsWNrkv-qhILAS~s~sg~--------~~iWDlr~~~pii~ls--~~~~~~~~S~l~WhP~~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 162 SEIKCLSWNRKV-SHILASGSPSGR--------AVIWDLRKKKPIIKLS--DTPGRMHCSVLAWHPDHATQLLVASGDDS 230 (1049)
T ss_pred ccceEeccchhh-hHHhhccCCCCC--------ceeccccCCCcccccc--cCCCccceeeeeeCCCCceeeeeecCCCC
Confidence 356777777543 344555543322 3345676654311100 000001011344444332 33443333
Q ss_pred CCeEEEEeccCce---EEEEeccCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc---CCccchh
Q 016020 207 DSIYKVFDLKNYT---MLYSISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR---NKKVDFI 279 (396)
Q Consensus 207 d~~YrVwdlknYs---~lysIs~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~---sk~i~Fi 279 (396)
.-++..|||++-+ .+|+.-...|-.+-|++-= .||++... +..+.+|+.+|||.++++- .+ -.+++|-
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk--D~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK--DNRIICWNPNTGEVLGELP---AQGNWCFDVQWC 305 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC--CCCeeEecCCCceEeeecC---CCCcceeeeeec
Confidence 4589999999887 7777777999999999533 55566655 6788999999999999865 22 2359999
Q ss_pred hhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 280 EQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 280 E~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
+..-.-+-+...++.+.||.+.+.....
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred CCCcchhhhheeccceeeeeeecCCccc
Confidence 9888999999999999999998866433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.70 E-value=2.9 Score=45.91 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=71.2
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCceEEEeecC--eEEEEEEc-CeEEEEeccc--------
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYEN--QLFLTFRN-RTVAVWNFRG-------- 343 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~--qLFLTfs~-gti~iWd~~g-------- 343 (396)
++..+ .|+.|+.+.+|..|.|||....|+++ +.-+|..-.-+.=|+|+. ++.+|-.- -.|+++|++.
T Consensus 56 LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~ 134 (758)
T KOG1310|consen 56 LEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH 134 (758)
T ss_pred eeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc
Confidence 45555 89999999999999999999999988 666776666677778854 44555444 6999999983
Q ss_pred --c-eeeeeccccccCCC---CCCC-cEEEccCCcEEEE
Q 016020 344 --E-LVTSFEDHLLWHPD---CNTN-NIYITSDQDLIIS 375 (396)
Q Consensus 344 --e-L~t~fedh~l~~~~---c~~n-~~~it~~qd~ii~ 375 (396)
+ -...+..|.--+-. |+++ +.|.++.+|=.|-
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 1 22244555444433 7777 8888888876553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=82.22 E-value=59 Score=35.80 Aligned_cols=131 Identities=17% Similarity=0.316 Sum_probs=82.2
Q ss_pred cccCCCCeEEee----CCCCcEEEeecCCC-eEEEEeccCceEEEEecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEE
Q 016020 183 ESLKWPGFVEFD----DVNGKVLTYSAQDS-IYKVFDLKNYTMLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 183 ~~l~~PgfVEFD----d~NgkIlt~~a~d~-~YrVwdlknYs~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl 255 (396)
..+.+||=|.+- +.++-+++ -.|+ ..-|+|+.+.+.-.-..+ -+|-.+++|++ -.+++.+- -..|.+.
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vig--t~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vi 428 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIG--TNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVI 428 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEe--ccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEE
Confidence 345566655542 22333333 3344 788999988876555555 78999999976 54555443 4889999
Q ss_pred EeecCcEEEE--------EEeecccCCc-cchhhhhcceeeEeecCCeeeEEEcccceEEE--ecccccCCCceEEEeec
Q 016020 256 SIEDGTVLKV--------FYHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYE 324 (396)
Q Consensus 256 ~IetG~~l~s--------~~~~L~~sk~-i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~--v~~t~~~~PsAFiFly~ 324 (396)
||+||....- +.+-.|.+.+ +.+-=. +-.+ -++|++||+.++|++. ++.++++.|+ |-++
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP--~gy~----tq~Iklydm~~~Kiy~vTT~ta~DfsPa---FD~d 499 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP--EGYY----TQSIKLYDMDGGKIYDVTTPTAYDFSPA---FDPD 499 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecC--ccee----eeeEEEEecCCCeEEEecCCcccccCcc---cCCC
Confidence 9999998761 2233455444 332221 1111 2689999999999998 4555666664 5556
Q ss_pred CeE
Q 016020 325 NQL 327 (396)
Q Consensus 325 ~qL 327 (396)
+..
T Consensus 500 ~ry 502 (668)
T COG4946 500 GRY 502 (668)
T ss_pred CcE
Confidence 655
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=82.18 E-value=74 Score=35.11 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=115.0
Q ss_pred CCeEEEEeccCceEEEEe------ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc-cchh
Q 016020 207 DSIYKVFDLKNYTMLYSI------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK-VDFI 279 (396)
Q Consensus 207 d~~YrVwdlknYs~lysI------s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~-i~Fi 279 (396)
.+++-+|++++.++...- +.+.|+++.|.++=-++.-.+. .-+.||+.-+-+..+... .|.+- -.-.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~---G~i~Iw~~~~~~~~k~~~---aH~ggv~~L~ 294 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG---GNILIWSKGTNRISKQVH---AHDGGVFSLC 294 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC---ceEEEEeCCCceEEeEee---ecCCceEEEE
Confidence 789999999999976543 2388999999976655444333 556677764433333222 33333 1222
Q ss_pred hhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc--ceeeeeccccccCC
Q 016020 280 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG--ELVTSFEDHLLWHP 357 (396)
Q Consensus 280 E~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g--eL~t~fedh~l~~~ 357 (396)
-.-+..||.+-+|--|-.||=.=+++.++.-++.+-|---|.=-.+.+++--+.+.|.-=+++. ++++.-+...||..
T Consensus 295 ~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl 374 (626)
T KOG2106|consen 295 MLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL 374 (626)
T ss_pred EecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE
Confidence 2346788899999999999944477766543333333333443445577777777887777777 58888888999977
Q ss_pred C-CCCCcEEEccCCcEEEEeccCCCCCccc
Q 016020 358 D-CNTNNIYITSDQDLIISYCKAEPEDQWM 386 (396)
Q Consensus 358 ~-c~~n~~~it~~qd~ii~~~~~~~~~~~~ 386 (396)
- -|..+.|+|..||=-+.--+ +..-.|+
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~-~~k~~wt 403 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN-DHKLEWT 403 (626)
T ss_pred EcCCChhheeeccCcceEEEcc-CCceeEE
Confidence 6 77888999999998777665 3333443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.02 E-value=12 Score=39.50 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.+|..+.++| ||+-++- ..|+.|-+.......--- . ..-.++.|++.--.++.... + .++|+.=.+++..++
T Consensus 33 ~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~--~-G~g~~~vw~~~n~yAv~~~~-~--~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKA--F-GSGLSFVWSSRNRYAVLESS-S--TIKIYKNFKNEVVKS 104 (443)
T ss_dssp S--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEE--E-EE-SEEEE-TSSEEEEE-TT-S---EEEEETTEE-TT--
T ss_pred cCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcccc--c-CceeEEEEecCccEEEEECC-C--eEEEEEcCccccceE
Confidence 3599999999 8988887 557888877733222111 1 22233444443333344432 2 233331112222223
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCC-CceEEEeecCeEEEEEEcCeEEEEecccc
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~-PsAFiFly~~qLFLTfs~gti~iWd~~ge 344 (396)
+. ++.+ --..|+..||.-..++.|.+||+.+++++.- ...+ ++..+.+.++++..-+++.+|-|++.+.+
T Consensus 105 i~--~~~~----~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~---i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 105 IK--LPFS----VEKIFGGNLLGVKSSDFICFYDWETGKLIRR---IDVSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -----SS-----EEEEE-SSSEEEEETTEEEEE-TTT--EEEE---ESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred Ec--CCcc----cceEEcCcEEEEECCCCEEEEEhhHcceeeE---EecCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 33 1111 0123556666666777999999999988763 2233 48888899999988888899999888777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.87 E-value=15 Score=38.34 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=54.1
Q ss_pred cchhhhhcceeeEeecCCeeeEEEcccc-------eEEE---ecc------cccCCCceEEEeecCeEEEEEEcCeEEEE
Q 016020 276 VDFIEQFNEKLLVKQENENLQILDVRNA-------ELME---VSR------TEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (396)
Q Consensus 276 i~FiE~~~ekLLIKQed~~L~I~Dv~~~-------ki~~---v~~------t~~~~PsAFiFly~~qLFLTfs~gti~iW 339 (396)
-+|-++...-++--.-.+.|++-|++-+ ++.+ -+. +.--..+-|-|++.+.+.++=+.-|++||
T Consensus 227 aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiw 306 (460)
T COG5170 227 AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIW 306 (460)
T ss_pred cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEE
Confidence 4688888888888888899999999932 2221 111 11235688999999999999988999999
Q ss_pred ecccc---eee
Q 016020 340 NFRGE---LVT 347 (396)
Q Consensus 340 d~~ge---L~t 347 (396)
|.+-+ ++|
T Consensus 307 Dvnm~k~pikT 317 (460)
T COG5170 307 DVNMAKNPIKT 317 (460)
T ss_pred ecccccCCcee
Confidence 99984 555
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.93 E-value=27 Score=38.84 Aligned_cols=184 Identities=10% Similarity=0.177 Sum_probs=130.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEE--EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~l--ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+-++-.|--++...+....|| ++|.-+-+| |++....+..|-+++-+.|+...... ..+--||--+....+++..
T Consensus 139 m~y~~~scDly~~gsg~evYR-lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~--g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYR-LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED--GVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccCCCccEEEeecCcceEE-EEccccccccccccccccceeeeecCccceEEecccC--ceEEEecchhhhhheeeec
Confidence 345566677777777788888 588888877 56666899999999999999888874 4456688777777776663
Q ss_pred ecc----cC-------CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccc-cCCCceEEEeec--CeEEEEEEcC
Q 016020 269 LLH----RN-------KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYE--NQLFLTFRNR 334 (396)
Q Consensus 269 ~L~----~s-------k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~-~~~PsAFiFly~--~qLFLTfs~g 334 (396)
-.+ +. .-+.|.- .|=-+-++--.+.+-|||+++++-+-+.+-. -++...+.|.+. ..-.+|.-..
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR 294 (703)
T ss_pred ccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchH
Confidence 222 00 1155555 3667889999999999999998877765544 455566777665 4567777779
Q ss_pred eEEEEecc-cceeeeeccccccCCC---CCCCcEEEccCCcEEEEecc
Q 016020 335 TVAVWNFR-GELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 335 ti~iWd~~-geL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~ 378 (396)
.++|||-. |...++.|--.....+ |.++-+|.+.+--.+-.|+=
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 99999966 5788888876665555 55666666666555655543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=80.82 E-value=2.9 Score=43.77 Aligned_cols=171 Identities=16% Similarity=0.268 Sum_probs=95.4
Q ss_pred CCcEEEeecCCCeEEE--EeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeE----EEEeecCcEEEEEEee
Q 016020 197 NGKVLTYSAQDSIYKV--FDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLK----ILSIEDGTVLKVFYHL 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrV--wdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplk----Il~IetG~~l~s~~~~ 269 (396)
..+++..+..+..|.+ |..--+.+.=.+-+ --+.+|.+||+-..+++.-...+|-+. .++|+ + +.
T Consensus 119 ~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie------s--fc 190 (390)
T KOG3914|consen 119 DTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE------S--FC 190 (390)
T ss_pred cceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh------h--hc
Confidence 3444444455444444 43222232222222 457789999887777777664443322 22332 2 34
Q ss_pred cccCCccchhhhhccee-eEeecCCeeeEEEcccceEEEecc------------cccCCCceEEEeecCeEEEE-EEcCe
Q 016020 270 LHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSR------------TEFMTPSAFIFLYENQLFLT-FRNRT 335 (396)
Q Consensus 270 L~~sk~i~FiE~~~ekL-LIKQed~~L~I~Dv~~~ki~~v~~------------t~~~~PsAFiFly~~qLFLT-fs~gt 335 (396)
|+|.-.|-=|++.-+|+ +...-|+.|+.||+.+++...+.. .+.+.|.... .++.+.-+. .++|+
T Consensus 191 lGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~-i~e~~~~~~~~~~~~ 269 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIA-IFESSRLVWLLCDGT 269 (390)
T ss_pred cccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHH-HHHhhhhhheecCCC
Confidence 67766666566666665 888899999999999999885311 1111111111 112222222 23333
Q ss_pred EEEEeccc-----ceeeeeccccccCCC---CCCCcEEEccCCcEEEEec
Q 016020 336 VAVWNFRG-----ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYC 377 (396)
Q Consensus 336 i~iWd~~g-----eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~ 377 (396)
= ++.|.- .++.-+-.|..|... .-+.-|+|+...--.+.||
T Consensus 270 p-~~if~~~a~~~~~v~l~~~~qv~d~a~~et~t~~ili~~~~~~~~~l~ 318 (390)
T KOG3914|consen 270 P-VVIFGAEALPTSLVPLVSEVQVWDLALLETETDSILIDEQSAHLTKLR 318 (390)
T ss_pred e-EEEEeecCCCceeEEEEecccceeeeeeecccceeEeeccccchhhhh
Confidence 3 444433 366666666667544 6677888888888888888
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.51 E-value=34 Score=35.92 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=127.7
Q ss_pred eCCCCcEEEeecCCCeEEEEeccCceEEEEecc-------CceEEEEEcCCeEEEEEecCCCeeeeEEEEe-ecCcE--E
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTV--L 263 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I-etG~~--l 263 (396)
|...--..|.++++.-+++||.-+++.=-|..+ .....+.|||+=--|+..-. --+++||+ -.|.. .
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk---rcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK---RCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc---ceEEEeeccCCCCCCcc
Confidence 334455678889999999999999995555444 34567888854333333332 46899999 44543 2
Q ss_pred EEEEee-----cccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEc-CeE
Q 016020 264 KVFYHL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRN-RTV 336 (396)
Q Consensus 264 ~s~~~~-----L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~-gti 336 (396)
++.... -.--.-+.|.+-....+.+..=++.+=||.=..+...-++-+|..-..-.-|-.+++- |.-.+. ..|
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 222210 0011126688866668889999999999998888888888888888888888776665 444554 899
Q ss_pred EEEeccc--ceeeeeccccccC------CCCCCCcEEEccCCcEEEEeccCCC
Q 016020 337 AVWNFRG--ELVTSFEDHLLWH------PDCNTNNIYITSDQDLIISYCKAEP 381 (396)
Q Consensus 337 ~iWd~~g--eL~t~fedh~l~~------~~c~~n~~~it~~qd~ii~~~~~~~ 381 (396)
..||.+- +.+-.+++|.-.+ ..=+++++..|.|+|=.|.-..-..
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999987 6888888887532 1256788888888888877665544
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.07 E-value=36 Score=35.37 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
|-||. -|+=+|.++.|.+++|||.+.-+-=++++ .+.|.++|++.-+.--+
T Consensus 19 Vs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAh------------------------ 69 (361)
T KOG2445|consen 19 VSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAH------------------------ 69 (361)
T ss_pred eeecc-cCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecC------------------------
Confidence 56777 79999999999999999998877777777 45666776664332222
Q ss_pred ccCCccchhhhhcceeeEeecCCeeeEEEcc-----cceEEEecccccC----CCceEEEee-cCeEEE-EEEc-CeEEE
Q 016020 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVR-----NAELMEVSRTEFM----TPSAFIFLY-ENQLFL-TFRN-RTVAV 338 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~-----~~ki~~v~~t~~~----~PsAFiFly-~~qLFL-Tfs~-gti~i 338 (396)
+ | ||+-+..-..|..+.||-=- .....=+.++--+ ...-.=|-| .-.|.| +.+. |+++|
T Consensus 70 -P-------E-fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 70 -P-------E-FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred -c-------c-ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 1 2 77777777888888888641 1111112222211 122223433 445544 4444 99999
Q ss_pred Eecc
Q 016020 339 WNFR 342 (396)
Q Consensus 339 Wd~~ 342 (396)
|+.-
T Consensus 141 YEA~ 144 (361)
T KOG2445|consen 141 YEAP 144 (361)
T ss_pred EecC
Confidence 7653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 396 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 72/431 (16%), Positives = 134/431 (31%), Gaps = 128/431 (29%)
Query: 16 SGRRVLAKKRVRSDG----FVNSV---------------KKLQR------REICSKRDRA 50
SG+ +A S + + LQ+ S+ D +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 51 FSIS----NAQERFRNMHLVEEY--------DTHDPK------GHCPFVLPFLMKRTK-V 91
+I + Q R + + Y + + K C +L L R K V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-IL--LTTRFKQV 277
Query: 92 IEIV-AARDIVFALAHSGVCAAFSRETNRRIC--FLNVS----PDEVIR------SLFYN 138
+ + AA +L H + + + + +L+ P EV+ S+
Sbjct: 278 TDFLSAATTTHISLDH--HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 139 KNNDSLITVSVYASDNFSSL-KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEF-DDV 196
D L T + N L + + + +P +F+ F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDR-------LSVFPPSA 385
Query: 197 N--GKVL-TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLK 253
+ +L V + N YS+ +K +E IS I + ++ LK
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSI-------YLELK 436
Query: 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILD-------------V 300
+ + LHR+ ++ +N ++ LD +
Sbjct: 437 VKLENEYA--------LHRS----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 360
+ E M + R F+ F FL E ++ R+ + A WN G ++ + + + P
Sbjct: 485 EHPERMTLFRMVFLD---FRFL-EQKI----RHDSTA-WNASGSILNTLQQLKFYKP--- 532
Query: 361 TNNIYITSDQD 371
YI D D
Sbjct: 533 ----YIC-DND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 4e-04
Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 74/203 (36%)
Query: 206 QDSIYKVFDLKNYT-MLYSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263
+D+ FD K+ M SI S + + I +S L
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--------------------AVSGTL 65
Query: 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 323
++F+ LL + +++ +++F E++L + N LM +TE PS +Y
Sbjct: 66 RLFWTLLSKQEEM--VQKFVEEVL--RINYKF---------LMSPIKTEQRQPSMMTRMY 112
Query: 324 ENQLFLTFRNRTVAVWN----F------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLI 373
Q R+R +N F R + LL + ++++
Sbjct: 113 IEQ-----RDRL---YNDNQVFAKYNVSRLQPYLKLRQALL----------ELRPAKNVL 154
Query: 374 ISYCKAEPEDQWMEGSGNSFTCL 396
I + GSG + +
Sbjct: 155 I---------DGVLGSGKT--WV 166
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.71 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.7 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.69 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.68 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.67 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.63 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.63 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.63 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.62 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.61 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.61 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.6 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.6 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.59 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.59 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.58 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.58 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.57 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.57 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.56 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.56 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.56 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.56 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.55 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.55 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.55 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.55 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.55 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.55 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.55 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.54 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.54 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.53 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.53 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.53 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.53 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.53 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.53 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.53 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.52 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.52 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.52 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.52 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.52 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.52 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.51 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.51 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.51 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.51 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.51 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.5 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.5 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.49 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.49 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.49 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.49 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.49 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.47 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.47 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.46 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.46 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.46 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.45 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.45 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.45 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.45 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.45 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.45 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.44 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.44 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.44 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.42 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.42 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.42 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.41 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.41 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.41 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.4 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.4 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.39 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.39 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.39 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.39 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.39 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.39 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.39 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.39 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.38 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.38 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.37 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.37 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.37 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.36 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.36 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.35 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.35 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.34 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.34 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.34 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.33 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.33 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.33 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.32 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.32 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.31 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.31 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.3 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.3 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.29 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.28 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.26 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.25 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.24 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.24 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.23 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.21 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.21 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.2 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.19 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.19 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.17 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.15 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.09 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.09 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.08 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.07 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.06 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.04 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.0 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.0 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.98 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.97 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.84 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.83 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.82 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.76 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.73 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.68 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.66 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.61 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.59 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.58 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.53 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.52 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.5 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.5 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.45 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.43 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.42 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.41 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.39 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.39 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.36 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.3 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.28 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.26 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.21 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.17 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.08 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.08 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.07 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.06 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.95 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.94 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.93 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.93 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.91 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.84 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.78 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.73 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.71 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.71 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.7 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.67 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.62 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.59 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.57 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.52 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.48 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.47 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.46 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.45 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.43 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.35 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.34 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.3 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.23 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.09 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.09 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.05 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.05 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.95 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.94 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.8 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.67 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.63 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.52 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.5 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.49 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.41 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.39 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.34 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.32 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.29 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 96.28 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.22 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 96.11 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.09 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.02 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.87 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 95.84 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.83 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 95.75 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 95.73 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 95.72 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.7 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.56 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 95.5 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.48 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 95.46 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.36 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 95.33 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 95.1 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 94.85 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.74 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 94.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.52 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.42 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 94.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 94.11 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.01 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 93.97 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 93.96 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.62 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 93.6 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.36 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 92.48 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.32 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 91.97 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 91.58 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 91.55 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 91.01 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 90.09 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 89.96 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 89.6 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 88.85 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 88.43 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 88.21 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 88.07 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 87.85 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 87.36 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 86.98 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 86.41 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 86.4 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 86.39 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 85.13 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 84.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 81.39 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-16 Score=142.23 Aligned_cols=181 Identities=17% Similarity=0.282 Sum_probs=153.1
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.|.+ ++.+++..+.|+++|+||+.+.+++.++.. ..+..+.+||+-..|+.... ...++||++++|+....+.
T Consensus 86 ~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~--dg~v~i~~~~~~~~~~~~~- 161 (321)
T 3ow8_A 86 VDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYSLD- 161 (321)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT--TSEEEEEETTTCSEEEEEE-
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC--CCcEEEEEcCCCceeEEec-
Confidence 56776 788999999999999999999999999876 67889999988777777665 5678999999999988876
Q ss_pred ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-
Q 016020 269 LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG- 343 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g- 343 (396)
.+... +.|.+ .+.+|++...|+.|+|||+.+++++.+...+..++.+.-|.+++++++|-+. |+|.+||++.
T Consensus 162 --~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 162 --TRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp --CSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred --CCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 44443 78887 8999999999999999999999999999999999999999999999999887 8999999987
Q ss_pred ceeeeeccccccCCC---CCCCcEEEccCCcEEEEecc
Q 016020 344 ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 344 eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~ 378 (396)
+++..+..|..+... +|++++++|+..|=-|....
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 788899988766433 77888888877664444333
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-15 Score=141.36 Aligned_cols=261 Identities=11% Similarity=0.183 Sum_probs=191.9
Q ss_pred cccceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 87 KRTKVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 87 ~RS~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
-+.+|.-+.+.. .+++.-...|....||..+++.+..+.. +..-|.++=++....-|++.| .|. .+ +.-+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs---~D~--~i--~iwd 178 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS---ADM--TI--KLWD 178 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CC--CEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe---CCC--eE--EEEe
Confidence 456777777663 4677777889999999999999988875 445678888887666555533 222 22 2222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeE
Q 016020 165 IEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM 239 (396)
Q Consensus 165 ~~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~ 239 (396)
+ ..++ .+-. .-.|.+ -+.|.+ +|..++..+.|+.+++||+++..++.++.+ ..|..+.++|+-.
T Consensus 179 ~---~~~~-----~~~~--~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 179 F---QGFE-----CIRT--MHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp T---TSSC-----EEEC--CCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred C---CCCc-----eeEE--EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 1 1111 1100 012232 356877 788888899999999999999999988876 6799999998777
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhh-------------------hcceeeEeecCCeeeE
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQ-------------------FNEKLLVKQENENLQI 297 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~-------------------~~ekLLIKQed~~L~I 297 (396)
+++.... +-.++||++.+|+....+. .|... +.|.+. .+.+|+....|+.++|
T Consensus 248 ~l~s~s~--D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 248 LIASCSN--DQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp EEEEEET--TSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred EEEEEcC--CCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 6676665 5678999999999888765 33333 444442 2668999999999999
Q ss_pred EEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEccCCc
Q 016020 298 LDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQD 371 (396)
Q Consensus 298 ~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd 371 (396)
||+.+++++.+..+|..++.+..|.+++++++|-++ |+|.+||++. +.+..+..|.-.+.. .+++.+++|...|
T Consensus 323 wd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred EECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999999999999999999999999999999999887 8999999977 677788877543221 4556666665554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-15 Score=134.85 Aligned_cols=252 Identities=15% Similarity=0.141 Sum_probs=184.9
Q ss_pred chhhhhhccccceeeeccccceEEEe-cCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFL-NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~l-N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
++++.-..-|....|+..+++..+.. =..+..-|.++-++.....+++.| .+ ..++ .- ++..|+.-
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s----~D-~~i~--lW---d~~~~~~~--- 115 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS----LD-AHIR--LW---DLENGKQI--- 115 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE----TT-SEEE--EE---ETTTTEEE---
T ss_pred CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe----CC-CcEE--EE---ECCCCCEE---
Confidence 35666677788999998777665532 235566788888887666554433 22 1222 22 22222210
Q ss_pred cceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
.-+.... ...--+.|.+ +|+.++....|+.+++||+++.+.++++.. ..|..+.+||+-.+|+.... ...++||
T Consensus 116 ~~~~~~~-~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~--dg~i~iw 191 (321)
T 3ow8_A 116 KSIDAGP-VDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI--DGIINIF 191 (321)
T ss_dssp EEEECCT-TCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEE
T ss_pred EEEeCCC-ccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC--CCeEEEE
Confidence 0011100 1122477887 899999999999999999999999998876 67999999987776676665 4568999
Q ss_pred EeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 256 SIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
|+++|+.+..+. .+... +.|.+ .+.+|+....|+.|+|||+.++++..+..+|...+.+.-|.++++++++-+
T Consensus 192 d~~~~~~~~~~~---~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 192 DIATGKLLHTLE---GHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp ETTTTEEEEEEC---CCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ECCCCcEEEEEc---ccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 999999998877 45444 78888 889999999999999999999999999999999999999999999999988
Q ss_pred c-CeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 333 N-RTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 333 ~-gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
. |+|++||++. +.+..|.+|.-... ..++++.++|...|
T Consensus 268 ~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 268 SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 7 8999999986 78888888753321 24556666665544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-14 Score=130.25 Aligned_cols=261 Identities=12% Similarity=0.206 Sum_probs=185.5
Q ss_pred cceEEEeeccc--hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAARD--IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a~d--ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
.+|..+-...| +++.-...|....||..+++.+..+.. +...|.++-++.....|++.| .|. .+ +.-.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~---~d~--~v--~iw~-- 125 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG---LDN--IC--SIYN-- 125 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE---TTC--EE--EEEE--
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe---CCC--eE--EEEE--
Confidence 45555555533 677777889999999999998887765 445577788887766655533 222 22 2222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEE
Q 016020 167 YIRRGKPDSGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLL 241 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~l~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll 241 (396)
+..++ +..-.....-.|.+.| .|.+ +++ ++..+.|+.++|||+++.+.+..+.+ ..|..+.++|+-.++
T Consensus 126 -~~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 126 -LKTRE---GNVRVSRELAGHTGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp -TTTCS---BSCEEEEEEECCSSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -CccCC---CcceeEEEecCCCccEEEEEECC-CCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 11111 1111112223455543 4555 455 55567899999999999999999976 789999999987777
Q ss_pred EEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccc--ccCCC
Q 016020 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTP 316 (396)
Q Consensus 242 ~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t--~~~~P 316 (396)
+.... +..++|||+.+|+.+..+. .|... +.|.+ .+.+|++...|+.+++||+.+++....... +....
T Consensus 200 ~sg~~--d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 200 VSGAC--DASAKLWDVREGMCRQTFT---GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp EEEET--TSCEEEEETTTCSEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEeC--CCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 77665 5678999999999988876 55554 78887 789999999999999999999887664432 22356
Q ss_pred ceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEccCCc
Q 016020 317 SAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQD 371 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd 371 (396)
.+.-|.++++++++-++ |+|.+||... +.+..+..|.-+... .+++..++|+..|
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 78889999999998887 8999999866 788888888655322 5566666665554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-14 Score=127.40 Aligned_cols=234 Identities=13% Similarity=0.174 Sum_probs=173.6
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
...++.-...|....||..+++.+..+... ...|+++-+....+.|++.| ++ ..++. - ++..| .
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s----~d-~~i~v--w---d~~~~-----~ 88 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGS----DD-FRIRV--F---NYNTG-----E 88 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEE----TT-SEEEE--E---ETTTC-----C
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEEeecc-CCcEEEEEEeCCCCEEEEEC----CC-CEEEE--E---ECCCC-----c
Confidence 345666677899999999999988888754 44677888887777776643 23 22222 2 22222 2
Q ss_pred cceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCc-eEEEEecc--CceEEEEEcC-CeEEEEEecCCCee
Q 016020 178 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHV 250 (396)
Q Consensus 178 ~LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknY-s~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~i 250 (396)
++.+ --.|++. +.|.+ +|+.++..+.|+++|+||+++. .....+.+ ..|..+.++| +-.+++.... +.
T Consensus 89 ~~~~--~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~--D~ 163 (304)
T 2ynn_A 89 KVVD--FEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DR 163 (304)
T ss_dssp EEEE--EECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET--TS
T ss_pred EEEE--EeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC--CC
Confidence 2221 1135554 46887 7888889999999999999987 44455554 7799999998 4444455554 46
Q ss_pred eeEEEEeecCcEEEEEEeecccCCc---cchhhh-hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe
Q 016020 251 PLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q 326 (396)
.++|||+.+++....+. .++... ++|.+. .+.+|+....|+.|+|||+.+++++.+..+|.....+..|.++++
T Consensus 164 ~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp EEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred eEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence 89999999988776654 233333 455442 567899999999999999999999999999999999999999999
Q ss_pred EEEEEEc-CeEEEEeccc-ceeeeeccccc
Q 016020 327 LFLTFRN-RTVAVWNFRG-ELVTSFEDHLL 354 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~g-eL~t~fedh~l 354 (396)
+++|-+. |+|++||.+. ++...+..|.-
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSS
T ss_pred EEEEEcCCCeEEEEECCCCceeeeccCCCc
Confidence 9999987 9999999987 78888887753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=127.72 Aligned_cols=178 Identities=17% Similarity=0.237 Sum_probs=144.2
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-+.|++ +|+.++..+.|+.++|||+.+.+.+..+.+ ..|..++++|+--+++.... ...++||++++|+.+..+.
T Consensus 28 ~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~ 104 (312)
T 4ery_A 28 SVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLK 104 (312)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEE
T ss_pred EEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC--CCEEEEEECCCCcEEEEEc
Confidence 367888 889999999999999999999999888876 78999999988776676665 5678999999999998877
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
.+... +.|.+ .+.+|+....|+.+++||+.+++.......+..+..+..|.++++++++-+. |+|.+||++.
T Consensus 105 ---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 105 ---GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp ---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 55555 56777 7889999999999999999999999988899999999999999999998886 9999999986
Q ss_pred -ceeeee-cccccc---CCCCCCCcEEEccCCcEEE
Q 016020 344 -ELVTSF-EDHLLW---HPDCNTNNIYITSDQDLII 374 (396)
Q Consensus 344 -eL~t~f-edh~l~---~~~c~~n~~~it~~qd~ii 374 (396)
+.+..+ +.|... ....++++++++...|=-|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 554444 333221 1125667777776655333
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-14 Score=128.36 Aligned_cols=246 Identities=9% Similarity=0.058 Sum_probs=174.4
Q ss_pred cceEEEeeccchhhhhhccccceeeeccccc------eEEEecCCCCceEEEEeeecC----C---CeEEEEEeEecCCC
Q 016020 89 TKVIEIVAARDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKN----N---DSLITVSVYASDNF 155 (396)
Q Consensus 89 S~V~EIv~a~dii~~L~~sG~c~af~~~t~~------~ic~lN~s~~evIrsifyN~~----n---~slI~vSv~~sd~~ 155 (396)
.+|.-+-...+++++-...|....||..+++ .+..+. .+..-|.++-++.. . ..|++.| .|.
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~---~dg- 91 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS---FSG- 91 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE---TTS-
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc---CCC-
Confidence 3455555555677777888999999999988 555555 45556888888876 4 4444432 232
Q ss_pred ceeeeEeeehhhhhhCCCCCCCcceeeccc------CCCCeEEee----CCCCcE-EEeecCCCeEEEEeccC------c
Q 016020 156 SSLKCRSTKIEYIRRGKPDSGFALFESESL------KWPGFVEFD----DVNGKV-LTYSAQDSIYKVFDLKN------Y 218 (396)
Q Consensus 156 s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l------~~PgfVEFD----d~NgkI-lt~~a~d~~YrVwdlkn------Y 218 (396)
.++.-.+. .++.....++..-... ...--+.|. + +|+. ++....|+.+++||+.+ .
T Consensus 92 -~i~iw~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 92 -DLLFYRIT-----REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp -CEEEEEEE-----ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred -CEEEEEcc-----CCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 33333322 2221111011111111 233457888 5 6777 88889999999999999 6
Q ss_pred eEEE-----Ee---------ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc---CCc---cch
Q 016020 219 TMLY-----SI---------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR---NKK---VDF 278 (396)
Q Consensus 219 s~ly-----sI---------s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~---sk~---i~F 278 (396)
+.+. .+ ....|..+.++|+- +++.... ...++||++.+++.+..+.....| ... +.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN--NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT--TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC--CCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 6555 55 35789999999877 6666555 467999999999999888721113 344 778
Q ss_pred hhhhcceeeEeecC---CeeeEEEcccceEEEeccc-------------ccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 279 IEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRT-------------EFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 279 iE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t-------------~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
.+ .+.+|++...| +.|++||+.+++.+..... +...+.+..|.++++++++-+. |+|.+||+
T Consensus 242 ~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 242 SP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp CS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 77 68999999999 9999999999999988887 8899999999999999999886 99999999
Q ss_pred cc-ceeeeec
Q 016020 342 RG-ELVTSFE 350 (396)
Q Consensus 342 ~g-eL~t~fe 350 (396)
+. +++..+.
T Consensus 321 ~~~~~~~~~~ 330 (397)
T 1sq9_A 321 KTKERITTLN 330 (397)
T ss_dssp TTTEEEEEEE
T ss_pred CCCceeEEEe
Confidence 76 7888887
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=136.30 Aligned_cols=182 Identities=14% Similarity=0.258 Sum_probs=149.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.|++ +|+.++..+.|+.++|||+.+++++..+.+ ..|..+.++|+--.++.... +..+++||+++|+.+..+.
T Consensus 156 v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~--D~~i~~wd~~~~~~~~~~~- 231 (410)
T 1vyh_C 156 ISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR--DKTIKMWEVQTGYCVKTFT- 231 (410)
T ss_dssp EEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTCCEEEEEE-
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEe-
Confidence 67887 789999999999999999999999999876 78999999987666666655 5779999999999998877
Q ss_pred ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeec--------------------C
Q 016020 269 LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE--------------------N 325 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~--------------------~ 325 (396)
.|+.. +.|.+ .+..|+....|+.+++||+.++++......|...+.+.-|.++ +
T Consensus 232 --~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 232 --GHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp --CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred --CCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 55554 56665 7889999999999999999999999999999999999999886 5
Q ss_pred eEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEccCCcEEEEeccC
Q 016020 326 QLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 326 qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~~ 379 (396)
.+++|-+. |+|.+||++. +.+..+..|.-|... .+++++++|...|=-|.....
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 56777776 8999999885 778888888765432 567777777777754444443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-13 Score=126.77 Aligned_cols=254 Identities=13% Similarity=0.214 Sum_probs=177.4
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 178 (396)
..|+.-..-|....||..+++....+... ...|.++-++.....+++.+ .|+ +|+.-+... ++. .+..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g~~lasg~---~d~----~i~v~~~~~---~~~-~~~~ 144 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSGCAIACGG---LDN----KCSVYPLTF---DKN-ENMA 144 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTSSEEEEES---TTS----EEEEEECCC---CTT-CCSG
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCCCEEEEee---CCC----CEEEEEEec---ccc-cccc
Confidence 35666677799999999999888877654 44567788887766655532 222 233332211 110 1110
Q ss_pred ceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCC--eEEEEEecCCCeee
Q 016020 179 LFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVP 251 (396)
Q Consensus 179 LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~ip 251 (396)
--....-.|.+. +.|.+ +++.++..+.|+++++||+++.+.+.++.+ ..|..+.++|. -.+++.... +..
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~--Dg~ 221 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC--DKK 221 (354)
T ss_dssp GGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET--TSC
T ss_pred ccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC--CCe
Confidence 001111134444 46777 566677778899999999999999998875 77999999863 133344444 467
Q ss_pred eEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccc--ccCCCceEEEeecCe
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQ 326 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t--~~~~PsAFiFly~~q 326 (396)
++|||+.+|+.+..+. .|... +.|.+ .+.+|+....|+.+++||+++++...+... ....+.+.-|.++++
T Consensus 222 v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFE---THESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp EEEEETTTCCEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred EEEEECCCCcEEEEec---CCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 9999999999988776 55555 67777 789999999999999999999877665433 334667889999999
Q ss_pred EEEEEEc-CeEEEEecc-cceeeeeccccccCCC---CCCCcEEEccCCc
Q 016020 327 LFLTFRN-RTVAVWNFR-GELVTSFEDHLLWHPD---CNTNNIYITSDQD 371 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~-geL~t~fedh~l~~~~---c~~n~~~it~~qd 371 (396)
++++-+. ++|.+||+. |+.+..+..|.-+... .|++++++|...|
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 9888876 899999984 5788888888655322 6677777776665
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-14 Score=128.57 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=140.1
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-+.|.+ +|+.++..+.|+.++|||+.+...+..+.. ..|..++++|+-.+++.... +..++|||+++|+.+..+.
T Consensus 18 ~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~ 94 (304)
T 2ynn_A 18 GIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFE 94 (304)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEE
T ss_pred EEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC--CCEEEEEECCCCcEEEEEe
Confidence 467888 788899899999999999999999988875 67999999988777777666 5778999999999999887
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEec
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~ 341 (396)
.|... +.|.+ .+.+|+....|+.+++||+.++ ++..+..+|.....+.-|.+ ++++++|-+. |+|++||+
T Consensus 95 ---~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 95 ---AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp ---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred ---CCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 56655 77877 7889999999999999999997 66678889999999999998 5678888776 99999999
Q ss_pred cc-ceeeee-cccc---ccCCCC--CCCcEEEccCCcEEEEe
Q 016020 342 RG-ELVTSF-EDHL---LWHPDC--NTNNIYITSDQDLIISY 376 (396)
Q Consensus 342 ~g-eL~t~f-edh~---l~~~~c--~~n~~~it~~qd~ii~~ 376 (396)
+. .....+ ..|. .....+ +++.+++|+..|=-|--
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i 212 (304)
T 2ynn_A 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212 (304)
T ss_dssp TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 65 322222 2221 111112 35566666666644433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=136.32 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=136.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+.|.+ +|+.|+..+.|+++||||+++.+.+..+.+ ..|..+.++|.- .+++.... +..++|||+++|+.+..+.
T Consensus 133 v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~ 209 (344)
T 4gqb_B 133 VSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSE--DNRILLWDTRCPKPASQIG 209 (344)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEET--TSCEEEEETTSSSCEEECC
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecc--ccccccccccccceeeeee
Confidence 56887 899999999999999999999999999986 889999999753 45555554 4678999999999998765
Q ss_pred eecccC--CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEc-CeEEEEeccc
Q 016020 268 HLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~s--k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~g 343 (396)
...+.. .-+.|.+..+..|+...+|+.|+|||+++++++.....|.....+..|.+++ ++++|-+. |+|.|||.+.
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 322221 2378888677778889999999999999999999999999999999999987 56777775 9999999998
Q ss_pred -ceeeeeccccccCCC---CCCCc-EEEccCCc
Q 016020 344 -ELVTSFEDHLLWHPD---CNTNN-IYITSDQD 371 (396)
Q Consensus 344 -eL~t~fedh~l~~~~---c~~n~-~~it~~qd 371 (396)
+++ .+++|--++-. +|++. ++.|...|
T Consensus 290 ~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 290 SELF-RSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp CEEE-EECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 454 46777544322 55654 45554333
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-12 Score=116.21 Aligned_cols=255 Identities=15% Similarity=0.198 Sum_probs=178.3
Q ss_pred ceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 90 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
+|.-+-.. ...++.-...|....|+..+++....+.... .-|.++-++...+.|++.| .|. .++.- +
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~---~d~--~i~vw-----d 93 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSNLLVSAS---DDK--TLKIW-----D 93 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEE---TTS--EEEEE-----E
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC-CceEEEEEcCCCCEEEEEC---CCC--EEEEE-----E
Confidence 34444433 3456666778999999999999999887544 4577888888776666543 222 22222 2
Q ss_pred hhhCCCCCCCcceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEE
Q 016020 168 IRRGKPDSGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLI 242 (396)
Q Consensus 168 i~~gk~~~~~~LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~ 242 (396)
++.|+ ++.. .-.|.+. +.|.+ +|..++..+.|+.+++||+++.+.+..+.. ..|..+.++|+-.+++
T Consensus 94 ~~~~~-----~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 94 VSSGK-----CLKT--LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTTCC-----EEEE--EECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCc-----EEEE--EcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 22222 1111 0123333 46777 788888899999999999999999999876 6799999998766666
Q ss_pred EecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCce-
Q 016020 243 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA- 318 (396)
Q Consensus 243 ~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsA- 318 (396)
.... ...+++||+.+|+.+..+. .++... +.|.+ .+++|+....|+.+++||+.+++.......+...+..
T Consensus 166 ~~~~--d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 166 SSSY--DGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240 (312)
T ss_dssp EEET--TSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred EEeC--CCcEEEEECCCCceeeEEe--ccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE
Confidence 6555 4568999999999988764 133333 66666 7899999999999999999999998877766554332
Q ss_pred -EEE-eecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEcc
Q 016020 319 -FIF-LYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 319 -FiF-ly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
..| .++++++++-+. |+|.+||++. +++..++.|.-+... .|+++..+|+
T Consensus 241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence 233 356777777665 9999999987 788899988543221 4555555554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.60 E-value=9.5e-13 Score=119.28 Aligned_cols=249 Identities=12% Similarity=0.116 Sum_probs=174.8
Q ss_pred cccceEEEeecc---------chhhhhhccccceeeeccccce-----EEEecCCC----CceEEEEeee----cCCCe-
Q 016020 87 KRTKVIEIVAAR---------DIVFALAHSGVCAAFSRETNRR-----ICFLNVSP----DEVIRSLFYN----KNNDS- 143 (396)
Q Consensus 87 ~RS~V~EIv~a~---------dii~~L~~sG~c~af~~~t~~~-----ic~lN~s~----~evIrsifyN----~~n~s- 143 (396)
...+|..+.... .+++.-...|....||..+++. +..+...+ +.-|.++-++ ...+.
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 456677776653 4677777889999999999987 77777665 5778888888 66666
Q ss_pred EEEEEeEecCCCceeeeEeeeh-hhhhhCCCCCCCc--cee------ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEe
Q 016020 144 LITVSVYASDNFSSLKCRSTKI-EYIRRGKPDSGFA--LFE------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (396)
Q Consensus 144 lI~vSv~~sd~~s~L~cr~~~~-~~i~~gk~~~~~~--LF~------~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwd 214 (396)
|++.+ .|. .++.-.+.- +.-..++.-.-.| -+. ...-...--+.|++ +| .++....|+.+++||
T Consensus 141 l~~~~---~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 141 LVATD---VKG--TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISE 213 (397)
T ss_dssp EEEEE---TTS--CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEE
T ss_pred EEEEe---CCC--cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEE
Confidence 55533 222 233322221 0000011101000 111 11123345678888 66 888889999999999
Q ss_pred ccCceEEEEecc--------CceEEEEEcCCeEEEEEecC-CCeeeeEEEEeecCcEEEEEEeec----------ccCCc
Q 016020 215 LKNYTMLYSISD--------KHVQEIKISPGIMLLIFNRS-SSHVPLKILSIEDGTVLKVFYHLL----------HRNKK 275 (396)
Q Consensus 215 lknYs~lysIs~--------~~VqEIkiSpg~~Ll~~q~~-~~~iplkIl~IetG~~l~s~~~~L----------~~sk~ 275 (396)
+++.+.+..+.. ..|..+.++|+-.+++.... .....++|||+.+|+.+..+.... .+...
T Consensus 214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred CCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence 999999988874 57999999976555555544 122789999999999998876210 04444
Q ss_pred ---cchhhhhcceeeEeecCCeeeEEEcccceEEEecc------cc---------------cCCCceEEEeecC------
Q 016020 276 ---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR------TE---------------FMTPSAFIFLYEN------ 325 (396)
Q Consensus 276 ---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~------t~---------------~~~PsAFiFly~~------ 325 (396)
+.|.+ .+.+|++...|+.|+|||+.+++.+.... ++ ...+.+..|.+++
T Consensus 294 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 294 VMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred EEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence 77877 78999999999999999999999999887 77 8889999999998
Q ss_pred ----eEEEEEEc-CeEEEEeccc
Q 016020 326 ----QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 326 ----qLFLTfs~-gti~iWd~~g 343 (396)
++++|.+. |+|.+||+++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccceEEEecCCCcEEEEEcCC
Confidence 68888875 9999999875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-13 Score=128.87 Aligned_cols=253 Identities=14% Similarity=0.263 Sum_probs=178.8
Q ss_pred cceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
..|..+.+. ...++.-...|....||..+. .+-.+ ..+..-|.++-++.+...|++.+ .|. .++....
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~-~~~~~~v~~~~~s~~g~~l~~~~---~dg--~v~~~~~--- 373 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTL-TGHSSSVWGVAFSPDGQTIASAS---DDK--TVKLWNR--- 373 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECTTSSEEEEEE---TTS--EEEEEET---
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEE-eCCCCCEEEEEECCCCCEEEEEe---CCC--EEEEEcC---
Confidence 445554443 235555666777888886543 33333 34455677888887777665533 222 2322211
Q ss_pred hhhhCCCCCCCcceeecccCCC---CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEE
Q 016020 167 YIRRGKPDSGFALFESESLKWP---GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLL 241 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~l~~P---gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll 241 (396)
.|+ +..+. ..|+ --+.|++ +|+.++..+.|+.++|||. +.+++..+.+ ..|..+.+||+-.+|
T Consensus 374 ---~~~------~~~~~-~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 374 ---NGQ------LLQTL-TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp ---TCC------EEEEE-ECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ---CCC------EEEEe-cCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 111 11111 1122 2467887 7888988899999999995 6777777776 889999999876666
Q ss_pred EEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCce
Q 016020 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 318 (396)
Q Consensus 242 ~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsA 318 (396)
+.... ...+++|++ +|+.+..+. .|... +.|.+ .+++|+...+|+.|+||| .++++++....|...+.+
T Consensus 442 ~~~~~--d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~ 513 (577)
T 2ymu_A 442 ASASD--DKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRG 513 (577)
T ss_dssp EEEET--TSEEEEEET-TSCEEEEEE---CCSSCEEEEEECT-TSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEE
T ss_pred EEEcC--CCEEEEEEC-CCCEEEEEc---CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEE
Confidence 66555 456899995 788877766 55555 78887 899999999999999999 588889988999999999
Q ss_pred EEEeecCeEEEEEEc-CeEEEEecccceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 319 FIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 319 FiFly~~qLFLTfs~-gti~iWd~~geL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
.-|++++++++|.+. |+|.+||..|+++..+..|.-.+. ..||++.++|..+|
T Consensus 514 l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 514 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 999999999998887 899999999998888888754322 25666666665554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-13 Score=124.68 Aligned_cols=248 Identities=13% Similarity=0.144 Sum_probs=172.7
Q ss_pred ccccceeeeccccceEEEecCCC-----------------CceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh
Q 016020 106 HSGVCAAFSRETNRRICFLNVSP-----------------DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (396)
Q Consensus 106 ~sG~c~af~~~t~~~ic~lN~s~-----------------~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i 168 (396)
..+....|+..+|+.+..+.... +..|+++-++....-|++.| .|. .+ +.-++
T Consensus 83 ~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~---~d~--~i--~iwd~--- 152 (393)
T 1erj_A 83 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA---EDR--LI--RIWDI--- 152 (393)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE---TTS--CE--EEEET---
T ss_pred cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc---CCC--eE--EEEEC---
Confidence 35678899999999988875432 22489999998766665533 222 22 22222
Q ss_pred hhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEE
Q 016020 169 RRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIF 243 (396)
Q Consensus 169 ~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~ 243 (396)
..| ..+.. .-.|.+ -+.|.+ +|+.++..+.|+.+++||+++.+.+..+.. ..+..+.++| +-.+++.
T Consensus 153 ~~~-----~~~~~--~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (393)
T 1erj_A 153 ENR-----KIVMI--LQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 224 (393)
T ss_dssp TTT-----EEEEE--ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred CCC-----cEEEE--EccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEE
Confidence 111 11111 112333 367877 788888899999999999999998888876 7899999997 4344444
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEee----cccCCc---cchhhhhcceeeEeecCCeeeEEEcccc------------e
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHL----LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA------------E 304 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~----L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~------------k 304 (396)
... ...++|||+++|+.+..+... ..|... +.|.+ .+++|+....|+.+++||+.+. .
T Consensus 225 ~s~--d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 225 GSL--DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp EET--TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------C
T ss_pred EcC--CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 444 456899999999988776311 234333 78887 8899999999999999999874 3
Q ss_pred EEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccC------CC---CCCCcEEEccCCcEE
Q 016020 305 LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWH------PD---CNTNNIYITSDQDLI 373 (396)
Q Consensus 305 i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~------~~---c~~n~~~it~~qd~i 373 (396)
+.....+|.....+..|.++++++++-+. |+|.+||... +.+..++.|.-.+ +. .+++++++|+..|=-
T Consensus 302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 44555678888888999999999999887 8999999876 7777888885432 21 246778888776643
Q ss_pred E
Q 016020 374 I 374 (396)
Q Consensus 374 i 374 (396)
|
T Consensus 382 i 382 (393)
T 1erj_A 382 A 382 (393)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=128.68 Aligned_cols=185 Identities=14% Similarity=0.213 Sum_probs=143.0
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
-+.|.+ +|+.++..+.|+.++|||+.+.+.+..+.+ ..|..+.++|+--.|+.... +..++|||+.+|+....+.
T Consensus 128 ~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG--DRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEE
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC--CCcEEEEECCCCeeEEEEE
Confidence 367887 899999999999999999999999988876 77999999987666666655 5679999999999888776
Q ss_pred eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec-------ccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-------RTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-------~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+. ..-..+.|.+..+.+|++...|+.++|||+.++++.... .+|...+.+..|.+++++++|-+. |+|.+|
T Consensus 205 ~~-~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 205 IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cC-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 21 111237788778999999999999999999999988755 467788999999999999999886 999999
Q ss_pred eccc-------------ceeeeeccccccCC---CCCCCcEEEccCCcEEEEecc
Q 016020 340 NFRG-------------ELVTSFEDHLLWHP---DCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 340 d~~g-------------eL~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~~ 378 (396)
|++. .....+..|.-++. ..+++.+++|...|=.|....
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9874 23445666654322 255666777766664444333
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-13 Score=116.23 Aligned_cols=228 Identities=17% Similarity=0.156 Sum_probs=162.5
Q ss_pred hhhhhhccccceeeeccccceEE---Eec-CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 016020 100 IVFALAHSGVCAAFSRETNRRIC---FLN-VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic---~lN-~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 175 (396)
++++-. .|....||..+++... .+. ..+...|.++-++.....|++.+ .| ..++...+ ..++.
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d--~~i~~~d~-----~~~~~-- 131 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EA--STLSIWDL-----AAPTP-- 131 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SS--SEEEEEEC-----CCC----
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc---CC--CcEEEEEC-----CCCCc--
Confidence 444444 7889999988776333 222 25677889999998776666643 22 23333322 11110
Q ss_pred CCcceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 176 GFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 176 ~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
.....- ..-...--+.|++ +|+.++....|+.+++||+++.+.+..+.. ..|..+.++|+-..++.... .-.+
T Consensus 132 -~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i 207 (337)
T 1gxr_A 132 -RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL--DNTV 207 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEE
T ss_pred -ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec--CCcE
Confidence 011111 1111122467887 788888889999999999999999999875 78999999977655555544 4578
Q ss_pred EEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
++||+.+|+.+..+.+. ..-..+.|.+ .+.+|++..+++.+++||+.+++.... ..+...+.+..|.++++++++.+
T Consensus 208 ~~~d~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 208 RSWDLREGRQLQQHDFT-SQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCceEeeecCC-CceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEEEECCCCCEEEEec
Confidence 99999999998887631 1122377777 789999999999999999999988754 56778899999999999998888
Q ss_pred c-CeEEEEeccc-ceee
Q 016020 333 N-RTVAVWNFRG-ELVT 347 (396)
Q Consensus 333 ~-gti~iWd~~g-eL~t 347 (396)
. |+|.+||++. +.+.
T Consensus 285 ~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 285 KDNLLNAWRTPYGASIF 301 (337)
T ss_dssp TTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEECCCCeEEE
Confidence 6 9999999987 4443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-13 Score=124.39 Aligned_cols=255 Identities=13% Similarity=0.144 Sum_probs=175.3
Q ss_pred cccceEEEeecc-chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecC-CCeEEEEEeEecCCCceeeeEeee
Q 016020 87 KRTKVIEIVAAR-DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 87 ~RS~V~EIv~a~-dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~-n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
....|..+.... ..++.-...|....||..+++.+..+.. +..-|.++=++.. +..++. +. ..|. .++.-.+.
T Consensus 161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~-s~-s~d~--~i~vwd~~ 235 (464)
T 3v7d_B 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIV-TG-SRDN--TLHVWKLP 235 (464)
T ss_dssp CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEE-EE-ETTS--CEEEEECC
T ss_pred CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEE-EE-cCCC--cEEEeeCC
Confidence 456677777664 4777778889999999999998888875 4556677766643 333333 21 1222 23332221
Q ss_pred hhh-hh-hCCC---------CCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEE
Q 016020 165 IEY-IR-RGKP---------DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQE 231 (396)
Q Consensus 165 ~~~-i~-~gk~---------~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqE 231 (396)
-.. +. .+.. ..+.+.+....-.|.+.|.-=..+|..++..+.|+.++|||+.+.+.+..+.+ ..|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 315 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEE
Confidence 100 00 0000 00011122223334443332234688899999999999999999999999986 78999
Q ss_pred EEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc
Q 016020 232 IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (396)
Q Consensus 232 IkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t 311 (396)
+.++|+-..++.... +..++|||+++|+.+..+. .|...+.-+...+.+|++...|+.|++||+.+++..... .
T Consensus 316 ~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~ 389 (464)
T 3v7d_B 316 TIYDHERKRCISASM--DTTIRIWDLENGELMYTLQ---GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY-H 389 (464)
T ss_dssp EEEETTTTEEEEEET--TSCEEEEETTTTEEEEEEC---CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE-E
T ss_pred EEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEe---CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeee-c
Confidence 999987555555555 4569999999999999887 666776655556889999999999999999997755433 3
Q ss_pred ccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeee-eccc
Q 016020 312 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTS-FEDH 352 (396)
Q Consensus 312 ~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~-fedh 352 (396)
+........|.++++++++-++|+|.+||++. +++.. +..|
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTT
T ss_pred CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccC
Confidence 55567778899999999999999999999876 66653 4444
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-13 Score=123.81 Aligned_cols=266 Identities=12% Similarity=0.168 Sum_probs=177.9
Q ss_pred cceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
.+|.-+-.. ..+++.-...|....||..+++.+..+...... |.++-++.+...|++.| .+ . .|+.-.++
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~las~~----~d-~--~v~iw~~~ 138 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAFAPNGQSVACGG----LD-S--ACSIFNLS 138 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEECTTSSEEEECC----SS-S--CCEEEECC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEECCCCCEEEEee----CC-C--cEEEEECC
Confidence 455555554 346777778899999999999999888765554 55666777666665532 22 1 22322221
Q ss_pred hhhhCCCCCCCcceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec-------cCceEEEEEcC
Q 016020 167 YIRRGKPDSGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIKISP 236 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs-------~~~VqEIkiSp 236 (396)
. +....+........-.|.++ +.|.+.++..++..+.|+++++||+++.+.+..+. ...|..+.++|
T Consensus 139 ~---~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 139 S---QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp C---CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred C---CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 1 11001110011111233333 35666556677788899999999999999888772 26789999975
Q ss_pred -CeEEEEEecCCCeeeeEEEEee-cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccc
Q 016020 237 -GIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (396)
Q Consensus 237 -g~~Ll~~q~~~~~iplkIl~Ie-tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t 311 (396)
+-.+++.... +..++|||+. +++.+..+. .|... +.|.+ .+.+|+....|+.++|||+++++.+.+...
T Consensus 216 ~~~~~l~sgs~--D~~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 216 LNANMFISGSC--DTTVRLWDLRITSRAVRTYH---GHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp SSCCEEEEEET--TSCEEEEETTTTCCCCEEEC---CCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEEEC--CCeEEEEECCCCCcceEEEC---CcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 4444455554 5678999998 456666555 55555 78887 889999999999999999999998886554
Q ss_pred ccC-------CCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeee----ccccccCC---CCCCCcEEEccCCc
Q 016020 312 EFM-------TPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSF----EDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 312 ~~~-------~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~f----edh~l~~~---~c~~n~~~it~~qd 371 (396)
+.. ...+.-|.++++++++-++ |+|.+||... +.+..+ ..|.-... ..|+++.++|+..|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence 432 3578899999999888876 9999999865 666665 44543322 25666666666555
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=124.68 Aligned_cols=258 Identities=12% Similarity=0.093 Sum_probs=180.9
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
...++.-...|....||..+++....+... +++...+++...+.|++.| .|. .++.-. +..|+
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~---~dg--~i~iwd-----~~~~~----- 130 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGT---TEG--DIKVLD-----SNFNL----- 130 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEE---TTS--CEEEEC-----TTSCE-----
T ss_pred CCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEE---CCC--CEEEEe-----CCCcc-----
Confidence 445666667788888988877665554433 6677777777666665533 222 222221 22211
Q ss_pred cceeecccCCCCe---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 178 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 178 ~LF~~~~l~~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
++- ..-.|++- +.|++ +|+.++..+.|+.+++||+.+.+.+..+.+ ..|..+.++|+--+|+.... +..+
T Consensus 131 ~~~--~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~v 205 (420)
T 3vl1_A 131 QRE--IDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL--DGTI 205 (420)
T ss_dssp EEE--ETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET--TSCE
T ss_pred eee--ecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC--CCcE
Confidence 111 01134443 67887 788999999999999999999998888875 78999999987655565555 4679
Q ss_pred EEEEeecCcEEEEEEeec------------------------ccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE-
Q 016020 253 KILSIEDGTVLKVFYHLL------------------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME- 307 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L------------------------~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~- 307 (396)
+|||+.+|+.+..+...- ..-..+.|.+ .+.+|++...|+.|++||+.+++...
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 999999999998876211 1112266666 88999999999999999999987655
Q ss_pred ecccccCCCceEEEeecCe-EEEEEEc-CeEEEEeccc--ceeeeecccc---ccCCCCCCCcEEEccCCcEEEEecc
Q 016020 308 VSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRG--ELVTSFEDHL---LWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~g--eL~t~fedh~---l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
+...+...+.+..|.++++ ++++-+. |+|.+||++. .++..+..|- .+....+++.+++|+..|=-|....
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 5556788899999999998 7777776 9999999986 3566676532 2222255777888887776555444
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=122.53 Aligned_cols=271 Identities=12% Similarity=0.105 Sum_probs=183.7
Q ss_pred ccceEEEeec------cchhhhhhccccceeeeccccceEEEecC----CCCceEEEEeeecCCC---eEEEEEeEecCC
Q 016020 88 RTKVIEIVAA------RDIVFALAHSGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKNND---SLITVSVYASDN 154 (396)
Q Consensus 88 RS~V~EIv~a------~dii~~L~~sG~c~af~~~t~~~ic~lN~----s~~evIrsifyN~~n~---slI~vSv~~sd~ 154 (396)
..+|.-|-+. +..+++-+..|....||..+++.+..+.. ..++-|.++-++...+ .++.+ ...|.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~--~~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV--AGSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE--EETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE--ecCCC
Confidence 3455555554 45577777888899999998888776653 3557788888887643 34442 22232
Q ss_pred CceeeeEeeehhhhhhCCCCCCCcceeec-ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe-----ccCc
Q 016020 155 FSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDKH 228 (396)
Q Consensus 155 ~s~L~cr~~~~~~i~~gk~~~~~~LF~~~-~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI-----s~~~ 228 (396)
.++.- ++..| .++..-. .-...--+.|.+.+|..++..+.|+.++|||+++.+.+..+ ....
T Consensus 96 --~i~v~-----d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 163 (366)
T 3k26_A 96 --IIRII-----NPITM-----QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163 (366)
T ss_dssp --EEEEE-----CTTTC-----CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred --EEEEE-----Echhc-----eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence 22222 22222 2222211 11122346788878999999999999999999999999998 3388
Q ss_pred eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE-------------------------eecccCCccchhhhhc
Q 016020 229 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-------------------------HLLHRNKKVDFIEQFN 283 (396)
Q Consensus 229 VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-------------------------~~L~~sk~i~FiE~~~ 283 (396)
|..+.++|+-..++.... ...+++|++.+|+.+..+. ....+...|.-+.-.+
T Consensus 164 v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 241 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGM--DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG 241 (366)
T ss_dssp EEEEEECTTSSEEEEEET--TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET
T ss_pred eeEEEECCCCCEEEEecC--CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC
Confidence 999999987666666655 4678999999987654322 1111444433232238
Q ss_pred ceeeEeecCCeeeEEEcccceE--------------EEecccccCCCceEEEeec--CeEEEEEEc-CeEEEEeccc-c-
Q 016020 284 EKLLVKQENENLQILDVRNAEL--------------MEVSRTEFMTPSAFIFLYE--NQLFLTFRN-RTVAVWNFRG-E- 344 (396)
Q Consensus 284 ekLLIKQed~~L~I~Dv~~~ki--------------~~v~~t~~~~PsAFiFly~--~qLFLTfs~-gti~iWd~~g-e- 344 (396)
++|+....|+.|++||+.+++. +.....+...+.+.-|.++ ++++++-+. |+|.+||++. +
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 8999999999999999998743 6677778888889999999 888888776 9999999987 3
Q ss_pred ---eeeeecccc--cc---CCCCCCCcEEEccCCcEEE
Q 016020 345 ---LVTSFEDHL--LW---HPDCNTNNIYITSDQDLII 374 (396)
Q Consensus 345 ---L~t~fedh~--l~---~~~c~~n~~~it~~qd~ii 374 (396)
+...+..|. -. ....+++++.+|+..|=.|
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 444777762 11 1125567777777666333
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-13 Score=114.74 Aligned_cols=146 Identities=15% Similarity=0.131 Sum_probs=113.7
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCc----eEEEEecc--CceEEEEEcC---CeEEEEEecCCCeeeeEEEEeecCc
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknY----s~lysIs~--~~VqEIkiSp---g~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
+.|++ +|+.++..+.|+.++|||+.+. +.+..+.+ ..|..++++| |.+|+.... +..++||++++|+
T Consensus 17 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~---dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 17 VVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY---DKTVKLWEEDPDQ 92 (351)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET---TSCEEEEEECTTS
T ss_pred EEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC---CCeEEEEecCCCc
Confidence 67887 8999999999999999999976 45555554 7899999998 666554443 4679999999984
Q ss_pred ---------EEEEEEeecccCCc---cchhhhh-cceeeEeecCCeeeEEEcccceE-----------------------
Q 016020 262 ---------VLKVFYHLLHRNKK---VDFIEQF-NEKLLVKQENENLQILDVRNAEL----------------------- 305 (396)
Q Consensus 262 ---------~l~s~~~~L~~sk~---i~FiE~~-~ekLLIKQed~~L~I~Dv~~~ki----------------------- 305 (396)
.+..+. .+... +.|.+.. +.+|++...|+.|++||+.+++.
T Consensus 93 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 93 EECSGRRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp CTTSSCSEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred ccccccCcceeeeec---ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 344443 45555 7787733 88899999999999999976542
Q ss_pred -------------------------------------EEecccccCCCceEEEeecC----eEEEEEEc-CeEEEEeccc
Q 016020 306 -------------------------------------MEVSRTEFMTPSAFIFLYEN----QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 306 -------------------------------------~~v~~t~~~~PsAFiFly~~----qLFLTfs~-gti~iWd~~g 343 (396)
+....+|.....+..|.+++ ++++|-+. |+|.+||++.
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 34455677788889999998 78888876 9999999986
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=124.84 Aligned_cols=182 Identities=12% Similarity=0.161 Sum_probs=142.7
Q ss_pred CCCC----eEEeeCCCCcEEEeecCCCeEEEEeccCceEEE--Eec---cCceEEEEEcCCeEEEEEecCCCeeeeEEEE
Q 016020 186 KWPG----FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 186 ~~Pg----fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~ly--sIs---~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~ 256 (396)
.||+ .+.|.+ +|+.|+..+.|+.+||||+.+.+.+. .+. ...|..+++||+-.+|+.... +..++||+
T Consensus 13 ~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~--D~~v~iw~ 89 (345)
T 3fm0_A 13 AHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF--DATTCIWK 89 (345)
T ss_dssp CSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET--TSCEEEEE
T ss_pred CCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC--CCcEEEEE
Confidence 4565 688998 89999999999999999999987443 232 267999999987666666665 56789999
Q ss_pred eecCcE--EEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEEeecCeEE
Q 016020 257 IEDGTV--LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLF 328 (396)
Q Consensus 257 IetG~~--l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiFly~~qLF 328 (396)
+.+++. +..+. .|... +.|.+ .+.+|+....|+.++|||+.++ ++..+...|.....+..|.++++++
T Consensus 90 ~~~~~~~~~~~~~---~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 90 KNQDDFECVTTLE---GHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp ECCC-EEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred ccCCCeEEEEEcc---CCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 998853 33343 56555 78888 8999999999999999999876 4566788899999999999999999
Q ss_pred EEEEc-CeEEEEeccc-c--eeeeeccccccCC---CCCCCcEEEccCCcEEE
Q 016020 329 LTFRN-RTVAVWNFRG-E--LVTSFEDHLLWHP---DCNTNNIYITSDQDLII 374 (396)
Q Consensus 329 LTfs~-gti~iWd~~g-e--L~t~fedh~l~~~---~c~~n~~~it~~qd~ii 374 (396)
++-+. ++|.+||.+. + ....+++|..+.. ..|++++++|...|=.|
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 99887 8999999987 3 4468888865432 26788888887776333
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-12 Score=113.21 Aligned_cols=252 Identities=10% Similarity=0.127 Sum_probs=169.1
Q ss_pred cceEEEeec-cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEe------cCC------C
Q 016020 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYA------SDN------F 155 (396)
Q Consensus 89 S~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~------sd~------~ 155 (396)
.+|.-+... ...++.-...|....||..+++....+... ...|.++-++.+...|++.+.-. -.+ .
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 344444332 446777788899999999999888887765 55678888888777666643210 000 1
Q ss_pred ceeeeEeeehhhhh-hCCC-----CCCC-cceee-----cccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceE
Q 016020 156 SSLKCRSTKIEYIR-RGKP-----DSGF-ALFES-----ESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM 220 (396)
Q Consensus 156 s~L~cr~~~~~~i~-~gk~-----~~~~-~LF~~-----~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~ 220 (396)
..++.+..++..+. .|+. ..|. .++.. ..-.+.+ -+.|.+.++..++....|+.+++||......
T Consensus 98 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 177 (313)
T 3odt_A 98 YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIK 177 (313)
T ss_dssp CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEE
T ss_pred cchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEE
Confidence 11111111111110 0000 0000 11110 0011233 3466666788888899999999999665555
Q ss_pred EEEe-ccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeee
Q 016020 221 LYSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQ 296 (396)
Q Consensus 221 lysI-s~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~ 296 (396)
.+.. ....|..+.++|+-.++ .... ...++|||+.+|+.+..+. .+... +.|.+ .+ +|++...|+.|+
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~-~~~~--dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGHFI-SCSN--DGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLP-NG-DIVSCGEDRTVR 249 (313)
T ss_dssp EECSSCSSCEEEEEEEETTEEE-EEET--TSEEEEEETTTCCEEEEEE---CCSSCEEEEEECT-TS-CEEEEETTSEEE
T ss_pred EEeccCcccEEEEEEcCCCeEE-EccC--CCeEEEEECCchhhhhhhh---cCCceEEEEEEec-CC-CEEEEecCCEEE
Confidence 5555 44889999999887744 4433 4679999999999999887 45454 77777 44 799999999999
Q ss_pred EEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeee
Q 016020 297 ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 297 I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~f 349 (396)
+||+.++++......+...+.+..|.++++++..-.+|+|.+||++. +++...
T Consensus 250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 250 IWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred EEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 99999999999988998899999999999977766669999999998 454433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=114.32 Aligned_cols=252 Identities=10% Similarity=0.131 Sum_probs=182.9
Q ss_pred cccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee
Q 016020 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (396)
Q Consensus 87 ~RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 164 (396)
....|..+... ...++.....|....||..+++.+..+. ...-|.++-++..+..+++.+.-....-..++...+
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~- 149 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI- 149 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe-
Confidence 34567666665 4577777888999999999999999887 566788898888777666643210000022322222
Q ss_pred hhhhhhCCCCC------CCc---ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccC-ceEEEEecc--CceEEE
Q 016020 165 IEYIRRGKPDS------GFA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD--KHVQEI 232 (396)
Q Consensus 165 ~~~i~~gk~~~------~~~---LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn-Ys~lysIs~--~~VqEI 232 (396)
..++... ..+ +..........-+.|++ +|+.++....|+.+++||+++ .+.+..+.. ..|..+
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 150 ----ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp ----EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred ----cCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 1211100 011 11111111445677888 888999999999999999999 888888875 789999
Q ss_pred EEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCC--------------eeeEE
Q 016020 233 KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE--------------NLQIL 298 (396)
Q Consensus 233 kiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~--------------~L~I~ 298 (396)
.++|+-.+|+.... ...+++||+.+|+.+..+.+. ..-..+.|.+ .+.+|++...+. .+++|
T Consensus 225 ~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (369)
T 3zwl_B 225 QFSPDLTYFITSSR--DTNSFLVDVSTLQVLKKYETD-CPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFY 300 (369)
T ss_dssp EECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECS-SCEEEEEECS-SSSEEEEEECCC-------------CEEEEE
T ss_pred EECCCCCEEEEecC--CceEEEEECCCCceeeeecCC-CCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEE
Confidence 99987766666655 456899999999999988721 2222377777 888999988777 89999
Q ss_pred EcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccc-eeeeec
Q 016020 299 DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGE-LVTSFE 350 (396)
Q Consensus 299 Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ge-L~t~fe 350 (396)
|+.+++.+....++...+.+..|.+++++++|.+. |+|.+||++.. +.-.++
T Consensus 301 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 354 (369)
T 3zwl_B 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD 354 (369)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred ecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence 99999999999999999999999999999999986 99999999883 433443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-13 Score=124.46 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=170.2
Q ss_pred cccceEEEeec-cchhhhhhccccceeeeccccceEEEec---CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEe
Q 016020 87 KRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLN---VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (396)
Q Consensus 87 ~RS~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~lN---~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~ 162 (396)
..+.|..+.+. +..+++-+..|....||..+|+.+..+. ..+...|.+|-++.....|++.| .|. .++ .
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs---~d~--~i~--i 153 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS---KDI--CIK--V 153 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTS--CEE--E
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe---CCC--eEE--E
Confidence 45667777665 4566677788999999999998765433 36788899999998777766643 222 222 2
Q ss_pred eehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEc
Q 016020 163 TKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKIS 235 (396)
Q Consensus 163 ~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiS 235 (396)
- ++..|+ ++..- -.|.+ -+.|.+.+..+++..+.|+.+||||+++.+.+..+.. ..+..+.++
T Consensus 154 w---d~~~~~-----~~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 154 W---DLAQQV-----VLSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp E---ETTTTE-----EEEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred E---ECCCCc-----EEEEE--cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 2 222222 22211 12333 3578875667888899999999999999998888753 458899999
Q ss_pred C-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhc-ceeeEeecCCeeeEEEcccceEEEecc
Q 016020 236 P-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFN-EKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 236 p-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
| +-.+++.... +..++|||+.+|+.+..+. .|... +.|.+ .+ .+|+...+|+.|+|||+.++++.+. .
T Consensus 224 p~~~~~l~sg~~--dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~~~~~~-~ 296 (344)
T 4gqb_B 224 PQQSEVFVFGDE--NGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLSELFRS-Q 296 (344)
T ss_dssp SSCTTEEEEEET--TSEEEEEESCC--CCEEEE---CCSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCCEEEEE-C
T ss_pred CCCCcceEEecc--CCcEEEEECCCCcEEEEEc---CCCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCcEEEE-c
Confidence 7 4555555554 4568999999999999887 56655 78887 55 4677899999999999999998865 6
Q ss_pred cccCCCceEEEeecCe-EEEEEE-cCeEEEEecccc
Q 016020 311 TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE 344 (396)
Q Consensus 311 t~~~~PsAFiFly~~q-LFLTfs-~gti~iWd~~ge 344 (396)
+|...+.+.-|.++++ |+.|-+ ||+|.+|++..+
T Consensus 297 ~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 8999999999999875 666777 599999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-13 Score=124.07 Aligned_cols=141 Identities=10% Similarity=0.171 Sum_probs=106.7
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhh-hcceeeEeecCCeeeEEEccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~ 302 (396)
..|..+.++|+-..++.... +..++|||+++|+.+..+. .|+.. ++|.+. .+.+|+....|+.+++||+.+
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~--D~~v~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASG--DGTCALWDVESGQLLQSFH---GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp SCEEEEEECSSSSEEEEEET--TSEEEEEETTTCCEEEEEE---CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred CcEEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEc---CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 44666677766544454444 5679999999999998887 66665 455442 467999999999999999999
Q ss_pred ceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeecccccc-----CCCCCCCcEEEccCCcE
Q 016020 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLW-----HPDCNTNNIYITSDQDL 372 (396)
Q Consensus 303 ~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~-----~~~c~~n~~~it~~qd~ 372 (396)
++++.+...|.....+.-|.+++++++|-+. |+|++||++. ..+..+..+... ....+++.+.+++..|=
T Consensus 230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306 (354)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC
Confidence 9999999999999999999999999999987 9999999987 455555443211 12256677776666653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=123.53 Aligned_cols=183 Identities=11% Similarity=0.127 Sum_probs=144.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE-EE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV-FY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s-~~ 267 (396)
+.|++ +|+.++..+.|+.++|||+.+.+.+..+.. ..|..+.++|+-.+++.... ...++||++.+++.... ..
T Consensus 61 ~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~ 137 (340)
T 1got_B 61 MHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL--DNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET--TCEEEEEETTTCSBSCEEEE
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC--CCeEEEEECccCCCcceeEE
Confidence 56776 789999999999999999999999888875 67999999988777777766 46789999998753221 12
Q ss_pred eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 268 HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
.+..|... +.|.+ +.+|+....|+.+++||+.+++.+.+..+|...+.+..|.++++++++-+. |+|.+||++.
T Consensus 138 ~~~~h~~~v~~~~~~~--~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~ 215 (340)
T 1got_B 138 ELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215 (340)
T ss_dssp EEECCSSCEEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EecCCCccEEEEEECC--CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 22255555 55654 456999999999999999999999999999999999999999999999886 9999999976
Q ss_pred -ceeeeeccccccCC---CCCCCcEEEccCCcEEEEecc
Q 016020 344 -ELVTSFEDHLLWHP---DCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 344 -eL~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~~ 378 (396)
+.+..|..|..... ..|++++++|...|=-|....
T Consensus 216 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 67788888765432 266788888877764444433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=120.51 Aligned_cols=225 Identities=14% Similarity=0.087 Sum_probs=159.6
Q ss_pred eeccccceEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeE
Q 016020 113 FSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFV 191 (396)
Q Consensus 113 f~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfV 191 (396)
++ .+|+.+..+...+...|.+|=++. +..-|++.| .|. ..+.-.++....|........+. --...--+
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s---~dg----~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~ 117 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGS---DQG----VIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQI 117 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE---TTS----EEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEE
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEec---CCc----eEEEeECcccccCcccceeeecc--CCCCEEEE
Confidence 54 678999999888888999999998 666665544 333 34445555554454222221221 11122346
Q ss_pred EeeCCCCcEEEeecCCCeEEEEecc---CceEEEEeccCceEEEEEcC-----------------CeEEEEEecCCCeee
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKHVQEIKISP-----------------GIMLLIFNRSSSHVP 251 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlk---nYs~lysIs~~~VqEIkiSp-----------------g~~Ll~~q~~~~~ip 251 (396)
.|.+ +|+.++..+.|+.++|||+. +.+.+.......+..+.++| |.+| +.... .-.
T Consensus 118 ~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~--d~~ 193 (437)
T 3gre_A 118 TMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL-VALTN--LSR 193 (437)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE-EEEET--TSE
T ss_pred EEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE-EEEeC--CCe
Confidence 8887 88899999999999999994 66666666656677777664 4444 44433 467
Q ss_pred eEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecc-cccCCCceEEE----ee
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIF----LY 323 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiF----ly 323 (396)
++|||+.+|+.+..+.... |... +.|.+ .+.+|++...|+.|+|||+++++++.... .+.....+..| .+
T Consensus 194 i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 194 VIIFDIRTLERLQIIENSP-RHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEEEETTTCCEEEEEECCG-GGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred EEEEeCCCCeeeEEEccCC-CCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 8999999999999887321 3344 78877 69999999999999999999999988654 55556677744 45
Q ss_pred cCeEEEEEEc-CeEEEEeccc-ceeeeecccc
Q 016020 324 ENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 324 ~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~ 353 (396)
+++++++-+. |+|.+||++. +.+..+..|-
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence 6778888876 8999999984 7777888774
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-12 Score=123.30 Aligned_cols=264 Identities=13% Similarity=0.228 Sum_probs=187.0
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
...|..+.+. ...++.....|....|+. +++.+-.+. .+..-|.++-++.....|++.| .|. .++.-..+-
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~---~d~--~i~~w~~~~ 334 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS---DDK--TVKLWNRNG 334 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEETTS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe-cCCCCeEEEEECCCCCEEEEEe---CCC--eEEEEeCCC
Confidence 3455555444 235666667778888884 566666664 4455677888888777776643 222 222211100
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEE
Q 016020 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIF 243 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~ 243 (396)
+.++ .+. ..-...--+.|.+ +|+.++....|+.+++||. +.+.+..+.+ ..|..+++||+-..|+.
T Consensus 335 ~~~~---------~~~-~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 335 QHLQ---------TLT-GHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp CEEE---------EEC-CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CeeE---------EEe-CCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 0000 000 0001112367877 8999999999999999995 5677777775 78999999987666666
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEE
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFi 320 (396)
... .-.++||+ .+|+.+..+. .|+.. +.|.+ .+++|++...|+.+++||+ +++++.....|...+.+.-
T Consensus 403 ~~~--d~~v~~~~-~~~~~~~~~~---~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 474 (577)
T 2ymu_A 403 ASD--DKTVKLWN-RNGQLLQTLT---GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 474 (577)
T ss_dssp EET--TSEEEEEC-TTCCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE
T ss_pred EeC--CCEEEEEe-CCCCEEEEec---CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEE
Confidence 555 35678999 5788887776 55555 67877 8899999999999999995 7788888889999999999
Q ss_pred EeecCeEEEEEEc-CeEEEEecccceeeeeccccccCC---CCCCCcEEEccCCcEEEEecc
Q 016020 321 FLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHLLWHP---DCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 321 Fly~~qLFLTfs~-gti~iWd~~geL~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~~ 378 (396)
|.+++++++|.+. ++|++||..|+++..++.|-.... ..|++++.+|+..|=.|.-..
T Consensus 475 ~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 475 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999999887 899999999999999998865432 267888888888775555444
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=118.26 Aligned_cols=258 Identities=11% Similarity=0.094 Sum_probs=180.7
Q ss_pred cceEEEeeccc---hhhhhhccccceeeec----cccc------eEEEecCC---------CCceEEEEeeecCCCeEEE
Q 016020 89 TKVIEIVAARD---IVFALAHSGVCAAFSR----ETNR------RICFLNVS---------PDEVIRSLFYNKNNDSLIT 146 (396)
Q Consensus 89 S~V~EIv~a~d---ii~~L~~sG~c~af~~----~t~~------~ic~lN~s---------~~evIrsifyN~~n~slI~ 146 (396)
.+|.-+....| +++.-...|....|+. .+++ ..+.+... +..-|.++-++.+..-|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 44555554433 6777777899999999 8888 56655542 4557899999987666665
Q ss_pred EEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeec-ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec
Q 016020 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (396)
Q Consensus 147 vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~-~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs 225 (396)
.+ .|. .++... ..| .++..-. .-...--+.|++ +|+.++..+.|+.+++||+.+.+.+..+.
T Consensus 126 ~~---~dg--~i~i~~------~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 126 GV---ENG--ELRLWN------KTG-----ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EE---TTS--CEEEEE------TTS-----CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred Ee---CCC--eEEEEe------CCC-----CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 33 222 233221 111 1111110 011122467877 78888888899999999999999988887
Q ss_pred cC--c---------------eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcce
Q 016020 226 DK--H---------------VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEK 285 (396)
Q Consensus 226 ~~--~---------------VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ek 285 (396)
.. . +..+.++|+-.+++... ...+.+|++.+++.+..+. .+... +.|.+ .+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~ 261 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP---KGAIFVYQITEKTPTGKLI---GHHGPISVLEFND-TNKL 261 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEECG---GGCEEEEETTCSSCSEEEC---CCSSCEEEEEEET-TTTE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC---CCeEEEEEcCCCceeeeec---cCCCceEEEEECC-CCCE
Confidence 62 2 88999998877655544 3679999999999888776 44444 77777 7889
Q ss_pred eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCC---CCC
Q 016020 286 LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHP---DCN 360 (396)
Q Consensus 286 LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~---~c~ 360 (396)
|++...|+.|++||+.+++.......+...+.+..|.+++ ++++.+. |+|.+||++. +++..+..|..... ..+
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999999999999999999888899999999999999 6666655 9999999976 67777776643322 256
Q ss_pred CCcEEEccCCc
Q 016020 361 TNNIYITSDQD 371 (396)
Q Consensus 361 ~n~~~it~~qd 371 (396)
+++++++...|
T Consensus 341 ~~~~l~~~~~d 351 (425)
T 1r5m_A 341 DGQKYAVAFMD 351 (425)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEEECC
Confidence 67777766665
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-13 Score=122.31 Aligned_cols=179 Identities=14% Similarity=0.157 Sum_probs=139.4
Q ss_pred CCCCcEEEeecCCCeEEEEeccCc-------eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 195 DVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 195 d~NgkIlt~~a~d~~YrVwdlknY-------s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
+.+|+.|+..+.|+++||||+.+. ..+..+.+ ..|..+.++|+-.+++.... +..++|||+++|+.+..
T Consensus 36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~--D~~v~lwd~~~~~~~~~ 113 (343)
T 2xzm_R 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW--DKTLRLWDLRTGTTYKR 113 (343)
T ss_dssp TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET--TSEEEEEETTSSCEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC--CCcEEEEECCCCcEEEE
Confidence 347899999999999999999753 35556655 78999999987766666665 67899999999999988
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec--ccccCCCceEEEeecC----------eEEEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYEN----------QLFLT 330 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~--~t~~~~PsAFiFly~~----------qLFLT 330 (396)
+. .|... +.|.+ .+.+|+....|+.+++||+......... ..+.....+.-|.+++ +++++
T Consensus 114 ~~---~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s 189 (343)
T 2xzm_R 114 FV---GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189 (343)
T ss_dssp EE---CCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred Ec---CCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence 77 56565 78887 7899999999999999999865544432 3677778888888876 67888
Q ss_pred EEc-CeEEEEecccceeeeeccccccCC---CCCCCcEEEccCCcEEEEeccC
Q 016020 331 FRN-RTVAVWNFRGELVTSFEDHLLWHP---DCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 331 fs~-gti~iWd~~geL~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~~~ 379 (396)
.+. |+|.+||..+++...+..|.-+.. ..|++++++|...|=.|.....
T Consensus 190 ~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 190 VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 776 999999988888888888865432 2678888888877755444443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-12 Score=113.38 Aligned_cols=224 Identities=10% Similarity=0.111 Sum_probs=164.1
Q ss_pred chhhhhhccccceeeeccccc--eEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 016020 99 DIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~--~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 176 (396)
.++++-...|....||..+++ .+..+. .+..-|.++-++.+.+.|++.| .|. .++.-.+ ..++.
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~---~dg--~i~vwd~-----~~~~~--- 86 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG---TDR--NAYVWTL-----KGRTW--- 86 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE---TTS--CEEEEEE-----ETTEE---
T ss_pred CEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc---CCC--eEEEEEC-----CCCee---
Confidence 355555678999999999987 566665 4566788899998777666643 222 2333322 11110
Q ss_pred Cccee-ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce---EEEEec---cCceEEEEEcCCeEEEEEecCCCe
Q 016020 177 FALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS---DKHVQEIKISPGIMLLIFNRSSSH 249 (396)
Q Consensus 177 ~~LF~-~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs---~lysIs---~~~VqEIkiSpg~~Ll~~q~~~~~ 249 (396)
.+.+. ...-...--+.|++ +|+.++....|+.+++||+.+.+ ....+. ...|..+.++|+-.+++.... .
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d 163 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--D 163 (372)
T ss_dssp EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--T
T ss_pred eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC--C
Confidence 00111 00111233577887 78889989999999999999876 344442 378999999987665566554 4
Q ss_pred eeeEEEEee------------------cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe
Q 016020 250 VPLKILSIE------------------DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (396)
Q Consensus 250 iplkIl~Ie------------------tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v 308 (396)
..++|||+. +|+.+..+. .+... +.|.+ .+++|+....|+.|++||+.+++.+..
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 578999954 788877765 44444 77777 788999999999999999999999999
Q ss_pred cccccCCCceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 309 SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 309 ~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
...+..++.+..|.++++++.+-++|.|.+||.+.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 89998899999999999999998889999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=118.85 Aligned_cols=244 Identities=12% Similarity=0.144 Sum_probs=171.6
Q ss_pred cccceEEEeec--cchhhhhhccccceeeeccc----cceEEEecCCCCceEEEEeeecC-CCeEEEEEeEecCCCceee
Q 016020 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLK 159 (396)
Q Consensus 87 ~RS~V~EIv~a--~dii~~L~~sG~c~af~~~t----~~~ic~lN~s~~evIrsifyN~~-n~slI~vSv~~sd~~s~L~ 159 (396)
...+|..+-.. ..++++-...|....||..+ .+.+..+.. +..-|.++-++.. ..-|++.| .|. .
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~---~dg--~-- 137 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGG---NNG--E-- 137 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEEC---SSS--C--
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEc---CCC--e--
Confidence 35667777665 34666666789999999887 346666654 5556778888876 44444422 222 1
Q ss_pred eEeeehhhhhhCCCCC-CCcceee----cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--------
Q 016020 160 CRSTKIEYIRRGKPDS-GFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------- 226 (396)
Q Consensus 160 cr~~~~~~i~~gk~~~-~~~LF~~----~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-------- 226 (396)
+.+=++..++... ....+.. ..-...--+.|++.++..++....|+.+++||+++.+.+..+..
T Consensus 138 ---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 138 ---IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp ---EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred ---EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 2222333332100 0011111 11122345789886689999999999999999999999988874
Q ss_pred CceEEEEEcCCe--EEEEEecCCCeeeeEEEEeecCc-EEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEc
Q 016020 227 KHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDV 300 (396)
Q Consensus 227 ~~VqEIkiSpg~--~Ll~~q~~~~~iplkIl~IetG~-~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv 300 (396)
..|..+.++|+- +|+..........++|||+.+++ .+..+. ..+... +.|.+..+.+|++...|+.|++||+
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 569999999863 44444443333489999999984 444332 023333 7888878999999999999999999
Q ss_pred ccceEEEecccccCCCceEEEeecC-eEEEEEEc-CeEEEEeccc
Q 016020 301 RNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 301 ~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~g 343 (396)
.+++.+.....|...+.+..|.+++ +++++-+. |+|.+||++.
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 9999999999999999999999998 78888876 9999999987
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-13 Score=120.93 Aligned_cols=179 Identities=11% Similarity=0.151 Sum_probs=139.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCc-----eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknY-----s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+.|.+..+..++..+.|+++++||+.+. ..+.++.+ ..|..+.++|+-.+++.... +..++|||+++|+.+
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--D~~v~~wd~~~~~~~ 100 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW--DKTLRLWDVATGETY 100 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC--CCEEEEEECCCCCee
Confidence 4677767789999999999999999753 24555554 78999999988777777665 678999999999998
Q ss_pred EEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC------eEEEEEEc-
Q 016020 264 KVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN------QLFLTFRN- 333 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~------qLFLTfs~- 333 (396)
..+. .|... ++|.+ .+..|+....|+.+++||+.. ++.....+|.....+..|.+.. .++++-+.
T Consensus 101 ~~~~---~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d 175 (319)
T 3frx_A 101 QRFV---GHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175 (319)
T ss_dssp EEEE---CCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETT
T ss_pred EEEc---cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCC
Confidence 8877 66665 67777 789999999999999999975 5556667888888999998854 46777776
Q ss_pred CeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCcEEEEe
Q 016020 334 RTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQDLIISY 376 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~ 376 (396)
++|++||++. ++...+..|..... ..|++++++|...|=.|-.
T Consensus 176 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 176 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp SCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999987 67788888855432 2677888888777744433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=129.08 Aligned_cols=183 Identities=11% Similarity=0.081 Sum_probs=130.3
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCc--eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknY--s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
-+.|++ +|+.++..+.|+.++|||+.+. +.+..+.+ ..|..++++|+--+|+.... +..++||++++|+....
T Consensus 16 ~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 16 EHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ--DRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET--TSSEEEC------CCCC
T ss_pred EEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCCceee
Confidence 357787 8999999999999999999998 77777765 78999999987555555554 46799999999982222
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccce---EEEeccc-ccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRT-EFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k---i~~v~~t-~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
...+..+... +.|.+ .+.+|++...|+.+++||+.+++ +...... |...+.+.-|.++++++++-+. |+|.
T Consensus 93 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 2223355555 77777 78999999999999999999987 3444444 8999999999999999888876 8999
Q ss_pred EEecc-------------------cceeeeeccccccCC---CCCCCcEEEccCCcEEEEec
Q 016020 338 VWNFR-------------------GELVTSFEDHLLWHP---DCNTNNIYITSDQDLIISYC 377 (396)
Q Consensus 338 iWd~~-------------------geL~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~ 377 (396)
+||++ ++++..+ .|.-+.. .++++++++|...|=-|.-.
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99985 5666666 6643322 26788888887777444333
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=113.77 Aligned_cols=267 Identities=11% Similarity=0.082 Sum_probs=188.0
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
..+|.-+... ..++++-...|....||..+++.+..+... ..-|.++-++...+.|++.| .|. .++.-
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~---~dg--~i~iw---- 101 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-TGTIWSIDVDCFTKYCVTGS---ADY--SIKLW---- 101 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEE---TTT--EEEEE----
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-CCcEEEEEEcCCCCEEEEEe---CCC--eEEEE----
Confidence 4455555554 345666677899999999999999888654 45678888887766666543 232 22222
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCC-----CeEEEEeccCceEEEEe-----------cc---
Q 016020 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTMLYSI-----------SD--- 226 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d-----~~YrVwdlknYs~lysI-----------s~--- 226 (396)
++..|+ .+..-..-..+--+.|++ +|+.++....+ +.+++||+.+.+....+ ..
T Consensus 102 -d~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 102 -DVSNGQ-----CVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp -ETTTCC-----EEEEEECSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred -ECCCCc-----EEEEeecCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 222222 222222222344578888 78888888877 99999999887532211 11
Q ss_pred -CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcc
Q 016020 227 -KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 227 -~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
..+..+.++|+-.+++.... ...+.+||+.+ ++.+..+. .+... +.|.+ .+.+|++...|+.|++||+.
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHK--DGKISKYDVSNNYEYVDSID---LHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEET--TSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ccceeEEEEcCCCCEEEEEcC--CCEEEEEECCCCcEeEEEEe---cCCCceeEEEECC-CCCEEEEecCCceEEEEECC
Confidence 18999999987666666555 46789999999 67777666 34444 77887 78999999999999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEEc-C--------------eEEEEeccc-ceeeeeccccccCC---CCCCC
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R--------------TVAVWNFRG-ELVTSFEDHLLWHP---DCNTN 362 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g--------------ti~iWd~~g-eL~t~fedh~l~~~---~c~~n 362 (396)
++++..... +...+.+..|.++++.+++-.. + .+.+||... +.+..+..|.-... .++++
T Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 249 TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence 999888665 6677888999999998887776 4 899999987 67888887754432 26788
Q ss_pred cEEEccCCcEEEEecc
Q 016020 363 NIYITSDQDLIISYCK 378 (396)
Q Consensus 363 ~~~it~~qd~ii~~~~ 378 (396)
++++|...|=-|...+
T Consensus 328 ~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHH 343 (369)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 8888887775444443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-12 Score=117.17 Aligned_cols=255 Identities=9% Similarity=0.124 Sum_probs=181.4
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 178 (396)
+.+++.+..|....||..+|+....+...+...|.++-++...+-|++.+ .|. .++.-. +..|+ .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~---~dg--~i~iwd-----~~~~~-----~ 168 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL---GNG--LVDIYD-----VESQT-----K 168 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE---TTS--CEEEEE-----TTTCC-----E
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC---CCC--eEEEEE-----CcCCe-----E
Confidence 44666778899999999999999999988889999999998666555533 222 222221 12221 1
Q ss_pred ceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEecc-CceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 179 LFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 179 LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
+..-. .|.+ -+.| ++..++..+.|+.+++||++ ....+..+.+ ..|..+.++|+-.+++.... ...+
T Consensus 169 ~~~~~--~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~v 241 (401)
T 4aez_A 169 LRTMA--GHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN--DNVV 241 (401)
T ss_dssp EEEEC--CCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCE
T ss_pred EEEec--CCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC--CCeE
Confidence 11110 2222 2445 56799999999999999999 4556666654 78999999987666666555 4578
Q ss_pred EEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeE---eecCCeeeEEEcccceEEEecccccCCCceEEEeecCe
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLV---KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLI---KQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q 326 (396)
+|||+.+++.+..+. .+... +.|.+ .+.+|++ +..|+.|++||+.+++.+.... +...+.+..|.++++
T Consensus 242 ~iwd~~~~~~~~~~~---~~~~~v~~~~~~p-~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 242 QIWDARSSIPKFTKT---NHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEETTCSSEEEEEC---CCSSCCCEEEECT-TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred EEccCCCCCccEEec---CCcceEEEEEECC-CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence 999999999988776 34433 78887 5555655 4489999999999999888765 446789999999999
Q ss_pred EEEEEE---cCeEEEEeccc-ceee--eeccccccCC---CCCCCcEEEccCCcEEEEeccCC
Q 016020 327 LFLTFR---NRTVAVWNFRG-ELVT--SFEDHLLWHP---DCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 327 LFLTfs---~gti~iWd~~g-eL~t--~fedh~l~~~---~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
++++.+ +|+|.+||.+. ++.. .+..|..... ..+++.+++|+..|=.|...+..
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 999876 69999999988 3333 4556654332 26678888877777555555544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-12 Score=115.67 Aligned_cols=235 Identities=13% Similarity=0.123 Sum_probs=158.2
Q ss_pred ceEEEeeccchhhhhhccccceeeeccccc--eEEEecCC-CCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 90 KVIEIVAARDIVFALAHSGVCAAFSRETNR--RICFLNVS-PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 90 ~V~EIv~a~dii~~L~~sG~c~af~~~t~~--~ic~lN~s-~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
+|.-+-+..++++.-...|....||..+++ .+..+... +..-|++|=++....-|++.| .|. .++.-.. +
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s---~D~--~v~iw~~--~ 88 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS---FDS--TVSIWAK--E 88 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE---TTS--CEEEEEC---
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe---CCC--cEEEEEc--c
Confidence 344444455666666677899999988764 45566444 788899999998777665543 232 2332221 1
Q ss_pred hhhhCCCC--CCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEecc----CceEEEEecc--CceEEEEEc
Q 016020 167 YIRRGKPD--SGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSISD--KHVQEIKIS 235 (396)
Q Consensus 167 ~i~~gk~~--~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlk----nYs~lysIs~--~~VqEIkiS 235 (396)
.++.. ...++.. .-.|.+ -+.|++ +|+.|+..+.|+.+++||+. .++++..+.+ ..|..+.++
T Consensus 89 ---~~~~~~~~~~~~~~--~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 89 ---ESADRTFEMDLLAI--IEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ---------CCCEEEEE--EC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred ---cCcCccccceeEEE--EcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 11100 1111110 112333 467887 79999999999999999994 3567777765 779999999
Q ss_pred CCeEEEEEecCCCeeeeEEEEeecC--cEEEEEEeecccCCc---cchhhhh-cceeeEeecCCeeeEEEcccc------
Q 016020 236 PGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHLLHRNKK---VDFIEQF-NEKLLVKQENENLQILDVRNA------ 303 (396)
Q Consensus 236 pg~~Ll~~q~~~~~iplkIl~IetG--~~l~s~~~~L~~sk~---i~FiE~~-~ekLLIKQed~~L~I~Dv~~~------ 303 (396)
|+-.+|+.... +..++||++.++ +.+..+. .|... ++|.+.. +..|+....|+.++|||+.++
T Consensus 163 p~~~~l~s~s~--D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 163 PSEALLASSSY--DDTVRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp SSSSEEEEEET--TSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred CCCCEEEEEcC--CCeEEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 87766677666 567899999988 4555554 56555 6777632 457889999999999999876
Q ss_pred --eEEEeccc-ccCCCceEEEeecCeEEEEEE-cCeEEEEeccc
Q 016020 304 --ELMEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG 343 (396)
Q Consensus 304 --ki~~v~~t-~~~~PsAFiFly~~qLFLTfs-~gti~iWd~~g 343 (396)
++..+... |...+.+.-|.+++ ++++.+ +|+|.+||...
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 44444444 77888888898666 555555 59999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=117.20 Aligned_cols=184 Identities=9% Similarity=0.103 Sum_probs=143.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
-+.|++ +|+.++....|+.++|||+.+.+ .+..+.+ ..|..+.++|+--+++.... ...++||++++|+....
T Consensus 13 ~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 13 CHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp EEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEE
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC--CCeEEEEECCCCeeeee
Confidence 467887 78999999999999999999987 8888865 78999999976655555554 46799999999987666
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccce----EEEecccccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k----i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
+.. ..+... +.|.+ .+.+|++...|+.+++||+.+++ +......+...+.+..|.++++++++-+. |+|.
T Consensus 90 ~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 90 LVI-LRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEC-CCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEe-ecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 552 244444 77777 78999999999999999999987 45566778889999999999999888875 9999
Q ss_pred EEecc-------------------cceeeeeccccccCCC---CCCCcEEEccCCcEEEEecc
Q 016020 338 VWNFR-------------------GELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 338 iWd~~-------------------geL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~ 378 (396)
+||++ ++++..+..|.-+... .++++.+++..+|=.|....
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99974 5778888777543222 56777777777664444443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=118.24 Aligned_cols=245 Identities=16% Similarity=0.191 Sum_probs=175.1
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
...|..+... ..++++-...|....|| .+++.+..+.. +..-|.++-++..+..|++.+. |. .++. .++
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~--~i~i--wd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIISMDV---EN--VTIL--WNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEEEET---TC--CEEE--EET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEEEec---CC--eEEE--EEC
Confidence 3467777666 34777778889999999 77888888864 4556788988887777776442 22 2222 211
Q ss_pred hhhhhCCCCCCCcceeec-----------ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEE
Q 016020 166 EYIRRGKPDSGFALFESE-----------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEI 232 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~-----------~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEI 232 (396)
..|+.-.....-... .-...--+.|.+ ++. ++....++.+++||+++.+.+..+.. ..|..+
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 179 ---ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-DDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp ---TTTEEEEEECCC---------------CCCBSCCEEEE-TTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred ---CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-CCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 111110000000000 000023355555 455 55567799999999999998877764 789999
Q ss_pred EEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec
Q 016020 233 KISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (396)
Q Consensus 233 kiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~ 309 (396)
.++|+--+++.... ...++||++.+|+.+..+. .+... +.|.+ .+ +|++...|+.|++||+.+++.+...
T Consensus 254 ~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 254 EFNDTNKLLLSASD--DGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp EEETTTTEEEEEET--TSCEEEECSSSBSCSEEEC---CCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEcC--CCEEEEEECCCCccceEec---CCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 99987655555554 4568999999999988876 34444 67777 45 9999999999999999999999999
Q ss_pred ccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-c--------------------eeeeecccc
Q 016020 310 RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-E--------------------LVTSFEDHL 353 (396)
Q Consensus 310 ~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-e--------------------L~t~fedh~ 353 (396)
..+...+.+..|.++++++++-+. |+|.+||++. + ++..+..|.
T Consensus 327 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (425)
T 1r5m_A 327 IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ 392 (425)
T ss_dssp ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTT
T ss_pred ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc
Confidence 999999999999999999888876 8999999987 6 778888773
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=124.42 Aligned_cols=248 Identities=11% Similarity=0.106 Sum_probs=168.5
Q ss_pred ccceEEEeecc---chhhhhhccccceeeeccc---cc-eEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeee
Q 016020 88 RTKVIEIVAAR---DIVFALAHSGVCAAFSRET---NR-RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (396)
Q Consensus 88 RS~V~EIv~a~---dii~~L~~sG~c~af~~~t---~~-~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~c 160 (396)
...|..+.+.. .+++.-...|....||..+ ++ ..|.+...+..-|.+|-++...+.|++.| .|. .++.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~dg--~i~v 137 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS---KDG--QIIV 137 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe---CCC--EEEE
Confidence 35666666655 4777777889999999877 54 22333334677899999998666666543 222 2332
Q ss_pred EeeehhhhhhCCCCCCCcceee-----cccC---CCCeE---E--eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-
Q 016020 161 RSTKIEYIRRGKPDSGFALFES-----ESLK---WPGFV---E--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD- 226 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~-----~~l~---~PgfV---E--FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~- 226 (396)
-.+ +.-..|+.- ..+.. ..+. +.+++ . +. .+|..++....|+.+++||+++.+.+..+..
T Consensus 138 wd~--~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 138 LKV--NHYQQESEV---KFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp EEE--EEEEETTEE---EEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEe--ccccCCcee---eccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 222 111111110 00000 0000 11111 1 22 3688999999999999999999999999975
Q ss_pred ---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---c----chhhhhcceeeEeecCCeee
Q 016020 227 ---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---V----DFIEQFNEKLLVKQENENLQ 296 (396)
Q Consensus 227 ---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i----~FiE~~~ekLLIKQed~~L~ 296 (396)
..|..+.++|+-.+|+.... +..++|||+.+|+.+..+.+ .+... + .|.+ .+.+|+....|+.|+
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~-~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTT--RGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGK-NSVIVVGGSSKTFLT 286 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCT-TEEEEEEESTTEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcC--CCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCC-CccEEEEEcCCCcEE
Confidence 78999999988777676666 46789999999999998762 33334 4 3333 577999999999999
Q ss_pred EEEcccceEEEecccccCC--------------------------CceEEEeecCeEEEEEEc-CeEEEEeccc-ceeee
Q 016020 297 ILDVRNAELMEVSRTEFMT--------------------------PSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTS 348 (396)
Q Consensus 297 I~Dv~~~ki~~v~~t~~~~--------------------------PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~ 348 (396)
|||+.++++..+..++... ..+.-|. ++++++|-+. |+|.+||++. +....
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9999999998877655433 3455666 6788888885 9999999986 66666
Q ss_pred eccc
Q 016020 349 FEDH 352 (396)
Q Consensus 349 fedh 352 (396)
+..|
T Consensus 366 ~~~~ 369 (437)
T 3gre_A 366 VISP 369 (437)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7665
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=117.54 Aligned_cols=222 Identities=13% Similarity=0.073 Sum_probs=156.7
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
...+++-...|....||..+++.+..+. .+..-|.++-++...+.|++.| .|. .+ +.- ++..|+.
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s---~d~--~i--~iw---d~~~~~~---- 173 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSS---QDM--QL--KIW---SVKDGSN---- 173 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEE---TTS--EE--EEE---ETTTCCC----
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEe---CCC--eE--EEE---eCCCCcC----
Confidence 3467777788999999999998877765 4556788899998777666543 222 22 222 2333332
Q ss_pred cceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEE---------------
Q 016020 178 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKI--------------- 234 (396)
Q Consensus 178 ~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIki--------------- 234 (396)
+..- -.|.+ -+.|++ +|+.++..+.|+.+++||+++.+.+..+.. ..|..+.+
T Consensus 174 -~~~~--~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 174 -PRTL--IGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp -CEEE--ECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred -ceEE--cCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 1110 12444 367887 788888899999999999999999999864 44555554
Q ss_pred ------cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcc-eeeEeecCCeeeEEEcccce
Q 016020 235 ------SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNE-KLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 235 ------Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~e-kLLIKQed~~L~I~Dv~~~k 304 (396)
||+-.+++.... ...++|||+.+|+.+..+.. ++... +.|.+ .+. +|++...|+.|++||+.+++
T Consensus 250 v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHV--SGVITVHNVFSKEQTIQLPS--KFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCTTCSSCTTEEEEEEET--TSCEEEEETTTCCEEEEECC--TTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTT
T ss_pred ccceEEcCCCCEEEEEcC--CCeEEEEECCCCceeEEccc--ccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCc
Confidence 555444555444 45689999999998887642 34443 78887 555 99999999999999999975
Q ss_pred E-EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 305 L-MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 305 i-~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
. +.....+...|-..++.+++++++|.+. |+|.+||+..
T Consensus 325 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 325 CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 3 5555554445555567788999998886 8999999876
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=121.79 Aligned_cols=262 Identities=14% Similarity=0.137 Sum_probs=181.0
Q ss_pred hccccceeeeccccceE-EEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-
Q 016020 105 AHSGVCAAFSRETNRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES- 182 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~i-c~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~- 182 (396)
...|....||..+++.. +........-|.++-++.+..-|++.+ .|. .++.-.+ +....| ..++..-
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg--~v~vw~~--~~~~~~----~~~~~~~~ 110 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL---DNG--SLELYST--NEANNA----INSMARFS 110 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE---SSS--CEEEECC--SSTTSC----CCEEEECC
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc---cCC--eEEEeec--cccccc----ccchhhcc
Confidence 56678889998888632 333334667789999987766665533 222 2322222 111111 1111111
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce------EEEEe-----ccCceEEEEEcCC-eEEEEEecCCCee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------MLYSI-----SDKHVQEIKISPG-IMLLIFNRSSSHV 250 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs------~lysI-----s~~~VqEIkiSpg-~~Ll~~q~~~~~i 250 (396)
..-...--+.|++.++..++..+.|+.++|||+.+.+ ..+.+ ....|..+.++|+ -.+++.... ..
T Consensus 111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 188 (416)
T 2pm9_A 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS--SN 188 (416)
T ss_dssp CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS--SS
T ss_pred CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC--CC
Confidence 1111233578988668899999999999999999987 55555 3378999999986 444455444 46
Q ss_pred eeEEEEeecCcEEEEEEeeccc---CCc---cchhhhhcceeeEeecCC---eeeEEEcccc-eEEEecc-cccCCCceE
Q 016020 251 PLKILSIEDGTVLKVFYHLLHR---NKK---VDFIEQFNEKLLVKQENE---NLQILDVRNA-ELMEVSR-TEFMTPSAF 319 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~L~~---sk~---i~FiE~~~ekLLIKQed~---~L~I~Dv~~~-ki~~v~~-t~~~~PsAF 319 (396)
.++|||+.+|+.+..+...-.. ... +.|.+.-...|++..+|+ .|++||+.++ +...... .|...+.+.
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence 6999999999998887732100 233 788874346788888988 9999999996 6666766 888999999
Q ss_pred EEee-cCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCC-cEEEccCCcEEEEeccC
Q 016020 320 IFLY-ENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTN-NIYITSDQDLIISYCKA 379 (396)
Q Consensus 320 iFly-~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n-~~~it~~qd~ii~~~~~ 379 (396)
.|.+ +++++++-+. |+|.+||++. +.+..+..|.-+... ++++ .+++|...|=-|...+.
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 9999 8888888886 9999999986 788888887655433 6777 78888887755554443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-12 Score=119.36 Aligned_cols=231 Identities=16% Similarity=0.288 Sum_probs=165.7
Q ss_pred cccceEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 87 ~RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
....|..+-...++++.-...|....||..+++.+..+.. +...|.++-++. +.+++.| .|. .++.-.+
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~l~s~s---~dg--~i~~wd~--- 226 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--KRVVSGS---RDA--TLRVWDI--- 226 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEEEE---TTS--EEEEEES---
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--CEEEEEe---CCC--EEEEEEC---
Confidence 3456777777778888888999999999999999988874 445667787763 4444432 222 2332222
Q ss_pred hhhhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEE
Q 016020 167 YIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLL 241 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll 241 (396)
..| .++..- -.|.+ -+.| +|..++..+.|+.+++||+++.+.+.++.+ ..|..+.+ +|..++
T Consensus 227 --~~~-----~~~~~~--~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~ 293 (445)
T 2ovr_B 227 --ETG-----QCLHVL--MGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVV 293 (445)
T ss_dssp --SSC-----CEEEEE--ECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEE
T ss_pred --CCC-----cEEEEE--cCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEE
Confidence 222 222111 12333 3445 578888889999999999999999999976 77999999 454444
Q ss_pred EEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc---ccCCCce
Q 016020 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSA 318 (396)
Q Consensus 242 ~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t---~~~~PsA 318 (396)
.... ...+++||+.+|+.+..+. .+...+.-+...+++|++...|+.|++||+.+++....... +...+.+
T Consensus 294 ~~~~---d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 294 SGSL---DTSIRVWDVETGNCIHTLT---GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367 (445)
T ss_dssp EEET---TSCEEEEETTTCCEEEEEC---CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred EEeC---CCeEEEEECCCCCEEEEEc---CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEE
Confidence 4333 3568999999999998876 55556555555788999999999999999999998887665 5566666
Q ss_pred EEEeecCeEEEEEEc-CeEEEEeccc-ceeeee
Q 016020 319 FIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 319 FiFly~~qLFLTfs~-gti~iWd~~g-eL~t~f 349 (396)
+-| +++++++-+. |+|.+||++. +++..+
T Consensus 368 ~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 368 LQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEE--CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCceeeee
Confidence 666 4567777664 9999999985 677666
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-12 Score=109.73 Aligned_cols=232 Identities=12% Similarity=0.118 Sum_probs=160.2
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEe
Q 016020 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTY 203 (396)
Q Consensus 127 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~ 203 (396)
.+.+.|.++-++..+.-|++.+ |. .++. - ++..++... ++..-....+++ .+.|++ +|+.++.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~----dg--~i~i--w---~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 114 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG----KG--CVKV--W---DISHPGNKS--PVSQLDCLNRDNYIRSCKLLP-DGCTLIV 114 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC----BS--EEEE--E---ETTSTTCCS--CSEEEECSCTTSBEEEEEECT-TSSEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC----CC--eEEE--E---ECCCCCcee--eeecccccCCCCcEEEEEEcC-CCCEEEE
Confidence 4677888898887666555422 32 2222 2 222222111 121111112333 467888 7888888
Q ss_pred ecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---c
Q 016020 204 SAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---V 276 (396)
Q Consensus 204 ~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i 276 (396)
...|+.+++||+.+.+ ....+.. ..|..+.++|+-.+++.... ...+++|++.+|+.+..+. .+... +
T Consensus 115 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~---~~~~~i~~~ 189 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQ---GHTDGASCI 189 (337)
T ss_dssp EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEEC---CCSSCEEEE
T ss_pred EcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeee---cccCceEEE
Confidence 8999999999999987 5555554 67999999987655555554 3568999999999988876 34444 6
Q ss_pred chhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecccceeeeecccccc
Q 016020 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHLLW 355 (396)
Q Consensus 277 ~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~geL~t~fedh~l~ 355 (396)
.|.+ .+++|++...|+.+++||+.+++..... .+...+.+..|.++++++++-+. |.|.+||++......+..|.-.
T Consensus 190 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 267 (337)
T 1gxr_A 190 DISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267 (337)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC
T ss_pred EECC-CCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc
Confidence 7777 7889999999999999999999888764 35567888999999998888775 9999999998544455555433
Q ss_pred CC---CCCCCcEEEccCCcEEEEeccC
Q 016020 356 HP---DCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 356 ~~---~c~~n~~~it~~qd~ii~~~~~ 379 (396)
.. .+++++++++...|=.|...+.
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEEC
Confidence 22 2667777777766644444443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-12 Score=110.48 Aligned_cols=243 Identities=9% Similarity=0.103 Sum_probs=161.4
Q ss_pred cceEEEeec---cchhhhhhccccceeeeccccc-----eEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeee
Q 016020 89 TKVIEIVAA---RDIVFALAHSGVCAAFSRETNR-----RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (396)
Q Consensus 89 S~V~EIv~a---~dii~~L~~sG~c~af~~~t~~-----~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~c 160 (396)
..|..|-+. .++++--..-|....||..+++ ....+ ..+..-|.++-++.+..-|++.| .|. .++.
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~---~d~--~i~~ 112 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGS---WDG--TLRL 112 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEE---TTS--EEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEc---ccc--cceE
Confidence 345555443 2355555566888889866543 22234 34566788999987766666533 232 2222
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec---cCceEEEEEcCC
Q 016020 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPG 237 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs---~~~VqEIkiSpg 237 (396)
... ..+...........+........++..++..+.|+.+++||+......-... ...+..++++++
T Consensus 113 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 113 WDL----------TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EET----------TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred Eee----------cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 211 1112222222222222233333467778888899999999998876543332 278899999865
Q ss_pred e--EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc
Q 016020 238 I--MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE 312 (396)
Q Consensus 238 ~--~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~ 312 (396)
. .+++.... ...+++|++.+++.+..+. .|+.. +.|.+ .+.+|++...|+.+++||+.+.+.+.....+
T Consensus 183 ~~~~~~~s~~~--d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 183 SSNPIIVSCGW--DKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp SSSCEEEEEET--TSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred CCCcEEEEEcC--CCEEEEEECCCCceeeEec---CCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 3 33344433 4568999999999988776 56666 67777 7899999999999999999999998876655
Q ss_pred cCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccccc
Q 016020 313 FMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLL 354 (396)
Q Consensus 313 ~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l 354 (396)
..+.+..|.+++.++.+..+++|.+||+++ .++..+..+..
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 298 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 298 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred -ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccce
Confidence 467888899998888888889999999998 46666665443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-12 Score=114.12 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=163.1
Q ss_pred EecCCCCceEEEEeeecC---CCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeeccc-CCC---CeEEeeC
Q 016020 123 FLNVSPDEVIRSLFYNKN---NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESL-KWP---GFVEFDD 195 (396)
Q Consensus 123 ~lN~s~~evIrsifyN~~---n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l-~~P---gfVEFDd 195 (396)
.+-..+..-|.+|=++.. ++.+++++ .+++ .++..... .|+. ...+....- .+. --+.|.+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~--~~~~--~v~vw~~~-----~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFAT--VGSN--RVTLYECH-----SQGE---IRLLQSYVDADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEE--EETT--EEEEEEEC-----GGGC---EEEEEEEECSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEE--CCCC--EEEEEEcC-----CCcE---EEeeeeccccCCCCcEEEEEecc
Confidence 555667777888888853 56666633 2333 23333322 1110 001111100 011 1245555
Q ss_pred C---CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEee
Q 016020 196 V---NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (396)
Q Consensus 196 ~---NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~ 269 (396)
. +|+.++....|+.++|||+.+.+.+..+.+ ..|..++++| +-.+++.... ...++||++.+|+.+..+..+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK--DHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET--TSCEEEEETTTTEEEEEECST
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC--CCeEEEEEeecCeEEEEeccc
Confidence 2 278999999999999999999999999875 8899999998 5444455544 467999999999998887422
Q ss_pred cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccc----------------------------ccCCCce
Q 016020 270 LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----------------------------EFMTPSA 318 (396)
Q Consensus 270 L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t----------------------------~~~~PsA 318 (396)
-.+... +.|.+ .+++|++...|+.|++||+.+++....... +.....+
T Consensus 158 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 158 EGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred ccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 245555 77777 789999999999999999999876654333 7778888
Q ss_pred EEEeecCeEEEEEEc-CeEEEEeccc---------------ceeeeeccccccCC---CCCC--CcEEEccCCcEEEEec
Q 016020 319 FIFLYENQLFLTFRN-RTVAVWNFRG---------------ELVTSFEDHLLWHP---DCNT--NNIYITSDQDLIISYC 377 (396)
Q Consensus 319 FiFly~~qLFLTfs~-gti~iWd~~g---------------eL~t~fedh~l~~~---~c~~--n~~~it~~qd~ii~~~ 377 (396)
.-|. ++++++-+. |+|.+||.+. .++..++.|..... .+++ ++++++...|=.|.-.
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 8888 566666665 9999999876 23566666643322 2556 7888888777656555
Q ss_pred cCCCC
Q 016020 378 KAEPE 382 (396)
Q Consensus 378 ~~~~~ 382 (396)
.....
T Consensus 315 d~~~~ 319 (366)
T 3k26_A 315 DLEVE 319 (366)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-12 Score=119.07 Aligned_cols=261 Identities=11% Similarity=0.137 Sum_probs=177.6
Q ss_pred ceEEEeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhh
Q 016020 90 KVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (396)
Q Consensus 90 ~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~ 169 (396)
.|.-+-.-.+.+++-...|...+||..+++.+..+.... .-|.++-++ ++.|++.| .|. .++.-. +.
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~sg~---~dg--~i~vwd-----~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCLQYD--ERVIITGS---SDS--TVRVWD-----VN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEEECC--SSEEEEEE---TTS--CEEEEE-----SS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-CcEEEEEEC--CCEEEEEc---CCC--eEEEEE-----CC
Confidence 344444456777888889999999999999998887544 455667663 34444322 232 222222 12
Q ss_pred hCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE---EEecc--CceEEEEEcCCeEEEEEe
Q 016020 170 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSISD--KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 170 ~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l---ysIs~--~~VqEIkiSpg~~Ll~~q 244 (396)
.|+ .+.. .-.|.+-|--=..++..++..+.|+.++|||+.+.+.+ ..+.+ ..|..+.+.+..+ +...
T Consensus 202 ~~~-----~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~s~~ 273 (435)
T 1p22_A 202 TGE-----MLNT--LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI-VSAS 273 (435)
T ss_dssp SCC-----EEEE--ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEE-EEEE
T ss_pred CCc-----EEEE--EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEE-EEEe
Confidence 222 1111 11233333222224557888889999999999987744 33333 7889999955543 3332
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeec
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE 324 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~ 324 (396)
. +..++|||+.+|+.+..+. .+...+.-+...+++|++...|+.|++||+.+++++.+..+|...+.+..| +
T Consensus 274 -~--dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 274 -G--DRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp -T--TSEEEEEETTTCCEEEEEE---CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred -C--CCeEEEEECCcCcEEEEEc---CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 2 4678999999999999887 666665555557889999999999999999999999999999988888888 6
Q ss_pred CeEEEEEEc-CeEEEEeccc-c---------eeeeeccccccCCC-CCCCcEEEccCCcEEEEeccC
Q 016020 325 NQLFLTFRN-RTVAVWNFRG-E---------LVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 325 ~qLFLTfs~-gti~iWd~~g-e---------L~t~fedh~l~~~~-c~~n~~~it~~qd~ii~~~~~ 379 (396)
++++++-+. |+|.+||++. + .+..+..|.-.... +.+++.++|...|=-|...+.
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEEC
Confidence 667777665 9999999976 3 67778887665433 336667777776655544443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-12 Score=117.65 Aligned_cols=238 Identities=11% Similarity=0.150 Sum_probs=171.6
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
...|..+-.. ..++++-...|....||..+++.+..+.. +...|.++-++. +.+++.| .| ..++...
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~--~~l~~~~---~d--g~i~i~d--- 202 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSWNR--HVLSSGS---RS--GAIHHHD--- 202 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEEET--TEEEEEE---TT--SEEEEEE---
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEECC--CEEEEEc---CC--CCEEEEe---
Confidence 4567666665 34777777889999999999999998874 455566676653 4443322 22 2233222
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeE
Q 016020 166 EYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIM 239 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~ 239 (396)
++.+ +.++- ....|++ -+.|.+ +|+.++....|+.++|||+++.+.++.+.. ..|..+.++| |-.
T Consensus 203 --~~~~----~~~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 203 --VRIA----NHQIG--TLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp --TTSS----SCEEE--EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT
T ss_pred --cccC----cceee--EEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC
Confidence 2211 11111 0112333 467888 899999999999999999999999998865 7899999998 556
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeE--eecCCeeeEEEcccceEEEe--cccccCC
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAELMEV--SRTEFMT 315 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLI--KQed~~L~I~Dv~~~ki~~v--~~t~~~~ 315 (396)
+++.........+++||+.+|+.+..+.+. ..-..+.|.+ .+.+|++ +.+++.|+|||+.+++...+ ..+|...
T Consensus 274 ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~ 351 (401)
T 4aez_A 274 LLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351 (401)
T ss_dssp EEEEECCTTTCEEEEEETTTCCEEEEEECS-SCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred EEEEecCCCCCEEEEEECCCCCEEEEEeCC-CcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence 666655334678999999999999988621 1122377877 7888988 66999999999999877765 5688899
Q ss_pred CceEEEeecCeEEEEEEc-CeEEEEeccc-ceee
Q 016020 316 PSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVT 347 (396)
Q Consensus 316 PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t 347 (396)
+.+..|.++++++++.+. |+|.+||+.. +++.
T Consensus 352 v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 352 VLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp CCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999999999999888876 9999999986 5444
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=117.31 Aligned_cols=175 Identities=9% Similarity=0.117 Sum_probs=136.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.|.+ +|+.++..+.|+++||||+++.+.+..+.+ ..|..+.++|+-.+++.... +..++||++. |+.+..+.
T Consensus 71 ~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--D~~i~vwd~~-~~~~~~~~- 145 (319)
T 3frx_A 71 CTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR--DKTIKVWTIK-GQCLATLL- 145 (319)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET--TSCEEEEETT-SCEEEEEC-
T ss_pred EEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECC-CCeEEEEe-
Confidence 46776 788999999999999999999999888876 78999999988776677666 5679999995 55655543
Q ss_pred ecccCCc---cchhhh-----hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 269 LLHRNKK---VDFIEQ-----FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 269 ~L~~sk~---i~FiE~-----~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
.|... +.|.+. .+..|+....|+.+++||+.+.++.....+|.....+..|.+++++++|-+. |+|.+|
T Consensus 146 --~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223 (319)
T ss_dssp --CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred --ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 55544 455442 3447999999999999999999999988899999999999999999999886 999999
Q ss_pred eccc-ceeeeeccccc--cCCCCCCCcEEEccCCcE
Q 016020 340 NFRG-ELVTSFEDHLL--WHPDCNTNNIYITSDQDL 372 (396)
Q Consensus 340 d~~g-eL~t~fedh~l--~~~~c~~n~~~it~~qd~ 372 (396)
|+.. +.+..+..|.. -....|++..+.++..+=
T Consensus 224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE
T ss_pred ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 9987 56666654422 112256666666655443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-13 Score=122.62 Aligned_cols=239 Identities=10% Similarity=0.062 Sum_probs=162.5
Q ss_pred ccccccccceEEEeec-cchhhhhhccccceeeeccccceEEEe---cCCCCceEEEEeeecCCCeEEEEEeEecCCCce
Q 016020 82 LPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFL---NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (396)
Q Consensus 82 ~~~l~~RS~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~l---N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~ 157 (396)
.....-...|..+.+. ++-+++-...|....||..+++.+... -..+...|.+|-++.+...|++.| .|. .
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs---~dg--~ 162 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG---KDF--S 162 (357)
T ss_dssp SEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE---TTS--C
T ss_pred cccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe---CCC--e
Confidence 3334455667777665 344555567788899999888766533 235677899999998877776644 222 2
Q ss_pred eeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceE
Q 016020 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQ 230 (396)
Q Consensus 158 L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~Vq 230 (396)
++. - +++.|+ ++..- -.|.+ -+.|.+.+..+++..+.|+.++|||+++.+.+..+.. ..+.
T Consensus 163 v~i--w---d~~~~~-----~~~~~--~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 230 (357)
T 4g56_B 163 VKV--W---DLSQKA-----VLKSY--NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT 230 (357)
T ss_dssp EEE--E---ETTTTE-----EEEEE--CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE
T ss_pred EEE--E---ECCCCc-----EEEEE--cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccccc
Confidence 222 2 222222 11110 01222 3678776666888888999999999999987665542 5689
Q ss_pred EEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEE
Q 016020 231 EIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (396)
Q Consensus 231 EIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~ 306 (396)
.+.++|. -.+++.... ...++|||+.+|+.+..+. .+... +.|.+..+.+|+...+|+.|+|||+.+++++
T Consensus 231 ~v~~sp~~~~~la~g~~--d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDE--TGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp EEEECTTSTTEEEEEES--SSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred chhhhhcccceEEEeec--ccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 9999974 344444433 4568999999999998876 45555 7787744456778999999999999999999
Q ss_pred EecccccCCCceEEEee-cCeEEEEEEc-CeEEEEeccc
Q 016020 307 EVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 307 ~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~g 343 (396)
... +|...+.+.-|.| ++++++|-+. |+|.+||+..
T Consensus 306 ~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 306 RDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 875 6888999999997 7889999886 9999999865
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=115.46 Aligned_cols=236 Identities=8% Similarity=0.062 Sum_probs=164.8
Q ss_pred ceEEEeec--cchhhhhhccccceeeeccccc----eEEEecCCCCceEEEEeeecCCC-eEEEEEeEecCCCceeeeEe
Q 016020 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNR----RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRS 162 (396)
Q Consensus 90 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~----~ic~lN~s~~evIrsifyN~~n~-slI~vSv~~sd~~s~L~cr~ 162 (396)
.|..+-.. ..++++-...|....|+..+++ ..... ....-|.++-++.+.. .|++.+ .|. .++.-.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~~wd 85 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT---VQG--EILKVD 85 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE---TTS--CEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEc---CCC--eEEEEE
Confidence 34444433 3456666778999999998888 55554 5667889999987766 555533 222 222221
Q ss_pred eehhhh-hhCCCCCCCcceeecccC--CCC---eEEeeCCCCcEEEeecCCCeEEEEeccC---------ceEEEEecc-
Q 016020 163 TKIEYI-RRGKPDSGFALFESESLK--WPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSISD- 226 (396)
Q Consensus 163 ~~~~~i-~~gk~~~~~~LF~~~~l~--~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlkn---------Ys~lysIs~- 226 (396)
+ ..++. ...-. |.+ -+.|++ +..++..+.|+.+++||+++ .+.+..+..
T Consensus 86 -----~~~~~~~--------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 86 -----LIGSPSF--------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp -----SSSSSSE--------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred -----eccCCce--------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 2 12211 11111 333 467888 77888888999999999998 665655554
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN 302 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~ 302 (396)
..|..+.++|+. +++. .. .-.+++|++.+ ++....... .++... +.|.+..+++|++...++.++|||+.+
T Consensus 151 ~~v~~~~~~~~~-l~~~-~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 151 NKIFTMDTNSSR-LIVG-MN--NSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp CCEEEEEECSSE-EEEE-ES--TTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred CceEEEEecCCc-EEEE-eC--CCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 789999999998 3333 22 35689999999 775433221 133333 677765689999999999999999988
Q ss_pred c------eEEEecccccC---------CCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 303 A------ELMEVSRTEFM---------TPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 303 ~------ki~~v~~t~~~---------~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
+ +...+...+.. .+.+.-|.++++++++-+. |+|.+||.+. +++..+..|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 7 66666666654 8889999999998888876 8999999985 788888887
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=115.06 Aligned_cols=217 Identities=11% Similarity=0.145 Sum_probs=150.9
Q ss_pred cccceeeeccccceEEEecCCCCceEEEEeeecCC---CeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeec
Q 016020 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNN---DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n---~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~ 183 (396)
.|....||..+++........+..-|.++-++..+ .-|++.+ .|. .++.- ++..++ .++..
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg--~i~iw-----d~~~~~----~~~~~-- 106 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD---FGG--NLHIW-----NLEAPE----MPVYS-- 106 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE---TTS--CEEEE-----CTTSCS----SCSEE--
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec---CCC--eEEEE-----eCCCCC----ccEEE--
Confidence 68999999999998877766677788899888763 4444422 232 22222 222222 01111
Q ss_pred ccCCCCeE---------EeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc------CceEEEE----EcCCeEEEEE
Q 016020 184 SLKWPGFV---------EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD------KHVQEIK----ISPGIMLLIF 243 (396)
Q Consensus 184 ~l~~PgfV---------EFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~------~~VqEIk----iSpg~~Ll~~ 243 (396)
.-.|.+-| .|++ +|+.++..+.|+.++|||+++.+ .+..+.. ..+..+. ++|+-.+++.
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 185 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred EEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence 01233332 2344 78889999999999999999987 6666643 3788888 5655555555
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhh--hcceeeEeecCCeeeEEEcccceEEEecc-----cccCCC
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAELMEVSR-----TEFMTP 316 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~--~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-----t~~~~P 316 (396)
... ...+++||+++++......+. ..-..+.|.+. .+++|++...|+.+++||+.+++...... ++...+
T Consensus 186 ~~~--d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v 262 (357)
T 3i2n_A 186 GYD--NGDIKLFDLRNMALRWETNIK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV 262 (357)
T ss_dssp EET--TSEEEEEETTTTEEEEEEECS-SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred Ecc--CCeEEEEECccCceeeecCCC-CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence 544 457899999999986654421 11122777775 78999999999999999999987655444 888899
Q ss_pred ceEEEeecCe-EEEEEEc-CeEEEEeccc
Q 016020 317 SAFIFLYENQ-LFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 317 sAFiFly~~q-LFLTfs~-gti~iWd~~g 343 (396)
.+..|.++++ ++++-+. |+|.+||++.
T Consensus 263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 263 WQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 9999999988 7888776 9999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=126.81 Aligned_cols=177 Identities=14% Similarity=0.204 Sum_probs=135.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
+.|.+ +|+.|+..+.|+.++|||+++.+.+..+.+ ..|..++++|+- .+++.... +..++|||+++|+.+..+.
T Consensus 145 v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~--dg~v~~wd~~~~~~~~~~~ 221 (357)
T 4g56_B 145 LSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE--DGRILLWDTRKPKPATRID 221 (357)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET--TSCEEECCTTSSSCBCBCC
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc--CCceEEEECCCCceeeeee
Confidence 57887 899999999999999999999999999876 789999999753 33444443 4568999999999887655
Q ss_pred eecccC--CccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEc-CeEEEEeccc
Q 016020 268 HLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 268 ~~L~~s--k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~g 343 (396)
..-+.. ..+.|.+..+..|++..+|+.|++||+.++++..+...+.....+.-|.+++ ++++|-+. |+|.|||.+.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 321221 1278888566778889999999999999999999999999999999999987 46667775 9999999997
Q ss_pred -ceeeeeccccccCCC---CC-CCcEEEccCCc
Q 016020 344 -ELVTSFEDHLLWHPD---CN-TNNIYITSDQD 371 (396)
Q Consensus 344 -eL~t~fedh~l~~~~---c~-~n~~~it~~qd 371 (396)
+++..+ .|--++.. .| ++++++|...|
T Consensus 302 ~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 302 SEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp CEEEEEC-CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 566554 45433221 33 56666665544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-12 Score=117.23 Aligned_cols=184 Identities=14% Similarity=0.194 Sum_probs=141.3
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc--CCeEEEEEecCCCeeeeEEEEeecCcEEEE--
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDGTVLKV-- 265 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS--pg~~Ll~~q~~~~~iplkIl~IetG~~l~s-- 265 (396)
.|.+ ++ .++..+.|+.++|||+++.+.+..+.+ ..|..+.++ ++-.+++.... +..+++|++.+++....
T Consensus 169 ~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 169 KYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR--DNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp EECS-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET--TSCEEEEECCCCCCC----
T ss_pred EEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC--CCcEEEeeCCCCccccccc
Confidence 4544 34 677778899999999999999999875 889999998 34344455544 46789999999886543
Q ss_pred ------------------EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE
Q 016020 266 ------------------FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (396)
Q Consensus 266 ------------------~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL 327 (396)
...+..+...+.-+...+.+|++...|+.|++||+.+++.+....+|...+.+..|.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE
Confidence 22233555666656678899999999999999999999999999999999999999999998
Q ss_pred EEEEEc-CeEEEEecc-cceeeeeccccccCCC-CCCCcEEEccCCcEEEEeccC
Q 016020 328 FLTFRN-RTVAVWNFR-GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 328 FLTfs~-gti~iWd~~-geL~t~fedh~l~~~~-c~~n~~~it~~qd~ii~~~~~ 379 (396)
+++-+. |+|.+||++ |+++..++.|..+... +.+++.++|...|=.|.....
T Consensus 325 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 888887 999999996 5888899888655432 344667777666644444433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=125.19 Aligned_cols=183 Identities=12% Similarity=0.136 Sum_probs=141.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE----
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK---- 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~---- 264 (396)
+.|.+ +|+.|+..+.|+.+||||+.+.+.+..+.. ..|.++.++|+-.+++.... +..++||++.++....
T Consensus 72 ~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~--d~~v~iw~~~~~~~~~~~~~ 148 (380)
T 3iz6_a 72 LDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL--DSACSIFNLSSQADRDGNMP 148 (380)
T ss_dssp EEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS--SSCCEEEECCCCSSCCCSST
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC--CCcEEEEECCCCccccCCcc
Confidence 56777 788899999999999999999999888876 77999999998888787776 6778999998753211
Q ss_pred EEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec-----ccccCCCceEEEee-cCeEEEEEEc-C
Q 016020 265 VFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-----RTEFMTPSAFIFLY-ENQLFLTFRN-R 334 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-----~t~~~~PsAFiFly-~~qLFLTfs~-g 334 (396)
....+-+|+.. +.|.+..+..|+....|+.+++||+.+++.+.+. ..|.....+.-|.+ ++++|+|-+. |
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~ 228 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS
T ss_pred ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC
Confidence 01112244444 6788766778999999999999999999988765 55666777777765 7888888886 9
Q ss_pred eEEEEecc-c-ceeeeeccccccCCC---CCCCcEEEccCCcEEEEe
Q 016020 335 TVAVWNFR-G-ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISY 376 (396)
Q Consensus 335 ti~iWd~~-g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~ 376 (396)
+|.+||++ + +.+..+..|.-+... .|+++.++|+..|=-|--
T Consensus 229 ~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 99999997 3 677788888655433 678888888877744433
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-12 Score=113.20 Aligned_cols=186 Identities=16% Similarity=0.231 Sum_probs=135.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEecc--CceEEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlk--nYs~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+.|++ +|+.++....|+.++|||+. +.+.+..+.+ ..|..+++++. -.+|+.... +..++||++++|+...
T Consensus 17 ~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 17 AVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQ 93 (379)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TSCEEEEEEETTEEEE
T ss_pred EEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCCceeE
Confidence 56777 78889989999999999999 7778888875 78999999854 333344444 4678999999998333
Q ss_pred EEEeecccCCc---cchhhhh-cceeeEeecCCeeeEEEcccce--EEEecccccCCCceEEEee-------------cC
Q 016020 265 VFYHLLHRNKK---VDFIEQF-NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-------------EN 325 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~-~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~~~~PsAFiFly-------------~~ 325 (396)
...+. .+... +.|.+.. +.+|++...|+.|++||+.+++ .......+.....+..|.+ ++
T Consensus 94 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 94 IAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 22221 34444 7777733 7899999999999999999973 3335567888889999999 58
Q ss_pred eEEEEEEc-CeEEEEeccc-c----eeeeeccccccCCC---CCC---CcEEEccCCcEEEEeccCC
Q 016020 326 QLFLTFRN-RTVAVWNFRG-E----LVTSFEDHLLWHPD---CNT---NNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 326 qLFLTfs~-gti~iWd~~g-e----L~t~fedh~l~~~~---c~~---n~~~it~~qd~ii~~~~~~ 380 (396)
+++++-+. |+|.+||++. + ++..+..|..+... .|+ +++++|...|=.|......
T Consensus 173 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 88888775 9999999985 2 55677777543221 566 7888888777544444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-11 Score=121.86 Aligned_cols=233 Identities=13% Similarity=0.162 Sum_probs=174.3
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
...+++-...|....||..+|+.+..+.. +..-|+++-++.....|++.|. |. ..+.-. +.. +.
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---dg----~i~vw~---~~~-----~~ 88 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSD---DF----RIRVFN---YNT-----GE 88 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEET---TS----EEEEEE---TTT-----CC
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeC---CC----eEEEEE---CCC-----Cc
Confidence 34566667789999999999999998874 5566888999987777776442 22 222222 222 22
Q ss_pred cceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCc-eEEEEecc--CceEEEEEcC-CeEEEEEecCCCee
Q 016020 178 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHV 250 (396)
Q Consensus 178 ~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknY-s~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~i 250 (396)
.+..- -.|++ -+.|.+ +|+.++..+.|+.++|||+.+. .....+.+ ..|..+.++| +-.+++.... ..
T Consensus 89 ~~~~~--~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg 163 (814)
T 3mkq_A 89 KVVDF--EAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DR 163 (814)
T ss_dssp EEEEE--ECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET--TS
T ss_pred EEEEE--ecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC--CC
Confidence 22221 12444 467887 7888888889999999999987 66666654 7799999998 5545555554 45
Q ss_pred eeEEEEeecCcEEEEEEeecccCCc---cchhhh-hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe
Q 016020 251 PLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q 326 (396)
.+++|++.+|+....+.. ++... +.|.+. .+.+|++...|+.|++||+.+++.......+...+.+..|.++++
T Consensus 164 ~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp EEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred eEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 789999999998887662 33344 555542 678999999999999999999999999899999999999999999
Q ss_pred EEEEEEc-CeEEEEeccc-ceeeeecccc
Q 016020 327 LFLTFRN-RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~g-eL~t~fedh~ 353 (396)
++++-+. |+|.+||.+. +++..+..|.
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 9998886 9999999986 6777776663
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-11 Score=110.83 Aligned_cols=250 Identities=11% Similarity=0.089 Sum_probs=168.9
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 180 (396)
+++-...|...+||..+++.+..+.... -++++-++.....|.+.+ ..|. . .+..+ +..|+ .+-
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~--~~d~--~--i~v~d---~~~~~-----~~~ 68 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVAN--AHSN--D--VSIID---TATNN-----VIA 68 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEE--GGGT--E--EEEEE---TTTTE-----EEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEEC--CCCC--e--EEEEE---CCCCe-----EEE
Confidence 3444567888999999999988887543 378899987766654422 1222 2 22222 22222 121
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEee
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Ie 258 (396)
.-..-..|--+.|++.+..+++....++.+++||+.+.+.+..+.. ..+..+.++|+- .|++.... .-.+.+||+.
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~ 146 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG--DKTVSVINTV 146 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT--TTEEEEEETT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCC--CCEEEEEECC
Confidence 1111125667889984444656677789999999999998888876 789999999764 44455544 3578999999
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceee-EeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE----c
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----N 333 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLL-IKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs----~ 333 (396)
+|+.+..+..- ..-..+.|.+ .+.+|+ ....++.|.+||+.++++...... ...|.+..|.++++.+++.+ +
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 147 TKAVINTVSVG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp TTEEEEEEECC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred CCcEEEEEecC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCC
Confidence 99998877631 1112377777 777885 556788999999999998876654 45788899999987655554 5
Q ss_pred CeEEEEeccc-ceeeeeccccccC--CCCCCCc-EEEccCCc
Q 016020 334 RTVAVWNFRG-ELVTSFEDHLLWH--PDCNTNN-IYITSDQD 371 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~l~~--~~c~~n~-~~it~~qd 371 (396)
+.|.+||.+. +.+..++.|.-.. ...++++ +|++...|
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred CcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC
Confidence 9999999986 6777776653221 1145554 55664433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-12 Score=119.27 Aligned_cols=187 Identities=16% Similarity=0.227 Sum_probs=136.6
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCc-------eEEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeec
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknY-------s~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Iet 259 (396)
-+.|++.+|..++..+.|+.++|||+.+. +.+..+.+ ..|..+.++|+- .+|+.... +..++|||+++
T Consensus 86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~ 163 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC--DNVILVWDVGT 163 (402)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET--TSCEEEEETTT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC--CCEEEEEECCC
Confidence 46788778999999999999999999998 45566654 889999999986 45555555 45689999999
Q ss_pred CcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec-ccccCC-CceEEEeecCeEEEEE---
Q 016020 260 GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RTEFMT-PSAFIFLYENQLFLTF--- 331 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~-~t~~~~-PsAFiFly~~qLFLTf--- 331 (396)
|+.+..+.. ..+... +.|.+ .+.+|++...|+.|+|||+++++..... ..+... +....|.++++++++-
T Consensus 164 ~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 164 GAAVLTLGP-DVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp TEEEEEECT-TTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred CCccEEEec-CCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC
Confidence 999887721 134444 77887 8899999999999999999999988876 566555 8999999999988886
Q ss_pred -EcCeEEEEeccc-ce-eeeec-cccccCCC---CCCCc-EEEccCCcEEEEeccCC
Q 016020 332 -RNRTVAVWNFRG-EL-VTSFE-DHLLWHPD---CNTNN-IYITSDQDLIISYCKAE 380 (396)
Q Consensus 332 -s~gti~iWd~~g-eL-~t~fe-dh~l~~~~---c~~n~-~~it~~qd~ii~~~~~~ 380 (396)
.+|+|.+||++. +. +...+ +|...... .++++ ++++...|=-|......
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 569999999987 32 32222 23222111 34444 44565555444444443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-11 Score=114.52 Aligned_cols=250 Identities=13% Similarity=0.171 Sum_probs=170.5
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
.+.++.-...|.-.+||..+++.+..+.. +..-|.++-++ ++.+++.| .|. .++.-.+ ..|+
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~~---~dg--~i~vwd~-----~~~~----- 190 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGS---TDR--TLKVWNA-----ETGE----- 190 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEE---TTS--CEEEEET-----TTTE-----
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CCEEEEEe---CCC--eEEEEEC-----CcCc-----
Confidence 56677778889999999999999998875 44556777776 34444422 232 2222221 1111
Q ss_pred cceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 178 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 178 ~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
++.. .-.|.+ -+.|+ +..++..+.|+.+++||+.+.+.+..+.+ ..|..+.+.+. .++.... ...+
T Consensus 191 ~~~~--~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~---dg~i 261 (445)
T 2ovr_B 191 CIHT--LYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAY---DFMV 261 (445)
T ss_dssp EEEE--ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEET---TSCE
T ss_pred EEEE--ECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCC-EEEEEcC---CCEE
Confidence 1111 012333 23454 56688888999999999999999988875 78999999544 4433333 3578
Q ss_pred EEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
++||+.+|+.+..+. .+...+.-+...+.+|++...|+.|++||+.+++++.....+...+.++-+ +++++++-+
T Consensus 262 ~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 336 (445)
T 2ovr_B 262 KVWDPETETCLHTLQ---GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGN 336 (445)
T ss_dssp EEEEGGGTEEEEEEC---CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEE
T ss_pred EEEECCCCcEeEEec---CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEe
Confidence 999999999998887 555654434448899999999999999999999999988888887777665 455666666
Q ss_pred -cCeEEEEeccc-ceeeeecc---ccccCC-CCCCCcEEEccCCcEEEEeccC
Q 016020 333 -NRTVAVWNFRG-ELVTSFED---HLLWHP-DCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 333 -~gti~iWd~~g-eL~t~fed---h~l~~~-~c~~n~~~it~~qd~ii~~~~~ 379 (396)
+|+|.+||++. +.+..+.. |..... -+.++++++|+..|=-|.-...
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEEC
Confidence 59999999965 77777776 322211 1234566666666644444443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-12 Score=113.08 Aligned_cols=247 Identities=12% Similarity=0.115 Sum_probs=160.4
Q ss_pred ceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCC-
Q 016020 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN- 197 (396)
Q Consensus 119 ~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~N- 197 (396)
+.+..+..++..-|.++=++..+..+++++...+.+ ..++.-.+ ..|+. .++.....-..---+.|.+.+
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d-~~v~iw~~-----~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT-GVIQLYEI-----QHGDL---KLLREIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC-EEEEEEEE-----CSSSE---EEEEEEEESSCEEEEECTTCCT
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC-cEEEEEeC-----CCCcc---cceeeecccCcEEEEEEcCCCC
Confidence 344455556777888888888777777644322112 23333322 12211 111111111122356787754
Q ss_pred -CcEEEeecCCCeEEEEeccCce-EEEEecc--CceEEEEE------cCCeEEEEEecCCCeeeeEEEEeecCc-EEEEE
Q 016020 198 -GKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KHVQEIKI------SPGIMLLIFNRSSSHVPLKILSIEDGT-VLKVF 266 (396)
Q Consensus 198 -gkIlt~~a~d~~YrVwdlknYs-~lysIs~--~~VqEIki------Spg~~Ll~~q~~~~~iplkIl~IetG~-~l~s~ 266 (396)
|..++....|+.+++||+.+.+ .+..+.+ ..|..+.+ +|+--+++.... ...++||++.+++ .+..+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR--DGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET--TSCEEEECTTSCSSCSEEE
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC--CCeEEEEeCCCCCCcceec
Confidence 8999999999999999999988 7777765 78999965 444444455544 4678999999998 66666
Q ss_pred Eeeccc-CCc---cc----hhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEee---cCeEEEEEEc-C
Q 016020 267 YHLLHR-NKK---VD----FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---ENQLFLTFRN-R 334 (396)
Q Consensus 267 ~~~L~~-sk~---i~----FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly---~~qLFLTfs~-g 334 (396)
...-.+ ... +. |.+ .+.+|++..+|+.|++||+.++++... ..+...+.+..|.+ +++++++-+. |
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred cccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 521111 112 33 334 889999999999999999999998654 56678899999998 7888777775 9
Q ss_pred eEEEEeccc-ceeeeec-----cccccCC---CCCCCc-EEEccCCcEEEEecc
Q 016020 335 TVAVWNFRG-ELVTSFE-----DHLLWHP---DCNTNN-IYITSDQDLIISYCK 378 (396)
Q Consensus 335 ti~iWd~~g-eL~t~fe-----dh~l~~~---~c~~n~-~~it~~qd~ii~~~~ 378 (396)
+|.+||++. +.+..+. .|.-... .++++. +++|...|=.|.-..
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 999999987 4444443 5533322 256676 788877774444443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=111.37 Aligned_cols=258 Identities=13% Similarity=0.155 Sum_probs=169.4
Q ss_pred ceEEEeecc---chhhhhhccccceeeeccccceEEEecC-CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 90 KVIEIVAAR---DIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 90 ~V~EIv~a~---dii~~L~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
+|.-+.... .+++.-...|....||..+++..+.+.. .+..-|.++=++..+..++.++ ..|. .++.- .+
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~--~i~iw--d~ 148 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS--SIRG--ATTLR--DF 148 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE--ETTT--EEEEE--ET
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE--eCCC--EEEEE--EC
Confidence 344444442 3667777789999999999999998874 6778899999987554555422 2332 22222 22
Q ss_pred hhhhhCCCCCCCcceeec--ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeE-E
Q 016020 166 EYIRRGKPDSGFALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM-L 240 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~--~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~-L 240 (396)
+ ++ ....+... .-.+.--+.|.+ +|+.++....|+.+++||+ +.+.+..+.+ ..|..+.++|+-- +
T Consensus 149 ~----~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 149 S----GS---VIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp T----SC---EEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred C----CC---ceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 1 11 00111110 012234677887 8899999999999999999 5777888775 7899999998865 5
Q ss_pred EEEecCCCeeeeEEEEeec----CcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 241 LIFNRSSSHVPLKILSIED----GTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 241 l~~q~~~~~iplkIl~Iet----G~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
++.... +-.++|||+.+ ++.+..+. +... +.|.+..+.+|++...|+.|++||+.+++.......+.
T Consensus 220 l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 220 MATSSV--DATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEEEET--TSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred EEEEeC--CCEEEEEeCCCCCcccceEEEec----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 555555 45789999999 66666554 3344 78887788999999999999999999977654433221
Q ss_pred -------CCCceEEEeecCeEE-EEE---------EcCeEEEEeccc-ceeeeecccc--ccC---CCCCCCcEEEccC
Q 016020 314 -------MTPSAFIFLYENQLF-LTF---------RNRTVAVWNFRG-ELVTSFEDHL--LWH---PDCNTNNIYITSD 369 (396)
Q Consensus 314 -------~~PsAFiFly~~qLF-LTf---------s~gti~iWd~~g-eL~t~fedh~--l~~---~~c~~n~~~it~~ 369 (396)
.... ..|.+++.+. +++ .+|+|.+||+.. +++..+..|. ... ...+++++++|+.
T Consensus 294 ~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 294 HRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp BCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred ccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 2222 2444444433 333 359999999864 7888887643 111 1245555555554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=106.73 Aligned_cols=229 Identities=12% Similarity=0.140 Sum_probs=153.5
Q ss_pred hccccceeeeccccceEEEecC-CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeee--------------hh---
Q 016020 105 AHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK--------------IE--- 166 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~--------------~~--- 166 (396)
+--|....||..||+.+..+.. .+...|.+|-++...+.|++.| .|. .++.-.+. +.
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs---~Dg--~v~iw~~~~~~~~~~~~~h~~~~~~~~ 116 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---SSA--EVQLWDVQQQKRLRNMTSHSARVGSLS 116 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---TTS--EEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE---CCC--cEEEeecCCceeEEEecCccceEEEee
Confidence 4467789999999998887764 4667899999998888777644 121 11111110 00
Q ss_pred ----hhhhCCC---------CCCCcceeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCceE----EEEe--
Q 016020 167 ----YIRRGKP---------DSGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSI-- 224 (396)
Q Consensus 167 ----~i~~gk~---------~~~~~LF~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~----lysI-- 224 (396)
.+--|-. ..+...- .....|.+ .+.|.. +|+.++....|+.++|||+++.+. +...
T Consensus 117 ~~~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 117 WNSYILSSGSRSGHIHHHDVRVAEHHV-ATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp EETTEEEEEETTSEEEEEETTSSSCEE-EEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred cCCCEEEEEecCCceEeeecCCCceeE-EEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 0000000 0000000 01111222 334444 788999999999999999988652 2222
Q ss_pred ccCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee--cCCeeeEEEcc
Q 016020 225 SDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVR 301 (396)
Q Consensus 225 s~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~ 301 (396)
....|..+.++|. -.++..........++||+.++++......+. ..-..+.|.. .+.++++.. .|+.|+|||+.
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS-SCEEEEEEET-TTTEEEEEECTTTCCEEEEETT
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce-eeeeeeeecc-cccceEEEEEcCCCEEEEEECC
Confidence 2367888888853 23333344445678899999999988776521 2222367777 566666654 89999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
+++++.+..+|.....+.-|.+++++++|-+. |+|+|||+.
T Consensus 273 ~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 273 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999999999999999999999999999987 999999974
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-12 Score=119.50 Aligned_cols=169 Identities=12% Similarity=0.242 Sum_probs=134.9
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+|..++..+.|+.++|||+++.+.+.++.+ ..|..+.++++.++ .... ...+++|++.+++.......+..+..
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~--s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMV--TCSK--DRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEE--EEET--TSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEE--EeeC--CCcEEEEeCCCCCCceeeeEecCCCC
Confidence 578999999999999999999999998876 88999999988443 3333 46789999999998865555557777
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
.+.-+...+++|++...|+.|++||+.+++++....++...+.+..| +++++++-+. |+|.+||++. +.+..++.|
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence 75555558899999999999999999999999998899888888777 4566666664 9999999984 788889888
Q ss_pred cccCCC-CCCCcEEEccCCc
Q 016020 353 LLWHPD-CNTNNIYITSDQD 371 (396)
Q Consensus 353 ~l~~~~-c~~n~~~it~~qd 371 (396)
...... +.+++.++|+..|
T Consensus 336 ~~~v~~~~~~~~~l~sg~~d 355 (435)
T 1p22_A 336 EELVRCIRFDNKRIVSGAYD 355 (435)
T ss_dssp SSCEEEEECCSSEEEEEETT
T ss_pred cCcEEEEEecCCEEEEEeCC
Confidence 654322 3366666666555
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-12 Score=115.01 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=136.1
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec----cCceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs----~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
+.|++.+.+.++..+.|+.++|||+.+.+....+. ...|..++++| +-.+++.... ...++||++++ +.+..
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~-~~~~~ 155 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI--RGATTLRDFSG-SVIQV 155 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET--TTEEEEEETTS-CEEEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC--CCEEEEEECCC-CceEE
Confidence 57787333899999999999999999888777764 38899999999 5555566655 46789999995 55555
Q ss_pred EEeecccCC---ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEEc-CeEEEEe
Q 016020 266 FYHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAVWN 340 (396)
Q Consensus 266 ~~~~L~~sk---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~iWd 340 (396)
+...-.+.. .+.|.+ .+.+|++..+|+.+++||+ +++.+.....|...+.+..|.++++ ++++-+. |+|.+||
T Consensus 156 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 156 FAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp EECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence 542212222 277777 7899999999999999999 6777778888999999999999998 8888776 8999999
Q ss_pred ccc-----ceeeeeccccccC---CCCC-CCcEEEccCCcEEEEec
Q 016020 341 FRG-----ELVTSFEDHLLWH---PDCN-TNNIYITSDQDLIISYC 377 (396)
Q Consensus 341 ~~g-----eL~t~fedh~l~~---~~c~-~n~~~it~~qd~ii~~~ 377 (396)
++. +++..+ .|.-+. ..++ +++.+++...|=-|.-.
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iw 278 (383)
T 3ei3_B 234 LRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278 (383)
T ss_dssp GGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEE
T ss_pred CCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEE
Confidence 984 466655 343322 1256 77777777766444433
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-12 Score=113.96 Aligned_cols=267 Identities=13% Similarity=0.107 Sum_probs=154.6
Q ss_pred ccceEEEeecc---chhhhhhccccceeeeccccceEEEec------------CCCCceEEEEeeecCCCeEEEEEeEec
Q 016020 88 RTKVIEIVAAR---DIVFALAHSGVCAAFSRETNRRICFLN------------VSPDEVIRSLFYNKNNDSLITVSVYAS 152 (396)
Q Consensus 88 RS~V~EIv~a~---dii~~L~~sG~c~af~~~t~~~ic~lN------------~s~~evIrsifyN~~n~slI~vSv~~s 152 (396)
+.+|..+.... .+++.-...|....||..+++....+. ..+..-|.++-++..+..++.++ ..
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~ 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS--SF 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE--ET
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE--eC
Confidence 45566665543 677777788999999999887766554 24677788888887455444421 22
Q ss_pred CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCC--CCcEEEeecCCCeEEEEeccCceEEEEecc--Cc
Q 016020 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KH 228 (396)
Q Consensus 153 d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~--NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~ 228 (396)
|. .++.-.+ ..| .++..-..-....-+.|.+. ++..++....|+.+++||+++.+.+..+.. ..
T Consensus 121 d~--~i~iwd~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 121 DK--TLKVWDT-----NTL-----QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp TS--EEEEEET-----TTT-----EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC
T ss_pred CC--eEEEeeC-----CCC-----ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc
Confidence 22 2333322 121 11111111111223444443 566899999999999999999998888875 78
Q ss_pred eEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCc-EEEEEEe------------ecccCCc---cchhhhhcceeeEeec
Q 016020 229 VQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGT-VLKVFYH------------LLHRNKK---VDFIEQFNEKLLVKQE 291 (396)
Q Consensus 229 VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~-~l~s~~~------------~L~~sk~---i~FiE~~~ekLLIKQe 291 (396)
|..+.++|+-- +++.... ...++|||+.+++ .+..+.. ...+... +.|.+ .+++|++...
T Consensus 189 v~~~~~~~~~~~ll~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 265 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASA--DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGT 265 (408)
T ss_dssp EEEEEECSSCTTEEEEEET--TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEET
T ss_pred EEEEEECCCCCcEEEEEcC--CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecC
Confidence 99999998753 4444444 4568999998887 3333310 0122233 67777 7888999988
Q ss_pred CCeeeEEEcccceEEEecccc--c--CCCceEE--EeecCeEEEEEEcCeEEEEeccc-ceeeeeccccccCCC---CCC
Q 016020 292 NENLQILDVRNAELMEVSRTE--F--MTPSAFI--FLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHPD---CNT 361 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~--~--~~PsAFi--Fly~~qLFLTfs~gti~iWd~~g-eL~t~fedh~l~~~~---c~~ 361 (396)
|+.|++||+.+++...+...+ . ..+..+. ....+.+.++-.++.|.+||+.. +++..+..|.-.... .++
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 999999998876654322111 0 0011111 11233334444445555555544 555555555332211 344
Q ss_pred CcEEEccCCc
Q 016020 362 NNIYITSDQD 371 (396)
Q Consensus 362 n~~~it~~qd 371 (396)
+++++|...|
T Consensus 346 ~~~l~s~~~d 355 (408)
T 4a11_B 346 FQELYSGSRD 355 (408)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEECCC
Confidence 5555555444
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-12 Score=113.32 Aligned_cols=174 Identities=17% Similarity=0.292 Sum_probs=129.4
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC--ceEEEEecc--CceEEEEEcC---CeEEEEEecCCCeeeeEEEEeecCc--
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT-- 261 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn--Ys~lysIs~--~~VqEIkiSp---g~~Ll~~q~~~~~iplkIl~IetG~-- 261 (396)
+.|++ +|+.|+..+.|+++||||+.+ .+.+..+.+ ..|..+.+++ |-+| +.... +..++||++++|+
T Consensus 15 ~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l-~s~s~--D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 15 AVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL-ASCSY--DGKVMIWKEENGRWS 90 (297)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEE-EEEET--TTEEEEEEBSSSCBC
T ss_pred EEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEE-EEEcC--CCEEEEEEcCCCceE
Confidence 46887 799999999999999999975 467778775 7899999985 5554 44444 5778999999985
Q ss_pred EEEEEEeecccCCc---cchhhh-hcceeeEeecCCeeeEEEcccceE--EEecccccCCCceEEEeec-----------
Q 016020 262 VLKVFYHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYE----------- 324 (396)
Q Consensus 262 ~l~s~~~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki--~~v~~t~~~~PsAFiFly~----------- 324 (396)
.+..+. .|+.. +.|.+. .+.+|++...|+.+++||+.+++. ..+..+|.....+.-|.++
T Consensus 91 ~~~~~~---~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 167 (297)
T 2pm7_B 91 QIAVHA---VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (297)
T ss_dssp CCEEEC---CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred EEEEee---cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence 333333 34444 777774 378999999999999999998632 3455677777888888876
Q ss_pred --CeEEEEEEc-CeEEEEeccc-c----eeeeeccccccCCC---CCC---CcEEEccCCc
Q 016020 325 --NQLFLTFRN-RTVAVWNFRG-E----LVTSFEDHLLWHPD---CNT---NNIYITSDQD 371 (396)
Q Consensus 325 --~qLFLTfs~-gti~iWd~~g-e----L~t~fedh~l~~~~---c~~---n~~~it~~qd 371 (396)
+++++|-+. |+|++||++. + +...++.|--++.. .|+ +++++|...|
T Consensus 168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 467887775 8999999986 3 66788888654322 344 4777777666
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-11 Score=107.96 Aligned_cols=246 Identities=8% Similarity=0.045 Sum_probs=166.0
Q ss_pred ccceEEEeecc-----chhhhhhccccceeeeccc-cceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeE
Q 016020 88 RTKVIEIVAAR-----DIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (396)
Q Consensus 88 RS~V~EIv~a~-----dii~~L~~sG~c~af~~~t-~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr 161 (396)
...|.-+-... .++++-...|....||..+ ++.+...-..+..-|.++-++.+.+.|++.| .|. .++.-
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg--~v~iw 113 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS---CDK--TAKMW 113 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc---CCC--cEEEE
Confidence 45666666664 4677778889999999988 6666344445667788899998666666543 232 23332
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCC---eEEee-CCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcC
Q 016020 162 STKIEYIRRGKPDSGFALFESESLKWPG---FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP 236 (396)
Q Consensus 162 ~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFD-d~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSp 236 (396)
. +..++ .+.. ..|++ -+.|. ..+|+.++..+.|+.++|||+++.+.+..+.. ..+..+.+.+
T Consensus 114 d-----~~~~~-----~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 114 D-----LSSNQ-----AIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp E-----TTTTE-----EEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred E-----cCCCC-----ceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 2 22222 1211 12333 45662 33889899999999999999999998888876 6788888888
Q ss_pred CeEEEEEecCCCeeeeEEEEeecCcEEEEEE-eecccCCc-cchhhh---hcceeeEeecCCeeeEEEcccc---eEEEe
Q 016020 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKK-VDFIEQ---FNEKLLVKQENENLQILDVRNA---ELMEV 308 (396)
Q Consensus 237 g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~-~~L~~sk~-i~FiE~---~~ekLLIKQed~~L~I~Dv~~~---ki~~v 308 (396)
...++... .-.+.+|++.++....... ....+... +.+... ....+++...|+.++|||+.+. +....
T Consensus 181 ~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 181 PMAVVATA----ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp TEEEEEEG----GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred CeeEEEeC----CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 76554433 3468899998876654322 11111111 222210 1223999999999999999987 44555
Q ss_pred cccccC------------CCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeecccccc
Q 016020 309 SRTEFM------------TPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLW 355 (396)
Q Consensus 309 ~~t~~~------------~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~ 355 (396)
...+.. .+.+..|.++++++++-+. |+|.+||++. +++..+..|.-+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP 317 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC
Confidence 555554 6889999999999998876 9999999996 788888877543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=121.84 Aligned_cols=182 Identities=11% Similarity=-0.011 Sum_probs=132.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce---EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE--
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV-- 262 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs---~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~-- 262 (396)
-+.|.+ +|+.++..+.|+.++|||+.+.+ .+..+.. ..|..++++|+-.+++.... .-.++||++++++.
T Consensus 60 ~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~ 136 (377)
T 3dwl_C 60 CVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWW 136 (377)
T ss_dssp EEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES--SSCEEECCC-----CC
T ss_pred EEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec--CCeEEEEEECCcccce
Confidence 356777 68888888999999999999976 6666654 88999999987655555554 45789999999985
Q ss_pred -EEEEEeecc-cCCc---cchhhhhcceeeEeecCCeeeEEEcc------------------cceEEEecccccCCCceE
Q 016020 263 -LKVFYHLLH-RNKK---VDFIEQFNEKLLVKQENENLQILDVR------------------NAELMEVSRTEFMTPSAF 319 (396)
Q Consensus 263 -l~s~~~~L~-~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~------------------~~ki~~v~~t~~~~PsAF 319 (396)
+..+. . |... +.|.+ .+.+|++...|+.+++||+. +++++... .|...+.+.
T Consensus 137 ~~~~~~---~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 137 VSKHLK---RPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp CCEEEC---SSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred eeeEee---cccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 44444 3 4554 77887 78899999999999999995 56677766 888889999
Q ss_pred EEeecCeEEEEEEc-CeEEEEeccc-ce----eeeeccccccCC---CCCCCcEEEccCCcEEEEeccC
Q 016020 320 IFLYENQLFLTFRN-RTVAVWNFRG-EL----VTSFEDHLLWHP---DCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 320 iFly~~qLFLTfs~-gti~iWd~~g-eL----~t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~~~ 379 (396)
.|.++++++++-+. |+|.+||++. +. +..+..|..+.. ..+++++.++...|-++-|-..
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 99999999888876 8999999987 45 677887765422 2667888888888877766544
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-12 Score=114.46 Aligned_cols=147 Identities=13% Similarity=0.169 Sum_probs=121.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCc--eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknY--s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+.|.+ +|+.|+..+.|+.+++||+.+. +++..+.+ ..|..+.++|+-.+|+.... +..++||++.+++.....
T Consensus 67 ~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 67 VAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR--DKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEECTTSCEEEE
T ss_pred EEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC--CCeEEEEECCCCCCeEEE
Confidence 67887 7999999999999999999865 46777775 78999999987776677665 567999999998765544
Q ss_pred EeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceE--EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 267 YHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki--~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
..+-.|+.. +.|.+ .+++|++...|+.+++||+.+++. ..+..+|...+.+.-|.+++++++|-+. |+|.+||
T Consensus 144 ~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 144 SVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 433355555 67777 788999999999999999999864 4577889999999999999999999887 9999999
Q ss_pred c
Q 016020 341 F 341 (396)
Q Consensus 341 ~ 341 (396)
.
T Consensus 223 ~ 223 (345)
T 3fm0_A 223 Q 223 (345)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-12 Score=125.81 Aligned_cols=181 Identities=13% Similarity=0.191 Sum_probs=142.3
Q ss_pred CCCCeE---EeeCCCCcEEEeecCCCeEEEEeccCce-----EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 186 KWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 186 ~~PgfV---EFDd~NgkIlt~~a~d~~YrVwdlknYs-----~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
.|.+.| .|.+.++.+|+..+.|+.+||||+.+.. ....+.+ ..|..+.+||+-.+|+.... +..++||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~--Dg~v~vw 457 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW--DGELRLW 457 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET--TSEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC--CCcEEEE
Confidence 577754 5777788999999999999999997642 3344444 77999999987777777665 5789999
Q ss_pred EeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec---ccccCCCceEEEeecC--eE
Q 016020 256 SIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYEN--QL 327 (396)
Q Consensus 256 ~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~---~t~~~~PsAFiFly~~--qL 327 (396)
|+.+|+.+..+. .|+.. +.|.+ .+.+|+....|+.++|||+.......+. ..|.....+..|.+++ .+
T Consensus 458 d~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 458 DLAAGVSTRRFV---GHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp ETTTTEEEEEEE---CCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred ECCCCcceeEEe---CCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999988876 66666 67877 8999999999999999999877665554 4577778899999976 56
Q ss_pred EEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEccCCcE
Q 016020 328 FLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQDL 372 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ 372 (396)
+++-+. |+|++||++. +++..+..|--+... ++++++++|...|=
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 777775 9999999988 688889888654322 56777777766653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-11 Score=123.99 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=145.0
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
--+.|++ +|+.++....|+.++|||+.+.+.+.++.. ..|..+.|||+--.++.... ...++||++++|+.+..+
T Consensus 17 ~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 17 KGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp EEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEE
Confidence 4567887 789999999999999999999999888875 78999999987766666655 567899999999999888
Q ss_pred EeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEe
Q 016020 267 YHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd 340 (396)
. .|... +.|.+ .+.+|++...|+.+++||+.++ ++..+...+...+.+..|.+ +++++++.+. |+|.+||
T Consensus 94 ~---~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 94 E---AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp E---CCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred e---cCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 7 45554 77877 7889999999999999999997 77888888999999999999 7878887776 9999999
Q ss_pred ccc-ceeeeecccc----ccCCCCC--CCcEEEccCCcEEEEecc
Q 016020 341 FRG-ELVTSFEDHL----LWHPDCN--TNNIYITSDQDLIISYCK 378 (396)
Q Consensus 341 ~~g-eL~t~fedh~----l~~~~c~--~n~~~it~~qd~ii~~~~ 378 (396)
.++ +....+..|. .+...++ +++.+++...|=-|.-..
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 976 5555554432 1122244 777777776664444333
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-12 Score=113.22 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=152.3
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeCC-CCcEEE
Q 016020 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF---VEFDDV-NGKVLT 202 (396)
Q Consensus 127 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---VEFDd~-NgkIlt 202 (396)
.+...|+++-++....-|++.| .|. .++.-.+. .+ .+.++- .--.|.+- +.|.+. +|+.|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s---~D~--~v~iw~~~-----~~---~~~~~~--~l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCS---SDK--TIKIFEVE-----GE---THKLID--TLTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEEBC-----SS---CBCCCE--EECCCSSCEEEEEECCGGGCSEEE
T ss_pred CCcCceEEEEECCCCCEEEEEe---CCC--EEEEEecC-----CC---CcEEEE--EEccccCCeEEEEecCCCcCCEEE
Confidence 3556788888887666665533 222 23332221 00 011111 11134443 467543 589999
Q ss_pred eecCCCeEEEEeccCce--EEEEecc--CceEEEEEcC---CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc
Q 016020 203 YSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (396)
Q Consensus 203 ~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSp---g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~ 275 (396)
..+.|+++||||+++.+ .+..+.. ..|..+.++| |.+|+... . +..++||++.+++...... +..|...
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s-~--d~~v~~wd~~~~~~~~~~~-~~~h~~~ 147 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS-S--DGKVSVVEFKENGTTSPII-IDAHAIG 147 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-T--TSEEEEEEBCSSSCBCCEE-EECCSSC
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEE-C--CCcEEEEEecCCCceeeee-eecccCc
Confidence 99999999999999863 5666653 7899999998 45554433 3 4678999999875321111 1144443
Q ss_pred ---cchhhh------------hcceeeEeecCCeeeEEEcccce----EEEecccccCCCceEEEeecC---eEEEEEEc
Q 016020 276 ---VDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN---QLFLTFRN 333 (396)
Q Consensus 276 ---i~FiE~------------~~ekLLIKQed~~L~I~Dv~~~k----i~~v~~t~~~~PsAFiFly~~---qLFLTfs~ 333 (396)
+.|.+. .+.+|+....|+.++|||+.+++ +.....+|..++.+.-|.+++ ++++|-+.
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 455542 25689999999999999999876 667788999999999999984 88888886
Q ss_pred -CeEEEEecccc----eeeee--cccccc---CCCCCCCcEEEccCCcEEEEeccCCCCCccc
Q 016020 334 -RTVAVWNFRGE----LVTSF--EDHLLW---HPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (396)
Q Consensus 334 -gti~iWd~~ge----L~t~f--edh~l~---~~~c~~n~~~it~~qd~ii~~~~~~~~~~~~ 386 (396)
|+|.|||.+.. ....+ ..|.-+ ....|++++++|+..|=.|--.+...+..|.
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~ 290 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEE
Confidence 99999999862 12223 233211 1225677777776666444434443334443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-10 Score=108.37 Aligned_cols=228 Identities=12% Similarity=0.137 Sum_probs=153.6
Q ss_pred hhhhhhccccceeeeccccceEE-Ee-------cCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhC
Q 016020 100 IVFALAHSGVCAAFSRETNRRIC-FL-------NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic-~l-------N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~g 171 (396)
.|+.....+.++.|+..+++-.. ++ -..++.-+|++=++.+...|+++| .+++ .. .|.-+. +
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as--~~~d-~~--i~iwd~---~-- 165 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS--SKVP-AI--MRIIDP---S-- 165 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE--SCSS-CE--EEEEET---T--
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE--CCCC-CE--EEEeEC---C--
Confidence 34444456667777755443222 11 123445688888888777777744 3333 22 222222 1
Q ss_pred CCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEecCC
Q 016020 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSS 247 (396)
Q Consensus 172 k~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q~~~ 247 (396)
.+.++++-+--..---|.|.+ +|+.+++.+.+ ..++|+..+.+.+..... ..|..+++||+-..++.....
T Consensus 166 ---~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d 240 (365)
T 4h5i_A 166 ---DLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLK 240 (365)
T ss_dssp ---TTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred ---CCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence 223344322111123478988 89998887755 556666666666554432 568999999765555554433
Q ss_pred --CeeeeEEEEeecCcEEEE-EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE-ecccccCCCceEE
Q 016020 248 --SHVPLKILSIEDGTVLKV-FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFI 320 (396)
Q Consensus 248 --~~iplkIl~IetG~~l~s-~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~-v~~t~~~~PsAFi 320 (396)
..+.+.+|++.++..... ...+-.+.+. ++|.+ .+.+|++...|+.++|||+.+++++. ++.+|..++.+.-
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence 346788999998876443 2223355555 68888 89999999999999999999999887 5789999999999
Q ss_pred EeecCeEEEEEEc-CeEEEEeccc
Q 016020 321 FLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 321 Fly~~qLFLTfs~-gti~iWd~~g 343 (396)
|+|++++++|-|. +||+|||+..
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999998 9999999965
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-12 Score=115.95 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=132.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcC---CeEEEEEecCCCeeeeEEEEeecCc--
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT-- 261 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSp---g~~Ll~~q~~~~~iplkIl~IetG~-- 261 (396)
+.|++ +|+.|+..+.|+++||||+++.+ .+..+.+ ..|..+++++ |-+| +.... +..++||++++|+
T Consensus 19 v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l-~s~s~--D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 19 AQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL-ASCSY--DRKVIIWREENGTWE 94 (316)
T ss_dssp EEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCE-EEEET--TSCEEEECCSSSCCC
T ss_pred eeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEE-EEEEC--CCEEEEEECCCCcce
Confidence 57887 79999999999999999999875 5667765 7899999985 5554 44443 4679999999985
Q ss_pred EEEEEEeecccCCc---cchhhh-hcceeeEeecCCeeeEEEcccce---EEEecccccCCCceEEEeec----------
Q 016020 262 VLKVFYHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYE---------- 324 (396)
Q Consensus 262 ~l~s~~~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~~k---i~~v~~t~~~~PsAFiFly~---------- 324 (396)
.+..+. .|... +.|.+. .+.+|+....|+.+++||+.++. +..+...|.....+..|.++
T Consensus 95 ~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 95 KSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp EEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred EEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccc
Confidence 333333 45444 778774 37889999999999999999863 24566677777788888776
Q ss_pred -------CeEEEEEEc-CeEEEEeccc----ceeeeeccccccCCC---CCC----CcEEEccCCcEEEEecc
Q 016020 325 -------NQLFLTFRN-RTVAVWNFRG----ELVTSFEDHLLWHPD---CNT----NNIYITSDQDLIISYCK 378 (396)
Q Consensus 325 -------~qLFLTfs~-gti~iWd~~g----eL~t~fedh~l~~~~---c~~----n~~~it~~qd~ii~~~~ 378 (396)
+++++|-+. ++|++||.++ +++..|+.|.-|+.. .|+ ++.++|..+|=-|-...
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 367777775 8999999974 266788888544321 333 37788887775444443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=117.09 Aligned_cols=178 Identities=13% Similarity=0.198 Sum_probs=137.6
Q ss_pred eEEeeCCCCcEE--EeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 190 FVEFDDVNGKVL--TYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 190 fVEFDd~NgkIl--t~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
-|-|.+ +|+.+ |.++.|+++||||+++.++++.+.. ..|.+|.|||+-.+++..... .+.+|+..+|+.+...
T Consensus 138 ~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~---~~~~~~~~~~~~~~~~ 213 (365)
T 4h5i_A 138 LVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS---SLEVISTVTGSCIARK 213 (365)
T ss_dssp EEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS---CEEEEETTTCCEEEEE
T ss_pred EEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce---eEEEEEeccCcceeee
Confidence 467887 77764 4556799999999999999999976 679999999887777776653 4688999999987764
Q ss_pred EeecccCCc---cchhhhhcceeeEeecCC----eeeEEEcccceEE----EecccccCCCceEEEeecCeEEEEEEc-C
Q 016020 267 YHLLHRNKK---VDFIEQFNEKLLVKQENE----NLQILDVRNAELM----EVSRTEFMTPSAFIFLYENQLFLTFRN-R 334 (396)
Q Consensus 267 ~~~L~~sk~---i~FiE~~~ekLLIKQed~----~L~I~Dv~~~ki~----~v~~t~~~~PsAFiFly~~qLFLTfs~-g 334 (396)
... .++.. +.|.+ .+.+|+....+. .+++||+...+.. ....++.....++-|.++++++.+-+. |
T Consensus 214 ~~~-~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 214 TDF-DKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp CCC-CTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred ecC-CCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 422 33332 78888 888998887766 6889999886543 345677788899999999999998887 8
Q ss_pred eEEEEeccc-ceeee-eccccccCC---CCCCCcEEEccCCcEE
Q 016020 335 TVAVWNFRG-ELVTS-FEDHLLWHP---DCNTNNIYITSDQDLI 373 (396)
Q Consensus 335 ti~iWd~~g-eL~t~-fedh~l~~~---~c~~n~~~it~~qd~i 373 (396)
+|.|||++. +++.. ++.|.-++- ..||+++.+|...|=-
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t 335 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT 335 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe
Confidence 999999975 76655 577876533 3788888888766633
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-11 Score=106.90 Aligned_cols=228 Identities=12% Similarity=0.140 Sum_probs=162.6
Q ss_pred hhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee
Q 016020 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (396)
Q Consensus 103 ~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~ 182 (396)
+-...|...+||..+++.+..+.... -+.++-++..+..|++. .+++ ..++. .+ +.. +..+-..
T Consensus 49 ~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~---~~~~-~~v~v--~d---~~~-----~~~~~~~ 112 (391)
T 1l0q_A 49 ANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVT---NMAS-STLSV--ID---TTS-----NTVAGTV 112 (391)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEE---ETTT-TEEEE--EE---TTT-----TEEEEEE
T ss_pred ECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEE---ECCC-CEEEE--EE---CCC-----CeEEEEE
Confidence 33477899999999999998887655 77889888777666552 2222 22332 22 222 2222221
Q ss_pred cccCCCCeEEeeCCCCc-EEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeec
Q 016020 183 ESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 183 ~~l~~PgfVEFDd~Ngk-Ilt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Iet 259 (396)
..-..|.-+.|++ +|+ +++....++.+++||+.+.+.+..+.. ..+..+.++|+- .|++.... .-.+.+||+.+
T Consensus 113 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~ 189 (391)
T 1l0q_A 113 KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD--SMSISVIDTVT 189 (391)
T ss_dssp ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT--TTEEEEEETTT
T ss_pred eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCC--CCEEEEEECCC
Confidence 2223466788988 555 546777899999999999999888875 788999999765 44455544 34589999999
Q ss_pred CcEEEEEEeecccCCccchhhhhcceeeEee---cCCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEE-cC
Q 016020 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NR 334 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ---ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs-~g 334 (396)
|+.+..+.+. ..-..+.|.+ .+++|++.. .+..|.+||+.+++.+...+.+. .|.+..|.++++ +|++-+ ++
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 190 NSVIDTVKVE-AAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp TEEEEEEECS-SEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CeEEEEEecC-CCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCC
Confidence 9988777621 1112377777 788999988 68999999999999888766654 578899999886 556755 49
Q ss_pred eEEEEeccc-ceeeeeccc
Q 016020 335 TVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 335 ti~iWd~~g-eL~t~fedh 352 (396)
+|.+||.+. +++..++-|
T Consensus 267 ~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 267 TVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EEEEEETTTTEEEEEEECS
T ss_pred EEEEEECCCCcEEEEEECC
Confidence 999999985 677666655
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-11 Score=111.62 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=126.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccC--ceEEEEec----cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC----
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS----DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG---- 260 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlkn--Ys~lysIs----~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG---- 260 (396)
+.|++ . .++..+.|+.+|+||+++ ++.+..+. ...|..++++|+--+|+.... +..++||+++++
T Consensus 20 ~~~s~--~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 20 FDFSQ--G-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF--DSTVSIWAKEESADRT 94 (330)
T ss_dssp EEEET--T-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET--TSCEEEEEC-------
T ss_pred eccCC--C-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC--CCcEEEEEcccCcCcc
Confidence 56665 2 888889999999999987 46666662 267999999987776676665 567899999754
Q ss_pred ---cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEccc----ceEEEecccccCCCceEEEeecCeEEEE
Q 016020 261 ---TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRN----AELMEVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 261 ---~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~----~ki~~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
+.+..+. .|... +.|.+ .+++|+....|+.++|||+.+ .+++.+...|...+.+..|.+++++++|
T Consensus 95 ~~~~~~~~~~---~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 95 FEMDLLAIIE---GHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp CCCEEEEEEC-------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred ccceeEEEEc---CCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 3333333 56555 78887 799999999999999999953 3677788899999999999999999999
Q ss_pred EEc-CeEEEEeccc---ceeeeeccccccCC---CCCC--CcEEEccCCc
Q 016020 331 FRN-RTVAVWNFRG---ELVTSFEDHLLWHP---DCNT--NNIYITSDQD 371 (396)
Q Consensus 331 fs~-gti~iWd~~g---eL~t~fedh~l~~~---~c~~--n~~~it~~qd 371 (396)
-+. |+|++||... +.+..+..|.-+.. ..++ ....+|+..|
T Consensus 171 ~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT
T ss_pred EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC
Confidence 986 9999999864 46778888864432 1344 3455555554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-10 Score=99.11 Aligned_cols=231 Identities=14% Similarity=0.185 Sum_probs=159.5
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
...|.-+... ..+++.-...|....++..++............+ ..+.+...+..|++.| .|. .++..
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~s---~d~--~~~~~---- 155 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV-LSVAFSSDNRQIVSGS---RDK--TIKLW---- 155 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEECTTSSCEEEEE---TTS--CEEEE----
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCce-eEEEEeecCccceeec---CCC--eEEEE----
Confidence 3456665554 3456666777888889888887777766655544 4566666777666543 222 11111
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeE
Q 016020 166 EYIRRGKPDSGFALFESESLKWPG---FVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM 239 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~ 239 (396)
++.. .. ........|.+ .+.|... .+.+++..+.|+.+++||+++.+.+..+.+ ..|..|.++|+-.
T Consensus 156 -d~~~-----~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 156 -NTLG-----VC-KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp -CTTS-----CE-EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred -EeCC-----Cc-eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence 1110 10 11111112222 3455542 456777788999999999999999999876 7899999998766
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeecccC--CccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-------
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR------- 310 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s--k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~------- 310 (396)
+++.... +..++|||+.+++.+..+.. +. ..+.|.+ +++++....|+.|+|||+.++++.....
T Consensus 229 ~l~s~s~--Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 301 (340)
T 4aow_A 229 LCASGGK--DGQAMLWDLNEGKHLYTLDG---GDIINALCFSP--NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301 (340)
T ss_dssp EEEEEET--TCEEEEEETTTTEEEEEEEC---SSCEEEEEECS--SSSEEEEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred EEEEEeC--CCeEEEEEeccCceeeeecC---CceEEeeecCC--CCceeeccCCCEEEEEECCCCeEEEeccccceeee
Confidence 6666655 56789999999999988772 22 1255654 5688888999999999999988776443
Q ss_pred --cccCCCceEEEeecCeEEEEEEc-CeEEEEecc
Q 016020 311 --TEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 311 --t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
.+.....+.-|.+++++++|-+. |+|.|||++
T Consensus 302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 45566778889999999999877 999999976
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-11 Score=106.82 Aligned_cols=219 Identities=13% Similarity=0.151 Sum_probs=152.1
Q ss_pred hccccceeeeccccceEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-
Q 016020 105 AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES- 182 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~- 182 (396)
...+.-+.|+..+++..-.+.. +..-|.++-++. +.+.|++.+ .|. .++.-.+ ..++.. ..+..
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~~~~---~dg--~i~iw~~-----~~~~~~---~~~~~~ 85 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERI-HGGGINTLDIEPVEGRYMLSGG---SDG--VIVLYDL-----ENSSRQ---SYYTCK 85 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCC-CSSCEEEEEECTTTCCEEEEEE---TTS--CEEEEEC-----CCCSSS---SCEEEC
T ss_pred eccCcceeeccccCcceeeeec-cCCcEEEEEEecCCCCEEEEEc---CCC--eEEEEEC-----CCCccc---ceEecc
Confidence 3344456677777777766665 667788899988 555555533 232 2332222 111111 11110
Q ss_pred -----------cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCe---EEEEEecCC
Q 016020 183 -----------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI---MLLIFNRSS 247 (396)
Q Consensus 183 -----------~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~---~Ll~~q~~~ 247 (396)
..-...--+.|.+.++..++..+.|+.+++||+.+.+.+..+.. ..+..+.++|.. .+++....
T Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (408)
T 4a11_B 86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR- 164 (408)
T ss_dssp EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES-
T ss_pred ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC-
Confidence 01112234678887888888899999999999999998888875 788999999743 24444444
Q ss_pred CeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcce-eeEeecCCeeeEEEcccce-EEEec-------------
Q 016020 248 SHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEK-LLVKQENENLQILDVRNAE-LMEVS------------- 309 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ek-LLIKQed~~L~I~Dv~~~k-i~~v~------------- 309 (396)
...+.+|++.+|+.+..+. .+... +.|.+ .+.+ |++...|+.|++||+++++ .....
T Consensus 165 -~~~v~~~d~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 165 -GPKVQLCDLKSGSCSHILQ---GHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp -SSSEEEEESSSSCCCEEEC---CCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred -CCeEEEEeCCCcceeeeec---CCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence 3578999999999988776 45454 77777 5665 7789999999999998865 33322
Q ss_pred --ccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 310 --RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 310 --~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
..+...+.+..|.++++++++.+. |+|.+||++.
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 567778889999999998888876 8999999987
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-11 Score=111.40 Aligned_cols=182 Identities=12% Similarity=0.157 Sum_probs=132.4
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce-----------EEEEeccCc--------------eEEEEEcCCe--EEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----------MLYSISDKH--------------VQEIKISPGI--MLLI 242 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs-----------~lysIs~~~--------------VqEIkiSpg~--~Ll~ 242 (396)
-+.|++ +|..|+....|+.++|||+.+.+ .+..+.+-. |..++++|+- -.++
T Consensus 33 ~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 33 TVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 468998 89999999999999999999776 566666544 9999999885 3334
Q ss_pred EecCCCeeeeEEEEeecCcEEEE------------------------------------E-EeecccCCc---cchhhhh
Q 016020 243 FNRSSSHVPLKILSIEDGTVLKV------------------------------------F-YHLLHRNKK---VDFIEQF 282 (396)
Q Consensus 243 ~q~~~~~iplkIl~IetG~~l~s------------------------------------~-~~~L~~sk~---i~FiE~~ 282 (396)
.... +..++||++.+++.... . .+...|+.. +.|.+ .
T Consensus 112 s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~ 188 (447)
T 3dw8_B 112 LSTN--DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-D 188 (447)
T ss_dssp EEEC--SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-T
T ss_pred EeCC--CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-C
Confidence 4433 57789999999776321 0 112245554 77888 7
Q ss_pred cceeeEeecCCeeeEEEcc-cceEEEe-------cccccCCCceEEEeecC-eEEEEEEc-CeEEEEeccc-ce----ee
Q 016020 283 NEKLLVKQENENLQILDVR-NAELMEV-------SRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFRG-EL----VT 347 (396)
Q Consensus 283 ~ekLLIKQed~~L~I~Dv~-~~ki~~v-------~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~g-eL----~t 347 (396)
+++|+.. .|+.|+|||+. .++.+.+ ..++...+.+..|.+++ +++++-+. |+|.+||++. ++ +.
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 267 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK 267 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence 8999998 89999999999 4656652 56788889999999998 88888876 9999999987 55 67
Q ss_pred eeccccc------------c---CCCCCCCcEEEccCCcEEEEe
Q 016020 348 SFEDHLL------------W---HPDCNTNNIYITSDQDLIISY 376 (396)
Q Consensus 348 ~fedh~l------------~---~~~c~~n~~~it~~qd~ii~~ 376 (396)
.++.|.- . ....+++.++++.+...|.-|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iw 311 (447)
T 3dw8_B 268 LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVW 311 (447)
T ss_dssp EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEE
T ss_pred EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEE
Confidence 8888753 1 122567777777666444333
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-11 Score=109.59 Aligned_cols=243 Identities=9% Similarity=0.153 Sum_probs=156.3
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccc-----------eEEEecCCC-----------CceEEEEeeecCC--
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-----------RICFLNVSP-----------DEVIRSLFYNKNN-- 141 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~-----------~ic~lN~s~-----------~evIrsifyN~~n-- 141 (396)
...|.-+-+. ..++++-...|....|+..+++ .+..+.... ++-|.+|=++...
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3455555544 3466666778999999998887 466666433 1667888888765
Q ss_pred CeEEEEEeEecCCCceeeeEeeehhhh---------hhCCCCC-------CCcceee------------cccCCC---Ce
Q 016020 142 DSLITVSVYASDNFSSLKCRSTKIEYI---------RRGKPDS-------GFALFES------------ESLKWP---GF 190 (396)
Q Consensus 142 ~slI~vSv~~sd~~s~L~cr~~~~~~i---------~~gk~~~-------~~~LF~~------------~~l~~P---gf 190 (396)
..|++.| .|. .++.-.+.-... ..|++.. ..|.+.. ....|. --
T Consensus 108 ~~l~s~s---~d~--~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 108 AQFLLST---NDK--TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp SEEEEEE---CSS--CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred ceEEEeC---CCC--eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 3444432 233 333332221100 0011000 0011100 011233 35
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe--------c--cCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeec
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--------S--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI--------s--~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Iet 259 (396)
+.|.+ +|+.++.. .|+.++|||+.+....+.+ . ...|..+.++|.- .+++.... +..++|||+.+
T Consensus 183 ~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~ 258 (447)
T 3dw8_B 183 ISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS--KGTIRLCDMRA 258 (447)
T ss_dssp EEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET--TSCEEEEETTT
T ss_pred EEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC--CCeEEEEECcC
Confidence 78888 78888877 7999999999965544442 2 2669999999975 45555555 45789999999
Q ss_pred CcE----EEEEEeecccC---------------CccchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCc--
Q 016020 260 GTV----LKVFYHLLHRN---------------KKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPS-- 317 (396)
Q Consensus 260 G~~----l~s~~~~L~~s---------------k~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~Ps-- 317 (396)
|+. +..+. .+. ..+.|.+ .+.+|+...+ +.++|||+.+ ++.+.+...|....+
T Consensus 259 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l 333 (447)
T 3dw8_B 259 SALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKL 333 (447)
T ss_dssp CSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTH
T ss_pred CccccceeeEec---cCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccc
Confidence 997 56665 333 2378888 8899999999 9999999998 888877766643222
Q ss_pred -------------eEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 318 -------------AFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 318 -------------AFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
..-|.++++++++-+. |+|.+||++..
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 2789999998888876 99999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-11 Score=118.11 Aligned_cols=257 Identities=10% Similarity=0.105 Sum_probs=174.9
Q ss_pred chhhhhhccccceeeeccccceEE--EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 016020 99 DIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic--~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 176 (396)
.+|+.-...|....||..+++..+ .+. .+..-|++|=++..+..|++++. ..+.+ -+++... .|+...
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~-~~~~~--~~v~~wd-----~~~~~~- 141 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGE-GRERF--GHVFLFD-----TGTSNG- 141 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEEC-CSSCS--EEEEETT-----TCCBCB-
T ss_pred cEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEEC-CCCce--eEEEEee-----CCCCcc-
Confidence 466666678999999987665443 343 34556889999987776665432 11111 1222221 121100
Q ss_pred CcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEE
Q 016020 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 177 ~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkI 254 (396)
-+. .--...--|.|.+.....++..+.|+++|+||+.+++++..+.+ ..|..+++||+--+|+.... +..++|
T Consensus 142 --~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~--D~~i~l 216 (611)
T 1nr0_A 142 --NLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG--DGTIVL 216 (611)
T ss_dssp --CCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEE
T ss_pred --eec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC--CCcEEE
Confidence 011 01111235788884444688899999999999999999999986 67999999987766676665 567999
Q ss_pred EEeecCcEEEEEEe----ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc---cCCCceEEEeec
Q 016020 255 LSIEDGTVLKVFYH----LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE---FMTPSAFIFLYE 324 (396)
Q Consensus 255 l~IetG~~l~s~~~----~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~---~~~PsAFiFly~ 324 (396)
|++.+|+.+..+.. ...|+.. +.|.+ .+++|+....|+.++|||+.++++....+.+ .....+..| +
T Consensus 217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~ 293 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--T 293 (611)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--C
T ss_pred EECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--c
Confidence 99999999887631 0135544 78888 8999999999999999999999988755432 222334444 7
Q ss_pred CeEEEEEEc-CeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCcEE
Q 016020 325 NQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQDLI 373 (396)
Q Consensus 325 ~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd~i 373 (396)
++.+++.+. |++.+||.+. +....+..|.-+.. ..|+++..+|+..|=-
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~ 347 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH 347 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence 778888887 9999999987 56667777754322 2567777777665533
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=111.82 Aligned_cols=180 Identities=9% Similarity=0.064 Sum_probs=135.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC-cEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG-TVLKV 265 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG-~~l~s 265 (396)
-+.+++...+..++...+.|+.++|||+++.+.+.++.. ..|..++++++..++... -.++||++.++ +.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYG-----DVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEET-----TEEEEEESSTTCCBSSC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEc-----CEEEEEECCCCceeeEE
Confidence 566788775555555667789999999999999988876 789999999998766542 24899999999 76665
Q ss_pred EEeecccCCccchhhhhcceeeE--eecCCeeeEEEcccce----------------EEEecccccCCCceEEEeecCeE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNAE----------------LMEVSRTEFMTPSAFIFLYENQL 327 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLI--KQed~~L~I~Dv~~~k----------------i~~v~~t~~~~PsAFiFly~~qL 327 (396)
+.. ...-+.|.. .+|++ ...++.+++||+.+++ +..+..+|...+.+.-|.+++++
T Consensus 136 ~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 136 DIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp CEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred ecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 542 212233333 67777 5899999999999876 25677899999999999999999
Q ss_pred EEEEEc-Ce-EEEEecc-cceeeeec-c-ccccC---CCCCCCcEEEccCCcEEEEecc
Q 016020 328 FLTFRN-RT-VAVWNFR-GELVTSFE-D-HLLWH---PDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 328 FLTfs~-gt-i~iWd~~-geL~t~fe-d-h~l~~---~~c~~n~~~it~~qd~ii~~~~ 378 (396)
++|-+. |+ |++||++ |+.+..|. + |.-.. ...|++++++|...|=-|--.+
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 999988 88 9999998 47888887 3 54332 2267888888887775444443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-12 Score=114.68 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=128.4
Q ss_pred EEeeC-CCCcEEEeecCCCeEEEEeccCc--eEEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 191 VEFDD-VNGKVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 191 VEFDd-~NgkIlt~~a~d~~YrVwdlknY--s~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+.|.+ .+|..|+..+.|+.++|||+++. +.++.+.+ ..|..+.++|+ -.+|+.... +..++||++.++...
T Consensus 63 v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~--D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--DGAISLLTYTGEGQW 140 (316)
T ss_dssp EEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECS--SSCEEEEEECSSSCE
T ss_pred EEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcC--CCCEEEEecCCCCCc
Confidence 46764 35889999999999999999986 46777764 67999999985 333444444 467899999987543
Q ss_pred EEEEeecccCCc---cchhhh----------------hcceeeEeecCCeeeEEEcccc---eEEEecccccCCCceEEE
Q 016020 264 KVFYHLLHRNKK---VDFIEQ----------------FNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIF 321 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~----------------~~ekLLIKQed~~L~I~Dv~~~---ki~~v~~t~~~~PsAFiF 321 (396)
.....+-.|+.. +.|.+. .+.+|+....|+.++|||+.++ +.......|..+..+.-|
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~ 220 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence 222222234433 445442 1468999999999999999865 567788899999999999
Q ss_pred eecC----eEEEEEEc-CeEEEEeccc--------ceeeeeccccccCCCCCCCcEEEccCCcEEEEecc
Q 016020 322 LYEN----QLFLTFRN-RTVAVWNFRG--------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 322 ly~~----qLFLTfs~-gti~iWd~~g--------eL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~ 378 (396)
.+++ ++++|-+. |+|.+||++. .++..+++.+.-....|++++++|+..|=-|-..+
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9986 77888876 9999999875 12223333222222356777777665553333333
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-11 Score=105.69 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=118.1
Q ss_pred EEeeCC-CCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 191 VEFDDV-NGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 191 VEFDd~-NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+.|.+. +|..++..+.|+.++|||+.+.+ .+..+.. ..|..+.++|. -.+++.... ...++||++.+++..
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKVSVVEFKENGTT 138 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TSEEEEEECCTTSCC
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC--CCcEEEEecCCCCce
Confidence 567542 48899999999999999999987 6666654 78999999986 444444444 467899999999655
Q ss_pred EEEEeecccCCc---cchhhh------------hcceeeEeecCCeeeEEEcccce----EEEecccccCCCceEEEeec
Q 016020 264 KVFYHLLHRNKK---VDFIEQ------------FNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYE 324 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~------------~~ekLLIKQed~~L~I~Dv~~~k----i~~v~~t~~~~PsAFiFly~ 324 (396)
....+. .+... +.|.+. .+.+|++...|+.|++||+.+++ +......|...+.+..|.++
T Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 217 (379)
T 3jrp_A 139 SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217 (379)
T ss_dssp CEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred eeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence 544322 44443 667764 58899999999999999999864 55567788889999999999
Q ss_pred ---CeEEEEEEc-CeEEEEeccc
Q 016020 325 ---NQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 325 ---~qLFLTfs~-gti~iWd~~g 343 (396)
++++++.+. |+|.+||++.
T Consensus 218 ~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 218 VLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp CSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCCCeEEEEeCCCEEEEEeCCC
Confidence 888888886 9999999987
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-11 Score=107.10 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=117.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.|++ +|..++..+.|+++||||+++.+.+..+.+ ..|..+.+||+-..++.... +-.++|||+. |+.......
T Consensus 82 ~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~--d~~i~~wd~~-~~~~~~~~~ 157 (343)
T 2xzm_R 82 LALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA--EREIKLWNIL-GECKFSSAE 157 (343)
T ss_dssp EEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET--TSCEEEEESS-SCEEEECCT
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC--CCEEEEEecc-CCceeeeec
Confidence 56877 788889999999999999999999988875 78999999987666666555 5779999997 433332221
Q ss_pred ecccCCc---cchhhh---------hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-Ce
Q 016020 269 LLHRNKK---VDFIEQ---------FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RT 335 (396)
Q Consensus 269 ~L~~sk~---i~FiE~---------~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gt 335 (396)
...+... +.|.+. ++.+|+....|+.|++|| .+.++..+...|...+.+.-|.+++++++|-+. |+
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 1122222 444442 347899999999999999 566777777889999999999999999999886 99
Q ss_pred EEEEeccc--ceeeee
Q 016020 336 VAVWNFRG--ELVTSF 349 (396)
Q Consensus 336 i~iWd~~g--eL~t~f 349 (396)
|.+||+.. .....+
T Consensus 237 v~iwd~~~~~~~~~~~ 252 (343)
T 2xzm_R 237 LLIWDILNLTYPQREF 252 (343)
T ss_dssp EEEEESSCCSSCSEEE
T ss_pred EEEEECCCCcccceee
Confidence 99999943 344444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=113.34 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=139.3
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE----EEec--cCceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecC
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l----ysIs--~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG 260 (396)
+.|+.+++....+++..+.|+.++|||+.....+ ..+. ...|..+.++| +-.+|+.... +..++||++.+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~--dg~v~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE--DCTVMVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET--TSEEEEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC--CCeEEEEEccCC
Confidence 4577787755566666788999999999665432 2232 37899999998 5555555554 467999999999
Q ss_pred -------cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec--ccccCCCceEEEeecCeEE
Q 016020 261 -------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLF 328 (396)
Q Consensus 261 -------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~--~t~~~~PsAFiFly~~qLF 328 (396)
+.+..+. .|... +.|.+.-...|++...|+.|+|||+.+++..... ..|...+.+..|.++++++
T Consensus 115 ~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 115 GLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp CCSSCBCSCSEEEE---CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCccccCCceEEec---CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 5566665 55555 6777733368999999999999999999999887 7888999999999999998
Q ss_pred EEEEc-CeEEEEeccc-ceeeee-ccccccC----CCCCCCcEEEcc---CCcEEEEeccCC
Q 016020 329 LTFRN-RTVAVWNFRG-ELVTSF-EDHLLWH----PDCNTNNIYITS---DQDLIISYCKAE 380 (396)
Q Consensus 329 LTfs~-gti~iWd~~g-eL~t~f-edh~l~~----~~c~~n~~~it~---~qd~ii~~~~~~ 380 (396)
++-+. |+|.+||++. +.+..+ ..|.-.. ...+++.++++. ..|=-|......
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence 88876 9999999886 677677 5554321 125677777776 455555544443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=112.30 Aligned_cols=169 Identities=11% Similarity=0.034 Sum_probs=123.0
Q ss_pred EEeecCCCeEEEEeccC---------ceEEEEecc---CceEEEEEcC--CeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 201 LTYSAQDSIYKVFDLKN---------YTMLYSISD---KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 201 lt~~a~d~~YrVwdlkn---------Ys~lysIs~---~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
++..+.|+.+++|+..+ .+.+..+.. ..|..+.++| .-.+++.... +..++|||+++|+.+..+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~--dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN--RGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET--TCCEEEEESSSSCEEEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC--CCcEEEEECCCCcEEEEE
Confidence 66678899999997664 444444441 4689999998 5555555554 567899999999996544
Q ss_pred EeecccCC---ccchhhhhcceeeEeecCCeeeEEEcccceEE-Eeccc-ccCCCceEEEeecCeEEEEEEcCeEEEEec
Q 016020 267 YHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRNAELM-EVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (396)
Q Consensus 267 ~~~L~~sk---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~-~v~~t-~~~~PsAFiFly~~qLFLTfs~gti~iWd~ 341 (396)
. .++.. .+.|.+ .+.+|++...|+.|+|||+++++.. ..... |..++.+.-|.++++++++-++++|.+||+
T Consensus 166 ~--~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~ 242 (343)
T 3lrv_A 166 S--AKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDL 242 (343)
T ss_dssp C--CCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEET
T ss_pred e--cCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEc
Confidence 3 13332 278888 8899999999999999999999987 55555 889999999999999999999999999999
Q ss_pred cc-ceee---eeccccccCC-----CCCCCcEEEc--c-CCcEEE
Q 016020 342 RG-ELVT---SFEDHLLWHP-----DCNTNNIYIT--S-DQDLII 374 (396)
Q Consensus 342 ~g-eL~t---~fedh~l~~~-----~c~~n~~~it--~-~qd~ii 374 (396)
+. +.+. .+++|..... ..++++++++ . |.++-|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 243 RKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp TSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 98 4433 3444444422 2667888888 6 665544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-11 Score=120.07 Aligned_cols=233 Identities=11% Similarity=0.104 Sum_probs=158.3
Q ss_pred CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeCCCCcEEE
Q 016020 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF---VEFDDVNGKVLT 202 (396)
Q Consensus 126 ~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---VEFDd~NgkIlt 202 (396)
..+...|.+|-++..+..++. +...|. .++.-.+ ..++...+. -....-.|.+. +.|.+ +|+.|+
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~--s~s~D~--~i~~W~~-----~~~~~~~~~--~~~~~~~h~~~v~~v~~s~-~g~~l~ 446 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIV--SASRDK--SIILWKL-----TKDDKAYGV--AQRRLTGHSHFVEDVVLSS-DGQFAL 446 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEE--EEETTS--EEEEEEC-----CCSTTCSCE--EEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred ccCCceeEEEEecCCCCCEEE--EEeCCC--cEEEEEc-----cCCCccccc--ccceecCCCCcEEEEEECC-CCCEEE
Confidence 367778899988876655444 222332 3333322 111111111 11112235554 46777 799999
Q ss_pred eecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cc
Q 016020 203 YSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VD 277 (396)
Q Consensus 203 ~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~ 277 (396)
..+.|+++||||+.+.+.+..+.+ ..|..+.+||+--.++.... +..++||++..+...........|... +.
T Consensus 447 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred EEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC--CCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence 999999999999999999988876 78999999987766666665 577899998654332221111123333 56
Q ss_pred hhhhh-cceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccc
Q 016020 278 FIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLL 354 (396)
Q Consensus 278 FiE~~-~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l 354 (396)
|.+.. ...|+....|+.++|||+.++++..+...|...+.+.-|.+++++++|-+. |+|.+||++. +.+.+++.+-.
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~ 604 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSC
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCc
Confidence 66532 357999999999999999999999999999999999999999999999886 9999999976 66666665432
Q ss_pred cCC--CCCCCcEEEccCCcE
Q 016020 355 WHP--DCNTNNIYITSDQDL 372 (396)
Q Consensus 355 ~~~--~c~~n~~~it~~qd~ 372 (396)
.+. .++++.+..++..+-
T Consensus 605 v~~~~~sp~~~~l~~~~~~~ 624 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATEHG 624 (694)
T ss_dssp EEEEEECSSSSEEEEEETTE
T ss_pred EEEEEEcCCCcEEEEEcCCC
Confidence 211 145555555554443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=122.96 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=113.1
Q ss_pred EeeCC--CCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEEcCCeEEEEEec----------CCCeeeeEE
Q 016020 192 EFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKISPGIMLLIFNR----------SSSHVPLKI 254 (396)
Q Consensus 192 EFDd~--NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIkiSpg~~Ll~~q~----------~~~~iplkI 254 (396)
-|.++ +|..|++.+.|+++||||+++.+++..+.+ ..+..+.+||+-.+++... ...+..+++
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 44443 679999999999999999999999999974 2466778997666554322 234688999
Q ss_pred EEeecCcEEEEEEeecccCCccchhhh--hcceeeEeecCCeeeEEEcccceEEEecccccCCCce-EEEeecCeEEEEE
Q 016020 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA-FIFLYENQLFLTF 331 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~i~FiE~--~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsA-FiFly~~qLFLTf 331 (396)
|+..+|+.+..+..-++......|++- .+..+.....|+.++|||+.+++++.+..+|...+-. .-|.|++++.+|-
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred EECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence 999999998765433322222223321 1346788889999999999999999999999887765 5699999999998
Q ss_pred Ec-CeEEEEecc
Q 016020 332 RN-RTVAVWNFR 342 (396)
Q Consensus 332 s~-gti~iWd~~ 342 (396)
+. ++|+|||+.
T Consensus 345 S~D~TIklWd~~ 356 (356)
T 2w18_A 345 QKDGNIFVYHYS 356 (356)
T ss_dssp CTTSCEEEEEEC
T ss_pred ECCCcEEEecCC
Confidence 87 899999963
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-11 Score=103.61 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=121.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+.|.. ++ +||.. .|+++||||+++.+++..+.. ..|..++++|+-.+++.... +..++||++++|+.+..+
T Consensus 31 l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~--Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 31 VDWSS-GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp EEECT-TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEE
T ss_pred EEECC-CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC--CCcEEEeecCCceeEEEe
Confidence 66776 34 66654 599999999999998877653 56999999998877777766 567899999999999987
Q ss_pred EeecccCCccchhhhhcceeeEeecCCeeeEEEcccc-eEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~-ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
. .|+..+......+..|+....+..+.+|+..++ ..+.+..+|........|.++++++++-+. |+|.+||.+.
T Consensus 106 ~---~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 106 T---SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp E---CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred c---CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 7 667776666778889999999999999999985 555678889999999999999999998887 9999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-11 Score=112.68 Aligned_cols=263 Identities=11% Similarity=0.085 Sum_probs=172.5
Q ss_pred ceEEEee-ccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeE-------
Q 016020 90 KVIEIVA-ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR------- 161 (396)
Q Consensus 90 ~V~EIv~-a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr------- 161 (396)
.+..+.. ....+++-...|....||..+++.+..+.. +..-|.++-+ .. +++.| .|. .++.-
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~-~~---l~~~~---~dg--~i~~w~~~~~~~ 369 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITALTV-NP---LISGS---YDG--RIMEWSSSSMHQ 369 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECC-CSSCEEEEET-TT---TEEEE---TTS--CEEETTTTEEEC
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeC-CCCCEEEEEe-cC---cEEEC---CCC--eEEEEEchhhcC
Confidence 3333433 466778888899999999999998888865 4455666666 43 44433 111 11110
Q ss_pred ---------eee-hhhhhhCCCCCCCcceee---cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-C
Q 016020 162 ---------STK-IEYIRRGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K 227 (396)
Q Consensus 162 ---------~~~-~~~i~~gk~~~~~~LF~~---~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~ 227 (396)
+.+ -..|-.|-.+..-.++.. .....|--+.|.+ +|+.++.. .++.+++|++.+.+.+..+.. .
T Consensus 370 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 370 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEECSS
T ss_pred cccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecccCC
Confidence 000 000000000000011111 1122455566665 56666554 677778888878888887775 7
Q ss_pred ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 228 ~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
.+..+.++ |-+|+..... ...+++|++.+|+... ..+..+... +.|.+ .+++|++...|+.|+|||+.+++
T Consensus 448 ~~~~~~~~-~~~l~~~~~~--d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 448 PGSAVSLS-QNYVAVGLEE--GNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp CEEEEEEC-SSEEEEEETT--TSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred CceEEEEc-CCEEEEeecC--CCeEEEEECCCccccc--cccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCc
Confidence 89999999 6666555441 3568999999987654 222244444 77777 89999999999999999999999
Q ss_pred EEEeccc-ccCCCceEEEee----------cCeEEEEEEc-CeEEEEeccc--ceeeeeccccccCCC---CCCCcEEEc
Q 016020 305 LMEVSRT-EFMTPSAFIFLY----------ENQLFLTFRN-RTVAVWNFRG--ELVTSFEDHLLWHPD---CNTNNIYIT 367 (396)
Q Consensus 305 i~~v~~t-~~~~PsAFiFly----------~~qLFLTfs~-gti~iWd~~g--eL~t~fedh~l~~~~---c~~n~~~it 367 (396)
.+....+ |...+.+..|.+ +++++++.+. |+|.+||++. +++..+..|...... ++++. .+|
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEE
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEE
Confidence 9998887 999999999999 9999999886 8999999987 577788887543221 44444 444
Q ss_pred cCCc
Q 016020 368 SDQD 371 (396)
Q Consensus 368 ~~qd 371 (396)
...|
T Consensus 601 ~~~d 604 (615)
T 1pgu_A 601 SGAD 604 (615)
T ss_dssp EETT
T ss_pred ecCC
Confidence 4433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-11 Score=112.04 Aligned_cols=264 Identities=14% Similarity=0.129 Sum_probs=173.6
Q ss_pred ceEEEeeccc---hhhhhhccccceeeeccccceEEEecC---CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEee
Q 016020 90 KVIEIVAARD---IVFALAHSGVCAAFSRETNRRICFLNV---SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (396)
Q Consensus 90 ~V~EIv~a~d---ii~~L~~sG~c~af~~~t~~~ic~lN~---s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~ 163 (396)
.|..+-...+ ++++-...|....||..+++.+..+.. .+..-|.++-++ ....|++.+ .|. .++.-.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~--~i~~wd- 280 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG---ADA--TIRVWD- 280 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTS--EEEEEE-
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc---CCC--cEEEEE-
Confidence 5777766644 777788899999999999999999955 777888899888 666665543 222 222221
Q ss_pred ehhhhhhCCCCCCCcceeec---ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEE----
Q 016020 164 KIEYIRRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKI---- 234 (396)
Q Consensus 164 ~~~~i~~gk~~~~~~LF~~~---~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIki---- 234 (396)
++.|+.- .-|... .-..+--+.|. +|..++....|+.+++||+.+.+.+..+.+ ..|..+.+
T Consensus 281 ----~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~ 351 (615)
T 1pgu_A 281 ----VTTSKCV---QKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI 351 (615)
T ss_dssp ----TTTTEEE---EEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTE
T ss_pred ----CCCCcEE---EEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcE
Confidence 1222110 001100 00111223443 577788888899999999999888888765 44555544
Q ss_pred -----------------------------cCCeEEEEEecCCCeeeeEEEEe----------------------------
Q 016020 235 -----------------------------SPGIMLLIFNRSSSHVPLKILSI---------------------------- 257 (396)
Q Consensus 235 -----------------------------Spg~~Ll~~q~~~~~iplkIl~I---------------------------- 257 (396)
+++-+|+..... ..+++|++
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD---DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETT---TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCC---CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 323333222211 23444444
Q ss_pred ------ecCcEEEEEEeecccCCc---cchhhhhcceeeEeec-CCeeeEEEcccceEE-EecccccCCCceEEEeecCe
Q 016020 258 ------EDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE-NENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 258 ------etG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~ki~-~v~~t~~~~PsAFiFly~~q 326 (396)
.+|+.+..+. +... +.|. ++.|++... |+.|++||+.++++. .....+...+.+.-|.++++
T Consensus 429 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 501 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVR----LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 501 (615)
T ss_dssp EEEEETTTCCEEEEEE----CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred eEEEeccCCceeeecc----cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC
Confidence 4566665554 2223 4454 889999999 999999999999887 67788889999999999999
Q ss_pred EEEEEEc-CeEEEEeccc-ceeeeecc-ccccCC---CCC----------CCcEEEccCCcEEEEeccC
Q 016020 327 LFLTFRN-RTVAVWNFRG-ELVTSFED-HLLWHP---DCN----------TNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~g-eL~t~fed-h~l~~~---~c~----------~n~~~it~~qd~ii~~~~~ 379 (396)
++++-+. |+|.+||++. +++..+.. |.-... ..| ++.+++|...|=-|.-...
T Consensus 502 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 9998876 9999999965 78777776 543322 155 7778887776643333333
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-11 Score=126.07 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=131.9
Q ss_pred CCCe---EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 187 WPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 187 ~Pgf---VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
|.+- +.|++ +|+.++..+.|+.++|||+.+.+.+.++.+ ..|..+.+||+--+++.... +..++|||+.+|+
T Consensus 614 h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 614 HTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA--DKKVKIWDSATGK 690 (1249)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCC
T ss_pred ccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC--CCeEEEEECCCCc
Confidence 4554 47888 899999999999999999999999999986 88999999987766666655 4569999999999
Q ss_pred EEEEEEeecccCCc---cchhhh-hcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 262 VLKVFYHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 262 ~l~s~~~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
.+..+. .|... +.|.+. .+..++....|+.+++||+.++++..+..+|...+.+..|.+++++++|.+. |+|
T Consensus 691 ~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 691 LVHTYD---EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp EEEEEE---CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred eEEEEc---CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 999887 55555 667663 2336778899999999999999999999999999999999999999999887 999
Q ss_pred EEEeccc-ceeeee
Q 016020 337 AVWNFRG-ELVTSF 349 (396)
Q Consensus 337 ~iWd~~g-eL~t~f 349 (396)
.+||++. +....+
T Consensus 768 ~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 768 RLWDVRSANERKSI 781 (1249)
T ss_dssp EEEEGGGTEEEEEE
T ss_pred EEEeCCCCccccee
Confidence 9999987 444333
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-11 Score=121.68 Aligned_cols=181 Identities=12% Similarity=0.107 Sum_probs=138.9
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEec--cCceEEEEEcCCeEEEEEecCCC--eeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs--~~~VqEIkiSpg~~Ll~~q~~~~--~iplkIl~IetG~~l~ 264 (396)
+.|.+ +|+.||..+.|+++||||+.+.+ .+..+. ...|..+.|||+--.++...... ...+.+|+ +|+.+.
T Consensus 65 ~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~ 141 (611)
T 1nr0_A 65 AKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG 141 (611)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB
T ss_pred EEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc
Confidence 67887 89999999999999999997654 444554 37899999998766655554432 35677776 677766
Q ss_pred EEEeecccCCc---cchhhhhcc-eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 265 VFYHLLHRNKK---VDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~~e-kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
.+. .|+.. ++|.+ .+. .|+...+|+.+++||+.++++..+..+|...+.+.-|.+++++++|-+. |+|.+|
T Consensus 142 ~l~---gh~~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 142 NLT---GQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp CCC---CCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eec---CCCCCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEE
Confidence 554 66655 77877 454 5999999999999999999999999999999999999999999999887 999999
Q ss_pred ecc-cceeeeec-------cccccC---CCCCCCcEEEccCCcEEEEecc
Q 016020 340 NFR-GELVTSFE-------DHLLWH---PDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 340 d~~-geL~t~fe-------dh~l~~---~~c~~n~~~it~~qd~ii~~~~ 378 (396)
|.. |+.+..++ .|.-+. ..+|+++.++|+..|=-|--..
T Consensus 218 d~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267 (611)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 975 47777774 353322 2267888888877774444443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=130.47 Aligned_cols=181 Identities=15% Similarity=0.187 Sum_probs=139.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
-+.|++ +|+.||....|+.+||||..+.+.+....+ ..|..++||||-.| +.... +-.++|||+++|+.+..+.
T Consensus 22 ~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L-~S~s~--D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 22 AAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYL-VVINA--KDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EEEEET-TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEE-EEEET--TCEEEEEETTTCSEEEEEE-
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEE-EEEEC--cCeEEEEECCCCcEEEEEc-
Confidence 468998 899999999999999999999998888765 67999999998844 44444 5789999999999998886
Q ss_pred ecccC--CccchhhhhcceeeEeecCCeeeEEEcccceEE-----------EecccccCCCceEEEeec-CeEEEEEEc-
Q 016020 269 LLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELM-----------EVSRTEFMTPSAFIFLYE-NQLFLTFRN- 333 (396)
Q Consensus 269 ~L~~s--k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~-----------~v~~t~~~~PsAFiFly~-~qLFLTfs~- 333 (396)
++. .-+.|.+ .+++|++..+|+.+++||+.++++. ..+..|..++.+.-|.++ +.++++-++
T Consensus 97 --~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 97 --VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp --CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred --CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 332 2378887 8999999999999999999999875 234667888999999995 345555444
Q ss_pred CeEEEEeccc-ceeeeeccccc---------------------cCCCCCCCcEEEccCCcEEEEeccC
Q 016020 334 RTVAVWNFRG-ELVTSFEDHLL---------------------WHPDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fedh~l---------------------~~~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
|+| +||++. +.+..|+.|.+ -....|++++++|...|=-|.-...
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 999 999988 56667776621 1112567888888777644444443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=112.64 Aligned_cols=171 Identities=11% Similarity=0.121 Sum_probs=129.6
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEE---------EeecCcEEEEEE
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKIL---------SIEDGTVLKVFY 267 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl---------~IetG~~l~s~~ 267 (396)
.+..++..+.|+.++|||+++.+.+..+....|..+.++|. ++.... +..+++| ++++++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~--D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGP--CNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECS--TTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecC--CCeEEEEEccCceEEeecCCcceeEEee
Confidence 36788889999999999999999999998888888888888 444444 3445555 556777676655
Q ss_pred eecccCCc---cchhhh-hcceeeEeecCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEEEEEE-cCeEEEEec
Q 016020 268 HLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (396)
Q Consensus 268 ~~L~~sk~---i~FiE~-~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLFLTfs-~gti~iWd~ 341 (396)
+.+..+ +.|.+. .+++|+....|+.+++||+.+++...+.. .+.....+.-|.++++++.+-+ +|+|.+||+
T Consensus 122 --~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 122 --VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp --CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred --cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 345444 566552 57788999999999999999999987653 4455788999999999999855 599999999
Q ss_pred cc-cee-eeecc-ccccCCC---CCCCcEEEccCCcEEE
Q 016020 342 RG-ELV-TSFED-HLLWHPD---CNTNNIYITSDQDLII 374 (396)
Q Consensus 342 ~g-eL~-t~fed-h~l~~~~---c~~n~~~it~~qd~ii 374 (396)
+. +.+ ..|+. |.-+... ++++.+.+++..|-|.
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 88 555 67887 7654332 7788888887777433
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-10 Score=107.50 Aligned_cols=241 Identities=11% Similarity=0.112 Sum_probs=161.3
Q ss_pred ceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 90 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
.|.-+-+. ..+++.-...|....||..+++.+..+.. +...|.++-+|. .-|.+ ...|. .++. . +
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v~~~s~~~--~~l~s---gs~d~--~i~~--~---d 215 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNS--YILSS---GSRSG--HIHH--H---D 215 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEE---EETTS--EEEE--E---E
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCceEEEeeCC--CEEEE---EeCCC--ceeE--e---e
Confidence 46655554 34677777889999999999999988865 445566777763 32222 22222 1111 1 1
Q ss_pred hhhCCCCCCCccee-ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce----EEEEec--cCceEEEEEcCC-eE
Q 016020 168 IRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKHVQEIKISPG-IM 239 (396)
Q Consensus 168 i~~gk~~~~~~LF~-~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs----~lysIs--~~~VqEIkiSpg-~~ 239 (396)
.+.+. ..+-. ...-...-.+.+.+ +|+.++....|+.++|||+.+.+ .+.... ...|..+.++|. ..
T Consensus 216 ~~~~~----~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 216 VRVAE----HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp TTSSS----CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTT
T ss_pred ecccc----eeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCccc
Confidence 11110 00100 01111122344555 79999999999999999998765 233333 367999999973 34
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc--cchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCC
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMT 315 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~--i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~ 315 (396)
+++......+..++|||+.+|+.+..+. ++..- +.|.. .+..|++.. .|+.|+|||+.+++++.+..+|...
T Consensus 291 ~la~~~gs~D~~I~iwd~~t~~~~~~~~---~~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~ 366 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 366 (420)
T ss_dssp EEEEEECTTTCEEEEEETTTTEEEEEEE---CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC
T ss_pred EEEEEeecCCCEEEEEeCCccccceeec---cccceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC
Confidence 4444444456789999999999999877 33222 56666 666777654 7899999999999999999999999
Q ss_pred CceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 316 PSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 316 PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
+.+.-|.+++++++|-+. |+|+|||+.. +-....|.+
T Consensus 367 V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 367 VLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 999999999999999987 9999999865 444444544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=121.73 Aligned_cols=262 Identities=15% Similarity=0.211 Sum_probs=191.0
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
...|.-+-+. ..+++.-...|....||..|++.+..+. .+..-|.++=++..+..|++.| .|. . .+.-
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---~d~--~--v~vw-- 684 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---ADK--K--VKIW-- 684 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--E--EEEE--
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEe---CCC--e--EEEE--
Confidence 3445555544 3356666778999999999999999887 4566778888888777666643 232 2 2222
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeE
Q 016020 166 EYIRRGKPDSGFALFESESLKWPG---FVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM 239 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~Pg---fVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~ 239 (396)
++..|+ ++..-. .|++ -+.|.+. ++.+++..+.|+.++|||+.+.+.+..+.+ ..|..+.++|+-.
T Consensus 685 -d~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 685 -DSATGK-----LVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp -ETTTCC-----EEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred -ECCCCc-----eEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 222232 222110 1222 3456554 677899999999999999999999999876 7899999998776
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeec---c----------cCCccchhhhhcceeeEeecCCeeeEEEcccceEE
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLL---H----------RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L---~----------~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~ 306 (396)
.++.... +..+++|++.+|+....+...- . .-..+.|.+ .+..|++.. ++.+.+||+.+++..
T Consensus 757 ~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~-~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 757 LLASCSA--DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAA-KNKVLLFDIHTSGLL 832 (1249)
T ss_dssp EEEEEES--SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT-TSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred EEEEEEC--CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCce
Confidence 6666665 4679999999999998876211 0 112367777 788888887 678999999998877
Q ss_pred Eec-ccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEccCCc
Q 016020 307 EVS-RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQD 371 (396)
Q Consensus 307 ~v~-~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd 371 (396)
... ..+...+.+..|.+++.++++-+. |+|.+||++. ..+..+..|.-+... +++++.++|...|
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 744 488889999999999999888877 9999999998 677888888665432 6777777777666
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-11 Score=111.66 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=119.3
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
-+.|.+.+|..|+..+.|+++||||+++......... ..+..+.++|+-.+++.... ...++|||+. |+.+..
T Consensus 169 ~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~~wd~~-~~~~~~ 245 (435)
T 4e54_B 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN--VGNVILLNMD-GKELWN 245 (435)
T ss_dssp EEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS--SSBEEEEESS-SCBCCC
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC--CCcEeeeccC-cceeEE
Confidence 4689988899999999999999999998764433332 34678899987766666655 4568999985 555554
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEEEEEc-CeEEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAV 338 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFLTfs~-gti~i 338 (396)
+. .|... +.|.+.-...|+....|+.++|||+++.+... ...+|.....+.-|.+++++++|-+. |+|.|
T Consensus 246 ~~---~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~i 322 (435)
T 4e54_B 246 LR---MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322 (435)
T ss_dssp SB---CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEE
T ss_pred Ee---cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEE
Confidence 44 45555 67877444467788999999999999876443 33567778888899999999988887 99999
Q ss_pred Eeccc-ceeeeecccc
Q 016020 339 WNFRG-ELVTSFEDHL 353 (396)
Q Consensus 339 Wd~~g-eL~t~fedh~ 353 (396)
||++. +....+..|.
T Consensus 323 wd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 323 YSASQWDCPLGLIPHP 338 (435)
T ss_dssp EESSSSSSEEEECCCC
T ss_pred EECCCCccceEEeccc
Confidence 99976 6666666554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=116.78 Aligned_cols=177 Identities=9% Similarity=0.047 Sum_probs=126.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceE--EEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~--lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
+.|.+.++.+||..+.|+.++|||+.+.+. +....+ ..|..|+|+| +-.+|+.... +..++|||++++.....
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~--D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM--EGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS--SSCEEEEETTSCEEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC--CCEEEEeeccCCceeEE
Confidence 688888899999999999999999987763 444433 7899999996 3333455544 46789999987654332
Q ss_pred EEeecccCC-----ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEEc-CeEEE
Q 016020 266 FYHLLHRNK-----KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAV 338 (396)
Q Consensus 266 ~~~~L~~sk-----~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~i 338 (396)
.. ++.. .++|.+ .+.+|++...|+.|++||+..+ .+.....|.....+.-|.++++ ++++-+. |+|.+
T Consensus 203 ~~---~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i 277 (435)
T 4e54_B 203 AS---SDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277 (435)
T ss_dssp EC---CSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE
T ss_pred ec---cCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcceeeE
Confidence 22 2221 266766 7899999999999999998654 4556778889999999998876 6667665 99999
Q ss_pred Eeccc-ceee---eecccccc---CCCCCCCcEEEccCCcEEE
Q 016020 339 WNFRG-ELVT---SFEDHLLW---HPDCNTNNIYITSDQDLII 374 (396)
Q Consensus 339 Wd~~g-eL~t---~fedh~l~---~~~c~~n~~~it~~qd~ii 374 (396)
||++. +... ....|.-+ ...+++++.++|...|=-|
T Consensus 278 wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i 320 (435)
T 4e54_B 278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEI 320 (435)
T ss_dssp EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred EecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEE
Confidence 99876 3222 22344332 2336788888887776433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-11 Score=103.37 Aligned_cols=151 Identities=11% Similarity=0.179 Sum_probs=117.7
Q ss_pred eEEeeCC-CCcEEEeecCCCeEEEEeccCc---------eEEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEE
Q 016020 190 FVEFDDV-NGKVLTYSAQDSIYKVFDLKNY---------TMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 190 fVEFDd~-NgkIlt~~a~d~~YrVwdlknY---------s~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl 255 (396)
-+.|.+. +|..++..+.|+.++|||+.+. +.+..+.+ ..|..++++|+ -.+++.... ...++||
T Consensus 62 ~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw 139 (351)
T 3f3f_A 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN--DGILRLY 139 (351)
T ss_dssp EEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TCEEEEE
T ss_pred EEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC--CCcEEEe
Confidence 3577775 5889999999999999999987 66777765 78999999985 443444443 4678999
Q ss_pred EeecCcEEEE---------------------------------------------------------EEeecccCCc---
Q 016020 256 SIEDGTVLKV---------------------------------------------------------FYHLLHRNKK--- 275 (396)
Q Consensus 256 ~IetG~~l~s---------------------------------------------------------~~~~L~~sk~--- 275 (396)
|+.+++.+.. ...+-.|...
T Consensus 140 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 219 (351)
T 3f3f_A 140 DALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRS 219 (351)
T ss_dssp ECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEE
T ss_pred cCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeE
Confidence 9988764321 1111123333
Q ss_pred cchhhhhc----ceeeEeecCCeeeEEEcccc----------------------------------------------eE
Q 016020 276 VDFIEQFN----EKLLVKQENENLQILDVRNA----------------------------------------------EL 305 (396)
Q Consensus 276 i~FiE~~~----ekLLIKQed~~L~I~Dv~~~----------------------------------------------ki 305 (396)
+.|.+ .+ .+|+....|+.|++||+.++ ++
T Consensus 220 ~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 220 ISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEECC-CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 67777 44 78999999999999999986 67
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
+.....|...+.+.-|.+++++++|-+. |+|.+||+..
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 7778889999999999999999999986 9999999985
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=110.01 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=132.7
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceE-------EEEe--ccCceEEEEEcC-CeEEEEEecCCCeeeeEEEEe
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~-------lysI--s~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~I 257 (396)
+-.+.|++.+...++....|+.++|||+.+... ...+ ....|.+|.++| +-.+++.... .-.++|||+
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~--dg~i~i~d~ 261 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD--DQKLMIWDT 261 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET--TSEEEEEET
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC--CCeEEEEEC
Confidence 346889884443888889999999999998421 2233 336799999998 5555555544 467999999
Q ss_pred ecC---cEEEEEEeecccCCc---cchhhhhcc-eeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCe-EE
Q 016020 258 EDG---TVLKVFYHLLHRNKK---VDFIEQFNE-KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ-LF 328 (396)
Q Consensus 258 etG---~~l~s~~~~L~~sk~---i~FiE~~~e-kLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~q-LF 328 (396)
.++ +.+..+. .+... +.|.+ .++ .|++...|+.|++||+++ ++.+.....|...+.+..|.++++ ++
T Consensus 262 ~~~~~~~~~~~~~---~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 262 RNNNTSKPSHTVD---AHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp TCSCSSSCSEEEE---CCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred CCCCCCcceeEee---cCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 998 4565554 45444 78887 555 577999999999999998 666777778889999999999884 67
Q ss_pred EEEEc-CeEEEEeccc---------------ceeeeeccccccCCC---CCCCc-EEEccCCcEEEEe
Q 016020 329 LTFRN-RTVAVWNFRG---------------ELVTSFEDHLLWHPD---CNTNN-IYITSDQDLIISY 376 (396)
Q Consensus 329 LTfs~-gti~iWd~~g---------------eL~t~fedh~l~~~~---c~~n~-~~it~~qd~ii~~ 376 (396)
++-+. |+|.|||++. +++..+..|--+... ++++. +++|...|=.|..
T Consensus 338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 77765 9999999987 677777766432221 55565 6666655544433
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-10 Score=102.95 Aligned_cols=233 Identities=10% Similarity=0.140 Sum_probs=161.4
Q ss_pred ceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 90 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
.|..+... ..+++.-...|...+||..+++.+..+. .+...+.++-++..+..+++++ ..|. . .+..+.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~~~~--~--i~~~d~-- 241 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSN--WISE--D--ISVIDR-- 241 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEE--TTTT--E--EEEEET--
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEe--cCCC--c--EEEEEC--
Confidence 45444443 3455555667889999999999888876 4556788899998777665532 1122 2 222322
Q ss_pred hhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeec--------CCCeEEEEeccCceEEEEecc-CceEEEEEcCCe
Q 016020 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA--------QDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI 238 (396)
Q Consensus 168 i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a--------~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~ 238 (396)
+.|+ ++..-..-..|..+.|++ +|+.++... .|+.+++||+.+.+.+..+.. ..+..+.++|+-
T Consensus 242 -~~~~-----~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 314 (433)
T 3bws_A 242 -KTKL-----EIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE 314 (433)
T ss_dssp -TTTE-----EEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred -CCCc-----EEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence 2222 121111123477888998 555444444 588999999999998888754 578899999765
Q ss_pred -EEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecC---------------CeeeEEEccc
Q 016020 239 -MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---------------ENLQILDVRN 302 (396)
Q Consensus 239 -~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed---------------~~L~I~Dv~~ 302 (396)
.+++.... .-.+.+|++++|+.+..+.+. ..-..+.|.+ .+.+|++...+ +.|.+||+.+
T Consensus 315 ~~l~~~~~~--~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 315 NKIYVSDMC--CSKIEVYDLKEKKVQKSIPVF-DKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TEEEEEETT--TTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CEEEEEecC--CCEEEEEECCCCcEEEEecCC-CCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 55565554 347899999999998877621 1122377777 78889988764 5899999999
Q ss_pred ceEEEecccccCCCceEEEeecCeEEEEEE--cCeEEEEeccc
Q 016020 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRG 343 (396)
Q Consensus 303 ~ki~~v~~t~~~~PsAFiFly~~qLFLTfs--~gti~iWd~~g 343 (396)
++.+..... ...|.++.|.++++.+++.. +++|.+|++++
T Consensus 391 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 391 DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999887666 45789999999998766654 69999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-09 Score=93.35 Aligned_cols=176 Identities=10% Similarity=0.215 Sum_probs=128.8
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCc---eEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknY---s~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
-+.|++ +|+.++..+.|+.+++|++.+. +.+..+.+ ..|..+.+.++.++ .... ...+++|+ +++.+.
T Consensus 64 ~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~~~---d~~i~~~d--~~~~~~ 136 (313)
T 3odt_A 64 SVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI-SGSW---DKTAKVWK--EGSLVY 136 (313)
T ss_dssp EEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE-EEET---TSEEEEEE--TTEEEE
T ss_pred EEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE-EEeC---CCCEEEEc--CCcEEE
Confidence 467888 8899999999999999999876 45666654 88999999766443 3332 35689999 888877
Q ss_pred EEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccc-ccCCCceEEEeecCeEEEEEEcCeEEEEe
Q 016020 265 VFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t-~~~~PsAFiFly~~qLFLTfs~gti~iWd 340 (396)
.+. .+... +.|.+..+++|++...|+.|++|| .++....... +...+.+..|.++++++..-.+|+|.+||
T Consensus 137 ~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d 211 (313)
T 3odt_A 137 NLQ---AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211 (313)
T ss_dssp EEE---CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ecc---cCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEE
Confidence 776 44444 678887899999999999999999 4444554444 88889999999999955555559999999
Q ss_pred ccc-ceeeeeccccccCCC---CCCCcEEEccCCcEEEEecc
Q 016020 341 FRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 341 ~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~ 378 (396)
++. +++..+..|...... .+++. +++...|=.|....
T Consensus 212 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd 252 (313)
T 3odt_A 212 MHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWS 252 (313)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEEC
T ss_pred CCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEE
Confidence 985 788888877543221 45553 55555554444443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-10 Score=102.93 Aligned_cols=236 Identities=11% Similarity=0.097 Sum_probs=160.2
Q ss_pred chhhhhhccccceeeeccccceEEEecC----CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNV----SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~----s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~ 174 (396)
.++++-...|....||..+|+.+..+.. .+...|.++-++..+. ++. +. +.+ ..++.-. +..
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~-s~--~~d-~~v~~~d-----~~~---- 200 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWV-SQ--MQA-NAVHVFD-----LKT---- 200 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEE-EE--GGG-TEEEEEE-----TTT----
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEE-EE--CCC-CEEEEEE-----CCC----
Confidence 3455555667788999998988865443 4566788888865443 333 22 122 2222222 122
Q ss_pred CCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCe-EEEEEecCC----
Q 016020 175 SGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSS---- 247 (396)
Q Consensus 175 ~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~---- 247 (396)
+.++..- ..-..|..+.|++.+..+++.+..++.+++||+++.+.+..+.. ..+..+.++|+- .|++.....
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 201 -LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp -CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred -ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence 2222211 22346778899995555657777899999999999999998876 679999999764 444443322
Q ss_pred -CeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecC
Q 016020 248 -SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 248 -~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
..-.+++||+.+|+.+..+.+. ..-..+.|.+ .+++|++- ..++.+++||+.++++..... +...|.+..|.+++
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg 356 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTIGPP-GNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG 356 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEE-ECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred cCCCeEEEEECCCCcEEeeccCC-CCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence 2458999999999988876532 2223477777 67667655 789999999999999887654 56778999999998
Q ss_pred eEEEEEEc----------------CeEEEEeccc-ceeeeeccc
Q 016020 326 QLFLTFRN----------------RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 326 qLFLTfs~----------------gti~iWd~~g-eL~t~fedh 352 (396)
+.+++... |.|.+||... +++..++.+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~ 400 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG 400 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC
Confidence 75444443 5999999965 777777654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-11 Score=112.37 Aligned_cols=242 Identities=13% Similarity=0.151 Sum_probs=167.3
Q ss_pred ccceEEEeecc---chhhhhhccccceeeeccc----------cceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCC
Q 016020 88 RTKVIEIVAAR---DIVFALAHSGVCAAFSRET----------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 154 (396)
Q Consensus 88 RS~V~EIv~a~---dii~~L~~sG~c~af~~~t----------~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~ 154 (396)
...|.-|-+.. .++++-...|...+|+..+ .+.+..+.....+ |.+|=++..+..++.++ ..|.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~--~~dg 204 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE-GYGLSWNPNLNGYLLSA--SDDH 204 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC-CCCEEECTTSTTEEEEE--CTTS
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC-eEEEEeCCCCCCeEEEE--eCCC
Confidence 34455555542 4677777889999999877 5667777655444 56677776666344422 2232
Q ss_pred CceeeeEeeehhhhhhCCCCCCCccee--ecccCC---CCeEEeeCCCCcEEEeecCCCeEEEEeccCc---eEEEEec-
Q 016020 155 FSSLKCRSTKIEYIRRGKPDSGFALFE--SESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS- 225 (396)
Q Consensus 155 ~s~L~cr~~~~~~i~~gk~~~~~~LF~--~~~l~~---PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY---s~lysIs- 225 (396)
.++..+++ .++. +..... .....| .--+.|++.++.+++..+.|+.+++||+++. +.+..+.
T Consensus 205 ----~i~vwd~~---~~~~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 205 ----TICLWDIN---ATPK--EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp ----CEEEEETT---SCCB--GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred ----eEEEEeCC---CCCC--CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 22333222 2111 000100 001123 2347788888999999999999999999987 4555554
Q ss_pred -cCceEEEEEcCCe-EEEEEecCCCeeeeEEEEeec-CcEEEEEEeecccCCc---cchhhhhcc-eeeEeecCCeeeEE
Q 016020 226 -DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKK---VDFIEQFNE-KLLVKQENENLQIL 298 (396)
Q Consensus 226 -~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~Iet-G~~l~s~~~~L~~sk~---i~FiE~~~e-kLLIKQed~~L~I~ 298 (396)
...|..|.++|.- .+++.... ...++|||+.+ ++.+..+. .|... ++|.+ .++ .|++...|+.|+||
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~--dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp-~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSA--DKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSP-HNETILASSGTDRRLHVW 349 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECS-SCTTEEEEEETTSCCEEE
T ss_pred CCCCeEEEEeCCCCCCEEEEEeC--CCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECC-CCCCEEEEEeCCCcEEEE
Confidence 3789999999854 35555555 35699999998 56677776 34444 78887 554 58888899999999
Q ss_pred Eccc--------------ceEEEecccccCCCceEEEeecCe-EEEEEEc-CeEEEEecccceee
Q 016020 299 DVRN--------------AELMEVSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRGELVT 347 (396)
Q Consensus 299 Dv~~--------------~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~geL~t 347 (396)
|+.+ .+++.+..+|...+.++.|.++++ ++++.+. |+|.||+++..+..
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 9998 478888889999999999999999 8888887 99999999886554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-10 Score=109.27 Aligned_cols=205 Identities=12% Similarity=0.089 Sum_probs=141.4
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-cccCCCCeEEeeCCCCcEEEeecCCCe
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~-~~l~~PgfVEFDd~NgkIlt~~a~d~~ 209 (396)
-|.++=++..+..|+.++ ..|. .++.-.+... .|+ ....+.. ..-..+--+.|++ +|+.|+....++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~--~~dg--~v~iwd~~~~---~~~---~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACA--DSDK--SLLVFDVDKT---SKN---VLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGD 172 (450)
T ss_dssp CEEEEEECTTSSEEEEEE--GGGT--EEEEEEECSS---SSS---CEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred ceEEEEEcCCCCEEEEEE--CCCC--eEEEEECcCC---CCc---eeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCc
Confidence 488998888777664422 2232 2333222100 111 1112221 1123345789998 7888888888999
Q ss_pred EEEEeccCceEEE----Ee--ccCceEEEEEcCC---eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cc
Q 016020 210 YKVFDLKNYTMLY----SI--SDKHVQEIKISPG---IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VD 277 (396)
Q Consensus 210 YrVwdlknYs~ly----sI--s~~~VqEIkiSpg---~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~ 277 (396)
+++||+.+.+... .+ ....|..+.++|+ -.+++.... ...++||++.+|+.+..+. ..|... +.
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~ 248 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--DEHIKISHYPQCFIVDKWL--FGHKHFVSSIC 248 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--TSCEEEEEESCTTCEEEEC--CCCSSCEEEEE
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--CCcEEEEECCCCceeeeee--cCCCCceEEEE
Confidence 9999999887432 33 3378999999997 555555555 4678999999999887643 245444 78
Q ss_pred hhhhhcceeeEeecCCeeeEEEcccceEEEeccc-------------------------ccCCCceEEEeecCeEEEEEE
Q 016020 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-------------------------EFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 278 FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t-------------------------~~~~PsAFiFly~~qLFLTfs 332 (396)
|. .+.+|+....|+.|++||+.+++++..... ....+.+..|.++++++++.+
T Consensus 249 ~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 249 CG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp EC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred EC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 88 899999999999999999999998776542 235567888999998888876
Q ss_pred --cCeEEEEec--c-c---ceeeeeccc
Q 016020 333 --NRTVAVWNF--R-G---ELVTSFEDH 352 (396)
Q Consensus 333 --~gti~iWd~--~-g---eL~t~fedh 352 (396)
+++|.+||+ . + +++..+..|
T Consensus 327 ~~d~~i~iw~~~~~~~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKGDLALKQIITFP 354 (450)
T ss_dssp TTCSEEEEEEECSSSTTCEEEEEEEECS
T ss_pred CCCCeEEEEEeccCCCCceeeccEeccC
Confidence 499999999 3 3 455566655
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=105.51 Aligned_cols=258 Identities=12% Similarity=0.139 Sum_probs=175.7
Q ss_pred hhhhccccceeeeccccceEEEecC-CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 016020 102 FALAHSGVCAAFSRETNRRICFLNV-SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (396)
Q Consensus 102 ~~L~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 180 (396)
+|.+--|....||..||+.+-.+.. .+..-|.||=++....-|++.| .|. .++.- ++..| .++.
T Consensus 119 lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs---~Dg--~v~iW-----d~~~~-----~~~~ 183 (420)
T 4gga_A 119 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---SSA--EVQLW-----DVQQQ-----KRLR 183 (420)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---TTS--CEEEE-----ETTTT-----EEEE
T ss_pred EEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE---CCC--eEEEE-----EcCCC-----cEEE
Confidence 3444567889999999998877764 4567899999998777666533 232 22222 12222 2222
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
.- -.|.+-+---..|+.+++..+.|+.+++||..... .+..+.+ ..+..+.++|.-..++.... +-.++||++
T Consensus 184 ~~--~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~--D~~v~i~~~ 259 (420)
T 4gga_A 184 NM--TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN--DNLVNVWPS 259 (420)
T ss_dssp EE--CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCEEEEES
T ss_pred EE--eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec--cccceEEee
Confidence 11 12333332222368899999999999999998755 4555554 88999999987776666665 567899999
Q ss_pred ecCcEEEE-EEeecccCCc---cchhhhhcceeeE--eecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 258 EDGTVLKV-FYHLLHRNKK---VDFIEQFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 258 etG~~l~s-~~~~L~~sk~---i~FiE~~~ekLLI--KQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
.+|+.... +.....+... +.|.+.....+++ +..|+.|++||+.++++.....++ ..+.+..|.++++.+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEE
Confidence 99875432 1111233333 6777755555554 458999999999999999877665 467788888888777766
Q ss_pred E---cCeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEccCCcEEEEeccC
Q 016020 332 R---NRTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 332 s---~gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~~qd~ii~~~~~ 379 (396)
+ +|+|.|||... +++..|.+|.-.+.. .|++++++|+..|=-|-.-+.
T Consensus 339 sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred EecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 4 59999999976 899999998655432 678888888777755554443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.1e-11 Score=111.99 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=123.6
Q ss_pred eEEeeCCCCcEE-EeecCCCeEEEEecc--CceEEEEec----cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 190 FVEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 190 fVEFDd~NgkIl-t~~a~d~~YrVwdlk--nYs~lysIs----~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-+.|++ +|+.| +..+.|+.++|||+. +.+.+..+. ...|..+.++|+-..|+.... ..-+.+|++.+++.
T Consensus 107 ~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 107 NLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK--FGDVYSIDINSIPE 183 (450)
T ss_dssp EEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET--TSEEEEEETTSCCC
T ss_pred EEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC--CCcEEEEecCCccc
Confidence 467888 67765 778889999999999 888888875 278999999987655555544 45579999999886
Q ss_pred EE-EEEeecccCCc---cchhhhh---cceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-
Q 016020 263 LK-VFYHLLHRNKK---VDFIEQF---NEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 263 l~-s~~~~L~~sk~---i~FiE~~---~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
.. ....+..|... +.|.+ . +.+|+....|+.|+|||+.+++++.. ..+|...+.+..|. +++++++-+.
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 54 11122245444 67777 5 77999999999999999999988776 77888999999999 9999888886
Q ss_pred CeEEEEeccc-ceeeeecc
Q 016020 334 RTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 334 gti~iWd~~g-eL~t~fed 351 (396)
++|.+||++. +++..+.-
T Consensus 262 ~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEeeeecc
Confidence 8999999886 66666653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-09 Score=113.07 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=141.4
Q ss_pred eEEeeCC-CCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcE
Q 016020 190 FVEFDDV-NGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 190 fVEFDd~-NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-+.|.+. +|..++..+.|+.++|||+.+.+ .+..+.. ..|..+.++|+ -.+++.... ...++||++.+++.
T Consensus 58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~--dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKVSVVEFKENGT 135 (753)
T ss_dssp EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TSEEEEEECCSSSC
T ss_pred EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC--CCcEEEEEeecCCC
Confidence 3567653 48899999999999999999987 6666654 88999999985 333444444 46899999999955
Q ss_pred EEEEEeecccCCc---cchhhh------------hcceeeEeecCCeeeEEEcccc----eEEEecccccCCCceEEEee
Q 016020 263 LKVFYHLLHRNKK---VDFIEQ------------FNEKLLVKQENENLQILDVRNA----ELMEVSRTEFMTPSAFIFLY 323 (396)
Q Consensus 263 l~s~~~~L~~sk~---i~FiE~------------~~ekLLIKQed~~L~I~Dv~~~----ki~~v~~t~~~~PsAFiFly 323 (396)
....... .+... +.|.+. .+.+|++...|+.|++||+.++ ++......|...+.+..|.+
T Consensus 136 ~~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 136 TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp CCCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred cceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence 4433322 33333 667664 5899999999999999999987 66777788999999999999
Q ss_pred c---CeEEEEEEc-CeEEEEecccc------eeeeeccccccC---CCCCCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 324 E---NQLFLTFRN-RTVAVWNFRGE------LVTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 324 ~---~qLFLTfs~-gti~iWd~~ge------L~t~fedh~l~~---~~c~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
+ ++++++.+. |+|.+||.+.. .......|.-+. ...+++++++|+..|=-|...+......|
T Consensus 215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 9 899988886 89999999873 222222233222 22577888888777766666666544444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=101.31 Aligned_cols=230 Identities=15% Similarity=0.038 Sum_probs=150.1
Q ss_pred CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCc-EEEee
Q 016020 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK-VLTYS 204 (396)
Q Consensus 126 ~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~Ngk-Ilt~~ 204 (396)
..+.+.|.++-++....-|++.| .| ..++.-.+. .++... .+......-...--+.|++ +|+ .++..
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~---~d--~~v~iw~~~-----~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 75 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITS---WD--GSLTVYKFD-----IQAKNV-DLLQSLRYKHPLLCCNFID-NTDLQIYVG 75 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEE---TT--SEEEEEEEE-----TTTTEE-EEEEEEECSSCEEEEEEEE-SSSEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEc---CC--CeEEEEEeC-----CCCccc-cceeeeecCCceEEEEECC-CCCcEEEEE
Confidence 35667888888887666565533 22 234333332 111000 0111111112233577887 688 88888
Q ss_pred cCCCeEEEEec-cCceEEEEec----cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeec---------CcEEEEEEeec
Q 016020 205 AQDSIYKVFDL-KNYTMLYSIS----DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIED---------GTVLKVFYHLL 270 (396)
Q Consensus 205 a~d~~YrVwdl-knYs~lysIs----~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet---------G~~l~s~~~~L 270 (396)
..|+.+++||+ .+.+. ..+. ...|..+.++|+-+|+... . ...+++|++.+ ++.+..+.
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~--- 148 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAAS-W--DGLIEVIDPRNYGDGVIAVKNLNSNNTK--- 148 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEE-T--TSEEEEECHHHHTTBCEEEEESCSSSSS---
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEc-C--CCeEEEEcccccccccccccCCeeeEEe---
Confidence 89999999999 77764 4443 3789999999965554443 3 46789999998 77665443
Q ss_pred ccCCc---cchhhhhcceeeEeecCCeeeEEEccc-ce--EEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEecc
Q 016020 271 HRNKK---VDFIEQFNEKLLVKQENENLQILDVRN-AE--LMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 271 ~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~-~k--i~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd~~ 342 (396)
+... ++|. .+.|++...++.|++||+.+ ++ .......+...+.+..|.+ +++++++-+. |.|.+||++
T Consensus 149 -~~~~v~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 -VKNKIFTMDTN---SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp -SCCCEEEEEEC---SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred -eCCceEEEEec---CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 3333 5554 44599999999999999998 43 4455667788899999999 8888888887 899999987
Q ss_pred c-------ceeeeeccccc---------cC---CCCCCCcEEEccCCcEEEEecc
Q 016020 343 G-------ELVTSFEDHLL---------WH---PDCNTNNIYITSDQDLIISYCK 378 (396)
Q Consensus 343 g-------eL~t~fedh~l---------~~---~~c~~n~~~it~~qd~ii~~~~ 378 (396)
. +.+..|..|.. +. ...+++++++|...|=-|...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 5 45667777743 11 1255667667666664333333
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-10 Score=118.88 Aligned_cols=186 Identities=16% Similarity=0.228 Sum_probs=135.6
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEecc--CceEEEEecc--CceEEEEEcCC--eEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlk--nYs~lysIs~--~~VqEIkiSpg--~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+.|++ +|+.++....|+.++|||+. +...+..+.+ ..|..+.++|. -.+++.... +..++||++.+|+...
T Consensus 15 l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 15 AVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQ 91 (753)
T ss_dssp ECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEE
T ss_pred EEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccc
Confidence 45666 68888888899999999999 6677888875 78999999864 334444444 4679999999997333
Q ss_pred EEEeecccCCc---cchhhhh-cceeeEeecCCeeeEEEcccce--EEEecccccCCCceEEEee-------------cC
Q 016020 265 VFYHLLHRNKK---VDFIEQF-NEKLLVKQENENLQILDVRNAE--LMEVSRTEFMTPSAFIFLY-------------EN 325 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~-~ekLLIKQed~~L~I~Dv~~~k--i~~v~~t~~~~PsAFiFly-------------~~ 325 (396)
...+ -.+... +.|.+.. +..|++...|+.+++||+.+++ .......+.....+..|.+ ++
T Consensus 92 ~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~ 170 (753)
T 3jro_A 92 IAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (753)
T ss_dssp EEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred cccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence 2221 144444 7777733 8899999999999999999873 3335567888889999998 47
Q ss_pred eEEEEEEc-CeEEEEeccc-----ceeeeeccccccCCC---CCC---CcEEEccCCcEEEEeccCC
Q 016020 326 QLFLTFRN-RTVAVWNFRG-----ELVTSFEDHLLWHPD---CNT---NNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 326 qLFLTfs~-gti~iWd~~g-----eL~t~fedh~l~~~~---c~~---n~~~it~~qd~ii~~~~~~ 380 (396)
+++++-+. |+|.+||++. .++..+..|--.... +|+ +++++|...|=.|......
T Consensus 171 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 77777775 9999999986 355677777443222 566 7888888877555444433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=101.21 Aligned_cols=116 Identities=10% Similarity=0.156 Sum_probs=88.7
Q ss_pred eEEeeCCC--CcEEEeecCCCeEEEEeccC-ceEE-EEec--cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVN--GKVLTYSAQDSIYKVFDLKN-YTML-YSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~N--gkIlt~~a~d~~YrVwdlkn-Ys~l-ysIs--~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
-+.|++.+ |+.++....|+.++|||+.+ ...+ ..+. ...|..+.++|+--+|+.... ...++||++++|+.+
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC--DKTAKMWDLSSNQAI 121 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEE
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC--CCcEEEEEcCCCCce
Confidence 46788855 89999999999999999997 4443 4554 488999999987655555554 468899999999987
Q ss_pred EEEEeecccCCc---cchh-hhhcceeeEeecCCeeeEEEcccceEEEeccc
Q 016020 264 KVFYHLLHRNKK---VDFI-EQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~Fi-E~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t 311 (396)
.... +... +.|. ...+.+|++...|+.|++||+.+++.+.....
T Consensus 122 ~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 122 QIAQ----HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp EEEE----CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred eecc----ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 6433 4444 6663 23677899999999999999999887665443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-11 Score=119.57 Aligned_cols=177 Identities=6% Similarity=0.049 Sum_probs=127.7
Q ss_pred eEEeeCC-----CCcEEEeecCCCeEEEEeccCceE-----------EEEe--ccCceEEEEEcCCeEEEEEecCCCeee
Q 016020 190 FVEFDDV-----NGKVLTYSAQDSIYKVFDLKNYTM-----------LYSI--SDKHVQEIKISPGIMLLIFNRSSSHVP 251 (396)
Q Consensus 190 fVEFDd~-----NgkIlt~~a~d~~YrVwdlknYs~-----------lysI--s~~~VqEIkiSpg~~Ll~~q~~~~~ip 251 (396)
-+.|.+. +|..||..+.|+++||||+.+.+. ...+ ....|..+.++|+-.| +.... +..
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l-asgs~--Dgt 288 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV-VCGFK--NGF 288 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE-EEEET--TSE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE-EEEeC--CCE
Confidence 3678774 478999999999999999987632 1233 3378999999987654 44444 578
Q ss_pred eEEEEeecCcE-EEEEEeecccCCccch----hhhhc-ceeeEeecCCeeeEEEcccceEEEecccccC--CCceEEEee
Q 016020 252 LKILSIEDGTV-LKVFYHLLHRNKKVDF----IEQFN-EKLLVKQENENLQILDVRNAELMEVSRTEFM--TPSAFIFLY 323 (396)
Q Consensus 252 lkIl~IetG~~-l~s~~~~L~~sk~i~F----iE~~~-ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~--~PsAFiFly 323 (396)
++|||+++|+. ...+. .|+..|.= ....+ ..|+....|+.++|||++++++..+..++.. ...+.-|.+
T Consensus 289 V~lWD~~~~~~~~~~~~---~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQ---VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp EEEEETTBCSSCSEEEE---CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred EEEEECCCCCCceEEee---cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 99999999854 33344 56666432 23355 6789999999999999999887665555543 357788999
Q ss_pred cCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCcE
Q 016020 324 ENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQDL 372 (396)
Q Consensus 324 ~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd~ 372 (396)
+++.|++-++ ++|++||.+. ..+.++.+|.-++. .+|+++.++|+..|=
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg 419 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG 419 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence 9999888776 7999999886 56666777764432 266777666665553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-08 Score=90.28 Aligned_cols=232 Identities=15% Similarity=0.152 Sum_probs=153.4
Q ss_pred hhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 016020 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (396)
Q Consensus 101 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 180 (396)
+++-...|.-.+||..||+.+-.+....... ++-++...+.+++++. .++ +.+..+ +..|++ +.-
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~--~~~----~i~~~d---~~~~~~----~~~ 77 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV--DTAITSDCSNVVVTSD--FCQ----TLVQIE---TQLEPP----KVV 77 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECCCCEE--EEEECSSSCEEEEEES--TTC----EEEEEE---CSSSSC----EEE
T ss_pred EEEecCCCeEEEEeCcccceeeeEEccCCcc--eEEEcCCCCEEEEEeC--CCC----eEEEEE---CCCCce----eEE
Confidence 4444567888999999999988877554444 7888877776665332 122 222232 222221 133
Q ss_pred eecccCCCCe-EEeeCCCCcEEEeecCC-C--eEEEEeccCceEEEEecc-CceEEEEEcCCe-EEEEEecCCCeee-eE
Q 016020 181 ESESLKWPGF-VEFDDVNGKVLTYSAQD-S--IYKVFDLKNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVP-LK 253 (396)
Q Consensus 181 ~~~~l~~Pgf-VEFDd~NgkIlt~~a~d-~--~YrVwdlknYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~ip-lk 253 (396)
....-..|-. +.|++ +|+.++....+ + .++|||+.+.+.+-.+.. .....+.+||+- .|++.... .-. +.
T Consensus 78 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~i~ 154 (331)
T 3u4y_A 78 AIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRS--SANTVR 154 (331)
T ss_dssp EEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEET--TTTEEE
T ss_pred ecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecC--CCceEE
Confidence 3334467888 99999 66655544444 3 999999999998888876 778999999874 34444433 124 78
Q ss_pred EEEeecCcEEEEE-EeecccCC---ccchhhhhcceeeEee-cCCeeeEEEcccceE---EEecccccCCCceEEEeecC
Q 016020 254 ILSIEDGTVLKVF-YHLLHRNK---KVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 254 Il~IetG~~l~s~-~~~L~~sk---~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki---~~v~~t~~~~PsAFiFly~~ 325 (396)
+|++..+..+... ...+.... .+.|.+ .+++|++-. .+..|.+||+.+++. +...+. ...|....|.+++
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg 232 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDG 232 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTS
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCC
Confidence 8998876555433 11222222 277777 788777655 678999999999887 554443 4788999999999
Q ss_pred e-EEEEEE-cCeEEEEeccc-ce--eeeeccc
Q 016020 326 Q-LFLTFR-NRTVAVWNFRG-EL--VTSFEDH 352 (396)
Q Consensus 326 q-LFLTfs-~gti~iWd~~g-eL--~t~fedh 352 (396)
+ ||++-. ++.|.+||... ++ +..+..+
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~ 264 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHG 264 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence 8 666655 37999999985 55 5555555
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.8e-10 Score=102.34 Aligned_cols=212 Identities=8% Similarity=0.045 Sum_probs=136.1
Q ss_pred hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 016020 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (396)
Q Consensus 100 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 179 (396)
++++-...|+ ..|+..+++.+.......-.++. +...++.+.+++ ..|. ..+.- +++.|+ ++
T Consensus 33 ~la~g~~~~~-~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~d~----~v~iW---d~~~~~-----~~ 94 (355)
T 3vu4_A 33 CLILSTLKSF-EIYNVHPVAHIMSQEMRHLSKVR---MLHRTNYVAFVT--GVKE----VVHIW---DDVKKQ-----DV 94 (355)
T ss_dssp EEEEECSSEE-EEEEETTEEEEEEEECSCCCEEE---ECTTSSEEEEEC--SSTT----EEEEE---ETTTTE-----EE
T ss_pred EEEEEcCCEE-EEEecCCcceeeeeecCCeEEEE---EcCCCCEEEEEE--CCcc----EEEEE---ECCCCc-----EE
Confidence 3444445555 58888777776665543322222 223344444422 2232 22222 223322 23
Q ss_pred eeecccCCCC---eEEeeCCCCcEEEeecCCCeEEEEeccCc-eEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 180 FESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 180 F~~~~l~~Pg---fVEFDd~NgkIlt~~a~d~~YrVwdlknY-s~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
.+ +.+++ -+.|++ ++.++ +.|+.++|||+.+. +.+.++.. ...-..++++.+++.... ....++||
T Consensus 95 ~~---~~~~~~v~~v~~~~-~~~~~---~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~--~~g~v~iw 164 (355)
T 3vu4_A 95 SR---IKVDAPVKDLFLSR-EFIVV---SYGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEF--NLGQIHIT 164 (355)
T ss_dssp EE---EECSSCEEEEEECS-SEEEE---EETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESS--CTTCEEEE
T ss_pred EE---EECCCceEEEEEcC-CEEEE---EEcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCC--cCcEEEEE
Confidence 22 12333 345655 33333 34789999999999 77766665 555566777443322133 35678999
Q ss_pred EeecCcE----------------EEEEEeecccCCc---cchhhhhcceeeEeecCCe-eeEEEcccceEEEecc-c-cc
Q 016020 256 SIEDGTV----------------LKVFYHLLHRNKK---VDFIEQFNEKLLVKQENEN-LQILDVRNAELMEVSR-T-EF 313 (396)
Q Consensus 256 ~IetG~~----------------l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~-L~I~Dv~~~ki~~v~~-t-~~ 313 (396)
|+.+|+. +..+. .|... +.|.+ .+.+|+....|+. ++|||+.+++++.... + |.
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp ECCC------------------CCEEEC---CCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred ECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 9999872 33333 66666 78888 8999999999998 9999999999988776 4 88
Q ss_pred CCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 314 MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
....+.-|.++++++++-+. ++|.+||++.
T Consensus 241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp SCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 89999999999999999988 8999999975
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-09 Score=92.88 Aligned_cols=254 Identities=10% Similarity=0.057 Sum_probs=159.5
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCc-eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDE-VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e-vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
+++++-...|.-.++|..|++.+-.+...... -++++-++...+.+++++ +++ ..+ ...+ +..|+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~-~~v--~~~d---~~~~~----- 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS-ESL--VKID---LVTGE----- 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT-TEE--EEEE---TTTCC-----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC-CeE--EEEE---CCCCC-----
Confidence 45555667888899999999998877654322 256677776665555432 111 122 2222 12222
Q ss_pred cce--eecc----cCCCCeEEeeCCCCcEEEeec------------CCCeEEEEeccCceEEEEecc-CceEEEEEcCCe
Q 016020 178 ALF--ESES----LKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGI 238 (396)
Q Consensus 178 ~LF--~~~~----l~~PgfVEFDd~NgkIlt~~a------------~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~ 238 (396)
.+- .... -..|.-+.|++ +|+.+.... .++.+.+||+.+.+.+..+.. ..+..+.+||+-
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 146 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS
T ss_pred eEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC
Confidence 221 1111 12688899998 665554443 579999999999998887764 678899999654
Q ss_pred -EEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc-CCccchhhhhcceeeEeecCC-----------------------
Q 016020 239 -MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR-NKKVDFIEQFNEKLLVKQENE----------------------- 293 (396)
Q Consensus 239 -~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~-sk~i~FiE~~~ekLLIKQed~----------------------- 293 (396)
.|++.. -.+.+||+++|+.+..+.. +. ...+.|.+ .+.+|++..++.
T Consensus 147 ~~l~~~~-----~~i~~~d~~~~~~~~~~~~--~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
T 1pby_B 147 SKLYGLG-----RDLHVMDPEAGTLVEDKPI--QSWEAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218 (337)
T ss_dssp SCEEEES-----SSEEEEETTTTEEEEEECS--TTTTTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred CEEEEeC-----CeEEEEECCCCcEeeeeec--cccCCCceeCC-CccEEeeeccCCCceeeeeeccccccccccccccc
Confidence 344441 3489999999998877652 22 24566655 777777665443
Q ss_pred -eeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeeccc-cccC-CCCCCCc-EEEc
Q 016020 294 -NLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFEDH-LLWH-PDCNTNN-IYIT 367 (396)
Q Consensus 294 -~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fedh-~l~~-~~c~~n~-~~it 367 (396)
.|.+||+.++++..+ ...+...|.+..|.++++.+++. ++.|.+||... +++..++.+ .++. ...++++ +|++
T Consensus 219 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred cceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence 468999999988632 22344567888999988765544 89999999986 666665532 2221 1144554 5555
Q ss_pred cCCcEEEEe
Q 016020 368 SDQDLIISY 376 (396)
Q Consensus 368 ~~qd~ii~~ 376 (396)
....-|..|
T Consensus 298 ~~~~~i~v~ 306 (337)
T 1pby_B 298 GALGDLAAY 306 (337)
T ss_dssp SBSSEEEEE
T ss_pred cCCCcEEEE
Confidence 443333333
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=107.44 Aligned_cols=176 Identities=8% Similarity=-0.041 Sum_probs=109.1
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEee----
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL---- 269 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~---- 269 (396)
.|++||..+.|+++||||+++...+..+.. ..|..++++|. -.+|+.... +..++|||+.+|+........
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER--NGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET--TSEEEEEETTCCC----------CS
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC--CCEEEEEECCCCcccccccccCCcc
Confidence 589999999999999999999887666554 88999999985 455566555 567899999999876654310
Q ss_pred ------------------cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCc-----------
Q 016020 270 ------------------LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS----------- 317 (396)
Q Consensus 270 ------------------L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps----------- 317 (396)
-.+... +.|....+..|+....|+.+++||+.+++.......+.....
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 112222 567777899999999999999999999876654333221111
Q ss_pred -------eEEEe-ecCeEEEEE-E-cCeEEEEeccc-ceeeeeccccccC---CCCCCCcEEEccCCcEEE
Q 016020 318 -------AFIFL-YENQLFLTF-R-NRTVAVWNFRG-ELVTSFEDHLLWH---PDCNTNNIYITSDQDLII 374 (396)
Q Consensus 318 -------AFiFl-y~~qLFLTf-s-~gti~iWd~~g-eL~t~fedh~l~~---~~c~~n~~~it~~qd~ii 374 (396)
..+|. ...++|++. + +|+|.+||.+. +.+..+..|--++ ...||+++..++..|=++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 12222 234555554 3 49999999986 5555455553322 226788888777766443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-08 Score=90.56 Aligned_cols=182 Identities=10% Similarity=0.028 Sum_probs=131.3
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc-----------eEEEEEcCC-eEEEEEecCCCeeeeE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH-----------VQEIKISPG-IMLLIFNRSSSHVPLK 253 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~-----------VqEIkiSpg-~~Ll~~q~~~~~iplk 253 (396)
..|.-+.|++..+.+.+.+..++.+.+||+++.+.+..+.... ...+.+||+ -.+++... ...-.+.
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~ 167 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIW 167 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEE
Confidence 4588899999555588888889999999999999888887633 788999975 44444442 1245688
Q ss_pred EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccc----ccCCCceEEEeecCe-EE
Q 016020 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT----EFMTPSAFIFLYENQ-LF 328 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t----~~~~PsAFiFly~~q-LF 328 (396)
+||+++|+.+..+...-..-..+.|.+ .+++|++...++.|.+||+.+++....... +...|....|.++++ +|
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 999999999887762212234477777 889999999999999999999998875544 333455678888877 66
Q ss_pred EEEEc-CeEEEEeccc-ceeeeeccccccCC-CCCCCc-EEEccC
Q 016020 329 LTFRN-RTVAVWNFRG-ELVTSFEDHLLWHP-DCNTNN-IYITSD 369 (396)
Q Consensus 329 LTfs~-gti~iWd~~g-eL~t~fedh~l~~~-~c~~n~-~~it~~ 369 (396)
++-.. +.|.+||... +++..+.-+.+... ..++++ +|++..
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEET
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEEC
Confidence 66655 8999999965 66666654333211 134555 777764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-10 Score=105.33 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=108.0
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE-----ecc--CceEEEEEcC--------CeEEEEEecCCCeeeeEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-----ISD--KHVQEIKISP--------GIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys-----Is~--~~VqEIkiSp--------g~~Ll~~q~~~~~iplkI 254 (396)
-..+.+.+++.++..+.|+++|+||+++.+.... +++ ..|..|.||| +-.+|+..+. +-.++|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~--D~tv~~ 170 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD--DCTLII 170 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET--TSEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC--CCeEEE
Confidence 3445566788999999999999999999876432 232 7899999997 3345566665 678999
Q ss_pred EEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec----------------------
Q 016020 255 LSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---------------------- 309 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~---------------------- 309 (396)
||+.+++.+..+. .+..+ +.|.+....+|+....|+.+++||+.+++.....
T Consensus 171 Wd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 171 WRLTDEGPILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEETTEEEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EECCCCceeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999998887655 33344 8898855568999999999999999998765422
Q ss_pred ---ccccCCCceEEEe-ecCeEEEEEEc-CeEEEEeccc-ceeeeecccc
Q 016020 310 ---RTEFMTPSAFIFL-YENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHL 353 (396)
Q Consensus 310 ---~t~~~~PsAFiFl-y~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~ 353 (396)
..+........|. ++++.+++.+. +++.+||+.. .....+.+|.
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~ 297 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST 297 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec
Confidence 2344555666665 68888888877 8999999876 4555665554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=108.01 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=87.1
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCc---eEEEEecc-C-ceEEEEEcC----------------CeEEEEEec
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISD-K-HVQEIKISP----------------GIMLLIFNR 245 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY---s~lysIs~-~-~VqEIkiSp----------------g~~Ll~~q~ 245 (396)
.||+-|-| |+| |.+..+++|+..+. +.+|+... + -|..|.++| .+-.|++.|
T Consensus 49 ~~~~~~~~-----~~~--~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 49 RAGCKEPC-----IIT--ACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp ----CEEE-----EEE--EESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred cCCCCccE-----EEE--eccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 35666655 566 67899999999999 89999887 3 366666666 333434333
Q ss_pred C------------C-------------------CeeeeEEEEe-ecCcEEEEEEeecccCCc--cchhhh--hcceeeEe
Q 016020 246 S------------S-------------------SHVPLKILSI-EDGTVLKVFYHLLHRNKK--VDFIEQ--FNEKLLVK 289 (396)
Q Consensus 246 ~------------~-------------------~~iplkIl~I-etG~~l~s~~~~L~~sk~--i~FiE~--~~ekLLIK 289 (396)
. + ..-.+++|++ ++|+.+.++. +|+... +.|.+. .++.|+..
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~--~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF--LMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE--ECCCSSCEEEEEEEETSTTEEEEE
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec--cCCCceeeEEeeccCCCCceEEEe
Confidence 3 0 2456777777 5577777655 233333 677776 45899999
Q ss_pred ecCCeeeEEEcccceEEEecccccCC---CceEEEeecCeEE
Q 016020 290 QENENLQILDVRNAELMEVSRTEFMT---PSAFIFLYENQLF 328 (396)
Q Consensus 290 Qed~~L~I~Dv~~~ki~~v~~t~~~~---PsAFiFly~~qLF 328 (396)
..|+.|+|||+.+++++++..++... ..+..|+++++++
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF 241 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEE
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEE
Confidence 99999999999999999988765432 2223466655544
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-10 Score=117.67 Aligned_cols=151 Identities=12% Similarity=0.169 Sum_probs=121.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
.+.|.+ |+.|+..+.|+.++|||+++.+.+..+.. ..|..+.++|+-..++.... ...++|||+++|+.. .+..
T Consensus 63 ~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~--dg~V~lwd~~~~~~~-~~~i 137 (902)
T 2oaj_A 63 EMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ--NGSMIVYDIDRDQLS-SFKL 137 (902)
T ss_dssp EEEEET--TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET--TSCEEEEETTTTEEE-EEEE
T ss_pred EEEEcC--CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC--CCcEEEEECCCCccc-ccee
Confidence 678998 77888888999999999999999888865 67999999998877777666 456799999999864 3321
Q ss_pred ---------ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccc------------------cCCCce
Q 016020 269 ---------LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------------------FMTPSA 318 (396)
Q Consensus 269 ---------~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~------------------~~~PsA 318 (396)
+-.|... ++|.+..+..|++..+|+.+ +||+.+++...+...+ ...+.+
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 1123333 78888667899999999999 9999999988766544 356788
Q ss_pred EEEeecCeEEEEEEc-CeEEEEecc-ccee
Q 016020 319 FIFLYENQLFLTFRN-RTVAVWNFR-GELV 346 (396)
Q Consensus 319 FiFly~~qLFLTfs~-gti~iWd~~-geL~ 346 (396)
..|.+++++++|-+. |+|.+||.+ |+++
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999999987 899999996 4644
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-08 Score=87.75 Aligned_cols=228 Identities=15% Similarity=0.173 Sum_probs=148.5
Q ss_pred cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc-----cee
Q 016020 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-----LFE 181 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~-----LF~ 181 (396)
.|.-.++|..|++.+..+..... ++++-++.....+.+.+ . .++ .....+ +..|+.-...+ -++
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~-~-~~~----~v~~~d---~~~~~~~~~~~~~~~~~~~ 136 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLK--PFGATINNTTQTLWFGN-T-VNS----AVTAID---AKTGEVKGRLVLDDRKRTE 136 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC--CCSEEEETTTTEEEEEE-T-TTT----EEEEEE---TTTCCEEEEEESCCCCCCS
T ss_pred CccEEEEcCCCCeEEEEEecCCC--cceEEECCCCCEEEEEe-c-CCC----EEEEEe---CCCCeeEEEEecCCCcccc
Confidence 45678888888888887765322 45666776666555432 1 111 222222 22222100000 011
Q ss_pred ecccCCCCeEEeeCCCCcEEEee-cCCCeEEEEeccCceEEEEec--cCceEEEEEcCC-eEEEEEecCCCeeeeEEEEe
Q 016020 182 SESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 182 ~~~l~~PgfVEFDd~NgkIlt~~-a~d~~YrVwdlknYs~lysIs--~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~I 257 (396)
...-.+|.-+.|++-.+.+.+.+ ..++.+.+||+++.+.+..+. +..+..+.++|+ -.|++.... -.+.+||+
T Consensus 137 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~i~~~d~ 213 (353)
T 3vgz_A 137 EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD---GELITIDT 213 (353)
T ss_dssp SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT---SEEEEEET
T ss_pred ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC---CeEEEEEC
Confidence 11112366689998555555555 458889999999999999997 366899999964 455555442 35668999
Q ss_pred ecCcEEEEEEeecc-cCC---ccchhhhhcceeeEeecC-CeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEE
Q 016020 258 EDGTVLKVFYHLLH-RNK---KVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTF 331 (396)
Q Consensus 258 etG~~l~s~~~~L~-~sk---~i~FiE~~~ekLLIKQed-~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTf 331 (396)
.+|+.+..+..--. +.. .+.|.+ .+++|++...+ ..|.+||+.+++++...... .|....|.++++ +|++-
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 214 ADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--ESLAVLFNPARNEAYVTH 290 (353)
T ss_dssp TTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECS--SCCCEEEETTTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--CCceEEECCCCCEEEEEE
Confidence 99999988763111 111 267777 78888887654 89999999999988755543 367889999987 77777
Q ss_pred E-cCeEEEEeccc-ceeeeecc
Q 016020 332 R-NRTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 332 s-~gti~iWd~~g-eL~t~fed 351 (396)
. +++|.+||.+. +++..++.
T Consensus 291 ~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 291 RQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEEec
Confidence 5 49999999975 77666653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-08 Score=99.53 Aligned_cols=253 Identities=9% Similarity=0.045 Sum_probs=168.6
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
+.++++....|.-+++|..|++.+-.+..... ++++-++.....|.+.| .| .. .+.+.+. . ..+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~---~d--~~--V~v~D~~---~---~t~~ 213 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG---RD--AR--IDMIDLW---A---KEPT 213 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE---TT--SE--EEEEETT---S---SSCE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC---CC--Ce--EEEEECc---C---CCCc
Confidence 34556666778899999999999998875544 89998888888777755 12 22 2222220 0 0122
Q ss_pred cceeecccCCCCeEEeeCC---CCcE-EEeecCCCeEEEEeccCceEEEEecc-------------CceEEEEEcC-CeE
Q 016020 178 ALFESESLKWPGFVEFDDV---NGKV-LTYSAQDSIYKVFDLKNYTMLYSISD-------------KHVQEIKISP-GIM 239 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~---NgkI-lt~~a~d~~YrVwdlknYs~lysIs~-------------~~VqEIkiSp-g~~ 239 (396)
.+-+-..-.+|-.+.|++. +|+. .+.+..++.++|||..+.+.+..|+. ..+..|.+|| |-.
T Consensus 214 ~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 214 KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred EEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 2222222346888999972 4554 45455689999999999999999874 1688999997 555
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeecc-cCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccC-CC
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFM-TP 316 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~-~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~-~P 316 (396)
+++.... .-.+.+||+.+++.+........ .-..+.|.+ .+.++++.. .+..+.+||+.+++++.+..+... +|
T Consensus 294 ~~vs~~~--~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 294 FIVNVKE--TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp EEEEETT--TTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred EEEEECC--CCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 5565544 46788999999887763222111 111267776 889988764 578999999999999987665433 23
Q ss_pred -ceEE-Eeec-CeEEEEEE--cCeEEEEecc--------cceeeeeccccccCCC---CC-CCcEEEcc
Q 016020 317 -SAFI-FLYE-NQLFLTFR--NRTVAVWNFR--------GELVTSFEDHLLWHPD---CN-TNNIYITS 368 (396)
Q Consensus 317 -sAFi-Fly~-~qLFLTfs--~gti~iWd~~--------geL~t~fedh~l~~~~---c~-~n~~~it~ 368 (396)
+... +.++ +.+|+|-+ +++|.+||.+ ++.+..++.|-.+... .| ...+|++.
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 2222 4455 88888875 5899999997 4677888877543222 23 35667765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=114.80 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=121.6
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceE-E--EEeccCceEEE--EEcCCe-EEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L--YSISDKHVQEI--KISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~-l--ysIs~~~VqEI--kiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
-+.|.+ +..|+..+.|+++++||+++... + .......|..| .++|+- .+|+.... +..++|||+.+|+.+
T Consensus 271 sv~~s~--~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~--D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 271 TFDFLS--PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV--DGYFYIFNPKDIATT 346 (524)
T ss_dssp EEEESS--SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET--TSEEEEECGGGHHHH
T ss_pred EEEecC--CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc--CCeEEEEECCCCCcc
Confidence 356665 34688889999999999997642 2 33345889999 567742 55566655 678999999999988
Q ss_pred EEEEeecc--cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 264 KVFYHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 264 ~s~~~~L~--~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
..+.-... .-..+.|.+ +++.|+...+|..+++||++++++..+..+|..++.+.-|.++++++++-+. |+|.+||
T Consensus 347 ~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp CEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred cccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 76652111 123589998 6888999999999999999999988877789999999999999999999887 9999999
Q ss_pred cccceeeee
Q 016020 341 FRGELVTSF 349 (396)
Q Consensus 341 ~~geL~t~f 349 (396)
..+.+...+
T Consensus 426 ~~~~~~~~~ 434 (524)
T 2j04_B 426 AARRLLHGI 434 (524)
T ss_dssp SCSSTTTCC
T ss_pred chHhhcccc
Confidence 988655444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-09 Score=111.74 Aligned_cols=173 Identities=10% Similarity=0.045 Sum_probs=130.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC------ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE-
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV- 262 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~------~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~- 262 (396)
=|.|.+ .|+.||..+.|+..+|||.++ ++..+.+. .|..+.|||+-.+|+.... +..++||++++|+.
T Consensus 90 ~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~--DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 90 VCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE--DGELQFFSIRKNSEN 164 (588)
T ss_dssp EEEECS-SSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET--TSEEEEEECCCCTTT
T ss_pred EEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC--CCEEEEEECCCCccc
Confidence 467888 899999999999999999766 77776633 3999999988888787777 67799999999963
Q ss_pred ------EEEEEe-ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEE---Eec-ccccCCCceEEEeecCeEE
Q 016020 263 ------LKVFYH-LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELM---EVS-RTEFMTPSAFIFLYENQLF 328 (396)
Q Consensus 263 ------l~s~~~-~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~---~v~-~t~~~~PsAFiFly~~qLF 328 (396)
+..+.. .-.|... ++|.+ .+ |+....|..+++||+.++++. .+. ..|...+.+.-|+ ++..
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~L 239 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKV 239 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEE
T ss_pred cccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEE
Confidence 455541 1122233 89997 56 999999999999999998853 233 4777889998898 5777
Q ss_pred EEEEcCeEEEEecccc-eeeeeccccccC-----CCCCCCcEEEccCCcE
Q 016020 329 LTFRNRTVAVWNFRGE-LVTSFEDHLLWH-----PDCNTNNIYITSDQDL 372 (396)
Q Consensus 329 LTfs~gti~iWd~~ge-L~t~fedh~l~~-----~~c~~n~~~it~~qd~ 372 (396)
++.++|+|++||.++. +.+..-+|.-+. |+.++....+++++|=
T Consensus 240 ASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 240 VLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred EEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 7778999999999985 423222566542 2377777777777663
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=89.73 Aligned_cols=246 Identities=10% Similarity=0.015 Sum_probs=150.0
Q ss_pred hccccceeeeccccceEEEecCCC----CceEEEEeeecCCCeEEEEEeEe---cCCC--ceeeeEeeehhhhhhCCCCC
Q 016020 105 AHSGVCAAFSRETNRRICFLNVSP----DEVIRSLFYNKNNDSLITVSVYA---SDNF--SSLKCRSTKIEYIRRGKPDS 175 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~s~----~evIrsifyN~~n~slI~vSv~~---sd~~--s~L~cr~~~~~~i~~gk~~~ 175 (396)
...|.-.+||..+++.+-.+.... ..-++++-++.+.+.|.+++... .+.+ ..=+.+..+.+ .
T Consensus 53 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~---~----- 124 (337)
T 1pby_B 53 NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE---T----- 124 (337)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT---T-----
T ss_pred CCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC---C-----
Confidence 446778889988898887776543 12455677777666666654211 0111 00122222221 1
Q ss_pred CCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc-eEEEEEcCCeE-EEEEecCCCee---
Q 016020 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH-VQEIKISPGIM-LLIFNRSSSHV--- 250 (396)
Q Consensus 176 ~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~-VqEIkiSpg~~-Ll~~q~~~~~i--- 250 (396)
+..+-.-..-..|.-+.|++ +|+.+... ++.+.+||+.+.+.+..+.... ...+.++|+-. |++.......+
T Consensus 125 ~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 125 LSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp TEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred CcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence 11111111123577788998 56644433 6889999999999988887532 22335565433 22222222222
Q ss_pred ------------------eeEEEEeecCcEEEEEEeecccCC--ccchhhhhcceeeEeecCCeeeEEEcccceEEEecc
Q 016020 251 ------------------PLKILSIEDGTVLKVFYHLLHRNK--KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 251 ------------------plkIl~IetG~~l~s~~~~L~~sk--~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
-+.+||+++|+.. .+.+.-+... .+.|.+ .+.+|++. +..|.+||+.+++.+....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 277 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP 277 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred eeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceec
Confidence 5799999999986 4332212112 278887 88889988 7899999999998877554
Q ss_pred cccCCCceEEEeecCe-EEEEEEcCeEEEEeccc-ceeeeeccccccCCCCCCCcEEE
Q 016020 311 TEFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYI 366 (396)
Q Consensus 311 t~~~~PsAFiFly~~q-LFLTfs~gti~iWd~~g-eL~t~fedh~l~~~~c~~n~~~i 366 (396)
.. ..|.+..|.++++ ||++-.++.|.+||... +++..++-+.....-+....+|.
T Consensus 278 ~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (337)
T 1pby_B 278 LP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFT 334 (337)
T ss_dssp CS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGGCCCBTCCCEEEE
T ss_pred CC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCCCceeEeeeEEEe
Confidence 43 5789999999887 56664459999999976 77777765433222234444553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-07 Score=79.56 Aligned_cols=224 Identities=10% Similarity=0.051 Sum_probs=135.6
Q ss_pred hccccceeeecc-ccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeec
Q 016020 105 AHSGVCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183 (396)
Q Consensus 105 ~~sG~c~af~~~-t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~ 183 (396)
...|...+|+.. +++....--.....-+.++-++...+.|++++. ++ ..++...+.. ..|++ ..+-.-.
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~-~~v~~~~~~~---~~~~~---~~~~~~~ 81 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PE-FRVLAYRIAP---DDGAL---TFAAESA 81 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TT-TEEEEEEECT---TTCCE---EEEEEEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CC-CeEEEEEecC---CCCce---eeccccc
Confidence 456777888763 454333221223445666777766665555331 21 2343333321 01111 1111111
Q ss_pred ccCCCCeEEeeCCCCc-EEEeecCCCeEEEEec---cCceEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEe
Q 016020 184 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDL---KNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 184 ~l~~PgfVEFDd~Ngk-Ilt~~a~d~~YrVwdl---knYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~I 257 (396)
.-..|..+.|++ +|+ +++.+..++.+.+||+ +..+.+..+.. ..+..+.+||+- .|++.... .-.+.+|++
T Consensus 82 ~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~ 158 (343)
T 1ri6_A 82 LPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDRICLFTV 158 (343)
T ss_dssp CSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTEEEEEEE
T ss_pred cCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC--CCEEEEEEe
Confidence 123789999999 555 6566667999999999 66667777765 678999999764 45555433 345899999
Q ss_pred ec-CcEEEEE--EeecccCCc---cchhhhhcceeeEee-cCCeeeEEEcc--cceEEE---e--cccc---cCCCceEE
Q 016020 258 ED-GTVLKVF--YHLLHRNKK---VDFIEQFNEKLLVKQ-ENENLQILDVR--NAELME---V--SRTE---FMTPSAFI 320 (396)
Q Consensus 258 et-G~~l~s~--~~~L~~sk~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~--~~ki~~---v--~~t~---~~~PsAFi 320 (396)
.+ |+..... ....+.... +.|.+ .+++|++-. .+..+.+||+. ++++.. + .+.. ...|.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred cCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 98 7654433 333333322 66777 788887665 78899999994 454322 1 1111 34566789
Q ss_pred EeecCe-EEEEEE-cCeEEEEecc
Q 016020 321 FLYENQ-LFLTFR-NRTVAVWNFR 342 (396)
Q Consensus 321 Fly~~q-LFLTfs-~gti~iWd~~ 342 (396)
|.++++ ||++-+ ++.|.+||++
T Consensus 238 ~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 238 ITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEecCCCEEEEEEEc
Confidence 999885 555664 4899999998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-07 Score=82.14 Aligned_cols=182 Identities=13% Similarity=0.196 Sum_probs=120.8
Q ss_pred ccCCCCeEEeeCCCCc-EEEeecCCCeEEEEecc---CceEEEEeccC-----------ceEEEEEcCCeEEEEEecCCC
Q 016020 184 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLYSISDK-----------HVQEIKISPGIMLLIFNRSSS 248 (396)
Q Consensus 184 ~l~~PgfVEFDd~Ngk-Ilt~~a~d~~YrVwdlk---nYs~lysIs~~-----------~VqEIkiSpg~~Ll~~q~~~~ 248 (396)
....|..+.|++ +|+ +.+.+..++.++|||+. ..+.+..+... .+..+.+||+--+++.....
T Consensus 84 ~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~- 161 (347)
T 3hfq_A 84 PGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS- 161 (347)
T ss_dssp ESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-
T ss_pred CCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-
Confidence 356899999999 666 55555578999999996 45566666432 47889999765566655543
Q ss_pred eeeeEEEEee-cCcEEEEEEeecccCC---ccchhhhhcceeeEe-ecCCeeeEEEccc--ceEEEecc--cc------c
Q 016020 249 HVPLKILSIE-DGTVLKVFYHLLHRNK---KVDFIEQFNEKLLVK-QENENLQILDVRN--AELMEVSR--TE------F 313 (396)
Q Consensus 249 ~iplkIl~Ie-tG~~l~s~~~~L~~sk---~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~--~ki~~v~~--t~------~ 313 (396)
-.+.+|++. +|+........++... .+.|.+ .+.+|++- ..++.+.+||+.. +++..+.. +. .
T Consensus 162 -~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 162 -DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp -TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred -CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 368899999 6764443333333322 278887 88888884 5778999999984 66543221 11 1
Q ss_pred CCCceEEEeecCe-EEEEEE-cCeEEEEecc--c--ceeeeeccccccC---CCCCCCc-EEEccC
Q 016020 314 MTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR--G--ELVTSFEDHLLWH---PDCNTNN-IYITSD 369 (396)
Q Consensus 314 ~~PsAFiFly~~q-LFLTfs-~gti~iWd~~--g--eL~t~fedh~l~~---~~c~~n~-~~it~~ 369 (396)
..|.+..|.++++ ||++-+ +++|.+||++ | +.+..+..+-.+. -..++++ +|++..
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 3488899999997 677777 4899999986 3 3444555432211 1266776 555543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-08 Score=86.86 Aligned_cols=228 Identities=9% Similarity=0.039 Sum_probs=143.7
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 178 (396)
.++++-...|.-.++|..|++.+-.+......-++++-+....+.+.+.+ ..+ ..+. ..+. .. +..
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~-~~i~--~~d~---~t-----~~~ 77 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY-GDIY--GIDL---DT-----CKN 77 (349)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT-TEEE--EEET---TT-----TEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCC-CcEE--EEeC---CC-----CcE
Confidence 34455566788889999999988887755422356666776655444432 111 1222 2211 11 111
Q ss_pred ceeec-------ccCCCCeEEeeCCCCcEEEeecC------------CCeEEEEeccC---ceEEEEecc-CceEEEEEc
Q 016020 179 LFESE-------SLKWPGFVEFDDVNGKVLTYSAQ------------DSIYKVFDLKN---YTMLYSISD-KHVQEIKIS 235 (396)
Q Consensus 179 LF~~~-------~l~~PgfVEFDd~NgkIlt~~a~------------d~~YrVwdlkn---Ys~lysIs~-~~VqEIkiS 235 (396)
+..-. .-..|.-+.|++ +|+.++.... ++.+.+||+.+ .+.+-.... ..+..+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 156 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 156 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence 11111 123478899998 6766665554 48999999998 443333333 568888999
Q ss_pred CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC------------------------------------------
Q 016020 236 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN------------------------------------------ 273 (396)
Q Consensus 236 pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s------------------------------------------ 273 (396)
|+-.+++. .. . +.+||+.+|+.+..+.. +..
T Consensus 157 ~dg~l~~~-~~--~--i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 157 DDGSLYVA-GP--D--IYKMDVKTGKYTVALPL--RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp TTSCEEEE-SS--S--EEEECTTTCCEEEEECS--TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred CCCcEEEc-cC--c--EEEEeCCCCceeccccc--cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 76555443 22 2 89999999998876542 110
Q ss_pred -------------C---------------ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecC
Q 016020 274 -------------K---------------KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 274 -------------k---------------~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
. .+.|.+..+.+|++. +..|.+||+.+++.++..... ..|....|.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg 306 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKG 306 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCC
Confidence 0 011112267778877 779999999999988765433 458899999987
Q ss_pred e-EEEEEEcCeEEEEeccc-ceeeeecc
Q 016020 326 Q-LFLTFRNRTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 326 q-LFLTfs~gti~iWd~~g-eL~t~fed 351 (396)
+ ||++-.+++|.+||.+. +++..++-
T Consensus 307 ~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEecCCCeEEEEeccccceeeeeec
Confidence 5 56654459999999976 77777653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-08 Score=97.36 Aligned_cols=182 Identities=12% Similarity=0.118 Sum_probs=120.9
Q ss_pred eEEeeCCCCcEEE----eecCCCeEEEEeccCc--------eEEEEec-----cCceEEEEEcCC-eEEEEEecCCCeee
Q 016020 190 FVEFDDVNGKVLT----YSAQDSIYKVFDLKNY--------TMLYSIS-----DKHVQEIKISPG-IMLLIFNRSSSHVP 251 (396)
Q Consensus 190 fVEFDd~NgkIlt----~~a~d~~YrVwdlknY--------s~lysIs-----~~~VqEIkiSpg-~~Ll~~q~~~~~ip 251 (396)
-+.|++ +|+.|+ ..+.|+.++|||+.+. +.++.+. ...|..++|+|. -.+++.... +..
T Consensus 97 ~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~--Dg~ 173 (434)
T 2oit_A 97 HLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA--DGS 173 (434)
T ss_dssp EEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET--TSC
T ss_pred EEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC--CCe
Confidence 468888 688888 6788999999999876 3333332 478999999986 344444444 467
Q ss_pred eEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc-------CCCceEEE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-------MTPSAFIF 321 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~-------~~PsAFiF 321 (396)
++|||+.+|+.+.... .|... +.|.+ .+.+|++...|+.++|||++ ++.......+. ....++.|
T Consensus 174 v~iwD~~~~~~~~~~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 174 IAVLQVTETVKVCATL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp EEEEEESSSEEEEEEE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred EEEEEcCCCcceeecc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence 9999999997655443 33333 78888 69999999999999999999 44444322222 25678889
Q ss_pred eecCeEEEEEEcCe--------EEEEecccc-e--eeeecccccc-CC--CCCCCcEEEc--cCCcEEEEeccC
Q 016020 322 LYENQLFLTFRNRT--------VAVWNFRGE-L--VTSFEDHLLW-HP--DCNTNNIYIT--SDQDLIISYCKA 379 (396)
Q Consensus 322 ly~~qLFLTfs~gt--------i~iWd~~ge-L--~t~fedh~l~-~~--~c~~n~~~it--~~qd~ii~~~~~ 379 (396)
..++.++++++++. +.+||+... - ...+..+... .+ -.-.-.+|++ .|.++++.-.-.
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~ 322 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAA 322 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETT
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCC
Confidence 98888887877642 889999852 1 1222222221 00 1112245666 677776654433
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=97.01 Aligned_cols=163 Identities=9% Similarity=0.052 Sum_probs=116.5
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceE----------E------EEecc-CceEEEEEcCCeEEEEEe--cCCCee
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----------L------YSISD-KHVQEIKISPGIMLLIFN--RSSSHV 250 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~----------l------ysIs~-~~VqEIkiSpg~~Ll~~q--~~~~~i 250 (396)
.+.+...+|.+.+. ..++ ++||+..+... + ..+.. ..|..+.|||+-.+|+.. .....-
T Consensus 41 ~lavs~~~~~l~~~-~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 41 LLAVSNKYGLVFAG-GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CEEEETTTTEEEEE-ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred EEEEecCCCEEEEE-CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 46677756665554 3455 89988754311 1 11222 359999999765444421 234478
Q ss_pred eeEEEEeecC--------cEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceE
Q 016020 251 PLKILSIEDG--------TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 319 (396)
Q Consensus 251 plkIl~IetG--------~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAF 319 (396)
.++|||++++ +.+..+..+-.|+.. +.|.+..+..|++...|+.++|||+++++.......|...+.+.
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v 198 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSV 198 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEE
Confidence 8999999987 445555544345555 78888668889999999999999999997776666778889999
Q ss_pred EEeecCeEEEEEEc-CeEEEEecccceeeeeccccc
Q 016020 320 IFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHLL 354 (396)
Q Consensus 320 iFly~~qLFLTfs~-gti~iWd~~geL~t~fedh~l 354 (396)
-|.++++.+++-+. |+|.+||.+|+.+..+..|.-
T Consensus 199 ~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~ 234 (434)
T 2oit_A 199 CWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPF 234 (434)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTT
T ss_pred EEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcc
Confidence 99999988887776 899999999876666655543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.9e-08 Score=98.18 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=117.5
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec-cCceEEEEEcCCe-EEEEEecCCCeeeeEEEEe--ecCc
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSI--EDGT 261 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs-~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~I--etG~ 261 (396)
..|.+. ||+ .|++++.+..|+.++|||..+.+.+-.|. +..+..+++||+- .|++.... -.+.+||+ ++|+
T Consensus 139 ~~~~~~-~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 139 KKQLND-LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPT 213 (543)
T ss_dssp SSCCSC-CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCE
T ss_pred cccccc-cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC---CeEEEEECcCCCCc
Confidence 356676 887 68999999999999999999999999998 5679999999765 44444433 67999999 9999
Q ss_pred EEEEEEeecccCC--ccchhh---hhcceeeEeec-CCeeeEEEcccceEEEecccccC-----------CCceEEEeec
Q 016020 262 VLKVFYHLLHRNK--KVDFIE---QFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFM-----------TPSAFIFLYE 324 (396)
Q Consensus 262 ~l~s~~~~L~~sk--~i~FiE---~~~ekLLIKQe-d~~L~I~Dv~~~ki~~v~~t~~~-----------~PsAFiFly~ 324 (396)
.+..+.. ... .+.|.+ -.+.+|++..+ ++.+.|||..+++++.+..+..+ .|.+..|.++
T Consensus 214 ~~~~i~~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 214 KVAEIKI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp EEEEEEC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred EEEEEec---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 9887762 222 266654 16889999985 89999999999999887665432 4668889885
Q ss_pred -CeEEEEEEc-CeEEEEeccc
Q 016020 325 -NQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 325 -~qLFLTfs~-gti~iWd~~g 343 (396)
+.++++.+. |+|.+||...
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTT
T ss_pred CCEEEEEECCCCeEEEEEecC
Confidence 455666666 8999999976
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.3e-07 Score=80.63 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=109.8
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcE-EEEEEe
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV-LKVFYH 268 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~-l~s~~~ 268 (396)
|+...+.+.+.++.++.+++||+.+.+.+..+.. ... .+.+||+- .|++..... -.+.+||+++|+. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~--~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFC--QTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTT--CEEEEEECSSSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCC--CeEEEEECCCCceeEEeccc
Confidence 5666788889999999999999999998887764 566 99999754 455555543 3788999999998 555552
Q ss_pred ecccCCc-cchhhhhcceeeEeecCC---eeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEEc-Ce-EEEEec
Q 016020 269 LLHRNKK-VDFIEQFNEKLLVKQENE---NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFRN-RT-VAVWNF 341 (396)
Q Consensus 269 ~L~~sk~-i~FiE~~~ekLLIKQed~---~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs~-gt-i~iWd~ 341 (396)
- ..... +.|.+ .+.+|++..++. .|.+||+.+++++...+. ...|....|.++++ ||++-.. +. |.+|++
T Consensus 82 ~-~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 G-QSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp C-SSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred C-CCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 2 12223 66777 889999777663 899999999998876544 45678999999987 7777666 77 999999
Q ss_pred cc
Q 016020 342 RG 343 (396)
Q Consensus 342 ~g 343 (396)
+.
T Consensus 159 ~~ 160 (331)
T 3u4y_A 159 DA 160 (331)
T ss_dssp CT
T ss_pred CC
Confidence 86
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=99.68 Aligned_cols=212 Identities=12% Similarity=0.100 Sum_probs=147.8
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCC
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~ 187 (396)
|....++-++++..-.+|..+++-|.++=++.+...|.+.|. |+ .|+.-..+-+.. .+. ....-++..
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~---dg----~V~iwd~~~~l~-~l~-~~~~~~~~s--- 131 (588)
T 2j04_A 64 EFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN---NG----NVSVFKDNKMLT-NLD-SKGNLSSRT--- 131 (588)
T ss_dssp CCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET---TS----CEEEEETTEEEE-ECC-CSSCSTTTC---
T ss_pred CCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC---CC----cEEEEeCCceee-ecc-CCCcccccc---
Confidence 456667777777666788677888999999988777776552 21 222222100000 000 000000000
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCce-------EEEEec------cCceEEEEEcCCeEEEEEecCCCeeeeEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS------DKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-------~lysIs------~~~VqEIkiSpg~~Ll~~q~~~~~iplkI 254 (396)
-..|.|.+ +|+.|+..++|+++++||+++.+ .+..|. ...|..|.+||+- |+.... +-.+++
T Consensus 132 v~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~---D~tVrl 206 (588)
T 2j04_A 132 YHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS---NNSVFS 206 (588)
T ss_dssp EEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET---TCCEEE
T ss_pred EEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC---CCeEEE
Confidence 12689988 89999999999999999999985 367773 1589999999998 544444 588999
Q ss_pred EEeecCcEE---EEEEeeccc--CCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEE--eecCeE
Q 016020 255 LSIEDGTVL---KVFYHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF--LYENQL 327 (396)
Q Consensus 255 l~IetG~~l---~s~~~~L~~--sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF--ly~~qL 327 (396)
|++.+++.. ..+.. .|+ -..+.|. +.+|++.. ++.+++||+.++++....-+|.......-| .++++.
T Consensus 207 Wd~~~~~~~~~~~tL~~-~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQN-ASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp ECCCSSSSCCCEEEEEC-CCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred EECCCCccccceeeecc-cccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence 999998842 34431 132 2348888 68888887 689999999999997766679999999999 888866
Q ss_pred EEEEE-cCeEEEEecc
Q 016020 328 FLTFR-NRTVAVWNFR 342 (396)
Q Consensus 328 FLTfs-~gti~iWd~~ 342 (396)
.++.. +|+ ++|.++
T Consensus 282 La~a~edG~-klw~~d 296 (588)
T 2j04_A 282 LLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSSCEE-EEEESS
T ss_pred EEEEcCCCC-EEEeec
Confidence 55555 688 999974
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.1e-07 Score=78.35 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=105.5
Q ss_pred cCCCCeEEeeCCCCcEEEe-ecCCCeEEEEecc--Cce--EEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEe
Q 016020 185 LKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDLK--NYT--MLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~-~a~d~~YrVwdlk--nYs--~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~I 257 (396)
...|..+.|++ +|+.++. +..++.+++|++. +.+ .+-.+.. ..+..+.+||+- .|++.... .-.+.+|++
T Consensus 37 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~i~~~d~ 113 (343)
T 1ri6_A 37 PGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRL 113 (343)
T ss_dssp SSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT--TTEEEEEEE
T ss_pred CCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC--CCeEEEEEC
Confidence 34688999998 6664444 4445999999998 444 5555543 588999999764 45455543 245899999
Q ss_pred ecCcEEEEEEeecc--cCCccchhhhhcceeeEee-cCCeeeEEEccc-ceEEEe-----cccccCCCceEEEeecCe-E
Q 016020 258 EDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV-----SRTEFMTPSAFIFLYENQ-L 327 (396)
Q Consensus 258 etG~~l~s~~~~L~--~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~-~ki~~v-----~~t~~~~PsAFiFly~~q-L 327 (396)
.+|+........-. .-..+.|.+ .+++|++.. .+..|.+||+.+ +++..+ .......|....|.++++ +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 65543322221111 122377777 788899887 889999999998 776532 223445788999999998 4
Q ss_pred EEEE-EcCeEEEEeccc
Q 016020 328 FLTF-RNRTVAVWNFRG 343 (396)
Q Consensus 328 FLTf-s~gti~iWd~~g 343 (396)
|++- .+++|.+||++.
T Consensus 193 ~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEETTTTEEEEEESSC
T ss_pred EEEeCCCCEEEEEEecC
Confidence 5554 348999999953
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.8e-08 Score=95.92 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=110.2
Q ss_pred eEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC-----ceEEEEE
Q 016020 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKI 234 (396)
Q Consensus 160 cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~-----~VqEIki 234 (396)
++.++++++..|+... .|--+.|.+ +|+.++. +.|+.+++||+.+.+..-.+... .|..+.|
T Consensus 2 ~~~~~~~~~~~~~~~~-----------~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFKI-----------HDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCHHHHTCTTTCC-----------CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE
T ss_pred CccccHHHHhCCCCcc-----------cccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEE
Confidence 3556788887776431 233445666 6886654 68999999999999877777653 3899999
Q ss_pred cCCeEEEEEecCC-C------eeeeEEEEeecCcEEEEEEeeccc---CCccchhhhhcceeeEeecCCeeeEEEcccce
Q 016020 235 SPGIMLLIFNRSS-S------HVPLKILSIEDGTVLKVFYHLLHR---NKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (396)
Q Consensus 235 Spg~~Ll~~q~~~-~------~iplkIl~IetG~~l~s~~~~L~~---sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~k 304 (396)
||+--.|++.... . ...+.||++++|+. ..+...-.+ -..+.|.+ .|++|+...+ ..|.+||+.+++
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCc
Confidence 9765544444332 1 25688999999986 333211122 12378888 8999998887 689999999998
Q ss_pred EEEecccccC------------------CCceEEEeecCeEEEEEEc
Q 016020 305 LMEVSRTEFM------------------TPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 305 i~~v~~t~~~------------------~PsAFiFly~~qLFLTfs~ 333 (396)
.+.+...+.. .+.++-|+++++.+++.+.
T Consensus 146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 8876554332 3378999999997776663
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-06 Score=74.06 Aligned_cols=221 Identities=11% Similarity=0.043 Sum_probs=129.0
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh-CCCCCCCcceeecccC
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLK 186 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~-gk~~~~~~LF~~~~l~ 186 (396)
|.-.+||..+++..-+.. +...|.++-++....-|++.+ +. .+ +..+ +.. |+. ..++....-.
T Consensus 22 ~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~----~~--~i--~~~d---~~~~~~~---~~~~~~~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS----EG--LL--YRLS---LAGDPSP---EKVDTGFATI 85 (297)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE----TT--EE--EEEE---SSSCCSC---EECCCTTCCC
T ss_pred eeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc----CC--eE--EEEe---CCCCCCc---eEeccccccc
Confidence 444566767776665554 245677787887666555532 32 22 2222 222 221 1222222122
Q ss_pred CCCeEEeeCCCCcEEEeec--CCCeEEEEec--cCceEEEEecc-CceEEEEEcCCe-EEEEEecCCCeeeeEEEEe--e
Q 016020 187 WPGFVEFDDVNGKVLTYSA--QDSIYKVFDL--KNYTMLYSISD-KHVQEIKISPGI-MLLIFNRSSSHVPLKILSI--E 258 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a--~d~~YrVwdl--knYs~lysIs~-~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~I--e 258 (396)
.+.-+.|.+ +|+.+++.. .++..+||.+ .+.+ ...+.. ..+..+++||+- .|++....... ++||.+ .
T Consensus 86 ~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~l~~~~~~ 161 (297)
T 2ojh_A 86 CNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQV--FDIYSMDID 161 (297)
T ss_dssp BCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTE--EEEEEEETT
T ss_pred cccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCc--eEEEEEECC
Confidence 344578888 788888777 3456667665 4444 444544 568889999654 44434444334 566665 4
Q ss_pred cCcEEEEEEeecccC---CccchhhhhcceeeEee-cCCeeeEEEcc-cceEEEecccccCCCceEEEeecCeEEEEEEc
Q 016020 259 DGTVLKVFYHLLHRN---KKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 259 tG~~l~s~~~~L~~s---k~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~-~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~ 333 (396)
+|+.. .+. .+. ..+.|.+ .+++|++.. .+..++||++. +++.......+...+....|.++++.+++.+.
T Consensus 162 ~~~~~-~~~---~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 162 SGVET-RLT---HGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp TCCEE-ECC---CSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCcce-Ecc---cCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 45442 222 222 2377776 788888766 58899999986 44444444455556677889999987666654
Q ss_pred ------------CeEEEEeccc-ce--eeeecccc
Q 016020 334 ------------RTVAVWNFRG-EL--VTSFEDHL 353 (396)
Q Consensus 334 ------------gti~iWd~~g-eL--~t~fedh~ 353 (396)
+.+.+||.++ ++ +..+.+|.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 271 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ 271 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred CCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence 4699999987 43 44444443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-07 Score=86.90 Aligned_cols=160 Identities=13% Similarity=0.159 Sum_probs=112.1
Q ss_pred CCeEEeeCCCCcEEEeec-CC--CeEEEEeccCceEEEEecc--CceEEEEEcCCeE-EEEEecCCCeeeeEEEEeecCc
Q 016020 188 PGFVEFDDVNGKVLTYSA-QD--SIYKVFDLKNYTMLYSISD--KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a-~d--~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~IetG~ 261 (396)
..-+.|++ +|+.|++.. .+ ..+.+||+.+.+. ..+.. ..+.++.|||+-- |++........-+.+|++.+|+
T Consensus 225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 34678888 788777443 34 4589999998775 45554 5689999997654 4444433455678888999987
Q ss_pred EEEEEEeecccCCccchhhhhcceeeEeecC---CeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C---
Q 016020 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R--- 334 (396)
Q Consensus 262 ~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g--- 334 (396)
... +...-.....+.|.+ .+++|++...+ ..|.+||+.++++..+... . .+.+.-|.++++.+++.++ +
T Consensus 303 ~~~-l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~-~~~~~~~spdg~~l~~~s~~~~~~ 378 (415)
T 2hqs_A 303 PQR-ITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-F-LDETPSLAPNGTMVIYSSSQGMGS 378 (415)
T ss_dssp CEE-CCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-S-SCEEEEECTTSSEEEEEEEETTEE
T ss_pred EEE-EecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEEecCC-C-CcCCeEEcCCCCEEEEEEcCCCcc
Confidence 432 211001112377877 88999887753 6899999999999766443 2 7889999999987666655 4
Q ss_pred eEEEEecccceeeeecccc
Q 016020 335 TVAVWNFRGELVTSFEDHL 353 (396)
Q Consensus 335 ti~iWd~~geL~t~fedh~ 353 (396)
.+.+||++|..+..+..|.
T Consensus 379 ~l~~~d~~g~~~~~l~~~~ 397 (415)
T 2hqs_A 379 VLNLVSTDGRFKARLPATD 397 (415)
T ss_dssp EEEEEETTSCCEEECCCSS
T ss_pred EEEEEECCCCcEEEeeCCC
Confidence 7999999997777776663
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-07 Score=81.05 Aligned_cols=148 Identities=5% Similarity=-0.016 Sum_probs=111.3
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc-C--ceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEEEEeeccc
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K--HVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~--~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~ 272 (396)
++++++..+.++.+++||+.+.+.+..+.. . .+..+.+||+- .+++..... -.+.+|++++|+.+..+.. ++
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--~~i~~~d~~t~~~~~~~~~--~~ 85 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY--GDIYGIDLDTCKNTFHANL--SS 85 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEES--CC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC--CcEEEEeCCCCcEEEEEEc--cc
Confidence 688888889999999999999999888875 3 58999999764 455665443 4578999999999887662 32
Q ss_pred --------CCccchhhhhcceeeEeecC------------CeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEE
Q 016020 273 --------NKKVDFIEQFNEKLLVKQEN------------ENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 273 --------sk~i~FiE~~~ekLLIKQed------------~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFL 329 (396)
-..+.|.+ .|.+|++...+ ..|.+||+.+++..+ +... ...+.+..|.+++++|+
T Consensus 86 ~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYV 163 (349)
T ss_dssp STTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEE
T ss_pred ccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCcEEE
Confidence 24478887 89999999865 899999999955433 2222 22467777999999666
Q ss_pred EEEcCeEEEEeccc-ceeeeeccc
Q 016020 330 TFRNRTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 330 Tfs~gti~iWd~~g-eL~t~fedh 352 (396)
.++.|.+||... +++..+.-+
T Consensus 164 --~~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 164 --AGPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp --ESSSEEEECTTTCCEEEEECST
T ss_pred --ccCcEEEEeCCCCceecccccc
Confidence 466799999965 666666543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-06 Score=76.92 Aligned_cols=224 Identities=10% Similarity=0.101 Sum_probs=148.4
Q ss_pred cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC-------CCCCcc
Q 016020 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-------DSGFAL 179 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~-------~~~~~L 179 (396)
.|.-..+|..||+.+-.+......-.+.|-...+.+ |++ +-. .+ . +.+..+. .|+. ..+.+-
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~--~~-~--~v~~~~~----~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV--AL-H--QVFKLDP----HSKEGPLLILGRSMQPG 136 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEE-EET--TT-T--EEEEECT----TCSSCCSEEESBTTBCC
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEE-EEC--CC-C--EEEEEeC----CCCeEEEEEecccCCCC
Confidence 456677787778777666555555677788876555 433 221 11 1 1222211 1110 000011
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeec-CCCeEEEEeccCceEEEEecc------------CceEEEEEcCC-eEEEEEec
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD------------KHVQEIKISPG-IMLLIFNR 245 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a-~d~~YrVwdlknYs~lysIs~------------~~VqEIkiSpg-~~Ll~~q~ 245 (396)
.....+.+|--+-||+.+|.+...++ .++.+++|| .+.+.+..+.. .....|.++|+ -.|++...
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC
Confidence 11456778999999988999999997 799999999 67888888753 23889999975 55666665
Q ss_pred CCCeeeeEEEEeecCcEEEEEEeecccCC--ccchhh-----hhcceeeEeecCCeeeEEEcccceEEEec---ccccCC
Q 016020 246 SSSHVPLKILSIEDGTVLKVFYHLLHRNK--KVDFIE-----QFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMT 315 (396)
Q Consensus 246 ~~~~iplkIl~IetG~~l~s~~~~L~~sk--~i~FiE-----~~~ekLLIKQed~~L~I~Dv~~~ki~~v~---~t~~~~ 315 (396)
.. --+++|+.++|+.+..+...-+... .+.|.+ ..+...+....+..+.+||+.+++++.+. .+++..
T Consensus 216 ~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~ 293 (329)
T 3fvz_A 216 EN--GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM 293 (329)
T ss_dssp TT--TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS
T ss_pred CC--CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC
Confidence 53 3578999999999887642111001 133333 01111122234558999999999999875 578899
Q ss_pred CceEEEeecCeEEEEEEc-CeEEEEecccc
Q 016020 316 PSAFIFLYENQLFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 316 PsAFiFly~~qLFLTfs~-gti~iWd~~ge 344 (396)
|.+..|.++++||++=+. +.|.+|+.+|.
T Consensus 294 p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 999999999999999876 89999999884
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-07 Score=86.90 Aligned_cols=156 Identities=10% Similarity=0.141 Sum_probs=111.4
Q ss_pred CeEEeeCCCCcEEEeecCCC---eEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcE
Q 016020 189 GFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~---~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-.+.|.+ +|+.+++.+.++ .+++||+++.+.. .+.. ..+..++|||+- .|++........-+.+|++.+|+.
T Consensus 182 ~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 182 MSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred eeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence 4567888 888888888775 9999999998865 3433 678999999754 455455555567799999999986
Q ss_pred EEEEEeecccCC---ccchhhhhcceeeEeec-CC--eeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc---
Q 016020 263 LKVFYHLLHRNK---KVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--- 333 (396)
Q Consensus 263 l~s~~~~L~~sk---~i~FiE~~~ekLLIKQe-d~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--- 333 (396)
.. +. .+.. .+.|.+ .+.+|++... ++ .|.+||+.+++...+.. +...+.+..|.++++.+++.+.
T Consensus 260 ~~-l~---~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 260 RQ-VT---DGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp EE-CC---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSS
T ss_pred Ee-Cc---CCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEec-CCCcccCeEECCCCCEEEEEECcCC
Confidence 32 22 2222 378887 8999998886 44 56667999988766432 3445667889999987766664
Q ss_pred -CeEEEEecccceeeeeccc
Q 016020 334 -RTVAVWNFRGELVTSFEDH 352 (396)
Q Consensus 334 -gti~iWd~~geL~t~fedh 352 (396)
+.|.+||.++.-...+..|
T Consensus 334 ~~~i~~~d~~~~~~~~l~~~ 353 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQVLSST 353 (415)
T ss_dssp CEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEEECCCCCEEEecCC
Confidence 4899999988322334444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-06 Score=77.99 Aligned_cols=152 Identities=12% Similarity=0.194 Sum_probs=103.6
Q ss_pred CCCCeEEeeCCCCc-EEEeecCCCeEEEEeccCce-------E-------EEEec-cCceEEEEEcCCe-EEEEEecCCC
Q 016020 186 KWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYT-------M-------LYSIS-DKHVQEIKISPGI-MLLIFNRSSS 248 (396)
Q Consensus 186 ~~PgfVEFDd~Ngk-Ilt~~a~d~~YrVwdlknYs-------~-------lysIs-~~~VqEIkiSpg~-~Ll~~q~~~~ 248 (396)
.||-.+.|++ +|+ +++.+..++.+++|++..-. + ...+. +.....+.|||+- .|++.....
T Consensus 155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~- 232 (361)
T 3scy_A 155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG- 232 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-
T ss_pred CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC-
Confidence 3567799998 676 66777778999999987543 1 22333 3678899999765 455555443
Q ss_pred eeeeEEEEeecCcEEEEEEeecccC-----CccchhhhhcceeeEeecC--CeeeEEEcc--cceEEE--ecccccCCCc
Q 016020 249 HVPLKILSIEDGTVLKVFYHLLHRN-----KKVDFIEQFNEKLLVKQEN--ENLQILDVR--NAELME--VSRTEFMTPS 317 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~L~~s-----k~i~FiE~~~ekLLIKQed--~~L~I~Dv~--~~ki~~--v~~t~~~~Ps 317 (396)
-.+.+|++.+|+............ ..+.|.+ .+.+|++-..+ ..+.+||+. ++++.. ...+ ...|.
T Consensus 233 -~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~ 309 (361)
T 3scy_A 233 -GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPR 309 (361)
T ss_dssp -CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCC
T ss_pred -CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCc
Confidence 348999999886533222211111 1578888 89999887665 889999995 566433 2333 57899
Q ss_pred eEEEeecCeE-EEEEEc-CeEEEEecc
Q 016020 318 AFIFLYENQL-FLTFRN-RTVAVWNFR 342 (396)
Q Consensus 318 AFiFly~~qL-FLTfs~-gti~iWd~~ 342 (396)
.+.|.++++. +++-++ ++|.+|+.+
T Consensus 310 ~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 310 NFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 9999999984 444433 899997665
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-05 Score=73.59 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=113.6
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe------cc----------CceEEEEEcCCe-EEEEEecCCC
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SD----------KHVQEIKISPGI-MLLIFNRSSS 248 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI------s~----------~~VqEIkiSpg~-~Ll~~q~~~~ 248 (396)
..|..+.+ + ...+++.+..++.+.+|++..-..+-.+ .+ .++..+.+||+- .|++.....
T Consensus 100 ~~p~~~~~-d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~- 176 (361)
T 3scy_A 100 ADPCYLTT-N-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT- 176 (361)
T ss_dssp SCEEEEEE-C-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT-
T ss_pred CCcEEEEE-C-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC-
Confidence 46888888 3 2456777778999999999754333222 11 235789999765 455655443
Q ss_pred eeeeEEEEeecCcE------EEEE----EeecccCC---ccchhhhhcceeeEee-cCCeeeEEEcccceEEE-----ec
Q 016020 249 HVPLKILSIEDGTV------LKVF----YHLLHRNK---KVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME-----VS 309 (396)
Q Consensus 249 ~iplkIl~IetG~~------l~s~----~~~L~~sk---~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~-----v~ 309 (396)
-.+.+|++..++. +... ...++... .+.|.+ .+.+|++-. .++.+.+||+.++++.. ..
T Consensus 177 -~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 177 -DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD 254 (361)
T ss_dssp -TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC
T ss_pred -CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC
Confidence 3578898886542 3211 22222222 277877 888888877 58899999999887743 33
Q ss_pred ccccCCCceEEEeecCe-EEEEEEc--CeEEEEecc---cc--eeeeecc-ccccC-CCCCCCc-EEEcc
Q 016020 310 RTEFMTPSAFIFLYENQ-LFLTFRN--RTVAVWNFR---GE--LVTSFED-HLLWH-PDCNTNN-IYITS 368 (396)
Q Consensus 310 ~t~~~~PsAFiFly~~q-LFLTfs~--gti~iWd~~---ge--L~t~fed-h~l~~-~~c~~n~-~~it~ 368 (396)
..++..|.+..|.++++ ||++-+. ++|.+|+++ |+ .+..+.. ..+.. ...++++ +|++.
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence 44556788999999998 5666665 799999996 44 4444432 11111 1266776 55554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.7e-06 Score=74.60 Aligned_cols=154 Identities=11% Similarity=0.109 Sum_probs=104.9
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEecc-CceEE--EE--ec-cCceEEEEEcCCe-EEEEEecCCCeeeeEEEEe
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTML--YS--IS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~l--ys--Is-~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~I 257 (396)
..+|..+.|++ +|++++.+..++.+++||+. +.+.. -. +. +.....+.+||+- .|++.....+ .+.+|++
T Consensus 140 ~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~--~v~v~~~ 216 (347)
T 3hfq_A 140 GSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS--QIASLKY 216 (347)
T ss_dssp SCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEE
T ss_pred CCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC--EEEEEEe
Confidence 34677899998 77788888889999999999 55432 22 22 2467889999764 4555555433 4677888
Q ss_pred ec--CcEEEEEEeecccC--------CccchhhhhcceeeEe-ecCCeeeEEEcc-cc--eEEEecccccCCCceEEEee
Q 016020 258 ED--GTVLKVFYHLLHRN--------KKVDFIEQFNEKLLVK-QENENLQILDVR-NA--ELMEVSRTEFMTPSAFIFLY 323 (396)
Q Consensus 258 et--G~~l~s~~~~L~~s--------k~i~FiE~~~ekLLIK-Qed~~L~I~Dv~-~~--ki~~v~~t~~~~PsAFiFly 323 (396)
.. |+............ ..+.|.+ .|.+|++- ..+..|.+||+. ++ +.+....++...|..+.|.+
T Consensus 217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp 295 (347)
T 3hfq_A 217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP 295 (347)
T ss_dssp ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT
T ss_pred cCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC
Confidence 84 65432222111111 1277887 88888665 457899999997 33 44445556677899999999
Q ss_pred cCe-EEEEEEc-CeEEEEecc
Q 016020 324 ENQ-LFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 324 ~~q-LFLTfs~-gti~iWd~~ 342 (396)
+++ |+++-++ ++|.+|+.+
T Consensus 296 dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 296 TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEcCCCcEEEEEEe
Confidence 997 5665555 899999554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=93.26 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=138.9
Q ss_pred hhhhhhc-cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeE-ecCCCceeeeEeeehhhhhhCCCCCCC
Q 016020 100 IVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (396)
Q Consensus 100 ii~~L~~-sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~-~sd~~s~L~cr~~~~~~i~~gk~~~~~ 177 (396)
.|+.... .|....|+..+|+..... ..+..-++++.+..+ .++.++.. ..+. ..+-..++.. ..|+ ..
T Consensus 35 ~la~~s~~~g~~~lw~~~~g~~~~lt-~~~~~~~~~~~~spd--~~l~~~~~~~g~~--~~~l~~~~~~--~~g~---~~ 104 (582)
T 3o4h_A 35 KLLVVGFSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVG--RVILVRDVSKGAE--QHALFKVNTS--RPGE---EQ 104 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEECC-SSCCSEECEECTTCS--EEEEEEECSTTSC--CEEEEEEETT--STTC---CE
T ss_pred eEEEEEccCCceeEEEEcCCCcEeee-cccccccccccCCCC--eEEEEeccCCCCc--ceEEEEEecc--CCCc---cc
Confidence 3333333 778888887666655443 333346778888753 55554422 1222 1222222210 0111 11
Q ss_pred cceeecccCCCCeEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEE-Ee-cCCCeeeeEE
Q 016020 178 ALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLI-FN-RSSSHVPLKI 254 (396)
Q Consensus 178 ~LF~~~~l~~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~-~q-~~~~~iplkI 254 (396)
.|....... ...|.+- ++.+++....+..+ +||+.+.+..--..... .++.+||+--.++ .. ...+..-+.+
T Consensus 105 ~l~~~~~~~---~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~ 179 (582)
T 3o4h_A 105 RLEAVKPMR---ILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFT 179 (582)
T ss_dssp ECTTSCSBE---EEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred cccCCCCce---eeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence 121111111 2344431 34455555555555 99999987433333333 8999995443333 32 2234466999
Q ss_pred EEeecCcEEEEEEeecccC---CccchhhhhcceeeEeecCC--eeeEEEcccceEEEecccccCCCceEE--------E
Q 016020 255 LSIEDGTVLKVFYHLLHRN---KKVDFIEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEFMTPSAFI--------F 321 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~s---k~i~FiE~~~ekLLIKQed~--~L~I~Dv~~~ki~~v~~t~~~~PsAFi--------F 321 (396)
||+++|+... +. .+. ..+.|.+ .|..|+....++ .|.+||+.+++.. +...+...+.+.. |
T Consensus 180 ~d~~~g~~~~-l~---~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 180 SNLSSGGLRV-FD---SGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp EETTTCCCEE-EC---CSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred EcCCCCCceE-ee---cCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE
Confidence 9999998653 22 222 3488988 999999777777 8999999999998 7777766777777 9
Q ss_pred eecCeEEEEEEc-CeEEEEecccceeeeecc
Q 016020 322 LYENQLFLTFRN-RTVAVWNFRGELVTSFED 351 (396)
Q Consensus 322 ly~~qLFLTfs~-gti~iWd~~geL~t~fed 351 (396)
+++++++++.+. |++.+|+. |+++....+
T Consensus 254 spdg~~~~~~~~~g~~~l~~~-g~~~~~~~~ 283 (582)
T 3o4h_A 254 LPDGRLAVVARREGRSAVFID-GERVEAPQG 283 (582)
T ss_dssp CTTSCEEEEEEETTEEEEEET-TEEECCCSS
T ss_pred cCCCcEEEEEEcCCcEEEEEE-CCeeccCCC
Confidence 999988777765 99999999 876544443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-06 Score=75.77 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=154.8
Q ss_pred EEEeeccc-hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEe-EecCCCceeeeEeeehhhhh
Q 016020 92 IEIVAARD-IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSV-YASDNFSSLKCRSTKIEYIR 169 (396)
Q Consensus 92 ~EIv~a~d-ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv-~~sd~~s~L~cr~~~~~~i~ 169 (396)
..|....+ +.++-..+|.-.++|..|++.+-.+- ...-.+.|.....+ .+ .||. + + ..+ ..++.+
T Consensus 47 ~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g-~l-yv~~~~---~-~~v--~~iD~~--- 113 (328)
T 3dsm_A 47 QSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDE-KA-YVTQIW---D-YRI--FIINPK--- 113 (328)
T ss_dssp EEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETT-EE-EEEEBS---C-SEE--EEEETT---
T ss_pred eEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCC-eE-EEEECC---C-CeE--EEEECC---
Confidence 34444434 44444457889999999999887773 23446677775444 43 4333 2 1 111 122111
Q ss_pred hCCCCCCCcce-eecccCCCCeEEeeCCCCcEEEeec-CCCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEEec
Q 016020 170 RGKPDSGFALF-ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNR 245 (396)
Q Consensus 170 ~gk~~~~~~LF-~~~~l~~PgfVEFDd~NgkIlt~~a-~d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~q~ 245 (396)
.+++....++= ......+|.-+.+| ++++...+. .++.+.|||+++.+.+-+|.- .....|.++| |-+++....
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCC
T ss_pred CCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECC
Confidence 11110000000 01122378888885 588888876 489999999999999888875 6678899997 554433333
Q ss_pred CCC-------eeeeEEEEeecCcEEEEEEeecc-cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEe--cccccCC
Q 016020 246 SSS-------HVPLKILSIEDGTVLKVFYHLLH-RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEFMT 315 (396)
Q Consensus 246 ~~~-------~iplkIl~IetG~~l~s~~~~L~-~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v--~~t~~~~ 315 (396)
... .-.+.++|.++|+....+...-. +-..+.|.+ .+..|++-.. .+.+||..++++... .......
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc
Confidence 211 14588999999998877652111 223477766 6788888654 899999999987432 1222567
Q ss_pred CceEEEee-cCeEEEEE----E-cCeEEEEecccceeeeec
Q 016020 316 PSAFIFLY-ENQLFLTF----R-NRTVAVWNFRGELVTSFE 350 (396)
Q Consensus 316 PsAFiFly-~~qLFLTf----s-~gti~iWd~~geL~t~fe 350 (396)
|....+.+ ++.||++- + +++|.+||.+|+++.+++
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 99999997 89999996 3 599999999999888775
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-07 Score=76.12 Aligned_cols=174 Identities=10% Similarity=0.075 Sum_probs=110.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccC-ceEEEEecc---CceEEEEEcCCeEEEEEecC--CCeeeeEEEEeecCc
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD---KHVQEIKISPGIMLLIFNRS--SSHVPLKILSIEDGT 261 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn-Ys~lysIs~---~~VqEIkiSpg~~Ll~~q~~--~~~iplkIl~IetG~ 261 (396)
..-+.|++ +|+.+++.. ++.+++||+.+ .+....... ..+..+++||+--.+++... ....-+.++++.+|+
T Consensus 44 v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 44 FEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp CEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred eEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence 34567887 788888765 88999999999 665444332 56788999977655555552 234455555555665
Q ss_pred EEEEEEeecccCCccchhhhhcceee-EeecCCeeeEEEc--ccceEEEecccccCCCceEEEeecCeEEEEEE--cCeE
Q 016020 262 VLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTV 336 (396)
Q Consensus 262 ~l~s~~~~L~~sk~i~FiE~~~ekLL-IKQed~~L~I~Dv--~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs--~gti 336 (396)
. ..+.. ......+.|.+ .+.+|+ ....+..++||++ .+++...+ ..+...+..+.|.++++.++..+ ++.+
T Consensus 122 ~-~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 197 (297)
T 2ojh_A 122 P-RLMTK-NLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRL-THGEGRNDGPDYSPDGRWIYFNSSRTGQM 197 (297)
T ss_dssp C-EECCS-SSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEEC-CCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred e-EEeec-CCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEc-ccCCCccccceECCCCCEEEEEecCCCCc
Confidence 3 22221 01112256766 788887 6778899999996 44555443 44556788899999998655544 5899
Q ss_pred EEEecc--cceeeeeccccccC---CCCCCCcEEEc
Q 016020 337 AVWNFR--GELVTSFEDHLLWH---PDCNTNNIYIT 367 (396)
Q Consensus 337 ~iWd~~--geL~t~fedh~l~~---~~c~~n~~~it 367 (396)
.+|+++ +..+..+..|.... ...++++.+++
T Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 198 QIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred cEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 999986 44555555443211 11456654433
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-06 Score=79.23 Aligned_cols=177 Identities=11% Similarity=0.076 Sum_probs=118.2
Q ss_pred cCCCCeEEeeCCCCcEE-EeecCCCeEEEEecc-CceE--EEEec----cCceEEEEEcCCe-EEEEEecCCCeeeeEEE
Q 016020 185 LKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLK-NYTM--LYSIS----DKHVQEIKISPGI-MLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIl-t~~a~d~~YrVwdlk-nYs~--lysIs----~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl 255 (396)
-.+|..+.|++ +|+.+ +.+..++.+++||+. +.+. +..+. +..+..+.|||+- .|.+.....+ .+.+|
T Consensus 144 ~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~--~v~v~ 220 (365)
T 1jof_A 144 NTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN--RICEY 220 (365)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT--EEEEE
T ss_pred CCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC--eEEEE
Confidence 35788899998 67644 445567899999998 6653 44553 4679999999754 5555554434 45677
Q ss_pred Eee--cCcEEE---EEEeeccc--------------CCccc-hhhhhcceeeEeecCC------eeeEEEcc-cceEEEe
Q 016020 256 SIE--DGTVLK---VFYHLLHR--------------NKKVD-FIEQFNEKLLVKQENE------NLQILDVR-NAELMEV 308 (396)
Q Consensus 256 ~Ie--tG~~l~---s~~~~L~~--------------sk~i~-FiE~~~ekLLIKQed~------~L~I~Dv~-~~ki~~v 308 (396)
++. +|+... .+. .++. -..+. |.+ .|.+|++-..+. .|++||+. ++++..+
T Consensus 221 ~~~~~~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~ 298 (365)
T 1jof_A 221 VIDPATHMPVYTHHSFP-LIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ 298 (365)
T ss_dssp EECTTTCCEEEEEEEEE-SSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred EEeCCCCcEEEccceEE-cCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe
Confidence 664 687543 122 2221 12377 665 899998877544 79999996 7887763
Q ss_pred ---cccccCCCceEEEee---cCe-EEEEEEc-CeEEEEecccceeeeeccccccCCCCCCCcEEE
Q 016020 309 ---SRTEFMTPSAFIFLY---ENQ-LFLTFRN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI 366 (396)
Q Consensus 309 ---~~t~~~~PsAFiFly---~~q-LFLTfs~-gti~iWd~~geL~t~fedh~l~~~~c~~n~~~i 366 (396)
..++...|.++.|.+ +++ |+++-.+ ++|.+|+.+++..+....-....|-|..|-+|+
T Consensus 299 ~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 364 (365)
T 1jof_A 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWY 364 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEE
T ss_pred eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhCceeeEEEcCCCcceeeeEec
Confidence 334566799999999 565 4555444 899999999864443333334456788887765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-07 Score=89.21 Aligned_cols=174 Identities=11% Similarity=0.128 Sum_probs=120.2
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
.-+.|++ +|+.|++.+. +.+++||+.+.. .+..+.. ..+..++|||+--.+++.... -+.+|++.+|+...
T Consensus 112 ~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~---~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 112 VDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR---NLWVIDLASGRQMQ 186 (741)
T ss_dssp CCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT---EEEEEETTTTEEEE
T ss_pred ceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC---cEEEEecCCCCEEE
Confidence 4567888 7887777665 999999999872 3334444 679999999876555555442 68999999988764
Q ss_pred EEEeeccc------------------CCccchhhhhcceeeEeecCC---------------------------------
Q 016020 265 VFYHLLHR------------------NKKVDFIEQFNEKLLVKQENE--------------------------------- 293 (396)
Q Consensus 265 s~~~~L~~------------------sk~i~FiE~~~ekLLIKQed~--------------------------------- 293 (396)
.+.. +. ...+.|.+ .|.+|++-..|+
T Consensus 187 ~~~~--~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 187 LTAD--GSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp CCCC--CCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred eccC--CccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 3321 11 13478888 899999987655
Q ss_pred eeeEEEccc-ceEEEeccc--ccCCCceEEEeecCeEEEEEE------cCeEEEEeccc-ceeeeecccc-ccC------
Q 016020 294 NLQILDVRN-AELMEVSRT--EFMTPSAFIFLYENQLFLTFR------NRTVAVWNFRG-ELVTSFEDHL-LWH------ 356 (396)
Q Consensus 294 ~L~I~Dv~~-~ki~~v~~t--~~~~PsAFiFly~~qLFLTfs------~gti~iWd~~g-eL~t~fedh~-l~~------ 356 (396)
.|.+||+.+ +++..+... +...+....| ++++.+++.+ ++.|.+||.++ ++...++.|. .|.
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 789999999 988776543 5566778889 9988766554 35799999987 5555554443 221
Q ss_pred CCCCCCcEEEccCCc
Q 016020 357 PDCNTNNIYITSDQD 371 (396)
Q Consensus 357 ~~c~~n~~~it~~qd 371 (396)
...++++++++++.|
T Consensus 343 ~~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 343 RFLDDGSILWSSERT 357 (741)
T ss_dssp EECTTSCEEEEECTT
T ss_pred EECCCCeEEEEecCC
Confidence 115666666665554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.52 E-value=7.9e-07 Score=88.29 Aligned_cols=158 Identities=10% Similarity=0.006 Sum_probs=109.4
Q ss_pred CCCeEEeeCCCCcEEEeecCC---------CeEEEEeccCceEEEEecc-----CceEEEEEcCCeEEEEEecCCCeeee
Q 016020 187 WPGFVEFDDVNGKVLTYSAQD---------SIYKVFDLKNYTMLYSISD-----KHVQEIKISPGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d---------~~YrVwdlknYs~lysIs~-----~~VqEIkiSpg~~Ll~~q~~~~~ipl 252 (396)
+...+.|.+ +|+.|++...+ +.+.+||+.+.+. ..+.. ..+..++|||+--.+++... --+
T Consensus 62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~---~~i 136 (723)
T 1xfd_A 62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE---NNI 136 (723)
T ss_dssp TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET---TEE
T ss_pred ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC---CeE
Confidence 356788988 78888877664 7888999999875 44443 12889999976533344333 268
Q ss_pred EEEEeecCcEEEEEEeecc------------------cCCccchhhhhcceeeEeecCC---------------------
Q 016020 253 KILSIEDGTVLKVFYHLLH------------------RNKKVDFIEQFNEKLLVKQENE--------------------- 293 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~------------------~sk~i~FiE~~~ekLLIKQed~--------------------- 293 (396)
.+|++.+|+....+..--. +...+.|.+ .|++|+....++
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence 9999999988664431000 113478888 899999887553
Q ss_pred -------------eeeEEEcccceEEEecccc------cCCCceEEEeecCeEEEEEEc-----CeEEEEeccc-ceeee
Q 016020 294 -------------NLQILDVRNAELMEVSRTE------FMTPSAFIFLYENQLFLTFRN-----RTVAVWNFRG-ELVTS 348 (396)
Q Consensus 294 -------------~L~I~Dv~~~ki~~v~~t~------~~~PsAFiFly~~qLFLTfs~-----gti~iWd~~g-eL~t~ 348 (396)
.|.+||+.+++.......+ .....+..|+++++++++.++ ..|.+||+.+ ++...
T Consensus 216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 7999999999863333222 344567889999998767654 4799999976 55554
Q ss_pred ec
Q 016020 349 FE 350 (396)
Q Consensus 349 fe 350 (396)
++
T Consensus 296 ~~ 297 (723)
T 1xfd_A 296 HE 297 (723)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=70.36 Aligned_cols=186 Identities=12% Similarity=0.218 Sum_probs=127.1
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--------CceEEEEE-cCCeEEEEEecCCCeeeeE
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKI-SPGIMLLIFNRSSSHVPLK 253 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--------~~VqEIki-Spg~~Ll~~q~~~~~iplk 253 (396)
..+..|.-+-+|+ +|++...+..++.+.+||.. .+.+..+.. ..+..|.+ .++-.|++.... ..--+.
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-PTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-GGCEEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-CCCEEE
Confidence 4567899999998 68899888889999999987 566666643 46889999 344444444421 123578
Q ss_pred EEEeecCcEEEEEEeecccC---CccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEE
Q 016020 254 ILSIEDGTVLKVFYHLLHRN---KKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLF 328 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~s---k~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLF 328 (396)
+|+ .+|+.+..+.. ... ..+.|.+ .+. |++- ..+..|.+||.....+..... .+...|.+..|.+++++|
T Consensus 104 ~~d-~~g~~~~~~~~--~~~~~~~~i~~~~-~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGA--TILQHPRGVTVDN-KGR-IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEC-TTSCEEEEECT--TTCSCEEEEEECT-TSC-EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEC-CCCcEEEEecC--ccCCCceEEEEeC-CCC-EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 888 78888776541 221 2255555 454 6655 467889999965443333322 456789999999999999
Q ss_pred EEEE-cCeEEEEecccceeeeecccc-ccCCC----CCCCcEEEccCCc--EEEEe
Q 016020 329 LTFR-NRTVAVWNFRGELVTSFEDHL-LWHPD----CNTNNIYITSDQD--LIISY 376 (396)
Q Consensus 329 LTfs-~gti~iWd~~geL~t~fedh~-l~~~~----c~~n~~~it~~qd--~ii~~ 376 (396)
++-+ ++.|.+||.+|+.+..+..+- +..|. -+++++|++...+ -|..|
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred EEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 9876 489999999998777664431 12222 4578889887654 45444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-05 Score=69.76 Aligned_cols=180 Identities=11% Similarity=0.206 Sum_probs=122.8
Q ss_pred ccCCCCeEEeeCCCCcEEEeecC-CCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~-d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet 259 (396)
.+..|--+-||+.+|++.+.+.. ++.+++|| .+.+.+..+.. ..+..|.++|+=.+++..... -.+.+|+ .+
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~~-~~ 150 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--MRVIIFD-QN 150 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--TEEEEEC-TT
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCC--CEEEEEc-CC
Confidence 45678889997668998887754 88999999 67777777753 578999998654555655442 3567788 46
Q ss_pred CcEEEEEEee--cccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-cccCCCceEEEeecCeEEEEEEc-C-
Q 016020 260 GTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFRN-R- 334 (396)
Q Consensus 260 G~~l~s~~~~--L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~qLFLTfs~-g- 334 (396)
|+.+..+... +..-..|.|-+ .+..++....+..|.+||.....+..+.. .+...|.+..|.++++||++-+. +
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 7777665421 01112255555 45544444678899999985544444432 33578999999999999999876 4
Q ss_pred eEEEEecccceeeeeccccccC-CC----CCCCcEEEcc
Q 016020 335 TVAVWNFRGELVTSFEDHLLWH-PD----CNTNNIYITS 368 (396)
Q Consensus 335 ti~iWd~~geL~t~fedh~l~~-~~----c~~n~~~it~ 368 (396)
.|.+||.+|+.+..+..+.... |. .+++++|+|.
T Consensus 230 ~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 230 NLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp EEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC
Confidence 9999999998777776654321 11 3567788774
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=86.67 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=108.1
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec-----
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED----- 259 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet----- 259 (396)
..+..+.|++- ++++.. .++.+++||+.+.+....... ..+..++|||+--.+++... --+.+|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~---~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRN---HNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEET---TEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEEC---CeEEEEecCcccccC
Confidence 45778999985 666654 469999999999876544433 67899999976544444332 4689999999
Q ss_pred CcEEEEEEeecccC----------------CccchhhhhcceeeEee---------------------------------
Q 016020 260 GTVLKVFYHLLHRN----------------KKVDFIEQFNEKLLVKQ--------------------------------- 290 (396)
Q Consensus 260 G~~l~s~~~~L~~s----------------k~i~FiE~~~ekLLIKQ--------------------------------- 290 (396)
|+....+.. +.. ..+.|.+ .|.+|++.+
T Consensus 156 g~~~~~~~~--~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 156 SRAIAVTID--GTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CCCEESCSC--CBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred CCcEEeccC--CCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 876643221 222 4577888 899999987
Q ss_pred cCCeeeEEEcccceEEEecc--cccCCCceEEEeecCeEEEE-EEcC-----eEEEEeccc
Q 016020 291 ENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLT-FRNR-----TVAVWNFRG 343 (396)
Q Consensus 291 ed~~L~I~Dv~~~ki~~v~~--t~~~~PsAFiFly~~qLFLT-fs~g-----ti~iWd~~g 343 (396)
.+..|.+||+.+++...+.. .+...+..+.|+++++.+++ -.++ +|.+||..+
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 34679999999999877653 34456788999999985544 4455 999999976
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=92.72 Aligned_cols=177 Identities=13% Similarity=0.163 Sum_probs=118.8
Q ss_pred CCeEEeeCCCCcEEEeecC---------CCeEEEEeccCceEE--EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQ---------DSIYKVFDLKNYTML--YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~---------d~~YrVwdlknYs~l--ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~ 256 (396)
..-+.|.+ +|+.|++.+. ++.+++||+.+.+.+ ..+. ..+..++|||+--.+++... --+.+|+
T Consensus 62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~~---~~i~~~~ 136 (719)
T 1z68_A 62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQYLCWSPVGSKLAYVYQ---NNIYLKQ 136 (719)
T ss_dssp CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBCCEEECSSTTCEEEEET---TEEEEES
T ss_pred eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccccceECCCCCEEEEEEC---CeEEEEe
Confidence 34677887 8888887766 789999999998863 4454 57899999986544455443 3799999
Q ss_pred eecCcEEEEEEee------------------cccCCccchhhhhcceeeEeecCC-------------------------
Q 016020 257 IEDGTVLKVFYHL------------------LHRNKKVDFIEQFNEKLLVKQENE------------------------- 293 (396)
Q Consensus 257 IetG~~l~s~~~~------------------L~~sk~i~FiE~~~ekLLIKQed~------------------------- 293 (396)
+.+|+...-+..- +.+...+.|.+ .|++|+....|+
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 9999875422100 01113588888 899999877542
Q ss_pred ---------eeeEEEcccceEE---Eecc-----cccCCCceEEEeecCeEEEEEEcC-----eEEEEe----ccc-cee
Q 016020 294 ---------NLQILDVRNAELM---EVSR-----TEFMTPSAFIFLYENQLFLTFRNR-----TVAVWN----FRG-ELV 346 (396)
Q Consensus 294 ---------~L~I~Dv~~~ki~---~v~~-----t~~~~PsAFiFly~~qLFLTfs~g-----ti~iWd----~~g-eL~ 346 (396)
.|.+||+.+++.+ .+.. ++........|++++++.++..++ .|.+|| ..+ +..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999998863 4422 344455778899999987776553 378888 554 555
Q ss_pred eee----ccccccCC--------CCCCCc--EEEccCC
Q 016020 347 TSF----EDHLLWHP--------DCNTNN--IYITSDQ 370 (396)
Q Consensus 347 t~f----edh~l~~~--------~c~~n~--~~it~~q 370 (396)
..+ +.|--|.. ..++++ +|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 545 45555543 256666 4444433
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-06 Score=82.80 Aligned_cols=171 Identities=8% Similarity=0.067 Sum_probs=106.4
Q ss_pred EEeeCCCCcEEEeecC-CCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecC-CCeeeeEEEEeec---CcE
Q 016020 191 VEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRS-SSHVPLKILSIED---GTV 262 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~-d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~-~~~iplkIl~Iet---G~~ 262 (396)
|-|.+ .|+.||+.+. |+.++||++.+.+ ...+.. ..+..+.+||+ .+++.... ...-...||.+.. |+.
T Consensus 27 ~~~~~-DG~~la~~s~~~g~~~lw~~~~g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 27 LQGVV-DGDKLLVVGFSEGSVNAYLYDGGE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp EEEEE-TTTEEEEEEEETTEEEEEEEETTE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred eecCC-CCCeEEEEEccCCceeEEEEcCCC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc
Confidence 45666 7899998777 9999999996655 455654 36899999999 55444432 2333456666554 433
Q ss_pred EEEEEeecccCCccchhhhhcce-eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-----CeE
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-----RTV 336 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ek-LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-----gti 336 (396)
. .+.. .+...-..|.+ .++. +++...+..+.|||+.++++..+..... .++.|+++++..++.++ ++|
T Consensus 104 ~-~l~~-~~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i 177 (582)
T 3o4h_A 104 Q-RLEA-VKPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSL 177 (582)
T ss_dssp E-ECTT-SCSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred c-cccC-CCCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEE
Confidence 3 2110 01111245555 5554 3444455556699999999888765443 78999999998775554 579
Q ss_pred EEEeccc-ceeeeeccccccC---CCCCCCcEEEccCCc
Q 016020 337 AVWNFRG-ELVTSFEDHLLWH---PDCNTNNIYITSDQD 371 (396)
Q Consensus 337 ~iWd~~g-eL~t~fedh~l~~---~~c~~n~~~it~~qd 371 (396)
.+||+++ ++. .+.+|.-+. ...||++.+.+++.|
T Consensus 178 ~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~ 215 (582)
T 3o4h_A 178 FTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETA 215 (582)
T ss_dssp EEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred EEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCC
Confidence 9999876 433 444443221 126777766555544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-06 Score=84.11 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=87.3
Q ss_pred CCCCCCCcceeeccc---CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE-EEecc-------------------C
Q 016020 171 GKPDSGFALFESESL---KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISD-------------------K 227 (396)
Q Consensus 171 gk~~~~~~LF~~~~l---~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l-ysIs~-------------------~ 227 (396)
|.+-.|-.++.+..- .-|.+. |.-+++...++ + +||+++.+.+ ..+.+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~w~------g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 82 (706)
T 2z3z_A 11 GSLMPGGKEFYNFYPEYVVGLQWM------GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAF 82 (706)
T ss_dssp -----------------CTTCEEE------TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------C
T ss_pred ccccCCcccccccccccCCCCcCc------CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcccccccc
Confidence 444444445555443 334555 33455555677 6 9999999773 33322 3
Q ss_pred ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc-----
Q 016020 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN----- 302 (396)
Q Consensus 228 ~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~----- 302 (396)
.|..+.+||+-.+++.. . -.+.+||+.+|+......+ -..-..+.|.+ .|++|+.- .+..|.+||+.+
T Consensus 83 ~v~~~~~spd~~~~~~~-~---~~i~~~d~~~~~~~~l~~~-~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFT-Q---GGLVGFDMLARKVTYLFDT-NEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCEEEEETTTTEEEEEE-T---TEEEEEETTTTEEEEEECC-TTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred CceeEEECCCCeEEEEE-C---CEEEEEECCCCceEEccCC-cccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccC
Confidence 69999999984444442 2 6789999999976554331 11223488888 89999984 678999999999
Q ss_pred ceEEEecccccC--------------CCceEEEeecCeEEEEEE
Q 016020 303 AELMEVSRTEFM--------------TPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 303 ~ki~~v~~t~~~--------------~PsAFiFly~~qLFLTfs 332 (396)
++...+...... .+.++.|+++++.+++.+
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence 888875444433 258999999999877765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=87.87 Aligned_cols=155 Identities=11% Similarity=0.094 Sum_probs=105.1
Q ss_pred eehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC-----ceEEEEEcCC
Q 016020 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----HVQEIKISPG 237 (396)
Q Consensus 163 ~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~-----~VqEIkiSpg 237 (396)
+++++|-.++.... .| -+.|.+ +|++++.+ .|+.+++||+.+.+...-+... .+..+++||+
T Consensus 4 ~~~~~~~~~~~~~~----------~~-~~~~s~-dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 4 LTLKDILNGTFSYK----------TF-FPNWIS-GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCHHHHHHTTTCCC----------CC-CCEESS-SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT
T ss_pred ccHHHHhcCcccCC----------CC-ccEECC-CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC
Confidence 45677776653211 12 345665 56666544 6999999999999977666552 3899999976
Q ss_pred eEEEEEecC-------CCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc
Q 016020 238 IMLLIFNRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 238 ~~Ll~~q~~-------~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
--.|++... ...-.+.||++++|+.+....+ -..-..+.|.+ .|++|+.-. +..|.+||+.+++...+..
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEec
Confidence 554444433 2257899999999987321111 12234478888 899999886 5699999999998877543
Q ss_pred ccc------------------CCCceEEEeecCeEEEEEEc
Q 016020 311 TEF------------------MTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 311 t~~------------------~~PsAFiFly~~qLFLTfs~ 333 (396)
... ....++-|+++++.+++.+.
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence 221 12258999999988776664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=74.11 Aligned_cols=180 Identities=7% Similarity=0.011 Sum_probs=128.4
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEeccC---ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK---HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~~---~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
|++++..+.++.+.+||.++.+.+.++... .+.++.++|+=.+++.. . --+..||. +|+.+-.+.. +...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~-~---~~V~~~d~-~G~~~W~~~~--~~~~ 77 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY-S---KGAKMITR-DGRELWNIAA--PAGC 77 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC-B---SEEEEECT-TSCEEEEEEC--CTTC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC-C---CCEEEECC-CCCEEEEEcC--CCCc
Confidence 688999999999999999999999999874 58999999776666632 2 23788998 8999988873 2111
Q ss_pred ---ccchhhhhcceeeEeec-CCeeeEEEcccceEEE-ec-----ccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 275 ---KVDFIEQFNEKLLVKQE-NENLQILDVRNAELME-VS-----RTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 275 ---~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~ki~~-v~-----~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
.+++++ .|..|+.-.. +..+..+|- +++++. .. ......|...-++++++++++.+. +.|..||.+|
T Consensus 78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 78 EMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 256666 6777777666 778888885 666554 22 123356666778899999988875 8999999999
Q ss_pred ceeeeecccc-c-cCCCCCCCcEEEccCCc-EEEEeccCCCCCccc
Q 016020 344 ELVTSFEDHL-L-WHPDCNTNNIYITSDQD-LIISYCKAEPEDQWM 386 (396)
Q Consensus 344 eL~t~fedh~-l-~~~~c~~n~~~it~~qd-~ii~~~~~~~~~~~~ 386 (396)
+++-.+..+. + -.+--++++++|+...+ -|+.+=...+.--|.
T Consensus 156 ~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 156 QLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred CEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 9888777542 1 12335666777655443 566665554555454
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-06 Score=84.57 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=101.2
Q ss_pred cCCCCeEEeeCCCCcEEEeecC-CC-----eEEEEeccCceEEEEecc--------------------------CceEEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQ-DS-----IYKVFDLKNYTMLYSISD--------------------------KHVQEI 232 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~-d~-----~YrVwdlknYs~lysIs~--------------------------~~VqEI 232 (396)
...+..+.|.+ +|+.|++.+. |+ .+++||+.+.+..-.+.. ..|..+
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 44567788988 8998888777 87 999999999986655543 237899
Q ss_pred EEcCCeEEEEEecCCCeeeeEEEEeecC---cEEEEEEeecccC---CccchhhhhcceeeEeecCCeeeEEEcccceEE
Q 016020 233 KISPGIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLLHRN---KKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (396)
Q Consensus 233 kiSpg~~Ll~~q~~~~~iplkIl~IetG---~~l~s~~~~L~~s---k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~ 306 (396)
.|||+--.|++... -.+.+|++.+| +.. .+. .+. ..+.|.+ .|++|+...++ .|.+||+.+++..
T Consensus 115 ~~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~-~l~---~~~~~~~~~~~SP-DG~~la~~~~~-~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG---GELYLYDLKQEGKAAVR-QLT---HGEGFATDAKLSP-KGGFVSFIRGR-NLWVIDLASGRQM 185 (741)
T ss_dssp EECTTSSEEEEEET---TEEEEEESSSCSTTSCC-BCC---CSSSCEEEEEECT-TSSEEEEEETT-EEEEEETTTTEEE
T ss_pred EECCCCCEEEEEeC---CcEEEEECCCCCcceEE-Ecc---cCCcccccccCCC-CCCEEEEEeCC-cEEEEecCCCCEE
Confidence 99977544444443 57889999999 432 222 222 2378888 89999988754 8999999999988
Q ss_pred EecccccC----------------CCceEEEeecCeEEEEEEc
Q 016020 307 EVSRTEFM----------------TPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 307 ~v~~t~~~----------------~PsAFiFly~~qLFLTfs~ 333 (396)
.+...+.. .+.++.|+++++.+++.+.
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence 87554432 2588999999986665543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.2e-06 Score=76.21 Aligned_cols=184 Identities=13% Similarity=0.203 Sum_probs=122.2
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEecc-----------CceEEEEEcC-CeEEEEEec-CCC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD-----------KHVQEIKISP-GIMLLIFNR-SSS 248 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs~-----------~~VqEIkiSp-g~~Ll~~q~-~~~ 248 (396)
..+..|-.+-||+ +|++...+..++.+++||..+-. .+..+.. .....|.++| +-.|++... .
T Consensus 88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-- 164 (329)
T 3fvz_A 88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-- 164 (329)
T ss_dssp TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS--
T ss_pred CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC--
Confidence 4567899999997 89999999999999999986543 6677632 3688999997 555556653 3
Q ss_pred eeeeEEEEeecCcEEEEEEee----------cccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec--ccccCCC
Q 016020 249 HVPLKILSIEDGTVLKVFYHL----------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTP 316 (396)
Q Consensus 249 ~iplkIl~IetG~~l~s~~~~----------L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~--~t~~~~P 316 (396)
.--+.+|+ .+|+.+..+... +..-..|.|-+..+..++....+..|++||..+++++... ......|
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV 243 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence 23567888 788888776421 1111236666533555555567889999999988888754 3344556
Q ss_pred ceEEEee------cCeEEEEEEc-CeEEEEecc-cceeeeec---cccccCCC----CCCCcEEEccCCc
Q 016020 317 SAFIFLY------ENQLFLTFRN-RTVAVWNFR-GELVTSFE---DHLLWHPD----CNTNNIYITSDQD 371 (396)
Q Consensus 317 sAFiFly------~~qLFLTfs~-gti~iWd~~-geL~t~fe---dh~l~~~~----c~~n~~~it~~qd 371 (396)
.+..|.+ +++++++=+. ++|.+||.. |+++..+. .+..+ |. .+++++|||...+
T Consensus 244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM-PHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS-EEEEEECTTSEEEEEESSS
T ss_pred ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC-eeEEEECCCCCEEEEECCC
Confidence 6666666 4444444333 489999955 58888874 33322 22 4566777765443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-05 Score=70.09 Aligned_cols=181 Identities=8% Similarity=-0.006 Sum_probs=120.6
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc------CceEEEEEcCCeEEEEEecCCCe----------
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KHVQEIKISPGIMLLIFNRSSSH---------- 249 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~------~~VqEIkiSpg~~Ll~~q~~~~~---------- 249 (396)
..|--+.||+ +|++++....++.+.+||.++.+...-... ..+.++.++|+=.+++..+....
T Consensus 69 ~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 69 HHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp SSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 4577889998 889988888888999999988875443321 24567889865555564321000
Q ss_pred ---eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcc-cceE---EEecccccCCCceEEEe
Q 016020 250 ---VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL---MEVSRTEFMTPSAFIFL 322 (396)
Q Consensus 250 ---iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~-~~ki---~~v~~t~~~~PsAFiFl 322 (396)
-.-.||.+.....+..+.-.+....-+.|.+ .+..|+....+..|.+||+. ++++ .++.......|....|.
T Consensus 148 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d 226 (296)
T 3e5z_A 148 MELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD 226 (296)
T ss_dssp CCSSSCEEEEECTTSCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB
T ss_pred ccCCCcEEEEECCCCCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC
Confidence 0125666655322332221122223477766 77777777788999999997 6666 33334466778999999
Q ss_pred ecCeEEEEEEcCeEEEEecccceeeeeccccccCCC----CCC-CcEEEccCC
Q 016020 323 YENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD----CNT-NNIYITSDQ 370 (396)
Q Consensus 323 y~~qLFLTfs~gti~iWd~~geL~t~fedh~l~~~~----c~~-n~~~it~~q 370 (396)
++++|+++- ++.|.+||.+|+++..+..+.. ..+ -++ +.+|||+..
T Consensus 227 ~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 227 AGGLIWASA-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp TTSCEEEEE-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred CCCCEEEEc-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence 999999998 9999999999998887776554 222 123 257887654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00078 Score=63.43 Aligned_cols=228 Identities=11% Similarity=0.096 Sum_probs=130.0
Q ss_pred cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCce---eeeEeeehhhhhhCCCCCCCcceeec
Q 016020 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS---LKCRSTKIEYIRRGKPDSGFALFESE 183 (396)
Q Consensus 107 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~---L~cr~~~~~~i~~gk~~~~~~LF~~~ 183 (396)
.|....||..|++.+-.+-... .- .+-++...+.+.+++.+.+....+ =....+. +..++ ++-+-.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~--~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d---~~t~~-----~~~~i~ 98 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAF--NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD---ADKLT-----FEKEIS 98 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCE--EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE---TTTCC-----EEEEEE
T ss_pred cCeEEEEECCCCeEEEEecCCC--CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEE---CcCCc-----EEEEEE
Confidence 4567788888888877765542 22 577787777777765443221000 0111221 11111 111110
Q ss_pred -------ccCCCCeEEeeCCCCcE-EEeecC-CCeEEEEeccCceEEEE-eccCceEEEEEcC------------CeEEE
Q 016020 184 -------SLKWPGFVEFDDVNGKV-LTYSAQ-DSIYKVFDLKNYTMLYS-ISDKHVQEIKISP------------GIMLL 241 (396)
Q Consensus 184 -------~l~~PgfVEFDd~NgkI-lt~~a~-d~~YrVwdlknYs~lys-Is~~~VqEIkiSp------------g~~Ll 241 (396)
.-.+|..+-|++ .||. .+++.. ++.+.|||+.+.+.+-. |.-...+.+.+.| |.++.
T Consensus 99 ~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 99 LPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp ECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred cCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEE
Confidence 125899999998 5654 445543 78999999999999888 6643333333333 22222
Q ss_pred EEecC-CCee----------------------------------eeEEEEeecCcEEE--EEEeec--------ccCC--
Q 016020 242 IFNRS-SSHV----------------------------------PLKILSIEDGTVLK--VFYHLL--------HRNK-- 274 (396)
Q Consensus 242 ~~q~~-~~~i----------------------------------plkIl~IetG~~l~--s~~~~L--------~~sk-- 274 (396)
+.... .... .+.++|+.+++... .+...- .+..
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 22211 0000 13333333332111 111000 0011
Q ss_pred ccchhhhhcceeeEeec-----------CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 275 KVDFIEQFNEKLLVKQE-----------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQe-----------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
.+.|.+ .+..|++-.+ +..+.+||+.+++.+...+.+. |.++.|.+++++.++...++|.+||.+.
T Consensus 258 ~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t 334 (361)
T 2oiz_A 258 LVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQ 334 (361)
T ss_dssp CEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSS
T ss_pred EEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCC
Confidence 145544 6678887543 3479999999999999877776 9999999998855555459999999764
Q ss_pred ---ceeeee
Q 016020 344 ---ELVTSF 349 (396)
Q Consensus 344 ---eL~t~f 349 (396)
+++.++
T Consensus 335 ~~l~~~~~i 343 (361)
T 2oiz_A 335 PEPKLLRTI 343 (361)
T ss_dssp SSCEEEEEE
T ss_pred CcceeeEEe
Confidence 566665
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.5e-05 Score=68.98 Aligned_cols=156 Identities=8% Similarity=0.080 Sum_probs=117.0
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
|--+.+|+ +++......++.+.|||.++.+.+.+|+. .....|.++++-.|.+.... .-.+.++|.++|+.+..+
T Consensus 46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~--~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 46 AQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIW--DYRIFIINPKTYEITGYI 121 (328)
T ss_dssp EEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBS--CSEEEEEETTTTEEEEEE
T ss_pred ceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECC--CCeEEEEECCCCeEEEEE
Confidence 44566765 78877777889999999999999999974 88999999544367777643 346788999999988876
Q ss_pred EeecccC----CccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-------
Q 016020 267 YHLLHRN----KKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN------- 333 (396)
Q Consensus 267 ~~~L~~s----k~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~------- 333 (396)
.. +.. ..+.-+...+.+|++-. .+..|.+||..+++++...+. ...|....|.+++++|++-..
T Consensus 122 ~~--g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 EC--PDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp EC--TTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred Ec--CCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcc
Confidence 62 321 12222223688898886 378999999999998775444 457889999999999888764
Q ss_pred ----CeEEEEeccc-ceeeeec
Q 016020 334 ----RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 334 ----gti~iWd~~g-eL~t~fe 350 (396)
+.|.+||.+. +++..+.
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEE
T ss_pred ccCCceEEEEECCCCeEEEEEe
Confidence 5899999975 6665554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-05 Score=83.66 Aligned_cols=156 Identities=10% Similarity=0.108 Sum_probs=115.9
Q ss_pred CCCeEEee-CCCCcEEEeecCCCeEEEEeccCceEEEEecc--C-ceEEEEEcCCeEEEEEecCCCeeeeE-EEEeecCc
Q 016020 187 WPGFVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--K-HVQEIKISPGIMLLIFNRSSSHVPLK-ILSIEDGT 261 (396)
Q Consensus 187 ~PgfVEFD-d~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~-~VqEIkiSpg~~Ll~~q~~~~~iplk-Il~IetG~ 261 (396)
++..+.|+ + +|+.+++.+ ++.+.+|++.+.+.. .+.. . .+..+.||+|-.|+.... ..-+. +|++.+|+
T Consensus 297 ~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~sdg~~l~~~s~---~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 297 SKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGDTKVAFIHGTR---EGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSSSEEEEEEEET---TEEEEEEEETTTCC
T ss_pred ccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEcCCCeEEEEEC---CCceEEEEECCCCC
Confidence 35678888 6 788888776 889999999887643 3433 3 788999995555544333 34566 77888776
Q ss_pred EEEEEEeecccCC---ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-----
Q 016020 262 VLKVFYHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN----- 333 (396)
Q Consensus 262 ~l~s~~~~L~~sk---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~----- 333 (396)
... +. ++.. .+.|.+ .+.+|++...+..|.+||+.++++..+...+.....++.|+++++.+++.+.
T Consensus 371 ~~~-l~---~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 371 AEK-FE---ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp EEE-CC---CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred ceE-ec---CCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 532 11 3322 377887 8999999999999999999999999988788888899999999997766654
Q ss_pred ------CeEEEEecccceeeeecccc
Q 016020 334 ------RTVAVWNFRGELVTSFEDHL 353 (396)
Q Consensus 334 ------gti~iWd~~geL~t~fedh~ 353 (396)
++|.+||.++..+..+.+|.
T Consensus 446 ~~~~~~~~i~l~d~~~g~~~~l~~~~ 471 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRKIFAATTEN 471 (1045)
T ss_dssp TCSCCEEEEEEEETTTTEEEECSCSS
T ss_pred ccCCCCCeEEEEECCCCcEEEeeCCC
Confidence 38999999974355555553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-05 Score=70.86 Aligned_cols=155 Identities=11% Similarity=0.067 Sum_probs=102.9
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEecc-CceEEEEecc---CceEEEEEcCCeE-EEEEecC-------C-----
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD---KHVQEIKISPGIM-LLIFNRS-------S----- 247 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~lysIs~---~~VqEIkiSpg~~-Ll~~q~~-------~----- 247 (396)
...|.++.|++ +|+.|.....+ .+.+||+. +.+....... .....+.+||+-- |+++... .
T Consensus 39 ~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 45799999998 67766544445 99999998 8876543321 2355688887443 2332211 0
Q ss_pred CeeeeEEEEee-cCcEEEEEEeec----ccCCccchhhhhcceeeEee-cCCeeeEEEcc-cceEEEecc----cccCCC
Q 016020 248 SHVPLKILSIE-DGTVLKVFYHLL----HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NAELMEVSR----TEFMTP 316 (396)
Q Consensus 248 ~~iplkIl~Ie-tG~~l~s~~~~L----~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~-~~ki~~v~~----t~~~~P 316 (396)
..-.+.+|++. +|+....+...- .+-..+.|.+ .|.+|++-. .+..|.+||+. ++++..+.. ++...|
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 23457999998 687665444211 1122377887 788888865 46799999999 888754322 235679
Q ss_pred ceEEEeecCeEEEEEE--cCeEEEEecc
Q 016020 317 SAFIFLYENQLFLTFR--NRTVAVWNFR 342 (396)
Q Consensus 317 sAFiFly~~qLFLTfs--~gti~iWd~~ 342 (396)
+.+.|.++++..++.. +++|.+|+.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 9999999997544444 3899999875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.3e-05 Score=72.90 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=112.4
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeE-EEEEecCCCeeeeEEEEe
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIM-LLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~-Ll~~q~~~~~iplkIl~I 257 (396)
+....+.+|-++-||+ +|++...+..++.+++||+.+.....-+.. .... +.++|.-- |++.....++ -+..++.
T Consensus 125 ~~~a~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~-~I~~~d~ 201 (409)
T 3hrp_A 125 LASAKFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTH-TVYVYMK 201 (409)
T ss_dssp TTTCCCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTC-EEEEEEG
T ss_pred HHHcccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCc-eEEEEEc
Confidence 4445788999999996 889999999899999999998776555544 3344 88886543 3343333222 6677777
Q ss_pred ecCcEEEEEEeecc----cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEe----cccc-cCCCc-eEEEee-cCe
Q 016020 258 EDGTVLKVFYHLLH----RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV----SRTE-FMTPS-AFIFLY-ENQ 326 (396)
Q Consensus 258 etG~~l~s~~~~L~----~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v----~~t~-~~~Ps-AFiFly-~~q 326 (396)
.++.....+....+ +-..+.|-+ .+..|++-..++.|..||..++++..+ .... ...|. ...|.+ ++.
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 77766544421112 122355554 367788877778899999998876554 2222 22356 888998 699
Q ss_pred EEEEEEc-CeEEEEecccceee
Q 016020 327 LFLTFRN-RTVAVWNFRGELVT 347 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~geL~t 347 (396)
||++-+. +.|..||.+|++.+
T Consensus 281 lyv~d~~~~~I~~~~~~g~~~~ 302 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGECEW 302 (409)
T ss_dssp EEEEETTTTEEEEECTTCCEEE
T ss_pred EEEEeCCCCEEEEEecCCCEEE
Confidence 9998776 89999999997433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-05 Score=86.03 Aligned_cols=165 Identities=9% Similarity=0.029 Sum_probs=119.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccC-------------ceEEEEEc-CCeEEEEEecCCCeeeeEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------HVQEIKIS-PGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~-------------~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~ 256 (396)
+.|++ +|+.+++. .++.+.+||+.. ..+..+... .+..+.+| |+--.+++.. ...+.+|+
T Consensus 250 ~~~Sp-DG~~la~~-~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~~~i~~~~ 323 (1045)
T 1k32_A 250 RHLNT-DGRRILFS-KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---RGQAFIQD 323 (1045)
T ss_dssp EEEEE-SSSCEEEE-ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---TTEEEEEC
T ss_pred eeEcC-CCCEEEEE-eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE---cCEEEEEc
Confidence 47776 78878776 589999999954 445577763 58999999 7643333333 24678899
Q ss_pred eecCcEEEEEEeecccCC----ccchhhhhcceeeEeecCCeee-EEEcccceEEEecccccCCCceEEEeecCeEEEEE
Q 016020 257 IEDGTVLKVFYHLLHRNK----KVDFIEQFNEKLLVKQENENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 257 IetG~~l~s~~~~L~~sk----~i~FiE~~~ekLLIKQed~~L~-I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf 331 (396)
+.+|+... + ..+.. .+.|. .++.|+...++..|. +||+.+++...+. .+...+.+..|+++++.+++.
T Consensus 324 ~~~~~~~~-~---~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 324 VSGTYVLK-V---PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp TTSSBEEE-C---SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEE
T ss_pred CCCCceEE-c---cCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEE
Confidence 98887543 1 12222 37888 889999998888888 9999999888776 777788999999999988777
Q ss_pred Ec-CeEEEEeccc-ceeeeeccccccC---CCCCCCcEEEcc
Q 016020 332 RN-RTVAVWNFRG-ELVTSFEDHLLWH---PDCNTNNIYITS 368 (396)
Q Consensus 332 s~-gti~iWd~~g-eL~t~fedh~l~~---~~c~~n~~~it~ 368 (396)
++ ++|.+||+++ ++...++.|.-+. ...||++..++.
T Consensus 397 ~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence 77 7999999976 6666665554332 126677755444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-05 Score=76.00 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=106.9
Q ss_pred CCCeEEeeCCCCcEEEeecCC----------CeEEEEeccC------ceEEEEec-c--CceEEEEEcCCe-EEEEEecC
Q 016020 187 WPGFVEFDDVNGKVLTYSAQD----------SIYKVFDLKN------YTMLYSIS-D--KHVQEIKISPGI-MLLIFNRS 246 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d----------~~YrVwdlkn------Ys~lysIs-~--~~VqEIkiSpg~-~Ll~~q~~ 246 (396)
++..+.|++ +|+.|++.+.+ ..+.+||+.+ .+ +-.+. . ..+..+.+||+- .|++....
T Consensus 131 ~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 131 RWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp EEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred cccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 345678888 88888887776 5899999988 54 33454 3 678889999754 44444433
Q ss_pred C-----CeeeeEEEEee-cCc--EEEEEEeecccCC---ccchhhhhcceeeEeecCC--eeeEEEcccceEEEeccccc
Q 016020 247 S-----SHVPLKILSIE-DGT--VLKVFYHLLHRNK---KVDFIEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 247 ~-----~~iplkIl~Ie-tG~--~l~s~~~~L~~sk---~i~FiE~~~ekLLIKQed~--~L~I~Dv~~~ki~~v~~t~~ 313 (396)
+ ...-+.+|++. +|+ ....+. -++.. .+.|.+ .|+.+++...++ .|..||+.++++..+...+.
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 285 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRREE 285 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccccc
Confidence 3 23569999999 683 222222 12122 367777 777566666666 67777777888887655443
Q ss_pred CC--------CceEEEeecCeEEEEEEcCeEEEE--ecccceeeeeccc
Q 016020 314 MT--------PSAFIFLYENQLFLTFRNRTVAVW--NFRGELVTSFEDH 352 (396)
Q Consensus 314 ~~--------PsAFiFly~~qLFLTfs~gti~iW--d~~geL~t~fedh 352 (396)
.. ...+.|+++++++++.+.+++.+| |..+..++.+..|
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSS
T ss_pred cccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCC
Confidence 32 467889999999888777999999 6665334445444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00069 Score=60.59 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=111.0
Q ss_pred EEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecC-----
Q 016020 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----- 206 (396)
Q Consensus 132 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~----- 206 (396)
+.++-++.....|.+++....+. .-+....+.+ .|+ ...++.... ...+.|.+ +|+.|++.+.
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~--~~~l~~~~~~---~g~---~~~l~~~~~---~~~~~wsp-dg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKK--VSEIWVADLE---TLS---SKKILEAKN---IRSLEWNE-DSRKLLIVGFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTT--EEEEEEEETT---TTE---EEEEEEESE---EEEEEECT-TSSEEEEEEECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCC--cceEEEEECC---CCc---eEEEEcCCC---ccceeECC-CCCEEEEEEccCCCc
Confidence 45566777777777765432111 1122222221 111 123443322 45667876 6777777653
Q ss_pred ----------------------CCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCe----e-eeEEEEeec
Q 016020 207 ----------------------DSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSH----V-PLKILSIED 259 (396)
Q Consensus 207 ----------------------d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~----i-plkIl~Iet 259 (396)
...+.+||+.+.+.+..+....+..+.+||+- +++....... . ...||.+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCC
Confidence 25788999999876444443388999999877 4444432211 2 345666656
Q ss_pred CcEEEEEEeecccCCccchhhhhcceeeEeecC--------CeeeEEEcccceEEEecccccCCCce-EEEeecCeEEEE
Q 016020 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELMEVSRTEFMTPSA-FIFLYENQLFLT 330 (396)
Q Consensus 260 G~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed--------~~L~I~Dv~~~ki~~v~~t~~~~PsA-FiFly~~qLFLT 330 (396)
|+...-... .....+ -..|.+|++-..+ ..|.+|| +++...+...+...... ..|. ++ ++++
T Consensus 208 ~~~~~l~~~----~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKEEKMFEK----VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEEEEEEEE----ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred CceEEeccC----cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE
Confidence 554322221 111223 3478888776633 4688888 88888777666666665 6777 77 7666
Q ss_pred EEc-CeEEEEecc-cce
Q 016020 331 FRN-RTVAVWNFR-GEL 345 (396)
Q Consensus 331 fs~-gti~iWd~~-geL 345 (396)
.+. +.+.+| ++ |++
T Consensus 279 ~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp EEETTEEEEE-EESSSE
T ss_pred EecCCcEEEE-EcCCce
Confidence 555 899999 86 444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00031 Score=64.37 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=122.4
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
+|--+.+++ +|++++ +.++.+..||. +.+.+.++.. .++..+.++++-.+++..... ..-+..++. +|+.+
T Consensus 38 ~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~-~~~v~~vd~-~Gk~l 111 (276)
T 3no2_A 38 ECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH-PSTILEVNM-KGEVL 111 (276)
T ss_dssp CCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST-TEEEEEECT-TSCEE
T ss_pred CCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCC-CCEEEEEeC-CCCEE
Confidence 567778887 899998 45778999999 8898888875 367777777554444444331 123444554 89999
Q ss_pred EEEEeecc------cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 264 KVFYHLLH------RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 264 ~s~~~~L~------~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
..+...-. +...+.+.+ .+++|+....++.+.+||.. ++.+-.-... ..|.+..++++++++++-.+ +.|
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v 188 (276)
T 3no2_A 112 SKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCF 188 (276)
T ss_dssp EEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEE
T ss_pred EEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeE
Confidence 98874211 011134444 78888888899999999988 8877654443 57888888999998887776 589
Q ss_pred EEEecc-cceeeeecccc-----ccCCC----CCCCcEEEccC
Q 016020 337 AVWNFR-GELVTSFEDHL-----LWHPD----CNTNNIYITSD 369 (396)
Q Consensus 337 ~iWd~~-geL~t~fedh~-----l~~~~----c~~n~~~it~~ 369 (396)
..+|.+ |+++-.+..+- ++.+. -+++++||++-
T Consensus 189 ~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 189 VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999999 99877775432 22233 47888888874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00014 Score=62.71 Aligned_cols=181 Identities=12% Similarity=0.124 Sum_probs=114.9
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE-EEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l-ysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
.+..|.-+.||+ +|++...+. ++.+.+||..+.... +...+ .....|.++++-.|++.....+ .+.+++..++.
T Consensus 65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~--~i~~~~~~~~~ 140 (270)
T 1rwi_B 65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNN--RVVKLAAGSKT 140 (270)
T ss_dssp SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGT--EEEEECTTCCS
T ss_pred CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCC--EEEEEECCCce
Confidence 346788899998 688877777 888999998876532 22223 6788999985444555543322 34445433333
Q ss_pred EEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 262 ~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
.......-+..-..+.+-+ .+ .|++-. .+..|.+||..+++......+....|.+..+.+++.||++-.. +.|.+|
T Consensus 141 ~~~~~~~~~~~p~~i~~~~-~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDN-SG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp CEECCCCSCCSCCCEEECT-TC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred eEeeccccCCCceeEEEeC-CC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 2211110011122355554 44 466665 5679999999998887766666688999999999999998764 799999
Q ss_pred ecccceeeeec-cccccCCC----CCCCcEEEccCCc
Q 016020 340 NFRGELVTSFE-DHLLWHPD----CNTNNIYITSDQD 371 (396)
Q Consensus 340 d~~geL~t~fe-dh~l~~~~----c~~n~~~it~~qd 371 (396)
|.+|...+.+. .+. ..|. .+++++|++...+
T Consensus 219 ~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGL-NTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp CTTCSCCEECCCCSC-SCEEEEEECTTCCEEEEEGGG
T ss_pred cCCCCcceeeccCCC-CCceeEEECCCCCEEEEECCC
Confidence 99996443322 221 2222 4567788776544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.95 E-value=6.9e-05 Score=76.68 Aligned_cols=147 Identities=9% Similarity=0.155 Sum_probs=100.5
Q ss_pred EEeeCCCCcEEEeecCC---------CeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec
Q 016020 191 VEFDDVNGKVLTYSAQD---------SIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d---------~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet 259 (396)
+.|.+ +|+.|++...+ +.|.+||+++.+.. .+.. ..++..+|||+--.+++... --|.++++.+
T Consensus 67 ~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~ 141 (740)
T 4a5s_A 67 YSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWN---NDIYVKIEPN 141 (740)
T ss_dssp EEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEET---TEEEEESSTT
T ss_pred eEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEEC---CeEEEEECCC
Confidence 67888 89988888775 67789999998854 4543 67999999985444444443 2477899999
Q ss_pred CcEEEEEEe-----e-------------cccCCccchhhhhcceeeEeecCC----------------------------
Q 016020 260 GTVLKVFYH-----L-------------LHRNKKVDFIEQFNEKLLVKQENE---------------------------- 293 (396)
Q Consensus 260 G~~l~s~~~-----~-------------L~~sk~i~FiE~~~ekLLIKQed~---------------------------- 293 (396)
|+...-... . +....-+.|.+ +|++|+.-+.|+
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 885531110 0 11122356777 888888765322
Q ss_pred --------eeeEEEccc---c---eEEEecc-----cccCCCceEEEeecCeEEEEEEcC-----eEEEEeccc
Q 016020 294 --------NLQILDVRN---A---ELMEVSR-----TEFMTPSAFIFLYENQLFLTFRNR-----TVAVWNFRG 343 (396)
Q Consensus 294 --------~L~I~Dv~~---~---ki~~v~~-----t~~~~PsAFiFly~~qLFLTfs~g-----ti~iWd~~g 343 (396)
.|.+||+.+ + +..++.. .+.......-|++++++.+...++ .|.+||+.+
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 488899999 8 6666643 244445566789999977766552 699999886
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=74.36 Aligned_cols=154 Identities=11% Similarity=0.110 Sum_probs=101.0
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc-------eEEEE
Q 016020 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH-------VQEIK 233 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~-------VqEIk 233 (396)
+.++.+++..|..... .| -+.|.+ +|+.++.+ |+.+++||+++.+..--++... +.++.
T Consensus 3 ~~~tl~~~~~~~~~~~--~~---------~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRLK--LY---------SLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSCCC--CC---------CEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCccccc--cc---------ccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Confidence 4577889988865221 11 355666 67888875 9999999999998766566532 24588
Q ss_pred EcCCeEEEEEecCC-------CeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEE
Q 016020 234 ISPGIMLLIFNRSS-------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (396)
Q Consensus 234 iSpg~~Ll~~q~~~-------~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~ 306 (396)
+||+--.+++.... ..-.+.|||+++|+...-..+ -..-..+.|.+ .|++|..-. +.+|.+||+.+++.+
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~-~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI-PNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC-CCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceE
Confidence 89775544444331 124567999999985431110 01112378888 899998885 579999999999887
Q ss_pred Eecccc------------------cCCCceEEEeecCeEEEEE
Q 016020 307 EVSRTE------------------FMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 307 ~v~~t~------------------~~~PsAFiFly~~qLFLTf 331 (396)
.+.... +....++-|+||++..+..
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 753221 1223568899999864443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0049 Score=53.14 Aligned_cols=260 Identities=10% Similarity=0.078 Sum_probs=152.0
Q ss_pred ceEEEeec-cchhhhhhc-cccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 90 KVIEIVAA-RDIVFALAH-SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 90 ~V~EIv~a-~dii~~L~~-sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
.+..|... +.-+.+-.. .|.-..||.. ++..-+..+.....+++|....... +.+ +... + ..+. ..+.
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~~-~--~~i~--~~~~-- 85 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWF-TENA-A--NKIG--RITK-- 85 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEE-EETT-T--TEEE--EECT--
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEE-eCCC-C--CeEE--EECC--
Confidence 44455444 223333333 4666778777 7766665555567788898886443 333 2211 1 1111 1110
Q ss_pred hhhCCCCCCCccee-ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce-EEEEec--cCceEEEEEcCCeEEEEE
Q 016020 168 IRRGKPDSGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKHVQEIKISPGIMLLIF 243 (396)
Q Consensus 168 i~~gk~~~~~~LF~-~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-~lysIs--~~~VqEIkiSpg~~Ll~~ 243 (396)
.|+. ..+. ......|.-+-+|+ +|++......++.+.+||. +.+ ..+... ...+..|.++++-.+.+.
T Consensus 86 --~g~~----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 86 --KGII----KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp --TSCE----EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred --CCcE----EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 0111 1111 11345788889997 7888887777888899999 444 334443 266889999865445554
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeeccc-CC---ccchhhhhcceeeEee-cCCeeeEEEcccceEEEe-cccccCCCc
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHR-NK---KVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPS 317 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~-sk---~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v-~~t~~~~Ps 317 (396)
.... --+..++. +|+... +. ++. .. .+.+-+ .+ .|++.. .+..|.+||. +++.... .+.....|.
T Consensus 158 ~~~~--~~i~~~~~-~g~~~~-~~--~~~~~~~~~~i~~~~-~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 158 ENQN--NAIGRITE-SGDITE-FK--IPTPASGPVGITKGN-DD-ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH 228 (299)
T ss_dssp ETTT--TEEEEECT-TCCEEE-EE--CSSTTCCEEEEEECT-TS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred eCCC--CEEEEEcC-CCcEEE-ee--CCCCCCcceeEEECC-CC-CEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence 4332 34567777 776543 21 121 11 144433 34 466654 5778999999 8887665 344567899
Q ss_pred eEEEeecCeEEEEEE-cCeEEEEecccceee-eecccc--ccCCCCCCCcEEEccCCcEEEEe
Q 016020 318 AFIFLYENQLFLTFR-NRTVAVWNFRGELVT-SFEDHL--LWHPDCNTNNIYITSDQDLIISY 376 (396)
Q Consensus 318 AFiFly~~qLFLTfs-~gti~iWd~~geL~t-~fedh~--l~~~~c~~n~~~it~~qd~ii~~ 376 (396)
+..+.+++++|++-. ++.|..||.+|++.. .+..+. ++..--+++++|++...+=|+.+
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEETTTEEEEE
T ss_pred eEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEecCCcEEEE
Confidence 999999999999874 489999999886443 233321 11100167788887655555544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00022 Score=64.61 Aligned_cols=159 Identities=9% Similarity=0.083 Sum_probs=103.8
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEEEE--EcC-CeEEEEEec-------------------C
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIK--ISP-GIMLLIFNR-------------------S 246 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqEIk--iSp-g~~Ll~~q~-------------------~ 246 (396)
+.|++ +|+.|++...+..+.+||+.+.+ .++......+.... ++| |..++.... .
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 86 GFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred eEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 35777 89999999999999999999987 46666655444333 354 444433221 2
Q ss_pred CCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecC------CeeeEEEcccceEEEeccccc-CCCceE
Q 016020 247 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTEF-MTPSAF 319 (396)
Q Consensus 247 ~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed------~~L~I~Dv~~~ki~~v~~t~~-~~PsAF 319 (396)
....-|.++++.+|+...-+... ..-..+.|.+..+.+|+.-.++ ..|.++|+.+++...+..... ......
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE 243 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence 23367889999999765544321 1123477877688888877654 377788888887776654332 234566
Q ss_pred EEeecCeE--EEEEEcC----eEEEEeccc-c--eeeeecc
Q 016020 320 IFLYENQL--FLTFRNR----TVAVWNFRG-E--LVTSFED 351 (396)
Q Consensus 320 iFly~~qL--FLTfs~g----ti~iWd~~g-e--L~t~fed 351 (396)
.|+++++. |++..++ .|.+||+.+ + .++.+..
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 284 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA 284 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC
Confidence 79999984 4444433 399999987 4 5556655
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00026 Score=70.23 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=120.8
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCce-------------EEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs-------------~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkI 254 (396)
---+.+...-|.+.+.++ ..++||++++-. .+..+.+ |..+.+ +|..|.+. . ..-+++
T Consensus 40 ~nlLais~~~gll~a~~~--~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v~--~--~~~l~v 110 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASG--SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLVS--T--RNALYS 110 (388)
T ss_dssp CBCEEEETTTTEEEEEET--TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEEE--E--SSEEEE
T ss_pred ccEEEEcCCCCEEEEeCC--CEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEEE--c--CCcEEE
Confidence 344667776666665444 478889987554 4566665 999999 88887777 2 247999
Q ss_pred EEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcC
Q 016020 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~g 334 (396)
||+.+-.........-.+...+.++. ..+++-..|+.|.+||+.+++.... ...++++-.++.+ +.+.+.||
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~---p~~av~~~dG~L~v~dl~~~~~~~~----~~~Vs~v~WSpkG-~~vg~~dg 182 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQL----AQNVTSFDVTNSQ-LAVLLKDR 182 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEE----EESEEEEEECSSE-EEEEETTS
T ss_pred EEchhhhccCccceeecceeeEEecC---CCEEEEECCCCEEEEEccCCccccc----cCCceEEEEcCCc-eEEEEcCC
Confidence 99987664433321101112233332 2388888999999999999887653 3467899999999 89999999
Q ss_pred eEEEEecccce---eeee------ccccccCCCCCCCcEEEccCCcEEEEeccCCCCCc
Q 016020 335 TVAVWNFRGEL---VTSF------EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (396)
Q Consensus 335 ti~iWd~~geL---~t~f------edh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~~ 384 (396)
++.+|+.++.. +..+ ++| +-+...+....|+. +..++++|...+.++.
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~-~~~~~~V~sI~wl~-~~~flv~y~~~~~~~~ 239 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEEL-PVEEYSPLSVTILS-PQDFLAVFGNVISETD 239 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTS-CTTTSEEEEEEESS-SSEEEEEEECCCCSSC
T ss_pred cEEEEcCCCccccccceecCCcccccc-cCCCeeEEEEEEec-CCeEEEEEcCCCCCcC
Confidence 99999999954 6666 443 11333444455554 6777889988775444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00014 Score=65.12 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCcEEEeec---------CCCeEEEEeccCceEEEEeccCceEEEEEcCCe-EEEEEecCC--CeeeeEEEEeecCcEEE
Q 016020 197 NGKVLTYSA---------QDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIFNRSS--SHVPLKILSIEDGTVLK 264 (396)
Q Consensus 197 NgkIlt~~a---------~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~-~Ll~~q~~~--~~iplkIl~IetG~~l~ 264 (396)
+|+.++|.. .++.+.+||+.+.+. ..+ ..+..++|||+- .|++..... ...-|.++++.+|+...
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~ 99 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK 99 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE
Confidence 478888753 267788999998763 344 678899999754 444433332 35568888999888765
Q ss_pred EEEeecccCCccchhhhhcceeeEeec---------------------------CCeeeEEEcccceE-EEecccccCCC
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQE---------------------------NENLQILDVRNAEL-MEVSRTEFMTP 316 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQe---------------------------d~~L~I~Dv~~~ki-~~v~~t~~~~P 316 (396)
.+... .-..+.|.+ .+++|++... ...|.+||+.+++. ..+.. . .+
T Consensus 100 l~~~~--~~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~ 173 (347)
T 2gop_A 100 ILEAK--NIRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RF 173 (347)
T ss_dssp EEEES--EEEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TT
T ss_pred EEcCC--CccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-Cc
Confidence 44421 123467776 7888888763 25799999999988 44433 2 77
Q ss_pred ceEEEeecCeEEEEEEc
Q 016020 317 SAFIFLYENQLFLTFRN 333 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~ 333 (396)
..+.|.+++ +.++.+.
T Consensus 174 ~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 174 SSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp CEEEEETTE-EEEEEEC
T ss_pred ccccCCCCe-EEEEEec
Confidence 889999999 6666543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.3e-05 Score=67.76 Aligned_cols=151 Identities=9% Similarity=0.063 Sum_probs=92.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEeccCceEE-------------------EEEcCCeEEEEEe---cC
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQE-------------------IKISPGIMLLIFN---RS 246 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~~~VqE-------------------IkiSpg~~Ll~~q---~~ 246 (396)
+.|.+ +|+.|++.+.++.+.+||+.+.+ .++.....-..+ +.+||+--.+++. ..
T Consensus 86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 45666 78999999999899999999876 444433321111 1112111000000 01
Q ss_pred CCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecC------CeeeEEEcccceEEEecccc-cCCCceE
Q 016020 247 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELMEVSRTE-FMTPSAF 319 (396)
Q Consensus 247 ~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed------~~L~I~Dv~~~ki~~v~~t~-~~~PsAF 319 (396)
....-+.++++.+|+....+... ..-..+.|.+..+.+|+.-.++ ..|.+||+.+++...+.... ...+...
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDT-AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CCcceEEEEECCCCcEEeeccCC-cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 23456888999999876544311 1122367777667778776654 35888899888777665532 3346667
Q ss_pred EEeecCeEEEEEE-c-----CeEEEEeccc
Q 016020 320 IFLYENQLFLTFR-N-----RTVAVWNFRG 343 (396)
Q Consensus 320 iFly~~qLFLTfs-~-----gti~iWd~~g 343 (396)
.|.++++.++..+ . ++|.+||+.+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 8999988543333 2 3499999976
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00036 Score=64.64 Aligned_cols=186 Identities=13% Similarity=0.108 Sum_probs=110.8
Q ss_pred cccCCCCeEEeeCCCCcEEEeecC-----CCeEEEEeccCceEEEEecc--------CceEEEEEcC-CeEEEEEecC-C
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD--------KHVQEIKISP-GIMLLIFNRS-S 247 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~-----d~~YrVwdlknYs~lysIs~--------~~VqEIkiSp-g~~Ll~~q~~-~ 247 (396)
..+.+|-=|.||+ .|++...+.. +..+.+||+++.+.+..+.- ..+.+|++++ +-.+.+.... .
T Consensus 64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 4578899999998 5888776654 67899999999886655542 2468999994 3354555441 1
Q ss_pred CeeeeEEEEeecCcEEEEEEe----------------ec-------------ccCCccchhhhhcceeeEeecCCeeeEE
Q 016020 248 SHVPLKILSIEDGTVLKVFYH----------------LL-------------HRNKKVDFIEQFNEKLLVKQENENLQIL 298 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s~~~----------------~L-------------~~sk~i~FiE~~~ekLLIKQed~~L~I~ 298 (396)
..--+.+|+..+|+....+.. .+ ....-|.|.+ .+..|++....+. ++|
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~-~l~ 220 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHST-SMY 220 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCS-EEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCC-eEE
Confidence 245678899998876443210 00 0001133333 3444554443322 333
Q ss_pred EcccceEEE-----------e-cccccCCCceEEEeecCeEEEEEEc-CeEEEEec-ccceeeeeccccccCCC----CC
Q 016020 299 DVRNAELME-----------V-SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF-RGELVTSFEDHLLWHPD----CN 360 (396)
Q Consensus 299 Dv~~~ki~~-----------v-~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~-~geL~t~fedh~l~~~~----c~ 360 (396)
.+.+..+.. + ..++.-.|....+..++.||++-+. +.|..||. .|++.+-..+..+..|. -+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~ 300 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS 300 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT
T ss_pred EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC
Confidence 332211000 0 0012236888999999999999987 89999999 88765544433222232 25
Q ss_pred CCcEEEccCCc
Q 016020 361 TNNIYITSDQD 371 (396)
Q Consensus 361 ~n~~~it~~qd 371 (396)
++++|||..|.
T Consensus 301 ~g~l~v~~~~~ 311 (343)
T 2qe8_A 301 DGYLYFDCNQL 311 (343)
T ss_dssp TSCEEEEECCG
T ss_pred CCcEEEEeCcc
Confidence 67788877653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00053 Score=59.10 Aligned_cols=175 Identities=10% Similarity=0.052 Sum_probs=110.3
Q ss_pred CCCeEEeeCCCCcEEE-eecCCCeEEEEeccCceEEE-Eecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 187 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLY-SISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt-~~a~d~~YrVwdlknYs~ly-sIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
.|.-+-+|+ +|++.. .+..++.+.+||..+..... .... ..+..|.++++-.|++... . --+.+|+..++...
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~--~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N--NRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-T--TEEEEECTTCSCCE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-C--CEEEEEeCCCceEe
Confidence 899999998 678777 77888999999987665322 2222 5788899986444555554 2 24566776554432
Q ss_pred EEEEeecccCC---ccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEE
Q 016020 264 KVFYHLLHRNK---KVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAV 338 (396)
Q Consensus 264 ~s~~~~L~~sk---~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~i 338 (396)
.+. ..... .+.|-+ .| +|++- ..+..|.+||..+.+...........|.+..+.+++++|++-.. +.|.+
T Consensus 101 -~~~--~~~~~~p~~i~~~~-~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 101 -VLP--FDGLNYPEGLAVDT-QG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp -ECC--CCSCSSEEEEEECT-TC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred -eee--cCCcCCCcceEECC-CC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 221 11111 244444 34 46665 45678999988777666555566678999999999999998775 89999
Q ss_pred Eeccccee-eeeccccccCCC----CCCCcEEEccCCc
Q 016020 339 WNFRGELV-TSFEDHLLWHPD----CNTNNIYITSDQD 371 (396)
Q Consensus 339 Wd~~geL~-t~fedh~l~~~~----c~~n~~~it~~qd 371 (396)
||.++... .....+. ..|. -+++++|++...+
T Consensus 176 ~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNT 212 (270)
T ss_dssp ECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTT
T ss_pred EecCCCceEeecccCC-CCceEEEECCCCCEEEEECCC
Confidence 99999533 2222221 2222 3566888887433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0027 Score=56.73 Aligned_cols=164 Identities=11% Similarity=0.090 Sum_probs=104.7
Q ss_pred CCCCeEEeeCCCCcEEEeecCC----CeEEEEeccCceEEEEec----cCceEEEEEcCCeEEEEEecCC----CeeeeE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS----DKHVQEIKISPGIMLLIFNRSS----SHVPLK 253 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d----~~YrVwdlknYs~lysIs----~~~VqEIkiSpg~~Ll~~q~~~----~~iplk 253 (396)
..|.-+.||+ +|++++....+ +.+.+||..+......+. ...+.+|.++|+-.+++..... ...-+-
T Consensus 87 ~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 87 ANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 4577888987 68887776666 678899998877543332 3568999999665555544321 123344
Q ss_pred EEEeecCcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEccc-ce-EEEe----c--ccccCCCceEEEeec
Q 016020 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AE-LMEV----S--RTEFMTPSAFIFLYE 324 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~-~k-i~~v----~--~t~~~~PsAFiFly~ 324 (396)
.++..+|+...-.. .+.....+.|.+ .+..|++- ..+..|.+||+.+ ++ +... . -+....|....+.++
T Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 243 (333)
T 2dg1_A 166 YVSPDFRTVTPIIQ-NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD 243 (333)
T ss_dssp EECTTSCCEEEEEE-EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT
T ss_pred EEeCCCCEEEEeec-CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC
Confidence 44444454433222 122223466666 67777765 4578999999964 33 2211 1 111246888888899
Q ss_pred CeEEEEEEc-CeEEEEecccceeeeeccc
Q 016020 325 NQLFLTFRN-RTVAVWNFRGELVTSFEDH 352 (396)
Q Consensus 325 ~qLFLTfs~-gti~iWd~~geL~t~fedh 352 (396)
++++++-.. +.|.+||.+|+.+..+..+
T Consensus 244 G~l~v~~~~~~~v~~~d~~g~~~~~~~~~ 272 (333)
T 2dg1_A 244 DNLYVAMYGQGRVLVFNKRGYPIGQILIP 272 (333)
T ss_dssp CCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred CCEEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence 999998765 8999999999877766533
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0015 Score=58.41 Aligned_cols=158 Identities=8% Similarity=0.035 Sum_probs=101.8
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe--ccCceEEEEEcCCeEEEEEecCC--CeeeeEEEEeecC
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSS--SHVPLKILSIEDG 260 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI--s~~~VqEIkiSpg~~Ll~~q~~~--~~iplkIl~IetG 260 (396)
..+|.-+-||+ +|++...+..++.+.+||.++.+..... ....+..|.++|+-.|++..... ...-+.+|+.++|
T Consensus 44 ~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 44 GLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp CCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 34666778886 8888877788899999999987754333 34789999998654455554332 1135778888887
Q ss_pred cEEEEEEeecccCCc---cchhhhhcceeeEeec-------CCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEE
Q 016020 261 TVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE-------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFL 329 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe-------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFL 329 (396)
+....+.. ...... +.|-+ .+ .|++... ...|..||..++++..+. .....|....|.++++ ||+
T Consensus 123 ~~~~~~~~-~~~~~~~~~i~~d~-~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v 198 (333)
T 2dg1_A 123 NLQDIIED-LSTAYCIDDMVFDS-KG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWV 198 (333)
T ss_dssp SCEEEECS-SSSCCCEEEEEECT-TS-CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEE
T ss_pred EEEEEEcc-CccCCcccceEECC-CC-CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEE
Confidence 75432210 111122 44444 34 5666543 255777777776766553 3345688889999986 777
Q ss_pred EEE-cCeEEEEec--ccceee
Q 016020 330 TFR-NRTVAVWNF--RGELVT 347 (396)
Q Consensus 330 Tfs-~gti~iWd~--~geL~t 347 (396)
+-+ ++.|.+||. +|..++
T Consensus 199 ~~~~~~~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 199 TETTANRLHRIALEDDGVTIQ 219 (333)
T ss_dssp EEGGGTEEEEEEECTTSSSEE
T ss_pred EeCCCCeEEEEEecCCCcCcc
Confidence 765 489999999 454433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.5e-05 Score=72.45 Aligned_cols=179 Identities=11% Similarity=0.158 Sum_probs=93.8
Q ss_pred cEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecc---cCC
Q 016020 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH---RNK 274 (396)
Q Consensus 199 kIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~---~sk 274 (396)
..+.....|+.+..||+++.+.+.+.....+....+. +|.++ +.... .--+..||.+||+.+....+..+ .+.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~-v~~s~--dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAF-LPDPN--DGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCE-EECTT--TCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEE-EEeCC--CCEEEEEECCCCceeeeeeccCccccccC
Confidence 3444456788999999999999988876444333333 34333 33322 34588999999998876542211 111
Q ss_pred ccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEe-ecCeEEEEEEcCeEEEEecc-cceeeeeccc
Q 016020 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-YENQLFLTFRNRTVAVWNFR-GELVTSFEDH 352 (396)
Q Consensus 275 ~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl-y~~qLFLTfs~gti~iWd~~-geL~t~fedh 352 (396)
++ + ..++.|++...++.|.+||..+++++-....+. ...+. .++.+|+...++.+..||.+ |+++-+++-+
T Consensus 87 p~--~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 87 PC--R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp SC--C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred ce--E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 11 1 146788999999999999999999876443332 11222 45666777777999999985 5765554422
Q ss_pred c--ccCCC---CCCCcEEEccCCcEEEEeccCCCCCcccc
Q 016020 353 L--LWHPD---CNTNNIYITSDQDLIISYCKAEPEDQWME 387 (396)
Q Consensus 353 ~--l~~~~---c~~n~~~it~~qd~ii~~~~~~~~~~~~~ 387 (396)
- ..+.. ..++.+|++.....+.++=...+.-.|..
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 160 DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 1 11111 12378998877777777776666666754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0018 Score=58.37 Aligned_cols=163 Identities=10% Similarity=0.127 Sum_probs=106.7
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE--EEecc----CceEEEEEcCCeEEEEEecCCC-------eeee
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISD----KHVQEIKISPGIMLLIFNRSSS-------HVPL 252 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l--ysIs~----~~VqEIkiSpg~~Ll~~q~~~~-------~ipl 252 (396)
..|+.+-||+ +|++++.. ++.+.+||.++.+.. ..... ..+.+++++|+=.+.+...... .-.-
T Consensus 54 ~~~~~i~~~~-dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 54 APVSSVALRQ-SGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp SCEEEEEEBT-TSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred CceEEEEECC-CCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence 3578888987 77777654 567888999887643 33321 3578899996443444332111 1124
Q ss_pred EEEEeec-CcEEEEEEeecccCCccchhhhhcceeeE-eecCCeeeEEEc--ccceEEE-----ecccccCCCceEEEee
Q 016020 253 KILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDV--RNAELME-----VSRTEFMTPSAFIFLY 323 (396)
Q Consensus 253 kIl~Iet-G~~l~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~Dv--~~~ki~~-----v~~t~~~~PsAFiFly 323 (396)
.|+-+.. |+... +...+...+-+.|.+ .+..|++ ...+..|.+||+ .++++.. ........|....+-.
T Consensus 131 ~l~~~d~~g~~~~-~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 131 ALYSLFPDHHVKK-YFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp EEEEECTTSCEEE-EEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred EEEEEECCCCEEE-EeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 6777764 44333 222234445588887 7777765 456788999998 5665431 2223345788988989
Q ss_pred cCeEEEEEEc-CeEEEEecc-cceeeeecccc
Q 016020 324 ENQLFLTFRN-RTVAVWNFR-GELVTSFEDHL 353 (396)
Q Consensus 324 ~~qLFLTfs~-gti~iWd~~-geL~t~fedh~ 353 (396)
+++|+++-.. +.|..||.+ |+++..++-+.
T Consensus 209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp TSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 9999999876 789999998 89888776553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0076 Score=55.41 Aligned_cols=248 Identities=10% Similarity=0.121 Sum_probs=142.9
Q ss_pred EeeccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC
Q 016020 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (396)
Q Consensus 94 Iv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~ 173 (396)
++...+.|++-+..|.-.|||..||+.+=...... ++..+.... ++.+++.+ .+ ..|.|-.. .
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~~--~~~v~v~~---~~--g~l~~~d~-----~---- 161 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPVVS--DGLVLIHT---SN--GQLQALNE-----A---- 161 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCEEE--TTEEEEEC---TT--SEEEEEET-----T----
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCEEE--CCEEEEEc---CC--CeEEEEEC-----C----
Confidence 34557888888888989999999999876554432 222222222 23444422 11 12333221 1
Q ss_pred CCCCcceeecc---------cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc---------e----EE
Q 016020 174 DSGFALFESES---------LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH---------V----QE 231 (396)
Q Consensus 174 ~~~~~LF~~~~---------l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~---------V----qE 231 (396)
.|..+..... ...| -.+ +|.+++ ...++.+..+|.++.+.+.+..... + ..
T Consensus 162 -tG~~~W~~~~~~~~~~~~~~~~~---~~~--~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3q7m_A 162 -DGAVKWTVNLDMPSLSLRGESAP---TTA--FGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTT 234 (376)
T ss_dssp -TCCEEEEEECCC-----CCCCCC---EEE--TTEEEE-CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCC
T ss_pred -CCcEEEEEeCCCCceeecCCCCc---EEE--CCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCC
Confidence 1222222111 0122 222 355554 3457788889999998888776321 0 12
Q ss_pred EEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-
Q 016020 232 IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR- 310 (396)
Q Consensus 232 IkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~- 310 (396)
..+.+|.+++.. . .--+..+|.++|+.+-.... .. ... ....++.|++...++.|..+|..+++.+-...
T Consensus 235 p~~~~~~v~~~~-~---~g~l~~~d~~tG~~~w~~~~--~~--~~~-~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 235 PVVVNGVVFALA-Y---NGNLTALDLRSGQIMWKREL--GS--VND-FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp CEEETTEEEEEC-T---TSCEEEEETTTCCEEEEECC--CC--EEE-EEEETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred cEEECCEEEEEe-c---CcEEEEEECCCCcEEeeccC--CC--CCC-ceEECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 223455554332 1 23578889999998876541 11 111 23368899999999999999999998875433
Q ss_pred cccCCCceEEEeecCeEEEEEEcCeEEEEecc-cceeeeecc---ccccCCCCCCCcEEEccCCcEEEE
Q 016020 311 TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED---HLLWHPDCNTNNIYITSDQDLIIS 375 (396)
Q Consensus 311 t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fed---h~l~~~~c~~n~~~it~~qd~ii~ 375 (396)
.......+ ..+.++.||+.-.+|.+.++|.. |+++..++- .....|--.++.+|+.....-|..
T Consensus 306 ~~~~~~~~-~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 306 LLHRLLTS-PVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYS 373 (376)
T ss_dssp TTTSCCCC-CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEE
T ss_pred cCCCcccC-CEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEE
Confidence 11112222 23468899998888999999964 576665442 223334455778887766544443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.026 Score=57.28 Aligned_cols=202 Identities=9% Similarity=0.050 Sum_probs=119.7
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCC--CeEEeeCCCCcEEEeecCCC
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDS 208 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~P--gfVEFDd~NgkIlt~~a~d~ 208 (396)
.+.++-...+...|.+++.....+-..+ +.. ++.-|+. + ....+.+- +-+.|.+ .|+.++|.+.|.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i--~v~---dl~tg~~-----~-~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~ 189 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVL--HVI---DVDSGEW-----S-KVDVIEGGKYATPKWTP-DSKGFYYEWLPT 189 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEE--EEE---ETTTCCB-----C-SSCCBSCCTTCCCEECT-TSSEEEEEECCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEE--EEE---ECCCCCC-----c-CCcccCcccccceEEec-CCCEEEEEEecC
Confidence 5667777776666666554433221223 222 2333332 1 01122222 4577877 789999988877
Q ss_pred e-------------EEEEeccCce----EEEEecc--CceEEEEEcCC-eEEEEEecCC-CeeeeEEEEeecCcEEEEEE
Q 016020 209 I-------------YKVFDLKNYT----MLYSISD--KHVQEIKISPG-IMLLIFNRSS-SHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 209 ~-------------YrVwdlknYs----~lysIs~--~~VqEIkiSpg-~~Ll~~q~~~-~~iplkIl~IetG~~l~s~~ 267 (396)
. +++|++.+.. ++|...+ ..+..+.+||+ -.|++....+ ...-+.+++..+|+.. .+.
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~ 268 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV 268 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence 6 9999998765 7888766 46889999975 4444444333 3556666776666533 222
Q ss_pred eecccCCccchhhhhcceeeEeec----CCeeeEEEcccceE---EEecccc-cCCCceEEEeecCeEEEEEEc-CeEEE
Q 016020 268 HLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAEL---MEVSRTE-FMTPSAFIFLYENQLFLTFRN-RTVAV 338 (396)
Q Consensus 268 ~~L~~sk~i~FiE~~~ekLLIKQe----d~~L~I~Dv~~~ki---~~v~~t~-~~~PsAFiFly~~qLFLTfs~-gti~i 338 (396)
- +...........+. |++..+ +..|.+||+.+++. ..+.... ......+-|. +++|+++.+. ++.++
T Consensus 269 ~--~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 269 K--GVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp E--CSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred c--CCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 1 22222222224677 888764 67899999988762 4443332 4445666666 7888877765 78888
Q ss_pred Eecc--cceeeee
Q 016020 339 WNFR--GELVTSF 349 (396)
Q Consensus 339 Wd~~--geL~t~f 349 (396)
|.++ |+....+
T Consensus 345 ~~~~~~g~~~~~l 357 (695)
T 2bkl_A 345 RVATLKGKPVRTV 357 (695)
T ss_dssp EEEETTCCEEEEC
T ss_pred EEEeCCCCeeEEe
Confidence 8654 6544433
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00066 Score=68.96 Aligned_cols=150 Identities=10% Similarity=0.073 Sum_probs=95.6
Q ss_pred eEEeeCCCCcEEEeecCCC-----eEEEEeccCceEEE-EeccCceEEEEEcCCe-EEEEEecCCC-------------e
Q 016020 190 FVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTMLY-SISDKHVQEIKISPGI-MLLIFNRSSS-------------H 249 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~-----~YrVwdlknYs~ly-sIs~~~VqEIkiSpg~-~Ll~~q~~~~-------------~ 249 (396)
.+.|.+ +|+.|+|...++ .++|||+.+.+.+- .+.+..+..+.|||+- .|+....... .
T Consensus 129 ~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 129 GYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp EEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred EEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 567886 899999887754 89999999998654 3444457789999654 4443333222 1
Q ss_pred eeeEEEEeecCcEEEEEEeecc-cC---CccchhhhhcceeeEeec-----CCeeeEEEccc------c--eEEEecccc
Q 016020 250 VPLKILSIEDGTVLKVFYHLLH-RN---KKVDFIEQFNEKLLVKQE-----NENLQILDVRN------A--ELMEVSRTE 312 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~-~s---k~i~FiE~~~ekLLIKQe-----d~~L~I~Dv~~------~--ki~~v~~t~ 312 (396)
.-+.+|++.+|+....+.+-.+ +. ..+.|.+ .|.+|++... +..|.+||+.+ + +...+....
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~ 286 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF 286 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence 2278889988873322221111 11 1367777 8999998875 67899999987 5 455543322
Q ss_pred cCCCceEEEeecCeEEEEEEc-----CeEEEEeccc
Q 016020 313 FMTPSAFIFLYENQLFLTFRN-----RTVAVWNFRG 343 (396)
Q Consensus 313 ~~~PsAFiFly~~qLFLTfs~-----gti~iWd~~g 343 (396)
... ...|.++++.++..++ +.|-+||+++
T Consensus 287 -~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 287 -EGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp -SSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred -CcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 222 3346676665554444 2588999876
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0089 Score=52.92 Aligned_cols=178 Identities=11% Similarity=0.056 Sum_probs=115.5
Q ss_pred cccCCCCeEEeeCCCCc-EEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 183 ESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 183 ~~l~~PgfVEFDd~Ngk-Ilt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
....+|.-+-||+ +|+ ++..+..++.+..||..+....+......+..|.++|+=.|++.... .--+.+|+..+|+
T Consensus 25 ~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~--~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 25 DGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHG--LRRLERQREPGGE 101 (296)
T ss_dssp CCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETT--TTEEEEECSTTCC
T ss_pred cCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecC--CCeEEEEcCCCCc
Confidence 3467889999998 555 88888889999999999885555556678999999865445555443 2357889998998
Q ss_pred EEEEEEee----cccCCccchhhhhcceeeE-----ee-------------cCCeeeEEEcccceEEEecccccCCCceE
Q 016020 262 VLKVFYHL----LHRNKKVDFIEQFNEKLLV-----KQ-------------ENENLQILDVRNAELMEVSRTEFMTPSAF 319 (396)
Q Consensus 262 ~l~s~~~~----L~~sk~i~FiE~~~ekLLI-----KQ-------------ed~~L~I~Dv~~~ki~~v~~t~~~~PsAF 319 (396)
...-+... ..+-..+.|-+ .| .|++ .. .+..|-.+|.. +++..+ ......|...
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~-~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~gi 177 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAP-DG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP-IRDRVKPNGL 177 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECT-TS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE-ECCCSSEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECC-CC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe-ecCCCCCccE
Confidence 65432211 11122355555 44 4555 22 13345555554 555544 4567788999
Q ss_pred EEeecCeEEEEEEc-CeEEEEecc--cce---eeeeccccccCCC----CCCCcEEEcc
Q 016020 320 IFLYENQLFLTFRN-RTVAVWNFR--GEL---VTSFEDHLLWHPD----CNTNNIYITS 368 (396)
Q Consensus 320 iFly~~qLFLTfs~-gti~iWd~~--geL---~t~fedh~l~~~~----c~~n~~~it~ 368 (396)
.|.++++++++-+. +.|.+||.+ |.+ ...+ ......|+ -+++++|++.
T Consensus 178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE
T ss_pred EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc
Confidence 99999988754443 799999995 455 3344 22233343 3567788877
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0017 Score=66.70 Aligned_cols=145 Identities=10% Similarity=0.112 Sum_probs=108.3
Q ss_pred eeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEEEee--cCcEEEEEEe
Q 016020 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIE--DGTVLKVFYH 268 (396)
Q Consensus 193 FDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Ie--tG~~l~s~~~ 268 (396)
.|+ .+..+.....++.+.|||..+++.+-+|.- ..++.+.+||+ -.|++... ...+.++|+. +++.+.++..
T Consensus 163 ~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CCG-GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEEC
T ss_pred cCC-CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEec
Confidence 554 567788888899999999999999999875 78899999965 55555543 3479999995 8888876652
Q ss_pred ecccC-Cccchhh---hhcceeeEeecC-CeeeEEEcccceEEEecccccC-----------CCceEEEeecCe-EEEEE
Q 016020 269 LLHRN-KKVDFIE---QFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFM-----------TPSAFIFLYENQ-LFLTF 331 (396)
Q Consensus 269 ~L~~s-k~i~FiE---~~~ekLLIKQed-~~L~I~Dv~~~ki~~v~~t~~~-----------~PsAFiFly~~q-LFLTf 331 (396)
+.. ..+.|.. ..|.++++..+. +.+.|+|..+.+.+++-.+..+ .+++..+++++. .+++.
T Consensus 239 --G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 --GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp --CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred --CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 221 2277774 489999998865 8999999999999886544332 345677777644 45666
Q ss_pred Ec-CeEEEEeccc
Q 016020 332 RN-RTVAVWNFRG 343 (396)
Q Consensus 332 s~-gti~iWd~~g 343 (396)
.+ |+|.++|...
T Consensus 317 ~~~g~v~~vd~~~ 329 (567)
T 1qks_A 317 KETGKILLVDYTD 329 (567)
T ss_dssp TTTTEEEEEETTC
T ss_pred cCCCeEEEEecCC
Confidence 55 8999999876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0081 Score=52.66 Aligned_cols=180 Identities=11% Similarity=0.070 Sum_probs=110.1
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE-ec------cCceEEEEEcCCeEEEEEecCCC----------
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-IS------DKHVQEIKISPGIMLLIFNRSSS---------- 248 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys-Is------~~~VqEIkiSpg~~Ll~~q~~~~---------- 248 (396)
..|--+.+|+-+|++...+..+ .+.+||.. .+.... .. ...+..|.++++-.+++......
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 4566788888548866665544 56679988 554322 11 13588999986555555544321
Q ss_pred ---eeeeEEEEeecCcEEEEEEeecccCCccchh----hhhcceeeEee-cCCeeeEEEcc-cceE-----EEeccccc-
Q 016020 249 ---HVPLKILSIEDGTVLKVFYHLLHRNKKVDFI----EQFNEKLLVKQ-ENENLQILDVR-NAEL-----MEVSRTEF- 313 (396)
Q Consensus 249 ---~iplkIl~IetG~~l~s~~~~L~~sk~i~Fi----E~~~ekLLIKQ-ed~~L~I~Dv~-~~ki-----~~v~~t~~- 313 (396)
..-+..++.. |+....... +.....+.|. + .++.|++-. .+..|.+||+. ++++ .....++.
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~~~-~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVDTA-FQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEEEE-ESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred cCCCCeEEEECCC-CCEEEeccC-CCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 1334444443 554432221 1222335555 4 566777764 67899999987 5553 22222333
Q ss_pred CCCceEEEeecCeEEEEEE-cCeEEEEecc-cceeeeeccccccCCC---CCCCc-EEEccCC
Q 016020 314 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD---CNTNN-IYITSDQ 370 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs-~gti~iWd~~-geL~t~fedh~l~~~~---c~~n~-~~it~~q 370 (396)
..|....+.++++++++-. ++.|..||.+ |+++..+..+..+... .++++ +|++...
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 5688988999999999876 4899999999 8876666544222111 35666 8887765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.014 Score=50.22 Aligned_cols=173 Identities=12% Similarity=0.124 Sum_probs=111.8
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec--cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs--~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
...|--+.+|+ +|.+......++.+.+||...-...+.+. ...+..|.+.++=.|++..... --+..++. +|+.
T Consensus 56 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 56 DAKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG--NRIGRITD-DGKI 131 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTT--TEEEEECT-TCCE
T ss_pred cCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCC--ceEEEECC-CCCE
Confidence 35677888997 78888877778888899987443445553 3678999998644455544332 24566777 6665
Q ss_pred EEEEEeecc-cCCc---cchhhhhcceeeEe-ecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEE-cCe
Q 016020 263 LKVFYHLLH-RNKK---VDFIEQFNEKLLVK-QENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRT 335 (396)
Q Consensus 263 l~s~~~~L~-~sk~---i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs-~gt 335 (396)
.. +. ++ .... +.+-+ .+ .|++. +.++.|..||. ++++..+ ..+....|.+..+.++++||++-. ++.
T Consensus 132 ~~-~~--~~~~~~~~~~i~~~~-~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 132 RE-YE--LPNKGSYPSFITLGS-DN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp EE-EE--CSSTTCCEEEEEECT-TS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred EE-ec--CCCCCCCCceEEEcC-CC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence 42 22 12 1122 33332 33 56664 45788999999 8888765 445567788988988999999876 489
Q ss_pred EEEEecccceee-eeccccccCCC----CCCCcEEEcc
Q 016020 336 VAVWNFRGELVT-SFEDHLLWHPD----CNTNNIYITS 368 (396)
Q Consensus 336 i~iWd~~geL~t-~fedh~l~~~~----c~~n~~~it~ 368 (396)
|..||..|++.. .+..+. ..+. -+++++|++.
T Consensus 206 i~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 206 IGRITTSGEITEFKIPTPN-ARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp EEEECTTCCEEEEECSSTT-CCEEEEEECSTTCEEEEE
T ss_pred EEEECCCCcEEEEECCCCC-CCceeEEECCCCCEEEec
Confidence 999999776443 122111 1111 3567788886
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.061 Score=53.06 Aligned_cols=215 Identities=8% Similarity=-0.006 Sum_probs=114.2
Q ss_pred CceEEEEeeecCCCeEEEEEeEecCC---CceeeeEeeehhhhhhCCC---CCCCcce-eecccCCCCeEEeeCCCCcEE
Q 016020 129 DEVIRSLFYNKNNDSLITVSVYASDN---FSSLKCRSTKIEYIRRGKP---DSGFALF-ESESLKWPGFVEFDDVNGKVL 201 (396)
Q Consensus 129 ~evIrsifyN~~n~slI~vSv~~sd~---~s~L~cr~~~~~~i~~gk~---~~~~~LF-~~~~l~~PgfVEFDd~NgkIl 201 (396)
...+.++-++.+...|+++|.-..++ -..-+.+..+. ..+.. .....|. ... .+...+.|++ +|+.|
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~~~~~--~~~~~~~~Sp-DG~~l 202 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL---DGSAAADRSAVRELSDDAH--RFVTGPRLSP-DGRQA 202 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET---TSTTTTCGGGSEESSCSCS--SEECCCEECT-TSSEE
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC---CCCccccCCceeEEEecCC--CcccCceECC-CCCEE
Confidence 34567788888888888876432110 01122223322 11000 0112233 111 1223456887 89988
Q ss_pred EeecCC--------CeEEEEecc-Cc--eEEEEec---cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE
Q 016020 202 TYSAQD--------SIYKVFDLK-NY--TMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (396)
Q Consensus 202 t~~a~d--------~~YrVwdlk-nY--s~lysIs---~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~ 267 (396)
++.+.+ ..+.+||+. +. .....+. ...+..+.+||+--+++.........|.++++.+|+....+.
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 877754 489999999 56 2344443 368999999964435555555555667777777776543221
Q ss_pred eeccc--------CCccchhhhhcceeeEeecCCeeeEE--EcccceEEEecccccCCCceEEEeecCeEEEEEEc--Ce
Q 016020 268 HLLHR--------NKKVDFIEQFNEKLLVKQENENLQIL--DVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RT 335 (396)
Q Consensus 268 ~~L~~--------sk~i~FiE~~~ekLLIKQed~~L~I~--Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gt 335 (396)
..-.. ...+.|.+ .+..++...+ ...+|| |+.++++..+. .+......+.-...+.++++.++ ..
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~ 359 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAA-GPWTEWAATLTVSGTRAVGVAASPRTA 359 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECC-SSCCEEEEEEEEETTEEEEEEEETTEE
T ss_pred ccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEec-CCCCeEEEEEecCCCEEEEEEcCCCCC
Confidence 10000 11234444 5666677777 888999 77778865543 33333343311234455555554 34
Q ss_pred EEEE--eccc-ceeeeeccc
Q 016020 336 VAVW--NFRG-ELVTSFEDH 352 (396)
Q Consensus 336 i~iW--d~~g-eL~t~fedh 352 (396)
.++| |..+ ++....+.|
T Consensus 360 ~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 360 YEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp EEEEEEETTTCCEEEEESCC
T ss_pred CEEEEEECCCCceEEeecCC
Confidence 4555 5545 443333333
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0063 Score=54.92 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=114.7
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc------CceEEEEEcCCeEEEEEecCC-------------
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KHVQEIKISPGIMLLIFNRSS------------- 247 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~------~~VqEIkiSpg~~Ll~~q~~~------------- 247 (396)
.|.-+.+|+ +|++++.+..++.+.+||.. .+...-... ..+.++.++|+=.+.+..+.-
T Consensus 87 ~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 87 FTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred ccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 356678887 78988887777888888875 443221111 235678888665566653211
Q ss_pred --CeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecC------CeeeEEEcccceEEE---ecccccCCC
Q 016020 248 --SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNAELME---VSRTEFMTP 316 (396)
Q Consensus 248 --~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed------~~L~I~Dv~~~ki~~---v~~t~~~~P 316 (396)
...-+-.++..+|+...-. .+....-+.|.+ .+..|++...+ ..|.+||+..+.+.. ........|
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p 241 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP 241 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred ccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence 1234556666677755433 233334578877 78888887665 689999998654321 112234568
Q ss_pred ceEEEeecCeEEEEEEcCeEEEEecccceeeeeccccccCCC---C-CCCcEEEccCCcE
Q 016020 317 SAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD---C-NTNNIYITSDQDL 372 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~gti~iWd~~geL~t~fedh~l~~~~---c-~~n~~~it~~qd~ 372 (396)
..+.+-.+++|+++- .+.|.+||.+|+++..+.-+. ...+ . ..+.+|||+...|
T Consensus 242 dgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 889999999999887 456999999998777665443 1111 1 2346888877544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0031 Score=59.33 Aligned_cols=135 Identities=12% Similarity=0.095 Sum_probs=94.8
Q ss_pred CCCeEEEEeccCceEEEEeccCceEEEEEcCC-eEEEEEec-------CCCeeeeEEEEeecCcEEEEEEeecc------
Q 016020 206 QDSIYKVFDLKNYTMLYSISDKHVQEIKISPG-IMLLIFNR-------SSSHVPLKILSIEDGTVLKVFYHLLH------ 271 (396)
Q Consensus 206 ~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg-~~Ll~~q~-------~~~~iplkIl~IetG~~l~s~~~~L~------ 271 (396)
.|+.+.|||.++.+.+-.|.....-.|.+||+ -.|.+... ....-.+.+||+.+++.+..+...-.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 37799999999999998988744449999965 45555542 11245688999999999998773211
Q ss_pred cCCccchhhhhcceeeEeec--CCeeeEEEcccceEEEe-cccccCCCceEEEeecC-eEEEEEEc-CeEEEEeccc
Q 016020 272 RNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEV-SRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 272 ~sk~i~FiE~~~ekLLIKQe--d~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~g 343 (396)
.-..+.|.+ .|.+|++... +..+.+||+.+++.+.. .+....++ ..+.+++ ..|++++. |++.+|++..
T Consensus 109 ~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~--v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 109 YDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS--VIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE--EEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce--eEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 112366666 8999999875 57899999999998875 44433222 3344543 66777776 8888888753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00078 Score=60.63 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=92.0
Q ss_pred CCeEEeeCCCCcEEEeecCC---CeEEEEeccCceEEEEeccC--ceE-EEEEcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISDK--HVQ-EIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d---~~YrVwdlknYs~lysIs~~--~Vq-EIkiSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
+.-+.|.+ +|+.|++...+ ..+.+||+.+.+.. .+... .+. .+.|||+--.|++..... -+.+|++.+|+
T Consensus 38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~--~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDERAFFYVKNEL--NLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECTTSSEEEEEETTT--EEEEEETTTCC
T ss_pred eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECCCCCEEEEEEcCC--cEEEEECCCCC
Confidence 33445776 78888776543 47888999988743 44432 222 278897654444443333 58899999988
Q ss_pred EEEEEEeecc---cCCc----------------cchhhhhcceeeEe-----ecCCeeeEEEcccceEEEecccccCCCc
Q 016020 262 VLKVFYHLLH---RNKK----------------VDFIEQFNEKLLVK-----QENENLQILDVRNAELMEVSRTEFMTPS 317 (396)
Q Consensus 262 ~l~s~~~~L~---~sk~----------------i~FiE~~~ekLLIK-----Qed~~L~I~Dv~~~ki~~v~~t~~~~Ps 317 (396)
....+...-. .++. +.|.+ .++++++. ..+..|.+||+.+++...+. .+...+.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~ 191 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLG 191 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccc
Confidence 6554431100 0011 22332 34444433 35668999999999988765 3455677
Q ss_pred eEEEee-cCeEEEEEEc-------CeEEEEecccc
Q 016020 318 AFIFLY-ENQLFLTFRN-------RTVAVWNFRGE 344 (396)
Q Consensus 318 AFiFly-~~qLFLTfs~-------gti~iWd~~ge 344 (396)
...|.+ +++.++..++ ..|-+||++|.
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence 888999 6775444444 25788888774
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0015 Score=59.08 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=92.5
Q ss_pred EeeCCCCcEEEeecC-CC--eEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 192 EFDDVNGKVLTYSAQ-DS--IYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 192 EFDd~NgkIlt~~a~-d~--~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.|.+ +|+.|++.+. ++ .+.+||+.+.+..-.... ..+....+||+--.|++.... -.+.+|++++|+....+
T Consensus 42 ~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~--~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 42 CFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG--RNLMRVDLATLEENVVY 118 (388)
T ss_dssp CBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT--TEEEEEETTTCCEEEEE
T ss_pred cCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC--CeEEEEECCCCcceeee
Confidence 4566 7887887776 66 377789988875433332 233367899766444554432 36889999999887654
Q ss_pred EeecccCCc---cchh-hhhcceeeE----------------------eecCCeeeEEEcccceEEEecccccCCCceEE
Q 016020 267 YHLLHRNKK---VDFI-EQFNEKLLV----------------------KQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (396)
Q Consensus 267 ~~~L~~sk~---i~Fi-E~~~ekLLI----------------------KQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFi 320 (396)
.. + ... ..|. -..+.+|+. ...+..|.+||+.+++...+... ........
T Consensus 119 ~~--~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~ 194 (388)
T 3pe7_A 119 QV--P-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQWLGHPI 194 (388)
T ss_dssp EC--C-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SSCEEEEE
T ss_pred ec--h-hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-CccccccE
Confidence 41 1 111 1121 223444432 23457899999999998876543 34567888
Q ss_pred Eee-cCeEEEEEEcC-------eEEEEecccc
Q 016020 321 FLY-ENQLFLTFRNR-------TVAVWNFRGE 344 (396)
Q Consensus 321 Fly-~~qLFLTfs~g-------ti~iWd~~ge 344 (396)
|++ +++.++..+++ .+-+||.+|.
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 195 YRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp EETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 999 88876666643 6677777774
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.033 Score=47.94 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=112.0
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec--cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs--~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
+..|.-+.+|+ +|.+...+..++.+.+||...-...+.++ ...+..|.+.++-.|.+.....+ -+..++.. |+.
T Consensus 61 ~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~--~i~~~~~~-g~~ 136 (300)
T 2qc5_A 61 DAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGD--RIGKLTAD-GTI 136 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT--EEEEECTT-SCE
T ss_pred CCcceeEEECC-CCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCC--eEEEECCC-CCE
Confidence 45788888986 78888877777888999988444445554 36789999985444555544322 35566665 655
Q ss_pred EEEEEeecc-cCCc---cchhhhhcceeeEee-cCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-Ce
Q 016020 263 LKVFYHLLH-RNKK---VDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN-RT 335 (396)
Q Consensus 263 l~s~~~~L~-~sk~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~-gt 335 (396)
. .+. ++ .... +.+-+ .+. |++.. .+..|..||. +++.... .+.....|.+..+-++++||++-.. +.
T Consensus 137 ~-~~~--~~~~~~~~~~i~~d~-~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 137 Y-EYD--LPNKGSYPAFITLGS-DNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp E-EEE--CSSTTCCEEEEEECT-TSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred E-Ecc--CCCCCCCceeEEECC-CCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE
Confidence 4 222 22 1112 33333 344 66665 4678999999 7776664 3355667889888889999998875 68
Q ss_pred EEEEecccceee-eeccccccCCC----CCCCcEEEccCC
Q 016020 336 VAVWNFRGELVT-SFEDHLLWHPD----CNTNNIYITSDQ 370 (396)
Q Consensus 336 i~iWd~~geL~t-~fedh~l~~~~----c~~n~~~it~~q 370 (396)
|..||..|++.. .+..+. ..|. -+++++|++...
T Consensus 211 i~~~~~~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~ 249 (300)
T 2qc5_A 211 IGRITTTGEISEYDIPTPN-ARPHAITAGKNSEIWFTEWG 249 (300)
T ss_dssp EEEECTTCCEEEEECSSTT-CCEEEEEECSTTCEEEEETT
T ss_pred EEEEcCCCcEEEEECCCCC-CCceEEEECCCCCEEEeccC
Confidence 999999886544 222221 1111 345778888744
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.029 Score=51.56 Aligned_cols=161 Identities=12% Similarity=0.036 Sum_probs=100.3
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec------cCceEEEEEcCCeEEEEEecCC--CeeeeEEEEee
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKHVQEIKISPGIMLLIFNRSS--SHVPLKILSIE 258 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs------~~~VqEIkiSpg~~Ll~~q~~~--~~iplkIl~Ie 258 (396)
.|..+-+++ +|++++.. +.-+.+||.++.+...-.. ...+.+++++|+-.+++..... ..-.-.||.+.
T Consensus 91 ~v~~i~~~~-dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 91 MGSALAKIS-DSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp CEEEEEEEE-TTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred cceEEEEeC-CCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 466777887 57777654 3347788998877432222 1358899999654444433211 01123455555
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEcc--cc-eE-----EEecccccCCCceEEEeecCeEEE
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NA-EL-----MEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~--~~-ki-----~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
+|+...-.. -+.....+.|.+ .++.|++- ..+..|.+||+. ++ ++ .....+....|..+.+-.++.|++
T Consensus 168 ~g~~~~~~~-~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv 245 (326)
T 2ghs_A 168 KGKVTKLFA-DISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 245 (326)
T ss_dssp TTEEEEEEE-EESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred CCcEEEeeC-CCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence 665433222 122333467766 67777665 456889999986 66 42 222223345688888888999999
Q ss_pred EEEc-CeEEEEecccceeeeeccc
Q 016020 330 TFRN-RTVAVWNFRGELVTSFEDH 352 (396)
Q Consensus 330 Tfs~-gti~iWd~~geL~t~fedh 352 (396)
+-.. +.|..||.+|+++..+.-+
T Consensus 246 a~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 246 ARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp EEETTTEEEEECTTCCEEEEEECS
T ss_pred EEeCCCEEEEECCCCCEEEEEECC
Confidence 8765 8999999999877766543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.095 Score=48.07 Aligned_cols=261 Identities=14% Similarity=0.169 Sum_probs=155.1
Q ss_pred eccchhhhhhccccceeeeccccceEEEecCCC---------CceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSP---------DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 96 ~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~---------~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
.+++.|++....|.-.|||..||+.+=..+... ..+..++-.. ++.+++.+ .+ ..|.|--.
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~---~~--g~l~a~d~--- 120 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGS---EK--AQVYALNT--- 120 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEE---TT--SEEEEEET---
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEc---CC--CEEEEEEC---
Confidence 357888888888899999999999886666543 1233333333 24444422 11 23333221
Q ss_pred hhhhCCCCCCCcceee----cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc-e------EEEEEc
Q 016020 167 YIRRGKPDSGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH-V------QEIKIS 235 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~----~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~-V------qEIkiS 235 (396)
. .|..+.+. .....|- .+ +|++++ ...++.+..+|.++.+.+.+..... + ....+.
T Consensus 121 --~-----tG~~~W~~~~~~~~~~~p~---~~--~~~v~v-~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 121 --S-----DGTVAWQTKVAGEALSRPV---VS--DGLVLI-HTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp --T-----TCCEEEEEECSSCCCSCCE---EE--TTEEEE-ECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred --C-----CCCEEEEEeCCCceEcCCE---EE--CCEEEE-EcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence 1 22223221 1222332 22 355554 3457888899999999888776521 1 334445
Q ss_pred CCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC-------ccchh-hhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 236 PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK-------KVDFI-EQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 236 pg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk-------~i~Fi-E~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
+|.+++- . ..-.+..+|.+||+.+-......+... .+.-. ...++.+++...++.|.++|..+++.+-
T Consensus 188 ~~~v~~g--~--~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 188 FGAAVVG--G--DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp TTEEEEC--C--TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred CCEEEEE--c--CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 6654432 1 124678899999999887763211100 01001 1246889999999999999999998875
Q ss_pred ecccccCCCceEEEeecCeEEEEEEcCeEEEEecc-cceeeeec---cccccCCCCCCCcEEEccCCcEEEEeccCCCCC
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPED 383 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fe---dh~l~~~~c~~n~~~it~~qd~ii~~~~~~~~~ 383 (396)
..... . ..-....++.+|++-.+|.+..+|.+ |+++-..+ ......|--.++.+|+.....-+..+=...+.-
T Consensus 264 ~~~~~--~-~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 264 KRELG--S-VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EECCC--C-EEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred eccCC--C-CCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE
Confidence 43321 1 22345678889998888999999975 56554443 233334445678888888777777665555554
Q ss_pred ccc
Q 016020 384 QWM 386 (396)
Q Consensus 384 ~~~ 386 (396)
.|.
T Consensus 341 ~~~ 343 (376)
T 3q7m_A 341 VAQ 343 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 453
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.047 Score=55.42 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=120.8
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc-eeecccCCCCeEEeeCCCCcEEEeecCCCe
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL-FESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L-F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~ 209 (396)
.+.++-+..+...|.+.+.....+-..| +.. ++.-|+. .++ .... ..+-+.|.+ .|+-++|...++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i--~v~---d~~tg~~---~~~~~~~~---~~~~~~wsp-Dg~~l~~~~~~~~ 193 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTI--KFM---KVDGAKE---LPDVLERV---KFSCMAWTH-DGKGMFYNAYPQQ 193 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEE--EEE---ETTTTEE---EEEEEEEE---CSCCEEECT-TSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEE--EEE---ECCCCCC---CcccccCc---ccceEEEEe-CCCEEEEEEECCc
Confidence 4666777776666666554433221222 222 2222221 011 1111 134577887 7898998887766
Q ss_pred ----------------EEEEeccCce----EEEEecc--CceEEEEEcCCe-EEEEEec-CCC-eeeeEEEEeec-----
Q 016020 210 ----------------YKVFDLKNYT----MLYSISD--KHVQEIKISPGI-MLLIFNR-SSS-HVPLKILSIED----- 259 (396)
Q Consensus 210 ----------------YrVwdlknYs----~lysIs~--~~VqEIkiSpg~-~Ll~~q~-~~~-~iplkIl~Iet----- 259 (396)
+.+|++.+.. ++|+-.+ ..+..+.+||+- .|++... ... .--+.++++.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 8899998865 6777654 347789999754 3444332 221 46788899988
Q ss_pred -Cc-EEEEEEeecccCCc-cchhhhhcceeeEeecC----CeeeEEEcccce---EEEeccc-ccCCCceEEEeecCeEE
Q 016020 260 -GT-VLKVFYHLLHRNKK-VDFIEQFNEKLLVKQEN----ENLQILDVRNAE---LMEVSRT-EFMTPSAFIFLYENQLF 328 (396)
Q Consensus 260 -G~-~l~s~~~~L~~sk~-i~FiE~~~ekLLIKQed----~~L~I~Dv~~~k---i~~v~~t-~~~~PsAFiFly~~qLF 328 (396)
|+ ....+. .+... .......|+.|++.... ..|.+||+.+++ ...+... .......+.|.+++.|+
T Consensus 274 ~~~~~~~~l~---~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 274 TGILKWVKLI---DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp CSSCCCEEEE---CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred CCccceEEee---CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 64 344443 22222 22233478889887753 359999998874 2333222 22355667777788898
Q ss_pred EEEEc-C--eEEEEec-ccceeeeecc
Q 016020 329 LTFRN-R--TVAVWNF-RGELVTSFED 351 (396)
Q Consensus 329 LTfs~-g--ti~iWd~-~geL~t~fed 351 (396)
++.+. + .+.+||+ .|+.+..+..
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECC
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCC
Confidence 88876 5 4666777 6765555543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.23 E-value=0.092 Score=45.91 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=125.2
Q ss_pred hccccceeeeccccceEEEecC---CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC-Ccce
Q 016020 105 AHSGVCAAFSRETNRRICFLNV---SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-FALF 180 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~---s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~-~~LF 180 (396)
...|.-..||..+|+..-+..+ ....-+.++.+...+..|.+++. . ..|.. .+. . |+...- ....
T Consensus 43 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~--~~l~~--~d~---~-g~~~~~~~~~~ 111 (314)
T 1pjx_A 43 KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---R--LGLLV--VQT---D-GTFEEIAKKDS 111 (314)
T ss_dssp EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---T--TEEEE--EET---T-SCEEECCSBCT
T ss_pred CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---C--CCEEE--EeC---C-CCEEEEEeccC
Confidence 4455566777777776544331 12234677887765355555332 1 12332 211 1 221000 0011
Q ss_pred eecccCCCCeEEeeCCCCcEEEeecCC---------------CeEEEEeccCceEEEEecc-CceEEEEEc----CCe-E
Q 016020 181 ESESLKWPGFVEFDDVNGKVLTYSAQD---------------SIYKVFDLKNYTMLYSISD-KHVQEIKIS----PGI-M 239 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~NgkIlt~~a~d---------------~~YrVwdlknYs~lysIs~-~~VqEIkiS----pg~-~ 239 (396)
......+|--+.+|+ +|++...+..+ +.+..||.. .+....+.. .....+.++ |+- .
T Consensus 112 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~ 189 (314)
T 1pjx_A 112 EGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQ 189 (314)
T ss_dssp TSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEE
T ss_pred CCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCE
Confidence 123346788999998 77877766554 455556655 443322222 456778888 664 5
Q ss_pred EEEEecCCCeeeeEEEEee-cCcEEEE-EEeeccc---C--CccchhhhhcceeeEe-ecCCeeeEEEcccceEEEeccc
Q 016020 240 LLIFNRSSSHVPLKILSIE-DGTVLKV-FYHLLHR---N--KKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRT 311 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~Ie-tG~~l~s-~~~~L~~---s--k~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t 311 (396)
|.+..... --+.+|++. +|+.... ....++. . ..+.+-+ .| .|++. ..++.|.+||..+++.......
T Consensus 190 l~v~~~~~--~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 265 (314)
T 1pjx_A 190 LIVAETPT--KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DN-NLLVANWGSSHIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp EEEEETTT--TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TC-CEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred EEEEECCC--CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence 55555442 346778887 5653221 1111111 1 1144443 44 55555 4678899999997777665555
Q ss_pred ccCCCceEEEeecCe-EEEEEEc-CeEEEEeccc
Q 016020 312 EFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 312 ~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~g 343 (396)
....|.+..|.++++ ||++-.. +.|..|+...
T Consensus 266 ~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 567899999988888 8887665 7888888764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.022 Score=58.41 Aligned_cols=179 Identities=16% Similarity=0.074 Sum_probs=122.4
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEecc--CceEEEEecc-CceEEEEEc-----CCeEEEEEecCCCeeeeEEEEee
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD-KHVQEIKIS-----PGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk--nYs~lysIs~-~~VqEIkiS-----pg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
.|-.+.|++ .|+-+-....|+.+.+||+. +.+.+.+|.. .+-..|.+| +|-.|++.....+. +.|+|..
T Consensus 198 ~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~--v~ViD~~ 274 (567)
T 1qks_A 198 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ--YVIMDGE 274 (567)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTE--EEEEETT
T ss_pred CccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCe--EEEEECC
Confidence 366889998 67765555678999999996 8898989875 778899999 68788887776544 4688999
Q ss_pred cCcEEEEEEeec--------c---cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCe
Q 016020 259 DGTVLKVFYHLL--------H---RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 259 tG~~l~s~~~~L--------~---~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~q 326 (396)
|++.++.+...- | +-..+-+.....+.++.-.+++.|.++|..+.+-.++ .......|..+-|.+++.
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 999998765210 0 1112333333345556667788899999877532221 112334566788999999
Q ss_pred EEEEEEc--CeEEEEeccc-ceeeeecc-ccccCCC------CCC-CcEEEcc
Q 016020 327 LFLTFRN--RTVAVWNFRG-ELVTSFED-HLLWHPD------CNT-NNIYITS 368 (396)
Q Consensus 327 LFLTfs~--gti~iWd~~g-eL~t~fed-h~l~~~~------c~~-n~~~it~ 368 (396)
.|++..+ ++|.+||+.. +++..++= -.-+||. -++ +.+|+|.
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~ 407 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 407 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeC
Confidence 8877765 8999999987 67776653 2334442 333 6678775
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.02 Score=50.52 Aligned_cols=179 Identities=15% Similarity=0.089 Sum_probs=114.6
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCc
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
.++|.-+.+|+.++.+...+...+.+.++|+.+-.....+.. .....|.+++ +-.|.+.....+. +..++.. |+
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~--I~~~~~~-g~ 111 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR--IEVAKMD-GT 111 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTE--EEEEETT-SC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCE--EEEEEcC-CC
Confidence 468899999998999999999999999999987654333433 5788999986 4455555554333 4455653 43
Q ss_pred EEEEEEe-ecccCCccchhhhhcceeeEeecC---CeeeEEEcccceEEEecccccCCCceEEEeec-CeEEEEEEc-Ce
Q 016020 262 VLKVFYH-LLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFRN-RT 335 (396)
Q Consensus 262 ~l~s~~~-~L~~sk~i~FiE~~~ekLLIKQed---~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~-~qLFLTfs~-gt 335 (396)
....+.. -+..-..+.+-+ .+.+|++-..+ ..|..+++.......+.......|....+.++ +.||++=+. +.
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp SCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 3322210 011112244433 46788877654 57778887544433344455678999999985 678888877 89
Q ss_pred EEEEecccc-eeeeeccccccCCC---CCCCcEEEccC
Q 016020 336 VAVWNFRGE-LVTSFEDHLLWHPD---CNTNNIYITSD 369 (396)
Q Consensus 336 i~iWd~~ge-L~t~fedh~l~~~~---c~~n~~~it~~ 369 (396)
|..+|.+|. +.+.++. +.+|+ ...+.+|++.-
T Consensus 191 I~~~~~~g~~~~~~~~~--~~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp EEEEETTEEEEEEEEEC--CCSEEEEEEETTEEEEEET
T ss_pred EEEEecCCCceEEEecC--CCCceEEEEeCCEEEEEEC
Confidence 999999984 4333332 22333 23566777654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0019 Score=65.59 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=94.8
Q ss_pred CeEEeeCCCCcEEEeecC-----CCeEEEEeccCceEE-E-EeccCceEEEEEcCCeEEEEEecCCC-----------ee
Q 016020 189 GFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTML-Y-SISDKHVQEIKISPGIMLLIFNRSSS-----------HV 250 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~-----d~~YrVwdlknYs~l-y-sIs~~~VqEIkiSpg~~Ll~~q~~~~-----------~i 250 (396)
+-+.|.+ +|+.|||... +..++|||+.+.+.+ - .+.+.....+.|||+--.+++..... .-
T Consensus 124 ~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 124 GTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 4567886 8999997654 468999999999864 1 23333337899997754444443311 23
Q ss_pred eeEEEEeecCcEEEEEEeecccC----CccchhhhhcceeeEeecCC----eeeEEEcccceEEEecccccCCCceEEEe
Q 016020 251 PLKILSIEDGTVLKVFYHLLHRN----KKVDFIEQFNEKLLVKQENE----NLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~L~~s----k~i~FiE~~~ekLLIKQed~----~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl 322 (396)
-+.+|++.+|+....+.+-.+.. ..+.|.+ .|++|++...+. .|.++|..+++...+.... ......++
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~- 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV-GAKYEVHA- 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS-SCCEEEEE-
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC-CceEEEEe-
Confidence 38889999887322222111111 1367777 899999887655 6777777777776654433 33445555
Q ss_pred ecCeEEEEEEc-----CeEEEEeccc
Q 016020 323 YENQLFLTFRN-----RTVAVWNFRG 343 (396)
Q Consensus 323 y~~qLFLTfs~-----gti~iWd~~g 343 (396)
++++++++ ++ +.|.+||+++
T Consensus 280 ~~g~l~~~-s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 280 WKDRFYVL-TDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp ETTEEEEE-ECTTCTTCEEEEEBTTB
T ss_pred cCCcEEEE-ECCCCCCCEEEEEeCCC
Confidence 66664444 54 6899999975
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.13 Score=44.28 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=139.6
Q ss_pred ccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCccee-ecc
Q 016020 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE-SES 184 (396)
Q Consensus 106 ~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~-~~~ 184 (396)
..|.-..||.. ++..-+..+....-+++|.....+. +.+ +.... ..+.. ++ .. |+. ..+. ...
T Consensus 39 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~~~---~~v~~--~d---~~-g~~----~~~~~~~~ 102 (300)
T 2qc5_A 39 KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWF-TENGA---NKIGK--LS---KK-GGF----TEYPLPQP 102 (300)
T ss_dssp TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEE-EETTT---TEEEE--EC---TT-SCE----EEEECSST
T ss_pred CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEE-EecCC---CeEEE--EC---CC-CCe----EEecCCCC
Confidence 45666777766 7766554444446788888875443 333 22111 11211 11 01 221 1111 112
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec--cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs--~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
...|--+.+|+ +|++...+..++.+.+||...-...+.+. ...+..|.+.++-.|.+.....+ -+..++. +|+.
T Consensus 103 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~--~i~~~~~-~g~~ 178 (300)
T 2qc5_A 103 DSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN--SIGRITN-TGKL 178 (300)
T ss_dssp TCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--EEEEECT-TCCE
T ss_pred CCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCC--eEEEECC-CCcE
Confidence 35688888997 78888877777888889988333335554 36788999976444555554322 3566776 6765
Q ss_pred EEEEEeeccc-CCc---cchhhhhcceeeEee-cCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEEEEEEc-Ce
Q 016020 263 LKVFYHLLHR-NKK---VDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFRN-RT 335 (396)
Q Consensus 263 l~s~~~~L~~-sk~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLFLTfs~-gt 335 (396)
.. +. ++. ... +.+-+ .+ .|++.. .+..|..||. +++.... .++....|.+..+.++++||++-.. +.
T Consensus 179 ~~-~~--~~~~~~~~~~i~~d~-~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 252 (300)
T 2qc5_A 179 EE-YP--LPTNAAAPVGITSGN-DG-ALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ 252 (300)
T ss_dssp EE-EE--CSSTTCCEEEEEECT-TS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred EE-ee--CCCCCCCcceEEECC-CC-CEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe
Confidence 53 32 221 111 33333 34 566665 4567999999 7776664 3456778999999999999998865 89
Q ss_pred EEEEecccceee-eeccccccCCC----CCCCcEEEccC
Q 016020 336 VAVWNFRGELVT-SFEDHLLWHPD----CNTNNIYITSD 369 (396)
Q Consensus 336 i~iWd~~geL~t-~fedh~l~~~~----c~~n~~~it~~ 369 (396)
|..||..|++.. .+..... .+. -+++++|++..
T Consensus 253 i~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 253 IGRITNDNTIQEYQLQTENA-EPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEECTTSCEEEEECCSTTC-CCCCEEECTTSCEEEECS
T ss_pred EEEECCCCcEEEEECCccCC-ccceeEeCCCCCEEEEcc
Confidence 999999886543 2322211 122 24567777665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0061 Score=62.49 Aligned_cols=149 Identities=10% Similarity=0.093 Sum_probs=92.9
Q ss_pred eEEeeCCCCcEEEeecCC-----CeEEEEeccCceEEEE-eccCceEEEEEcCCeEEEEEecCCC------------eee
Q 016020 190 FVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTMLYS-ISDKHVQEIKISPGIMLLIFNRSSS------------HVP 251 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d-----~~YrVwdlknYs~lys-Is~~~VqEIkiSpg~~Ll~~q~~~~------------~ip 251 (396)
.+.|.+ +|+.|+|...+ ..++|||+.+.+.+-. +.+..+..+.|||+ --+++..... ..-
T Consensus 167 ~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 167 AWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp EEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCE
T ss_pred eEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCE
Confidence 567886 89999887764 5799999999986432 22222368899998 5555544322 123
Q ss_pred eEEEEeecCcEEEEEEeecccC----CccchhhhhcceeeEeecC-----CeeeEEEcccc--e-EEEecccccCCCceE
Q 016020 252 LKILSIEDGTVLKVFYHLLHRN----KKVDFIEQFNEKLLVKQEN-----ENLQILDVRNA--E-LMEVSRTEFMTPSAF 319 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~L~~s----k~i~FiE~~~ekLLIKQed-----~~L~I~Dv~~~--k-i~~v~~t~~~~PsAF 319 (396)
+.++++.+|+....+.+-.+.. ..+.|.+ .|.+|++-..+ ..|.+||+.++ + ...+.... ......
T Consensus 245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~ 322 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL-KAQWDF 322 (741)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS-SSCEEE
T ss_pred EEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC-CceEEE
Confidence 6677887776322222111111 1366776 89999988754 48999999987 6 55554333 233344
Q ss_pred EEeecCeEEEEEEc-----CeEEEEeccc
Q 016020 320 IFLYENQLFLTFRN-----RTVAVWNFRG 343 (396)
Q Consensus 320 iFly~~qLFLTfs~-----gti~iWd~~g 343 (396)
++ ++++.++..++ +.+-+||+++
T Consensus 323 ~~-~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 323 VD-GVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EE-EETTEEEEEECTTCTTCEEEEEECSS
T ss_pred Ee-ccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 44 66655555554 3589999876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.044 Score=52.54 Aligned_cols=132 Identities=9% Similarity=-0.022 Sum_probs=93.3
Q ss_pred eEEEEeccCceEEEEeccCceEEEEEcCC-eEEEEEecC-------CCeeeeEEEEeecCcEEEEEEee-cc------cC
Q 016020 209 IYKVFDLKNYTMLYSISDKHVQEIKISPG-IMLLIFNRS-------SSHVPLKILSIEDGTVLKVFYHL-LH------RN 273 (396)
Q Consensus 209 ~YrVwdlknYs~lysIs~~~VqEIkiSpg-~~Ll~~q~~-------~~~iplkIl~IetG~~l~s~~~~-L~------~s 273 (396)
.+.|||+.+.+.+-.|..-..-.|.+||+ -.|.+.+.. +..-.+.++|..+++.+..+... .. .-
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 78999999999998998744449999964 566666532 11235778999999998877632 11 11
Q ss_pred CccchhhhhcceeeEeec--CCeeeEEEcccceEEEe-cccccCCCceEEEeecC-eEEEEEEc-CeEEEEeccccee
Q 016020 274 KKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEV-SRTEFMTPSAFIFLYEN-QLFLTFRN-RTVAVWNFRGELV 346 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQe--d~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~-qLFLTfs~-gti~iWd~~geL~ 346 (396)
..+.|.+ .|.+|++-.. +..|.++| .+++++.. -+ .|.+.++.+++ .+|++++. |++.+||..|+.+
T Consensus 128 ~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~ 199 (373)
T 2mad_H 128 WMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA 199 (373)
T ss_pred cceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCceEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence 2366666 8999999864 47799999 99988754 32 34456666654 67888776 8999999855433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.1 Score=45.93 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=146.1
Q ss_pred ccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 016020 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (396)
Q Consensus 97 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 176 (396)
.++.|.+.+..|--.+|| .+|+.+-... .+..++.++..-.. ..|.+ .. ++ |.+...+-+.+..-+.
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~-g~l~v-~t---~~---l~~~d~~g~~~~~~~~--- 95 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFK-SGEIIECRPSIGKD-GTIYF-GS---DK---VYAINPDGTEKWRFDT--- 95 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSC-GGGEEEECCEETTT-TEECC-SS---CE---EEEECCCGGGGGGSCC---
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEe-cCCCcccceEEecC-CcEEE-ec---Cc---EEEECCCCcEEEEEEC---
Confidence 567788888777778999 8888755433 34567788877542 33333 11 11 4443322122211111
Q ss_pred CcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeE
Q 016020 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLK 253 (396)
Q Consensus 177 ~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplk 253 (396)
....+..|. .+ +|.+.... .++.+..+|.+ .+.+++... ..+..+.+. +|.+. +... .--+.
T Consensus 96 ----~~~~~~~~~---~~--~~~l~v~t-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~-vgt~---~~~l~ 160 (330)
T 3hxj_A 96 ----KKAIVSDFT---IF--EDILYVTS-MDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIY-VGSN---DNYLY 160 (330)
T ss_dssp ---------CCEE---EE--TTEEEEEC-TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEE-EECT---TSEEE
T ss_pred ----CCCcccCce---EE--CCEEEEEe-cCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEE-EEcC---CCEEE
Confidence 111222222 22 46665533 45666677887 666655543 344555666 55543 3222 24577
Q ss_pred EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc
Q 016020 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~ 333 (396)
.++.+ |+.+..+.. +...--...+-.+..|++.. +.|..|| .+++...........+.+.....++.+++.-.+
T Consensus 161 ~~d~~-g~~~~~~~~--~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ 234 (330)
T 3hxj_A 161 AINPD-GTEKWRFKT--NDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLD 234 (330)
T ss_dssp EECTT-SCEEEEEEC--SSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETT
T ss_pred EECCC-CCEeEEEec--CCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCC
Confidence 78888 888776652 22111122222366788888 8899999 777666544444456677777778899999888
Q ss_pred CeEEEEecccceeeeecccc--ccCCCC-CCCcEEEccCCcEEEEeccCCCCCcc
Q 016020 334 RTVAVWNFRGELVTSFEDHL--LWHPDC-NTNNIYITSDQDLIISYCKAEPEDQW 385 (396)
Q Consensus 334 gti~iWd~~geL~t~fedh~--l~~~~c-~~n~~~it~~qd~ii~~~~~~~~~~~ 385 (396)
+.+-.+|..|+.+..+.... ...+-. .++++|++....-|..+= +++.-.|
T Consensus 235 ~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d-~~g~~~~ 288 (330)
T 3hxj_A 235 GHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN-PDGTEKW 288 (330)
T ss_dssp TEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC-TTSCEEE
T ss_pred CeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC-CCCcEEE
Confidence 88888898887665554332 222222 378899988876777763 3433334
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.17 Score=51.80 Aligned_cols=202 Identities=12% Similarity=0.155 Sum_probs=116.4
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc-eeecccCCCCeEEeeCCCCcEEEeecCCCe
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL-FESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L-F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~ 209 (396)
.+.++-...+...|.+.+.....+-.. .+.. ++.-|+. .++ ..... -+-+.|.+ . +-++|...+..
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~--i~v~---dl~tg~~---~~~~~~~~~---~~~~~wsp-D-~~l~~~~~~~~ 230 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRT--VKFV---GVADGKP---LADELKWVK---FSGLAWLG-N-DALLYSRFAEP 230 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEE--EEEE---ETTTCCE---EEEEEEEEE---SCCCEEST-T-SEEEEEECCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEE--EEEE---ECCCCCC---CCccCCCce---eccEEEEC-C-CEEEEEEecCc
Confidence 566777777777776655443322122 2222 2333332 111 01111 12355666 3 66666665443
Q ss_pred --------------EEEEeccCce----EEEEeccC--ceEEEEEcCCe-EEEEEecCC--CeeeeEEEEeecCcE--EE
Q 016020 210 --------------YKVFDLKNYT----MLYSISDK--HVQEIKISPGI-MLLIFNRSS--SHVPLKILSIEDGTV--LK 264 (396)
Q Consensus 210 --------------YrVwdlknYs----~lysIs~~--~VqEIkiSpg~-~Ll~~q~~~--~~iplkIl~IetG~~--l~ 264 (396)
+.+|++.+.. .+|.-.+. .+..+.+||+- .|++..... ..--+.++++.+|+. ..
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 7788886654 77777664 48899999754 454444332 345788999999832 34
Q ss_pred EEEeecccC-CccchhhhhcceeeEeec----CCeeeEEEccc--ceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 265 VFYHLLHRN-KKVDFIEQFNEKLLVKQE----NENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 265 s~~~~L~~s-k~i~FiE~~~ekLLIKQe----d~~L~I~Dv~~--~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
.+. .+. .....+...++.|++..+ +..|.+||+.+ ++...+.+.+......+-+. ++.|+++.+. ++.
T Consensus 311 ~l~---~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 311 ALI---PDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEE---CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred Eec---CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 333 222 222223358899998875 34599999988 45666655554445556665 7778777665 777
Q ss_pred EEEec--ccceeeee
Q 016020 337 AVWNF--RGELVTSF 349 (396)
Q Consensus 337 ~iWd~--~geL~t~f 349 (396)
.||.+ .|.....+
T Consensus 387 ~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEeCCCCceeec
Confidence 77755 46544433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.11 Score=53.99 Aligned_cols=144 Identities=11% Similarity=0.107 Sum_probs=95.3
Q ss_pred CCCCeEEeeCCCC---cEEEeecCCCeEEEEeccCceEEEEeccCce---------------------------------
Q 016020 186 KWPGFVEFDDVNG---KVLTYSAQDSIYKVFDLKNYTMLYSISDKHV--------------------------------- 229 (396)
Q Consensus 186 ~~PgfVEFDd~Ng---kIlt~~a~d~~YrVwdlknYs~lysIs~~~V--------------------------------- 229 (396)
..|-.++... +| +.+.....++.+.++|.++.+.+..+.-..+
T Consensus 313 ~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G 391 (677)
T 1kb0_A 313 QPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (677)
T ss_dssp SCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred CCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc
Confidence 4566676653 57 6777777899999999999999988763211
Q ss_pred ----EEEEEcCC--eEEEEEec---------------------------------------CCCeeeeEEEEeecCcEEE
Q 016020 230 ----QEIKISPG--IMLLIFNR---------------------------------------SSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 230 ----qEIkiSpg--~~Ll~~q~---------------------------------------~~~~iplkIl~IetG~~l~ 264 (396)
+-+.++|. ++.+-.+. ....-.|..||+.||+.+-
T Consensus 392 ~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W 471 (677)
T 1kb0_A 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (677)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe
Confidence 12455553 33322110 0012568899999999998
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEEEEEcC
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFRNR 334 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFLTfs~g 334 (396)
...+-.+. .-.-+. ..++.+++...++.|.+||..|++.+. +......+|. +|..+++.|+...+|
T Consensus 472 ~~~~~~~~-~~g~~~-~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~--~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 472 SVEHVSPW-NGGTLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS--TYMVDGRQYVSVAVG 540 (677)
T ss_dssp EEEESSSC-CCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEEC
T ss_pred ecCCCCCC-cCcceE-eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCE--EEEeCCEEEEEEecc
Confidence 87742211 111222 257889999999999999999999876 4444444554 446888888887655
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.061 Score=51.98 Aligned_cols=158 Identities=9% Similarity=0.037 Sum_probs=97.8
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCC-eEEEEeccCceEEEEe------ccCceEEEEEcC-CeEEEEEecCCCeeeeEEEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLKNYTMLYSI------SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~-~YrVwdlknYs~lysI------s~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~ 256 (396)
...|. +-||+..+.+.+.+...+ .+.+||..+-..+-.+ .......+.++| +=.|++.... --+..|+
T Consensus 171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~---~~I~~~d 246 (409)
T 3hrp_A 171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN---KNFGRFN 246 (409)
T ss_dssp CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTT---CEEEEEE
T ss_pred CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECC---CcEEEEE
Confidence 44566 899996555555555443 7888887765444445 336788999998 4444454332 3677888
Q ss_pred eecCcEEEEEEe-e---cccC--CccchhhhhcceeeEeecCCeeeEEEcccceEEEecc--------------cccCCC
Q 016020 257 IEDGTVLKVFYH-L---LHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--------------TEFMTP 316 (396)
Q Consensus 257 IetG~~l~s~~~-~---L~~s--k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~--------------t~~~~P 316 (396)
..+|+...-... . .... ..+.|.+..+.-++.-..++.|..||.... +..+.- +.+..|
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 247 VKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp TTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred CCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCC
Confidence 888764322110 0 0111 156666633433444456778888886543 322211 226789
Q ss_pred ceEEEeecCeEEEEEE-c-CeEEEEe-cccceee
Q 016020 317 SAFIFLYENQLFLTFR-N-RTVAVWN-FRGELVT 347 (396)
Q Consensus 317 sAFiFly~~qLFLTfs-~-gti~iWd-~~geL~t 347 (396)
....|.++++||++=+ . +.|..|| -.|++.+
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 9999999999999987 4 8999999 5666443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.26 Score=46.47 Aligned_cols=181 Identities=10% Similarity=0.043 Sum_probs=120.0
Q ss_pred EEeeCCCCcEEEeecC--CCeEEEEeccCceEEEEec--c-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~--d~~YrVwdlknYs~lysIs--~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
++|++ +|+....+.+ ++.++++|+++.+.+-++. + ....-+.+.++.+. +..-. .--+.++|.+|++.+.+
T Consensus 26 l~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~ly-v~t~~--~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 26 LVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLY-QVVWL--KNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEE-EEETT--CSEEEEEETTTTEEEEE
T ss_pred EEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEE-EEEec--CCEEEEEECCCCcEEEE
Confidence 78887 4777666655 7899999999999988875 2 34455778777543 33333 34477899999999998
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc-----CCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-----MTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~-----~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+..- .....- +...++.|++-..+..|.++|..+.+....-.... ..|-+..|. +++||++... ++|.+=
T Consensus 102 i~~g--~~~g~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQ--MKDGWG-LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EECC--SSSCCE-EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECC--CCCeEE-EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 8742 112233 33378999998888999999999987766322221 135566777 8899999864 899999
Q ss_pred eccc-ceeeeecccccc-------CC-CCCCCcEEEccCCcEEEEeccC
Q 016020 340 NFRG-ELVTSFEDHLLW-------HP-DCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 340 d~~g-eL~t~fedh~l~-------~~-~c~~n~~~it~~qd~ii~~~~~ 379 (396)
|.+. +.+..++=.-+. .+ .-.-|-|.++.+.+.+..-+|.
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 9966 666655422110 11 1223455566666655555553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.26 Score=44.61 Aligned_cols=191 Identities=8% Similarity=-0.008 Sum_probs=116.2
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEe-cc---CceEEEEEcC-CeEEEEEecCC----------
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSI-SD---KHVQEIKISP-GIMLLIFNRSS---------- 247 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysI-s~---~~VqEIkiSp-g~~Ll~~q~~~---------- 247 (396)
...|--+-+|+.+|++...+...+ +.++|..+.+ .+... .+ ....+|++.+ +=.|.+.....
T Consensus 79 ~~~p~gi~~~~~~g~l~v~d~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 79 CGRTYDISYNLQNNQLYIVDCYYH-LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp HCCEEEEEEETTTTEEEEEETTTE-EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCCceEEEcCCCCcEEEEECCCC-EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 346777889865788887766555 6677877653 22211 11 3467899987 32344443321
Q ss_pred -----CeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccc---eEEEecccccCCCce
Q 016020 248 -----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNA---ELMEVSRTEFMTPSA 318 (396)
Q Consensus 248 -----~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~---ki~~v~~t~~~~PsA 318 (396)
..--+-.++..+|+...... -+....-|.|.+ .+..|++-. .+..|..||+... +........ - |..
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~g 233 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP-N-PGN 233 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-S-EEE
T ss_pred hcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-C-CCC
Confidence 12346666766676443222 234445577666 677788774 5688999998752 222211111 1 888
Q ss_pred EEEeecCeEEEEEEc-----------CeEEEEecccceeeeecccc---ccCCC---CCCCcEEEccCCcEEEEeccCC
Q 016020 319 FIFLYENQLFLTFRN-----------RTVAVWNFRGELVTSFEDHL---LWHPD---CNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 319 FiFly~~qLFLTfs~-----------gti~iWd~~geL~t~fedh~---l~~~~---c~~n~~~it~~qd~ii~~~~~~ 380 (396)
..+-.++.||++-.. +.|..+|-+|+++..+...- +..+. -.++++||+....=-|.-++.+
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 888889999999864 67899999999888776542 11121 1468899986544444455544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.03 Score=53.64 Aligned_cols=108 Identities=9% Similarity=-0.077 Sum_probs=74.7
Q ss_pred CeEEEEEec-CCCee-eeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee----------cCCeeeEEEcccce
Q 016020 237 GIMLLIFNR-SSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----------ENENLQILDVRNAE 304 (396)
Q Consensus 237 g~~Ll~~q~-~~~~i-plkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ----------ed~~L~I~Dv~~~k 304 (396)
+..+.+... ..+.+ .+.++|..+|+.+..+. ....-.+.|.+ ++..|++-. .+..+.+||..+.+
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGFLPNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEEEEec--CCCCCCeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 344444443 22223 78889999999887655 23333688888 999999986 36789999999987
Q ss_pred EEEeccc----c---cCCCceEEEeecCeE-EEEEE--cCeEEEEeccc-ceeee
Q 016020 305 LMEVSRT----E---FMTPSAFIFLYENQL-FLTFR--NRTVAVWNFRG-ELVTS 348 (396)
Q Consensus 305 i~~v~~t----~---~~~PsAFiFly~~qL-FLTfs--~gti~iWd~~g-eL~t~ 348 (396)
.+..-+. . ...|..+.|.++++. |++-. +++|.++| +. +++..
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 7663222 1 357999999998775 55432 47899999 76 66666
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.29 Score=42.96 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=107.3
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecC
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.+.+|.-+-+|+.+|.+...+...+.+.++|+.+-....-+.. ..-..|.++| +-.|.+.....+.--+..+++ +|
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~-dg 155 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM-DG 155 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET-TS
T ss_pred CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec-CC
Confidence 4578999999998999999999999999999975432222222 5788999997 455545544311122334444 45
Q ss_pred cEEEEEE-eecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 261 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 261 ~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
+....+. ..+..-..+.+-+ .+.+|++-. ....|..+|+..++...+.. ....|.+.- ..++.||++-.. +.|.
T Consensus 156 ~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~-~d~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 156 TNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVT-SYGKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEE-EETTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEE-EeCCEEEEEECCCCeEE
Confidence 5443332 1112222355544 567787765 55789999998776655543 456777754 568899998766 8999
Q ss_pred EEecc-cceeeeec
Q 016020 338 VWNFR-GELVTSFE 350 (396)
Q Consensus 338 iWd~~-geL~t~fe 350 (396)
.+|.+ |+.++.+.
T Consensus 233 ~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 233 AMDLAISKEMDTFH 246 (267)
T ss_dssp EEETTTTEEEEEEC
T ss_pred EEeCCCCCceEEEc
Confidence 99997 57777665
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.044 Score=50.60 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=79.2
Q ss_pred CCCCeEEeeCCCCcEEEeecC--CCeEEEEeccCceEEEEecc---------CceEEEEEcC-CeEEEEEecC--CCeee
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISD---------KHVQEIKISP-GIMLLIFNRS--SSHVP 251 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~--d~~YrVwdlknYs~lysIs~---------~~VqEIkiSp-g~~Ll~~q~~--~~~ip 251 (396)
.+|.-|.+++ +|++....+. ++.++||.+.+.+. ..+.+ ..++.|++++ |.+..+.... ...--
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 7899999997 6888876542 33377887765543 32221 5789999997 5444333221 00235
Q ss_pred eEEEEeecCcEEEEEEee---cccC---CccchhhhhcceeeEee----cCCeeeEEEcccceEEEeccc
Q 016020 252 LKILSIEDGTVLKVFYHL---LHRN---KKVDFIEQFNEKLLVKQ----ENENLQILDVRNAELMEVSRT 311 (396)
Q Consensus 252 lkIl~IetG~~l~s~~~~---L~~s---k~i~FiE~~~ekLLIKQ----ed~~L~I~Dv~~~ki~~v~~t 311 (396)
+.+||..+|+.+..+.+. ..+. ..+.|-. .+..+++-. .+..|.+||+.+++..++...
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 788999999988777631 0111 2344433 345777765 467899999999998887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.36 Score=45.35 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=117.1
Q ss_pred EEeeCCCCcEEEeecCC--CeEEEEeccCceEEEEecc--Cce-EEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISD--KHV-QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d--~~YrVwdlknYs~lysIs~--~~V-qEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
++||+ |....+.... +.++++|+++.+.+-++.- .-+ .-|.+.++.+..+.-.. --+-++|.+|++.+.+
T Consensus 26 L~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~---~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 26 LFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN---HEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS---SEEEEEETTTTEEEEE
T ss_pred EEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC---CEEEEEECCcCcEEEE
Confidence 57888 7777777774 6999999999998888763 222 33666666655543332 4577999999999999
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEe-----ecCeEEEEEE-cCeEEEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----YENQLFLTFR-NRTVAVW 339 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl-----y~~qLFLTfs-~gti~iW 339 (396)
+... ....-.- ..+..|++-.....|.++|-.|.+++..-.- ...+..+-++ .++++|.... ++.|.+-
T Consensus 101 i~~~---~~Gwglt-~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V-~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vI 175 (243)
T 3mbr_X 101 FRYP---GEGWALT-SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV-TAGGRPLDNLNELEWVNGELLANVWLTSRIARI 175 (243)
T ss_dssp EECS---SCCCEEE-ECSSCEEEECSSSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred EeCC---CCceEEe-eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE-ccCCcccccceeeEEeCCEEEEEECCCCeEEEE
Confidence 9842 2222322 2677888888888999999999877763222 2245555554 3899998885 4899999
Q ss_pred eccc-ceeeeecccccc---------CCCCCCCcEEEccCCcEEEE
Q 016020 340 NFRG-ELVTSFEDHLLW---------HPDCNTNNIYITSDQDLIIS 375 (396)
Q Consensus 340 d~~g-eL~t~fedh~l~---------~~~c~~n~~~it~~qd~ii~ 375 (396)
|.+. +.+..++=.-|. ..+.+++.+|...++-|.|-
T Consensus 176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 9865 665555533222 22355566666555555554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.11 Score=49.68 Aligned_cols=182 Identities=12% Similarity=0.136 Sum_probs=111.8
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeec
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Iet 259 (396)
..+.+|-=+.||..+|++.-.+...+.+..|++.+-.....+.. .....|.+.+ +-.|.+.....+ -+.+++..
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~--~I~~~~~d- 189 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLD- 189 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTT--EEEECBTT-
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCC--eEEEEeCC-
Confidence 45778999999998999999999999999999987653333332 3445577763 333334433323 23334443
Q ss_pred CcEEEEEE-eecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-C
Q 016020 260 GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-R 334 (396)
Q Consensus 260 G~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-g 334 (396)
|+....+. .-|.+-..|.+-+ .+.+|++-..+ ..|..+|+.......+..+....|.+..+.+ ++.||++=+. +
T Consensus 190 g~~~~~l~~~~l~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CCceEEeecCCCCCCcEEEEEc-CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 43332221 1111111233222 46677776544 5788888876655555556777899999985 7788988766 8
Q ss_pred eEEEEecccc-eeeeeccccccCCC---CCCCcEEEccC
Q 016020 335 TVAVWNFRGE-LVTSFEDHLLWHPD---CNTNNIYITSD 369 (396)
Q Consensus 335 ti~iWd~~ge-L~t~fedh~l~~~~---c~~n~~~it~~ 369 (396)
.|..+|++|. +.+-+... +.+|+ -.++.+|+|.-
T Consensus 269 ~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~ 306 (386)
T 3v65_B 269 VIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDW 306 (386)
T ss_dssp EEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEET
T ss_pred EEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeC
Confidence 9999999994 33333322 33443 34567777753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.14 Score=49.11 Aligned_cols=175 Identities=7% Similarity=0.040 Sum_probs=114.5
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEe-ccCce-EEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKHV-QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysI-s~~~V-qEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
++||+ +....+...++.++++|+++.+.+-++ .+.-+ .-|.+.++.+..+ +...--+-++|.+|++.+.++..
T Consensus 60 L~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~l---tw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 60 LVFHQ--GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQL---TWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEET--TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEE---ESSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEE---EccCCEEEEEECCcCcEEEEEeC
Confidence 57885 788888888989999999999966665 33323 3377777755433 32335678999999999999984
Q ss_pred ecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEe-----ecCeEEEEEEc-CeEEEEecc
Q 016020 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----YENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 269 ~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl-----y~~qLFLTfs~-gti~iWd~~ 342 (396)
- ..-.-.. ..+..|++-.....|.++|-.|.+++..-.- ...|..+-++ .+++||+.... ++|.+=|.+
T Consensus 135 ~---~eGwGLt-~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 135 S---GEGWGLC-YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV-KLRGQPVELINELECANGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp S---SCCCCEE-EETTEEEEECSSSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTEEEEEETTCSEEEEECTT
T ss_pred C---CceeEEe-cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe-CCCCcccccccccEEeCCEEEEEECCCCeEEEEeCC
Confidence 2 2222222 2577787777788999999999887763221 1234443333 28899998854 899999986
Q ss_pred c-ceeeeecccccc---------CCCCCCCcEEEccCCcEEEE
Q 016020 343 G-ELVTSFEDHLLW---------HPDCNTNNIYITSDQDLIIS 375 (396)
Q Consensus 343 g-eL~t~fedh~l~---------~~~c~~n~~~it~~qd~ii~ 375 (396)
. +.+..++=.-|. ..+.+++.+|...++-|.|-
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 5 665555543221 12344555555555555543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.13 Score=45.26 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=103.1
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEe--ccCceEEEEE-cCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysI--s~~~VqEIki-Spg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
+|.+... ..++.+..||.+ .+.+... ....+..+.+ ++|.+.+.. --+..++ .+|+.+..... + .
T Consensus 147 ~g~l~vg-t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t------~~l~~~d-~~g~~~~~~~~--~-~ 214 (330)
T 3hxj_A 147 DGTIYVG-SNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS------DKVYAIN-PDGTEKWNFYA--G-Y 214 (330)
T ss_dssp TSCEEEE-CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES------SSEEEEC-TTSCEEEEECC--S-S
T ss_pred CCEEEEE-cCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe------CEEEEEC-CCCcEEEEEcc--C-C
Confidence 5666553 345777778888 6654444 4566777777 456554333 3467788 88888776552 2 2
Q ss_pred Cccchhhhh-cceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecccceeeeecc-
Q 016020 274 KKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFED- 351 (396)
Q Consensus 274 k~i~FiE~~-~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~geL~t~fed- 351 (396)
..+.-+-.. +..|++...++.|..+|-...++.... .....+++.+...++.|++.-.+|.+..+|..|+++..+.-
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~ 293 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFK-TGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETG 293 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEE-CSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECS
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEee-CCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcC
Confidence 222222223 348999999999999985334444433 33334455555558999998888899999998876665432
Q ss_pred -ccccCCCC-CCCcEEEccCCcEEEE
Q 016020 352 -HLLWHPDC-NTNNIYITSDQDLIIS 375 (396)
Q Consensus 352 -h~l~~~~c-~~n~~~it~~qd~ii~ 375 (396)
.....+-- .++++|+....-++..
T Consensus 294 ~~~~~~~~~d~~g~l~~gt~~G~~~~ 319 (330)
T 3hxj_A 294 SWIIATPVIDENGTIYFGTRNGKFYA 319 (330)
T ss_dssp SCCCSCCEECTTCCEEEECTTSCEEE
T ss_pred CccccceEEcCCCEEEEEcCCCeEEE
Confidence 22222222 6788888877766544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.15 Score=48.10 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=111.5
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecC
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.+.+|--+.||..++++.-.+...+.+..|++.+......+.. .....|.+.+ +-.|.+.....+ -+.+++.. |
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~--~I~~~~~d-G 147 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLD-G 147 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTT--EEEEEETT-S
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCC--eEEEEcCC-C
Confidence 5678999999998999999999999999999987653333332 3455677763 333334443333 23344443 4
Q ss_pred cEEEEEE-eecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-Ce
Q 016020 261 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RT 335 (396)
Q Consensus 261 ~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gt 335 (396)
+....+. ..|.+-..|.+-+ .+.+|++-..+ ..|..+|+.......+..+....|.+..+.+ ++.||++=+. +.
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCcceEEEec-CcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 4333222 1111112233322 35677766543 5688888766555555556778899999996 7788988766 79
Q ss_pred EEEEecccc-eeeeeccccccCCC---CCCCcEEEccC
Q 016020 336 VAVWNFRGE-LVTSFEDHLLWHPD---CNTNNIYITSD 369 (396)
Q Consensus 336 i~iWd~~ge-L~t~fedh~l~~~~---c~~n~~~it~~ 369 (396)
|..+|.+|. +.+-+... +.+|+ -.++.+|+|.-
T Consensus 227 I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 227 IERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp EEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEEET
T ss_pred EEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEecC
Confidence 999999994 33333332 33443 34566777653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.55 Score=42.12 Aligned_cols=185 Identities=8% Similarity=0.080 Sum_probs=111.8
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
-..||.=.-+|+..+.++..+..++.+..|+...-...|......+..+.++++=.|++..... --+.+++.. |+..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~--~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGR--RAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTT--TEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCC--CEEEEECCC-CCEE
Confidence 3456666778873334777788888888999854445666666788899998654455554332 235556654 6543
Q ss_pred EEEEee----cccCCccchhhhhcceeeE-----e-------------ecCCeeeEEEcccceEEEecccccCCCceEEE
Q 016020 264 KVFYHL----LHRNKKVDFIEQFNEKLLV-----K-------------QENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (396)
Q Consensus 264 ~s~~~~----L~~sk~i~FiE~~~ekLLI-----K-------------Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF 321 (396)
.-.... +.+-..+.+-+ .| .|++ . +....|..||..++++..+. ....|....|
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~-dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~ 195 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVAR-DG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAF 195 (305)
T ss_dssp EEECEETTEECSCCCCEEECT-TS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEE
T ss_pred EEEeccCCCccCCCCCEEECC-CC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEE
Confidence 322110 11112344444 34 4555 2 12357888898888887775 6678899999
Q ss_pred eecCe-EEEEEEc------CeEEEEecccceee---eeccccccCCC----CCCCcEEEccCCcEEEEe
Q 016020 322 LYENQ-LFLTFRN------RTVAVWNFRGELVT---SFEDHLLWHPD----CNTNNIYITSDQDLIISY 376 (396)
Q Consensus 322 ly~~q-LFLTfs~------gti~iWd~~geL~t---~fedh~l~~~~----c~~n~~~it~~qd~ii~~ 376 (396)
.++++ ||++-+. +.|.+||.++.-++ .|.+.....|+ -.++++|++. .+=|..|
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~ 263 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVF 263 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEE
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEE
Confidence 99987 7777665 68999998863221 12111122333 3567788877 3434333
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.42 Score=45.53 Aligned_cols=154 Identities=10% Similarity=0.084 Sum_probs=102.7
Q ss_pred EEeeCCCCcEEEeecCC--CeEEEEeccCceEEEEecc--CceEE-EEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISD--KHVQE-IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d--~~YrVwdlknYs~lysIs~--~~VqE-IkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
++|++ |....+...+ +.++++|+++.+.+-++.- .-+-| |.+.++.+..+ +...--+-++|.+|++.+.+
T Consensus 48 L~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~l---tw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 48 FFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGL---TWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEE---ESSSSEEEEEETTTCCEEEE
T ss_pred EEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEE---EeeCCEEEEEECccCcEEEE
Confidence 47885 6777766664 5999999999998888753 22333 66666655433 32234678999999999999
Q ss_pred EEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccc---c-CCCceEEEeecCeEEEEEEc-CeEEEE
Q 016020 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTE---F-MTPSAFIFLYENQLFLTFRN-RTVAVW 339 (396)
Q Consensus 266 ~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~---~-~~PsAFiFly~~qLFLTfs~-gti~iW 339 (396)
+..- ..-.-.. ..+..|++-.....|.++|-.|.+++.. .-+. . ..+.+.-+. +++||+.... ++|.+-
T Consensus 123 i~~~---~eG~glt-~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 123 FNYD---GEGWGLT-HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EECS---SCCCCEE-ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECC---CCceEEe-cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 9842 1112222 2566677766677799999999877763 2211 1 222233444 8899998864 899999
Q ss_pred eccc-ceeeeeccccc
Q 016020 340 NFRG-ELVTSFEDHLL 354 (396)
Q Consensus 340 d~~g-eL~t~fedh~l 354 (396)
|.+. +.+..++-.-|
T Consensus 198 Dp~tG~V~~~Id~~~L 213 (262)
T 3nol_A 198 DPETGKVTGIIDLNGI 213 (262)
T ss_dssp CTTTCBEEEEEECTTG
T ss_pred ECCCCcEEEEEECCcC
Confidence 9866 66666665533
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=96.11 E-value=0.31 Score=48.34 Aligned_cols=142 Identities=10% Similarity=-0.022 Sum_probs=101.6
Q ss_pred CCcEEEeecC----CCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEEecC-------CCeeeeEEEEeecCcEE
Q 016020 197 NGKVLTYSAQ----DSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRS-------SSHVPLKILSIEDGTVL 263 (396)
Q Consensus 197 NgkIlt~~a~----d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~q~~-------~~~iplkIl~IetG~~l 263 (396)
..++...+.. ++.+-|.|..+.+.+-+|.- ..-. |.+|| |-.|.+...- ...-.+.+||..|++.+
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~ 122 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT 122 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence 4667777665 78999999999999999985 4445 99996 4455555421 11346899999999999
Q ss_pred EEEEeec-------ccCCccchhhhhcceeeEeec--CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-
Q 016020 264 KVFYHLL-------HRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 264 ~s~~~~L-------~~sk~i~FiE~~~ekLLIKQe--d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
.++...- .+-..+.|.+ +|.+|++-.. +..+.++|+.+++.+..-+... ..-++-.....|++++.
T Consensus 123 ~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~~~~~P~g~~~~~~~~~D 198 (386)
T 3sjl_D 123 ADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---CYHIFPTAPDTFFMHCRD 198 (386)
T ss_dssp EEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---EEEEEEEETTEEEEEETT
T ss_pred EEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---cceeecCCCceeEEECCC
Confidence 9876321 0122377777 9999999975 5789999999999887543321 13444445566777766
Q ss_pred CeEEEEeccc
Q 016020 334 RTVAVWNFRG 343 (396)
Q Consensus 334 gti~iWd~~g 343 (396)
|++.+.+...
T Consensus 199 G~~~~v~~~~ 208 (386)
T 3sjl_D 199 GSLAKVAFGT 208 (386)
T ss_dssp SCEEEEECCS
T ss_pred CCEEEEECCC
Confidence 8888888864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.09 E-value=0.4 Score=43.01 Aligned_cols=179 Identities=7% Similarity=0.052 Sum_probs=107.4
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
...+|.=.-+|+.++.++..+..++.+..||..+.+...--....+..|.++++=.|++... --+.+++.++|+..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~~----~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATIG----TKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEET----TEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEEC----CeEEEEECCCCcEE
Confidence 34456666778878889988888899999999887643222347889999986544555542 14678888888754
Q ss_pred EEEEee----cccCCccchhhhhcceeeEeec----------CCeeeEEEccc-ceEEEecccccCCCceEEEeecCe-E
Q 016020 264 KVFYHL----LHRNKKVDFIEQFNEKLLVKQE----------NENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQ-L 327 (396)
Q Consensus 264 ~s~~~~----L~~sk~i~FiE~~~ekLLIKQe----------d~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~q-L 327 (396)
.-.... ..+-..+.+-+ .|. |++..- ...-.||-+.. +++..+ ......|....|.++++ |
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~-dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDP-AGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-FDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECT-TSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-EEEESBEEEEEECTTSCEE
T ss_pred EEEecCCCCCCCCCCCEEECC-CCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEE-eeccccccceEEcCCCCEE
Confidence 432211 01112244444 444 666431 12335555543 444443 34556788999999886 6
Q ss_pred EEEEEc-CeEEEEecc---cce-----eeeeccccccCCC----CCCCcEEEccCC
Q 016020 328 FLTFRN-RTVAVWNFR---GEL-----VTSFEDHLLWHPD----CNTNNIYITSDQ 370 (396)
Q Consensus 328 FLTfs~-gti~iWd~~---geL-----~t~fedh~l~~~~----c~~n~~~it~~q 370 (396)
|++-+. +.|.+||++ |.+ ...+.++. -.|+ -+++++|++...
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~ 218 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYN 218 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEET
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcC
Confidence 777665 899999974 333 22333221 1222 256788887643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.3 Score=47.77 Aligned_cols=161 Identities=9% Similarity=0.048 Sum_probs=104.5
Q ss_pred eecccCCCCeEEeeC-CCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCC-eEEEEEecCCCeee-eEEEE
Q 016020 181 ESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVP-LKILS 256 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd-~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~ip-lkIl~ 256 (396)
+...+.+|.++-+|+ -.|.+...+.. +.++++|+.+.+...-+.. ..-..|.+++. -.|++.....+.+. ..++-
T Consensus 132 ~~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 132 DCGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp GCBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred HccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 344688999999996 37888777766 8899999988664333333 66888999864 44666665333221 12222
Q ss_pred eecCcEE--EEEEeecccCCccchhhhhcceeeE-eecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCe-EEEEE
Q 016020 257 IEDGTVL--KVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQ-LFLTF 331 (396)
Q Consensus 257 IetG~~l--~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~q-LFLTf 331 (396)
..+|+.. ..+. .+.+-..+.+-+. +.+|++ -..+..|..+|..+++...+ .......|....|.++++ ||++-
T Consensus 211 ~~~g~~~~~~~l~-~~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 211 TRESGFKVITELT-KGQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp EGGGTSCSEEEEE-ECSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eCCCceeeeeeec-cCCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 2344333 1222 1233344555442 455665 45778899999988876333 222335799999999998 88887
Q ss_pred Ec-CeEEEEecccc
Q 016020 332 RN-RTVAVWNFRGE 344 (396)
Q Consensus 332 s~-gti~iWd~~ge 344 (396)
.. +.|..++.+|+
T Consensus 289 ~~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 289 VNQHYILRSDYDWK 302 (430)
T ss_dssp TTTTEEEEEEEETT
T ss_pred CCCCEEEEEeCCcc
Confidence 66 89999998863
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.099 Score=53.48 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=89.2
Q ss_pred EEeeCCCCcEEEeecC-----CCeEEEEeccCceEEE-EeccCceEEEEEcCCeEEEEEecCCC--------eee--eEE
Q 016020 191 VEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKISPGIMLLIFNRSSS--------HVP--LKI 254 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~-----d~~YrVwdlknYs~ly-sIs~~~VqEIkiSpg~~Ll~~q~~~~--------~ip--lkI 254 (396)
+.|.+ +|+.+||... +..++|||+.+.+.+- .+.+.....+.||+|-.|+....... ..| +.+
T Consensus 134 ~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 134 LSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp EEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCCEEEE
T ss_pred EEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEE
Confidence 46777 8999998654 2578999999998543 23322236778886655544443321 223 666
Q ss_pred EEeecCcEEEEEEeeccc---C--CccchhhhhcceeeEeec----CCeeeEEEcccc--eEEEecccccCCCceEEEee
Q 016020 255 LSIEDGTVLKVFYHLLHR---N--KKVDFIEQFNEKLLVKQE----NENLQILDVRNA--ELMEVSRTEFMTPSAFIFLY 323 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~---s--k~i~FiE~~~ekLLIKQe----d~~L~I~Dv~~~--ki~~v~~t~~~~PsAFiFly 323 (396)
+++.+++....+.+-... . -.+.|.+ .+++|++... ...|.++|+.++ +...+.... ..-...+..+
T Consensus 213 ~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~ 290 (693)
T 3iuj_A 213 HRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-DADVSLVDNK 290 (693)
T ss_dssp EETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-SSCEEEEEEE
T ss_pred EECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-CceEEEEecc
Confidence 777776542222211111 1 1256666 8999987653 247899999876 555553332 2223334455
Q ss_pred cCeEEEEEEc----CeEEEEeccc
Q 016020 324 ENQLFLTFRN----RTVAVWNFRG 343 (396)
Q Consensus 324 ~~qLFLTfs~----gti~iWd~~g 343 (396)
+++++++-.. +.|-.||+++
T Consensus 291 g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 291 GSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTS
T ss_pred CCEEEEEECCCCCCCEEEEEeCCC
Confidence 5666555432 5788888876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=95.84 E-value=1.7 Score=43.39 Aligned_cols=235 Identities=9% Similarity=-0.003 Sum_probs=132.7
Q ss_pred ccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC-----Ccceee
Q 016020 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG-----FALFES 182 (396)
Q Consensus 108 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~-----~~LF~~ 182 (396)
|.-.++|..|++.+-.|-....= -|-++.....|.+.+.+.+....+=.-..+..=+...++.-.. .+-|.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~- 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL- 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-
T ss_pred CeEEEEECCCCEEEEEEECCCCC---ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-
Confidence 67889999999999888766543 4778888877777654322100000001111112222221000 00111
Q ss_pred cccCCCCeEEeeCCCCcEEEeecC-CCeEEEEeccCceEEEEeccCce---E------EEEEc-CCeEEEEEecCCCee-
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKHV---Q------EIKIS-PGIMLLIFNRSSSHV- 250 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~-d~~YrVwdlknYs~lysIs~~~V---q------EIkiS-pg~~Ll~~q~~~~~i- 250 (396)
....|.-+-|++-..++...+.. ++.+-|.|+++.+.+-+|.-... . -+.++ +|.++.+........
T Consensus 175 -~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 175 -VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp -BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred -cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 13579999999855555555543 68899999999999888874221 1 02233 344444444211111
Q ss_pred ---------------------------------eeEEEEeecCcEEE--EEEee---------cc-cCCccchhhhhcce
Q 016020 251 ---------------------------------PLKILSIEDGTVLK--VFYHL---------LH-RNKKVDFIEQFNEK 285 (396)
Q Consensus 251 ---------------------------------plkIl~IetG~~l~--s~~~~---------L~-~sk~i~FiE~~~ek 285 (396)
-+.++|..+++... .+... .+ ....+.|.+ .+.+
T Consensus 254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~r 332 (426)
T 3c75_H 254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDR 332 (426)
T ss_dssp EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTE
T ss_pred EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCE
Confidence 12223332222111 01100 00 001144444 6678
Q ss_pred eeEeec----------CCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEE--cCeEEEEeccc-ceeeee
Q 016020 286 LLVKQE----------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR--NRTVAVWNFRG-ELVTSF 349 (396)
Q Consensus 286 LLIKQe----------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs--~gti~iWd~~g-eL~t~f 349 (396)
|++--. +..+.++|..+.+.+..-+... .|....|.++++ ++++.. +++|.++|... +.+.++
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 888632 3579999999999887544332 699999999998 666666 59999999987 677776
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.83 E-value=0.77 Score=44.30 Aligned_cols=194 Identities=9% Similarity=0.071 Sum_probs=116.0
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc----eEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY----s~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~ 256 (396)
.+..|-=+.||..++++--.+...+.+..+++.+. ...-.+.. .....|.+.+ +-.|.+....... +.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~--I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE--EEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCe--EEEEe
Confidence 47789999999999999999999999999999762 22222332 5667788874 4444455544333 34566
Q ss_pred eecCcEEEEEEeecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc
Q 016020 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN 333 (396)
Q Consensus 257 IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~ 333 (396)
...+.....+...|..-..|.+-+ .+.+|++---+ ..|...|+.......+..+...+|.+..+.+ ++.||++=+.
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp-~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEET-TTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCceEEEEeCCCCCcceEEEec-ccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence 544333322321122112233322 46778776633 5788888876665555566778999999985 6778888655
Q ss_pred -CeEEEEecccc-eeeeecc-ccccCCC---CCCCcEEEccCC-cEEEEeccCC
Q 016020 334 -RTVAVWNFRGE-LVTSFED-HLLWHPD---CNTNNIYITSDQ-DLIISYCKAE 380 (396)
Q Consensus 334 -gti~iWd~~ge-L~t~fed-h~l~~~~---c~~n~~~it~~q-d~ii~~~~~~ 380 (396)
+.|...|++|. +.+-.+. ..+.+|. -..+.+|+|... .-|..+-|..
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 79999999994 3332222 1233333 234556666422 3344444433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.041 Score=53.75 Aligned_cols=122 Identities=5% Similarity=-0.195 Sum_probs=84.3
Q ss_pred EEEEecCCCee--eeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee----------cCCeeeEEEcccceEEE
Q 016020 240 LLIFNRSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----------ENENLQILDVRNAELME 307 (396)
Q Consensus 240 Ll~~q~~~~~i--plkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ----------ed~~L~I~Dv~~~ki~~ 307 (396)
+.+..+..+.+ -+.++|..+++.+..+..- ..--+.|.+ ++.+|++.. .+..|.+||..+++.+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG--~~P~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGA--FLSLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--TTCEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCC--CCCceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 44445544433 6889999999999988733 222588888 999999996 47889999999999887
Q ss_pred ecccc-------cCCCceEEEeecCeEEEEEE---cCeEEE--Eeccc--cee------eeeccccccCCCCCCCcE
Q 016020 308 VSRTE-------FMTPSAFIFLYENQLFLTFR---NRTVAV--WNFRG--ELV------TSFEDHLLWHPDCNTNNI 364 (396)
Q Consensus 308 v~~t~-------~~~PsAFiFly~~qLFLTfs---~gti~i--Wd~~g--eL~------t~fedh~l~~~~c~~n~~ 364 (396)
.-+.. ...|..+.|.++++..++.. ++.+.+ ||... ++- ..-+++.+|..+|+++++
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence 53322 25799999999986544443 368888 99965 111 123344455566666653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.59 Score=42.82 Aligned_cols=147 Identities=9% Similarity=0.041 Sum_probs=91.5
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE-EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l-ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
.+|.-.-||+.++.++..+..++.+.+||..+.+.. +.. +..+..|.++|+--+++.... -+.+|+.++|+...
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~v~~i~~~~dg~l~v~~~~----gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGSALAKISDSKQLIASDD----GLFLRDTATGVLTL 123 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEEEEEEEETTEEEEEETT----EEEEEETTTCCEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-CCcceEEEEeCCCeEEEEECC----CEEEEECCCCcEEE
Confidence 344556688877888888888888999999887632 333 468999999855444454422 27888988888543
Q ss_pred EEEee--c--ccCCccchhhhhcceeeEeecC-------CeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEE
Q 016020 265 VFYHL--L--HRNKKVDFIEQFNEKLLVKQEN-------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR 332 (396)
Q Consensus 265 s~~~~--L--~~sk~i~FiE~~~ekLLIKQed-------~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs 332 (396)
-.... . .+-..+.+-+ .| .|++...+ ..|-.+| ++++..+. .....|....|.++++ ||++-+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~-~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHP-SG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EECSSTTCTTEEEEEEEECT-TS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEET
T ss_pred EeeCCCCCCCCCCCCEEECC-CC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEee-CCCcccCCeEEcCCCCEEEEEEC
Confidence 22110 0 0011234443 34 46665432 3455555 67766543 3345678888998886 666654
Q ss_pred c-CeEEEEecc
Q 016020 333 N-RTVAVWNFR 342 (396)
Q Consensus 333 ~-gti~iWd~~ 342 (396)
. +.|.+||.+
T Consensus 199 ~~~~I~~~d~~ 209 (326)
T 2ghs_A 199 KVNRLMRVPLD 209 (326)
T ss_dssp TTCEEEEEEBC
T ss_pred CCCEEEEEEcc
Confidence 4 799999985
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.16 Score=50.33 Aligned_cols=131 Identities=22% Similarity=0.277 Sum_probs=93.2
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCceE---EEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
+-.+-| +|.+|+.. .++.++|||+..... ++.++ ..+.+++..+..++++ . +...|.+|++.+|....
T Consensus 90 V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~-~~v~~i~~~~p~~av~-~---~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 90 VIFVCF---HGDQVLVS-TRNALYSLDLEELSEFRTVTSFE-KPVFQLKNVNNTLVIL-N---SVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp EEEEEE---ETTEEEEE-ESSEEEEEESSSTTCEEEEEECS-SCEEEEEECSSEEEEE-E---TTSEEEEEETTTCCEEE
T ss_pred eeEEEE---CCCEEEEE-cCCcEEEEEchhhhccCccceee-cceeeEEecCCCEEEE-E---CCCCEEEEEccCCcccc
Confidence 345567 47888877 889999999876654 33333 5688999887753333 2 34688899999988653
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE--E-Eecc--------cccCCCceEEEeecCeEEEEEEc
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--M-EVSR--------TEFMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki--~-~v~~--------t~~~~PsAFiFly~~qLFLTfs~ 333 (396)
+. ..=.-+++.+ .| +.+.-.|+.+++|+..++++ . ++++ .+...+.+..++.+.+.++++..
T Consensus 161 -~~---~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 161 -LA---QNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp -EE---ESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred -cc---CCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 11 2223366666 45 67777889999999999885 3 3422 25788999999999999999887
Q ss_pred C
Q 016020 334 R 334 (396)
Q Consensus 334 g 334 (396)
.
T Consensus 234 ~ 234 (388)
T 1xip_A 234 V 234 (388)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.94 Score=46.07 Aligned_cols=84 Identities=6% Similarity=0.010 Sum_probs=57.3
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccc-cCCCceEEEeecCeEE
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLF 328 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~-~~~PsAFiFly~~qLF 328 (396)
-.|..||..||+.+-++...-+. .-.-. -.-+..+++...+..|.+||..++|++-..++. ...-+..++..++.+|
T Consensus 444 g~l~a~D~~tG~~~W~~~~~~~~-~~~~~-~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~y 521 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEKFAA-WGGTL-YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC-CSBCE-EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEECCCCCEEEEecCCCCc-cceeE-EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEE
Confidence 56888999999998887632111 00111 124788999999999999999999988533322 1222334567899999
Q ss_pred EEEEcCe
Q 016020 329 LTFRNRT 335 (396)
Q Consensus 329 LTfs~gt 335 (396)
+...+|.
T Consensus 522 v~~~~G~ 528 (571)
T 2ad6_A 522 IGSMYGV 528 (571)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9998864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=1.5 Score=45.40 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=46.3
Q ss_pred CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEcCeEEEEecc-cceeeeecccc-cc-CCCC--CCCcEEE
Q 016020 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFR-GELVTSFEDHL-LW-HPDC--NTNNIYI 366 (396)
Q Consensus 293 ~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~gti~iWd~~-geL~t~fedh~-l~-~~~c--~~n~~~i 366 (396)
+.|..||+.|+|+.-.-+.. .++..-.+.. ++-+|+.-.+|.+.+||.. |+++-+|.-.- .+ .|-. .+++.|+
T Consensus 457 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 67999999999987644333 2233333444 4455666556999999986 68777775221 11 1222 5677776
Q ss_pred c
Q 016020 367 T 367 (396)
Q Consensus 367 t 367 (396)
.
T Consensus 536 ~ 536 (677)
T 1kb0_A 536 S 536 (677)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.33 Score=48.54 Aligned_cols=139 Identities=10% Similarity=-0.031 Sum_probs=94.5
Q ss_pred CcEEEeecCC----CeEEEEeccCceEEEEecc-CceEEEEEcCC-eEEEEEecC-------CCeeeeEEEEeecCcEEE
Q 016020 198 GKVLTYSAQD----SIYKVFDLKNYTMLYSISD-KHVQEIKISPG-IMLLIFNRS-------SSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 198 gkIlt~~a~d----~~YrVwdlknYs~lysIs~-~~VqEIkiSpg-~~Ll~~q~~-------~~~iplkIl~IetG~~l~ 264 (396)
.++...+..+ +.+-|.|+.+.+.+-+|.- ..= .|.+||+ -.|++.... ...-.+.++|..+++.++
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 4555655544 7999999999999999985 444 8999964 455555531 123478999999999999
Q ss_pred EEEee-cc------cCCccchhhhhcceeeEeec--CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-C
Q 016020 265 VFYHL-LH------RNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-R 334 (396)
Q Consensus 265 s~~~~-L~------~sk~i~FiE~~~ekLLIKQe--d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-g 334 (396)
.+... .. .-..+.|.+ .+.+|++-.+ +..+.++|+.+++++..-+... ...++-..+..|++++. |
T Consensus 164 ~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 164 DIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---CYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp EEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---EEEEEEEETTEEEEEETTS
T ss_pred EEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---ceeeccCCCcEEEEEcCCC
Confidence 87732 01 112367776 8999999875 5789999999999887433321 12333334466666665 6
Q ss_pred eEEEEec
Q 016020 335 TVAVWNF 341 (396)
Q Consensus 335 ti~iWd~ 341 (396)
++.+.+.
T Consensus 240 ~~~~V~~ 246 (426)
T 3c75_H 240 SLARVDF 246 (426)
T ss_dssp SEEEEEC
T ss_pred CEEEEEC
Confidence 6665555
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=1.4 Score=45.68 Aligned_cols=81 Identities=7% Similarity=0.026 Sum_probs=57.6
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCe
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~q 326 (396)
.-|.-||+.||+.+-+.....+...- -+-.-+..+++...|..|++||..|+|++- ++.....+|.. +..+++
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~--y~~~G~ 528 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT--YTHKGT 528 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCc--ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE--EEeCCE
Confidence 45888899999998877642211110 012257888999999999999999999875 44445556644 467899
Q ss_pred EEEEEEcC
Q 016020 327 LFLTFRNR 334 (396)
Q Consensus 327 LFLTfs~g 334 (396)
.|+.+.+|
T Consensus 529 qyv~~~~G 536 (599)
T 1w6s_A 529 QYVAIYYG 536 (599)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 99998886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0075 Score=57.17 Aligned_cols=189 Identities=13% Similarity=0.142 Sum_probs=92.0
Q ss_pred ccchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 016020 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (396)
Q Consensus 97 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 176 (396)
..+.|++-+..|.-.|+|..||+.+=.+.. +++..+-+... +.++++. +.+ ..|.|-- ..-|+.--.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~--g~~~v~~---s~d-g~l~a~d-----~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE--EPAFLPD---PND-GSLYTLG-----SKNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEEC---TTT-CCEEEC----------CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC--CCEEEEe---CCC-CEEEEEE-----CCCCceeee
Confidence 567788888889999999999999887766 45554444432 3344421 222 2333321 112221000
Q ss_pred Ccceeec--ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEE
Q 016020 177 FALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKI 254 (396)
Q Consensus 177 ~~LF~~~--~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkI 254 (396)
. -+... .-..|-.. + +|++++ ...++.+..||.++.+.+.++.... .+..+|.--.++.... ...+..
T Consensus 75 ~-~~~~~~~~~~sp~~~--~--~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~--dg~v~a 144 (369)
T 2hz6_A 75 L-PFTIPELVQASPCRS--S--DGILYM-GKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRT--EYTITM 144 (369)
T ss_dssp C-SCCHHHHHTTCSCC---------CCC-CEEEEEEEEECCC------------------------EEEEEE--EEEEEC
T ss_pred e-eccCccccccCceEe--c--CCEEEE-EeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEec--CCEEEE
Confidence 0 01111 11234321 1 344443 4567889999999999988887643 2345542222222222 457899
Q ss_pred EEeecCcEEEEEEeecccCCccchhh--hhcceeeEeecCCeeeEEEcccceEEEecc
Q 016020 255 LSIEDGTVLKVFYHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~sk~i~FiE--~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
||..||+.+-.+..- ....+.+.. ..+..+++...++.|.+||..+++++-..+
T Consensus 145 ~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 145 YDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EECCCCCEEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 999999988776521 111222211 122678999999999999999999876433
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=1.3 Score=40.80 Aligned_cols=182 Identities=9% Similarity=0.093 Sum_probs=108.2
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccC----ceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn----Ys~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~ 256 (396)
.+..|-=+.||..++++.-.+...+.+.++|+.+ -.....+.. .....|.+.+ +-.|.+.....+. +.+++
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~--I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE--EEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCE--EEEEe
Confidence 4678999999998999999999999999999986 222222332 4667788863 4444455444333 34556
Q ss_pred eecCcEEEEEEe-ecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEE
Q 016020 257 IEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR 332 (396)
Q Consensus 257 IetG~~l~s~~~-~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs 332 (396)
.. |+....+.. .+.+-..+.+-+ .+.+|++-..+ ..|..+|+.-.....+..+....|....+.+ ++.||++=+
T Consensus 106 ~~-g~~~~~~~~~~~~~P~~iavdp-~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 106 TK-GVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp TT-SSSEEEEEECTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CC-CCceEEEEECCCCCcceEEeCC-CCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 54 444333321 112212233222 46677776654 4677788754444334445678899999986 577888876
Q ss_pred c-CeEEEEecccc-eeeeecc-ccccCCC---CCCCcEEEccC
Q 016020 333 N-RTVAVWNFRGE-LVTSFED-HLLWHPD---CNTNNIYITSD 369 (396)
Q Consensus 333 ~-gti~iWd~~ge-L~t~fed-h~l~~~~---c~~n~~~it~~ 369 (396)
. +.|...|++|. +.+-.+. ..+.+|+ -..+.+|+|.-
T Consensus 184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~ 226 (316)
T 1ijq_A 184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 226 (316)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred CCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEEC
Confidence 6 79999999994 3222221 1233333 23466777653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=95.33 E-value=0.15 Score=50.57 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=96.0
Q ss_pred CCCeEEeeCCCCcEE-Eeec---------CCCeEEEEeccCceEEEEecc---------CceEEEEEcC-CeEEEEEecC
Q 016020 187 WPGFVEFDDVNGKVL-TYSA---------QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISP-GIMLLIFNRS 246 (396)
Q Consensus 187 ~PgfVEFDd~NgkIl-t~~a---------~d~~YrVwdlknYs~lysIs~---------~~VqEIkiSp-g~~Ll~~q~~ 246 (396)
.|+ +-+++ .|+.+ ..+. .++.+.|||.++.+.+-+|.- ..-..+.+|| |-.|++.+..
T Consensus 80 ~P~-va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~ 157 (386)
T 3sjl_D 80 LPN-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 157 (386)
T ss_dssp SCE-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred CCc-EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC
Confidence 377 89998 55543 4442 367899999999999988852 3566799994 6677777642
Q ss_pred CCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEE----
Q 016020 247 SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIF---- 321 (396)
Q Consensus 247 ~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiF---- 321 (396)
. .-.+.++|+++++.+..+.. + ....-| +.-...++.-..|+.+...|+.+ +++.......++.-...+|
T Consensus 158 ~-~~~VsVID~~t~~vv~tI~v--~-g~~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 158 P-APAVGVVDLEGKAFKRMLDV--P-DCYHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp S-SCEEEEEETTTTEEEEEEEC--C-SEEEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred C-CCeEEEEECCCCcEEEEEEC--C-Ccceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 1 23577899999999998862 1 111111 21233444556778888889887 6664322223332223343
Q ss_pred -e-ecCeEEEEEEcCeEEEEecccc
Q 016020 322 -L-YENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 322 -l-y~~qLFLTfs~gti~iWd~~ge 344 (396)
. .++.+++.-.+|++.+.|+.++
T Consensus 233 ~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 233 YSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp EETTTTEEEEEBTTSEEEEEECTTS
T ss_pred eEcCCCcEEEEeCCCEEEEEECCCC
Confidence 2 4676544333699999999885
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=2.8 Score=42.84 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=110.1
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc-ceeecccCCCCeEEeeCCCCcEEEeecCCCe
Q 016020 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-LFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (396)
Q Consensus 131 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~-LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~ 209 (396)
.+.++-...+...|.+++-....+-..|.- -++.-|+. .+ .++......| .|. .|+-++|...+..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v-----~dl~tg~~---~~~~~~~~k~~~~---~Ws--Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHL-----MDVESKQP---LETPLKDVKFSGI---SWL--GNEGFFYSSYDKP 196 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEE-----EETTTCSE---EEEEEEEEESCCC---EEE--TTTEEEEEESSCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEE-----EECCCCCC---CccccCCceeccE---EEe--CCCEEEEEEecCc
Confidence 566666777666666544333332222222 23333332 11 1222222333 455 3677888877743
Q ss_pred -------------EEEEeccCce----EEEEecc---CceEEEEEcCCe-EEEEEecCC-CeeeeEEEEeecCc-EEEEE
Q 016020 210 -------------YKVFDLKNYT----MLYSISD---KHVQEIKISPGI-MLLIFNRSS-SHVPLKILSIEDGT-VLKVF 266 (396)
Q Consensus 210 -------------YrVwdlknYs----~lysIs~---~~VqEIkiSpg~-~Ll~~q~~~-~~iplkIl~IetG~-~l~s~ 266 (396)
+++|++.+-. ++|+-.+ ..+..+.+||+- .|++..... ..--+.++++.+|+ ....+
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 7778886643 7888765 236789999654 444443332 22467788998875 34433
Q ss_pred EeecccCCccchhhhhcceeeEeec----CCeeeEEEcccceE---EEecccccCCCceEEEeecCe-EEEEEEcC---e
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYENQ-LFLTFRNR---T 335 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIKQe----d~~L~I~Dv~~~ki---~~v~~t~~~~PsAFiFly~~q-LFLTfs~g---t 335 (396)
. -+...........+++|++... +..|-.+|+.+++. ..+.+... ... -|.++++ |+++...+ .
T Consensus 277 ~--~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 277 Q--GDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp E--CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEE
T ss_pred e--CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeE
Confidence 3 1222222334457888887763 35788899988654 44333322 222 5666554 55555553 7
Q ss_pred EEEEecccceee
Q 016020 336 VAVWNFRGELVT 347 (396)
Q Consensus 336 i~iWd~~geL~t 347 (396)
|.+||++|....
T Consensus 352 l~~~d~~g~~~~ 363 (693)
T 3iuj_A 352 VEQFDYEGKRVR 363 (693)
T ss_dssp EEEECTTSCEEE
T ss_pred EEEEECCCCeeE
Confidence 899999985333
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=95.10 E-value=2.7 Score=40.91 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=57.0
Q ss_pred cchhhhhcceeeEeec---------CCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEE--cCeEEEEeccc
Q 016020 276 VDFIEQFNEKLLVKQE---------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR--NRTVAVWNFRG 343 (396)
Q Consensus 276 i~FiE~~~ekLLIKQe---------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs--~gti~iWd~~g 343 (396)
+.|.+ .+..|++--. ++...++|+.+++.+...+... .|..+.|.++++ ||++-. +++|.++|+..
T Consensus 269 v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 34444 6788888533 2567799999999888555443 699999999986 899998 59999999988
Q ss_pred -ceeeeec
Q 016020 344 -ELVTSFE 350 (396)
Q Consensus 344 -eL~t~fe 350 (396)
+.+.++.
T Consensus 347 ~kvv~~I~ 354 (368)
T 1mda_H 347 DQDQSSVE 354 (368)
T ss_dssp CEEEEECC
T ss_pred CcEEEEEE
Confidence 6777776
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.53 Score=44.37 Aligned_cols=147 Identities=11% Similarity=0.072 Sum_probs=93.9
Q ss_pred ceEEEEeccC---ceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee-cCC
Q 016020 218 YTMLYSISDK---HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE 293 (396)
Q Consensus 218 Ys~lysIs~~---~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~ 293 (396)
|+-+=+|... ..|-+.++|+-.|.+..+....-.+..+|.+||+.+.++. |+.....+=+-..+..|++-. .++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEecCC
Confidence 4444445442 2588999983366666554344579999999999999876 233222111222467787776 567
Q ss_pred eeeEEEcccceEEEecccccCCCceEEEeec-CeEEEEEEcCeEEEEeccc-ceeeeec--c--c---cccCCCCCCCcE
Q 016020 294 NLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFRNRTVAVWNFRG-ELVTSFE--D--H---LLWHPDCNTNNI 364 (396)
Q Consensus 294 ~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~-~qLFLTfs~gti~iWd~~g-eL~t~fe--d--h---~l~~~~c~~n~~ 364 (396)
.+-++|..+.+.+..-+.. .|...-..++ +.||++=-++++.+.|.+. +.+.+++ + + .++...+.++.+
T Consensus 87 ~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~l 164 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEV 164 (266)
T ss_dssp EEEEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEE
Confidence 8999999999888754333 3555555555 5577665448999999988 5444443 1 1 244444667788
Q ss_pred EEcc
Q 016020 365 YITS 368 (396)
Q Consensus 365 ~it~ 368 (396)
|++.
T Consensus 165 yvn~ 168 (266)
T 2iwa_A 165 WANI 168 (266)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8876
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.74 E-value=2.7 Score=39.22 Aligned_cols=188 Identities=14% Similarity=0.186 Sum_probs=112.9
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEc-CCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
-+.=+-+|+.+++..|-.-.++.+-..|+. .+.+-++.- .+.-.|.+. +|.+++..... +. +-++.+.+...
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~-~~--l~~~~v~~~~~ 103 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERD-YA--IYVISLTPNSE 103 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTT-TE--EEEEEECTTCC
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCC-Cc--EEEEEcCCCCe
Confidence 345566665555555544445555556665 555555532 466666665 45544443444 22 44777765443
Q ss_pred ---EEEEEeec---ccCCc---cchhhhhcceeeEeecCCeeeEEEcc---cc-eEEEe------cccccCCCceEEEee
Q 016020 263 ---LKVFYHLL---HRNKK---VDFIEQFNEKLLVKQENENLQILDVR---NA-ELMEV------SRTEFMTPSAFIFLY 323 (396)
Q Consensus 263 ---l~s~~~~L---~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~---~~-ki~~v------~~t~~~~PsAFiFly 323 (396)
+....+.+ +.++. +.+-+ .++.|++-+|..+..||.+. ++ .+... .......+++..|-+
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 22333222 22222 77777 46678888888788888775 11 12211 112344789999999
Q ss_pred cCeEEEEEEc--CeEEEEecccceee--eecc--ccc----cCCC----CCCCcEEEccCCcEEEEeccC
Q 016020 324 ENQLFLTFRN--RTVAVWNFRGELVT--SFED--HLL----WHPD----CNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 324 ~~qLFLTfs~--gti~iWd~~geL~t--~fed--h~l----~~~~----c~~n~~~it~~qd~ii~~~~~ 379 (396)
..+.++..|+ +.+-++|.+|+.+. ++.. |-| ..|+ =+++++||++..+++-.|=|.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence 8888888887 89999999998444 3332 222 2233 578999999999998877543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=94.61 E-value=1.1 Score=41.93 Aligned_cols=179 Identities=13% Similarity=0.155 Sum_probs=106.6
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE---EEEeccCceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecC
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~---lysIs~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG 260 (396)
+..|-=++||...|++--.+...+.+..+++.+... +..-.-.....+.+.+ +-.|.+.....+. +.+++.. |
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~--I~~~~~d-G 110 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR--IEVSNLD-G 110 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTE--EEEEETT-S
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCE--EEEEECC-C
Confidence 566778999998899999999999999999887631 2211113455677763 3333344443332 3455543 4
Q ss_pred cEEEEEE-eecccCCccchhhhhcceeeEeec--CCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-Ce
Q 016020 261 TVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RT 335 (396)
Q Consensus 261 ~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQe--d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gt 335 (396)
+....+. --+.+-..|.+-+ .+.+|++-.. +..|..+|+.-.....+..+....|....+.+ ++.||++=+. +.
T Consensus 111 ~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~ 189 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 189 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence 3333221 1111111233322 4567887763 56788888765444444456678999999997 7888988766 89
Q ss_pred EEEEecccc-eeeeeccccccCCC---CCCCcEEEcc
Q 016020 336 VAVWNFRGE-LVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 336 i~iWd~~ge-L~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
|..+|++|. +.+-.++ .+.+|+ --.+.+|+|.
T Consensus 190 I~~~d~dG~~~~~~~~~-~~~~P~glav~~~~lywtd 225 (318)
T 3sov_A 190 IHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTD 225 (318)
T ss_dssp EEEEETTSCSCEEEECS-CCSCEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCceEEEecC-CCCCceEEEEeCCEEEEEe
Confidence 999999984 3322222 233343 2344566653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.15 Score=53.34 Aligned_cols=183 Identities=9% Similarity=0.090 Sum_probs=107.5
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccC----ceEEEEecc--CceEEEEEc-CCeEEEEEecCCCeeeeEEEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn----Ys~lysIs~--~~VqEIkiS-pg~~Ll~~q~~~~~iplkIl~ 256 (396)
.+..|--+.||...+++...+...+.++++++.+ ......+.. ....-|.+. .+-.|.+.....+. |.+++
T Consensus 404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~--I~v~d 481 (699)
T 1n7d_A 404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVAD 481 (699)
T ss_dssp CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC--EEEEB
T ss_pred cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe--EEEEe
Confidence 3678999999998999999888888999999876 222222221 234456665 23333344333232 35566
Q ss_pred eecCcEEEEEE-eecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEeec-CeEEEEEE
Q 016020 257 IEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR 332 (396)
Q Consensus 257 IetG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~-~qLFLTfs 332 (396)
.. |+....+. .-+..-..|.+-+ .+.+|++-..+ ..|..+|+.......+..+....|.+..+.++ +.||++=+
T Consensus 482 ~d-g~~~~~l~~~~~~~P~giavDp-~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 482 TK-GVKRKTLFREQGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp SS-SCCEEEECCCSSCCCCCEECCS-SSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred cC-CCceEEEEeCCCCCcceEEEcc-CCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 54 43333322 1122222244322 46677776644 56777777654444444556788999999874 77888876
Q ss_pred c-CeEEEEecccc-eeeeecc-ccccCCC---CCCCcEEEccCC
Q 016020 333 N-RTVAVWNFRGE-LVTSFED-HLLWHPD---CNTNNIYITSDQ 370 (396)
Q Consensus 333 ~-gti~iWd~~ge-L~t~fed-h~l~~~~---c~~n~~~it~~q 370 (396)
. +.|..+|++|. +.+-+.. ..+.+|. --.+.+|+|.-+
T Consensus 560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~ 603 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 603 (699)
T ss_dssp TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST
T ss_pred CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC
Confidence 6 79999999994 3333322 2223333 234567777643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.42 E-value=2.8 Score=45.03 Aligned_cols=193 Identities=9% Similarity=0.088 Sum_probs=117.5
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCc----eEEEEec--cCceEEEEEcC-CeEEEEEecCCCeeeeEEEE
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknY----s~lysIs--~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~ 256 (396)
.+++|-=+.||..+++|.-.+...+.++.+++.+. .....+. -....-|++.+ +-.|.+.....+ -|.+++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~--~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG--TVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT--EEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCC--eEEEEe
Confidence 47788889999999999999999999999998763 2222233 15566777763 324445554433 334555
Q ss_pred eecCcEEEEEE-eecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEE
Q 016020 257 IEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR 332 (396)
Q Consensus 257 IetG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs 332 (396)
+. |+....+. ..|..-..|.+-+ .+.+|++---+ ..|...++.......+..+...+|.+..+-+ ++.||++=.
T Consensus 500 ld-G~~~~~l~~~~l~~P~gIaVDp-~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 500 TK-GVKRKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp TT-SSSEEEEEECTTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CC-CCeEEEEEeCCCCCcceEEEec-CCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC
Confidence 53 44443332 1111112233322 45688887644 5788888877666666667778999999884 678888865
Q ss_pred c-CeEEEEecccc-eeeeeccc-cccCCC---CCCCcEEEccCC-cEEEEeccCC
Q 016020 333 N-RTVAVWNFRGE-LVTSFEDH-LLWHPD---CNTNNIYITSDQ-DLIISYCKAE 380 (396)
Q Consensus 333 ~-gti~iWd~~ge-L~t~fedh-~l~~~~---c~~n~~~it~~q-d~ii~~~~~~ 380 (396)
. +.|...|++|. +.+-...+ .+.+|. -..+.+|+|... .-|...-|..
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence 5 79999999994 44443332 222333 345677777533 4444444433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.30 E-value=1.7 Score=41.52 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=106.4
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..+..|.=+-+|..+|++...+...+.+.++++.+-....-+.+ ..-..|++.| |.|....... .--+..++.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~--~~~I~r~~~- 232 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRIEASSM- 232 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS--SCEEEEEET-
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC--CCEEEEEeC-
Confidence 34678999999998999999999999999999976554333443 5678899984 4554443332 112233332
Q ss_pred cCcEEEEEE-eecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-Ce
Q 016020 259 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RT 335 (396)
Q Consensus 259 tG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gt 335 (396)
+|+....+. --+..-.-|.|-+ .+..|++-. ....|..+|+..+....+.......|.+..+ .++.||+|=.. +.
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~ 310 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS 310 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEG-GGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE
T ss_pred CCCCcEEEEECCCCCeeeEEEeC-CCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe
Confidence 454443332 1122223355544 466676654 5677889998765555555555678888877 88999999876 79
Q ss_pred EEEEe-cccceeeeec
Q 016020 336 VAVWN-FRGELVTSFE 350 (396)
Q Consensus 336 i~iWd-~~geL~t~fe 350 (396)
|..+| ..|+.++.+.
T Consensus 311 V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 311 INSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEETTTCCSCEEEE
T ss_pred EEEEECCCCcceEEEc
Confidence 99999 7886555444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.11 E-value=2.1 Score=40.16 Aligned_cols=137 Identities=11% Similarity=0.049 Sum_probs=87.8
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceE
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL 305 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki 305 (396)
...|-+.+++| .|....+....=.+..+|++||+.+.+... +..-.-+=+-..++.|++-- .++.+.+||..+.++
T Consensus 21 ~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence 55788889987 455666664445789999999999998863 32211011122355655543 578899999999988
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeecc----c---cccCCCCCCCcEEEcc
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFED----H---LLWHPDCNTNNIYITS 368 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fed----h---~l~~~~c~~n~~~it~ 368 (396)
+..-+.. ..+.+.. ..++.||+|=-+++|.++|.+. +++.+++= . .+=...|.++.+|+.-
T Consensus 98 ~~ti~~~-~~Gwglt-~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 98 RARFRYP-GEGWALT-SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp EEEEECS-SCCCEEE-ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEEEeCC-CCceEEe-eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 8754433 2455554 3356678876668899999876 54444332 1 1222336788888765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=5.2 Score=40.60 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEEEecc-cceeeeec
Q 016020 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE 350 (396)
Q Consensus 292 d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~-geL~t~fe 350 (396)
++.|.+||+.+++++-..+........-+-..++.+|+.-.+|.+..||.+ |+++-+++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 478999999999886543333222223333446777887667999999975 57776665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.72 Score=47.91 Aligned_cols=74 Identities=12% Similarity=-0.004 Sum_probs=48.7
Q ss_pred CeeeEEEcccceEEEecccccCCCceEEEeecC-eEEEEEEcCeEEEEecc-cceeeeecccccc--CCC--CCCCcEEE
Q 016020 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN-QLFLTFRNRTVAVWNFR-GELVTSFEDHLLW--HPD--CNTNNIYI 366 (396)
Q Consensus 293 ~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~-qLFLTfs~gti~iWd~~-geL~t~fedh~l~--~~~--c~~n~~~i 366 (396)
+.|..||+.|+|+.-..+.+...... .+...+ -+|..-.+|++..||.+ |+++-+++-...- .|- -.+++.||
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGG-TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCc-cceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 67999999999988765555444444 444444 45665556999999977 6877666533221 222 35788887
Q ss_pred c
Q 016020 367 T 367 (396)
Q Consensus 367 t 367 (396)
+
T Consensus 534 ~ 534 (689)
T 1yiq_A 534 T 534 (689)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.96 E-value=2.4 Score=41.57 Aligned_cols=157 Identities=8% Similarity=0.074 Sum_probs=97.8
Q ss_pred ccCCCCeEEeeC--CCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEee-c
Q 016020 184 SLKWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-D 259 (396)
Q Consensus 184 ~l~~PgfVEFDd--~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie-t 259 (396)
.|.+|..+-+|+ -.|.+...+.. +.++++|+++.+...-+.. .....|.+++.=-|++........+-.++.+. +
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 789999999997 36888887776 8899999988775554544 56889999965446666543222222222221 2
Q ss_pred CcEE--EEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceE-EEec-ccccCCCceEEEeecCe-EEEEEEc
Q 016020 260 GTVL--KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL-MEVS-RTEFMTPSAFIFLYENQ-LFLTFRN 333 (396)
Q Consensus 260 G~~l--~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki-~~v~-~t~~~~PsAFiFly~~q-LFLTfs~ 333 (396)
|... ..+. .+.+-..+.+-+ .+..|++-. .++.|..+|..++++ ..+. ......|....|.++++ ||++-+.
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~-~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHP-QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECT-TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCeecccccc-ccCCCCEEEEeC-CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 2211 1111 122223355444 245677655 567899999988877 2222 12223344577788887 8988876
Q ss_pred -CeEEEEeccc
Q 016020 334 -RTVAVWNFRG 343 (396)
Q Consensus 334 -gti~iWd~~g 343 (396)
+.|..++.++
T Consensus 294 ~~~I~~~~~d~ 304 (433)
T 4hw6_A 294 KHCIYRVDYNR 304 (433)
T ss_dssp TTEEEEEEBCT
T ss_pred CCEEEEEeCCC
Confidence 7999988774
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=1.4 Score=45.14 Aligned_cols=144 Identities=10% Similarity=0.138 Sum_probs=94.5
Q ss_pred CCCCeEEeeCCCCc---EEEeecCCCeEEEEeccCceEEEEeccCc--------------------------------eE
Q 016020 186 KWPGFVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDKH--------------------------------VQ 230 (396)
Q Consensus 186 ~~PgfVEFDd~Ngk---Ilt~~a~d~~YrVwdlknYs~lysIs~~~--------------------------------Vq 230 (396)
..|-+++.+..+|+ ++.....++.+.++|.++.+.+.+..-.. .+
T Consensus 321 ~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 400 (582)
T 1flg_A 321 NELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGK 400 (582)
T ss_dssp CCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCC
T ss_pred CCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCC
Confidence 45777777656784 66666789999999999999998775422 22
Q ss_pred EEEEcCCeE---------------EEEEecC-------------------------------CCeeeeEEEEeecCcEEE
Q 016020 231 EIKISPGIM---------------LLIFNRS-------------------------------SSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 231 EIkiSpg~~---------------Ll~~q~~-------------------------------~~~iplkIl~IetG~~l~ 264 (396)
..-++|+.+ ++..... ...-.|.-||+.||+.+-
T Consensus 401 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W 480 (582)
T 1flg_A 401 AVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVW 480 (582)
T ss_dssp CEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEE
T ss_pred ceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEE
Confidence 233444321 1111100 013457788999999988
Q ss_pred EEEeecccCC-ccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCeEEEEEEcC
Q 016020 265 VFYHLLHRNK-KVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQLFLTFRNR 334 (396)
Q Consensus 265 s~~~~L~~sk-~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~qLFLTfs~g 334 (396)
+.....+... .+- .-+..+++...|..|++||..|+|++- ++.....+|- +|..++++|+++.+|
T Consensus 481 ~~~~~~~~~~g~~~---tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~--~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 481 EHKEHLPLWAGVLA---TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPI--TWEQDGEQYLGVTVG 549 (582)
T ss_dssp EEEESSCCCSCCEE---ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEEC
T ss_pred EecCCCCCcccceE---eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCce--EEEECCEEEEEEEcc
Confidence 7764322111 111 247889999999999999999999875 4444444454 446899999998886
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=4.3 Score=37.31 Aligned_cols=173 Identities=9% Similarity=0.053 Sum_probs=98.1
Q ss_pred cCCCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeec---CcEEEEEE-eecccCCccch
Q 016020 205 AQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKVFY-HLLHRNKKVDF 278 (396)
Q Consensus 205 a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Iet---G~~l~s~~-~~L~~sk~i~F 278 (396)
++...+++.|+.+.+....+.. .+...+.+.+ +-.|.+...... -+..+++.+ |+....+. .-+..-.-+.+
T Consensus 7 ~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~--~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 7 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp ECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTT--EEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred ECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCC--cEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence 3445678888888665555554 7788888875 334444444422 344455554 22222211 01111112333
Q ss_pred hhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc--CeEEEEecccceeeeeccccc
Q 016020 279 IEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN--RTVAVWNFRGELVTSFEDHLL 354 (396)
Q Consensus 279 iE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~--gti~iWd~~geL~t~fedh~l 354 (396)
-. .+..|++- ..++.|.++|+..+....+..+....|.+...-+ ++.||+|=.. +.|...+.+|...+.+-...+
T Consensus 85 d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~ 163 (316)
T 1ijq_A 85 DW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 163 (316)
T ss_dssp ET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred ee-cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCC
Confidence 22 35667665 5678899999876655555455677898888876 7788888654 689999999964443322223
Q ss_pred cCCC-----CCCCcEEEccCCcEEEEeccCC
Q 016020 355 WHPD-----CNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 355 ~~~~-----c~~n~~~it~~qd~ii~~~~~~ 380 (396)
..|+ ..++++|++....=-|..+..+
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 3344 3457888876543334444443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.60 E-value=7.6 Score=40.06 Aligned_cols=81 Identities=7% Similarity=0.008 Sum_probs=58.4
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCe
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~q 326 (396)
-.|.-||..||+.+-+....-+... -- +-.-+..+++...+..|.+||..+++++- +.......|-.+ ..+++
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~-~~-~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~--~~~G~ 513 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNG-GT-LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF--ELAGR 513 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCC-CE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcC-ce-eEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE--EECCE
Confidence 4588899999999887764222111 11 12257889999999999999999999875 443444455544 68999
Q ss_pred EEEEEEcC
Q 016020 327 LFLTFRNR 334 (396)
Q Consensus 327 LFLTfs~g 334 (396)
+|++..+|
T Consensus 514 ~yva~~~G 521 (668)
T 1kv9_A 514 QYVAIMAG 521 (668)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999886
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.36 E-value=2.9 Score=39.33 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=104.9
Q ss_pred ccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEeec
Q 016020 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 184 ~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~Iet 259 (396)
.+..|.-+-+|..+|++...+...+.+.++++.+-....-+.. ..-..|++.| |.|....... .--+..++. +
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I~r~~~-d 190 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRIEASSM-D 190 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEEEEEET-T
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEEEEEeC-C
Confidence 4678999999999999999999999999999987554444433 5678899985 4554443332 112223332 4
Q ss_pred CcEEEEEE-eecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 260 GTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 260 G~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
|+....+. -.+..-.-|.|-+ .+..|++-. ....|..+|+..+....+.......|.+..+ .++.||+|=.. +.|
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred CCCcEEEEECCCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeE
Confidence 54433221 0112222244443 466777665 5667888998765555555555678888777 89999999776 789
Q ss_pred EEEe-cccceeeeec
Q 016020 337 AVWN-FRGELVTSFE 350 (396)
Q Consensus 337 ~iWd-~~geL~t~fe 350 (396)
...| ..|+.++.+.
T Consensus 269 ~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 269 NSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEEccCCCccEEec
Confidence 9998 7786444443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.13 E-value=4.7 Score=36.30 Aligned_cols=174 Identities=11% Similarity=0.093 Sum_probs=102.8
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEec-cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs-~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
.+|.-+-+|+ +|++...+...+.+.+||..+- ....+. ......|.++++=.|++.....+..-+-.++..+|+...
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 6888899998 8899888888888889998763 332222 367889999864345555433222344556777888654
Q ss_pred EEEeecccCCc---cchhhhhcceeeEee-cCCeeeEEEcccc--eEEEe--------cccccCCCceEEEeecC-eEEE
Q 016020 265 VFYHLLHRNKK---VDFIEQFNEKLLVKQ-ENENLQILDVRNA--ELMEV--------SRTEFMTPSAFIFLYEN-QLFL 329 (396)
Q Consensus 265 s~~~~L~~sk~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~--ki~~v--------~~t~~~~PsAFiFly~~-qLFL 329 (396)
-... +.... +.+. .+..+++-. .+..|..+|..++ ++... ....+..|... .+++ .||+
T Consensus 110 ~~~~--~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 110 LLTL--PDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEC--TTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEeC--CCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 3331 11111 1111 233455544 4778889998765 33321 12334456665 6665 6888
Q ss_pred EEEc-CeEEEEeccc--ce--eeeeccccccCCC----CCCCcEEEccC
Q 016020 330 TFRN-RTVAVWNFRG--EL--VTSFEDHLLWHPD----CNTNNIYITSD 369 (396)
Q Consensus 330 Tfs~-gti~iWd~~g--eL--~t~fedh~l~~~~----c~~n~~~it~~ 369 (396)
+-+. +.|..+|.++ .+ ...+-+ +..|+ -+++++|++..
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECB
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeC
Confidence 8776 7999999984 32 111211 11233 34677888863
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=92.48 E-value=4.6 Score=38.87 Aligned_cols=162 Identities=13% Similarity=0.162 Sum_probs=105.9
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..+..|.=+-+|..+|++...+...+.+.+.++.+-...--+.+ .....|++.| |.|.......+. -+..++.
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~--~I~~~~~- 232 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA--KIKKGGL- 232 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSC--CEEEEET-
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCC--EEEEEeC-
Confidence 35678999999999999999999999999999987654444443 5688999976 555544433322 2333343
Q ss_pred cCcEEEEEE-eecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecc--cccCCCceEEEeecCeEEEEEEc-
Q 016020 259 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 259 tG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~--t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
+|+....+. --|..-+-|.+-. .+..|++- .....|..+|+..+....+.. .....|.+.-. .++.||+|=..
T Consensus 233 dG~~~~~~~~~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~ 310 (400)
T 3p5b_L 233 NGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIIN 310 (400)
T ss_dssp TSCSCEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSS
T ss_pred CCCccEEEEECCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCC
Confidence 455444332 1112222344443 45677665 467789999987655554433 34567776654 88899999877
Q ss_pred CeEEEEe-cccceeeee
Q 016020 334 RTVAVWN-FRGELVTSF 349 (396)
Q Consensus 334 gti~iWd-~~geL~t~f 349 (396)
+.|..+| ..|+.++.+
T Consensus 311 ~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 311 EAIFSANRLTGSDVNLL 327 (400)
T ss_dssp CSEEEEESSSCCCCEEE
T ss_pred CeEEEEEcCCCCceEEE
Confidence 7899998 777544444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=6.3 Score=40.70 Aligned_cols=181 Identities=13% Similarity=0.172 Sum_probs=108.3
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE-EEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~-lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..++.|-=++||..+|++.-.+...+.+..|++.+-.. ...+.. .....+++.+ +-.|.+.....+. +.+.+.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~--I~v~~~- 113 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR--IEVSNL- 113 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE--EEEEET-
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCE--EEEEEC-
Confidence 34677888999999999999899889999999987642 333333 5778888885 4455555554333 344554
Q ss_pred cCcEEEEEE-eecccCCccchhhhhcceeeEeecC--CeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-
Q 016020 259 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN- 333 (396)
Q Consensus 259 tG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed--~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~- 333 (396)
+|+....+. -.|.+-..|.+-+ .+.+|++---+ ..|.-.++.-.....+..+...+|.+..+-+ ++.||++=..
T Consensus 114 dG~~~~~l~~~~l~~P~~Iavdp-~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 114 DGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp TSCSCEEEECSSCSCCCCEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEeCCCCCCceEEEec-CCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCC
Confidence 354433322 2223333344333 46688887644 4555566655444444455678999999987 6888988665
Q ss_pred CeEEEEecccc-eeeeeccccccCCC---CCCCcEEEcc
Q 016020 334 RTVAVWNFRGE-LVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 334 gti~iWd~~ge-L~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
+.|...|.+|. +.+-.++. +-+|. .-.+++|+|.
T Consensus 193 ~~I~~~~~dG~~~~~~~~~~-~~~P~gi~~~~~~ly~td 230 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTD 230 (619)
T ss_dssp CCEEEESSSCCEEC----------CCCEEESSSEEEEEC
T ss_pred CeEEEecCCCCccEEEEeCC-CCCceEEEEeCCEEEEec
Confidence 79999999994 33322221 23333 3444666664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.97 E-value=2.9 Score=43.42 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=58.6
Q ss_pred eeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEE---ecccccCCCceEEEeecCe
Q 016020 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME---VSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 250 iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~---v~~t~~~~PsAFiFly~~q 326 (396)
-.|..||+.||+.+-.+.+--+-.. --+. .-+..+++...|+.|++||..|+|++- ++.+....|.. |..+++
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~-g~~~-tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t--y~~~G~ 530 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNG-GTLS-TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVT--YSVDGE 530 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCC-CEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTE
T ss_pred eeEEEEECCCCCeEeEccCCCCccC-ccce-ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceE--EEECCE
Confidence 4588999999999888764211111 1222 256788899999999999999999874 44444456644 478999
Q ss_pred EEEEEEcC
Q 016020 327 LFLTFRNR 334 (396)
Q Consensus 327 LFLTfs~g 334 (396)
.|+++..|
T Consensus 531 qyv~~~~G 538 (689)
T 1yiq_A 531 QYVTFMAG 538 (689)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999876
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=7.5 Score=40.13 Aligned_cols=156 Identities=12% Similarity=0.187 Sum_probs=95.6
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCc
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
++.|-=++||..+|++.-++...+.++.+++.+-...--+.. ....-+++.. +-.|.......+.| .+.+.. |+
T Consensus 348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I--~v~~~~-G~ 424 (619)
T 3s94_A 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRI--EVTRLN-GT 424 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE--EEEETT-SC
T ss_pred cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcE--EEEeCC-CC
Confidence 567777999999999999998888888899876433222332 4566777763 33344444443333 344443 44
Q ss_pred EEEEEE-eecccCCccchhhhhcceeeEeecCC--eeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-CeE
Q 016020 262 VLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTV 336 (396)
Q Consensus 262 ~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed~--~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti 336 (396)
....+. .-|.+-..|.+-+ .+.+|++---++ .|.-.++--.....+..+...+|....+-+ ++.||++=+. +.|
T Consensus 425 ~~~~l~~~~l~~P~~iavdp-~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I 503 (619)
T 3s94_A 425 MRKILISEDLEEPRAIVLDP-MVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503 (619)
T ss_dssp SCEEEECTTCCSEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEECCCCCeeeEEEEc-CCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEE
Confidence 332222 1111112233333 356777765443 444445543334444456688999988886 7889998766 799
Q ss_pred EEEecccc
Q 016020 337 AVWNFRGE 344 (396)
Q Consensus 337 ~iWd~~ge 344 (396)
+..+++|.
T Consensus 504 ~~~~~dG~ 511 (619)
T 3s94_A 504 EVMNTDGT 511 (619)
T ss_dssp EEEESSSC
T ss_pred EEEecCCC
Confidence 99999994
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.55 E-value=4.5 Score=41.50 Aligned_cols=162 Identities=11% Similarity=0.127 Sum_probs=101.9
Q ss_pred eecccCCCCeEEeeCC-CCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEE-------cC-CeEEEEEecC
Q 016020 181 ESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKI-------SP-GIMLLIFNRS 246 (396)
Q Consensus 181 ~~~~l~~PgfVEFDd~-NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIki-------Sp-g~~Ll~~q~~ 246 (396)
....+..|.++.||+. .+.+...+.....+++.|+++.....-+.. +....|.+ ++ |-+|++....
T Consensus 134 ~~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 134 KCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SCBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred cccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 3566889999999974 577777666667888999998664443332 35788999 63 3345555544
Q ss_pred C-C---eeeeEEEEeec-CcEE-----EEEEeecccCCccchhhhhcceeeE-eecCCeeeEEEcc-------cceE---
Q 016020 247 S-S---HVPLKILSIED-GTVL-----KVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVR-------NAEL--- 305 (396)
Q Consensus 247 ~-~---~iplkIl~Iet-G~~l-----~s~~~~L~~sk~i~FiE~~~ekLLI-KQed~~L~I~Dv~-------~~ki--- 305 (396)
. + ...+.+++... |+.. ..+. .+.+-.-+..-+ .+..|++ -..+..|..+|+. ++++
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp-~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHP-INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECT-TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcC-CCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 3 2 23344554343 3321 1111 122333454444 3455554 6677789999998 5654
Q ss_pred --------E-E-ecccccCCCceEEEeecCe-EEEEEEc-CeEEEEecccc
Q 016020 306 --------M-E-VSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 306 --------~-~-v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~ge 344 (396)
. + .......+|....|.++++ ||++-+. ..|..+|.+|.
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 1 1 1223346789999999998 7888776 79999888874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=91.01 E-value=3.3 Score=39.35 Aligned_cols=137 Identities=11% Similarity=0.096 Sum_probs=86.0
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceE
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL 305 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki 305 (396)
...|-+.+++| .|....+....=.+..+|++||+.+.++. |+..-.-+=+-..++.|++-- .++.+.+||..+.++
T Consensus 43 ~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYRNG-YFYESTGLNGRSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEETT-EEEEEEEETTEEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEECC-EEEEECCCCCCceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 33577888877 66666666555589999999999999886 333211111223466666654 477899999999888
Q ss_pred EEecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeec----cccccC---CCCCCCcEEEcc
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFE----DHLLWH---PDCNTNNIYITS 368 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fe----dh~l~~---~~c~~n~~~it~ 368 (396)
+..-+... .+.++.+ .++.||++=-+++|.++|... +++.+++ ++-.-. ..|.++.+|+..
T Consensus 120 ~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~ 188 (262)
T 3nol_A 120 VRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV 188 (262)
T ss_dssp EEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE
Confidence 87444322 3344442 345677765457799999875 5444432 222222 236678888765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=10 Score=34.06 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=89.3
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceE-EEEecc--------------------CceEEEEEcC-CeEE
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISD--------------------KHVQEIKISP-GIML 240 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~-lysIs~--------------------~~VqEIkiSp-g~~L 240 (396)
..+.+|.=+-+|+ +|+++-.+..++.+..||..+.+. .|.... .....|.+.+ +=.|
T Consensus 16 g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 16 APSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp CSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 4467888888887 577444455566677778776432 232211 3577888885 3344
Q ss_pred EEEecCCCeeeeEEEEeecCcEEEEEEee-----cccCCccchhhhhcceeeEeec------------------CCeeeE
Q 016020 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHL-----LHRNKKVDFIEQFNEKLLVKQE------------------NENLQI 297 (396)
Q Consensus 241 l~~q~~~~~iplkIl~IetG~~l~s~~~~-----L~~sk~i~FiE~~~ekLLIKQe------------------d~~L~I 297 (396)
++....+. +..++..+|+.. .+... +..-..+.+-+. ...|++.-. ++.|..
T Consensus 95 ~v~d~~~~---i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 95 YIVDCYYH---LSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEETTTE---EEEECTTCEECE-EEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred EEEECCCC---EEEEeCCCCEEE-EecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEE
Confidence 44433332 556666655422 22100 011111222210 235665432 256888
Q ss_pred EEcccceEEEecccccCCCceEEEeecCe-EEEEEEc-CeEEEEecccc
Q 016020 298 LDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRGE 344 (396)
Q Consensus 298 ~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~ge 344 (396)
||..++++..+. .....|....+.++++ ||++=+. +.|..|+.+++
T Consensus 170 ~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 170 YDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp EETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred EeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 888777765443 3457788888888876 8888655 89999999863
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=89.96 E-value=2.3 Score=44.27 Aligned_cols=150 Identities=11% Similarity=0.017 Sum_probs=79.3
Q ss_pred CeEEee-CCCCcEEEeecCC-----CeEEEEeccCc-eEEE-EeccCceEEEEEcCCe-EEEEEecCCCeee--eEEEEe
Q 016020 189 GFVEFD-DVNGKVLTYSAQD-----SIYKVFDLKNY-TMLY-SISDKHVQEIKISPGI-MLLIFNRSSSHVP--LKILSI 257 (396)
Q Consensus 189 gfVEFD-d~NgkIlt~~a~d-----~~YrVwdlknY-s~ly-sIs~~~VqEIkiSpg~-~Ll~~q~~~~~ip--lkIl~I 257 (396)
+.+.|. + +|+.|||.... ..++|+|+.+. +.+- .+. .....+.|||+- -|+......+.-| +..+++
T Consensus 177 ~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 177 MEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred eeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 446788 5 79989887653 35999999998 6321 121 123568899763 3333333223344 445566
Q ss_pred ecCcEEEEEEeecccC---CccchhhhhcceeeEee---cCCeeeEEEcccc--eE--EEecccccCCCceEE-EeecCe
Q 016020 258 EDGTVLKVFYHLLHRN---KKVDFIEQFNEKLLVKQ---ENENLQILDVRNA--EL--MEVSRTEFMTPSAFI-FLYENQ 326 (396)
Q Consensus 258 etG~~l~s~~~~L~~s---k~i~FiE~~~ekLLIKQ---ed~~L~I~Dv~~~--ki--~~v~~t~~~~PsAFi-Fly~~q 326 (396)
.+|+....+.+--... -.+.+.+ .+.+|++-. ....|.++|+.++ +. ..+..... .|.-.+ |..++.
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~-~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK-GVRYDVQMHGTSH 332 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT-TCCEEEEEETTTE
T ss_pred CCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC-CceEEEeeeeCCE
Confidence 5554221111100111 1245666 889999877 4567888999875 44 44443332 222111 233455
Q ss_pred EEEEEEcC-----eEEEEecc
Q 016020 327 LFLTFRNR-----TVAVWNFR 342 (396)
Q Consensus 327 LFLTfs~g-----ti~iWd~~ 342 (396)
|+++-..+ .+-.+|+.
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETT
T ss_pred EEEEeCCCCCCCcEEEEEcCC
Confidence 54443222 45555665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=89.60 E-value=21 Score=36.83 Aligned_cols=186 Identities=13% Similarity=0.190 Sum_probs=105.6
Q ss_pred ccchhhhhhccccceeeeccccceEEEecCCCCc----------eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE----------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 97 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e----------vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
+.+.|++.+..|.-.|+|..||+.+=...+.... +-+++-+. ++.|++.+ .| ..|.|--
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~---~d--g~l~alD---- 133 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGT---LD--GRLIALD---- 133 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEEC---TT--SEEEEEE----
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEEEc---CC--CEEEEEE----
Confidence 5788888888999999999999999877665432 12333332 23444322 12 2233321
Q ss_pred hhhhCCCCCCCcceeecc---------cCCCCeEEeeCCCCcEEEeecC-----CCeEEEEeccCceEEEEeccC-----
Q 016020 167 YIRRGKPDSGFALFESES---------LKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDK----- 227 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~---------l~~PgfVEFDd~NgkIlt~~a~-----d~~YrVwdlknYs~lysIs~~----- 227 (396)
.. .|..+.+... ...| .| + +|++++-... ++.+..||.++.+.+.+....
T Consensus 134 -~~-----tG~~~W~~~~~~~~~~~~~~~~P-~v--~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~ 202 (668)
T 1kv9_A 134 -AK-----TGKAIWSQQTTDPAKPYSITGAP-RV--V--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPA 202 (668)
T ss_dssp -TT-----TCCEEEEEECSCTTSSCBCCSCC-EE--E--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred -CC-----CCCEeeeeccCCCCCcceecCCC-EE--E--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCC
Confidence 11 2223333221 1122 12 1 4677765543 689999999999998887521
Q ss_pred c------------------e----------EEEEEcCCeEEEEEecCCCee------------------eeEEEEeecCc
Q 016020 228 H------------------V----------QEIKISPGIMLLIFNRSSSHV------------------PLKILSIEDGT 261 (396)
Q Consensus 228 ~------------------V----------qEIkiSpg~~Ll~~q~~~~~i------------------plkIl~IetG~ 261 (396)
. + ..+.+.|..-++.. ...+-- .+.-+|..||+
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~ 281 (668)
T 1kv9_A 203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK 281 (668)
T ss_dssp SCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred ccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence 0 0 11344432112111 121211 38888999999
Q ss_pred EEEEEEeecccC-------Cccchh--hhhcc---eeeEeecCCeeeEEEcccceEE
Q 016020 262 VLKVFYHLLHRN-------KKVDFI--EQFNE---KLLVKQENENLQILDVRNAELM 306 (396)
Q Consensus 262 ~l~s~~~~L~~s-------k~i~Fi--E~~~e---kLLIKQed~~L~I~Dv~~~ki~ 306 (396)
.+-.+... ++. .++-.. +..++ .|++...++.|-++|-.|++++
T Consensus 282 ~~W~~~~~-~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 282 LAWHYQVT-PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEEESS-TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeeEeecC-CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 99877621 111 121111 11333 5888889999999999999988
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.85 E-value=20 Score=38.54 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=102.9
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..+..|.=+-+|..++++...+...+.+.|.++.+-....-+.. .....|.+.| |.|.......+. .+...++
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~--~I~~~~~- 544 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA--KIKKGGL- 544 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC--EEEEEET-
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCC--eEEEEec-
Confidence 35789999999999999999999999999999987654444433 5678999976 555544433322 2344444
Q ss_pred cCcEEEEEEe-ecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEeccc--ccCCCceEEEeecCeEEEEEEc-
Q 016020 259 DGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 259 tG~~l~s~~~-~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t--~~~~PsAFiFly~~qLFLTfs~- 333 (396)
+|+....+.. .|..-.-|.+-. .+..|++- .....|..+|+..+....+..+ ....|.++- +.++.||+|=+.
T Consensus 545 dG~~~~~lv~~~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~gla-v~~~~lYwtD~~~ 622 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VFEDKVFWTDIIN 622 (791)
T ss_dssp TSCCEEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE-EETTEEEEEETTT
T ss_pred CCCceEEEEeCCCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEE-EeCCEEEEEECCC
Confidence 4655544431 111111233222 35667665 4667899999876655555443 344565554 578899999876
Q ss_pred CeEEEEe-cccceeee
Q 016020 334 RTVAVWN-FRGELVTS 348 (396)
Q Consensus 334 gti~iWd-~~geL~t~ 348 (396)
+.|..-| +.|+.++.
T Consensus 623 ~~I~~~dk~tG~~~~~ 638 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNL 638 (791)
T ss_dssp TEEEEEETTTCCCCEE
T ss_pred CEEEEEeCCCCcceEE
Confidence 7888777 56643333
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=88.43 E-value=23 Score=36.62 Aligned_cols=156 Identities=10% Similarity=0.142 Sum_probs=93.9
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--------CceEEEEEcC-CeEEEEEecCCCeeeeEEE
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKISP-GIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--------~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl 255 (396)
++.|--++||..+|+|--++...+.++.+++.+-...-.+.. .....+++-. +-.|.......+. +.+.
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~--I~v~ 416 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV--INVT 416 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE--EEEE
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE--EEEE
Confidence 455667899999999999888888888888765332111221 3566777764 3344444444443 3344
Q ss_pred EeecCcEEEEEEe-ecccCCccchhhhhcceeeEeecCC---eeeEEEcccceEEEecccccCCCceEEEeec-CeEEEE
Q 016020 256 SIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLT 330 (396)
Q Consensus 256 ~IetG~~l~s~~~-~L~~sk~i~FiE~~~ekLLIKQed~---~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~-~qLFLT 330 (396)
+. +|+....+.. .|.+-..|.+-+ ...+|++---+. .|.-.++--.....+-.+...+|....+-++ +.||++
T Consensus 417 ~~-~G~~~~~l~~~~l~~Pr~iavdp-~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 417 RL-DGRSVGVVLKGEQDRPRAVVVNP-EKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA 494 (628)
T ss_dssp ET-TSCEEEEEEECTTCCEEEEEEET-TTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EC-CCCeEEEEEeCCCCceeeEEEec-CCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEE
Confidence 44 5775554331 121112244333 356777654333 3555555433343343455778999988885 788988
Q ss_pred EEc-CeEEEEecccc
Q 016020 331 FRN-RTVAVWNFRGE 344 (396)
Q Consensus 331 fs~-gti~iWd~~ge 344 (396)
=+. +.|+..|++|.
T Consensus 495 D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 495 DSDLRRIESSDLSGA 509 (628)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred eCCCCEEEEEeCCCC
Confidence 765 89999999994
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=88.21 E-value=14 Score=33.16 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCCeEEeeCCCCcEEEeecCCCe--EEEEeccCceE--EEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCc
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSI--YKVFDLKNYTM--LYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~--YrVwdlknYs~--lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
+|.-+-||+ +|++...+...+. +-.+|..+.+. +..+.. ..-..+.+.++-++++.....+ -+-.+|..+|+
T Consensus 73 ~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g--~i~~~d~~~~~ 149 (306)
T 2p4o_A 73 KVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG--AIWLIDVVQPS 149 (306)
T ss_dssp EEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTT--EEEEEETTTTE
T ss_pred CceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCC--eEEEEeCCCCc
Confidence 477788887 6777776654322 44456666553 333332 2223344456666666664333 33344544442
Q ss_pred EEEE-EEeeccc-----C-CccchhhhhcceeeEee-cCCeeeEEEccc-ceEE--EecccccCCCceEEEeecCeEEEE
Q 016020 262 VLKV-FYHLLHR-----N-KKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELM--EVSRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 262 ~l~s-~~~~L~~-----s-k~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~-~ki~--~v~~t~~~~PsAFiFly~~qLFLT 330 (396)
.... ..-.+.+ . ....=+-..+..|++-. .+..|..||+.. +++. ++. .....|..+.+-.+++||++
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEE
T ss_pred EeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-eccCCCCCeEECCCCCEEEE
Confidence 2111 1100000 0 00111123456776665 456889999864 4321 111 12357999999999999999
Q ss_pred EEc-CeEEEEecccceee--eeccccccCCC--C-----CC-CcEEEccCCc
Q 016020 331 FRN-RTVAVWNFRGELVT--SFEDHLLWHPD--C-----NT-NNIYITSDQD 371 (396)
Q Consensus 331 fs~-gti~iWd~~geL~t--~fedh~l~~~~--c-----~~-n~~~it~~qd 371 (396)
-.. +.|.++|.+|++.+ .++... ..|. | ++ +.+|||..+.
T Consensus 229 ~~~~~~V~~~~~~G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 229 THIYNSVVRIAPDRSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CBTTCCEEEECTTCCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eCCCCeEEEECCCCCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCCC
Confidence 876 89999999997643 444332 2222 1 33 5677776543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=88.07 E-value=5 Score=38.37 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=81.9
Q ss_pred eEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEE
Q 016020 229 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELME 307 (396)
Q Consensus 229 VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~ 307 (396)
.|-+.++++ .|....+..+. +..+|++||+.+.++ |+..-.-+=+-..++.|++-- .++.+.+||..+.+++.
T Consensus 57 tqGL~~~~~-~Ly~stG~~g~--v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFHQG-HFFESTGHQGT--LRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEETT-EEEEEETTTTE--EEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEECC-EEEEEcCCCCE--EEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 366666665 44555555444 999999999999988 344221000223456666654 57889999999999887
Q ss_pred ecccccCCCceEEEeecCeEEEEEEcCeEEEEeccc-ceeeeec--c--ccc---cCCCCCCCcEEEcc
Q 016020 308 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-ELVTSFE--D--HLL---WHPDCNTNNIYITS 368 (396)
Q Consensus 308 v~~t~~~~PsAFiFly~~qLFLTfs~gti~iWd~~g-eL~t~fe--d--h~l---~~~~c~~n~~~it~ 368 (396)
.-+.. ..+.+.. ..++.||++=-+++|.++|.+. +.+.+++ + ... -...|.++.+|++.
T Consensus 131 ti~~~-~eGwGLt-~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv 197 (268)
T 3nok_A 131 TTRYS-GEGWGLC-YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI 197 (268)
T ss_dssp EEECS-SCCCCEE-EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEeCC-CceeEEe-cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE
Confidence 54432 2234444 2355677776568999999876 5444432 1 111 12236688888775
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=87.85 E-value=17 Score=33.81 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=102.9
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..+..|.=+-+|..+|.+...+...+.+.++++.+-....-+.+ ..-..|++.| |.|......... -+..++.
T Consensus 76 ~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~--~I~r~~~- 152 (318)
T 3sov_A 76 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP--KIERAGM- 152 (318)
T ss_dssp ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSC--EEEEEET-
T ss_pred CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCC--EEEEEEc-
Confidence 34678999999999999999999999999999976433222322 5678888875 566554433211 1223332
Q ss_pred cCcEEEEEE-eecccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-Ce
Q 016020 259 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RT 335 (396)
Q Consensus 259 tG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gt 335 (396)
+|+....+. --+...+-|.|-+ .+..|++- .....|..+|+..+....+.......|.+..+ .++.+|.|=.. +.
T Consensus 153 dG~~~~~~~~~~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav-~~~~lywtd~~~~~ 230 (318)
T 3sov_A 153 DGSSRFIIINSEIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL-FEDILYWTDWSTHS 230 (318)
T ss_dssp TSCSCEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE-ETTEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE-eCCEEEEEecCCCe
Confidence 454433322 1122223355544 45666664 46778889998655544444456677887765 68899999655 79
Q ss_pred EEEEec-ccceeee
Q 016020 336 VAVWNF-RGELVTS 348 (396)
Q Consensus 336 i~iWd~-~geL~t~ 348 (396)
|..+|. .|+..+.
T Consensus 231 V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 231 ILACNKYTGEGLRE 244 (318)
T ss_dssp EEEEETTTCCSCEE
T ss_pred EEEEECCCCCceEE
Confidence 999998 5764443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=87.36 E-value=2.7 Score=43.91 Aligned_cols=164 Identities=13% Similarity=0.157 Sum_probs=100.8
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC--CeEEEEEecCCCeeeeEEEEee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp--g~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..+..|.-+-+|..+|++...+...+.+.|+++.+-....-+.. .....|++.| |.|.......+. -|..+++
T Consensus 450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~--~I~~~~~- 526 (699)
T 1n7d_A 450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPA--KIKKGGL- 526 (699)
T ss_dssp SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSC--CEEBCCS-
T ss_pred CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCC--eEEEEeC-
Confidence 34678999999988999999888899999999986544433432 4567788875 444433222211 2222332
Q ss_pred cCcEEEEEE-eecccCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecc--cccCCCceEEEeecCeEEEEEEc-
Q 016020 259 DGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 259 tG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~--t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
+|+....+. ..|....-|.|-+ .+..|++-. ....|..+|+..+....+.. .....|.+..+ .++.||+|-..
T Consensus 527 dG~~~~~l~~~~l~~PnGlavd~-~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav-d~~~lywtd~~~ 604 (699)
T 1n7d_A 527 NGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIIN 604 (699)
T ss_dssp SSCCCCEESCSSCSSCCCEEECT-TTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE-ETTEEEEECSTT
T ss_pred CCCCeeEEEeCCCCCccEEEEec-cCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE-ECCEEEEEeCCC
Confidence 344333321 1123333455554 456666554 66789999987655554433 34566777765 56689988866
Q ss_pred CeEEEEec-ccceeeeecc
Q 016020 334 RTVAVWNF-RGELVTSFED 351 (396)
Q Consensus 334 gti~iWd~-~geL~t~fed 351 (396)
+.|..+|. .|+.++.+..
T Consensus 605 ~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp TCEEEEETTTEEEEECCCT
T ss_pred CeEEEEEccCCCceEEeec
Confidence 79999986 5776666644
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=86.98 E-value=6.9 Score=40.19 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=89.4
Q ss_pred CcEEEeecCCCeEEEEeccCc----eEEEEeccC---------ceEEEEEcCCe-EEEEEecCC--CeeeeEEEEeecCc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNY----TMLYSISDK---------HVQEIKISPGI-MLLIFNRSS--SHVPLKILSIEDGT 261 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknY----s~lysIs~~---------~VqEIkiSpg~-~Ll~~q~~~--~~iplkIl~IetG~ 261 (396)
-+.+..+..++.+-|+|.++. +....|..+ .-+.+..+|+= |+-.+..+. ..--+-++|.+|++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 344555666788999999866 788888532 33557788664 332222211 22568999999999
Q ss_pred EEEEEEeecccCC---ccch--hhhhcceeeEe-------------------ecCCeeeEEEcccceEEEeccc--ccCC
Q 016020 262 VLKVFYHLLHRNK---KVDF--IEQFNEKLLVK-------------------QENENLQILDVRNAELMEVSRT--EFMT 315 (396)
Q Consensus 262 ~l~s~~~~L~~sk---~i~F--iE~~~ekLLIK-------------------Qed~~L~I~Dv~~~ki~~v~~t--~~~~ 315 (396)
.+..... .+.. ..+| .+ .++.+++- +.+..|.+||+.+++++.+... ....
T Consensus 176 v~~~~~~--~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 176 PLGKWEI--DRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp EEEECCS--BCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred EEEEEcc--CCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 9997652 2211 1223 34 34455554 3589999999999987764333 2345
Q ss_pred CceEEE--eecCe-EEEEEE-----c-CeEEEEecc
Q 016020 316 PSAFIF--LYENQ-LFLTFR-----N-RTVAVWNFR 342 (396)
Q Consensus 316 PsAFiF--ly~~q-LFLTfs-----~-gti~iWd~~ 342 (396)
|+...| .++++ .|++-. - ++|.+|..+
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 776656 76665 476665 3 677776554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=86.41 E-value=5.4 Score=42.15 Aligned_cols=173 Identities=10% Similarity=0.147 Sum_probs=114.8
Q ss_pred CCeEEEEeccCceEEEEecc-CceEEEEEcC-CeEEEEEecCCCe-----------------------------------
Q 016020 207 DSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSH----------------------------------- 249 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~-~~VqEIkiSp-g~~Ll~~q~~~~~----------------------------------- 249 (396)
++.+.|.|..+.+.+.+|.= .+-.-+.+|| |-.+.+.....+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 56788999999988888773 3556667774 4455455544311
Q ss_pred eeeEEEEeec--CcE-EEEEEeecccC-CccchhhhhcceeeEeec-CCeeeEEEcccce------------EEEecccc
Q 016020 250 VPLKILSIED--GTV-LKVFYHLLHRN-KKVDFIEQFNEKLLVKQE-NENLQILDVRNAE------------LMEVSRTE 312 (396)
Q Consensus 250 iplkIl~Iet--G~~-l~s~~~~L~~s-k~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~k------------i~~v~~t~ 312 (396)
--+.++|..+ |+. +..+.. +.+ --+.|.+ +|.++++--+ ...+-+||+.+.+ +.. -...
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~v 329 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPEL 329 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCBC
T ss_pred CcEEEEeCcccCCceeEEEEec--CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcCC
Confidence 1378888888 655 444431 211 1288888 9999999875 4569999999864 222 2244
Q ss_pred cCCCceEEEeecCeEEEEEEc-CeEEEEeccc-----------ceeeeeccccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 313 FMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 313 ~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-----------eL~t~fedh~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.--|.-..|.+++.+|+|.-- ++|.+||.+. +.+..++-|+-.-.+|-.--+-++.|...+++-||-+
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 567999999999988887655 8999999876 3566676665331122222233567777888888876
Q ss_pred CCC
Q 016020 381 PED 383 (396)
Q Consensus 381 ~~~ 383 (396)
.+.
T Consensus 410 kdr 412 (595)
T 1fwx_A 410 KDR 412 (595)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=86.40 E-value=27 Score=34.56 Aligned_cols=149 Identities=12% Similarity=0.267 Sum_probs=85.6
Q ss_pred EEEeecC--CCeEEEEecc-CceEEEEecc---------CceEEEEE--cC--C-eEEEEEecCCCeeeeEEEEeecCcE
Q 016020 200 VLTYSAQ--DSIYKVFDLK-NYTMLYSISD---------KHVQEIKI--SP--G-IMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 200 Ilt~~a~--d~~YrVwdlk-nYs~lysIs~---------~~VqEIki--Sp--g-~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
+++.+-. +...+||++- ....|..|.+ ..+.-+-+ +| | ..+++........-..|.+-.+|+.
T Consensus 89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI 168 (355)
T ss_dssp EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence 3455555 6789999773 2334777732 44445666 54 3 3455555553222333333344544
Q ss_pred EEEEE--eecccCCccchhhh--hcceeeEeecCCeeeEEEcc-----cceEEE-ecccccC-CCceEEEeecC--e--E
Q 016020 263 LKVFY--HLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVR-----NAELME-VSRTEFM-TPSAFIFLYEN--Q--L 327 (396)
Q Consensus 263 l~s~~--~~L~~sk~i~FiE~--~~ekLLIKQed~~L~I~Dv~-----~~ki~~-v~~t~~~-~PsAFiFly~~--q--L 327 (396)
...+. +.|+. .++++-. -...|++.+|+..|--||.. +++++- +.-++.. .|......+.. + |
T Consensus 169 ~~~lVR~f~lgs--q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 169 SGKKVRAFKMNS--QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEEEEEECSS--CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred cceEEEEecCCC--CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 44332 22443 4555554 46899999999888888866 455554 3333333 57776655442 2 3
Q ss_pred EEEEE-cCeEEEEeccc--ceeeeec
Q 016020 328 FLTFR-NRTVAVWNFRG--ELVTSFE 350 (396)
Q Consensus 328 FLTfs-~gti~iWd~~g--eL~t~fe 350 (396)
|++-. +++..+||.++ +.+++|.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 33332 37999999985 6888883
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=86.39 E-value=12 Score=37.21 Aligned_cols=147 Identities=18% Similarity=0.292 Sum_probs=89.3
Q ss_pred eCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC
Q 016020 194 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (396)
Q Consensus 194 Dd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s 273 (396)
|+....||+.+-. +-..|+|| +.+.|-.+.+-.+.-|-+-||..| .|+. ..+.
T Consensus 37 dp~~s~ii~t~k~-~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l------------------~g~~-~dla------ 89 (355)
T 3amr_A 37 TPQNSKLITTNKK-SGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPL------------------NGKK-VDIA------ 89 (355)
T ss_dssp CGGGCEEEEEETT-TEEEEEET-TSCEEEEECCSCEEEEEEEEEEEE------------------TTEE-EEEE------
T ss_pred CCCccEEEEEcCC-CCEEEEcC-CCcEEEEccCCCcccEEEeccccc------------------CCce-EeEE------
Confidence 5555667766554 56889999 888888887666666666666543 2222 1111
Q ss_pred CccchhhhhcceeeEeec--CCeeeEEEc--ccceEEEecc------cccCCCceEEEe--e-cCe--EEEEEEcCeEEE
Q 016020 274 KKVDFIEQFNEKLLVKQE--NENLQILDV--RNAELMEVSR------TEFMTPSAFIFL--Y-ENQ--LFLTFRNRTVAV 338 (396)
Q Consensus 274 k~i~FiE~~~ekLLIKQe--d~~L~I~Dv--~~~ki~~v~~------t~~~~PsAFiFl--y-~~q--LFLTfs~gti~i 338 (396)
...-+. +..|.+|++ .++++..+.. +....|..+-+. + +++ +|++=.+|.++.
T Consensus 90 ------------~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q 157 (355)
T 3amr_A 90 ------------AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQ 157 (355)
T ss_dssp ------------EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEE
T ss_pred ------------EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEE
Confidence 112234 577888866 6677777732 444788887773 3 344 455555599999
Q ss_pred Eec--------ccceeeeeccccccCCC-CC----CCcEEEccCCcEEEEeccCCCC
Q 016020 339 WNF--------RGELVTSFEDHLLWHPD-CN----TNNIYITSDQDLIISYCKAEPE 382 (396)
Q Consensus 339 Wd~--------~geL~t~fedh~l~~~~-c~----~n~~~it~~qd~ii~~~~~~~~ 382 (396)
|++ .+++|.+|+-- ..+. |. ++.+||+...-= |--..++++
T Consensus 158 ~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~ 211 (355)
T 3amr_A 158 YELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYGRLYIAEEDEA-IWKFSAEPD 211 (355)
T ss_dssp EEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTTEEEEEETTTE-EEEEECSTT
T ss_pred EEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCCeEEEecccce-EEEEeCCcC
Confidence 998 22577776642 2222 54 468898876644 444444443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=85.13 E-value=4.8 Score=41.33 Aligned_cols=151 Identities=6% Similarity=-0.007 Sum_probs=91.2
Q ss_pred CCCeEEeeCCCCcEEEeecCC------CeEEEEeccCceEEEEeccC-c----eEEEEEcCCeEEEEEecC---------
Q 016020 187 WPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLYSISDK-H----VQEIKISPGIMLLIFNRS--------- 246 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d------~~YrVwdlknYs~lysIs~~-~----VqEIkiSpg~~Ll~~q~~--------- 246 (396)
+|-=+-.-+ +| +......+ +.+-|.|.++.+.+=.+... . --++.++|+.-.|+...=
T Consensus 139 ~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 139 RLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred cccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccc
Confidence 444444444 55 44433333 57888888888888777631 1 125778888776666630
Q ss_pred --------CCeeeeEEEEeecCcEEEEEEeeccc--C--Cccch--hhhhcceeeEeec-----C-Ceee----------
Q 016020 247 --------SSHVPLKILSIEDGTVLKVFYHLLHR--N--KKVDF--IEQFNEKLLVKQE-----N-ENLQ---------- 296 (396)
Q Consensus 247 --------~~~iplkIl~IetG~~l~s~~~~L~~--s--k~i~F--iE~~~ekLLIKQe-----d-~~L~---------- 296 (396)
...=.+.+||+++++.+.++. ++. . .+|.| -+ .+.+.++-.| . +++-
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~--vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~ 293 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLT--LGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWN 293 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEE--SCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEe--cCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence 123568999999998888766 221 1 12444 44 6778887776 3 3553
Q ss_pred ---EEEcccceEEEecc-c------ccCCCceEEEeecCe-EEEEEEc-CeEEEEecc
Q 016020 297 ---ILDVRNAELMEVSR-T------EFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 297 ---I~Dv~~~ki~~v~~-t------~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~ 342 (396)
++|+.+.+.....+ . ....|++..++++++ ||++-+. ++|.++|..
T Consensus 294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 44444433222111 0 035689999998765 5666665 899999984
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=84.86 E-value=24 Score=36.57 Aligned_cols=155 Identities=9% Similarity=0.088 Sum_probs=95.5
Q ss_pred cCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCc
Q 016020 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (396)
Q Consensus 185 l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~ 261 (396)
++.|-=++||...|++--.+..++.+..+++.+-...-.+.. .....|++.+ +-.|.+.....+ -+.+++.. |+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~--~I~v~~~d-G~ 112 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTN--RIEVSKLD-GQ 112 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTT--EEEEEETT-ST
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCC--EEEEEecC-CC
Confidence 567888999999999999999999999999876533333332 3456677652 222333333322 33444443 43
Q ss_pred EEEEEE-eecccCCccchhhhhcceeeEeec--CCeeeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-CeE
Q 016020 262 VLKVFY-HLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTV 336 (396)
Q Consensus 262 ~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQe--d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti 336 (396)
....+. .-|..-..|.+-+ .+.+|++-.- +..|...|+.-.....+ -+...+|.+..+-+ ++.||++=.. +.|
T Consensus 113 ~~~~l~~~~l~~P~~iavdp-~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I 190 (628)
T 4a0p_A 113 HRQVLVWKDLDSPRALALDP-AEGFMYWTEWGGKPKIDRAAMDGSERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLI 190 (628)
T ss_dssp TCEEEECSSCCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTSCSCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEeCCCCCcccEEEcc-CCCeEEEeCCCCCCEEEEEeCCCCceEEE-ECCCCCcceEEEccccCEEEEEECCCCEE
Confidence 322221 1111112233322 3668888764 45666677655544433 25678999999988 5788988776 899
Q ss_pred EEEecccc
Q 016020 337 AVWNFRGE 344 (396)
Q Consensus 337 ~iWd~~ge 344 (396)
...|.+|.
T Consensus 191 ~~~d~dG~ 198 (628)
T 4a0p_A 191 ESSNMLGL 198 (628)
T ss_dssp EEEETTSC
T ss_pred EEEcCCCC
Confidence 99999993
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=81.39 E-value=52 Score=33.81 Aligned_cols=231 Identities=10% Similarity=0.103 Sum_probs=124.6
Q ss_pred cceEEEeec-cchhhhhhccccceeeeccccceEEEecCCCCc--eEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDE--VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 89 S~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e--vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
..|..|... +..|-+-+..|+ ..||..++++.-+....... .|.+|+..+.. .|.+ +.. .+|.+....
T Consensus 88 n~I~~i~~d~~g~lWigT~~Gl-~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g-~lwi-~t~-----~gl~~~~~~- 158 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTRDGL-SRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPE-QLLI-STP-----EGLIMFDIK- 158 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSCE-EEEETTTTEEEEECCEETTEECCCCEEEEEETT-EEEE-EET-----TEEEEEETT-
T ss_pred cceeEEEECCCCCEEEEeCCch-heeCCCCCeEEeccccccCCCceEEEEEECCCC-CEEE-EEC-----CceEEEECC-
Confidence 457777665 567888888998 57898888877654322211 27788776533 3333 221 234333211
Q ss_pred hhhhhCCCCCCCcceee-cccCC-CCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE---eccCceEEEEEc-CCeE
Q 016020 166 EYIRRGKPDSGFALFES-ESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS---ISDKHVQEIKIS-PGIM 239 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~-~~l~~-PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys---Is~~~VqEIkiS-pg~~ 239 (396)
.+++ ..+.. ..... .--+-.|. +|++.......+.| .||.++.++..- .....|..|... .|.+
T Consensus 159 ----~~~~----~~~~~~~~~~~~i~~i~~d~-~g~lwigt~~~Gl~-~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 228 (795)
T 4a2l_A 159 ----ESKF----IDDSFSTAMHKTIASTLYRQ-GDQIYIGTSTDGLY-TYSITQKTFEKVIPILGTKQIQAILQQSPTRI 228 (795)
T ss_dssp ----TTEE----ECSSSCHHHHTCCEEEEEEE-TTEEEEEESSSCEE-EEETTTCCEEECC----CCCEEEEEEEETTEE
T ss_pred ----CCEE----EeccCCCCCCcceEEEEECC-CCCEEEEECCCCEE-EEeCCCCeEEEecCCCCCCeeEEEEEcCCCCE
Confidence 1110 00000 00000 12344454 57776654444544 567666553321 123567776654 4444
Q ss_pred EEEEecCCCeeeeEEEEeecCcEEEEEEeec-----ccCCccch-hhhhcceeeEeecCCeeeEEEcccceEEEecccc-
Q 016020 240 LLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-----HRNKKVDF-IEQFNEKLLVKQENENLQILDVRNAELMEVSRTE- 312 (396)
Q Consensus 240 Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L-----~~sk~i~F-iE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~- 312 (396)
. +....+ -|.+++..+++... +.+.. ..+..|.- .+--...|.|.-.+ -|.+||..+++........
T Consensus 229 w-igt~~~---Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~ 302 (795)
T 4a2l_A 229 W-VATEGA---GLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPV 302 (795)
T ss_dssp E-EEEBSS---CEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTT
T ss_pred E-EEECCC---CeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCC
Confidence 3 332221 15667776665332 22110 01122322 23336678888877 7999999999888764332
Q ss_pred ------cCCCceEEEeecCeEEEEEEcCeEEEEecccc
Q 016020 313 ------FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE 344 (396)
Q Consensus 313 ------~~~PsAFiFly~~qLFLTfs~gti~iWd~~ge 344 (396)
.....+...-.++.|++.-.++-+..|+.+..
T Consensus 303 ~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 303 ENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp STTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG
T ss_pred CCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc
Confidence 13345555566889999887788888987764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.64 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.59 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.53 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.5 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.49 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.49 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.48 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.46 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.44 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.43 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.43 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.43 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.4 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.39 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.38 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.38 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.35 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.33 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.28 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.28 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.28 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.25 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.23 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.22 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.2 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.16 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.11 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.01 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.7 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.67 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.63 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.62 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.6 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.54 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.51 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.49 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.32 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.29 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.12 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.04 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.6 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.47 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.37 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.23 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.16 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.08 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.99 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.6 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 95.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.17 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 94.85 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 94.23 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 90.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 89.23 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 89.23 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 89.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 88.76 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 81.87 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=7.3e-14 Score=115.73 Aligned_cols=263 Identities=11% Similarity=0.159 Sum_probs=181.5
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
+.+|..|.+. .++++.-..-|....||..|++.+..+.. +..-|.++-++.....+.+.+ .+. .+....
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~---~~~--~~~~~~--- 87 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS---ADM--TIKLWD--- 87 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CCCEEE---
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccccccccc---ccc--cccccc---
Confidence 4567777665 45677667779999999999999999875 455678888887655544422 111 111111
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEE
Q 016020 166 EYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIF 243 (396)
Q Consensus 166 ~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~ 243 (396)
...++. ...+ ...-....-+.|.+ ++..++....|+.+++||+++.+.+..+.. ..+..+.++|+-.+++.
T Consensus 88 --~~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 88 --FQGFEC---IRTM-HGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp --TTSSCE---EECC-CCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred --cccccc---cccc-ccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence 111110 0000 01111122345555 677788888999999999999999998876 78899999987766666
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEeecccCCc---c-------------------chhhhhcceeeEeecCCeeeEEEcc
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---V-------------------DFIEQFNEKLLVKQENENLQILDVR 301 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i-------------------~FiE~~~ekLLIKQed~~L~I~Dv~ 301 (396)
... ...+++|++.+++.+..+. .+... + ......+..++....|+.+++||+.
T Consensus 161 ~~~--d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 161 CSN--DQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp EET--TSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EeC--CCeEEEEeeccceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 554 5678999999999888765 22222 1 1122245678889999999999999
Q ss_pred cceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCC---CCCCCcEEEccCCc
Q 016020 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHP---DCNTNNIYITSDQD 371 (396)
Q Consensus 302 ~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~---~c~~n~~~it~~qd 371 (396)
+++++.....|.....+..|.++++++++.+. |+|.+||++. +++..|..|.-... .++++++++|+..|
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D 310 (317)
T d1vyhc1 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310 (317)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 99999998999999999999999999998876 9999999975 78888988754321 14555555555444
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.59 E-value=2.5e-13 Score=115.27 Aligned_cols=244 Identities=12% Similarity=0.090 Sum_probs=170.6
Q ss_pred ccceEEEeec--cchhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 016020 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKI 165 (396)
Q Consensus 88 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 165 (396)
..+|..+-+. ..+++.-...|....||..+++.+..+.. +..-|.++-++..+..+++.|. |. .+.......
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~---d~--~i~~~~~~~ 128 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGL---DN--ICSIYNLKT 128 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEET---TC--CEEEEESSS
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeecc---cc--eeecccccc
Confidence 3456665554 34666667789999999999999998875 4456788888877666655331 11 000000000
Q ss_pred --------------------------hhhhhCC---------CCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeE
Q 016020 166 --------------------------EYIRRGK---------PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (396)
Q Consensus 166 --------------------------~~i~~gk---------~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~Y 210 (396)
..+..+. ...............+-.......++..++....|+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 208 (340)
T d1tbga_ 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred cccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceE
Confidence 0000000 00000111111222222333344467778888889999
Q ss_pred EEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccC--Cccchhhhhccee
Q 016020 211 KVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKL 286 (396)
Q Consensus 211 rVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s--k~i~FiE~~~ekL 286 (396)
++||+++.+.+.++.+ ..|..|.++|+-.+++.... ...+++|++.+++.+..+...-+.. ..+.|.+ .+.+|
T Consensus 209 ~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~--d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 285 (340)
T d1tbga_ 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLL 285 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSCEE
T ss_pred EEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeecccccccccccccccCceEEEEECC-CCCEE
Confidence 9999999999999986 77999999987666666555 4668999999999988776322221 2277777 78999
Q ss_pred eEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 287 LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 287 LIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
++..+|+.|+|||+.+++++.+..+|..+..+.-|.+++++++|-+. |+|.|||
T Consensus 286 ~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999999999999999999999999999886 9999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=5.3e-13 Score=113.24 Aligned_cols=173 Identities=12% Similarity=0.162 Sum_probs=132.4
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCC---------------------
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSS--------------------- 247 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~--------------------- 247 (396)
+.|++ +|+.|+..+.|+.++|||+.+.+.+.++.. ..|..+.++|+-.+++.....
T Consensus 61 l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 139 (340)
T d1tbga_ 61 MHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139 (340)
T ss_dssp EEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEE
T ss_pred EEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceec
Confidence 57887 889999999999999999999999988875 779999999764443332111
Q ss_pred ----------------------------------------------------------------CeeeeEEEEeecCcEE
Q 016020 248 ----------------------------------------------------------------SHVPLKILSIEDGTVL 263 (396)
Q Consensus 248 ----------------------------------------------------------------~~iplkIl~IetG~~l 263 (396)
....+++||+++|+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~ 219 (340)
T d1tbga_ 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEE
Confidence 1134778888888888
Q ss_pred EEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec--ccccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 264 KVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 264 ~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~--~t~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
..+. .|+.. +.|.+ .+.+|++...|+.+++||+.+.+..... ..+.....+..|.++++++++-+. |+|.
T Consensus 220 ~~~~---~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~ 295 (340)
T d1tbga_ 220 QTFT---GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp EEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEE
T ss_pred EEEe---CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEE
Confidence 8776 45554 67776 7899999999999999999998877643 445556778899999999888876 9999
Q ss_pred EEeccc-ceeeeeccccccCCC---CCCCcEEEcc
Q 016020 338 VWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 338 iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
+||... +++..+..|.-+... .+++++++|+
T Consensus 296 iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 999865 899999988654321 3444444444
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.50 E-value=3.4e-13 Score=120.89 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=138.6
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE--ec--cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--IS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys--Is--~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
.++|.+ +|+.++..+.|+.++|||+.+.+.+++ +. ...|.+|+++|+--+++.........++||++++|+....
T Consensus 63 ~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~ 141 (311)
T d1nr0a1 63 VAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141 (311)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred EEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence 456887 899999999999999999999875433 43 4789999999876666666555556789999999998876
Q ss_pred EEeecccCCc---cchhhhhcce-eeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEe
Q 016020 266 FYHLLHRNKK---VDFIEQFNEK-LLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ek-LLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd 340 (396)
+. .|+.. ++|.+ .+++ |+....|+.|+|||+.++++......+.....+..|.++++++++-+. |+|.+||
T Consensus 142 l~---~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d 217 (311)
T d1nr0a1 142 LT---GQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 217 (311)
T ss_dssp CC---CCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cc---ccccccccccccc-cceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccc
Confidence 65 45554 66766 6676 556889999999999999999999999999999999999999998876 9999999
Q ss_pred ccc-ceeeeecccccc---CC-------CCCCCcEEEccCCc
Q 016020 341 FRG-ELVTSFEDHLLW---HP-------DCNTNNIYITSDQD 371 (396)
Q Consensus 341 ~~g-eL~t~fedh~l~---~~-------~c~~n~~~it~~qd 371 (396)
.+. +.+..|+..... |. .++++++++|+..|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D 259 (311)
T d1nr0a1 218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259 (311)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccccccccccccccCCCCCEEEEEeCC
Confidence 876 566666543221 11 15677777776555
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=7e-12 Score=110.01 Aligned_cols=235 Identities=12% Similarity=0.141 Sum_probs=161.3
Q ss_pred cceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
..|..|-... .+++.-...|.-..|+..+++.+..+.. +...|.++-++.....+++.+ .+. .++ ....
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~---~~~--~i~--~~d~- 192 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGS---GDR--TVR--IWDL- 192 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--EEE--EEET-
T ss_pred CCEEEEEECCCCCcceeccccccccccccccccccccccc-ccccccccccccccccccccc---cce--eee--eeec-
Confidence 3455555443 3666677888999999999998888765 445677788887666665533 121 122 2211
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---------CceEEEEEcCC
Q 016020 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPG 237 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---------~~VqEIkiSpg 237 (396)
+ ..........-..+--+.|.+.+|..++....|+.+++||+++.+.+..+.. ..|..+.++|+
T Consensus 193 --~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 193 --R-----TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265 (388)
T ss_dssp --T-----TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred --c-----ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence 1 1122222222233444567777899999999999999999999998888764 35899999987
Q ss_pred eEEEEEecCCCeeeeEEEEeecCcEEEEEE---------eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceE
Q 016020 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFY---------HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 238 ~~Ll~~q~~~~~iplkIl~IetG~~l~s~~---------~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
-.+|+.... ...++||++.+++...... ....++.. +.|.+ .+++|+...+|+.|++||+.++++
T Consensus 266 ~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 266 GQSVVSGSL--DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp SSEEEEEET--TSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEEC--CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcE
Confidence 666666555 4578999999887654322 11233333 67777 789999999999999999999999
Q ss_pred EEecccccCCCceEEE------eecCeEEEEEEc-CeEEEEecc
Q 016020 306 MEVSRTEFMTPSAFIF------LYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiF------ly~~qLFLTfs~-gti~iWd~~ 342 (396)
+.+..+|...+.+.-+ .+++++++|-+. |+|.|||++
T Consensus 343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999888877654 568899999886 999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=5.7e-12 Score=106.28 Aligned_cols=253 Identities=14% Similarity=0.155 Sum_probs=164.5
Q ss_pred cceEEEeec-cchhhhhhccccceeeeccccceEEEecCCCCceE-EEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 89 TKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI-RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 89 S~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evI-rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
..|..|-.. ..+++.-...|....++..+++............. ....+..+...+++.| .+ ..++.-.++-.
T Consensus 54 ~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d-~~i~iw~~~~~ 128 (355)
T d1nexb2 54 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS----RD-NTLHVWKLPKE 128 (355)
T ss_dssp SCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE----TT-SEEEEEECCC-
T ss_pred CCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeec----CC-CcEEEEEccCC
Confidence 345555444 34555556678888888887776665555444433 3333333333333322 22 22332222111
Q ss_pred h-hh-hC---------CCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEE
Q 016020 167 Y-IR-RG---------KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIK 233 (396)
Q Consensus 167 ~-i~-~g---------k~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIk 233 (396)
. +. .+ ....+...+....-.+.+-+.....+|..++....|+.+++||+.+.+.+....+ ..+..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 208 (355)
T d1nexb2 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208 (355)
T ss_dssp ----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccc
Confidence 1 00 00 0111122333344455666666666889999999999999999999999988876 7788888
Q ss_pred EcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc
Q 016020 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (396)
Q Consensus 234 iSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~ 313 (396)
++|.--.++.... ...++||++++|+.+..+. .|+..|.-+...+++|++...|+.|++||+.+.+.... .|.
T Consensus 209 ~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~ 281 (355)
T d1nexb2 209 YDHERKRCISASM--DTTIRIWDLENGELMYTLQ---GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS--YHH 281 (355)
T ss_dssp EETTTTEEEEEET--TSCEEEEETTTCCEEEEEC---CCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEE--EEC
T ss_pred ccccceeeecccc--cceEEeeeccccccccccc---cccccccccccccceeeeeecccccccccccccceecc--ccc
Confidence 8876666566555 3568899999999999887 67777666666778999999999999999998765433 344
Q ss_pred CCCceE-EEeecCeEEEEEEcCeEEEEecc-ccee-eeecccc
Q 016020 314 MTPSAF-IFLYENQLFLTFRNRTVAVWNFR-GELV-TSFEDHL 353 (396)
Q Consensus 314 ~~PsAF-iFly~~qLFLTfs~gti~iWd~~-geL~-t~fedh~ 353 (396)
..+.+. .|.++++++.+-++|+|.+||++ |+++ +.+..|.
T Consensus 282 ~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~ 324 (355)
T d1nexb2 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA 324 (355)
T ss_dssp TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTC
T ss_pred CCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCC
Confidence 444444 45678888888888999999987 5766 4566664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.48 E-value=1.8e-12 Score=116.08 Aligned_cols=238 Identities=10% Similarity=0.111 Sum_probs=162.3
Q ss_pred ceEEEeec--cchhhhhhccccceeeeccccceEEEe-cCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 016020 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFL-NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (396)
Q Consensus 90 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~l-N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 166 (396)
.|.-+-.. ..+|+.-...|...+||..+++.+... =.....-|.+|-++..+.-|+++| ...+ . .++..
T Consensus 60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--~~~~-~--~~~v~--- 131 (311)
T d1nr0a1 60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG--EGRE-R--FGHVF--- 131 (311)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE--CCSS-C--SEEEE---
T ss_pred CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccc--cccc-c--ccccc---
Confidence 34444333 356666677899999998888765432 234456789999998777676654 1111 1 12222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEe
Q 016020 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFN 244 (396)
Q Consensus 167 ~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q 244 (396)
++..|+... .|-. .-...--+.|++.+.-.++..+.|+.+++||+++++.+..+.+ ..|..+.++|+-.+++..
T Consensus 132 ~~~~~~~~~--~l~~--h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 132 LFDTGTSNG--NLTG--QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp ETTTCCBCB--CCCC--CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccc--cccc--cccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence 222332211 1100 0011123678874444688888999999999999999999986 789999999887777766
Q ss_pred cCCCeeeeEEEEeecCcEEEEEEe----ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCc
Q 016020 245 RSSSHVPLKILSIEDGTVLKVFYH----LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 317 (396)
Q Consensus 245 ~~~~~iplkIl~IetG~~l~s~~~----~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps 317 (396)
.. .-.+.+|++.+|+.+..+.. ...|+.. +.|.+ .+.+|+....|+.|+|||+.+++++++.+.+...+.
T Consensus 208 ~~--d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~ 284 (311)
T d1nr0a1 208 GG--DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284 (311)
T ss_dssp ET--TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred cc--cccccccccccccccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence 55 45689999999999987752 2234444 68876 789999999999999999999999987766654333
Q ss_pred e-EEEeecCeEEEEEEc-CeEEEEecc
Q 016020 318 A-FIFLYENQLFLTFRN-RTVAVWNFR 342 (396)
Q Consensus 318 A-FiFly~~qLFLTfs~-gti~iWd~~ 342 (396)
. .-+.+.++.+++.+. |.|.+||.+
T Consensus 285 ~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 285 QQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 2 234556666777765 999999964
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.4e-11 Score=109.07 Aligned_cols=244 Identities=15% Similarity=0.148 Sum_probs=166.8
Q ss_pred cccceeeeccccce---EE-EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc-ee
Q 016020 107 SGVCAAFSRETNRR---IC-FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL-FE 181 (396)
Q Consensus 107 sG~c~af~~~t~~~---ic-~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L-F~ 181 (396)
-|....||..+++. +. .....++.-|++|-++++...|++.| .|. .++.--+. ...+. ..
T Consensus 71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~---~dg--~i~iwd~~----------~~~~~~~~ 135 (337)
T d1gxra_ 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EAS--TLSIWDLA----------APTPRIKA 135 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SSS--EEEEEECC----------CC--EEEE
T ss_pred CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee---ccc--cccccccc----------cccccccc
Confidence 57778888665432 23 33456777899999998777766543 222 33333221 11111 11
Q ss_pred ecccCCC--CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEe
Q 016020 182 SESLKWP--GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 182 ~~~l~~P--gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~I 257 (396)
......+ -.+.|++ ++..++....|+.+++||+.+.+....... ..|..+.+++.-..++.... ...++||++
T Consensus 136 ~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~--d~~v~i~d~ 212 (337)
T d1gxra_ 136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL--DNTVRSWDL 212 (337)
T ss_dssp EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEET
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence 1111111 1345666 788888889999999999999998888775 78999999977655555544 456899999
Q ss_pred ecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
++|+.+..+.+. ..-..+.|.+ .+++|++...|+.+++||+.++++... ..|.....+.-|.+++++++|.+. |+|
T Consensus 213 ~~~~~~~~~~~~-~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~~l~s~s~Dg~i 289 (337)
T d1gxra_ 213 REGRQLQQHDFT-SQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLL 289 (337)
T ss_dssp TTTEEEEEEECS-SCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccceeecccccc-cceEEEEEcc-cccccceeccccccccccccccccccc-cccccccceEEECCCCCEEEEEeCCCeE
Confidence 999998877621 1112266766 788999999999999999999998754 567778899999999999999887 999
Q ss_pred EEEeccc-ceeeeeccc--cccCCCCCCCcEEEccCCc
Q 016020 337 AVWNFRG-ELVTSFEDH--LLWHPDCNTNNIYITSDQD 371 (396)
Q Consensus 337 ~iWd~~g-eL~t~fedh--~l~~~~c~~n~~~it~~qd 371 (396)
.+||... +.+..++.+ +.....++++++++|+..|
T Consensus 290 ~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D 327 (337)
T d1gxra_ 290 NAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred EEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 9999986 555544422 2222235666666665444
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.1e-12 Score=108.58 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=129.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
+.|++ +|+.|+..+.|+.+||||+.+.+.+.++.+ ..|..+.++|+-.+++.... ...+.+++...++....+.
T Consensus 23 l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~- 98 (317)
T d1vyhc1 23 VIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA--DMTIKLWDFQGFECIRTMH- 98 (317)
T ss_dssp EEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET--TSCCCEEETTSSCEEECCC-
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc--ccccccccccccccccccc-
Confidence 67887 788888899999999999999999999975 88999999988777776666 3455677777777666544
Q ss_pred ecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-
Q 016020 269 LLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG- 343 (396)
Q Consensus 269 ~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g- 343 (396)
.+... +.|.+ .++.|++...|+.+++||+.+++...+...+.....+..|.++++++++.+. |+|.+|+...
T Consensus 99 --~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 175 (317)
T d1vyhc1 99 --GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175 (317)
T ss_dssp --CCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred --cccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence 33333 56665 7889999999999999999999999999999999999999999999999887 9999999987
Q ss_pred ceeeeecccc
Q 016020 344 ELVTSFEDHL 353 (396)
Q Consensus 344 eL~t~fedh~ 353 (396)
+.+..++.|.
T Consensus 176 ~~~~~~~~~~ 185 (317)
T d1vyhc1 176 ECKAELREHR 185 (317)
T ss_dssp CEEEEECCCS
T ss_pred eeeEEEecCC
Confidence 5666666553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.5e-11 Score=106.38 Aligned_cols=238 Identities=13% Similarity=0.154 Sum_probs=160.9
Q ss_pred cceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEee
Q 016020 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF---VEFD 194 (396)
Q Consensus 118 ~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---VEFD 194 (396)
++.+-.+ ++.+.|.+|=++....-|++ ++|+ +++.- ++..+. ...++.......|.+. +.|.
T Consensus 42 ~~~~~~~--~H~~~V~~v~fs~~g~~lat----g~dg--~V~iW-----d~~~~~--~~~~~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 42 ARQINTL--NHGEVVCAVTISNPTRHVYT----GGKG--CVKVW-----DISHPG--NKSPVSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEEEEE--CCSSCCCEEEECSSSSEEEE----ECBS--EEEEE-----ETTSTT--CCSCSEEEECSCTTSBEEEEEEC
T ss_pred ceEEEEC--CCCCcEEEEEECCCCCEEEE----EECC--EEEEE-----EccCCc--ccceeEEeeecCCCCcEEEEEEc
Confidence 3344444 45566777777765555544 2354 23332 222221 1223334444456665 5788
Q ss_pred CCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec
Q 016020 195 DVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (396)
Q Consensus 195 d~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L 270 (396)
+ +|+.|+..+.|+.++|||+.+.+ ...++.. ..+..+.++|+-.+++.... ...+++|++++++......
T Consensus 107 ~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~~~~~~~~~~~~~--- 180 (337)
T d1gxra_ 107 P-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQ--- 180 (337)
T ss_dssp T-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEEC---
T ss_pred C-CCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccc---
Confidence 7 88999988999999999998654 5566654 67899999988777766554 5678999999999887665
Q ss_pred ccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ce
Q 016020 271 HRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-EL 345 (396)
Q Consensus 271 ~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL 345 (396)
.+... ++|.+ .++.+++...|+.+++||+.+++.++... +..++.+.-|.++++++++-+. |.|.+||++. ++
T Consensus 181 ~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 258 (337)
T d1gxra_ 181 GHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred ccccccccccccc-cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccc
Confidence 44454 56666 78999999999999999999999887653 4567788889999998887666 9999999998 44
Q ss_pred eeeeccccccC---CCCCCCcEEEccCCcEEEEeccC
Q 016020 346 VTSFEDHLLWH---PDCNTNNIYITSDQDLIISYCKA 379 (396)
Q Consensus 346 ~t~fedh~l~~---~~c~~n~~~it~~qd~ii~~~~~ 379 (396)
.. ...|.-.. ...++++.++|...|=.|.-.+.
T Consensus 259 ~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~ 294 (337)
T d1gxra_ 259 YQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp EE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cc-ccccccccceEEECCCCCEEEEEeCCCeEEEEEC
Confidence 43 33333221 11566777777666644444443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.43 E-value=8.9e-12 Score=106.49 Aligned_cols=242 Identities=13% Similarity=0.170 Sum_probs=158.6
Q ss_pred ceEEEeecc--chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 016020 90 KVIEIVAAR--DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (396)
Q Consensus 90 ~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 167 (396)
+|..|-+.. .+++.-..-|....||..+|+.+-.+...+...|.++-+++++ .+++++ .|+ +++.-...-..
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~---~d~--~v~~~~~~~~~ 87 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVS---WDD--HLKVVPAGGSG 87 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEE---TTT--EEEEECSSSSS
T ss_pred CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeeccc---cee--eEEEeccCCcc
Confidence 344444332 2444445568889999999998888877788899999999765 455433 232 12111110000
Q ss_pred h--------------------hhCCCC-----CCCcceee-----ccc-CCCCeEEeeCCCCcEEEeecCCCeEEEEecc
Q 016020 168 I--------------------RRGKPD-----SGFALFES-----ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 216 (396)
Q Consensus 168 i--------------------~~gk~~-----~~~~LF~~-----~~l-~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk 216 (396)
+ ..|+.- ..-.++.. ... ..+.-+.|.+ +|+.++....|+.+++||++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~ 166 (299)
T d1nr0a2 88 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLS 166 (299)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 0 011110 00011111 011 1233456666 78889988999999999999
Q ss_pred CceEE--EEec-cCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEee
Q 016020 217 NYTML--YSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQ 290 (396)
Q Consensus 217 nYs~l--ysIs-~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQ 290 (396)
+.+.. ..+. ...|..+.++|.-..|+.... ...+++|++.++..+....-+-.|... +.|.+ .+.+|++..
T Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs 243 (299)
T d1nr0a2 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGS 243 (299)
T ss_dssp TTEEEEEEEEECSSCEEEEEECTTSSEEEEEET--TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc-cccceEEEc
Confidence 98743 3344 377999999987655555544 346899999999988765544455555 57777 899999999
Q ss_pred cCCeeeEEEcccceEE--EecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 291 ENENLQILDVRNAELM--EVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 291 ed~~L~I~Dv~~~ki~--~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
.|+.++|||+.+++.. .....+...+-..+|.++++.++|-++ |+|++||+
T Consensus 244 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence 9999999999986533 344455555656667777788888876 99999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1.6e-11 Score=103.42 Aligned_cols=175 Identities=16% Similarity=0.269 Sum_probs=126.4
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEE-
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY- 267 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~- 267 (396)
+.|| |+.|+..+.|+.+||||+.+++++.++.+ ..|..++++|+-.|+. ... +..+++|++.+++......
T Consensus 19 ~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s-~s~--D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 19 LQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GST--DRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp EEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEE-EET--TCCEEEEETTTTEEEEEECC
T ss_pred EEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEE-Eec--cccccccccccccccccccc
Confidence 4565 56777788999999999999999999986 8899999999876543 332 3445555555544332111
Q ss_pred -----------------eec----------------------------------------------ccCCccchhhhhcc
Q 016020 268 -----------------HLL----------------------------------------------HRNKKVDFIEQFNE 284 (396)
Q Consensus 268 -----------------~~L----------------------------------------------~~sk~i~FiE~~~e 284 (396)
.++ .+...+......++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (355)
T d1nexb2 93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172 (355)
T ss_dssp CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence 000 01111223333567
Q ss_pred eeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC-CCC
Q 016020 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD-CNT 361 (396)
Q Consensus 285 kLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~-c~~ 361 (396)
.++....|..+++||+.+++...+...+.....+..|.++++++++.+. |+|.+||.+. +++..++.|.....- ..+
T Consensus 173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc
Confidence 8889999999999999999999999999999999999999998888777 9999999987 688888888655322 233
Q ss_pred CcEEEccCCc
Q 016020 362 NNIYITSDQD 371 (396)
Q Consensus 362 n~~~it~~qd 371 (396)
+++++++..|
T Consensus 253 ~~~l~~~~~d 262 (355)
T d1nexb2 253 DKFLVSAAAD 262 (355)
T ss_dssp SSEEEEECTT
T ss_pred cceeeeeecc
Confidence 4555555544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-10 Score=97.57 Aligned_cols=239 Identities=14% Similarity=0.229 Sum_probs=149.5
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehh------------
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE------------ 166 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~------------ 166 (396)
++|+.-..-|....||..|++.+..+.. +..-|.++-++. +.|++.| .|. .++.......
T Consensus 28 ~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~--~~l~s~s---~D~--~~~~~~~~~~~~~~~~~~~~~~ 99 (342)
T d2ovrb2 28 NRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD--NIIISGS---TDR--TLKVWNAETGECIHTLYGHTST 99 (342)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEET--TEEEEEE---TTS--CEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCC--Cccccce---ecc--cccccccccccceeccccccee
Confidence 4555556678899999999999999875 445677888874 3444433 222 1111111100
Q ss_pred ---------hhhhCCCCCCCccee-------ecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceE
Q 016020 167 ---------YIRRGKPDSGFALFE-------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQ 230 (396)
Q Consensus 167 ---------~i~~gk~~~~~~LF~-------~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~Vq 230 (396)
.+..|..+..-.++. ......++.......++..++....|+.+++||++..+.+..+.+....
T Consensus 100 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 179 (342)
T d2ovrb2 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179 (342)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred EeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccc
Confidence 000000000000000 0011122222333335566677788999999999999999999885555
Q ss_pred EEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc
Q 016020 231 EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 231 EIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~ 310 (396)
...++++-..++.... +..++||++++++.+..+. .+...+.=+...+++|++...|+.|++||+.+.+......
T Consensus 180 ~~~~~~~~~~l~s~~~--dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 254 (342)
T d2ovrb2 180 VYSLQFDGIHVVSGSL--DTSIRVWDVETGNCIHTLT---GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254 (342)
T ss_dssp EEEEEECSSEEEEEET--TSCEEEEETTTCCEEEEEC---CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccccCCCCEEEEEeC--CCeEEEeecccceeeeEec---ccccceeEEecCCCEEEEEcCCCEEEEEeccccccccccc
Confidence 5555433333344433 4568999999999998776 5555544344467899999999999999999998887766
Q ss_pred cccCCCceEEE-eecCeEEEEEEc-CeEEEEecc-cceeeeec
Q 016020 311 TEFMTPSAFIF-LYENQLFLTFRN-RTVAVWNFR-GELVTSFE 350 (396)
Q Consensus 311 t~~~~PsAFiF-ly~~qLFLTfs~-gti~iWd~~-geL~t~fe 350 (396)
.+......... .+++++++|.++ |+|++||++ |+++..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence 65554444333 346678888876 999999987 57776653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8e-11 Score=98.60 Aligned_cols=155 Identities=11% Similarity=0.147 Sum_probs=119.6
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~ 264 (396)
++..+-.-..+|..++..+.|+.+++||+.+.+.+..+.+ ..+..+.++++.+ +.... +..++||++.+++...
T Consensus 176 ~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l--~s~s~--d~~i~iwd~~~~~~~~ 251 (342)
T d2ovrb2 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL--VSGNA--DSTVKIWDIKTGQCLQ 251 (342)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEE--EEEET--TSCEEEEETTTCCEEE
T ss_pred cccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEE--EEEcC--CCEEEEEecccccccc
Confidence 3444444445788899999999999999999999998887 6688888888754 33333 4568999999999988
Q ss_pred EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-----cccCCCceEEEeecCeEEEEEEc-Ce---
Q 016020 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-----TEFMTPSAFIFLYENQLFLTFRN-RT--- 335 (396)
Q Consensus 265 s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-----t~~~~PsAFiFly~~qLFLTfs~-gt--- 335 (396)
.+.-...+...+..+...+++++...+|+.|+|||+.+++++.... .+.....+.-|.+++.++.+-+. |+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~ 331 (342)
T d2ovrb2 252 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331 (342)
T ss_dssp EECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred cccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCee
Confidence 8774445555655566577899999999999999999999887543 34455677888998887777655 65
Q ss_pred -EEEEecccce
Q 016020 336 -VAVWNFRGEL 345 (396)
Q Consensus 336 -i~iWd~~geL 345 (396)
+.+|||+-+|
T Consensus 332 ~l~~~Df~~~~ 342 (342)
T d2ovrb2 332 KLLVLDFDVDM 342 (342)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 9999998764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.38 E-value=1.8e-11 Score=110.32 Aligned_cols=149 Identities=7% Similarity=0.078 Sum_probs=120.8
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
=+-|++ +|+.++..+.|+.++|||+.+.+ ++..+.+ ..|..|.|||+-.+|+.... +..++||++.+++....
T Consensus 12 ~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~--D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 12 CHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp EEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEE
T ss_pred EEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC--CCeEEEEeecccccccc
Confidence 356777 89999999999999999997654 7777775 78999999987776676655 56789999999988777
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccce----EEEecccccCCCceEEEeecCeEEEEEEc-CeEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVA 337 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~k----i~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~ 337 (396)
+.+ ..++.. ++|.+ .+++|++...|+.+++|++.... +......+...+.+.-|.++++++++-+. |+|.
T Consensus 89 ~~~-~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 89 LVI-LRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEC-CCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccc-cccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence 663 245554 77887 89999999999999999998754 33456677778889999999999998876 9999
Q ss_pred EEeccc
Q 016020 338 VWNFRG 343 (396)
Q Consensus 338 iWd~~g 343 (396)
+||...
T Consensus 167 v~~~~~ 172 (371)
T d1k8kc_ 167 IFSAYI 172 (371)
T ss_dssp EEECCC
T ss_pred EEeecc
Confidence 999864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=1.2e-11 Score=108.52 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=129.4
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--------------------CceEEEEEcCCeEEEEEecCCCee
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------------------KHVQEIKISPGIMLLIFNRSSSHV 250 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--------------------~~VqEIkiSpg~~Ll~~q~~~~~i 250 (396)
+.|++ +|+.||..+ |+.++|||+.+.+.+.++.+ ..|..|.+||+--+|+.... +.
T Consensus 68 l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~--dg 143 (388)
T d1erja_ 68 VKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE--DR 143 (388)
T ss_dssp EEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET--TS
T ss_pred EEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc--cc
Confidence 67887 899998765 99999999999999988864 23889999987666666555 45
Q ss_pred eeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE
Q 016020 251 PLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL 327 (396)
.+++|+..+|+.+..+. .+... ++|.+ .+..++....++.+++||+.+.........+........+..++++
T Consensus 144 ~v~i~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T d1erja_ 144 LIRIWDIENRKIVMILQ---GHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219 (388)
T ss_dssp CEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred ccccccccccccccccc---ccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCe
Confidence 68999999999998776 55555 56666 7889999999999999999999988877766665555555557788
Q ss_pred EEEEEc-CeEEEEeccc-ceeeeecccccc---CC-------CCCCCcEEEccCCcE
Q 016020 328 FLTFRN-RTVAVWNFRG-ELVTSFEDHLLW---HP-------DCNTNNIYITSDQDL 372 (396)
Q Consensus 328 FLTfs~-gti~iWd~~g-eL~t~fedh~l~---~~-------~c~~n~~~it~~qd~ 372 (396)
+++-+. |+|.+||.+. ..+..++..... |. ..++++.++|...|=
T Consensus 220 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~ 276 (388)
T d1erja_ 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276 (388)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 887765 9999999986 455544432211 11 145666666665553
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=3e-11 Score=107.51 Aligned_cols=185 Identities=10% Similarity=0.063 Sum_probs=139.0
Q ss_pred eEEeeC-CCCcEEEeecCCCeEEEEeccCceEE----------EEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEee
Q 016020 190 FVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTML----------YSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 190 fVEFDd-~NgkIlt~~a~d~~YrVwdlknYs~l----------ysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Ie 258 (396)
-|.|.+ .||++|+..+.|+++||||+.+.+.+ |......|..|.++++-..++........-+++|+.+
T Consensus 68 ~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~ 147 (325)
T d1pgua1 68 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147 (325)
T ss_dssp EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred EEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeec
Confidence 478875 58999999999999999999765522 3333467899999987666666666667779999999
Q ss_pred cCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEec---ccccCCCceEEEeec-CeEEEEE
Q 016020 259 DGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFMTPSAFIFLYE-NQLFLTF 331 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~---~t~~~~PsAFiFly~-~qLFLTf 331 (396)
+|+.+..+. .|... +.|.+.....++...+|..+++||+.+.+..... ..+...+.+.-|.++ +.++++.
T Consensus 148 ~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~ 224 (325)
T d1pgua1 148 SGNSLGEVS---GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224 (325)
T ss_dssp TCCEEEECC---SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ccccceeee---ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccc
Confidence 999888776 55555 6777743344667889999999999998877643 455566778889986 5777777
Q ss_pred Ec-CeEEEEeccc-ceeeeeccccccCCC---C---CCCcEEEccCCcEEEEec
Q 016020 332 RN-RTVAVWNFRG-ELVTSFEDHLLWHPD---C---NTNNIYITSDQDLIISYC 377 (396)
Q Consensus 332 s~-gti~iWd~~g-eL~t~fedh~l~~~~---c---~~n~~~it~~qd~ii~~~ 377 (396)
+. |+|.+||.+- +.+..|+.|..++.. + +++..++|...|=.|--.
T Consensus 225 ~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw 278 (325)
T d1pgua1 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW 278 (325)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred ccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence 65 9999999875 788999999887654 2 677788877666544433
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=5.3e-11 Score=107.25 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=131.3
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
+.|++ +|+.|+..+.|+.++|||+.+.+ ....+.+ ..|..++++|+-..++.... ...+++|+++.+.....+
T Consensus 57 l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~--d~~i~i~~~~~~~~~~~~ 133 (371)
T d1k8kc_ 57 VDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVC 133 (371)
T ss_dssp EEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEE
T ss_pred EEECC-CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecc--cCcceeeeeecccccccc
Confidence 57887 78888888899999999999766 4444543 67999999987766666555 345789999998877665
Q ss_pred Eeecc-cCCc---cchhhhhcceeeEeecCCeeeEEEcccc------------------eEEEecccccCCCceEEEeec
Q 016020 267 YHLLH-RNKK---VDFIEQFNEKLLVKQENENLQILDVRNA------------------ELMEVSRTEFMTPSAFIFLYE 324 (396)
Q Consensus 267 ~~~L~-~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~------------------ki~~v~~t~~~~PsAFiFly~ 324 (396)
...+. +... +.|.+ .+.+|++...|+.+++||+... +++.....+.....+.-|.++
T Consensus 134 ~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 212 (371)
T d1k8kc_ 134 KHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212 (371)
T ss_dssp EEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred cccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence 54332 2333 77777 7899999999999999998753 355566677777788889999
Q ss_pred CeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCCcEEEcc
Q 016020 325 NQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTNNIYITS 368 (396)
Q Consensus 325 ~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n~~~it~ 368 (396)
++.+++.+. |+|.+||.+. +.+..+..|..+... .++++++.+.
T Consensus 213 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g 261 (371)
T d1k8kc_ 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG 261 (371)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred cccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE
Confidence 999888886 9999999988 677788887665322 4566655554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.8e-10 Score=94.20 Aligned_cols=169 Identities=11% Similarity=0.225 Sum_probs=114.1
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEE----------
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK---------- 264 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~---------- 264 (396)
+|+.|+..+.|+.+||||+.+.+++.++.+ ..|..|.+.+.. | +.... +..+++|++.+|....
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~-l-~s~s~--D~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV-I-ITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVL 99 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSE-E-EEEET--TSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccce-e-ecccc--cccccccccccccccccccccccccc
Confidence 477888899999999999999999999986 789999886553 3 33333 3456666666655444
Q ss_pred ------------------------------EEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccC
Q 016020 265 ------------------------------VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM 314 (396)
Q Consensus 265 ------------------------------s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~ 314 (396)
....+..+...+.........++....|+.+++||+.+++.+....++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~ 179 (293)
T d1p22a2 100 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179 (293)
T ss_dssp EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccc
Confidence 22222344444555555667788888999999999999999988777665
Q ss_pred CCceEEEeecCeEEEE-EEcCeEEEEeccc-ceeeeeccccccCCC-CCCCcEEEccCCc
Q 016020 315 TPSAFIFLYENQLFLT-FRNRTVAVWNFRG-ELVTSFEDHLLWHPD-CNTNNIYITSDQD 371 (396)
Q Consensus 315 ~PsAFiFly~~qLFLT-fs~gti~iWd~~g-eL~t~fedh~l~~~~-c~~n~~~it~~qd 371 (396)
....+-+ .+..+++ ..+|+|.+||.+. ..+..+..|..+... ..+++.++|...|
T Consensus 180 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d 237 (293)
T d1p22a2 180 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 237 (293)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETT
T ss_pred ccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCC
Confidence 5444433 3444444 4459999999988 566666666554322 3334444444333
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.5e-09 Score=88.65 Aligned_cols=244 Identities=11% Similarity=0.157 Sum_probs=157.9
Q ss_pred chhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 016020 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (396)
Q Consensus 99 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 178 (396)
..|+.=..-|....||..+++.+..|..-.+ -|.+|=+| ++.|++.| .|. .++... +..|. .
T Consensus 26 ~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~v~~~--~~~l~s~s---~D~--~i~~~~-----~~~~~-----~ 87 (293)
T d1p22a2 26 QKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYD--ERVIITGS---SDS--TVRVWD-----VNTGE-----M 87 (293)
T ss_dssp SEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECC--SSEEEEEE---TTS--CEEEEE-----SSSCC-----E
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEeeeecc--cceeeccc---ccc--cccccc-----ccccc-----c
Confidence 4555556779999999999999999975444 45777664 23443322 333 222221 22211 1
Q ss_pred ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE---EEec--cCceEEEEEcCCeEEEEEecCCCeeeeE
Q 016020 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLK 253 (396)
Q Consensus 179 LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l---ysIs--~~~VqEIkiSpg~~Ll~~q~~~~~iplk 253 (396)
... ..........+.. ....++....++..++||+.+.... .... ...+..+.+.+...+... ....++
T Consensus 88 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s----~d~~i~ 161 (293)
T d1p22a2 88 LNT-LIHHCEAVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS----GDRTIK 161 (293)
T ss_dssp EEE-ECCCCSCEEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE----TTSEEE
T ss_pred ccc-ccccccccccccc-cccceeecccccceeEeeccccccccccccccccccccccceeccccccccc----CCCcee
Confidence 111 1122223333333 3455666778999999999987632 2222 256777777777654322 246799
Q ss_pred EEEeecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc
Q 016020 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN 333 (396)
Q Consensus 254 Il~IetG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~ 333 (396)
+|++.+++.+..+. .+...+..+...+.+|+....|+.|+|||+.+.+.+....++.....+ +..+++.+++-+.
T Consensus 162 ~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~ 236 (293)
T d1p22a2 162 VWNTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY 236 (293)
T ss_dssp EEETTTCCEEEEEE---CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET
T ss_pred eecCCCCcEEEEEc---ccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC
Confidence 99999999999887 566666666667889999999999999999999999988777665543 4566777777766
Q ss_pred -CeEEEEeccc----------ceeeeeccccccCCC-CCCCcEEEccCCc
Q 016020 334 -RTVAVWNFRG----------ELVTSFEDHLLWHPD-CNTNNIYITSDQD 371 (396)
Q Consensus 334 -gti~iWd~~g----------eL~t~fedh~l~~~~-c~~n~~~it~~qd 371 (396)
|+|.+||+.+ ..+..+..|.-.... +.+++.++|+..|
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~D 286 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHD 286 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSS
T ss_pred CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecC
Confidence 9999999865 244566666543221 3345555555444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=8e-11 Score=104.74 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=125.3
Q ss_pred EEeeCCCCcEEEee--cCCCeEEEEeccCceEEEEecc--CceEEEEEcCCe-EEEEEecCCCeeeeEEEEeecCcEEEE
Q 016020 191 VEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKV 265 (396)
Q Consensus 191 VEFDd~NgkIlt~~--a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~IetG~~l~s 265 (396)
+.|.+ +|+.++.. ..+...++|+..+.+++.++.+ ..|..+.++|.- .+++.... +..+++|++.+++....
T Consensus 121 v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--d~~v~~~d~~~~~~~~~ 197 (325)
T d1pgua1 121 ISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD--DGSVVFYQGPPFKFSAS 197 (325)
T ss_dssp EEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET--TTEEEEEETTTBEEEEE
T ss_pred EEECC-CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeec--cccccccccccccccee
Confidence 56777 55554433 3477899999999999999985 789999999764 33444444 34678999999988887
Q ss_pred EEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEe---ecCeEEEEEEc-CeEEE
Q 016020 266 FYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL---YENQLFLTFRN-RTVAV 338 (396)
Q Consensus 266 ~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFl---y~~qLFLTfs~-gti~i 338 (396)
..-.-.+... ++|.+..++.|+..-.|+.|++||+.+++.+.+..+|..++...+|. +++++++|.+. |+|+|
T Consensus 198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277 (325)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence 6633344443 78988778889999999999999999999999999998888888876 68889999886 99999
Q ss_pred Eeccc-ceeeeecccc
Q 016020 339 WNFRG-ELVTSFEDHL 353 (396)
Q Consensus 339 Wd~~g-eL~t~fedh~ 353 (396)
||++. +++..+.-|-
T Consensus 278 wd~~~~~~~~~~~~~~ 293 (325)
T d1pgua1 278 WDVTTSKCVQKWTLDK 293 (325)
T ss_dssp EETTTTEEEEEEECCT
T ss_pred EECCCCCEEEEEEecC
Confidence 99985 7766655443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.25 E-value=1.5e-10 Score=98.74 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=125.2
Q ss_pred EEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeec--------
Q 016020 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED-------- 259 (396)
Q Consensus 191 VEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~Iet-------- 259 (396)
+.|++ +|+.|+..+.|+.+||||+++.+.+..+.+ ..|..++++|+-.++..... -.+++|++..
T Consensus 18 l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d---~~v~~~~~~~~~~~~~~~ 93 (299)
T d1nr0a2 18 LSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD---DHLKVVPAGGSGVDSSKA 93 (299)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETT---TEEEEECSSSSSSCTTSC
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccce---eeEEEeccCCcccccccc
Confidence 56777 899999999999999999999999988864 67999999987555444332 2334444322
Q ss_pred -----------------CcEEEE--------------EEeecc-cCCccchhhhhcceeeEeecCCeeeEEEcccceEEE
Q 016020 260 -----------------GTVLKV--------------FYHLLH-RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (396)
Q Consensus 260 -----------------G~~l~s--------------~~~~L~-~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~ 307 (396)
|+.+.. ...... ....+.|.+ .+.+|++..+|+.|.+||+.++++.+
T Consensus 94 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~ 172 (299)
T d1nr0a2 94 VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE 172 (299)
T ss_dssp CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 221110 001111 112255555 67889999999999999999998876
Q ss_pred e-cccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-cee---eeeccccccCC---CCCCCcEEEccCCcEEEEec
Q 016020 308 V-SRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELV---TSFEDHLLWHP---DCNTNNIYITSDQDLIISYC 377 (396)
Q Consensus 308 v-~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~---t~fedh~l~~~---~c~~n~~~it~~qd~ii~~~ 377 (396)
+ ...|...+.+..|.++++++++-+. |+|.+||... ... ..+..|.-+.. .++++++++|...|=-|.-+
T Consensus 173 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw 251 (299)
T d1nr0a2 173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251 (299)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEE
Confidence 4 4466788899999999998888776 8999999876 222 24555543322 26788888876655433333
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=1.3e-10 Score=105.53 Aligned_cols=158 Identities=10% Similarity=0.132 Sum_probs=120.7
Q ss_pred CCCcEEEeecCCCeEEEEeccCce--------------EEEEecc------CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 196 VNGKVLTYSAQDSIYKVFDLKNYT--------------MLYSISD------KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 196 ~NgkIlt~~a~d~~YrVwdlknYs--------------~lysIs~------~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
..+..++....|+..+|||+.... .+..... ..+..+.+||+-.| +.... +..++||
T Consensus 134 ~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~l-asgs~--Dg~i~iw 210 (393)
T d1sq9a_ 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI-ATGFN--NGTVQIS 210 (393)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEE-EEECT--TSEEEEE
T ss_pred ccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEE-EEEeC--CCcEEEE
Confidence 346778888899999999985321 1111111 34778999988754 44444 5678999
Q ss_pred EeecCcEEEEEE---eecccCCc---cchhhhhcceeeEeecCCe---eeEEEcccceEEEecc-------------ccc
Q 016020 256 SIEDGTVLKVFY---HLLHRNKK---VDFIEQFNEKLLVKQENEN---LQILDVRNAELMEVSR-------------TEF 313 (396)
Q Consensus 256 ~IetG~~l~s~~---~~L~~sk~---i~FiE~~~ekLLIKQed~~---L~I~Dv~~~ki~~v~~-------------t~~ 313 (396)
|+++|+.+..+. .+..|+.. ++|.+ .+..|++...|.. +++||+.+++++.... +|.
T Consensus 211 d~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~ 289 (393)
T d1sq9a_ 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289 (393)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred eecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeeccc
Confidence 999999998776 23355565 67877 8999999998874 8999999998887654 688
Q ss_pred CCCceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCC
Q 016020 314 MTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHP 357 (396)
Q Consensus 314 ~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~ 357 (396)
....+.-|.|++++++|-+. ++|++||.+. +++..|.+|--++.
T Consensus 290 ~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence 88899999999999999997 9999999875 89999999976554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=2e-10 Score=104.13 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=106.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--------CceEEEEEcCCeEEEEEecCC-CeeeeEEEEeecC
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKISPGIMLLIFNRSS-SHVPLKILSIEDG 260 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--------~~VqEIkiSpg~~Ll~~q~~~-~~iplkIl~IetG 260 (396)
-|+|.+ +| .++..+.|+++||||+++.+.++.+.. ..|..++|||+--+|+..... ...-++|||+++|
T Consensus 189 ~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g 266 (393)
T d1sq9a_ 189 SVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 266 (393)
T ss_dssp EEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence 488887 56 667788999999999999999998864 469999999876566666543 3456899999999
Q ss_pred cEEEEEE----------eecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCc----eEEEee
Q 016020 261 TVLKVFY----------HLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS----AFIFLY 323 (396)
Q Consensus 261 ~~l~s~~----------~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~Ps----AFiFly 323 (396)
+.+..+. .+.+|++. ++|.+ .+.+|+....|+.|++||+.+++++.+.++|....+ ..-|.+
T Consensus 267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 345 (393)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred eeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECC
Confidence 9998765 12346665 78887 889999999999999999999999999988866554 344666
Q ss_pred cCeE
Q 016020 324 ENQL 327 (396)
Q Consensus 324 ~~qL 327 (396)
++..
T Consensus 346 ~~~~ 349 (393)
T d1sq9a_ 346 HGDS 349 (393)
T ss_dssp TSCB
T ss_pred CCCE
Confidence 5554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.20 E-value=4.1e-09 Score=88.25 Aligned_cols=236 Identities=11% Similarity=0.137 Sum_probs=160.4
Q ss_pred EEEeeccc---hhhhhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhh
Q 016020 92 IEIVAARD---IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (396)
Q Consensus 92 ~EIv~a~d---ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i 168 (396)
..|....| +.++-...|...+||..|++.+..+..... ++++-+...+..+++.+ .++ -..+....
T Consensus 35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~--- 103 (301)
T d1l0qa2 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--PQGVAVSPDGKQVYVTN---MAS---STLSVIDT--- 103 (301)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEE---TTT---TEEEEEET---
T ss_pred eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc--ccccccccccccccccc---ccc---ceeeeccc---
Confidence 34444433 345666788999999999999988865443 57787887666666522 222 11111111
Q ss_pred hhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeE-EEEEecC
Q 016020 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIM-LLIFNRS 246 (396)
Q Consensus 169 ~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~-Ll~~q~~ 246 (396)
..+..+-.-..-..|..+.|++.+..++.....+....+|+..+.+.+..+.. ..+..+.++|+-. +++....
T Consensus 104 -----~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (301)
T d1l0qa2 104 -----TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (301)
T ss_dssp -----TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred -----ccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccc
Confidence 12222222233456778899986677778888899999999999999999987 6689999997544 4344333
Q ss_pred CCeeeeEEEEeecCcEEEEEEeecccCCc--cchhhhhcceeeEe---ecCCeeeEEEcccceEEEecccccCCCceEEE
Q 016020 247 SSHVPLKILSIEDGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVK---QENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (396)
Q Consensus 247 ~~~iplkIl~IetG~~l~s~~~~L~~sk~--i~FiE~~~ekLLIK---Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiF 321 (396)
...+.++....++....+. ..... +.|.. .+..+++. +.+..|.+||+.++++.....+. ..|.+.-|
T Consensus 179 --~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~ 251 (301)
T d1l0qa2 179 --SMSISVIDTVTNSVIDTVK---VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAV 251 (301)
T ss_dssp --TTEEEEEETTTTEEEEEEE---CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred --ccccccccccceeeeeccc---ccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEE
Confidence 3456666766666666554 22222 55665 77887765 34567999999999998765543 46899999
Q ss_pred eecCe-EEEEEEc-CeEEEEeccc-ceeeeec
Q 016020 322 LYENQ-LFLTFRN-RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 322 ly~~q-LFLTfs~-gti~iWd~~g-eL~t~fe 350 (396)
.++++ ||++-+. ++|.+||+.. +++.++.
T Consensus 252 spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 252 TPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99987 6788875 8999999865 7777664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.16 E-value=5.4e-10 Score=95.80 Aligned_cols=147 Identities=10% Similarity=0.134 Sum_probs=119.1
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecc
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~ 271 (396)
+|.+..|+.+|+.+ ++.+.|||+++...+-.-....|++++|||+--.|++......--+.||+.++|+..... .
T Consensus 9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~----~ 83 (360)
T d1k32a3 9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE----E 83 (360)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC----C
T ss_pred cccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee----C
Confidence 68988899999876 578999999887655433348999999999776666655444456999999998866432 3
Q ss_pred cCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEE-----------cCeEE
Q 016020 272 RNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----------NRTVA 337 (396)
Q Consensus 272 ~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs-----------~gti~ 337 (396)
+... +.|.+ .+.+|+....+..+.+||+.+++...+...+........|.+++++++... ++.+.
T Consensus 84 ~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 84 NLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 3333 78888 899999999999999999999999999999999999999999999877543 24689
Q ss_pred EEecccc
Q 016020 338 VWNFRGE 344 (396)
Q Consensus 338 iWd~~ge 344 (396)
+||..+.
T Consensus 163 v~d~~~~ 169 (360)
T d1k32a3 163 VYDMEGR 169 (360)
T ss_dssp EEETTTT
T ss_pred eeccccC
Confidence 9999984
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.4e-09 Score=92.39 Aligned_cols=146 Identities=12% Similarity=0.178 Sum_probs=110.6
Q ss_pred EeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc---CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEe
Q 016020 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (396)
Q Consensus 192 EFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~---~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~ 268 (396)
-+.+....+++....++.+++|++.+.+..+.+.. ..+..+.+||+-..|+.... ...++||++.+++.....-
T Consensus 125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~- 201 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV--MGKILLYDLQSREVKTSRW- 201 (287)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEECCS-
T ss_pred eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc--cccccceeecccccccccc-
Confidence 34443355666566667899999999998888764 67999999988766666655 4568999999998765421
Q ss_pred ecccCCc---cchh---------hhhcceeeEeecCCeeeEEEccc-ceEEEecccccCCCceEEEeecCeEEEEEEcCe
Q 016020 269 LLHRNKK---VDFI---------EQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRT 335 (396)
Q Consensus 269 ~L~~sk~---i~Fi---------E~~~ekLLIKQed~~L~I~Dv~~-~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gt 335 (396)
..|+.. +.|. ...+++|+....|+.|+|||+.+ +++.++..+|...+.+..|.++++|+-+-+||+
T Consensus 202 -~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~ 280 (287)
T d1pgua2 202 -AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADAC 280 (287)
T ss_dssp -CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSC
T ss_pred -cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCe
Confidence 133333 3333 23567899999999999999987 778899999999999999999987554445599
Q ss_pred EEEEec
Q 016020 336 VAVWNF 341 (396)
Q Consensus 336 i~iWd~ 341 (396)
|++||.
T Consensus 281 v~iW~i 286 (287)
T d1pgua2 281 IKRWNV 286 (287)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=2.3e-09 Score=88.95 Aligned_cols=151 Identities=7% Similarity=0.030 Sum_probs=107.6
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEE----ec-cCceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----IS-DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVL 263 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lys----Is-~~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l 263 (396)
-+.|++ +|+.|+..+.|+++||||+.+.+.... .. ...|.++.|+|. -.+++.... +..+++|+++++...
T Consensus 16 ~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~--d~~v~~w~~~~~~~~ 92 (342)
T d1yfqa_ 16 DIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV--QGEILKVDLIGSPSF 92 (342)
T ss_dssp EEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET--TSCEEEECSSSSSSE
T ss_pred EEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc--ccceeeeeccccccc
Confidence 478987 788898889999999999976543332 22 367999999863 445555554 467899999999888
Q ss_pred EEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceE----EEeccc--ccCCCceEEEeecCeEEEEEEc-CeE
Q 016020 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRT--EFMTPSAFIFLYENQLFLTFRN-RTV 336 (396)
Q Consensus 264 ~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki----~~v~~t--~~~~PsAFiFly~~qLFLTfs~-gti 336 (396)
......-.......+.......++....+..+++||+++++. ...... .......+.+...+..+++.+. |+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 172 (342)
T d1yfqa_ 93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172 (342)
T ss_dssp EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcE
Confidence 876533233333455555678889999999999999987432 222222 2334456667777777777776 999
Q ss_pred EEEeccc
Q 016020 337 AVWNFRG 343 (396)
Q Consensus 337 ~iWd~~g 343 (396)
.+||++.
T Consensus 173 ~~~~~~~ 179 (342)
T d1yfqa_ 173 QWFRLPL 179 (342)
T ss_dssp EEEESSC
T ss_pred EEEeccc
Confidence 9999977
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.95 E-value=2.5e-07 Score=77.17 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=166.8
Q ss_pred hhhccccceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee
Q 016020 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES 182 (396)
Q Consensus 103 ~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~ 182 (396)
+-..+|.-.++|..|++.+-.+.... -.+.|-++.....|.+ +..... +++..+.+ .+..+-.-
T Consensus 7 ~~~~~~~v~v~D~~t~~~~~~i~~g~--~p~~va~spdG~~l~v-~~~~~~-----~i~v~d~~--------t~~~~~~~ 70 (301)
T d1l0qa2 7 ANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYV-ANAHSN-----DVSIIDTA--------TNNVIATV 70 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEE-EEGGGT-----EEEEEETT--------TTEEEEEE
T ss_pred EECCCCEEEEEECCCCeEEEEEECCC--CceEEEEeCCCCEEEE-EECCCC-----EEEEEECC--------CCceeeee
Confidence 34567888899999999999887653 3678889876666643 332221 23333222 12222222
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecC
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG 260 (396)
..-..|.-+.|++.+..+++.+..+...++||+.+.+.+..+.. .....+.++|+ ..+++.... ...+.+++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~--~~~~~~~~~~~~ 148 (301)
T d1l0qa2 71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG--DKTVSVINTVTK 148 (301)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTT
T ss_pred eccccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeecc--ccceeeeecccc
Confidence 23346788999997777888888899999999999999999987 67788999964 444444444 456788999999
Q ss_pred cEEEEEEeecccCCccchhhhhcceeeEeec-CCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEc---Ce
Q 016020 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRN---RT 335 (396)
Q Consensus 261 ~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQe-d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~---gt 335 (396)
+.+..+... ..-..+.|.+ .+.++++... +..+.+|+....++....... ..|....|.+++.. |++..+ ++
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~ 225 (301)
T d1l0qa2 149 AVINTVSVG-RSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNT 225 (301)
T ss_dssp EEEEEEECC-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred ceeeecccC-CCceEEEeec-cccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeee
Confidence 999987732 1112356665 6677777765 467778888888887765544 45777888776654 566655 58
Q ss_pred EEEEeccc-ceeeeecccc-cc-CCCCCCCc-EEEccCC
Q 016020 336 VAVWNFRG-ELVTSFEDHL-LW-HPDCNTNN-IYITSDQ 370 (396)
Q Consensus 336 i~iWd~~g-eL~t~fedh~-l~-~~~c~~n~-~~it~~q 370 (396)
|.+||... +++..++-+. ++ .-..||++ +|+|...
T Consensus 226 v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~ 264 (301)
T d1l0qa2 226 VSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF 264 (301)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred eeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECC
Confidence 99999976 6777665432 22 11266765 5777543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=1.2e-07 Score=78.42 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=91.7
Q ss_pred CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 227 ~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
+.|..|+|||+--+|+.... +..++||++++++....+...+.|+.+ +.|.+..+..|+....|+.+++||+.++
T Consensus 12 d~I~~l~fsp~~~~L~s~s~--Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSW--DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEET--TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCEEEEEEeCCCCEEEEEEC--CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 77999999987766666655 567999999999888877766677776 6888866778999999999999999998
Q ss_pred eEEEecccccCCCceEE-EeecCeEEEEEEc-CeEEEEeccc
Q 016020 304 ELMEVSRTEFMTPSAFI-FLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 304 ki~~v~~t~~~~PsAFi-Fly~~qLFLTfs~-gti~iWd~~g 343 (396)
........+........ +.++...+++.+. +++.+||.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~ 131 (342)
T d1yfqa_ 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred cccccccccccccccccccccccccccccccccccceeeccc
Confidence 88876666655555444 4556777777776 8999999976
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.73 E-value=9.3e-08 Score=81.63 Aligned_cols=149 Identities=7% Similarity=0.017 Sum_probs=112.8
Q ss_pred eEEeeCCCCcEEEeecCC--CeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d--~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
.+.|.+ +|+.|++.+.+ ..++|||+++.+....... ..|..+.+||+--.++.... ...+.+|++++|+....+
T Consensus 47 ~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--~~~~~~~~~~~~~~~~~~ 123 (360)
T d1k32a3 47 YVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLETGKPTVIE 123 (360)
T ss_dssp EEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEE
T ss_pred EEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecc--ccccccccccccceeeee
Confidence 567888 88888776655 3799999999886643333 78999999988766666655 456889999999998877
Q ss_pred EeecccCCccchhhhhcceeeEe----------ecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-Ce
Q 016020 267 YHLLHRNKKVDFIEQFNEKLLVK----------QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RT 335 (396)
Q Consensus 267 ~~~L~~sk~i~FiE~~~ekLLIK----------Qed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gt 335 (396)
...-..-..+.|.+ .|++|+.. ..+..+++||+.+++...+... ........|.++++.+++.++ +.
T Consensus 124 ~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~s~~~~ 201 (360)
T d1k32a3 124 RSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE-NSHDYAPAFDADSKNLYYLSYRSL 201 (360)
T ss_dssp ECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS-SSBEEEEEECTTSCEEEEEESCCC
T ss_pred ecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeeccc-ccccccccccCCCCEEEEEeCCCc
Confidence 73323334488887 78888753 3556799999999998877554 445677889999998887776 89
Q ss_pred EEEEeccc
Q 016020 336 VAVWNFRG 343 (396)
Q Consensus 336 i~iWd~~g 343 (396)
+.+||...
T Consensus 202 ~~~~d~~~ 209 (360)
T d1k32a3 202 DPSPDRVV 209 (360)
T ss_dssp CCEECSSS
T ss_pred eEcccccc
Confidence 99998754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.70 E-value=2.1e-06 Score=72.04 Aligned_cols=237 Identities=10% Similarity=0.017 Sum_probs=143.4
Q ss_pred cchhhhhhccccceeeeccccceEEEecCCC-CceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 016020 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (396)
Q Consensus 98 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~-~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 176 (396)
+|++++-+..|...+||..|++.+=.|.... ..-+.+|-+......+++++ +.+ ..+ +.. ++.-|++-..
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---~~~-~~v--~v~---D~~t~~~~~~ 71 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS-ESL--VKI---DLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT-TEE--EEE---ETTTCCEEEE
T ss_pred CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE---CCC-CeE--EEE---ECCCCcEEEE
Confidence 4778888889999999999999988887543 34466777887666665532 111 112 222 2222222100
Q ss_pred Cccee-ecccCCCCeEEeeCCCCcEEEeec-----------CCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEE
Q 016020 177 FALFE-SESLKWPGFVEFDDVNGKVLTYSA-----------QDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIF 243 (396)
Q Consensus 177 ~~LF~-~~~l~~PgfVEFDd~NgkIlt~~a-----------~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~ 243 (396)
.++-+ ......|.-+.|++-...+.+.+. .+....+||+.+.+.+..++. ..+..+.+||+--.++.
T Consensus 72 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 151 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151 (337)
T ss_dssp EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE
T ss_pred EecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEE
Confidence 01111 122456777888884334433322 477899999999999888876 67888888865433333
Q ss_pred ecCCCeeeeEEEEeecCcEEEEEEee------------------------------------------------------
Q 016020 244 NRSSSHVPLKILSIEDGTVLKVFYHL------------------------------------------------------ 269 (396)
Q Consensus 244 q~~~~~iplkIl~IetG~~l~s~~~~------------------------------------------------------ 269 (396)
... ...+|+..+|+....+..-
T Consensus 152 ~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (337)
T d1pbyb_ 152 LGR----DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp ESS----SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EcC----CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence 222 1345666666555433210
Q ss_pred ---------cccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeE-EEEEEcCeE
Q 016020 270 ---------LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLTFRNRTV 336 (396)
Q Consensus 270 ---------L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qL-FLTfs~gti 336 (396)
.+.... +.+ ...+.+++.. ++.|++||+.+++++.... ....|.+..|.++++. |++-.+|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i 303 (337)
T d1pbyb_ 228 TGEMAMREVRIMDVFYFSTAV-NPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp TCCEEEEEEEECSSCEEEEEE-CTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred CCcEEEEEecCCCcceEEEEe-cccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 011111 111 1123333333 4689999999999988654 3467899999998875 555566999
Q ss_pred EEEeccc-ceeeeecc
Q 016020 337 AVWNFRG-ELVTSFED 351 (396)
Q Consensus 337 ~iWd~~g-eL~t~fed 351 (396)
.|||... +.+.++.-
T Consensus 304 ~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 304 AAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCcEEEEEEC
Confidence 9999986 77776643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.67 E-value=2.6e-07 Score=78.02 Aligned_cols=150 Identities=7% Similarity=0.003 Sum_probs=111.6
Q ss_pred CCcEEEeecCCCeEEEEeccCceEEEEec---cCceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecc-
Q 016020 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH- 271 (396)
Q Consensus 197 NgkIlt~~a~d~~YrVwdlknYs~lysIs---~~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~- 271 (396)
+|+-++....++.+.|||+++.+.+.++. +.....+.+|| |-.+++....++ .+.+||+++|+.+..+.....
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~--~v~~~d~~t~~~~~~~~~~~~~ 84 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--DIYGIDLDTCKNTFHANLSSVP 84 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEEEESCCST
T ss_pred CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCC--cEEEEeCccCeeeeeecccccc
Confidence 78999999999999999999999999876 35788999997 577778877654 467999999999998763211
Q ss_pred -----cCCccchhhhhcceeeEee------------cCCeeeEEEcccceEEEecccccC--CCceEEEeecCeEEEEEE
Q 016020 272 -----RNKKVDFIEQFNEKLLVKQ------------ENENLQILDVRNAELMEVSRTEFM--TPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 272 -----~sk~i~FiE~~~ekLLIKQ------------ed~~L~I~Dv~~~ki~~v~~t~~~--~PsAFiFly~~qLFLTfs 332 (396)
.-..+.|.+ .|.+|++.. .+..+.+||..+++...+...+.. ......+..++.+++ .
T Consensus 85 ~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 161 (346)
T d1jmxb_ 85 GEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV--A 161 (346)
T ss_dssp TEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE--E
T ss_pred cccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE--e
Confidence 122377777 888888764 578899999999887765544433 233444556666554 4
Q ss_pred cCeEEEEeccc-ceeeeecc
Q 016020 333 NRTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 333 ~gti~iWd~~g-eL~t~fed 351 (396)
++.+.+||... +.+..+.-
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~ 181 (346)
T d1jmxb_ 162 GPDIYKMDVKTGKYTVALPL 181 (346)
T ss_dssp SSSEEEECTTTCCEEEEECS
T ss_pred CCcceEEEccCCCEEEEEec
Confidence 67789999865 66666543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.63 E-value=5.4e-07 Score=84.76 Aligned_cols=175 Identities=9% Similarity=-0.017 Sum_probs=117.7
Q ss_pred EeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeec--ccCC---c
Q 016020 202 TYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL--HRNK---K 275 (396)
Q Consensus 202 t~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L--~~sk---~ 275 (396)
...+.++.++|||+++++.+-.|.. +.++.|++||+=..++.... .-.+.|||+.||+......... .+.. .
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~--dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR--DGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET--TSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC--CCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 5567799999999999999999965 78999999987665554433 4589999999988554332111 1111 1
Q ss_pred cchhhhhcceee-EeecCCeeeEEEcccceEEEecccccCCC-----------ceEEEeecCeE-EEEEEc-CeEEEEec
Q 016020 276 VDFIEQFNEKLL-VKQENENLQILDVRNAELMEVSRTEFMTP-----------SAFIFLYENQL-FLTFRN-RTVAVWNF 341 (396)
Q Consensus 276 i~FiE~~~ekLL-IKQed~~L~I~Dv~~~ki~~v~~t~~~~P-----------sAFiFly~~qL-FLTfs~-gti~iWd~ 341 (396)
+.|.+ +|.+|+ ....++.++|||..+++.+.+...+...+ .+..|.++++. +++.++ ++|.+||.
T Consensus 114 ~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 114 KMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred cccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 45655 889885 46679999999999999998766544332 35677887765 567776 89999998
Q ss_pred cc-c-e-eeeec--cccccCCCCCCCc-EEEccCCcEEEEeccC
Q 016020 342 RG-E-L-VTSFE--DHLLWHPDCNTNN-IYITSDQDLIISYCKA 379 (396)
Q Consensus 342 ~g-e-L-~t~fe--dh~l~~~~c~~n~-~~it~~qd~ii~~~~~ 379 (396)
.. + + ++.+. +..-.....|++. +|+++..+-.+.....
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence 75 3 2 23443 2222233467776 4555544444444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.62 E-value=1.4e-06 Score=73.22 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=110.5
Q ss_pred EEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEeec-----
Q 016020 201 LTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL----- 270 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L----- 270 (396)
+...+.|+.++|||+++.+.+.+|.. ..+..|++||+ -.|++.... .-.+.+||+.||+.+.++...-
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~--~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecCCCcccc
Confidence 44456789999999999999999963 56789999975 566565544 2468999999999999876211
Q ss_pred ccCCccchhhhhcceeeEeec------------CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEcCeEEE
Q 016020 271 HRNKKVDFIEQFNEKLLVKQE------------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAV 338 (396)
Q Consensus 271 ~~sk~i~FiE~~~ekLLIKQe------------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~gti~i 338 (396)
.....+.|.+ .+.++++... +..+.+||..+++........ ..|...-|.+++...++. ++.+.+
T Consensus 82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~-~~~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL-GRDLHV 158 (337)
T ss_dssp ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEE-cCCcce
Confidence 1122366776 7888877763 567889999999998876554 458899999999887764 577889
Q ss_pred Eeccc-ceeeeecccc
Q 016020 339 WNFRG-ELVTSFEDHL 353 (396)
Q Consensus 339 Wd~~g-eL~t~fedh~ 353 (396)
||... +++..+.-+.
T Consensus 159 ~d~~~~~~~~~~~~~~ 174 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EETTTTEEEEEECSTT
T ss_pred eeeecCcEEEEeecCC
Confidence 99887 5666655443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=7.8e-07 Score=75.06 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=110.9
Q ss_pred CcEEEeecCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCCccc
Q 016020 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (396)
Q Consensus 198 gkIlt~~a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk~i~ 277 (396)
+..++..+.|+.+|+|++.+.++ +..+..+.++++-.+++..... .+.+|+..+|+.+..+.+ ...-..
T Consensus 57 ~~~~~s~s~D~~v~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~ 125 (287)
T d1pgua2 57 AQEYSSISWDDTLKVNGITKHEF-----GSQPKVASANNDGFTAVLTNDD---DLLILQSFTGDIIKSVRL---NSPGSA 125 (287)
T ss_dssp TTCCEEEETTTEEEETTEEEEEC-----SSCEEEEEECSSSEEEEEETTS---EEEEEETTTCCEEEEEEC---SSCEEE
T ss_pred CCeEEEEeecccccccccccccc-----ccceeeeeeccCCceEEEeecc---cceeeeccceeeeeeccc---cceeee
Confidence 44566677899999999987542 2445667777766655554442 467899999999888762 222233
Q ss_pred hhhhhcceeeEeecC-CeeeEEEcccceEEE-ecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc-cee-eeeccc
Q 016020 278 FIEQFNEKLLVKQEN-ENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG-ELV-TSFEDH 352 (396)
Q Consensus 278 FiE~~~ekLLIKQed-~~L~I~Dv~~~ki~~-v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g-eL~-t~fedh 352 (396)
+. ..++.+++...+ ..+++||+.+.+... ....+...+.+.-|.++++++++-+. |.|.+||.+. +.+ ..+..|
T Consensus 126 ~~-~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h 204 (287)
T d1pgua2 126 VS-LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR 204 (287)
T ss_dssp EE-ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred ee-ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc
Confidence 33 356778887765 579999998866555 44556677889999999998888776 8999999987 443 356665
Q ss_pred c------ccCCC-------CCCCcEEEccCCc
Q 016020 353 L------LWHPD-------CNTNNIYITSDQD 371 (396)
Q Consensus 353 ~------l~~~~-------c~~n~~~it~~qd 371 (396)
. .|.|. +.++.+++|+..|
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D 236 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLD 236 (287)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred ccccceeeecccccccccccCCCCeeEeecCC
Confidence 3 35444 3455666665444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.54 E-value=8.4e-07 Score=81.45 Aligned_cols=114 Identities=11% Similarity=-0.023 Sum_probs=85.1
Q ss_pred EEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC----
Q 016020 200 VLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK---- 274 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk---- 274 (396)
.+.....|+.++|||+++++.+-+|.. +.+..|++||+=-.++.... +-.+++||+.||+.+...........
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~--d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR--DARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET--TSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC--CCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 345567899999999999999999976 88999999955444444333 34789999999997766553322211
Q ss_pred -ccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCC
Q 016020 275 -KVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTP 316 (396)
Q Consensus 275 -~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~P 316 (396)
.+.|.+ +|.+|++.. .+..+.+||..++++..+...+...+
T Consensus 112 ~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 154 (426)
T d1hzua2 112 SSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154 (426)
T ss_dssp ECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred EeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc
Confidence 267777 889886654 89999999999999988766555443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.51 E-value=1.7e-06 Score=81.23 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=110.5
Q ss_pred CCeEEeeCCCCcEEEeecCCCeEEEEeccCce--EEEEecc-CceEEEEEcC-----CeEEEEEecCCCeeeeEEEEeec
Q 016020 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD-KHVQEIKISP-----GIMLLIFNRSSSHVPLKILSIED 259 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs--~lysIs~-~~VqEIkiSp-----g~~Ll~~q~~~~~iplkIl~Iet 259 (396)
|.-+-|.+ .||-++..+.|+..++||+++.+ .+.+|.. .+-..+.+|+ |-.|++.... .-.++|||.++
T Consensus 64 ~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~--~~~v~i~d~~t 140 (432)
T d1qksa2 64 VHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW--PPQYVIMDGET 140 (432)
T ss_dssp EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE--TTEEEEEETTT
T ss_pred eeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC--CCeEEEEeCcc
Confidence 33445566 67777666678899999998866 6777775 5666777774 6666666554 35589999999
Q ss_pred CcEEEEEEeecc--------cCCc---cchhhhhcceeeE-eecCCeeeEEEcccceEEEecc-cccCCCceEEEeecCe
Q 016020 260 GTVLKVFYHLLH--------RNKK---VDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQ 326 (396)
Q Consensus 260 G~~l~s~~~~L~--------~sk~---i~FiE~~~ekLLI-KQed~~L~I~Dv~~~ki~~v~~-t~~~~PsAFiFly~~q 326 (396)
|+.+..+...-. +... |-|.+ .+.++++ ..++..+.+||..+.+..++.. .....|..+-|.++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~ 219 (432)
T d1qksa2 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 219 (432)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred ccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence 999998762111 1111 23343 4555544 5577889999998876555322 3446789999999999
Q ss_pred EEEEEEc--CeEEEEeccc-ceeeeecc
Q 016020 327 LFLTFRN--RTVAVWNFRG-ELVTSFED 351 (396)
Q Consensus 327 LFLTfs~--gti~iWd~~g-eL~t~fed 351 (396)
.+++.+. +.+.+||.+. ++++.++-
T Consensus 220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 220 YFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEeccccceEEEeecccceEEEEecc
Confidence 7777765 7999999998 56655543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=9e-06 Score=68.71 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=103.1
Q ss_pred EEEeecCCCeEEEEeccCce---EEEEecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEEEeecCcEEEEEEeecccCC
Q 016020 200 VLTYSAQDSIYKVFDLKNYT---MLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (396)
Q Consensus 200 Ilt~~a~d~~YrVwdlknYs---~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~IetG~~l~s~~~~L~~sk 274 (396)
+..+++.++.++|||+.+-. .+-.+.. ..++.|.+||+ -.|++.... .-.+.+|+|.+++....+........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~--d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEeeecccCC
Confidence 55788999999999997644 3333333 78999999977 455566654 34568999998766555442223333
Q ss_pred c---cchhhhhcceeeEee-cCCeeeEEEcccceEEEe--cccccCCCceEEEeecCeEEEEEEc--CeEEEEecccc
Q 016020 275 K---VDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFRGE 344 (396)
Q Consensus 275 ~---i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v--~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ge 344 (396)
. +.|.+ .|.+|++.. .+..+.+|+......... ...+...|.+..|.++++.+++... +.|.+|+....
T Consensus 84 ~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 84 SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence 3 77777 899999997 477899999887665543 3345567888999999998777775 68999998773
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.32 E-value=2.2e-05 Score=66.00 Aligned_cols=245 Identities=11% Similarity=0.026 Sum_probs=139.3
Q ss_pred EEEeeccc--h-hhhhhccccceeeeccccceEEEecCCCCce-----EEEEeeecCCCeEEEEEeEecCCCcee-----
Q 016020 92 IEIVAARD--I-VFALAHSGVCAAFSRETNRRICFLNVSPDEV-----IRSLFYNKNNDSLITVSVYASDNFSSL----- 158 (396)
Q Consensus 92 ~EIv~a~d--i-i~~L~~sG~c~af~~~t~~~ic~lN~s~~ev-----IrsifyN~~n~slI~vSv~~sd~~s~L----- 158 (396)
..+.+..| . .++-...|...+||..|++.+=.+....... +.++-++.....+.+.+-.....--..
T Consensus 43 ~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~ 122 (346)
T d1jmxb_ 43 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122 (346)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcc
Confidence 34555433 2 3444567888889988888877666554332 335666666555555432111000000
Q ss_pred eeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCC
Q 016020 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPG 237 (396)
Q Consensus 159 ~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg 237 (396)
..... +...|+......... .=....++.+.+ .|++++.+ +...+||+.+.+.+..+.. .....+.++|.
T Consensus 123 ~i~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (346)
T d1jmxb_ 123 RLEVF---STADGLEAKPVRTFP--MPRQVYLMRAAD-DGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPD 193 (346)
T ss_dssp EEEEE---EGGGGGGBCCSEEEE--CCSSCCCEEECT-TSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred eEEEE---ecccceeeeEEEeee--ccCceEEEEecC-CCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEecc
Confidence 11112 122222111111111 112233444544 56777654 4689999999999888865 33444444433
Q ss_pred eEE-EEEe-----------------------cCCCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEee
Q 016020 238 IML-LIFN-----------------------RSSSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQ 290 (396)
Q Consensus 238 ~~L-l~~q-----------------------~~~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQ 290 (396)
-.. +... .....-.+.+|++++|+....... ++... +.+.. .+.+++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 270 (346)
T d1jmxb_ 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--DLTELYFTGLRSP-KDPNQIYGV 270 (346)
T ss_dssp CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE--ECSSCEEEEEECS-SCTTEEEEE
T ss_pred ccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee--cccceeEEEEEeC-CCCEEEEec
Confidence 211 1111 111234578888888888776442 22222 34444 445666666
Q ss_pred cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEE-EcCeEEEEeccc-ceeeeec
Q 016020 291 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 291 ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTf-s~gti~iWd~~g-eL~t~fe 350 (396)
.| .+.+||+.+++++..... ...|.+..|+++++..++- .+|+|.|||.+. +.+.+++
T Consensus 271 ~~-~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 271 LN-RLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp ES-EEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CC-eEEEEECCCCcEEEEEcC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 54 699999999999886553 3479999999998765554 459999999996 7777665
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.29 E-value=0.00026 Score=61.23 Aligned_cols=228 Identities=7% Similarity=-0.054 Sum_probs=131.4
Q ss_pred hccccceeeeccccceEEEecCCCCceEE------EEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 016020 105 AHSGVCAAFSRETNRRICFLNVSPDEVIR------SLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (396)
Q Consensus 105 ~~sG~c~af~~~t~~~ic~lN~s~~evIr------sifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 178 (396)
...|...+||..|++.+..+......... .+.+...+..+.+.+... +. .+ ... +. ..+.
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~--~~--~~~---~~-----~~~~- 159 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GP--AV--GLV---VQ-----GGSS- 159 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-CC--ce--EEe---ec-----cCCe-
Confidence 34577889999999999988776655443 234444444444432211 11 00 000 00 0111
Q ss_pred ceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc------C--ceEEEEEcCCeEEEEEecCCCee
Q 016020 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K--HVQEIKISPGIMLLIFNRSSSHV 250 (396)
Q Consensus 179 LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~------~--~VqEIkiSpg~~Ll~~q~~~~~i 250 (396)
.......|.-+-|.+...........|+.+.+||..+....-.... . ....+..+++-.++..... -
T Consensus 160 --~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 234 (373)
T d2madh_ 160 --DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS---G 234 (373)
T ss_pred --EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCC---c
Confidence 1223344777778775555666778899999999999886655432 1 1223344454444333222 2
Q ss_pred eeEEEEeecCcEEEEEEee--------------------cc-cCCccchhhhhcceeeEeecCCeeeEEEcccceEEEec
Q 016020 251 PLKILSIEDGTVLKVFYHL--------------------LH-RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~~--------------------L~-~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~ 309 (396)
.+.+++..+++........ .. ..+.+-+....+..++....+..+.+||+.+++.+...
T Consensus 235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence 3344444444332211100 01 11112122223455566677888999999999988754
Q ss_pred ccccCCCceEEEeecCe--EEEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 310 RTEFMTPSAFIFLYENQ--LFLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 310 ~t~~~~PsAFiFly~~q--LFLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
. ....|.++-|.+|++ ||++-+. ++|.+||... +++.++..+
T Consensus 315 ~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~ 360 (373)
T d2madh_ 315 S-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL 360 (373)
T ss_pred c-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence 3 446789999999987 4556554 8999999985 899988755
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.12 E-value=0.00014 Score=62.97 Aligned_cols=139 Identities=9% Similarity=-0.045 Sum_probs=101.0
Q ss_pred CCeEEEEeccCceEEEEeccCceEEEEEcCC-eEEEEEecCC-------CeeeeEEEEeecCcEEEEEEee-------cc
Q 016020 207 DSIYKVFDLKNYTMLYSISDKHVQEIKISPG-IMLLIFNRSS-------SHVPLKILSIEDGTVLKVFYHL-------LH 271 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~~~VqEIkiSpg-~~Ll~~q~~~-------~~iplkIl~IetG~~l~s~~~~-------L~ 271 (396)
++...|||..+.+.+..|..-....+.+||+ ..|.+..... ..-.+.|||.++|+.+..+... ..
T Consensus 46 ~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 125 (373)
T d2madh_ 46 IIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred CceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEecc
Confidence 4568899999999999999877778999954 4554443322 2346899999999999876521 12
Q ss_pred cCCccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecCe-EEEEEEc-CeEEEEeccc-cee
Q 016020 272 RNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFRN-RTVAVWNFRG-ELV 346 (396)
Q Consensus 272 ~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q-LFLTfs~-gti~iWd~~g-eL~ 346 (396)
+...+.|.. .+..+++-. .+..+.+||..+.+.... ...|....|.++++ +|++.+. |++.+||..+ ++.
T Consensus 126 ~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 126 YSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 234477777 778776664 566889999999888744 44578889988875 5677766 9999999988 444
Q ss_pred eeec
Q 016020 347 TSFE 350 (396)
Q Consensus 347 t~fe 350 (396)
....
T Consensus 201 ~~~~ 204 (373)
T d2madh_ 201 AGLV 204 (373)
T ss_pred EEEe
Confidence 4443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.04 E-value=9.2e-06 Score=74.35 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=75.5
Q ss_pred EEEecCCCeeeeEEEEeecCcEEEEEEeecccC-CccchhhhhcceeeEeecCCeeeEEEcccceEEEecc-cccCCCce
Q 016020 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSA 318 (396)
Q Consensus 241 l~~q~~~~~iplkIl~IetG~~l~s~~~~L~~s-k~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~-t~~~~PsA 318 (396)
++.... .-.++|||+.||+.+..+.. +.. ..+.|.+ +|.+|++...|+.+++||+.+++...+.. .....|..
T Consensus 35 ~V~~~~--dg~v~vwD~~t~~~~~~l~~--g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 35 SVTLRD--AGQIALVDGDSKKIVKVIDT--GYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 109 (426)
T ss_dssp EEEETT--TTEEEEEETTTCSEEEEEEC--CSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred EEEEcC--CCEEEEEECCCCcEEEEEeC--CCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence 344444 57789999999999999883 221 2289998 99999999999999999999987554321 12223455
Q ss_pred EEE----eecCeE-EEEEEc-CeEEEEeccc-ceeeeeccc
Q 016020 319 FIF----LYENQL-FLTFRN-RTVAVWNFRG-ELVTSFEDH 352 (396)
Q Consensus 319 FiF----ly~~qL-FLTfs~-gti~iWd~~g-eL~t~fedh 352 (396)
..| +++++. +++-.. +++.+||... +++.....|
T Consensus 110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~ 150 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150 (426)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeecc
Confidence 555 457765 555544 8999999988 555555444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.60 E-value=0.008 Score=50.87 Aligned_cols=260 Identities=12% Similarity=0.047 Sum_probs=134.3
Q ss_pred ceeeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce---eecccC
Q 016020 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF---ESESLK 186 (396)
Q Consensus 110 c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF---~~~~l~ 186 (396)
-.++|..||+.+=.++..... ++-+......|.+++.+...-...-.=..+.+=++..|++-...++- ......
T Consensus 30 v~v~D~~tg~~~~~~~~g~~~---~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 106 (355)
T d2bbkh_ 30 QFVIDGEAGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106 (355)
T ss_dssp EEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred EEEEECCCCcEEEEEECCCCC---ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence 457888899888887765443 46677777777776644321110000001111122222221110110 112235
Q ss_pred CCCeEEeeCCCCcEEEee-cCCCeEEEEeccCceEEEEeccCceEEEEEcCCeEEEEEecCCCee--------eeEEEEe
Q 016020 187 WPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHV--------PLKILSI 257 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~-a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~~Ll~~q~~~~~i--------plkIl~I 257 (396)
.|.-+.|++-...+...+ ..+....+||+.+.+.+..+....-..+.-.++...+...+....+ .+..++.
T Consensus 107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~ 186 (355)
T d2bbkh_ 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186 (355)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred CCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence 688899999666665555 4467899999999998888775333222222221111222221111 1122222
Q ss_pred ecCcEEEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEeccccc------------CCCceEEEeecC
Q 016020 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF------------MTPSAFIFLYEN 325 (396)
Q Consensus 258 etG~~l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~------------~~PsAFiFly~~ 325 (396)
++++..... ....+.+.. .+..++.-..++.+.+||+.+++...+..... ..+..+-+.+++
T Consensus 187 ~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~ 260 (355)
T d2bbkh_ 187 EVFHPEDEF-----LINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260 (355)
T ss_dssp CCCSCTTSC-----BCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred ccccceecc-----eeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence 222211100 001123333 45566777888999999999987655322111 123446666665
Q ss_pred eE-EEEEEc----------CeEEEEeccc-ceeeeeccc-cccC-CCCCCCc--EEEccCCcEEEEecc
Q 016020 326 QL-FLTFRN----------RTVAVWNFRG-ELVTSFEDH-LLWH-PDCNTNN--IYITSDQDLIISYCK 378 (396)
Q Consensus 326 qL-FLTfs~----------gti~iWd~~g-eL~t~fedh-~l~~-~~c~~n~--~~it~~qd~ii~~~~ 378 (396)
.. |++..+ ++|.+||... +++..++-+ -++. -..+|++ +|++..+|=-|.-..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence 55 555544 3799999885 777766532 2221 2266776 677766653333333
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.00064 Score=58.69 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=123.0
Q ss_pred CcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 177 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 177 ~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
...+......+|--+.+|+ +|++...+...+.+++++-.+...+..... .....|.+.+.=.+++.....+. +..+
T Consensus 48 ~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~--~~~~ 124 (260)
T d1rwia_ 48 TTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNR--VVKL 124 (260)
T ss_dssp EEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTE--EEEE
T ss_pred EEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeecccccc--cccc
Confidence 3445555667899999998 899999999999999999888888777665 66889999765444555444321 2222
Q ss_pred EeecCcEEEEEE-eecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-
Q 016020 256 SIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN- 333 (396)
Q Consensus 256 ~IetG~~l~s~~-~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~- 333 (396)
+... +.+..+. --+.....|.+-. .+...+....+..|..+|...+.......+....|.+..+-+++.||++=+.
T Consensus 125 ~~~~-~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~ 202 (260)
T d1rwia_ 125 AAGS-KTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT 202 (260)
T ss_dssp CTTC-SSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred cccc-ceeeeeeecccCCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCC
Confidence 2222 1211111 0011112255544 4554455567778999998887777777888999999999999999998876
Q ss_pred CeEEEEecccceeeeeccccccCCC----CCCCcEEEc
Q 016020 334 RTVAVWNFRGELVTSFEDHLLWHPD----CNTNNIYIT 367 (396)
Q Consensus 334 gti~iWd~~geL~t~fedh~l~~~~----c~~n~~~it 367 (396)
+.|..++..++..+.+...-+..|. -+++++|||
T Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEE
T ss_pred CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEE
Confidence 7899899988765555333333332 235567776
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.47 E-value=0.0087 Score=50.65 Aligned_cols=152 Identities=10% Similarity=0.009 Sum_probs=100.1
Q ss_pred CCeEEeeCCCCcEEEee-----cCCCeEEEEeccCceEEEEeccCceEEEEEcCCe-EEEEEecCC-------CeeeeEE
Q 016020 188 PGFVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIFNRSS-------SHVPLKI 254 (396)
Q Consensus 188 PgfVEFDd~NgkIlt~~-----a~d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~-~Ll~~q~~~-------~~iplkI 254 (396)
|.-+..-..+|+.+... +.++.+.|||+++.+.+-++..-....+.|||+- .|++..... ..-.+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 44444444567766322 3467799999999999999987666679999654 344443221 2357899
Q ss_pred EEeecCcEEEEEEeecccC-------CccchhhhhcceeeEee--cCCeeeEEEcccceEEEecccccCCCceEEEeecC
Q 016020 255 LSIEDGTVLKVFYHLLHRN-------KKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (396)
Q Consensus 255 l~IetG~~l~s~~~~L~~s-------k~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~ 325 (396)
||.++|+.+..+.....+. .-+.|.+ .+..+++-. .+..+.+||..+++........ ....++....
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 158 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DCYHIFPTAP 158 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SEEEEEEEET
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecC---CcceEeecCC
Confidence 9999999999876322111 1257777 788888764 5678999999999988754432 2334555556
Q ss_pred eEEEEEEc-CeEEEEeccc
Q 016020 326 QLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 326 qLFLTfs~-gti~iWd~~g 343 (396)
..+++++. |+...|....
T Consensus 159 ~~~~~~~~dg~~~~v~~~~ 177 (355)
T d2bbkh_ 159 DTFFMHCRDGSLAKVAFGT 177 (355)
T ss_dssp TEEEEEETTSCEEEEECCS
T ss_pred cceEEEcCCCCEEEEEecC
Confidence 66666665 5555554433
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.028 Score=46.66 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=106.1
Q ss_pred CCCCeEEeeCCCCcEE-EeecCCCeEEEEeccCce----EEEEecc-CceEEEEEcCC-eEEEEEecCCCeeeeEEEEee
Q 016020 186 KWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYT----MLYSISD-KHVQEIKISPG-IMLLIFNRSSSHVPLKILSIE 258 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIl-t~~a~d~~YrVwdlknYs----~lysIs~-~~VqEIkiSpg-~~Ll~~q~~~~~iplkIl~Ie 258 (396)
..|-.+.|++ .|+.| +....|+.+++|++.+-. ..-..+. ..+..+.+||+ -.|++.... ...+.+|+.+
T Consensus 37 ~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~--~~~v~~~~~~ 113 (333)
T d1ri6a_ 37 GQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRLE 113 (333)
T ss_dssp SCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT--TTEEEEEEEE
T ss_pred CCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC--CCceeeeccc
Confidence 5678889999 78877 666679999999997653 3333333 56788999974 556555544 4557788888
Q ss_pred cCcEEEEEEeecccCCc--cchhhhhcceeeEee-cCCeeeEEEcccceEE------EecccccCCCceEEEeecCeEEE
Q 016020 259 DGTVLKVFYHLLHRNKK--VDFIEQFNEKLLVKQ-ENENLQILDVRNAELM------EVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~--i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~------~v~~t~~~~PsAFiFly~~qLFL 329 (396)
++.........-+.... +.|.+ .+.+++... .+..+.+|+..+.... .........|+...|.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred cccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence 88777766543333322 67777 666666555 6677999998774222 24455667888999999887755
Q ss_pred EEEc--CeEEEEecccc
Q 016020 330 TFRN--RTVAVWNFRGE 344 (396)
Q Consensus 330 Tfs~--gti~iWd~~ge 344 (396)
.... ++..+|+...+
T Consensus 193 ~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDP 209 (333)
T ss_dssp EEETTTTEEEEEESSCT
T ss_pred eeccccCceEEEeeccc
Confidence 5443 78888887663
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.23 E-value=0.00092 Score=61.04 Aligned_cols=91 Identities=9% Similarity=0.017 Sum_probs=70.3
Q ss_pred eeEEEEeecCcEEEEEEe--ecccC---CccchhhhhcceeeEeecC---------CeeeEEEcccceEEEecccccCCC
Q 016020 251 PLKILSIEDGTVLKVFYH--LLHRN---KKVDFIEQFNEKLLVKQEN---------ENLQILDVRNAELMEVSRTEFMTP 316 (396)
Q Consensus 251 plkIl~IetG~~l~s~~~--~L~~s---k~i~FiE~~~ekLLIKQed---------~~L~I~Dv~~~ki~~v~~t~~~~P 316 (396)
.+.+|++++|+....+.. +-.+. ..+.|.+ ++.+||+..++ +.+.|||+.++++..+ ..+....
T Consensus 37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l-~~~~~~~ 114 (470)
T d2bgra1 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-ERIPNNT 114 (470)
T ss_dssp CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCTTE
T ss_pred cEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCccccc-ccCCccc
Confidence 468999999998765541 00111 2477888 99999998764 4667999999998754 3445556
Q ss_pred ceEEEeecCeEEEEEEcCeEEEEeccc
Q 016020 317 SAFIFLYENQLFLTFRNRTVAVWNFRG 343 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~gti~iWd~~g 343 (396)
....|+|+++.+...+++.+-+|+..+
T Consensus 115 ~~~~~SPDG~~ia~~~~~~l~~~~~~~ 141 (470)
T d2bgra1 115 QWVTWSPVGHKLAYVWNNDIYVKIEPN 141 (470)
T ss_dssp EEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred cccccccCcceeeEeecccceEEECCC
Confidence 778899999999999999999999998
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.16 E-value=0.013 Score=50.62 Aligned_cols=179 Identities=12% Similarity=0.240 Sum_probs=111.8
Q ss_pred cccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--------CceEEEEEc--CCeEEEEEecCCCeeee
Q 016020 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KHVQEIKIS--PGIMLLIFNRSSSHVPL 252 (396)
Q Consensus 183 ~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--------~~VqEIkiS--pg~~Ll~~q~~~~~ipl 252 (396)
..|.+|.-|-+|+ +|+|...+.....+++||.. .+.+.++.. ..-..+.+. .+..++....... -+
T Consensus 20 g~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~i 95 (279)
T d1q7fa_ 20 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH--QI 95 (279)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC--EE
T ss_pred CeECCccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcc--cc
Confidence 3588999999998 89999999999999999965 677777743 122334433 3344433333322 23
Q ss_pred EEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceEEEe-cccccCCCceEEEeecCeEE
Q 016020 253 KILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLF 328 (396)
Q Consensus 253 kIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v-~~t~~~~PsAFiFly~~qLF 328 (396)
..++ .+|+....+.. ..... +.+-. .+..++....+..+.++|-...-+..+ ..+++..|....+-.++++|
T Consensus 96 ~~~~-~~g~~~~~~~~--~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~ 171 (279)
T d1q7fa_ 96 QIYN-QYGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIF 171 (279)
T ss_dssp EEEC-TTSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred cccc-ccccceeecCC--Ccccccceecccc-CCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEE
Confidence 3343 35766665531 11111 22211 344444445566677777544333333 45667778888888889999
Q ss_pred EEEEc-CeEEEEecccceeeeec-cccccCCC----CCCCcEEEccC
Q 016020 329 LTFRN-RTVAVWNFRGELVTSFE-DHLLWHPD----CNTNNIYITSD 369 (396)
Q Consensus 329 LTfs~-gti~iWd~~geL~t~fe-dh~l~~~~----c~~n~~~it~~ 369 (396)
++-.. +.|.+||.+|+.+.+|- .-.+..|. .+++++||+..
T Consensus 172 v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~ 218 (279)
T d1q7fa_ 172 ISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN 218 (279)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred eeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEEC
Confidence 88776 89999999999777663 22344444 46788999854
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.08 E-value=0.0015 Score=59.63 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=101.1
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-------CceEEEE
Q 016020 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------KHVQEIK 233 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-------~~VqEIk 233 (396)
+..++|++..|++.... ..+.|- + .|..+. ..|+.+.+||+++.+..--++. ..|.+++
T Consensus 3 ~~~t~~~~~~~~~~~~~-----~~~~W~------~-d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~ 68 (470)
T d2bgra1 3 KTYTLTDYLKNTYRLKL-----YSLRWI------S-DHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (470)
T ss_dssp EECCHHHHHHTCSCCCC-----CCCEEC------S-SSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEE
T ss_pred CcEEhHHhhCCceeccc-----cCCEeC------C-CCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeE
Confidence 35678888888864322 223332 1 245554 3477899999999987655554 3589999
Q ss_pred EcCCeEEEEEecC-------CCeeeeEEEEeecCcEEEEEEeecccCC---ccchhhhhcceeeEeecCCeeeEEEcccc
Q 016020 234 ISPGIMLLIFNRS-------SSHVPLKILSIEDGTVLKVFYHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRNA 303 (396)
Q Consensus 234 iSpg~~Ll~~q~~-------~~~iplkIl~IetG~~l~s~~~~L~~sk---~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ 303 (396)
|||+---+++... ...--+.|||+++|+... +. .+.. .+.|.+ .|++|+.- .+.+|-++++.++
T Consensus 69 ~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~---~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g 142 (470)
T d2bgra1 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE---RIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNL 142 (470)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS---CCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTS
T ss_pred ECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-cc---cCCcccccccccc-CcceeeEe-ecccceEEECCCC
Confidence 9986654444432 234567899999997532 22 2222 277888 99999985 5678999999999
Q ss_pred eEEEeccc------------------ccCCCceEEEeecCeEEEEEE
Q 016020 304 ELMEVSRT------------------EFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 304 ki~~v~~t------------------~~~~PsAFiFly~~qLFLTfs 332 (396)
+...+... +....+++-|+|+++...+.+
T Consensus 143 ~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 88775322 334567788999998755544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.99 E-value=0.012 Score=51.63 Aligned_cols=133 Identities=8% Similarity=-0.146 Sum_probs=93.9
Q ss_pred CCeEEEEeccCceEEEEeccCceEEEEEcCCe-EEEEEecC-------CCeeeeEEEEeecCcEEEEEEeecc-------
Q 016020 207 DSIYKVFDLKNYTMLYSISDKHVQEIKISPGI-MLLIFNRS-------SSHVPLKILSIEDGTVLKVFYHLLH------- 271 (396)
Q Consensus 207 d~~YrVwdlknYs~lysIs~~~VqEIkiSpg~-~Ll~~q~~-------~~~iplkIl~IetG~~l~s~~~~L~------- 271 (396)
+....|||..+.+.+=.+..-....+.+||+- .+.+.... ..+-.+.+||..+|+.+..+....+
T Consensus 45 ~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~ 124 (368)
T d1mdah_ 45 TTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp SEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred cceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence 33455669999998888887666789999754 44443311 1245699999999999998763111
Q ss_pred cCCccchhhhhcceeeEee-cCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEeccc
Q 016020 272 RNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFRG 343 (396)
Q Consensus 272 ~sk~i~FiE~~~ekLLIKQ-ed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~~g 343 (396)
.-..+.|.+ +|.+|++-. .++.+.+||+.+++........... -++-..+..|++++- |++..|+...
T Consensus 125 ~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~ 194 (368)
T d1mdah_ 125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCCCceEEEEcCCCCEEEEEecC
Confidence 112378888 999999987 4689999999999998865543222 233455667777765 8888888776
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.98 E-value=0.029 Score=49.07 Aligned_cols=234 Identities=6% Similarity=-0.100 Sum_probs=121.7
Q ss_pred eeeccccceEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc---ceeecccCCC
Q 016020 112 AFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA---LFESESLKWP 188 (396)
Q Consensus 112 af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~---LF~~~~l~~P 188 (396)
++|..|++.+=.+...-.-. +-+......|.++|.+.+.-.+.=....+.+=+...|++-..-+ -.......+|
T Consensus 50 ~~d~~~~~~~~~~~~~~~~~---~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p 126 (368)
T d1mdah_ 50 VSCAGCGVTLGHSLGAFLSL---AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEETTTTEEEEEEEECTTCE---EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred EEeCCCCcEEEEEeCCCCCc---ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCc
Confidence 34777776666554333221 22344555555555443332222222222222222222211000 0011234578
Q ss_pred CeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEeccCc---------eEEEEEc-CCeEEEEEecCCCe---------
Q 016020 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKH---------VQEIKIS-PGIMLLIFNRSSSH--------- 249 (396)
Q Consensus 189 gfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~~~---------VqEIkiS-pg~~Ll~~q~~~~~--------- 249 (396)
.-+.|.+-...++.++..++.+.+||+.+.+.+-.++... ..-+.+| +|.++.+.......
T Consensus 127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~ 206 (368)
T d1mdah_ 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence 8899999444565666778999999999999887775421 1223333 33333333221110
Q ss_pred ------------------------eeeEEEEeecCcEEEEEEeeccc------------CCccchhhhhcceeeEeec--
Q 016020 250 ------------------------VPLKILSIEDGTVLKVFYHLLHR------------NKKVDFIEQFNEKLLVKQE-- 291 (396)
Q Consensus 250 ------------------------iplkIl~IetG~~l~s~~~~L~~------------sk~i~FiE~~~ekLLIKQe-- 291 (396)
-.+.+.+..+++........... ...+.+.+ .+..+++--.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~ 285 (368)
T d1mdah_ 207 TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEH 285 (368)
T ss_dssp CTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEEC
T ss_pred ccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCC
Confidence 11233333333333211100000 00012111 3444444321
Q ss_pred -------CCeeeEEEcccceEEEecccccCCCceEEEeecCe--EEEEEEc-CeEEEEeccc-ceeeeec
Q 016020 292 -------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ--LFLTFRN-RTVAVWNFRG-ELVTSFE 350 (396)
Q Consensus 292 -------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~q--LFLTfs~-gti~iWd~~g-eL~t~fe 350 (396)
+..|.+||..+++........ -.|.+.-|.++++ ||++-+. ++|.+||... +.+.+++
T Consensus 286 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 286 SRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 135889999999988765544 4688899999986 5777665 8999999865 7887776
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.60 E-value=0.046 Score=47.08 Aligned_cols=156 Identities=15% Similarity=0.244 Sum_probs=108.3
Q ss_pred eeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEecCCCeeeeEEE
Q 016020 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (396)
Q Consensus 180 F~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q~~~~~iplkIl 255 (396)
|....+.+|.-+.+|. +|++...+...+.+.+++. +.+.+.++.. .....|.+.++-.+++.....+ -++++
T Consensus 108 ~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~--~V~~~ 183 (279)
T d1q7fa_ 108 FGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH--CVKVF 183 (279)
T ss_dssp ECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT--EEEEE
T ss_pred cCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccc--ceeee
Confidence 3445678899999997 8999999988898999985 5678888743 5677888887656666665543 45567
Q ss_pred EeecCcEEEEEEee--cccCCccchhhhhcceeeEee--cCCeeeEEEcccceEEEec--ccccCCCceEEEeecCeEEE
Q 016020 256 SIEDGTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 256 ~IetG~~l~s~~~~--L~~sk~i~FiE~~~ekLLIKQ--ed~~L~I~Dv~~~ki~~v~--~t~~~~PsAFiFly~~qLFL 329 (396)
+ .+|+.+.++-.. +.+-.-|.+-. .|+ |+|.. .+..|+++| .+++++.+- ......|.+..+-++++||+
T Consensus 184 d-~~G~~~~~~g~~g~~~~P~giavD~-~G~-i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V 259 (279)
T d1q7fa_ 184 N-YEGQYLRQIGGEGITNYPIGVGINS-NGE-ILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL 259 (279)
T ss_dssp E-TTCCEEEEESCTTTSCSEEEEEECT-TCC-EEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred e-cCCceeeeecccccccCCccccccc-CCe-EEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE
Confidence 7 478877766410 11111144433 454 77664 345699998 578876543 33344688888999999999
Q ss_pred EEEcCeEEEEeccc
Q 016020 330 TFRNRTVAVWNFRG 343 (396)
Q Consensus 330 Tfs~gti~iWd~~g 343 (396)
+=.++.|.+|.++-
T Consensus 260 ~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 260 ASKDYRLYIYRYVQ 273 (279)
T ss_dssp EETTTEEEEEECSC
T ss_pred EeCCCeEEEEEeee
Confidence 88789999998864
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=95.34 E-value=0.38 Score=43.10 Aligned_cols=177 Identities=11% Similarity=0.070 Sum_probs=103.5
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEecc-CceEE--EEec----cCceEEEEEcCCe-EEEEEecCCCeeeeEEEEe
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTML--YSIS----DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSI 257 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlk-nYs~l--ysIs----~~~VqEIkiSpg~-~Ll~~q~~~~~iplkIl~I 257 (396)
.||--+-|++.+..+.+.+.....+.+|+.. +.+.. -.+. +....-|.++|+- .+.+.....+ .+.+|++
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~--~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN--RICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCC--EEEEEEe
Confidence 3677899999555577776666667777643 33322 1111 2566778888654 3435555533 4567888
Q ss_pred ecCcEEEEEE---eec-cc---------------CCccchhhhhcceeeEeecCC------eeeEEEccc-ceEE-----
Q 016020 258 EDGTVLKVFY---HLL-HR---------------NKKVDFIEQFNEKLLVKQENE------NLQILDVRN-AELM----- 306 (396)
Q Consensus 258 etG~~l~s~~---~~L-~~---------------sk~i~FiE~~~ekLLIKQed~------~L~I~Dv~~-~ki~----- 306 (396)
.+++.+.... ..+ .. ...+.+.+ .|.+|++.-.+. .|-+|++.. +.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~ 301 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence 7766443221 111 10 11256655 899999875432 266677654 2222
Q ss_pred EecccccCCCceEEEee-cCe-EEEEEEc-CeEEEEecccc-eeeeeccccccCCCCCCCcEEE
Q 016020 307 EVSRTEFMTPSAFIFLY-ENQ-LFLTFRN-RTVAVWNFRGE-LVTSFEDHLLWHPDCNTNNIYI 366 (396)
Q Consensus 307 ~v~~t~~~~PsAFiFly-~~q-LFLTfs~-gti~iWd~~ge-L~t~fedh~l~~~~c~~n~~~i 366 (396)
....+...+|.+|-|.+ +++ |+++=.. ++|.+|+++++ +....+-++ ..|.|+-.-+++
T Consensus 302 ~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~v-p~p~~~~~~~w~ 364 (365)
T d1jofa_ 302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRI-PEPGFGMNAIWY 364 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEEC-CSTTEEEEEEEE
T ss_pred eEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEEC-CCCCCCeEEEec
Confidence 22345667899999997 455 5666444 99999999986 333333333 356676555543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.17 E-value=0.48 Score=41.42 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=100.0
Q ss_pred CCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEE--EEecc----CceEEEEEcCCeEEEEEecC--CCeeeeEEEEee
Q 016020 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISD----KHVQEIKISPGIMLLIFNRS--SSHVPLKILSIE 258 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~l--ysIs~----~~VqEIkiSpg~~Ll~~q~~--~~~iplkIl~Ie 258 (396)
.|+.+-+++ +|.++..+ ++ -+-++|..+.+.- ....+ ..+-++++.|.=.+.+.... ...-.-.++.+.
T Consensus 60 ~~~~i~~~~-dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 60 MGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp CEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcEEEEEec-CCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence 467777777 56666543 23 4667888877632 22211 34667777744333333222 122356788888
Q ss_pred cCcEEEEEEeecccCCccchhhhhcceee-EeecCCeeeEEEccc------c--eEEEecccccCCCceEEEeecCeEEE
Q 016020 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRN------A--ELMEVSRTEFMTPSAFIFLYENQLFL 329 (396)
Q Consensus 259 tG~~l~s~~~~L~~sk~i~FiE~~~ekLL-IKQed~~L~I~Dv~~------~--ki~~v~~t~~~~PsAFiFly~~qLFL 329 (396)
+|+....+. -+...+-+.|.+ .+..|+ +......|..||+-. + +......+....|....+-.+++|++
T Consensus 137 ~g~~~~~~~-~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 137 KGKVTKLFA-DISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp TTEEEEEEE-EESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred CCcEEEEee-ccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence 997665544 345556688877 555554 445677788887632 1 22222334455688888888999999
Q ss_pred EEEc-CeEEEEecccceeeeec
Q 016020 330 TFRN-RTVAVWNFRGELVTSFE 350 (396)
Q Consensus 330 Tfs~-gti~iWd~~geL~t~fe 350 (396)
+.-. +.|..||-+|+++..++
T Consensus 215 a~~~~g~V~~~dp~G~~~~~i~ 236 (295)
T d2ghsa1 215 ARWGEGAVDRYDTDGNHIARYE 236 (295)
T ss_dssp EEETTTEEEEECTTCCEEEEEE
T ss_pred eeeCCCceEEecCCCcEeeEec
Confidence 9876 78999999999888774
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=94.85 E-value=0.27 Score=47.39 Aligned_cols=157 Identities=12% Similarity=0.076 Sum_probs=101.0
Q ss_pred ecccCCCCeEEeeC-CCCcEE-EeecCCCeEEEEeccCceEEE--Eec-cCceEEEEEcC-CeEEEEEecCCCeeee---
Q 016020 182 SESLKWPGFVEFDD-VNGKVL-TYSAQDSIYKVFDLKNYTMLY--SIS-DKHVQEIKISP-GIMLLIFNRSSSHVPL--- 252 (396)
Q Consensus 182 ~~~l~~PgfVEFDd-~NgkIl-t~~a~d~~YrVwdlknYs~ly--sIs-~~~VqEIkiSp-g~~Ll~~q~~~~~ipl--- 252 (396)
..-.-||...+.|- ..||.| +.+..++.+.|||+.+++..- +|. ....+-+++|| |-.+.+.......+|+
T Consensus 66 ~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 66 NGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145 (441)
T ss_dssp CCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred cCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence 45667788776542 248876 777889999999999998666 444 48899999994 6665555555445555
Q ss_pred -------------EEEEeecCcEEEEEEeecccC-CccchhhhhcceeeEeec---------------------------
Q 016020 253 -------------KILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQE--------------------------- 291 (396)
Q Consensus 253 -------------kIl~IetG~~l~s~~~~L~~s-k~i~FiE~~~ekLLIKQe--------------------------- 291 (396)
..+|.++.+...... +..+ ..+.|.+ .|.++++-..
T Consensus 146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~--v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~ 222 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAETMDVAWQVI--VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI 222 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTTCSEEEEEE--ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred ccccccccccceEEeecCccceeeEEEe--cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence 556666666554332 1111 1144444 4444444442
Q ss_pred --------------CCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc--CeEEEEecc
Q 016020 292 --------------NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--RTVAVWNFR 342 (396)
Q Consensus 292 --------------d~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~--gti~iWd~~ 342 (396)
++.+.|++..+.+.+..-++. ..|...-+.++++.+++.-. ++|.+||++
T Consensus 223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 334555555555666544443 56999999999996655543 899999974
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.23 E-value=0.31 Score=41.16 Aligned_cols=180 Identities=11% Similarity=0.071 Sum_probs=101.1
Q ss_pred CCCCeEEeeCCCCcE-EEeecCCCeEEEEecc-CceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecCcE
Q 016020 186 KWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLK-NYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (396)
Q Consensus 186 ~~PgfVEFDd~NgkI-lt~~a~d~~YrVwdlk-nYs~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG~~ 262 (396)
..|-=|-+|. +|.+ ++.....+....++.. .+.......+ ..-+.|.+++.=.+.+...... .+++++-.+++.
T Consensus 14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~--~i~~~~~~~~~~ 90 (260)
T d1rwia_ 14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNR--VVTLAAGSNNQT 90 (260)
T ss_dssp CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTE--EEEECTTCSCCE
T ss_pred CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeec--eeeeeeecccee
Confidence 3577778886 5664 5444554544444333 3333333333 3445677765434555555533 244555444444
Q ss_pred EEEEEeecccCCccchhhhhcceeeEeecCCeeeEEEcccceEEEecccccCCCceEEEeecCeEEEEEEc-CeEEEEec
Q 016020 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNF 341 (396)
Q Consensus 263 l~s~~~~L~~sk~i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki~~v~~t~~~~PsAFiFly~~qLFLTfs~-gti~iWd~ 341 (396)
+..+.- +..-..|.+-. .+........+..+..++...........+.+..|.+..+.+++.+|++-.. +.|..+|.
T Consensus 91 ~~~~~~-~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp ECCCCS-CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeeee-eeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence 332220 01101133222 3433333445556777777777766677778889999999999999998666 78999999
Q ss_pred ccceeeeeccccccCCC----CCCCcEEEccCC
Q 016020 342 RGELVTSFEDHLLWHPD----CNTNNIYITSDQ 370 (396)
Q Consensus 342 ~geL~t~fedh~l~~~~----c~~n~~~it~~q 370 (396)
+|.....+..-.+..|. -+++++|++...
T Consensus 169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp TTCCEEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred ccceeeeeeccccCCCccceeeeeeeeeeeecC
Confidence 99644444333334443 246788887654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=90.76 E-value=3.4 Score=36.60 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=79.6
Q ss_pred CCCCeEEeeCCCCcEE-EeecCCCeEEEEeccCce--EEEEecc-------------------CceEEEEEcC-CeEEEE
Q 016020 186 KWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYT--MLYSISD-------------------KHVQEIKISP-GIMLLI 242 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIl-t~~a~d~~YrVwdlknYs--~lysIs~-------------------~~VqEIkiSp-g~~Ll~ 242 (396)
..|-.+-|++ +|+.+ .....++.+.|||+.+-+ .+..+.. ....+|.+|| |-.|.+
T Consensus 193 ~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 193 DHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CceEEEEECC-CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 4577799998 66644 667779999999986554 3333221 1356899995 556667
Q ss_pred EecCCC---eeeeEEEEeec-CcEEEEEEeec-----ccCCccchhhhhcceeeEe-ecCCeeeEEEcccceEEEecc
Q 016020 243 FNRSSS---HVPLKILSIED-GTVLKVFYHLL-----HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR 310 (396)
Q Consensus 243 ~q~~~~---~iplkIl~Iet-G~~l~s~~~~L-----~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v~~ 310 (396)
..+.++ ...+.+|.+.+ |.........- .+-.-+.|.+..|++|++. |++..|.||++....+..+..
T Consensus 272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~ 349 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVAR 349 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEE
T ss_pred EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEE
Confidence 665443 35577777755 44333222110 1223377777789999888 788899999987766554433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.48 E-value=4.8 Score=34.59 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=108.9
Q ss_pred eEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc--CceEEEEEcC-CeEEEEEecCCCeeeeEEEEeecCcEEEEE
Q 016020 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (396)
Q Consensus 190 fVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~--~~VqEIkiSp-g~~Ll~~q~~~~~iplkIl~IetG~~l~s~ 266 (396)
=++||..++++--.+.+++.++..++.+-+...-+.. ..+..|.+-. +=.|....... -.+...++. |+....+
T Consensus 40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~--~~I~~~~~d-g~~~~~l 116 (263)
T d1npea_ 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQL--DRIEVAKMD-GTQRRVL 116 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEE
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCC--CEEEEEecC-CceEEEE
Confidence 3789999999988888999999999977665555554 5678888852 33333444332 234444543 3332222
Q ss_pred E-eecccCCccchhhhhcceeeEeecCC-e--eeEEEcccceEEEecccccCCCceEEEee-cCeEEEEEEc-CeEEEEe
Q 016020 267 Y-HLLHRNKKVDFIEQFNEKLLVKQENE-N--LQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFRN-RTVAVWN 340 (396)
Q Consensus 267 ~-~~L~~sk~i~FiE~~~ekLLIKQed~-~--L~I~Dv~~~ki~~v~~t~~~~PsAFiFly-~~qLFLTfs~-gti~iWd 340 (396)
. .-|.+-..+..-+ .+.+|+.-+.+. . |.-.++-......+..+....|.+.-+-+ ++.||++=+. ++|+.-|
T Consensus 117 ~~~~l~~p~~l~vdp-~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~ 195 (263)
T d1npea_ 117 FDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (263)
T ss_dssp ECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecccccCCcEEEEec-ccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence 1 1111112233222 577788776553 3 44446655544444445567788887754 5667777444 8999999
Q ss_pred cccc-eeeeecc-ccccCCCCCCCcEEEccCCcEEEEeccCC
Q 016020 341 FRGE-LVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAE 380 (396)
Q Consensus 341 ~~ge-L~t~fed-h~l~~~~c~~n~~~it~~qd~ii~~~~~~ 380 (396)
.+|. ..+-+.+ +.|+...=..+.+|+|....-=|-.+...
T Consensus 196 ~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 196 PAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp TTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred CCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECC
Confidence 9994 3333332 22222223467899996554445555443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=89.23 E-value=2.7 Score=40.20 Aligned_cols=126 Identities=9% Similarity=0.028 Sum_probs=81.3
Q ss_pred EEeecCCCeEEEEeccCceEEEEecc--------------------------------CceEEEEEc-CCeEEEEEecCC
Q 016020 201 LTYSAQDSIYKVFDLKNYTMLYSISD--------------------------------KHVQEIKIS-PGIMLLIFNRSS 247 (396)
Q Consensus 201 lt~~a~d~~YrVwdlknYs~lysIs~--------------------------------~~VqEIkiS-pg~~Ll~~q~~~ 247 (396)
..+..+++.++|||+..+..+..|.- -+..+...+ +|-.|++....+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 44567899999999999998888843 112222233 466777888776
Q ss_pred CeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeec--C-----------------CeeeEEEcccceE
Q 016020 248 SHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQE--N-----------------ENLQILDVRNAEL 305 (396)
Q Consensus 248 ~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQe--d-----------------~~L~I~Dv~~~ki 305 (396)
+. +.++|+.|++....+.. +..+. +.|.+ .+..+++--. + ..+..+|..+.+.
T Consensus 94 ~r--VavIDl~t~k~~~ii~i--P~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 94 TR--VARIRLDIMKTDKITHI--PNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp TE--EEEEETTTTEEEEEEEC--TTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred CE--EEEEECCCCcEeeEEec--CCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence 65 66899999998886652 22222 56655 6665554321 1 2346788888777
Q ss_pred EEecccccCCCceEEEeecCeEEEEEE
Q 016020 306 MEVSRTEFMTPSAFIFLYENQLFLTFR 332 (396)
Q Consensus 306 ~~v~~t~~~~PsAFiFly~~qLFLTfs 332 (396)
...-+.. -.|...-|.|+++..++-+
T Consensus 169 ~~qI~v~-~~p~~v~~spdGk~a~vt~ 194 (441)
T d1qnia2 169 AWQVIVD-GNLDNTDADYTGKYATSTC 194 (441)
T ss_dssp EEEEEES-SCCCCEEECSSSSEEEEEE
T ss_pred eEEEecC-CCccceEECCCCCEEEEEe
Confidence 6532222 3588888888888644433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=89.23 E-value=6.3 Score=34.20 Aligned_cols=183 Identities=12% Similarity=0.080 Sum_probs=106.9
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-C-----ceEEEEEcCCeEEEEEecCCCe----------
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----HVQEIKISPGIMLLIFNRSSSH---------- 249 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-~-----~VqEIkiSpg~~Ll~~q~~~~~---------- 249 (396)
.+|.-+-||+-.+.+.+.+... .+.++|..+......... + ...++.+.+.=.|.+..+....
T Consensus 71 g~P~Gl~~~~dg~~l~vad~~~-~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~ 149 (314)
T d1pjxa_ 71 GIPAGCQCDRDANQLFVADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTT-EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CcceeEEEeCCCCEEEEEECCC-eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence 3587889998444566666544 466778776653332221 1 2467888864445554432110
Q ss_pred -eeeEEEEee-cCcEEEEEEeecccCCccchhhhh---cceeeEe-ecCCeeeEEEcccc-eEE------EecccccCCC
Q 016020 250 -VPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQF---NEKLLVK-QENENLQILDVRNA-ELM------EVSRTEFMTP 316 (396)
Q Consensus 250 -iplkIl~Ie-tG~~l~s~~~~L~~sk~i~FiE~~---~ekLLIK-Qed~~L~I~Dv~~~-ki~------~v~~t~~~~P 316 (396)
..=.||-+. +|+...... -+...+-+.|...- ..+|++. ..+..|..||+... .+. ..+.+....|
T Consensus 150 ~~~G~v~~~~~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 150 EKFGSIYCFTTDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp SSCEEEEEECTTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred cCCceEEEEeecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence 111455554 566554433 23343456665521 1257765 46778888887643 332 2333444457
Q ss_pred ceEEEeecCeEEEEEEc-CeEEEEeccc-ceeeeeccccccCCC---CCCC-cEEEccCC
Q 016020 317 SAFIFLYENQLFLTFRN-RTVAVWNFRG-ELVTSFEDHLLWHPD---CNTN-NIYITSDQ 370 (396)
Q Consensus 317 sAFiFly~~qLFLTfs~-gti~iWd~~g-eL~t~fedh~l~~~~---c~~n-~~~it~~q 370 (396)
....+-.+++||++-.. +.|.+||-+| ++++.++....+..+ -+++ ++|||..+
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~ 288 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence 78888889999998765 8999999886 677777655444222 2343 58888644
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=89.19 E-value=6.3 Score=34.07 Aligned_cols=187 Identities=12% Similarity=0.097 Sum_probs=104.2
Q ss_pred CCCeEEeeCCCCcEEEeecC----CCeEEEEeccCceEEEEecc----CceEEEEEcCCeEEEEEecCC-Ce-eeeEEEE
Q 016020 187 WPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSS-SH-VPLKILS 256 (396)
Q Consensus 187 ~PgfVEFDd~NgkIlt~~a~----d~~YrVwdlknYs~lysIs~----~~VqEIkiSpg~~Ll~~q~~~-~~-iplkIl~ 256 (396)
.|.=+-||+ +|++++.+.. ...+...+..+-...-.+.+ ....++++.+.=-+.+....+ .. -.-.++-
T Consensus 83 ~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~ 161 (319)
T d2dg1a1 83 NPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 161 (319)
T ss_dssp SEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred CeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEE
Confidence 466677776 6776665433 22233334444333333332 346678887433344433221 11 1122444
Q ss_pred ee-cCcEEEEEEeecccCCccchhhhhcceeeEe-ecCCeeeEEEccc-ceEE-------EecccccCCCceEEEeecCe
Q 016020 257 IE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-AELM-------EVSRTEFMTPSAFIFLYENQ 326 (396)
Q Consensus 257 Ie-tG~~l~s~~~~L~~sk~i~FiE~~~ekLLIK-Qed~~L~I~Dv~~-~ki~-------~v~~t~~~~PsAFiFly~~q 326 (396)
+. +|+.+..+..-+...+-|.|.+ .++.|++. ..+..|..||+.. +... ....+....|....+-.+++
T Consensus 162 ~~~dg~~~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~ 240 (319)
T d2dg1a1 162 VSPDFRTVTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 240 (319)
T ss_dssp ECTTSCCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred EecccceeEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence 43 3544444443445555688777 77777666 4677899998753 1111 12223334588888888999
Q ss_pred EEEEEEc-CeEEEEecccceeeeecc--ccccCCCCCCCcEEEccCCcEEEE
Q 016020 327 LFLTFRN-RTVAVWNFRGELVTSFED--HLLWHPDCNTNNIYITSDQDLIIS 375 (396)
Q Consensus 327 LFLTfs~-gti~iWd~~geL~t~fed--h~l~~~~c~~n~~~it~~qd~ii~ 375 (396)
||++-.. +.|.+||-+|+++..++= ...-+...+++-.|.....++++.
T Consensus 241 l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 241 LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred EEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence 9999876 899999999998776641 111122234444555555555554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=88.76 E-value=6.1 Score=33.41 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=106.4
Q ss_pred CCCCeEEeeCCCCcEEEeecCCCeEEEEeccC----ceEEEEecc-CceEEEEEcCCeEEEEEecCCCeeeeEEEEeecC
Q 016020 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (396)
Q Consensus 186 ~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlkn----Ys~lysIs~-~~VqEIkiSpg~~Ll~~q~~~~~iplkIl~IetG 260 (396)
.+|.=+-||+ +|++++.+..++...+|++.. .+.+...++ .....+.+.++=.+++....+. .+..++..+|
T Consensus 68 ~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~--~i~~~~~~~~ 144 (302)
T d2p4oa1 68 GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG--AIWLIDVVQP 144 (302)
T ss_dssp SEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTT--EEEEEETTTT
T ss_pred CCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccc--cceeeeccCC
Confidence 4577789998 899988887777777777653 335555554 6688899987777777666533 3344555565
Q ss_pred cEEEEEEeec-ccCCc------cchhhhhcceeeEe-ecCCeeeEEEcccceEEEe--cccccCCCceEEEeecCeEEEE
Q 016020 261 TVLKVFYHLL-HRNKK------VDFIEQFNEKLLVK-QENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLT 330 (396)
Q Consensus 261 ~~l~s~~~~L-~~sk~------i~FiE~~~ekLLIK-Qed~~L~I~Dv~~~ki~~v--~~t~~~~PsAFiFly~~qLFLT 330 (396)
....-+.... ..... ..-+...++.|++- ..+..|.-+|+........ ..+....|..+.|-.++.||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va 224 (302)
T d2p4oa1 145 SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA 224 (302)
T ss_dssp EEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE
T ss_pred cceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE
Confidence 5433222100 00000 11111234444443 3555666666544322111 1123556889999999999998
Q ss_pred EEc-CeEEEEecccce--eeeeccccccCCC------CCC-CcEEEccCC
Q 016020 331 FRN-RTVAVWNFRGEL--VTSFEDHLLWHPD------CNT-NNIYITSDQ 370 (396)
Q Consensus 331 fs~-gti~iWd~~geL--~t~fedh~l~~~~------c~~-n~~~it~~q 370 (396)
-.. +.|..|+-+|+. +...++.+.+... -+| +++|||...
T Consensus 225 ~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 225 THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 765 899999999974 3445544322111 222 458888655
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=3.3 Score=38.44 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=88.3
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCcEEEeecCCCeEEEEeccCceEEEEecc-----CceEEEEEc
Q 016020 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KHVQEIKIS 235 (396)
Q Consensus 161 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfVEFDd~NgkIlt~~a~d~~YrVwdlknYs~lysIs~-----~~VqEIkiS 235 (396)
+.+++|++..|++....+- ..| + + .+. ..|...++.+.+||+++.+.---++. ..+....+|
T Consensus 3 ~~~tle~~~~~~~~~~~~~-----~~W---~---~-~~~-~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S 69 (465)
T d1xfda1 3 KKVTVEDLFSEDFKIHDPE-----AKW---I---S-DTE-FIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS 69 (465)
T ss_dssp CCCCHHHHTCTTTCCCCCC-----CCB---S---S-SSC-BCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC
T ss_pred CceeHHHHhCCccccCCCC-----CEE---e---C-CCc-EEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEEC
Confidence 3567888877765433321 122 1 1 122 34555677788888888774322333 467788899
Q ss_pred CCeE-EEEEecC------CCeeeeEEEEeecCcEEEEEEeecccCCc---cchhhhhcceeeEeecCCeeeEEEcccceE
Q 016020 236 PGIM-LLIFNRS------SSHVPLKILSIEDGTVLKVFYHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (396)
Q Consensus 236 pg~~-Ll~~q~~------~~~iplkIl~IetG~~l~s~~~~L~~sk~---i~FiE~~~ekLLIKQed~~L~I~Dv~~~ki 305 (396)
|+-- +|+..-. ....-+-|+|+++|+...-.. .-..... ..|.+ .|++|..-. +.+|-+.+..+++.
T Consensus 70 pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~-~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~ 146 (465)
T d1xfda1 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-PEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQA 146 (465)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-TTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCC
T ss_pred CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC-ccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCce
Confidence 8643 3333221 223567889999998543211 0011122 55666 788886654 45777778777665
Q ss_pred EEecc-cc-----------------cCCCceEEEeecCeEEEEE
Q 016020 306 MEVSR-TE-----------------FMTPSAFIFLYENQLFLTF 331 (396)
Q Consensus 306 ~~v~~-t~-----------------~~~PsAFiFly~~qLFLTf 331 (396)
+.+.. +. .-..+|+-|+|+++-++..
T Consensus 147 ~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~ 190 (465)
T d1xfda1 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (465)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred EEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence 44322 11 1234688899999875544
|