Citrus Sinensis ID: 016027
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFM6 | 602 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.651 | 0.549 | 1e-130 | |
| Q0WP85 | 509 | Pentatricopeptide repeat- | no | no | 0.878 | 0.683 | 0.340 | 4e-47 | |
| Q9LN22 | 537 | Pentatricopeptide repeat- | no | no | 0.929 | 0.685 | 0.297 | 1e-46 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.931 | 0.579 | 0.309 | 2e-45 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.949 | 0.589 | 0.292 | 1e-44 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.833 | 0.441 | 0.291 | 4e-44 | |
| Q9FKR3 | 596 | Pentatricopeptide repeat- | no | no | 0.914 | 0.607 | 0.297 | 1e-42 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.916 | 0.711 | 0.297 | 7e-42 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.871 | 0.667 | 0.294 | 1e-41 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.926 | 0.613 | 0.269 | 1e-40 |
| >sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/393 (54%), Positives = 298/393 (75%), Gaps = 1/393 (0%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
++ L KA+EF+ AW L+ D++ E + VS DTF++LIRRYARAGMV+ AI FEFA
Sbjct: 141 VVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFAR 200
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHK-RKELDQSWAPTVRVYNILLNGW 119
+ + V + L E+LLD+LCK+G V+ AS Y + +D +W P+VR++NILLNGW
Sbjct: 201 SYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGW 260
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
FRS+ +K AE+ W EM+ NV P VVTYGTL+EGYCR+RRV A+ +++EM+ +E N
Sbjct: 261 FRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINF 320
Query: 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239
+V+N +IDGL EAGR E GMMERF VCE GPT+VTY SLVK +CKAGDL GASKILKM
Sbjct: 321 MVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKM 380
Query: 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299
M++RG P+ TTYN+FF+YFSK K E+ MNLY K+IE+G++PDRLTYH++LK+LC++ K
Sbjct: 381 MMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGK 440
Query: 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
L LA+QV+KEMK RG D DL T+TMLIHLLCR+ +EA EF++ +RRG++P Y+TFK
Sbjct: 441 LSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKM 500
Query: 360 LNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
+++ + +GM+ +A++L ++MSS+P S +L ++
Sbjct: 501 IDNGLRSKGMSDMAKRLSSLMSSLPHSKKLPNT 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 188/370 (50%), Gaps = 22/370 (5%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+I +L + ++FD L+++ D S +TF+IL++R AG+ A+ F+ A
Sbjct: 111 IIDILGRVRQFDVVRQLIVEM-------DQTSPETFLILVKRLIAAGLTRQAVRAFDDAP 163
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
++N F LLD+LCK G K A F++RKE + +VY IL+ GW
Sbjct: 164 CF--LENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKE---EFGSDEKVYTILIAGWC 218
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL----------RRVDRAIRLVKEM 170
+ + + AE+F +EM + + PNVVTY L+ G CR R V A ++ EM
Sbjct: 219 KLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEM 278
Query: 171 RKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230
R+ GIEP+ ++ V+ A + E M+ PT+ TYTS+VK C G L
Sbjct: 279 RQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRL 338
Query: 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290
E A ++L+ M+ G PS TYN FF+ + AMNLYRKM P TY++L
Sbjct: 339 EEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVL 398
Query: 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL 350
L K++ ++ ++K DLD+ T L+H LC K+ EA F +MI RG
Sbjct: 399 LGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGF 458
Query: 351 VPHYLTFKRL 360
+P LTF+ L
Sbjct: 459 LPQKLTFETL 468
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 200/383 (52%), Gaps = 15/383 (3%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
MI + K ++FD AW L+D + V +S +TF ILIRRY RAG+ A+ F
Sbjct: 157 MIDLSGKVRQFDLAW-HLIDLMKSRNVE--ISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
+ V + F I++ +L ++ R A +F L + P V VY L+ GW
Sbjct: 214 DYGCVPD----KIAFSIVISNLSRKRRASEAQSFF---DSLKDRFEPDVIVYTNLVRGWC 266
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
R+ + +AE+ + EM+ + PNV TY +++ CR ++ RA + +M G PNAI
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAI 326
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERF--LVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238
+N ++ V+AGR E+V + + L CEP +TY L++ +C+ +LE A K+L
Sbjct: 327 TFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPD--TITYNFLIEAHCRDENLENAVKVLN 384
Query: 239 MMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298
MI + + +T+N FRY K V A +Y KM+E+ P+ +TY+IL+++
Sbjct: 385 TMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSK 444
Query: 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMI-RRGLVPHYLTF 357
D+ +++ KEM + + +++T +L+ + C M ++ A F++M+ + L P +
Sbjct: 445 STDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLY 504
Query: 358 KRLNDEFKKRGMTALAQKLCNVM 380
+ + + ++ G ++L M
Sbjct: 505 EMVLAQLRRAGQLKKHEELVEKM 527
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 205/388 (52%), Gaps = 19/388 (4%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
M+K+L+K ++F + W L+ + E P + + FV+L++R+A A MV+ AI +
Sbjct: 153 MVKILSKMRQFGAVWGLIEEM--RKENPQLIEPELFVVLVQRFASADMVKKAIEVLD--- 207
Query: 61 NLDMVK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+M K F+ +F LLD+LCK G VK A++ F +++ + +R + LL GW
Sbjct: 208 --EMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLF---EDMRMRFPVNLRYFTSLLYGW 262
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
R + +A+ ++M + P++V Y L+ GY ++ A L+++MR+ G EPNA
Sbjct: 263 CRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNA 322
Query: 180 IVYNTVIDGLVEAGRFEEVSGM---MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKI 236
Y +I L + R EE + MER+ E +VTYT+LV G+CK G ++ +
Sbjct: 323 NCYTVLIQALCKVDRMEEAMKVFVEMERY---ECEADVVTYTALVSGFCKWGKIDKCYIV 379
Query: 237 LKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296
L MI +G +PS TY + K E+ + L KM + Y PD Y++++++ CK
Sbjct: 380 LDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 439
Query: 297 EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL--VPHY 354
++ A+++ EM+ G +DT ++I+ L EAS F++M+ RGL V Y
Sbjct: 440 LGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQY 499
Query: 355 LTFKRLNDEFKKRGMTALAQKLCNVMSS 382
T K L + K +A+ + + ++S
Sbjct: 500 GTLKLLLNTVLKDKKLEMAKDVWSCITS 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 206/396 (52%), Gaps = 20/396 (5%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
M+ +L+K ++F + W L+ + + P+ + + FV+L+RR+A A MV+ A+ +
Sbjct: 137 MVMILSKMRQFGAVWGLIEEMRKTN--PELIEPELFVVLMRRFASANMVKKAVEVLD--- 191
Query: 61 NLDMVK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+M K + +F LLD+LCK G VK AS+ F +++ + + P +R + LL GW
Sbjct: 192 --EMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVF---EDMREKFPPNLRYFTSLLYGW 246
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
R + +A+ ++M++ + P++V + L+ GY ++ A L+ +MRK G EPN
Sbjct: 247 CREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNV 306
Query: 180 IVYNTVIDGLVEA-GRFEEVSGM---MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASK 235
Y +I L R +E + MER+ CE +VTYT+L+ G+CK G ++
Sbjct: 307 NCYTVLIQALCRTEKRMDEAMRVFVEMERY-GCEA--DIVTYTALISGFCKWGMIDKGYS 363
Query: 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295
+L M +G +PS TY K + E+ + L KM G PD L Y++++++ C
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423
Query: 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL--VPH 353
K ++ A+++ EM+ G +DT ++I+ EA F++M+ RG+ P
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQ 483
Query: 354 YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389
Y T K L + + +A+ + + +S+ S EL
Sbjct: 484 YGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCEL 519
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 186/370 (50%), Gaps = 40/370 (10%)
Query: 30 FVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVK 89
+ + F ++++ Y+R +++ A+ A F G + +LD+ + R
Sbjct: 131 YSTSSVFDLVVKSYSRLSLIDKALSIVHLAQ----AHGFMPGVLSYNAVLDATIRSKRNI 186
Query: 90 AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149
+ +E K L+ +P V YNIL+ G+ + N+ A + +M + PNVVTY T
Sbjct: 187 SFAENVFKEM-LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245
Query: 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF---- 205
L++GYC+LR++D +L++ M +G+EPN I YN VI+GL GR +EVS ++
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 206 ----------LV---CEPG------------------PTMVTYTSLVKGYCKAGDLEGAS 234
L+ C+ G P+++TYTSL+ CKAG++ A
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 235 KILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKIL 294
+ L M RG P+ TY FS+ G + +A + R+M ++G++P +TY+ L+
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 295 CKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY 354
C K++ AI V ++MK +G D+ + + ++ CR Y DEA +M+ +G+ P
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDT 485
Query: 355 LTFKRLNDEF 364
+T+ L F
Sbjct: 486 ITYSSLIQGF 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 194/404 (48%), Gaps = 42/404 (10%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEV-----------------PDFVSKDTFVILIRRY 43
MI +L K K F +A LLDK+ E+ P+ VS F L+ Y
Sbjct: 86 MILILTKHKHFKTAH-QLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVSH-VFSWLMIYY 143
Query: 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103
A+AGM+ +I FE + + + + +LL+SL KQ + F K +L
Sbjct: 144 AKAGMINDSIVVFEQIRSCGLKPHLQACT----VLLNSLVKQRLTDTVWKIFKKMVKLGV 199
Query: 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163
+ VYN+L++ +S + + AE+ EM ++ V P++ TY TL+ YC+ A
Sbjct: 200 --VANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEA 257
Query: 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223
+ + M + G+ PN + YN+ I G GR E + + R + + VTYT+L+ G
Sbjct: 258 LSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLF-REIKDDVTANHVTYTTLIDG 316
Query: 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283
YC+ D++ A ++ ++M SRGF P TYN R + G++ +A L +M PD
Sbjct: 317 YCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPD 376
Query: 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343
+T + L+ CK + + A++V K+M G +D+ + LIH C++ + + A E
Sbjct: 377 NITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELF 436
Query: 344 DMIRRGLVPHYLTFKRLND----------------EFKKRGMTA 371
MI +G P Y T+ L D EF+KRG+ A
Sbjct: 437 SMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCA 480
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 187/380 (49%), Gaps = 17/380 (4%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+I+ L K K+F W L+ D + +SK+TF ++ RRYARA V+ AI F
Sbjct: 134 LIESLGKIKQFKLIWSLVDD----MKAKKLLSKETFALISRRYARARKVKEAIGAFHKME 189
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
F +S F +LD+L K V A + F K K+ + + P ++ Y ILL GW
Sbjct: 190 EF----GFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKK--KRFEPDIKSYTILLEGWG 243
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
+ N+ + EM+ E P+VV YG ++ +C+ ++ + AIR EM + +P+
Sbjct: 244 QELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPH 303
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
++ ++I+GL + + ER TY +LV YC + +E A K + M
Sbjct: 304 IFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEM 363
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
+G P+ TY+ + + + ++A +Y+ M P TY I++++ C +++L
Sbjct: 364 RLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERL 420
Query: 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 360
D+AI++ EMK +G + + LI LC K DEA F +M+ G+ P F RL
Sbjct: 421 DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRL 480
Query: 361 N----DEFKKRGMTALAQKL 376
DE +K +T L K+
Sbjct: 481 KQTLLDEGRKDKVTDLVVKM 500
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 186/363 (51%), Gaps = 18/363 (4%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
MI+ AK +++ W D I ++ +TF I++R+YARA V+ AI+ F
Sbjct: 140 MIESTAKIRQYKLMW----DLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVME 195
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
D+ N + F LL +LCK V+ A E F ++ + P + Y+ILL GW
Sbjct: 196 KYDLPPNLVA----FNGLLSALCKSKNVRKAQEVFENMRD---RFTPDSKTYSILLEGWG 248
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
+ N+ A + EM P++VTY +V+ C+ RVD A+ +V+ M +P
Sbjct: 249 KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 308
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPG---PTMVTYTSLVKGYCKAGDLEGASKIL 237
+Y+ ++ R EE ++ FL E + + SL+ +CKA ++ ++L
Sbjct: 309 IYSVLVHTYGTENRLEEA---VDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 365
Query: 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297
K M S+G P+ + N R+ + G+ ++A +++RKMI+ PD TY +++K+ C++
Sbjct: 366 KEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMVIKMFCEK 424
Query: 298 DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTF 357
+++ A +V K M+ +G + T ++LI+ LC +A E+MI G+ P +TF
Sbjct: 425 KEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484
Query: 358 KRL 360
RL
Sbjct: 485 GRL 487
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 175/379 (46%), Gaps = 12/379 (3%)
Query: 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANN 61
++ + + E + + L + + VPD + T LIR + R G A E
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTT---LIRGFCRLGKTRKAAKILEILEG 165
Query: 62 LDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR 121
V + + + +++ CK G + A + S +P V YN +L
Sbjct: 166 SGAVPDVIT----YNVMISGYCKAGEINNALSVLDR-----MSVSPDVVTYNTILRSLCD 216
Query: 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181
S +K A M + + P+V+TY L+E CR V A++L+ EMR G P+ +
Sbjct: 217 SGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVT 276
Query: 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241
YN +++G+ + GR +E + P ++T+ +++ C G A K+L M+
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336
Query: 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLD 301
+GF PS T+N + + G + A+++ KM + G P+ L+Y+ LL CKE K+D
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396
Query: 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361
AI+ + M RGC D+ T ++ LC+ K ++A + +G P +T+ +
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 362 DEFKKRGMTALAQKLCNVM 380
D K G T A KL + M
Sbjct: 457 DGLAKAGKTGKAIKLLDEM 475
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| 224089100 | 607 | predicted protein [Populus trichocarpa] | 0.989 | 0.645 | 0.688 | 1e-165 | |
| 225430190 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.888 | 0.589 | 0.661 | 1e-159 | |
| 255551140 | 577 | pentatricopeptide repeat-containing prot | 0.972 | 0.667 | 0.676 | 1e-159 | |
| 449437378 | 615 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.635 | 0.653 | 1e-154 | |
| 357436823 | 587 | Pentatricopeptide repeat-containing prot | 0.989 | 0.667 | 0.647 | 1e-148 | |
| 356561955 | 622 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.628 | 0.632 | 1e-144 | |
| 297807171 | 602 | pentatricopeptide repeat-containing prot | 0.989 | 0.651 | 0.554 | 1e-130 | |
| 15239018 | 602 | pentatricopeptide repeat-containing prot | 0.989 | 0.651 | 0.549 | 1e-129 | |
| 125526118 | 556 | hypothetical protein OsI_02112 [Oryza sa | 0.974 | 0.694 | 0.450 | 8e-95 | |
| 115436834 | 541 | Os01g0506100 [Oryza sativa Japonica Grou | 0.974 | 0.713 | 0.448 | 2e-94 |
| >gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 270/392 (68%), Positives = 329/392 (83%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
M+ L KA+EF SAWCLLLD+IGG+E D VS DTF ILIRRY RAGM EAAI TFE+A+
Sbjct: 153 MVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRTFEYAS 212
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
+LD++ N ++G SLFEILLDSLCK+G V+ A++YF ++ E D W P+VR+YNILLNGWF
Sbjct: 213 SLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWF 272
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
RS+ +K AER WLEM+K+NV P+VVTYGTLVEGY R+RRV+RAI LV EM++EGI+ NAI
Sbjct: 273 RSRKLKHAERLWLEMKKKNVKPSVVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAI 332
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
VYN +ID L EAGRF+EV GMME F +CE GPT+ TY SLVKGYCKAGDL GASKILKMM
Sbjct: 333 VYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMM 392
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
ISR P+PTTYNYFFR+FSK K+E+ MNLY KMIESGYTPDRLTYH+LLK+LC+E++L
Sbjct: 393 ISREVFPTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERL 452
Query: 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 360
DLA+Q+SKEM+ RGCD+DL TSTM HLLC+M +F+EA AEFEDM+RRG+VP YLTF RL
Sbjct: 453 DLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRL 512
Query: 361 NDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
NDEF+K+G+T LA++LC +MSSV S L ++
Sbjct: 513 NDEFRKQGLTELARRLCKLMSSVSHSKNLPNT 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Vitis vinifera] gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/396 (66%), Positives = 330/396 (83%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
MI VLAK++ FDSAW L+LD+I G E P+ VS +TF +LIRRYARAGM +AI TFEFA
Sbjct: 143 MIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAF 202
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
+LD +++ DS SLF+ILLDSLCK+G V+ ASEYF +++ LD SW P++RVYN+LLNGWF
Sbjct: 203 SLDSIRDRDSEWSLFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWF 262
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
RS+ +K AE+ W M++ENV P VVTYGTLVEGYCR+RR ++AI LV EMR +GIEPN I
Sbjct: 263 RSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVI 322
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
VYN +ID L EAGRF+E GMMER LV E GPT+ TY SLVKG+CKAGDL GASK+LKMM
Sbjct: 323 VYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMM 382
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
ISRGF P+ TTYNYFFRYFS+ GK E+ MNLY KMIESG+TPDRLTYH+L+K++C+E++L
Sbjct: 383 ISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEERL 442
Query: 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 360
DLA+QVSKEM+ RGCD+DL TSTML+HLLC+M++ +EA AEFEDMIRRG+VP YLTF+R+
Sbjct: 443 DLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFERM 502
Query: 361 NDEFKKRGMTALAQKLCNVMSSVPRSMELLDSRCKD 396
N+ +KRG+T +A+KLC++M+SVP S +L ++ D
Sbjct: 503 NNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGD 538
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/392 (67%), Positives = 321/392 (81%), Gaps = 7/392 (1%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+I L K KEFDSAWCL+LD+ G VS DTF ILIRRY RAGM ++AI TFE+A
Sbjct: 129 VINALGKMKEFDSAWCLVLDRTG------LVSSDTFAILIRRYTRAGMPQSAIRTFEYAI 182
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
+LD + +++ A L EILLDSLCK+G V+ A EYF RK+LD W P VR+YNI+LNGWF
Sbjct: 183 SLDFICDYNCDA-LLEILLDSLCKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWF 241
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
RS+ +K AER WLEM+K NV+P+VVTYGTLVEGYCR+RRV+RAI LV MRKEGIEPNA+
Sbjct: 242 RSRKLKHAERLWLEMKKNNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNAL 301
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
VYN +ID L E GRF+EVSGMME FL E GPT+ TY SLVKGYCKA D GASK+LKMM
Sbjct: 302 VYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMM 361
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
ISRGF+P+PTTYNYFFR+FSKFG +E+ MNLY KMIESGYTPDRLT+H+LLK+LC+E++L
Sbjct: 362 ISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERL 421
Query: 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 360
DLA+Q+SKEM+ RGCD+DL TSTMLIHL CRM++F+EA EFEDMI++G+VP YLTF+RL
Sbjct: 422 DLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRL 481
Query: 361 NDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
NDE +KRGM A+KL ++MSSVP S L ++
Sbjct: 482 NDELRKRGMVERARKLSDMMSSVPHSTNLPNT 513
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial-like [Cucumis sativus] gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 256/392 (65%), Positives = 320/392 (81%), Gaps = 1/392 (0%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+I VLAK++EFDSAW L+ ++ G E VS + FVILIRRYARAGMV+ AI T+EFA
Sbjct: 160 LINVLAKSREFDSAWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFAC 219
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
NL+ + S LFEILLDSLCK+G V+ ASEYF++++E+ S+ P++R YNIL+NGWF
Sbjct: 220 NLETISGTGS-EGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWF 278
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
RS+ +K A+R W EM+K ++P VVTYGTL+EGYCR+R V+ AI LV EMR+EGIEPNAI
Sbjct: 279 RSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAI 338
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
VYN ++D L EAGRF+E GMMERF+V E GPT+ TY SLVKGYCKAGDL GASKILKMM
Sbjct: 339 VYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMM 398
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
I RGF P+PTTYNYFFR+FSK+GK+E++M+LY KMIESGY PD+LTYH+LLK+LC+E++L
Sbjct: 399 IGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERL 458
Query: 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 360
+LA+QV EMK RG D+DL TSTML+HLLC+M+KF+EA AEFE MI RG+VP YLTF RL
Sbjct: 459 NLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRL 518
Query: 361 NDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
+DEF KRG+T +A KL +MSSVP S +L D+
Sbjct: 519 HDEFMKRGLTKMASKLQEMMSSVPHSEKLPDT 550
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/394 (64%), Positives = 317/394 (80%), Gaps = 2/394 (0%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEV--PDFVSKDTFVILIRRYARAGMVEAAIWTFEF 58
+I LAK KEFD AW L+LD+I + VS TF I+IRRYARAGM +AAI TFEF
Sbjct: 144 VINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEF 203
Query: 59 ANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118
A + + + S SLFEIL+DSLCK+G + ASEY +RKE D W P++RVYNI+LNG
Sbjct: 204 AKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNG 263
Query: 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN 178
WFR++ +K AER W EM+ ENV P+VVTYGTLVEGYCR+RRV++A+ +V EM KEGI+PN
Sbjct: 264 WFRARKLKHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPN 323
Query: 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238
AIVYN +ID L EAGRF+E GMMERF V + GPT+ TY SLVKG+CKAGD+EGASKILK
Sbjct: 324 AIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILK 383
Query: 239 MMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298
MISRGFLP PTTYNYFFRYFS+ GKV++ MNLY KMIESG+ PDRLTYH++LK+LC+E+
Sbjct: 384 KMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEE 443
Query: 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFK 358
KL+LA+QVS EM+ +G D+DL TSTML HLLC+M+K +EA AEFEDMIRRG++P YLTF+
Sbjct: 444 KLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQ 503
Query: 359 RLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
+LN E KK+GM +A+KLC++MSSVP S +L ++
Sbjct: 504 KLNVELKKQGMNEMARKLCHLMSSVPYSDKLPNT 537
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/397 (63%), Positives = 309/397 (77%), Gaps = 6/397 (1%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPD-----FVSKDTFVILIRRYARAGMVEAAIWT 55
++ LAKA+EFD+AW L+L + VS TF I+IRRYARAGM + AI T
Sbjct: 164 VVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRT 223
Query: 56 FEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115
+EFA N + + S SL EIL+DSLCK+G V+ ASEYF +KELD SW P++RVYNI+
Sbjct: 224 YEFATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIM 283
Query: 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI 175
LNGWFR + +K ER W EM KEN+ P VVTYGTLVEGYCR+RRV++A+ +V +M KEGI
Sbjct: 284 LNGWFRLRKLKQGERLWAEM-KENMRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGI 342
Query: 176 EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASK 235
PNAIVYN +ID L EAGRF+E GM+ERF V E GPT TY SLVKG+CKAGDL GASK
Sbjct: 343 APNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASK 402
Query: 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295
ILKMMISRGFLPS TTYNYFFRYFS+ K+E+ MNLY K+I+SGYTPDRLTYH+L+K+LC
Sbjct: 403 ILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLC 462
Query: 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYL 355
+E+KLDLA+QVSKEM+ G D+DL TSTML+HLLC++ + +EA EFEDMIRRG+VP YL
Sbjct: 463 EEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYL 522
Query: 356 TFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
TF+R+ + KK+GMT +AQKLC +MSSVP S L ++
Sbjct: 523 TFQRMKADLKKQGMTEMAQKLCKLMSSVPYSPNLPNT 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 218/393 (55%), Positives = 300/393 (76%), Gaps = 1/393 (0%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+I L KA+EF+ AW L+ D++ E + VS DTF++LIRRYARAGMV+ AI FEFA
Sbjct: 141 VINSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFAR 200
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-DQSWAPTVRVYNILLNGW 119
+ + V S L E+LLD+LCK+G V+ AS Y +R+ + D +W P+VR++NILLNGW
Sbjct: 201 SYEPVCKSASELKLLEVLLDALCKEGYVREASVYLERRRGMMDSNWVPSVRIFNILLNGW 260
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
FRS+ +K AE+ W EM+ NV P VVTYGTL+EGYCR+RRV+ A+ +++EM+ +E
Sbjct: 261 FRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTF 320
Query: 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239
+V+N +IDGL EAGR E GMMERF VCE GPT+VTY SLVK +CKAGDL GASKILKM
Sbjct: 321 MVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKM 380
Query: 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299
M++RG P+ +TYN+FF+YFSK K E+ MNLY K+IE+G++PDRLTYH++LK+LC++ K
Sbjct: 381 MMTRGVEPTTSTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGK 440
Query: 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
L LAIQV+KEMK RG D DL T+TML+HLLCR+ +EA EF++ +RRG++P Y+TFK
Sbjct: 441 LSLAIQVNKEMKNRGIDPDLLTTTMLMHLLCRLDMLEEAFEEFDNAVRRGIIPQYITFKM 500
Query: 360 LNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
+++ + +GMT +A++L ++MSS+P S +L ++
Sbjct: 501 IDNGLRSKGMTDMAKRLSSLMSSLPHSKKLPNT 533
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g11310, mitochondrial; Flags: Precursor gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana] gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana] gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/393 (54%), Positives = 298/393 (75%), Gaps = 1/393 (0%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
++ L KA+EF+ AW L+ D++ E + VS DTF++LIRRYARAGMV+ AI FEFA
Sbjct: 141 VVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFAR 200
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHK-RKELDQSWAPTVRVYNILLNGW 119
+ + V + L E+LLD+LCK+G V+ AS Y + +D +W P+VR++NILLNGW
Sbjct: 201 SYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGW 260
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
FRS+ +K AE+ W EM+ NV P VVTYGTL+EGYCR+RRV A+ +++EM+ +E N
Sbjct: 261 FRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINF 320
Query: 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239
+V+N +IDGL EAGR E GMMERF VCE GPT+VTY SLVK +CKAGDL GASKILKM
Sbjct: 321 MVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKM 380
Query: 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299
M++RG P+ TTYN+FF+YFSK K E+ MNLY K+IE+G++PDRLTYH++LK+LC++ K
Sbjct: 381 MMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGK 440
Query: 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
L LA+QV+KEMK RG D DL T+TMLIHLLCR+ +EA EF++ +RRG++P Y+TFK
Sbjct: 441 LSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKM 500
Query: 360 LNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
+++ + +GM+ +A++L ++MSS+P S +L ++
Sbjct: 501 IDNGLRSKGMSDMAKRLSSLMSSLPHSKKLPNT 533
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 178/395 (45%), Positives = 247/395 (62%), Gaps = 9/395 (2%)
Query: 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEF--- 58
+ +LA F +AW LLL P F L+RRYAR G AA+ F+F
Sbjct: 77 VSLLASRGLFAAAWRLLLAP-----SPTPPPLAAFAPLVRRYARLGRAPAALRAFQFLRR 131
Query: 59 -ANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117
+ + + ASL + +D+LCK+G +AA E F + + + P R YNILL+
Sbjct: 132 HPDRYMAGGDIPAAASLLNMAVDALCKEGHPRAAVELFERWRREEPDSPPDERAYNILLH 191
Query: 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177
GW R+ + + W EMR V P VVTYGTL+EG C RR D+AI L+ EMR+EGIE
Sbjct: 192 GWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEA 251
Query: 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237
N + N ++ L +AGRF++ ++E+F + P + T+ SLV GYCK GDL GAS +L
Sbjct: 252 NLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVL 311
Query: 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297
K+M RG P+ TYNYFF F+K VE MN Y KMI +GY+PD+LTY +L+K+L +
Sbjct: 312 KVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRA 371
Query: 298 DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTF 357
++L+L +Q+ +EM+ G + DL TSTMLIHLLCR ++F+EA AEFEDM +RG+VP Y+T+
Sbjct: 372 NRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFKRGIVPQYITY 431
Query: 358 KRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
++L E K+ G+ L QKL N+M SVP S +L S
Sbjct: 432 QKLMRELKRLGLVRLIQKLTNLMRSVPHSTKLPGS 466
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group] gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group] gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group] gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/395 (44%), Positives = 246/395 (62%), Gaps = 9/395 (2%)
Query: 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEF--- 58
+ +L F +AW LLL P F L+RRYAR G AA+ F+F
Sbjct: 77 VSLLTSRGLFAAAWRLLLAP-----SPTPPPLAAFAPLVRRYARLGRAPAALRAFQFLRR 131
Query: 59 -ANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117
+ + + ASL + +D+LCK+G +AA E F + + + P R YNILL+
Sbjct: 132 HPDRYMAGGDIPAAASLLNMAVDALCKEGHPRAAVELFERWRREEPDSPPDERAYNILLH 191
Query: 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177
GW R+ + + W EMR V P VVTYGTL+EG C RR D+AI L+ EMR+EGIE
Sbjct: 192 GWSRAGRLDKVGKLWAEMRLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEA 251
Query: 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237
N + N ++ L +AGRF++ ++E+F + P + T+ SLV GYCK GDL GAS +L
Sbjct: 252 NLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHGDLAGASSVL 311
Query: 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297
K+M RG P+ TYNYFF F+K VE MN Y KMI +GY+PD+LTY +L+K+L +
Sbjct: 312 KVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTYVLLVKMLSRA 371
Query: 298 DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTF 357
++L+L +Q+ +EM+ G + DL TSTMLIHLLCR ++F+EA AEFEDM +RG+VP Y+T+
Sbjct: 372 NRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFKRGIVPQYITY 431
Query: 358 KRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDS 392
++L E K+ G+ L QKL N+M SVP S +L S
Sbjct: 432 QKLMRELKRLGLVHLIQKLTNLMRSVPHSTKLPGS 466
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| TAIR|locus:2147947 | 602 | AT5G11310 "AT5G11310" [Arabido | 0.982 | 0.646 | 0.553 | 1.6e-118 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.929 | 0.685 | 0.302 | 3e-46 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.931 | 0.579 | 0.311 | 6.2e-46 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.949 | 0.589 | 0.295 | 2.7e-45 | |
| TAIR|locus:2166610 | 596 | AT5G38730 "AT5G38730" [Arabido | 0.896 | 0.595 | 0.304 | 4e-42 | |
| TAIR|locus:2204913 | 491 | AT1G02420 "AT1G02420" [Arabido | 0.941 | 0.759 | 0.287 | 4e-42 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.916 | 0.711 | 0.297 | 1.2e-40 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.974 | 0.681 | 0.289 | 3.7e-39 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.934 | 0.574 | 0.280 | 5.1e-39 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.838 | 0.605 | 0.305 | 7.8e-39 |
| TAIR|locus:2147947 AT5G11310 "AT5G11310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 216/390 (55%), Positives = 296/390 (75%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
++ L KA+EF+ AW L+ D++ E + VS DTF++LIRRYARAGMV+ AI FEFA
Sbjct: 141 VVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFAR 200
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHK-RKELDQSWAPTVRVYNILLNGW 119
+ + V + L E+LLD+LCK+G V+ AS Y + +D +W P+VR++NILLNGW
Sbjct: 201 SYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGW 260
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
FRS+ +K AE+ W EM+ NV P VVTYGTL+EGYCR+RRV A+ +++EM+ +E N
Sbjct: 261 FRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINF 320
Query: 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239
+V+N +IDGL EAGR E GMMERF VCE GPT+VTY SLVK +CKAGDL GASKILKM
Sbjct: 321 MVFNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKM 380
Query: 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299
M++RG P+ TTYN+FF+YFSK K E+ MNLY K+IE+G++PDRLTYH++LK+LC++ K
Sbjct: 381 MMTRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGK 440
Query: 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
L LA+QV+KEMK RG D DL T+TMLIHLLCR+ +EA EF++ +RRG++P Y+TFK
Sbjct: 441 LSLAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKM 500
Query: 360 LNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389
+++ + +GM+ +A++L ++MSS+P S +L
Sbjct: 501 IDNGLRSKGMSDMAKRLSSLMSSLPHSKKL 530
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 116/383 (30%), Positives = 202/383 (52%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
MI + K ++FD AW L+ D + V +S +TF ILIRRY RAG+ A+ F
Sbjct: 157 MIDLSGKVRQFDLAWHLI-DLMKSRNVE--ISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
+ V D A F I++ +L ++ R A +F K+ + P V VY L+ GW
Sbjct: 214 DYGCVP--DKIA--FSIVISNLSRKRRASEAQSFFDSLKD---RFEPDVIVYTNLVRGWC 266
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
R+ + +AE+ + EM+ + PNV TY +++ CR ++ RA + +M G PNAI
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAI 326
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERF--LVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238
+N ++ V+AGR E+V + + L CEP +TY L++ +C+ +LE A K+L
Sbjct: 327 TFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDT--ITYNFLIEAHCRDENLENAVKVLN 384
Query: 239 MMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298
MI + + +T+N FRY K V A +Y KM+E+ P+ +TY+IL+++
Sbjct: 385 TMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSK 444
Query: 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR-RGLVPHYLTF 357
D+ +++ KEM + + +++T +L+ + C M ++ A F++M+ + L P +
Sbjct: 445 STDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLY 504
Query: 358 KRLNDEFKKRGMTALAQKLCNVM 380
+ + + ++ G ++L M
Sbjct: 505 EMVLAQLRRAGQLKKHEELVEKM 527
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 121/388 (31%), Positives = 206/388 (53%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
M+K+L+K ++F + W L+ + E P + + FV+L++R+A A MV+ AI +
Sbjct: 153 MVKILSKMRQFGAVWGLIEEM--RKENPQLIEPELFVVLVQRFASADMVKKAIEVLD--- 207
Query: 61 NLDMVK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+M K F+ +F LLD+LCK G VK A++ F +++ + +R + LL GW
Sbjct: 208 --EMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLF---EDMRMRFPVNLRYFTSLLYGW 262
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
R + +A+ ++M + P++V Y L+ GY ++ A L+++MR+ G EPNA
Sbjct: 263 CRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNA 322
Query: 180 IVYNTVIDGLVEAGRFEEVSGM---MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKI 236
Y +I L + R EE + MER+ CE +VTYT+LV G+CK G ++ +
Sbjct: 323 NCYTVLIQALCKVDRMEEAMKVFVEMERY-ECEAD--VVTYTALVSGFCKWGKIDKCYIV 379
Query: 237 LKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296
L MI +G +PS TY + K E+ + L KM + Y PD Y++++++ CK
Sbjct: 380 LDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 439
Query: 297 EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL--VPHY 354
++ A+++ EM+ G +DT ++I+ L EAS F++M+ RGL V Y
Sbjct: 440 LGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQY 499
Query: 355 LTFKRLNDEFKKRGMTALAQKLCNVMSS 382
T K L + K +A+ + + ++S
Sbjct: 500 GTLKLLLNTVLKDKKLEMAKDVWSCITS 527
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 117/396 (29%), Positives = 204/396 (51%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
M+ +L+K ++F + W L+ + + P+ + + FV+L+RR+A A MV+ A+ +
Sbjct: 137 MVMILSKMRQFGAVWGLIEEMRKTN--PELIEPELFVVLMRRFASANMVKKAVEVLD--- 191
Query: 61 NLDMVK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+M K + +F LLD+LCK G VK AS+ F +E + P +R + LL GW
Sbjct: 192 --EMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE---KFPPNLRYFTSLLYGW 246
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
R + +A+ ++M++ + P++V + L+ GY ++ A L+ +MRK G EPN
Sbjct: 247 CREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNV 306
Query: 180 IVYNTVIDGLVEAG-RFEEVSGM---MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASK 235
Y +I L R +E + MER+ CE +VTYT+L+ G+CK G ++
Sbjct: 307 NCYTVLIQALCRTEKRMDEAMRVFVEMERY-GCEAD--IVTYTALISGFCKWGMIDKGYS 363
Query: 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295
+L M +G +PS TY K + E+ + L KM G PD L Y++++++ C
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423
Query: 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL--VPH 353
K ++ A+++ EM+ G +DT ++I+ EA F++M+ RG+ P
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQ 483
Query: 354 YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389
Y T K L + + +A+ + + +S+ S EL
Sbjct: 484 YGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCEL 519
|
|
| TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 111/365 (30%), Positives = 186/365 (50%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGG-HEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFA 59
++ LA+ +E S+ +L +GG E P+ VS F L+ YA+AGM+ +I FE
Sbjct: 102 LLDKLAQ-RELLSSPLVLRSLVGGVSEDPEDVSH-VFSWLMIYYAKAGMINDSIVVFEQI 159
Query: 60 NNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+ + + + +LL+SL KQ + F K +L + VYN+L++
Sbjct: 160 RSCGLKPHLQACT----VLLNSLVKQRLTDTVWKIFKKMVKLGV--VANIHVYNVLVHAC 213
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
+S + + AE+ EM ++ V P++ TY TL+ YC+ A+ + M + G+ PN
Sbjct: 214 SKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNI 273
Query: 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239
+ YN+ I G GR E + + R + + VTYT+L+ GYC+ D++ A ++ ++
Sbjct: 274 VTYNSFIHGFSREGRMREATRLF-REIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREV 332
Query: 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299
M SRGF P TYN R + G++ +A L +M PD +T + L+ CK +
Sbjct: 333 MESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIED 392
Query: 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
+ A++V K+M G +D+ + LIH C++ + + A E MI +G P Y T+
Sbjct: 393 MVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSW 452
Query: 360 LNDEF 364
L D F
Sbjct: 453 LVDGF 457
|
|
| TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 112/390 (28%), Positives = 208/390 (53%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTF-EFA 59
M+ +L + ++FD W LL++ + +S T +++ R A+ V + +F +F
Sbjct: 114 MLYILGRNRKFDQIWELLIET--KRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFK 171
Query: 60 NNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+V +F A F LL +LC++ + A +H K Q P ++ +NILL+GW
Sbjct: 172 R---LVPDFFDTAC-FNALLRTLCQEKSMTDARNVYHSLKHQFQ---PDLQTFNILLSGW 224
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
K+ ++AE F+ EM+ + + P+VVTY +L++ YC+ R +++A +L+ +MR+E P+
Sbjct: 225 ---KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDV 281
Query: 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239
I Y TVI GL G+ ++ +++ P + Y + ++ +C A L A K++
Sbjct: 282 ITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDE 341
Query: 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299
M+ +G P+ TTYN FFR S + + LY +M+ + P+ + L+K+ + +K
Sbjct: 342 MVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEK 401
Query: 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
+D+A+++ ++M +G S +L+ LLC + K +EA +M+ +G P ++FKR
Sbjct: 402 VDMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKR 461
Query: 360 LN--DEF--KKRGMTALAQKLCNVMSSVPR 385
+ E K + L QK+ + +PR
Sbjct: 462 IKLLMELANKHDEVNNLIQKMAIFSTEIPR 491
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 113/380 (29%), Positives = 187/380 (49%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+I+ L K K+F W L+ D + +SK+TF ++ RRYARA V+ AI F
Sbjct: 134 LIESLGKIKQFKLIWSLVDDM----KAKKLLSKETFALISRRYARARKVKEAIGAFHKME 189
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
F +S F +LD+L K V A + F K K+ + + P ++ Y ILL GW
Sbjct: 190 EF----GFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKK--KRFEPDIKSYTILLEGWG 243
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
+ N+ + EM+ E P+VV YG ++ +C+ ++ + AIR EM + +P+
Sbjct: 244 QELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPH 303
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
++ ++I+GL + + ER TY +LV YC + +E A K + M
Sbjct: 304 IFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEM 363
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
+G P+ TY+ + + + ++A +Y+ M P TY I++++ C +++L
Sbjct: 364 RLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERL 420
Query: 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRL 360
D+AI++ EMK +G + + LI LC K DEA F +M+ G+ P F RL
Sbjct: 421 DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRL 480
Query: 361 N----DEFKKRGMTALAQKL 376
DE +K +T L K+
Sbjct: 481 KQTLLDEGRKDKVTDLVVKM 500
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 116/401 (28%), Positives = 199/401 (49%)
Query: 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFAN 60
+IK +A E + ++ LL++ P+ V + LI + G +E A F
Sbjct: 169 LIKGCCEAGEIEKSFDLLIELTEFGFSPNVV---IYTTLIDGCCKKGEIEKAKDLFFEMG 225
Query: 61 NLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120
L +V N + +L++ L K G K E + K +E D + P + YN ++N
Sbjct: 226 KLGLVAN----ERTYTVLINGLFKNGVKKQGFEMYEKMQE-DGVF-PNLYTYNCVMNQLC 279
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180
+ KDA + + EMR+ V+ N+VTY TL+ G CR +++ A ++V +M+ +GI PN I
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
YNT+IDG G+ + + P++VTY LV G+C+ GD GA+K++K M
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399
Query: 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300
RG PS TY F++ +E A+ L M E G PD TY +L+ C + ++
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQM 459
Query: 301 DLAIQVSKEMKCRGCDI-DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359
+ A ++ K M + C+ ++ +TM++ C+ A ++M + L P+ +++
Sbjct: 460 NEASRLFKSMVEKNCEPNEVIYNTMILGY-CKEGSSYRALKLLKEMEEKELAPNVASYRY 518
Query: 360 LNDEFKKRGMTALAQKLCNVM--SSVPRSMELLD--SRCKD 396
+ + K + A++L M S + S +L SR K+
Sbjct: 519 MIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKN 559
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 5.1e-39, P = 5.1e-39
Identities = 108/385 (28%), Positives = 191/385 (49%)
Query: 1 MIKVLAKAKEFDS--AWCLLLDKIG-GHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFE 57
+ +AK K+++ A C ++ G H + T I+I + R + A F
Sbjct: 94 LFSAIAKTKQYELVLALCKQMESKGIAHSIY------TLSIMINCFCRCRKLSYA---FS 144
Query: 58 FANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117
+ M ++ +F LL+ LC + RV A E + E+ PT+ N L+N
Sbjct: 145 TMGKI-MKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK--PTLITLNTLVN 201
Query: 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177
G + V DA M + PN VTYG ++ C+ + A+ L+++M + I+
Sbjct: 202 GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261
Query: 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237
+A+ Y+ +IDGL + G + + + ++TY +L+ G+C AG + +K+L
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLL 321
Query: 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297
+ MI R P+ T++ F K GK+ +A L ++M++ G P+ +TY+ L+ CKE
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKE 381
Query: 298 DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTF 357
++L+ AIQ+ M +GCD D+ T +LI+ C+ + D+ F +M RG++ + +T+
Sbjct: 382 NRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTY 441
Query: 358 KRLNDEFKKRGMTALAQKLCNVMSS 382
L F + G +A+KL M S
Sbjct: 442 NTLVQGFCQSGKLEVAKKLFQEMVS 466
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 107/350 (30%), Positives = 183/350 (52%)
Query: 24 GHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSGASLFEILLDSL 82
G+E PD V T L+ + R V A+ + MV+ + + ++DSL
Sbjct: 150 GYE-PDRV---TIGSLVNGFCRRNRVSDAVSLVD-----KMVEIGYKPDIVAYNAIIDSL 200
Query: 83 CKQGRVKAASEYFHKRKELDQSWA-PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT 141
CK RV A ++F KE+++ P V Y L+NG S DA R +M K+ +T
Sbjct: 201 CKTKRVNDAFDFF---KEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT 257
Query: 142 PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM 201
PNV+TY L++ + + +V A L +EM + I+P+ + Y+++I+GL R +E + M
Sbjct: 258 PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQM 317
Query: 202 MERFLVCEPG--PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYF 259
+ L+ G +V+Y +L+ G+CKA +E K+ + M RG + + TYN + F
Sbjct: 318 FD--LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 260 SKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319
+ G V+ A + +M G +PD TY+ILL LC +L+ A+ + ++M+ R D+D+
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDI 435
Query: 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369
T T +I +C+ K +EA + F + +GL P +T+ + +G+
Sbjct: 436 VTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFM6 | PP375_ARATH | No assigned EC number | 0.5496 | 0.9898 | 0.6511 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 396 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 59/263 (22%), Positives = 118/263 (44%), Gaps = 21/263 (7%)
Query: 134 EMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193
EM V NV T+G L++G R +V +A MR + ++P+ +V+N +I ++G
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556
Query: 194 R----FEEVSGMMERFLVCEP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPS 248
F+ ++ M P P +T +L+K AG ++ A ++ +M+ +
Sbjct: 557 AVDRAFDVLAEMKAE---THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 249 PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308
P Y S+ G + A+++Y M + G PD + + L+ + LD A ++ +
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRG 368
+ + +G + + + L+ + +A +ED+ L P T L
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL-------- 725
Query: 369 MTALAQKLCNVMSSVPRSMELLD 391
+TAL + + +P+++E+L
Sbjct: 726 ITALCEG-----NQLPKALEVLS 743
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 8e-17
Identities = 71/309 (22%), Positives = 128/309 (41%), Gaps = 12/309 (3%)
Query: 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWA-PTVRVYNILLNGWFRSKNVKDAERFW 132
L+ L+ + K G+V A E FH E+ + V + L++G R+ V A +
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFH---EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 133 LEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG--IEPNAIVYNTVIDGLV 190
MR +NV P+ V + L+ + VDRA ++ EM+ E I+P+ I ++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 191 EAG---RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP 247
AG R +EV M+ + + T YT V + GD + A I M +G P
Sbjct: 591 NAGQVDRAKEVYQMIHEYNI---KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 248 SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307
++ G ++ A + + + G ++Y L+ A+++
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 308 KEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKR 367
+++K + T LI LC + +A +M R GL P+ +T+ L +++
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 368 GMTALAQKL 376
+ L
Sbjct: 768 DDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 5e-16
Identities = 25/48 (52%), Positives = 37/48 (77%)
Query: 142 PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189
P+VVTY TL++GYC+ +V+ A++L EM+K GI+PN Y+ +IDGL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 3/220 (1%)
Query: 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137
L+ + G+V A E + E + P VY I +N + + A + +M+K
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTP--EVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 138 ENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197
+ V P+ V + LV+ +D+A ++++ RK+GI+ + Y++++ A +++
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257
+ E + PT+ T +L+ C+ L A ++L M G P+ TY+
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 258 YFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297
+ + ++L + E G P+ + + LC
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLR 801
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 74/327 (22%), Positives = 138/327 (42%), Gaps = 43/327 (13%)
Query: 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS---LCKQGRVKAASEYFH 96
I + G A+ FE L+ F AS ++ L+++ L VKA +
Sbjct: 94 IEKLVACGRHREALELFEI---LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV- 149
Query: 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156
+ P + N +L + + DA R + EM + N+ ++GT++ G
Sbjct: 150 ----ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVD 201
Query: 157 LRRVDRAIRLVKEMRKEGIEPNAIVYNTVID-----GLVEAGRFEEV----SGMME-RFL 206
A L +EM ++G + + ++ G AG+ +G++ F+
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
Query: 207 VCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT--YNYFFRYFSKFGK 264
C +L+ Y K GD+E A + M P TT +N ++ G
Sbjct: 262 SC----------ALIDMYSKCGDIEDARCVFDGM------PEKTTVAWNSMLAGYALHGY 305
Query: 265 VEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTM 324
E+A+ LY +M +SG + D+ T+ I+++I + L+ A Q + G +D+ +T
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 325 LIHLLCRMYKFDEASAEFEDMIRRGLV 351
L+ L + + ++A F+ M R+ L+
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNLI 392
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156
P V YN L++G+ + V++A + + EM+K + PNV TY L++G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 10/279 (3%)
Query: 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV-KAASEYFHK 97
LI A++G V+A F N + N + F L+D + G+V KA Y
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHT----FGALIDGCARAGQVAKAFGAYGIM 533
Query: 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN--VTPNVVTYGTLVEGYC 155
R ++ P V+N L++ +S V A EM+ E + P+ +T G L++
Sbjct: 534 RS---KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 156 RLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMV 215
+VDRA + + + + I+ VY ++ + G ++ + + P V
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKM 275
+++LV AGDL+ A +IL+ +G +Y+ S + A+ LY +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 276 IESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314
P T + L+ LC+ ++L A++V EMK G
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-10
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 212 PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK 261
P +VTY +L+ GYCK G +E A K+ M RG P+ TY+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 7e-10
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 139 NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171
+ P+VVTY TL++G CR RVD A+ L+ EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 8e-10
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296
P TYN + K GKVE+A+ L+ +M + G P+ TY IL+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 83/363 (22%), Positives = 144/363 (39%), Gaps = 44/363 (12%)
Query: 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRR------YARAGMVEAAIWTFEFA 59
AKA FD A CL + PD TF ++R AR V A + F F
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVY---TFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219
Query: 60 NNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ-SWAPTVRVYNILLNG 118
++D+V L+ K G V +A F + D SW N +++G
Sbjct: 220 LDVDVVN----------ALITMYVKCGDVVSARLVFDRMPRRDCISW-------NAMISG 262
Query: 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR----KEG 174
+F + + + MR+ +V P+++T T V C L RL +EM K G
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTI-TSVISACELL---GDERLGREMHGYVVKTG 318
Query: 175 IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGAS 234
+ V N++I + G + E + R + + V++T+++ GY K G + A
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSR-METK---DAVSWTAMISGYEKNGLPDKAL 374
Query: 235 KILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKIL 294
+ +M P T + G ++ + L+ G + + L+++
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
Query: 295 CKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY 354
K +D A++V + + D+ + T +I L + EA F M+ L P+
Sbjct: 435 SKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489
Query: 355 LTF 357
+T
Sbjct: 490 VTL 492
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 8e-08
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 282 PDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331
PD +TY+ L+ CK+ K++ A+++ EMK RG ++ T ++LI LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 177 PNAIVYNTVIDGLVEAGRFEEVSGM---MERFLVCEPGPTMVTYTSLVKGYCK 226
P+ + YNT+IDG + G+ EE + M++ + P + TY+ L+ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK---PNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-07
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA 179
VTY TL++G C+ RV+ A+ L KEM++ GIEP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 1e-06
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 212 PTMVTYTSLVKGYCKAGDLEGASKILKMM 240
P +VTY +L+ G C+AG ++ A ++L M
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 215 VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPS 248
VTY +L+ G CKAG +E A ++ K M RG P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 215 VTYTSLVKGYCKAGDLEGASKILKMMISRGF 245
VTY SL+ GYCKAG LE A ++ K M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 35 TFVILIRRYARAGMVE----AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKA 90
TF I+IR ++R ++E A LD+V N L+D K GR++
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN--------TALVDLYSKWGRMED 378
Query: 91 ASEYFHK--RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148
A F + RK L SW N L+ G+ A + M E V PN VT+
Sbjct: 379 ARNVFDRMPRKNL-ISW-------NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF- 429
Query: 149 TLVEGYCRLR-RVDRAIRLVKEM-RKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMER 204
V CR ++ + + M I+P A+ Y +I+ L G +E M+ R
Sbjct: 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 62/308 (20%), Positives = 116/308 (37%), Gaps = 20/308 (6%)
Query: 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106
G +E A+ E L + + D+ +LF LC+ R R
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFR-----LCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166
VR+ N +L+ + R + A + +M + ++ ++ LV GY + D A+ L
Sbjct: 120 -GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEALCL 174
Query: 167 VKEMRKEGIEPNAIVYNTVI---DGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223
M G+ P+ + V+ G+ + R EV + RF + +L+
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF---GFELDVDVVNALITM 231
Query: 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283
Y K GD+ A + M R + ++N + + G+ + + L+ M E PD
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343
+T ++ L ++ + G +D+ LI + + + EA F
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 344 DMIRRGLV 351
M + V
Sbjct: 348 RMETKDAV 355
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI 175
VTY +L+ GYC+ +++ A+ L KEM+++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 214 MVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP 247
+ TY +L+ KAGD + A +L+ M + G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-05
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177
+ TY L+ + D A+ +++EM+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 204 RFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG 263
RF PT+ T+ L+ + D++GA ++L+++ G Y +K G
Sbjct: 427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 264 KVEDAM-NLYRKMIESGYTPDRLTY 287
KV DAM ++ +M+ +G + T+
Sbjct: 487 KV-DAMFEVFHEMVNAGVEANVHTF 510
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 37/179 (20%)
Query: 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR-FEEVSGMM 202
VV L+E Y + + +D+A+ + + E + I + ++I GL R FE + +
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEAL--IF 477
Query: 203 ERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKI----LKMMI-SRGFLPSP-------- 249
R ++ P VT + + + G L +I L+ I GFLP+
Sbjct: 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537
Query: 250 -----------------TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291
++N + GK A+ L+ +M+ESG PD +T+ LL
Sbjct: 538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137
LLD + GR+ A F+ ++ SW NILL G+ A + M +
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSW-------NILLTGYVAHGKGSMAVELFNRMVE 582
Query: 138 ENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEPNAIVYNTVIDGLVEAGRFE 196
V P+ VT+ +L+ R V + + M ++ I PN Y V+D L AG+
Sbjct: 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642
Query: 197 EVSGMMER 204
E + +
Sbjct: 643 EAYNFINK 650
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 110 RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV 144
YN L++G ++ V++A + EM++ + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 76/353 (21%), Positives = 140/353 (39%), Gaps = 50/353 (14%)
Query: 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDSGASLFEILLDSLCKQGRVKAASE 93
TFV+++R A G A +V + F S A L+D K G ++ A
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-----LIDMYSKCGDIEDA-- 278
Query: 94 YFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153
R D T +N +L G+ ++A + EMR V+ + T+ ++
Sbjct: 279 ----RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 154 YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNT-VIDGLVEAGRFEEVSGMMERFLVCEPGP 212
+ RL ++ A + + + G P IV NT ++D + GR E+ + +R P
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRM----PRK 389
Query: 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272
++++ +L+ GY G A ++ + MI+ G P+ T+ G E ++
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449
Query: 273 RKMIES-GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR-----------GCDI--- 317
+ M E+ P + Y ++++L +E LD A + + + C I
Sbjct: 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN 509
Query: 318 -----------------DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH 353
L+ +L++L + EA+ E + R+GL H
Sbjct: 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283
TYN K G+VE+A+ L+++M E G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMR 136
P V YN L++G R+ V +A EM
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 286 TYHILLKILCKEDKLDLAIQVSKEMKCRGCDID 318
TY+ L+ LCK +++ A+++ KEMK RG + D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP 142
+ YN LL ++ + A EM+ + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 249 PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTP 282
TYN +K G + A+ + +M SG P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.2 bits (80), Expect = 0.004
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 174 GIEPNAIVYNTVIDGLVEAGRFEE 197
G++P+ + YNT+IDGL AGR +E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDE 25
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.78 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.68 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.66 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.63 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.63 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.62 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.61 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.6 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.57 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.52 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.51 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.51 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.5 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.5 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.4 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.39 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.37 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.28 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.27 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.16 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.15 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.14 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.13 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.09 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.07 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.07 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.04 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.88 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.83 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.63 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.6 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.54 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.54 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.52 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.46 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.44 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.39 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.38 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.35 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.29 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.29 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.21 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.14 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.12 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.12 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.1 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.09 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.09 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.06 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.02 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.82 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.67 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.54 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.47 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.37 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.34 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.25 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.14 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.97 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.95 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.74 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.64 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.56 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.22 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.9 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.6 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.58 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.58 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 95.57 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.55 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.48 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.34 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.32 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.27 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.23 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.19 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.15 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.13 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.97 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.91 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.91 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.89 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.6 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.34 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.31 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.22 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.12 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.94 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.92 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.88 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.77 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.7 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.68 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.52 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.51 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.38 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.38 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.18 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.1 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.93 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.87 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.69 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.48 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.15 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.13 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.09 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.89 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.8 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 91.75 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.53 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.5 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.45 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.14 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.02 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 91.0 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.82 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 90.68 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.63 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.61 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 90.5 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 90.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.84 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.79 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.78 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.69 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 89.6 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 89.59 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 89.13 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.99 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.77 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.52 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 88.5 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.44 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.25 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.76 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.67 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 87.28 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.05 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.04 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.7 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.46 | |
| PF13934 | 226 | ELYS: Nuclear pore complex assembly | 86.02 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 85.93 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.92 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.88 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.94 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.79 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.41 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.38 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.26 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.95 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.1 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.75 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 82.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.14 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 81.85 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 81.43 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 81.25 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.97 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.74 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 80.33 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.12 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=434.39 Aligned_cols=372 Identities=20% Similarity=0.302 Sum_probs=348.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
|.+.|.+++|..+|..+. .|+ ..+|+.++.+|++.|++++|.++|+.+.+. +..|+..+|+.++.+|++
T Consensus 416 ~~~~g~~~eAl~lf~~M~----~pd---~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~----Gl~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIR----NPT---LSTFNMLMSVCASSQDIDGALRVLRLVQEA----GLKADCKLYTTLISTCAK 484 (1060)
T ss_pred HHHCCCHHHHHHHHHHcC----CCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHh
Confidence 444444444444433322 145 779999999999999999999999999987 578999999999999999
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|++++|.++|++|... ++.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 485 ~G~vd~A~~vf~eM~~~--Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 485 SGKVDAMFEVFHEMVNA--GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred CcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999986 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 165 RLVKEMRK--EGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 165 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999987 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhh
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (396)
+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+++++|.+.+..++.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999987766654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=427.23 Aligned_cols=379 Identities=21% Similarity=0.256 Sum_probs=361.6
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
|+.+|++.|+++.|.++|..+.+.+..|+ ..+|+.++.+|++.|++++|.++|++|.+. +..||..+|+.++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD---~~tynsLI~~y~k~G~vd~A~~vf~eM~~~----Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKAD---CKLYTTLISTCAKSGKVDAMFEVFHEMVNA----GVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 47889999999999999999999888888 889999999999999999999999999987 56889999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCChhHHHHHHHHHHccC
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK--ENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 158 (396)
+|++.|++++|.++|+.|... +..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999886 8899999999999999999999999999999986 578999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 016027 239 MMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (396)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCchHHHH
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----R-------------------GMTALAQK 375 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~ 375 (396)
..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876532 1 23467999
Q ss_pred HHHHHhccchhhh
Q 016027 376 LCNVMSSVPRSME 388 (396)
Q Consensus 376 ~~~~~~~~~~~~~ 388 (396)
+|++|.+.+..|+
T Consensus 834 lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 834 VYRETISAGTLPT 846 (1060)
T ss_pred HHHHHHHCCCCCC
Confidence 9999999876655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=392.99 Aligned_cols=360 Identities=19% Similarity=0.243 Sum_probs=305.1
Q ss_pred hhhhhhccCchhHHHHHHHHhCCC-CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGH-EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
|..+.+.|++++|+++|..+...+ ..|+ ..+|..++.++.+.++++.|.+++..+.+. ++.|+..+++.++.
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~---~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~----g~~~~~~~~n~Li~ 166 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLP---ASTYDALVEACIALKSIRCVKAVYWHVESS----GFEPDQYMMNRVLL 166 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCcchHHHHHHHH
Confidence 567889999999999999887654 2455 789999999999999999999999999987 56889999999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
.|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999864 689999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
+.+.+++..+.+.|+.||..+++.++.+|.+.|++++|.++|+.| ..++..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888877 3457778888888888888888888888888
Q ss_pred HHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 016027 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (396)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 888888888888888888888888888888888888888788888888888888888888888888877753 5777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 78888888888888888888888887777788888888888888888888888888887765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=387.51 Aligned_cols=364 Identities=17% Similarity=0.238 Sum_probs=291.4
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--------------
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-------------- 66 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------- 66 (396)
|+..|.+.|+++.|.++|+++.+ |+ ..+|+.++.+|++.|++++|+++|++|.+.+..+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 46788899999999988877753 56 5579999999999999999999999887653211
Q ss_pred -----------------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH
Q 016027 67 -----------------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE 129 (396)
Q Consensus 67 -----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 129 (396)
+..++..+++.|+.+|++.|++++|.++|+.|.. +|..+||.++.+|.+.|++++|.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHH
Confidence 3455666777888888888888888888887754 47788888888888888888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 130 RFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--- 387 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--- 387 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888874
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCChhhHH
Q 016027 210 PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE-SGYTPDRLTYH 288 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 288 (396)
.+|..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+
T Consensus 388 -~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred -CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 4677788888888888888888888888888888888888888888888888888888888888865 47788888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRG 368 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 368 (396)
.++.+|++.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..+++.|.+.|
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCC
Confidence 8888888888888888877654 456788888888888888888888888888876543 224567888888888888
Q ss_pred CchHHHHHHHHHhccch
Q 016027 369 MTALAQKLCNVMSSVPR 385 (396)
Q Consensus 369 ~~~~A~~~~~~~~~~~~ 385 (396)
++++|.+++++|++.+.
T Consensus 543 ~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 543 RQAEAAKVVETLKRKGL 559 (697)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 88888888888877653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=394.01 Aligned_cols=364 Identities=16% Similarity=0.197 Sum_probs=270.3
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
|..|.+.|++++|+++|.++.+.+..|+ ..+|..++.+|.+.|+.+.|.+++..+.+. ++.|+..+|+.++.+
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd---~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~----g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPD---LMTITSVISACELLGDERLGREMHGYVVKT----GFAVDVSVCNSLIQM 332 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCccchHHHHHHHHH
Confidence 4445555555555555555555544554 445555555555555555555555555554 456777788888888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
|++.|++++|.++|+.|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 333 y~k~g~~~~A~~vf~~m~~------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMET------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHhcCCHHHHHHHHhhCCC------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 8888888888888887753 4777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|++|. .++..+|+.++.+|++.|+.++|..+|++|.
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888774 3566777777777777777777777777776
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC------------------------------CCChhhHHHHH
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGY------------------------------TPDRLTYHILL 291 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~ 291 (396)
. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+ .+|..+|+.++
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 5 3677777777666666555555555555555544443 45667777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 292 KILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMI-RRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 8888888888888888888888888888888888888888888888888888887 577888888888888888888888
Q ss_pred hHHHHHHHHHhcc
Q 016027 371 ALAQKLCNVMSSV 383 (396)
Q Consensus 371 ~~A~~~~~~~~~~ 383 (396)
++|.+++++|.-.
T Consensus 642 ~eA~~~~~~m~~~ 654 (857)
T PLN03077 642 TEAYNFINKMPIT 654 (857)
T ss_pred HHHHHHHHHCCCC
Confidence 8888888887533
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=383.63 Aligned_cols=362 Identities=18% Similarity=0.248 Sum_probs=297.4
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---------------
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV--------------- 65 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------- 65 (396)
|+..|.+.|+++.|.++|+++.+ |+ ..+|+.++.+|.+.|++++|+++|++|...+..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d---~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RD---LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CC---eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 35566777777777776665532 44 446777777777777777777777776654211
Q ss_pred ----------------cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH
Q 016027 66 ----------------KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE 129 (396)
Q Consensus 66 ----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 129 (396)
.++.++..+++.++.+|++.|++++|.++|++|.. ||..+||.++.+|.+.|++++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHH
Confidence 13456777788888889999999999999988864 57888999999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 130 RFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|.+.|++++|.++|++|.
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 016027 210 PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHI 289 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (396)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4688889999999999999999999999999989999999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 290 LLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 290 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||..++.+|.+.|+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 99999999999999999988864 4777888888888888888888888888875 477888888777776666666
Q ss_pred chHHHHHHHHHhccc
Q 016027 370 TALAQKLCNVMSSVP 384 (396)
Q Consensus 370 ~~~A~~~~~~~~~~~ 384 (396)
.+.+.+++..+.+.+
T Consensus 505 l~~~~~i~~~~~~~g 519 (857)
T PLN03077 505 LMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHhHHHHHHHHHhC
Confidence 666666666655443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-28 Score=234.30 Aligned_cols=359 Identities=13% Similarity=0.095 Sum_probs=179.5
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+...|++++|...|.+++.. .|+ +..++..++..+.+.|++++|...++++.... |.+...+..++..+
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTI--DPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-----PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchhHHHHHHHHH
Confidence 3455666666666666666653 232 24456666666666666666666666665543 44444555555555
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.++++.+.... +.+...|..++.++...|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554432 2244455555555555555555555555555442 1234445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|...++++.+.. +.+..++..++..+...|++++|.++++.+.+..+ .+...+..+...+...|++++|...|..+..
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555442 23344444455555555555555555555544432 2334444444445555555555555555444
Q ss_pred CCC--------------------------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 243 RGF--------------------------------LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 243 ~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
.+. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 321 2234444444444444445555555554444433 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
...+...|+ .+|+..++++....+. ++.++..+...+...|++++|.+.++++++.+. .+..++..+..++.+.|+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCH
Confidence 444444444 4444444444443222 334444444455555555555555555554432 2444555555555555555
Q ss_pred hHHHHHHHHH
Q 016027 371 ALAQKLCNVM 380 (396)
Q Consensus 371 ~~A~~~~~~~ 380 (396)
++|.+++++|
T Consensus 888 ~~A~~~~~~~ 897 (899)
T TIGR02917 888 AEARKELDKL 897 (899)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-27 Score=230.99 Aligned_cols=361 Identities=14% Similarity=0.121 Sum_probs=204.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|...+..+... .|+ +..++..++.++...|++++|.+.|+++.+.. |.+..++..++..+
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~ 509 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKK--QPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-----PDFFPAAANLARID 509 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHH
Confidence 3455566666666666665543 222 24466667777777777777777777666643 55555666666666
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.+.|+++....|. +..++..+...+.+.|++++|...++++...+. .+...+..++..+...|++++
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666654332 455566666666666666666666666655432 244455556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+..+ .+...+..+..++...|++++|..+++.+.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666665542 34555566666666666666666666666655433 2444555566666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...++.+...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 43 2244555555555555555555555555555543 2244445555555555555555555555555442 222444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 445555555555555555555555432 334445555555555555555555555554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=195.37 Aligned_cols=362 Identities=19% Similarity=0.128 Sum_probs=311.9
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
.+.+-..|++.+|+.+|+.+++. .|++ .++|..++.++...|+.+.|.+.|..+++.+ |...-+...++..
T Consensus 123 aN~~kerg~~~~al~~y~~aiel--~p~f--ida~inla~al~~~~~~~~a~~~~~~alqln-----P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIEL--KPKF--IDAYINLAAALVTQGDLELAVQCFFEALQLN-----PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhc--Cchh--hHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-----cchhhhhcchhHH
Confidence 46677899999999999999985 6663 5699999999999999999999999999985 6556667778888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...|++++|...|.++.+..|. =...|..|...+-..|+...|+..|++..+..+. -...|..|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 88899999999999999987654 3567999999999999999999999999886422 4678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|...|.+..... +.....+..+...|...|..+.|+..|++.++..+. -...|+.|..++...|+..+|.+.+.+..
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999988773 445677888888999999999999999999996553 46899999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
.... ....+.+.|...+...|.+++|..+|....+-... -...++.|...|.+.|++++|+..++++++..+. -...
T Consensus 348 ~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 348 RLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred HhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHH
Confidence 8743 36778999999999999999999999998875322 3457888999999999999999999999876322 3578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
++.+...|-..|+.+.|...+.+.+..+ |. ....+.|...|..+|+..+|+.-++...+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999998854 54 467889999999999999999999996554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-24 Score=195.22 Aligned_cols=369 Identities=14% Similarity=0.031 Sum_probs=291.5
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.|++++|+..|.+++.. .|+ ...|..++.+|...|++++|+..++++++.+ |.+..++..++.+|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-----p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPD---PVYYSNRAACHNALGDWEKVVEDTTAALELD-----PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHH
Confidence 4678899999999999999985 455 5589999999999999999999999999985 78889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccC------------------------------CCCCChHHHHHH-----------------
Q 016027 83 CKQGRVKAASEYFHKRKELDQ------------------------------SWAPTVRVYNIL----------------- 115 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~~~~l----------------- 115 (396)
...|++++|+..|..+...++ ...|........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999877655433211 100110000000
Q ss_pred ----------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 116 ----------LNGW------FRSKNVKDAERFWLEMRKEN-VTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 116 ----------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
+... ...+++++|.+.|++....+ ..| ....+..+...+...|++++|+..+++.++.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 0000 11257889999999998764 223 45678888889999999999999999999873 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
....|..+..++...|++++|...|+++++..+ .+..++..+...+...|++++|...|++..+... .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 466888889999999999999999999988755 3678899999999999999999999999998753 36777888899
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHh
Q 016027 258 YFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD------TSTMLIHLLCR 331 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 331 (396)
++.+.|++++|+..|++..+.. +.+...++.+..++...|++++|...|++........+.. .++.....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998764 3367888999999999999999999999998864432211 11222233445
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.|++++|..++++.+... +.+...+..+...+.+.|++++|++.|++..+...+
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 799999999999998864 334567889999999999999999999997665443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-24 Score=194.15 Aligned_cols=329 Identities=12% Similarity=0.047 Sum_probs=268.9
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+..+.+.|++++|+.++...+.. .|+ +..++..++.+....|++++|+..|+++.... |.++.++..++..
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~--~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-----P~~~~a~~~la~~ 119 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLT--AKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-----VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHh--CCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHH
Confidence 34567889999999999999886 444 25588888899999999999999999999975 8888899999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...|++++|...++++...+|+ +...+..++..+...|++++|...++.+...... +...+..+ ..+...|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHH
Confidence 99999999999999999987554 6778888999999999999999999988766433 33344333 3477889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH----HHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG----ASKIL 237 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~ 237 (396)
+|...++.+.+....++......+..++...|++++|+..++++.+..+. +...+..+...+...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999999887643344445556677888999999999999999987653 67788889999999999885 89999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 016027 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDI 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 317 (396)
+...+..+ .+...+..+...+...|++++|...++++...... +...+..+..++...|++++|...++++...++.
T Consensus 274 ~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~- 350 (656)
T PRK15174 274 RHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV- 350 (656)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 99988753 36778889999999999999999999999887533 5667777888999999999999999999876433
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 318 DLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
+...+..+..++...|++++|...|++..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344455677888999999999999998875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=189.05 Aligned_cols=296 Identities=16% Similarity=0.108 Sum_probs=173.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHH
Q 016027 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN---VVTYGTLVEGY 154 (396)
Q Consensus 78 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 154 (396)
.+..+...|++++|...|+++...+|. +..++..+...+...|++++|..+++.+...+..++ ...+..++..|
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344455556666666666666654332 445566666666666666666666666655421111 13455566666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCCh
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 230 (396)
...|++++|..+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.++.+. ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 66666666666666666542 33455566666666666666666666666655443321 11334455556666666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEM 310 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (396)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.+......++..++.+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666543 22344555666666666777777777666665432222345566666666777777777777766
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHhc
Q 016027 311 KCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK---RGMTALAQKLCNVMSS 382 (396)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 382 (396)
.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6553 34444566666667777777777777666654 4666666666655543 3466667777766654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=189.21 Aligned_cols=309 Identities=15% Similarity=0.139 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC--ChHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP--TVRVY 112 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ 112 (396)
.....+..+...|++++|+..|+++...+ |.+..++..++..+...|++++|..+++.+.... ...+ ....+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~ 110 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLAL 110 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence 45556777889999999999999999975 7778899999999999999999999999988742 1111 13567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN----AIVYNTVIDG 188 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 188 (396)
..++..+.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 889999999999999999999998763 34778999999999999999999999999988753322 1245567778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDA 268 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 268 (396)
+...|++++|...++++.+..+ .+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999988654 356678889999999999999999999999864333356788899999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHH
Q 016027 269 MNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR---MYKFDEASAEFEDM 345 (396)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 345 (396)
...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 99999998864 56666788999999999999999999999876 5788888888877764 56899999999999
Q ss_pred HHCCCCCCHH
Q 016027 346 IRRGLVPHYL 355 (396)
Q Consensus 346 ~~~~~~p~~~ 355 (396)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 9877776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-23 Score=191.33 Aligned_cols=361 Identities=12% Similarity=0.095 Sum_probs=292.8
Q ss_pred hhhccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
+.++.+++.---+|...-+... ..+ +.......+..+.+.|++++|..+++.+.... |.++.++..++.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~~l~~l~~~~l 87 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAG--NEQNIILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRDLLRRWVISPL 87 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcc--cccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchhHHHHHhhhHh
Confidence 4566666665444443332211 111 23456678888999999999999999998874 888888999999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 163 (396)
..|++++|...|+++...+|+ +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~---~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVC---QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999998765 67789999999999999999999999999864 33677888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
...++.+.... +.+...+..+ ..+...|++++|...++.+.+..+.++...+..+..++...|++++|...+..+.+.
T Consensus 164 ~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999887764 2333344333 347889999999999999888654444555566678889999999999999999987
Q ss_pred CCCCChhhHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 016027 244 GFLPSPTTYNYFFRYFSKFGKVED----AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
.. .+...+..+...+...|++++ |...++++.+..+ .+...+..+...+...|++++|...++++....+. +.
T Consensus 242 ~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~ 318 (656)
T PRK15174 242 GL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LP 318 (656)
T ss_pred CC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 53 367888889999999999986 8999999988753 36778889999999999999999999999987644 67
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY-LTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..+..+..++...|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788889999999999999999999998753 443 33444567889999999999999996554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=198.07 Aligned_cols=358 Identities=16% Similarity=0.106 Sum_probs=219.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch--h--------
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA--S-------- 73 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~-------- 73 (396)
.+...|++++|+..|+++++. .|+ +..++..++.++.+.|++++|+..|+++.+.. |.+. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~--~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRA--NPK--DSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHh
Confidence 456789999999999999985 454 37799999999999999999999999998864 2221 1
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 74 ----LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 74 ----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
........+.+.|++++|++.|+++...+|. +...+..+...+...|++++|++.|+++.+.... +...+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~ 424 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRG 424 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 1123356778899999999999999987654 6678888999999999999999999999876422 4445544
Q ss_pred HHHHH------------------------------------------HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 150 LVEGY------------------------------------------CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 150 l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+...+ ...|++++|++.+++.++.. +-+...+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444 23445555555555544442 223334444445
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---------hhHHHHHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSP---------TTYNYFFRY 258 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~ 258 (396)
.|.+.|++++|...++++.+..+. +...+..+...+...+++++|...++.+......++. ..+......
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 555555555555555555443221 2222222223333344444444443332211100000 001112233
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++....+. +...+..++..+...|++++|
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 4444455555544441 1234445566666777777777777777777766433 566777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 339 SAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 339 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+.++.+.+.. +.+..++..+..++...|++++|.++++++...
T Consensus 657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 77777666532 223445556666677777777777777776553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-22 Score=192.77 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=284.6
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHH------------HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTF------------VILIRRYARAGMVEAAIWTFEFANNLDMVKNFD 69 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 69 (396)
...+.+.|++++|+..|+++++.. |+......| ...+..+.+.|++++|+..|+++.... |
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P 382 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----N 382 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C
Confidence 457889999999999999999854 332111112 234667889999999999999999985 7
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH-----------------------------------
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI----------------------------------- 114 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 114 (396)
.+..++..++.++...|++++|++.|+++.+.+|. +...+..
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999987654 2333322
Q ss_pred -------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 115 -------LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 115 -------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+...+...|++++|++.|++.++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 233455679999999999999887543 66778889999999999999999999998763 445556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCch---------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTM---------VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
.+...+++++|+..++.+......+.. ..+..+...+...|+.++|..+++. .+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 778899999999999886543222221 1233456778899999999999872 24566778889999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|++++|+..|+++.+..+ .+...+..++..+...|++++|++.++.+....+. +...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999998753 36788899999999999999999999998876432 566777888999999999999
Q ss_pred HHHHHHHHHCCC--CC---CHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 339 SAEFEDMIRRGL--VP---HYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 339 ~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
.+++++++.... .| +...+..+...+...|+.++|+..|++..
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999987432 22 23456667888999999999999999964
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-21 Score=181.73 Aligned_cols=372 Identities=11% Similarity=-0.004 Sum_probs=270.9
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+....|+.++|++++.+.... .|. +..++..++..+...|++++|.+.|+++.... |.++.++..++..+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~--~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~la~~l 93 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH--MQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-----PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4566778888888888887752 222 25568888888888888888888888888764 67777788888888
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|+..++++....|. +.. +..+..++...|++++|+..++++.+..+. +...+..+..++...+..+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~---~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPD---KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 8888888888888888876443 555 777888888888888888888888876433 45555555655555555444
Q ss_pred H----------------------------------------------HHHHHHHHHc-CCCCCHH-HHH----HHHHHHH
Q 016027 163 A----------------------------------------------IRLVKEMRKE-GIEPNAI-VYN----TVIDGLV 190 (396)
Q Consensus 163 a----------------------------------------------~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~ 190 (396)
| ++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 4 4444444432 1122211 111 1133456
Q ss_pred HcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCCHH
Q 016027 191 EAGRFEEVSGMMERFLVCEPG-PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP---SPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 266 (396)
..|++++|+..|+++.+.+.. |+ .....+..+|...|++++|+..|+.+.+..... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887543 32 222335778999999999999999988753221 1234566677888999999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016027 267 DAMNLYRKMIESGY-----------TPD---RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 267 ~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (396)
+|..+++.+..... .|+ ...+..+...+...|++++|+.+++++....+. +...+..++..+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 99999999887531 122 124556777888999999999999999887544 788899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhhh
Q 016027 333 YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLD 391 (396)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 391 (396)
|++++|++.+++.+... +.+...+...+..+.+.|++++|..+++++.+..+....+.
T Consensus 407 g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 407 GWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999998864 33466677777788999999999999999877655554433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=173.64 Aligned_cols=337 Identities=16% Similarity=0.131 Sum_probs=278.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
.++|..++..+-..|++++|+..++.+.+.. |.....|..++.++...|+.+.|...|..+.+.+|. .....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-----p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~ 187 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-----PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCAR 187 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-----chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhh
Confidence 4678888888989999999999999988875 778888999999999999999999999888877543 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|+..+|...|.+.++.... -...|..|.-.+-..|+...|++.|++..+.+ +.-...|..|...|...
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEA 265 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHH
Confidence 44555556678899999998888876322 45678888888999999999999999998774 33466888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
+.++.|+..|.+.....+ ....++..+...|...|..+.|+..+++..+..+. -+..|+.+..++-..|++.+|.+.|
T Consensus 266 ~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999999887544 35677888888999999999999999999987433 5678999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP 352 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 352 (396)
.+.+..... .....+.|...+...|.+++|..+|....+..+. -...++.|...|-..|++++|+..+++.++ +.|
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 999887432 5667888999999999999999999999876433 456788999999999999999999999987 456
Q ss_pred C-HHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 353 H-YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 353 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+ ...++.+...|-..|+.+.|+..+.+.....+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 6 46788999999999999999999999766544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-21 Score=176.00 Aligned_cols=339 Identities=16% Similarity=0.041 Sum_probs=265.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+...+..+.+.|++++|+..|++++.. .|++..|..+..+|.+.|++++|++.++.+.+.+|. +...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHH
Confidence 4668899999999999999999999987 456788999999999999999999999999987654 6788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC----------------------------C-CChhHHHHHHH-------------
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENV----------------------------T-PNVVTYGTLVE------------- 152 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~-~~~~~~~~l~~------------- 152 (396)
+..++...|++++|+..|......+. . ++...+..+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 99999999999999876654432210 0 00000000000
Q ss_pred -----------------HH------HccCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 153 -----------------GY------CRLRRVDRAIRLVKEMRKEG-I-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 153 -----------------~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.. ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++.++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 11257889999999998764 2 33456678888889999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 016027 208 CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY 287 (396)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (396)
..+. ....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++..+... .+...+
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~ 436 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSH 436 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHH
Confidence 6543 46688889999999999999999999998875 33678899999999999999999999999988753 356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 016027 288 HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY------LTFKRLN 361 (396)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~ 361 (396)
..+..++.+.|++++|+..+++..+..+. ++..++.+..++...|++++|.+.|++.+......+. ..++...
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 88889999999999999999999876433 6888999999999999999999999999875321111 1122222
Q ss_pred HHHHHcCCchHHHHHHHHHhccchh
Q 016027 362 DEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
..+...|++++|.+.+++.....+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3344579999999999996655433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-19 Score=165.46 Aligned_cols=345 Identities=12% Similarity=0.053 Sum_probs=261.3
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+...|++++|..+|+++++. .|+ +..++..++.++...|++++|+..++++.... |.+.. +..++.+
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~--~P~--~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-----P~~~~-~~~la~~ 125 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSL--EPQ--NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-----PDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHH-HHHHHHH
Confidence 35678899999999999999885 454 36688899999999999999999999999874 77788 9999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH--------------------------------
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE-------------------------------- 129 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------------------------------- 129 (396)
+...|++++|+..++++.+..|+ +...+..+...+...+..++|+
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999987655 5666666666666555555444
Q ss_pred --------------HHHHHHHhC-CCCCChh-HH----HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 016027 130 --------------RFWLEMRKE-NVTPNVV-TY----GTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDG 188 (396)
Q Consensus 130 --------------~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 188 (396)
..++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 444444432 1122221 11 11133446779999999999999987532 222 22335778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---hhh
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGP---TMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----------LPS---PTT 251 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~ 251 (396)
+...|++++|+..|+++.+..+.. .......+..++...|++++|...++.+..... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999988754322 134566677788999999999999999987632 122 234
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (396)
+..+...+...|++++|+++++++.... +.+...+..++..+...|++++|++.++++....+. +...+...+..+..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 5667788899999999999999998874 346788889999999999999999999999987543 56777788888999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
.|++++|..+++++++. .|+......+-..+
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999999985 45554444443333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-18 Score=159.19 Aligned_cols=364 Identities=13% Similarity=0.068 Sum_probs=211.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
...+.|+++.|+..|+++++. .|+ +......++..+...|+.++|+..++++.... +........++..+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-----n~~~~~llalA~ly~ 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-----NISSRGLASAARAYR 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--Ccc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-----CCCHHHHHHHHHHHH
Confidence 345778888888888888874 344 11123377777778888888888888877321 333333444466777
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 163 (396)
..|++++|+++|+++.+.+|. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 788888888888888877655 4566667777778888888888888887765 34455554444444445566568
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH------------------------------------------
Q 016027 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM------------------------------------------ 201 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------ 201 (396)
++.++++.+.. +.+...+..+..++.+.|-...|.++
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 88888877763 33444444444444444433322222
Q ss_pred ------HHHHHhc-CCCCch-h----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 202 ------MERFLVC-EPGPTM-V----TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 202 ------~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 2222211 000111 1 111223355556666666666666666654434446666666666666666666
Q ss_pred HHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCh---hhHHHHHHHHH
Q 016027 270 NLYRKMIESGY-----TPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC-----------DIDL---DTSTMLIHLLC 330 (396)
Q Consensus 270 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~ 330 (396)
.+|+.+..... .++......|.-++...+++++|..+++.+.+..+ .|++ ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 66666654321 11222234556666666666666666666665211 1121 12233455556
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 331 RMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..|++.+|++.++++.... +-|......+...+...|++.+|...++.....
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 6666666666666665543 345556666666666666666666666555444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-18 Score=159.52 Aligned_cols=371 Identities=13% Similarity=0.025 Sum_probs=281.2
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+..+...|+.++|+..+++.+. |...+......++..+...|++++|+++|+++.+.. |.++.++..++..
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n~~~l~gLa~~ 145 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-----PTNPDLISGMIMT 145 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHH
Confidence 4567788999999999999983 332234556666889999999999999999999985 8888889899999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...++.++|++.++++...+ |+...+..++..+...++..+|++.++++.+..+. +...+..+..+..+.|-..
T Consensus 146 y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 146 QADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcH
Confidence 999999999999999998764 34555555555555567776799999999987533 5556555555555544332
Q ss_pred H------------------------------------------------HHHHHHHHHHc-CCCCCH-HHH----HHHHH
Q 016027 162 R------------------------------------------------AIRLVKEMRKE-GIEPNA-IVY----NTVID 187 (396)
Q Consensus 162 ~------------------------------------------------a~~~~~~~~~~-~~~~~~-~~~----~~l~~ 187 (396)
. |+.-++.+... +..|.. ..| .-.+-
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 2 33333333331 111221 111 23345
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhcc
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYFFRYFSKF 262 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 262 (396)
++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+..... +++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 6788899999999999999887665667888999999999999999999999977531 22344457888999999
Q ss_pred CCHHHHHHHHHHHHHCCC-------------CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016027 263 GKVEDAMNLYRKMIESGY-------------TPDR-LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHL 328 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (396)
+++++|..+++++.+..+ .||- ..+..++..+...|++.+|++.++++....+. |......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 999999999999987421 1222 23345667788999999999999999887655 99999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
+...|.+.+|...++...... +-+..+....+.++...|++++|..+.+++.+..+...
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 999999999999997776653 34566777888899999999999999998766544443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-19 Score=157.39 Aligned_cols=373 Identities=13% Similarity=0.065 Sum_probs=263.3
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
.++|...|++++|...|.+.++. .|+.+ .-.+..+++.+...|+++.|...|+++.+.. |.+..+...|+..
T Consensus 314 gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~-~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-----p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 314 GRSYHAQGDFEKAFKYYMESLKA--DNDNF-VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-----PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--CCCCc-cccccchhHHHHHhchHHHHHHHHHHHHHhC-----cchHHHHHHHHhH
Confidence 57889999999999999999886 34432 4578899999999999999999999999974 8888888888888
Q ss_pred HHHcC----ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhHHHHHHHH
Q 016027 82 LCKQG----RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR----KENVTPNVVTYGTLVEG 153 (396)
Q Consensus 82 ~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~ 153 (396)
|...+ ..+.|..++.+..... +.|...|-.+...+-..+-+. ++..|.... ..+-.+.+...|.+...
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 88775 5677777777777653 347777777777665544433 366665443 34445677788888888
Q ss_pred HHccCCHHHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------
Q 016027 154 YCRLRRVDRAIRLVKEMRKE---GIE------PNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-------------- 210 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 210 (396)
+...|++.+|...|...... ... ++..+-..+..++-..++++.|.+.|..+....+
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 88888888888888777654 111 2222233444555555566666666666554322
Q ss_pred -------------------CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHh----------
Q 016027 211 -------------------GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG-FLPSPTTYNYFFRYFS---------- 260 (396)
Q Consensus 211 -------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~---------- 260 (396)
..++..++.+...+.+..++..|.+-|..+.+.- ..+|+.+...|...|.
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 1233444445555555555555555555444331 1234444444444433
Q ss_pred --ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 261 --KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 261 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
..+..++|+++|.++++..+ -|...-+-+.-+++..|++.+|..+|.++.+.... ...+|-.+.++|..+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHH
Confidence 22346788889988888753 37777788888899999999999999999987443 667888999999999999999
Q ss_pred HHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 339 SAEFEDMIR-RGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 339 ~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
+++|+...+ .....+......|.+++.+.|.+.+|.+.+.......+..+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 999998876 33455677888999999999999999999988666544433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-18 Score=148.92 Aligned_cols=366 Identities=13% Similarity=0.134 Sum_probs=285.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.-+|++++|..++.++++. .|. ...+|.+|+.+|-+.|+.+++...+-.+-..+ |.+...|..+....
T Consensus 147 N~lfarg~~eeA~~i~~EvIkq--dp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-----p~d~e~W~~ladls 217 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQ--DPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-----PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--Ccc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHH
Confidence 4455569999999999999996 344 36799999999999999999999999998875 88889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH----HHHHHHHccC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG----TLVEGYCRLR 158 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~ 158 (396)
.+.|.+++|.-.|.++.+.+|. +...+-.-...|-+.|+...|.+.|.++.+..++.|..-+. ..+..+...+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997654 66666777888999999999999999999875433433333 3455677778
Q ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------------------
Q 016027 159 RVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-------------------------- 211 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------- 211 (396)
+-+.|++.++.....+ -..+...++.++..+.+...++.|............+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 8899999998887732 2456667888889999999999998887776651111
Q ss_pred -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 016027 212 -PTMVTYTSLVKGYCKAGDLEGASKILKMMISRG--FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYH 288 (396)
Q Consensus 212 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (396)
++..+ ..++-++......+....+...+.... +..+...|.-+..++...|++.+|+.+|..+......-+...|.
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 12222 122334444455555555555555554 44456788999999999999999999999998875555677899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR--------RGLVPHYLTFKRL 360 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l 360 (396)
.+.++|...|..++|.+.|+.++...+. +...-..|...+.+.|+.++|.+.++.+.. .+..|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 9999999999999999999999987543 677778888999999999999999998653 2345666666677
Q ss_pred HHHHHHcCCchHHHHHHHHHhc
Q 016027 361 NDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
...+.+.|+.++=+.....|..
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 7788899999886665555543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-16 Score=149.41 Aligned_cols=361 Identities=12% Similarity=0.076 Sum_probs=254.2
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+..+.++|+++-|+++ .+. .|. ......-.......+...++.+.++.+.+.. |.+......+...
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~-----~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-----~~~~~~l~q~~~~ 385 (987)
T PRK09782 320 LPVLLKEGQYDAAQKL-LAT-----LPA---NEMLEERYAVSVATRNKAEALRLARLLYQQE-----PANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHhccHHHHHHHH-hcC-----CCc---chHHHHHHhhccccCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHH
Confidence 4567778888866554 221 232 1122111112223467777777777777753 6677778888888
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC---hhHHHHH----------------------HHHHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN---VKDAERF----------------------WLEMR 136 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~ 136 (396)
..+.|+.++|.++|+......+...++......++..|.+.+. ..++..+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 8888999999999988877433333445555577777776655 2333222 22222
Q ss_pred hC-CC-CC--ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 016027 137 KE-NV-TP--NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP 212 (396)
Q Consensus 137 ~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 212 (396)
.. +. ++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|+++... .|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 11 23 56677777777776 7888899988877766 455544444455567899999999999987664 23
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK 292 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (396)
+...+..+..++.+.|++++|...+....+.+ +.+...+..+.......|++++|...+++..+.. |+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 44456677788888999999999999988764 2233334444444556699999999999988764 56778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchH
Q 016027 293 ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTAL 372 (396)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 372 (396)
++.+.|+.++|...++++....+. +...++.+..++...|++++|+..+++.++.. +-+...+..+..++...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999888654 77888888889999999999999999998854 3466778888889999999999
Q ss_pred HHHHHHHHhccchh
Q 016027 373 AQKLCNVMSSVPRS 386 (396)
Q Consensus 373 A~~~~~~~~~~~~~ 386 (396)
|+..+++.....+.
T Consensus 696 A~~~l~~Al~l~P~ 709 (987)
T PRK09782 696 TQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999997665443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-16 Score=148.41 Aligned_cols=358 Identities=12% Similarity=-0.009 Sum_probs=262.7
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
.+...+|.+.++.+.+. .|. +...+..+.-...+.|+.++|.++|+....... +...+..+...++..|.+.+.
T Consensus 355 ~~~~~~~~~~~~~~y~~--~~~--~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 355 TRNKAEALRLARLLYQQ--EPA--NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPY 428 (987)
T ss_pred cCchhHHHHHHHHHHhc--CCC--CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCc
Confidence 35566666677777774 232 255777788888899999999999998887421 112244455577777777765
Q ss_pred ---hHHHHHH----------------------HHHHhhccCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 016027 88 ---VKAASEY----------------------FHKRKELDQSWAP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKENV 140 (396)
Q Consensus 88 ---~~~A~~~----------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (396)
..++..+ ++.....-+..++ +...|..+..++.. +++.+|...+.+.....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 2333222 2222222222234 67788888888876 88889999888877653
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
|+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+..+. ....+..+
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~L 582 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWL 582 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 55544445556667899999999999987665 455555667778889999999999999999886542 33333344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (396)
.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++.....+ .+...+..+..++...|+.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 44555669999999999999986 45678889999999999999999999999988753 3667788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
++|+..++++.+..+. +...+..+..++...|++++|...+++.++.. |+ ..+.........+..+++.|.+-+++
T Consensus 660 eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 660 AQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999987654 78889999999999999999999999998753 44 34455566666777778888877776
Q ss_pred Hhcc
Q 016027 380 MSSV 383 (396)
Q Consensus 380 ~~~~ 383 (396)
.-..
T Consensus 737 ~~~~ 740 (987)
T PRK09782 737 RWTF 740 (987)
T ss_pred Hhhc
Confidence 5443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-17 Score=142.60 Aligned_cols=369 Identities=14% Similarity=0.101 Sum_probs=253.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-hhHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-ASLFEILLD 80 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 80 (396)
.+.|.-.|++..+..+...++....... .-...|+.++++|-..|++++|..+|.+..+.. +.+ ...+.-|++
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhH
Confidence 4556677899999998888887542111 113568899999999999999999999888864 222 334566888
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK----NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
.+.+.|+++.|...|++..+..|+ +..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-.
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~---~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPN---NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcc---hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 999999999999999998886554 6667777777776664 4567777777766653 3477888888877765
Q ss_pred cCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCch------hhHHHHHHH
Q 016027 157 LRRVDRAIRLVKEMR----KEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC---EPGPTM------VTYTSLVKG 223 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 223 (396)
..-+ .++.+|..+. ..+..+.+...|.+...+...|+++.|...|+..... ...++. .+--.+..+
T Consensus 427 ~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4443 3366665544 4455688899999999999999999999999988765 122222 122334555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC---------------------------------CChhhHHHHHHHHhccCCHHHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFL---------------------------------PSPTTYNYFFRYFSKFGKVEDAMN 270 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~ 270 (396)
.-..++.+.|.+.+..+.+..+. .++..++.+...+.....+..|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 55566667777777666654211 122333333333333344444444
Q ss_pred HHHHHHHC-CCCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 271 LYRKMIES-GYTPDRLTYHILLKILCK------------EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 271 ~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
-|..+.+. ...+|..+...|...|.+ .+..++|+++|.++++..+. |...-|-+.-+++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 33333322 112344444455554432 23467899999999887655 88888889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 338 ASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
|..+|.+..+... ....+|..+..+|..+|++..|+++|+...+.
T Consensus 665 A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 665 ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988543 34458889999999999999999999995443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-16 Score=135.09 Aligned_cols=337 Identities=12% Similarity=0.042 Sum_probs=265.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
......+..+...|++++|..++.++++.+ |.++..|..|+..|-..|+.+++...+-.+..++|+ |...|.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~ 211 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWK 211 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHH
Confidence 344455556666799999999999999986 888999999999999999999999999998888766 778999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYN----TVIDGL 189 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~ 189 (396)
.+.....+.|.+++|.-+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-+. ..++.+
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 3466666677888999999999999999999884333333333 345667
Q ss_pred HHcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------------------
Q 016027 190 VEAGRFEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF----------------------- 245 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 245 (396)
...++.+.|.+.++.....+ -..+...++.++..+.+...++.|............
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 77888899999988887632 234566788899999999999999988887776211
Q ss_pred ----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 016027 246 ----LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG--YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 246 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
.++..+ ..+.-++.+....+....+...+...+ +.-+...|.-+..++...|++.+|+.++..+......-+.
T Consensus 371 ~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 122222 122233444555555555555555555 3345677889999999999999999999999987555578
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
.+|-.+..+|...|.+++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 899999999999999999999999999853 3344556677788999999999999999876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-17 Score=134.44 Aligned_cols=367 Identities=13% Similarity=0.089 Sum_probs=215.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDF-VSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+.+.+.++|.+|++.|+-++..-+..+. .-...++.++..+.+.|+++.|+..|+.+... .|+..+-..|+-+
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~------~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE------APNFIAALNLIIC 318 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh------CccHHhhhhhhhh
Confidence 3456677777777777666664221110 00234555566677777777777777777765 4444444455556
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHH--------HHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCC
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRV--------YNILLNGWFRSK-----------NVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 142 (396)
+..-|+-++..+.|.++.... + .||..- -..|+.-..+.. +-++++-.--+++.--+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip-~-~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIP-G-EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCC-C-CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Confidence 666677777777777777652 2 232221 111221111111 1112221111222111222
Q ss_pred Chh-----HH----------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---------------
Q 016027 143 NVV-----TY----------------GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI--------------- 186 (396)
Q Consensus 143 ~~~-----~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------- 186 (396)
+-. +. ..-...+.+.|+++.|+++++-+.+..-+.-...-+.+-
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 210 00 001223567788888888877665543211111111110
Q ss_pred ---------------------HHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 016027 187 ---------------------DGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF 245 (396)
Q Consensus 187 ---------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (396)
+.....|++++|.+.|++.+..... .......+...+-..|+.++|++.|-.+... +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 1112246778888888887654332 2223333445667778888888888776654 2
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016027 246 LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTML 325 (396)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (396)
..+..+...+...|....++.+|++++.+.... ++-|+.....|...|-+.|+-..|.+.+-...+. ++-+..+...|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 336667777778888888888888888776554 4557778888888888888888887776655543 34477777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHhcc
Q 016027 326 IHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-KKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 383 (396)
..-|....-+++++..|++..- ++|+..-|..++..| .+.|++++|..+++.+.+.
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777777788888888877643 478888887776544 5678888888888776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-16 Score=134.09 Aligned_cols=286 Identities=12% Similarity=0.039 Sum_probs=209.7
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHH-HHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH--HHHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEIL-LDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY--NILLNGW 119 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~~l~~~~ 119 (396)
....|++++|.+.+.+..+. .+++.++..+ .....+.|+++.|..++.++.+.+ |+.... ......+
T Consensus 94 a~~eGd~~~A~k~l~~~~~~------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADH------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----DNDQLPVEITRVRIQ 163 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHH
Confidence 34468999999888876554 3334444444 444478899999999999987753 333222 2336678
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHc
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLVEA 192 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 192 (396)
...|++++|...++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999998887644 6778888889999999999999999999887643222 1333444444445
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
.+.+...++++.+... .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++++++.+..
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 5566677777766443 2346778888888999999999999999888874 4454322 233444568889999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+...+..+ -|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|..++++.+.
T Consensus 318 e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88887743 36667788888999999999999999999876 57888888899999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-16 Score=133.30 Aligned_cols=291 Identities=10% Similarity=-0.018 Sum_probs=199.6
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
....|+++.|.+.+.+..+..+. ....+-.....+.+.|+++.|.+.+.+..+....+...........+...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 34578888888888877664221 233444556777788888888888888776532222233444577778888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH-HHHHHH---HhcCChHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT-SLVKGY---CKAGDLEGASKIL 237 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 237 (396)
.|...++.+.+.. +-++.....+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888875 456677778888888888888888888888887653 322221 111111 2233333334455
Q ss_pred HHHHHCCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 238 KMMISRGF---LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT--Y-HILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 238 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
..+.+... +.++..+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 55444322 1377788888888889999999999998888864 33321 1 111122234577788888888887
Q ss_pred HcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 312 CRGCDIDL--DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 312 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76433 55 6677889999999999999999995444344688888889999999999999999999884
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-15 Score=121.24 Aligned_cols=369 Identities=18% Similarity=0.249 Sum_probs=226.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHH--HHHcCCHH-HHHHHHHHHhhccccc---------------
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRR--YARAGMVE-AAIWTFEFANNLDMVK--------------- 66 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~g~~~-~A~~~~~~~~~~~~~~--------------- 66 (396)
...+|.+..+.-+|+.+-..+.+. |...-..+.+. |....+.. .-.+.|-.+.+.+...
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~v---S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDV---SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 456788899988888877655432 35444444432 22222222 2223333333322111
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
..|..+.++..++.++++--..++|.+++.+.... ..+.+..+||.++.+-.-. .-.++..+|....+.||..|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHh
Confidence 25778899999999999999999999999998775 4456788888887654432 22778888988889999999
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhc----CCC----Cc
Q 016027 147 YGTLVEGYCRLRRVDR----AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE-VSGMMERFLVC----EPG----PT 213 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~ 213 (396)
+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+-++..+ |..++..+... ..+ .+
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 9999999999997764 56778888889999999999999988888777644 44444444321 111 23
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 016027 214 MVTYTSLVKGYCKAGDLEGASKILKMMISRG----FLPS---PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT 286 (396)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (396)
...|...+..|....+.+.|.++..-+.... +.|+ ..-|..+..+.+.....+.-...|+.+.-+-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4556666777777777777776655544321 1111 12234444455555555555666666555544555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------------------------
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGC--------------------------------------------------- 315 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------------------------- 315 (396)
...++++....|.++-.-++|..++..|.
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 55555555555555555555544443332
Q ss_pred ---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHH---HHHHHHHHcCCchHHHHHHHHHhc
Q 016027 316 ---DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG-LVPHYLTFK---RLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 316 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.......+.++..+.+.|..++|.+++..+.+.+ -.|-....+ .+++...+.+....|..+++-+..
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2233334555556666677777777776665432 122222333 444555566666666666666544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-16 Score=133.71 Aligned_cols=296 Identities=12% Similarity=0.002 Sum_probs=221.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+......|+++.|.+.+.+..+.. |.....+...+.++...|+++.|.+++.++.+..|+ +...........+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~-----~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~--~~l~~~~~~a~l~ 163 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHA-----AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN--DNILVEIARTRIL 163 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--CchHHHHHHHHHH
Confidence 444566899999999999887752 333444556678888999999999999998775332 2223444457888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH---HHcCCH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVY-NTVIDGL---VEAGRF 195 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~---~~~~~~ 195 (396)
...|+++.|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+ ..-..++ ...+..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998644 7778899999999999999999999999998744 33333 2222222 333344
Q ss_pred HHHHHHHHHHHhcCCC---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCCHHHHH
Q 016027 196 EEVSGMMERFLVCEPG---PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT---YNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 196 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~ 269 (396)
+...+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+... +... ...........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHH
Confidence 4444566655554332 3778889999999999999999999999999743 3331 122222234457888999
Q ss_pred HHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 270 NLYRKMIESGYTPDR--LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+.++...+... -|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 320 ~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988887632 244 566788999999999999999999655544578888899999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-15 Score=131.45 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=223.0
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH--HHHHHHHccCCH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRV-YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG--TLVEGYCRLRRV 160 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 160 (396)
..|+++.|.+.+....... ++... |........+.|+++.|.+.+.++.+. .|+..... .....+...|++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~----~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA----EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 4699999998888765531 12333 334455568899999999999999875 44543322 446788999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhcCChHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-------VTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a 233 (396)
+.|...++++.+.. +-++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999885 557788889999999999999999999999987664322 1333444444445556667
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 234 SKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.++++.+.+. .+.++.....+...+...|+.++|.+.+++..+. .+++... ++.+....++.+++.+..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 7777776554 3457888999999999999999999999998885 4555332 233344569999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 314 GCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.+. |+..+..+...+.+.+++++|.+.|+...+. .|+..++..+..++.+.|+.++|..++++-..
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 654 7888999999999999999999999999985 68999999999999999999999999998544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=146.63 Aligned_cols=263 Identities=16% Similarity=0.174 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.++..+.+.|++++|++++.+..... ..+.++..|..++......++++.|.+.++++...++. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~---~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI---APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc---cccccccccc
Confidence 56888888899999999886543321 01556677777777888888899999999988876443 4556666766
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 196 (396)
. ...+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 68888899988888776542 466677778888888889999888888877543 3456777888888888899999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 197 EVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
+|++.+++.++..|. +......++..+...|+.+++..++....+.. +.++..+..+..++...|++++|..+|++..
T Consensus 164 ~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999998887553 67778888888888888888888888877764 4466777888888888899999999999888
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 277 ESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
+.+ +.|+.....+..++...|+.++|.++.+++..
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT-----------------
T ss_pred ccc-cccccccccccccccccccccccccccccccc
Confidence 764 33778888888888899999999888877654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-16 Score=125.84 Aligned_cols=363 Identities=12% Similarity=0.049 Sum_probs=242.0
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC--------CCCchhHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN--------FDSGASLF 75 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~ 75 (396)
.+.+.|+++.|+.-|+.+++. .|+ ..+-..|+-++.-.|+.++..+.|.+++......+ -.|+....
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn---~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APN---FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--Ccc---HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 367889999999999999985 677 44556677777789999999999999988654321 01111111
Q ss_pred HHHH-----HHHHHcCChHHHHHHHHHH----------------------hhccCCCCCChHHHHHHHHHHHhcCChhHH
Q 016027 76 EILL-----DSLCKQGRVKAASEYFHKR----------------------KELDQSWAPTVRVYNILLNGWFRSKNVKDA 128 (396)
Q Consensus 76 ~~l~-----~~~~~~~~~~~A~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 128 (396)
+..+ .-+.+.++ ..|.+.+-.. .+.....+.-...-..-..-+.+.|+++.|
T Consensus 360 ~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 1111 11111111 1111111100 000000011111112223334555666665
Q ss_pred HHHHHHHHhCCCC------------------------------------CChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 129 ERFWLEMRKENVT------------------------------------PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 129 ~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
+++++-+.+..-+ -+......-.+.....|++++|.+.|++.+.
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 5555544332111 1111222222223346889999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 173 EGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
....-. .....+.-.+...|+.++|+..|-++... ...+..+...+.+.|-...+..+|++++.+.... ++.|+...
T Consensus 519 ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 642222 22233344577889999999999888665 2357788888999999999999999999998876 56689999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-Hh
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL-CR 331 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 331 (396)
+.|...|-+.|+-.+|.+.+-+--.. ++-+..+...|...|....-+++++.+|++..- +.|+..-|..++..| .+
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999987665443 456888999999999999999999999998764 478999998877655 56
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 332 MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 332 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
.|++.+|..++++..++ ++-|...+..|++.+...|.. ++.++-+++
T Consensus 673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 89999999999998764 677888899999998888753 344444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=143.48 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=113.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
.+...+.+.|++++|++++....... ..+.+...|..+...+...++++.|...|+++...+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 66888999999999999996544321 01235667777777888899999999999999887544 66677777777 78
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHH
Q 016027 157 LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASK 235 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 235 (396)
.+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999998887665 3566777888888999999999999999977543 24577788889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016027 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (396)
.+++..+..+. +......++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|..++++..+..+
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999987433 67888899999999999999888888877764 44667788899999999999999999999988754
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 316 DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
. |+.+...+..++...|+.++|.++..+...
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 889999999999999999999999887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-16 Score=134.22 Aligned_cols=288 Identities=15% Similarity=0.087 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhH
Q 016027 48 MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKD 127 (396)
Q Consensus 48 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (396)
+..+|+..|.+.... ++....+...++.+|...+++++|.++|+.+....|-...+.++|.+.+-.+-+. -+
T Consensus 334 ~~~~A~~~~~klp~h-----~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-----HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VA 405 (638)
T ss_pred HHHHHHHHHHhhHHh-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HH
Confidence 456677777764443 2444466666777777777777777777777776665555666666665433221 11
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 128 AERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
---+-+.+.... +-.+.+|.++.++|.-.++.+.|++.|++.++.+ +-...+|+.+..-+....++|.|...|+..+.
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 111122222221 2255677777777777777777777777766652 22556666666666666677777777776655
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 016027 208 CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY 287 (396)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (396)
..+ ..-.+|..+...|.+.++++.|+-.|+.+.+.++. +......+...+.+.|+.++|+++++++...+.. |+..-
T Consensus 484 ~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 433 23445555666677777777777777776665433 5555666666666677777777777776665433 44444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 288 HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
...+..+...++.++|+..++++++.-++ +..++..+...|.+.|+.+.|+.-|.-+.+.+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 44455556666777777777776665322 55566666666777777777766666665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-15 Score=116.16 Aligned_cols=291 Identities=14% Similarity=0.131 Sum_probs=155.0
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhc
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRS 122 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 122 (396)
-.++.++|++.|-.+.+.+ |...++...|++.+-..|..++|+.+.+.+... |+..-+ ......|..-|...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh
Confidence 3455666666666666643 555556666666666666666666666665543 221111 12234455556666
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN----AIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 198 (396)
|-++.|+.+|..+.+.+. --..+...|+..|-...+|++|++.-+++.+.+-.+. ...|--+...+....+++.|
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 666666666666655432 2344555666666666666666666666655542222 12334455555555666666
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
..++.+..+.+++ .+.+--.+...+...|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666655432 333444455566666666666666666666554444455566666666666666666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHH
Q 016027 279 GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR---MYKFDEASAEFEDMIR 347 (396)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 347 (396)
.. ....-..+..........+.|...+.+-... +|+...+..++..-.. .|...+-+..+++|+.
T Consensus 279 ~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 NT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 32 2222233333333334444444444444433 4566666666654432 2334445555555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-14 Score=120.17 Aligned_cols=366 Identities=13% Similarity=0.008 Sum_probs=258.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.|+|++|++.|..++.. .|++ +..|.....+|...|+|++.++.-.++.+.+ |....++..-..++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~e--piFYsNraAcY~~lgd~~~Vied~TkALEl~-----P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDE--PIFYSNRAACYESLGDWEKVIEDCTKALELN-----PDYVKALLRRASAH 193 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCC--chhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-----cHHHHHHHHHHHHH
Confidence 4577899999999999999986 4542 3378899999999999999999999999986 77777888888888
Q ss_pred HHcCChHHHHHHHHH-------------------------------HhhccCCCCCChHHHHHHHHHHHh----------
Q 016027 83 CKQGRVKAASEYFHK-------------------------------RKELDQSWAPTVRVYNILLNGWFR---------- 121 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~---------- 121 (396)
-..|++++|+.=..- +....+..-|+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 888888876542110 111112233444333333333211
Q ss_pred ---------------cC---ChhHHHHHHHHHHhC---CCCCC---------hhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 122 ---------------SK---NVKDAERFWLEMRKE---NVTPN---------VVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 122 ---------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
.+ .+..|...+.+-... ....+ ..+.......+.-.|+.-.|..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 122222222221110 01111 1122222233444578888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 016027 172 KEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT 251 (396)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (396)
+....+ ...|.-+..+|....+.++..+.|....+.++. ++.+|..-...+.-.+++++|..-|++.++..+. +...
T Consensus 354 ~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 354 KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 875332 233677777899999999999999999988764 7778888888888899999999999999987533 6667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CChhhHHH
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-------IDLDTSTM 324 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~ 324 (396)
|..+.-+..+.+.+++++..|++..+. ++--+..|+.....+...++++.|.+.|+..++.... +.+.+...
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 777777778889999999999998886 4446788999999999999999999999998876332 22223333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 325 LIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
++..- -.+++..|..++++.++.+. -....+..|...-.+.|+.++|+++|++-...
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33222 34899999999999988652 34567889999999999999999999985443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-14 Score=113.15 Aligned_cols=290 Identities=17% Similarity=0.148 Sum_probs=230.6
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHccCCH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPN--VVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~ 160 (396)
-.++.++|.+.|-++.+.++. +..+.-+|.+.|-+.|..+.|+++...+..+. .+.+ ......|.+-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 457899999999999986544 67777889999999999999999999998762 1111 23456678889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhcCChHHHHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYCKAGDLEGASKI 236 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 236 (396)
+.|..+|..+.+.| ..-......++..|-...+|++|+++-+++.+.+.++. ...|.-+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999875 44566788899999999999999999999988776543 24566777777788899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 016027 237 LKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 316 (396)
+.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999987544 6666777888999999999999999999998766667788899999999999999999999998763
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCchHHHHHHHHHhc
Q 016027 317 IDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFK---KRGMTALAQKLCNVMSS 382 (396)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 382 (396)
++...-..+........-.+.|...+.+-+.. +|+...+..++..-. .-|...+....++.|..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 34445555555555555667777776666654 699999999998664 34556666677777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-16 Score=131.12 Aligned_cols=288 Identities=16% Similarity=0.119 Sum_probs=228.7
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHHHccCCHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN---VTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
-+..+|+..|.+.....++ +..+...+..+|...+++++|.++|+.+.+.. +. +...|.+.+.-+-+ .-+
T Consensus 333 y~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-~meiyST~LWHLq~---~v~ 405 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-GMEIYSTTLWHLQD---EVA 405 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-chhHHHHHHHHHHh---hHH
Confidence 3578899999986654333 44667788999999999999999999998752 22 56677776654322 222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
---+-+.+.+.. +..+.+|-++.++|.-+++.+.|++.|++..+.++ ....+|+.+..-+....++|.|...|...+.
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 122334444443 66789999999999999999999999999998644 2778999999999999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.... +-.+|--+...|.+.++++.|+-.|+++.+-++. +.+....+...+.+.|+.++|+++++++....+. |+..-
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 5332 4445556778899999999999999999987643 6777788888999999999999999999988766 66666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
-.-+..+...+++++|+..++++.+. .|+ ...+..+...|.+.|+.+.|+.-|.-+.+.++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66778888899999999999999884 454 5567788889999999999999999887765543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-13 Score=117.73 Aligned_cols=363 Identities=12% Similarity=0.055 Sum_probs=219.0
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
..|-.-.+..+....+.-+.... --..+|..-.+.|.+.+.++-|..+|..+++. +|.+..+|......--..|
T Consensus 491 ~agsv~TcQAIi~avigigvEee-d~~~tw~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEE-DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccc-hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcC
Confidence 33444555555555554433211 01346666666666666666666666666665 2555566666665555566
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 166 (396)
..++-..+|+++...- +.....|...+..+...|+...|..++....+.... +...|..-+..-....++++|..+
T Consensus 565 t~Esl~Allqkav~~~---pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQC---PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 6666666666665532 224445555555555666666666666666655433 555666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 167 VKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
|.+.... .|+..+|.--+...--.+..++|++++++.++.-+ .-...|..+.+.+-+.++.+.|...|..-.+. ++
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 6655543 44555555545444455666666666666665422 23445555666666666666666666555554 23
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------
Q 016027 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG------------ 314 (396)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------ 314 (396)
.....|..+...-.+.|++-.|..++++.+-.++. +...|...+++-.+.|+.+.|..+..+++..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW 795 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence 34445555555555556666666666665555433 55556666666666666666555544443210
Q ss_pred -----------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 016027 315 -----------------CDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 315 -----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (396)
..-|+.+.-.+...|....++++|.+.|.+.++.+ +.+-.+|.-+..-+.+.|.-++-.+++
T Consensus 796 le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred hccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 23366777777888888889999999999998865 345568888888889999888888888
Q ss_pred HHHhccch
Q 016027 378 NVMSSVPR 385 (396)
Q Consensus 378 ~~~~~~~~ 385 (396)
.+.....+
T Consensus 875 ~~c~~~EP 882 (913)
T KOG0495|consen 875 KKCETAEP 882 (913)
T ss_pred HHHhccCC
Confidence 88766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-14 Score=112.62 Aligned_cols=287 Identities=12% Similarity=0.078 Sum_probs=160.1
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
..|+|.+|.+...+..+.. +...-.|..-+.+--..|+.+.+-.++.++.+. ...++....-+........|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~-----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhCCC
Confidence 3566666666666655542 222233444444455556666666666666554 122444555555566666666
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHH
Q 016027 125 VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 197 (396)
++.|..-.+.+.+.+.. ++.......++|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.
T Consensus 169 ~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 66666666666655433 5555666666666666666666666666666543332 344555554444444444
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
-...|+..... ...++..-.+++.-+.++|+.++|.++.++..+.+..|. . ...-.+.+.+++..-.+..++..+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHH
Confidence 44455544332 223445555566666666666666666666666544433 1 112233455555555555555444
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 278 SGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.. +-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|..+.++.+.
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 42 224456666666666666666666666655544 45666666666666666666666666666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-13 Score=110.97 Aligned_cols=368 Identities=13% Similarity=0.053 Sum_probs=220.6
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
+..+...|..++++++.. -|. + ...|...+.+--..|+..-|.++|++-... .|+..+|...+..-.+.+
T Consensus 119 knk~vNhARNv~dRAvt~--lPR-V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w------~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTI--LPR-V-DQLWYKYIYMEEMLGNIAGARQIFERWMEW------EPDEQAWLSFIKFELRYK 188 (677)
T ss_pred hhhhHhHHHHHHHHHHHh--cch-H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhh
Confidence 445555566666555553 222 1 345555555555556666666666655554 455555666666655666
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-CCChhHHHHHHHHHHccCCHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE-NV-TPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.++.|..++++..-. .|++..|-..+..-.++|+...+..+|+...+. |- ..+...+.+....-.....++.|.
T Consensus 189 eieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar 264 (677)
T KOG1915|consen 189 EIERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERAR 264 (677)
T ss_pred HHHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655432 255555555555555556555555555555443 10 001122222222222223333333
Q ss_pred HHHHHHH--------------------------------------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 016027 165 RLVKEMR--------------------------------------------KEGIEPNAIVYNTVIDGLVEAGRFEEVSG 200 (396)
Q Consensus 165 ~~~~~~~--------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 200 (396)
-+|+-.+ +.+ +.|..+|--.++.-...|+.+...+
T Consensus 265 ~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 265 FIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHH
Confidence 3333322 222 3455666666666677778888888
Q ss_pred HHHHHHhcCCCCchh-hHHHH--------HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH----HhccCCHHH
Q 016027 201 MMERFLVCEPGPTMV-TYTSL--------VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY----FSKFGKVED 267 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~l--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 267 (396)
+|++++..-++.+.. .|.-. +-.-....+.+.+.+++....+. ++....||..+--. -.++.+...
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHH
Confidence 888877653321111 11111 11112456777778888777774 34445555544333 346677888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
|.+++...+. ..|-..+|...|..-.+.++++.+..++++.++-++. +..+|......-...|+.+.|..+|+-.++
T Consensus 423 ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 423 ARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8888877654 4678888888888888889999999999999987755 778888888888888999999999998887
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhhhhh
Q 016027 348 RGL-VPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDSR 393 (396)
Q Consensus 348 ~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 393 (396)
... ......|.+.|+--...|.++.|..+++++........+.-|+
T Consensus 500 qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 500 QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 431 2223456677776778999999999999976655444444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-14 Score=115.41 Aligned_cols=352 Identities=12% Similarity=0.077 Sum_probs=234.6
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhH--HHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASL--FEILLDSL 82 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 82 (396)
+.+.|....|...|...+.. .|- ...+|..|..... +. +........ .+.+... =..+..++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~--~P~--~W~AWleL~~lit---~~----e~~~~l~~~-----l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR--YPW--FWSAWLELSELIT---DI----EILSILVVG-----LPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc--CCc--chHHHHHHHHhhc---hH----HHHHHHHhc-----CcccchHHHHHHHHHHH
Confidence 45678888899888887763 343 2445655554432 22 222222221 1322121 22355666
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHHHHHHHHHHccCCH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 160 (396)
....+.+++..-.+..... |++-+...-+..+.+.....++++|+.+|+++.+..+- -|..+|..++-.--....+
T Consensus 238 ~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 6667778887777777665 54445544555556666778889999999888876211 1456666665442221111
Q ss_pred HHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 161 DRAIRLVK-EMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 161 ~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
.++- ...+.+ +--+.|...+.+.|.-.++.++|...|++.++.++. ...+|+.+..-|....+...|++.++.
T Consensus 316 ----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 ----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred ----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1111 111111 334567777888888888888888888888887664 567888888888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 016027 240 MISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
.++.++. |-..|-.+.++|...+.+.=|+-+|++..... +-|+..|..|..+|.+.++.++|++.|......|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 8887544 77888888888888888888888888888764 337788888888888888888888888888876633 66
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIR----RGLV-PH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..+..|...|-+.++..+|...|++.++ .|.. |. .....-|..-+.+.+++++|..+......-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 7888888888888888888888887665 2322 21 122223455667788888887766665443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-13 Score=106.69 Aligned_cols=299 Identities=13% Similarity=0.129 Sum_probs=239.8
Q ss_pred HHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 77 ILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 77 ~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
.+..+..+ .|+|.+|++...+..+. +.. ....|..-+.+.-+.|+.+.+-.++.+.-+....++.....+..+..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~--~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEH--GEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc--Ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 34444443 69999999999997765 322 35567777788889999999999999998874466777788888999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhc
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-------VTYTSLVKGYCKA 227 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 227 (396)
...|++..|..-++.+.+.+ +-++........+|.+.|++.....++..+.+.+.-.+. .+|..++.-....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999886 567788899999999999999999999999998775443 4567777766666
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
+..+.-...++..... ...++..-..++.-+...|+.++|.++..+..+.+..|. .. ..-.+.+.++.+.-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHH
Confidence 6666666677776554 455677888889999999999999999999998866554 22 223456778888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 308 KEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
+...+..+. ++..+.+|...|.+.+.|.+|...|+..++. .|+..+|..+..++.+.|+..+|..+.++....-.++
T Consensus 318 e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 777765433 6789999999999999999999999988774 7999999999999999999999999999865544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-13 Score=110.77 Aligned_cols=329 Identities=12% Similarity=0.010 Sum_probs=240.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...++..+..+.+.|..+.|++.|......- |-.=.+|..|.. -..+.+.+..+...+... .....=
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~---lit~~e~~~~l~~~l~~~-----~h~M~~ 230 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSE---LITDIEILSILVVGLPSD-----MHWMKK 230 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHH---hhchHHHHHHHHhcCccc-----chHHHH
Confidence 5567777888889999999999999887752 444334444333 333444433332221110 011111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI--EPNAIVYNTVIDGLV 190 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 190 (396)
--+..++....+.+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 224456666678888888888888888776666666666677778899999999999988731 12566777666 33
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 016027 191 EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMN 270 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 270 (396)
+..+-. +..+.+-.-.-.+.-+.|...+.+.|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|..
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 332222 112211111112334568888899999999999999999999988644 67788888899999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 016027 271 LYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGL 350 (396)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (396)
-|+.+++-++ -|...|..|.++|.-.+...=|+-.|+++....+. |+..|.+|..+|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 9999998763 48889999999999999999999999999887544 88999999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 351 VPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 351 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+...+..|.+.|.+.++.++|...+++...
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33667888999999999999999999988655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-13 Score=109.71 Aligned_cols=308 Identities=13% Similarity=0.142 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
.+++..+|.++++--..+.|.+++++..... ...+..+|+.++.+-.- ....++..+|... ...||..++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k----~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq--km~Pnl~Tf 276 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAK----GKVYREAFNGLIGASSY----SVGKKLVAEMISQ--KMTPNLFTF 276 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhh----heeeHHhhhhhhhHHHh----hccHHHHHHHHHh--hcCCchHhH
Confidence 5589999999999999999999999888763 36777888888876543 3337788888877 788999999
Q ss_pred HHHHHHHHhcCChhH----HHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH-HHHHHHHHHHc--C-----C-CCCH
Q 016027 113 NILLNGWFRSKNVKD----AERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR-AIRLVKEMRKE--G-----I-EPNA 179 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~-----~-~~~~ 179 (396)
|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..++..+.+.++..+ +..++.++... | + +.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56778899999999999999999999998888755 55555555442 2 1 2244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 180 IVYNTVIDGLVEAGRFEEVSGMMERFLVCE----PGPT---MVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 180 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
..|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...++.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556677777888888777777655443211 1111 122344444555555555555666666555445555555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC-----------------------------------------------------
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESG----------------------------------------------------- 279 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------------------------------------- 279 (396)
..++++....+.++-.-+++.++...|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555555554444444444333332221
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHH---HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 016027 280 -YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-IDLDTST---MLIHLLCRMYKFDEASAEFEDMIRRGL 350 (396)
Q Consensus 280 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~ 350 (396)
........+.++-.+.+.|..++|.+++..+.+.+-+ |.....+ .++..-...++...|..+++-|...+.
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1122333455566677899999999999999665432 3334444 566677788899999999999977653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-13 Score=109.09 Aligned_cols=357 Identities=13% Similarity=0.111 Sum_probs=251.6
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
++++..|..+|++++... ..+ ...|...+.+-.++.+...|..+++++... +|.-...|...+..--..|+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~---itLWlkYae~Emknk~vNhARNv~dRAvt~-----lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRN---ITLWLKYAEFEMKNKQVNHARNVWDRAVTI-----LPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-ccc---chHHHHHHHHHHhhhhHhHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHhcc
Confidence 567889999999999843 223 668999999999999999999999999986 47778889988888889999
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLV 167 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 167 (396)
+..|.++|++.... .|+...|++.+..-.+.+.++.|..+|+..+- +.|+..+|.-..+.-.+.|....+..+|
T Consensus 157 i~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 157 IAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999998854 68999999999999999999999999999876 4689999999999999999999999999
Q ss_pred HHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------------------------------
Q 016027 168 KEMRKE-GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG---------------------------------- 211 (396)
Q Consensus 168 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------- 211 (396)
+...+. |- ..+...+.++...-.++..++.|.-+|+-.++.-+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 988775 21 112233444444444566667776666655543221
Q ss_pred ---------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh-------hHHH---HHHHHhccCCHHHHHHHH
Q 016027 212 ---------PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT-------TYNY---FFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 212 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~---l~~~~~~~~~~~~a~~~~ 272 (396)
.|-.+|--.+..-...|+.+...++++..+.. ++|-.. .|.. .+-.-....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23344444555555556666666666666654 233111 1111 111112345666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 273 RKMIESGYTPDRLTYHILLKI----LCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
+..++. ++....||.-+--. -.++.++..|.+++..++. .-|-..+|...|..-.+.+.++....++++.++.
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 666553 23333444433222 2345667777777776653 3566777777777777888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 349 GLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 349 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
+ +-+..+|......-...|+++.|..+|+-..+.|
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 5 4466777777777777888888888888776655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-12 Score=111.44 Aligned_cols=345 Identities=10% Similarity=0.041 Sum_probs=225.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
.+|...+..--.+|+.+....++.+....-...|+..+...|..=...|-..|..-....+..........-..-..+|+
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 34444444444444444444444433332222233333344444444444444444444444443332111111234555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
.-...|.+.+.++-|..+|...++. .+-+...|......--..|..++...+++++... ++.....|......+-..|
T Consensus 521 ~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence 5556666666666666666666654 2334555665555555566777777777777766 2334445555556666778
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYR 273 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (396)
+...|..++.++.+..+. +...|...+.....+.+++.|..+|.+.... .|+...|..-+......++.++|.++++
T Consensus 599 dv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 888888888888887664 7778888888888888888888888888774 5677777777777777788889999888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 016027 274 KMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH 353 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 353 (396)
+.++. ++.-...|..+.+.+.+.++++.|...|..-.+. ++-.+..|-.|...--+.|.+-+|..++++..-++ +-+
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 88775 2323567777888888888888888888776654 23355667777777778889999999999988766 457
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHH-Hhccchh
Q 016027 354 YLTFKRLNDEFKKRGMTALAQKLCNV-MSSVPRS 386 (396)
Q Consensus 354 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~ 386 (396)
...|...++.-.+.|+.+.|..++.+ +++.|.+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 78899999999999999999988877 4444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-14 Score=129.15 Aligned_cols=251 Identities=12% Similarity=0.013 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH---------cCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK---------QGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
+.+++|++.|+++...++. . +..+..++.++.. .+++++|...++++.+.+|. +...+..+..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~--~---a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---~~~a~~~lg~ 346 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN--S---IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---NPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc--c---HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Confidence 4567777777777776542 1 2345555554432 23467777777777776554 6667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.+...|++++|...|++..+.++. +...+..+..++...|++++|+..+++..+.. +.+...+..++..+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHH
Confidence 777777777777777777776432 45666777777777777777777777777763 2222233334444556777777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|...++++....++.+...+..+..++...|++++|...+.++.... +.+....+.+...+...| +.|...++.+.+
T Consensus 425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 425 AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 77777777654332244456666777777788888887777765542 223334445555556555 366666666544
Q ss_pred CC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 278 SG-YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 278 ~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.. ..+....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 31 11111222 33334455665555544 666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-13 Score=110.76 Aligned_cols=342 Identities=13% Similarity=0.042 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+...+.-|.++|++++|+++|.+++... |..+..|.....+|...|+|++..+--.++.+.+|. -+..+..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~R 188 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLR 188 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHH
Confidence 56677888999999999999999999983 444888999999999999999999999998887544 2445555
Q ss_pred HHHHHHhcCChhHHHHH----------------------HHH---------HHhC--CCCCChhHHHHHHHHHHcc----
Q 016027 115 LLNGWFRSKNVKDAERF----------------------WLE---------MRKE--NVTPNVVTYGTLVEGYCRL---- 157 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~----------------------~~~---------~~~~--~~~~~~~~~~~l~~~~~~~---- 157 (396)
-..++-..|++.+|+.= +++ +.+. .+-|+.....+....+...
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 55566666665554421 111 1101 1224444333333332110
Q ss_pred ---------------------C---CHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHHcCCHHHHHHH
Q 016027 158 ---------------------R---RVDRAIRLVKEMRKE---GIEP---N------AIVYNTVIDGLVEAGRFEEVSGM 201 (396)
Q Consensus 158 ---------------------~---~~~~a~~~~~~~~~~---~~~~---~------~~~~~~l~~~~~~~~~~~~a~~~ 201 (396)
+ .+..|...+.+-... .... | ..+.......+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 0 112222222111110 0011 1 11111122223456888889999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 016027 202 MERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT 281 (396)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 281 (396)
|+..+...+.+ ...|--+..+|...++.++-.+.|......+.. ++.+|..-.....-.+++++|..=|++....++.
T Consensus 349 ~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 99998876543 333777888999999999999999999998755 8889999999999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCH--
Q 016027 282 PDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLV-----PHY-- 354 (396)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~-- 354 (396)
+...|..+..+..+.+.+++++..|++.+++- +-.+.+|+.....+...++++.|.+.|+..++.... .+.
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 56677777777888999999999999999874 447899999999999999999999999998873211 122
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhh
Q 016027 355 LTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMEL 389 (396)
Q Consensus 355 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (396)
.+-..++..- -.+++..|.+++++..+.++..+.
T Consensus 505 lV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 505 LVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred hhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHH
Confidence 2222333222 348999999999998887766543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-14 Score=125.74 Aligned_cols=269 Identities=12% Similarity=0.045 Sum_probs=196.4
Q ss_pred CCchhHHHHHHHHHHH-----cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh---------cCChhHHHHHHHH
Q 016027 69 DSGASLFEILLDSLCK-----QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR---------SKNVKDAERFWLE 134 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 134 (396)
+.+...|...+.+... .+++++|...|+++.+.+|+ +...|..+..++.. .+++++|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 3444545444444321 25689999999999999987 56677777665542 3458999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 016027 135 MRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM 214 (396)
Q Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 214 (396)
..+..+. +..++..+...+...|++++|...+++..+.+ +.+...+..+..++...|++++|+..++++.+..+. +.
T Consensus 330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 9987644 77888889999999999999999999999985 556778888899999999999999999999997664 33
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKIL 294 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (396)
..+..++..+...|++++|...+.++.+...+.++..+..+..++...|+.++|...+.++.... +.+....+.+...+
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33444555567789999999999998876433355567788888999999999999999876652 22334455566666
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 295 CKEDKLDLAIQVSKEMKCRG-CDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 295 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
...| +.+...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 47777777766531 12222222 44445566777776666 7777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-14 Score=110.47 Aligned_cols=262 Identities=13% Similarity=0.061 Sum_probs=215.3
Q ss_pred HHhcCChhHHHHHHHHHHhC---------CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 119 WFRSKNVKDAERFWLEMRKE---------NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
+...+|+..|..+.....+. |...|-..-+.+.++|.+.|.+.+|.+.++.-++. .|-+.||..+-++|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 34456666666444333221 11123333477899999999999999999998887 67888999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+..+.+.|+.++.+-++.-+ .++.....+.+.+-..++.++|.++++...+.. +.+......+...|.-.++++.|+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHH
Confidence 999999999999999988643 355556678888999999999999999999885 447778888888899999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID--LDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.+|+++.+.|+. ++..|+.+.-+|...+.++-++..|++.....-.|+ ..+|-.+....+..|++..|.+.|+-.+.
T Consensus 345 ryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 345 RYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 999999999976 889999999999999999999999999887544333 56788888889999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 348 RGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.+ ..+...++.|.-.-.+.|++++|..+++...+..+.
T Consensus 424 ~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 424 SD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 65 446788999988889999999999999998775443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-13 Score=108.81 Aligned_cols=199 Identities=13% Similarity=0.066 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|++.++++.+.. |.+..++..++..+...|++++|.+.++++....+. +...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHH
Confidence 3456666777777777777777777666543 555666666777777777777777777766665332 44556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENV-TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+...|++++|...+++...... ......+..+..++...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 6666666666777777777766655321 1123344455555666666666666666655542 2234455555555666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
.|++++|...+++..... +.+...+..++..+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666555542 2234444455555555566666555555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-12 Score=108.47 Aligned_cols=273 Identities=10% Similarity=0.064 Sum_probs=186.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+......-..-+....++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455555566667777888888888877766 3456666666666777777777777666677666 3556677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
.|...|+..+|.+.|.+....++. -...|-.+...|.-.|..++|+..+....+. ++-..--+-.+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 777778888888888877664432 3456777788888888888888877776654 11122223344555677778888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CChhhHHHHHHHHHhcCChhHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR----GCD--IDLDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
|.++|.+..... +-|+...+.+.-.....+.+.+|..+|+..+.. +.+ .-..+++.|.++|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887776653 336667777776666677788888877776521 100 1234567777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 342 FEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 342 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+++.+... +-+..++.++.-.|...|+++.|+..|++.....+.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 88877754 446777777777777888888888888776554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-12 Score=108.94 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
+.+.....++...|++++|++.++..... +.....+....+..+.+.|+.++|..++..+...+|. |...|.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~ 76 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHH
Confidence 34555667788999999999999876664 4666777888899999999999999999999988654 666666
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 114 ILLNGWFRS-----KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD-RAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 114 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
.+..+..-. .+.+....+|+++...- |...+...+.-.+.....+. .+..++..+...|+|+ +|..+-.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 666665222 35677888888887653 34444333333333323333 3566777777888543 4555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhc----C----------CCCchh--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 016027 188 GLVEAGRFEEVSGMMERFLVC----E----------PGPTMV--TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTT 251 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (396)
.|......+-..+++...... + ..|+.. ++..+...|...|++++|++.++..++..+. .+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHH
Confidence 565555555555555554322 1 123332 4456677888899999999999999887422 4778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--------H
Q 016027 252 YNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS--------T 323 (396)
Q Consensus 252 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~ 323 (396)
|..-.+.+-+.|++.+|.+.++..+..+.. |...-+..+..+.+.|+.++|.+++....+.+..|....+ .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 888888999999999999999999887644 7777777788888999999999999888776543332222 3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 016027 324 MLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
....+|.+.|++..|++.|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456788889999888887766653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-13 Score=99.88 Aligned_cols=198 Identities=15% Similarity=0.012 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+...++-.|.+.|+...|..-++++++.+ |.+..++..+...|.+.|+.+.|.+.|+++.+..|+ +..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-----Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-----PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchhhh
Confidence 44445555555555555555555555554 445555555555555555555555555555554433 4455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKEN-VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
....++..|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++.++.. +....+...+.......|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 5555555555555555555555431 11123345555555555555555555555555542 223334444555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
++-.|...++.....+. ++..+....|..-...|+.+.+.+.=.++.+
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555554444 4555555555555555555555444444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-13 Score=109.09 Aligned_cols=221 Identities=18% Similarity=0.121 Sum_probs=114.7
Q ss_pred ccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 8 AKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
.++.+.++..+.+++.... .|+ .....|..++..+...|++++|+..|+++.+.. |.++.+|+.++..+...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~-~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE-ERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH-hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHCC
Confidence 3455556666666664322 111 113456666666666677777776666666654 556666666666666777
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 166 (396)
++++|.+.|+++.+.+|+ +..+|..+..++...|++++|.+.|+...+.. |+..............+++++|...
T Consensus 113 ~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 777777777666665444 45566666666666667777776666666543 2222111222223344566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 167 VKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC---EPG---PTMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
+++..... .++...+ .+ .....|+...+ ..+..+.+. .+. .....|..+...+.+.|++++|...|+..
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65544321 2222111 11 12223443332 223332211 000 12235555566666666666666666666
Q ss_pred HHCC
Q 016027 241 ISRG 244 (396)
Q Consensus 241 ~~~~ 244 (396)
.+.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 5543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=105.42 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=130.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
......+..++..+...|++++|.+.++++...+|. +...+..+...+...|++++|.+.+++..+.... +...+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~ 103 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLN 103 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 334566777777888888888888888877765433 4566777777777778888888888777765432 455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
.+...+...|++++|.+.+++..+... +.....+..+..++...|++++|...+.+.....+. +...+..+...+...
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHc
Confidence 677777777777777777777765421 122344555566666677777777777766665332 345556666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 183 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 183 GQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666666654 233444555555566666666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=107.41 Aligned_cols=231 Identities=12% Similarity=0.013 Sum_probs=154.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..++.+|.+.|-+.+|.+-|+...+. .|-+.+|..|...|.+-+++..|+.+|.+-++. .+-++.....+.+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 34667777777777777777766553 345666777777777777777777777766654 2334444455666777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 016027 156 RLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASK 235 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 235 (396)
..++.++|.++|+...+.. +.+.+....+...|.-.++.+.|+.+|+++++.|.. ++..|+.+.-+|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7777777777777776653 445555555666666677777777777777777764 66777777777777777777777
Q ss_pred HHHHHHHCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 236 ILKMMISRGFLPS--PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 236 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.|......-..|+ ..+|-.+....+..|++..|.+.|+-....+. -+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7777665433232 34566666666777777777777777666542 25566777777777777777777777777665
Q ss_pred C
Q 016027 314 G 314 (396)
Q Consensus 314 ~ 314 (396)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-12 Score=108.85 Aligned_cols=300 Identities=17% Similarity=0.166 Sum_probs=216.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
++.......+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..++..++. |..-|..+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHH
Confidence 34445567778999999999999886542 2334556678889999999999999999999998643 5555556665
Q ss_pred HHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 153 GYCRL-----RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRF-EEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 153 ~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
+..-. .+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 55222 3567788899988776 34444443333222222223 3455667777777764 367777777776
Q ss_pred cCChHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 227 AGDLEGASKILKMMISR----G----------FLPSP--TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
..+.+-..+++...... + -+|+. .++..+...|...|++++|+.++++.++..+ ..+..|..-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~K 234 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTK 234 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 66655566666665432 1 12333 3556678889999999999999999998742 246788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HH--HHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYL------TF--KRLND 362 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~ 362 (396)
.+.+-+.|++.+|.+.++.+...... |...-+..+..+.+.|+.++|.+++....+.+..|-.. .| .....
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988765 77888888999999999999999999998766433221 23 34567
Q ss_pred HHHHcCCchHHHHHHHHHhcc
Q 016027 363 EFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~ 383 (396)
+|.+.|++..|++.|..+.+.
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999988887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-11 Score=101.62 Aligned_cols=364 Identities=13% Similarity=0.140 Sum_probs=187.0
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG 86 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (396)
..+++...+...+.+++. .|. ..+++...+-.+...|+-++|....+...+.+ +.+...|..++-.+....
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~e--HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-----~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPE--HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-----LKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCc--cchhHHhccchhhcccchHHHHHHHHHHhccC-----cccchhHHHHHHHHhhhh
Confidence 345666666666666663 333 13466666666666777777777766666643 455566666666666667
Q ss_pred ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 016027 87 RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL 166 (396)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 166 (396)
++++|++.|+.+...+++ |...|..+.-.-++.++++........+.+..+ .....|..++.++.-.|++..|..+
T Consensus 90 ~Y~eaiKcy~nAl~~~~d---N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKD---NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777665443 666666666666666666666666666655421 1344556666666666666666666
Q ss_pred HHHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 167 VKEMRKEG-IEPNAIVYNTVI------DGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 167 ~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
++...+.. ..|+...+.... ......|..+.|.+.+......-. .....-..-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 66665543 234444433221 223345555555555544332211 1112222334455555666666666666
Q ss_pred HHHCCCCCChhhHHHHHH-HHhccCCHHHHH-HHHH----------------------------------HHHHCCCCCC
Q 016027 240 MISRGFLPSPTTYNYFFR-YFSKFGKVEDAM-NLYR----------------------------------KMIESGYTPD 283 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~----------------------------------~~~~~~~~~~ 283 (396)
+... .||...|...+. ++.+..+..++. .+|. ...+.|++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p-- 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP-- 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC--
Confidence 6554 233333332222 221111212222 2222 22222222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH----H----cC----------CCCChhhHH--HHHHHHHhcCChhHHHHHHH
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMK----C----RG----------CDIDLDTST--MLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 343 (396)
.++..+...|-.....+ +++++. . .| -+|....|. .++..+-+.|+++.|...++
T Consensus 321 -~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 321 -SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred -chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 11222222221111111 222211 0 00 133333333 34555666777777777777
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhhhhhcC
Q 016027 344 DMIRRGLVPHY-LTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELLDSRCK 395 (396)
Q Consensus 344 ~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 395 (396)
..++. .|+. ..|..-.+.+.+.|+.++|..++++.++.+.++..+|+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 66653 4543 23444445666777777777777777777777777776664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.9e-12 Score=93.17 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
.+...|+..|...|+...|.+-++++.+.+|. +..+|..+...|.+.|+.+.|.+-|++..+..+. +....|....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~ 111 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhH
Confidence 34566888999999999999999999988765 7788999999999999999999999999887544 7778899999
Q ss_pred HHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 016027 153 GYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (396)
.+|..|.+++|.+.|++..... +.....+|..+.-+..+.|+.+.|...|++.++..+. ...+...+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 9999999999999999988763 2334568888888899999999999999999987664 5567778888899999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhH
Q 016027 232 GASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTY 287 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (396)
.|...++.....+. ++..+....|+.-...|+.+.+-++=..+... -|...-+
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99999999888865 78888888888888999988888777666654 3444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-11 Score=102.67 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=160.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
..++.+......-+...+++.+-.++++...+.+| +....+..-|.++...|+..+-..+=.++...- +-.+.+|-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp---fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP---FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC---CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 44455555556666666666666666666666443 233444444556666666666666656665552 33555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+.-.|.-.|...+|.++|.+....+ +.-...|..+...|+-.|..++|+..+..+.+.-+. ....+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 66666666666666666666655442 112334556666666666666666666655543211 1112222333455666
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CC---C-CChhhHHHHHHHHHhcCCHHH
Q 016027 229 DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES--GY---T-PDRLTYHILLKILCKEDKLDL 302 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~~l~~~~~~~~~~~~ 302 (396)
+.+.|.+.|.+..... +.|+...+.+.-.....+.+.+|..+|+..... .+ . .-..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 6666666666666553 335556666665555566666666666655421 00 0 122345666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 303 AIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
|+..+++.+...++ +..++.++.-.|...|+++.|.+.|.+.+. +.|+..+...++..+
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 66666666655433 666666666666666666666666666654 345554444444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-10 Score=100.02 Aligned_cols=376 Identities=16% Similarity=0.071 Sum_probs=251.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
++...|+++.+.+.|++.+..-. . ....|+.+...+...|.-..|+.+++....... .|+++..+......|.
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~-~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~---~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSF-G---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSE---QPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh-h---hHHHHHHHHHHHHHhccchHHHHHHHhhccccc---CCCcchHHHHHHHHHH
Confidence 45677888888888888876321 1 256888888888889988888888887766531 2455555555555555
Q ss_pred H-cCChHHHHHHHHHHhhccCCC--CCChHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 84 K-QGRVKAASEYFHKRKELDQSW--APTVRVYNILLNGWFRS-----------KNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 84 ~-~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
+ .+..++++.+-.++...-.+. ......|..+.-+|... ....++++.+++..+.+.. |+.....
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~ 483 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFY 483 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 4 466777777777666521111 11233444444444321 1245777888888776533 4444445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG------------------ 211 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 211 (396)
+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....-..
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDR 563 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccH
Confidence 55567788899999999999888855678888888888888889999999888877653221
Q ss_pred -CchhhHHHHHHHHHh-----------------------cCChHHHHHHHHHHH--------HCC---------CCCCh-
Q 016027 212 -PTMVTYTSLVKGYCK-----------------------AGDLEGASKILKMMI--------SRG---------FLPSP- 249 (396)
Q Consensus 212 -~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~---------~~~~~- 249 (396)
....+...++..+-. .++..++.+....+. ..+ ..|+.
T Consensus 564 e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~ 643 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPD 643 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCC
Confidence 001122222222210 001111111111110 000 01111
Q ss_pred -------hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 250 -------TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 250 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
..|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|......++. ++.+.
T Consensus 644 ~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~ 721 (799)
T KOG4162|consen 644 SLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSM 721 (799)
T ss_pred chHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHH
Confidence 123445556777788888887777766643 335566777777888899999999999999887654 67888
Q ss_pred HHHHHHHHhcCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhhhhh
Q 016027 323 TMLIHLLCRMYKFDEASA--EFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSMELL 390 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 390 (396)
.++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|...|....+...+.++.
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999999999999888888 999999977 5688999999999999999999999999988887776653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-10 Score=93.38 Aligned_cols=310 Identities=10% Similarity=0.009 Sum_probs=221.6
Q ss_pred CCCchhHHHHHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 016027 68 FDSGASLFEILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV 145 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (396)
.+++.......+.+++. .++...|...+-.+... ..++-|+.....+..++...|+.++|+..|++....++- +..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~-~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN-TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh-ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhh
Confidence 44444445555555544 45556666655544432 345557888899999999999999999999988765321 333
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
......-.+...|+++....+...+.... +-+...|..-+......++++.|+.+-++.++.++ .+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 44444555667888888888888876653 23344444444555667889999999999888655 36677777778888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL-KILC-KEDKLDLA 303 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a 303 (396)
..+++++|.-.|....... +-+...|.-|+..|...|.+.+|..+-+...+. +.-+..+...+. ..+. ....-++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 9999999999999888764 347889999999999999999998877776554 233555555542 2222 23345788
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 304 IQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+++++..+..+. -....+.+...+...|+.+.++.++++.+.. .||....+.|.+.+...+.+++|...|....+.
T Consensus 424 Kkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888887765322 3455677778888999999999999988863 688888899999999999999999999886665
Q ss_pred chh
Q 016027 384 PRS 386 (396)
Q Consensus 384 ~~~ 386 (396)
++.
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-11 Score=93.90 Aligned_cols=366 Identities=15% Similarity=0.094 Sum_probs=190.0
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+...+++..|+.+++-....+.... ..+-.-++.++...|++++|...+..+...+ .++..++..|.-++.-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE---~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-----~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE---DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-----DAPAELGVNLACCKFY 103 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh---HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-----CCCcccchhHHHHHHH
Confidence 3445666666666655543322111 1233335566666677777776666665543 4444555556555556
Q ss_pred cCChHHHHHHHHHHhhccC-----------------------CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 016027 85 QGRVKAASEYFHKRKELDQ-----------------------SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT 141 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (396)
.|.+.+|..+-.++.+..- ....+..---+|.+.....-.+++|+++|......+
T Consensus 104 Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6666666665544332100 000011122233333334445777777777776642
Q ss_pred CChhHHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCH-----------------------
Q 016027 142 PNVVTYGT-LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA--GRF----------------------- 195 (396)
Q Consensus 142 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~----------------------- 195 (396)
|.-...|. +.-+|.+..-++-+.++++-.++. ++.++...+..+....+. |+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 33334433 334455555566666665555544 122222222222111111 111
Q ss_pred ----------HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH-----------------------
Q 016027 196 ----------EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS----------------------- 242 (396)
Q Consensus 196 ----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------- 242 (396)
+.|++++-.+.. .-+.....++-.|.+.++..+|..+.+++.-
T Consensus 261 rHNLVvFrngEgALqVLP~L~~----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMK----HIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHh----hChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 111111111111 0122333444455555555555555444321
Q ss_pred ---------------CCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 016027 243 ---------------RGFLP-SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQV 306 (396)
Q Consensus 243 ---------------~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (396)
++..- +...-..+...+.-..++++++.++..+...-..-|...+ .+.++.+..|++.+|.++
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 11110 1111222333334445566666666666554333333434 467888889999999999
Q ss_pred HHHHHHcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 307 SKEMKCRGCDIDLDTS-TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLT-FKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
|-++....++ |..+| ..|.++|.+.++++.|+.++-++ +-+.+..+ +..+.+.|.+.|.+=-|-+.|+.+...+
T Consensus 416 f~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 416 FIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 9888765555 55555 45668889999999887775444 32333333 3344567888899888889999988888
Q ss_pred hhhhhh
Q 016027 385 RSMELL 390 (396)
Q Consensus 385 ~~~~~~ 390 (396)
++|+..
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 777653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-10 Score=93.61 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=225.2
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS 122 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (396)
.+-.++...|.+.+-.+.... .++.+......++..+...|+..+|...|++....+|. ++.........+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~---~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy---~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNT---TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD---NVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHhcccchhhhHHHHHHhhc---cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh---hhhhHHHHHHHHHhc
Confidence 344566666666666555543 45889999999999999999999999999999887654 333333344446778
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMM 202 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (396)
|+++....+...+.... .-+...|-.-+.......+++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|
T Consensus 280 g~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred cCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHH
Confidence 99999888888877642 2344555555566667889999999999888764 345556666668889999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHH-hccCCHHHHHHHHHHHHHCCC
Q 016027 203 ERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFF-RYF-SKFGKVEDAMNLYRKMIESGY 280 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~ 280 (396)
+......+ .+...|..|+..|...|.+.+|.-+-+...+. ++.+..+...+. ..+ .....-++|.++++.....+
T Consensus 358 R~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~- 434 (564)
T KOG1174|consen 358 RTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN- 434 (564)
T ss_pred HHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-
Confidence 99887644 47889999999999999999999888777665 344666666553 222 23334578999998877753
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 281 TPD-RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 281 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
|+ ....+.+...+...|..+.++.++++.... .||....+.|...+...+.+.+|++.|...++.+
T Consensus 435 -P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 435 -PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred -CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44 456777888899999999999999998865 6799999999999999999999999999998865
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-10 Score=97.49 Aligned_cols=329 Identities=16% Similarity=0.126 Sum_probs=205.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
..+..|+++.|+..|-+++.. .|. +...|..=..+|...|++++|++--.+..+.. |.-+..|...+.++.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l--~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIML--SPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PDWAKGYSRKGAALF 81 (539)
T ss_pred hhcccccHHHHHHHHHHHHcc--CCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----CchhhHHHHhHHHHH
Confidence 456789999999999999985 343 36678888999999999999999988888885 888899999999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC---C------------------------------------
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK---N------------------------------------ 124 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~------------------------------------ 124 (396)
-.|++++|+..|.+-.+.+|. |...+..+..++.... +
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~---n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS---NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc---hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999998887654 5666666666552110 0
Q ss_pred ------------hhHHHHHHHHH-----HhC-------CCCCC----------------------hhHHHHHHHHHHccC
Q 016027 125 ------------VKDAERFWLEM-----RKE-------NVTPN----------------------VVTYGTLVEGYCRLR 158 (396)
Q Consensus 125 ------------~~~a~~~~~~~-----~~~-------~~~~~----------------------~~~~~~l~~~~~~~~ 158 (396)
+..+.-.+... ... +..|. ..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 00000000000 000 00010 011233455555556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH-------HHHHHHHhcCChH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT-------SLVKGYCKAGDLE 231 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~ 231 (396)
+++.+++.+....... -+...++....+|...|.+......-....+.|.. ...-|+ .+..+|.+.++++
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 6666666666666653 34445555666677777766666665555554432 111222 2333555566777
Q ss_pred HHHHHHHHHHHCCCCCChhhH-------------------------HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhh
Q 016027 232 GASKILKMMISRGFLPSPTTY-------------------------NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLT 286 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (396)
.|+..|.+.......|+...- ..-...+.+.|++..|+..|.+++..+ +-|...
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l 394 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL 394 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH
Confidence 777777766554333332111 111233556777777777777777765 336677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
|....-+|.+.|.+..|+.-.+...+.++. ....|.-=..++....++++|.+.|++.++.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777777777777777776666665322 33444444455555667777777777776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-10 Score=90.28 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=187.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+.-+....++..|+.+++.....+. .....+-.-++.++...|++++|+..+..+... ..++...+..|.-++
T Consensus 29 Ledfls~rDytGAislLefk~~~~~----EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR----EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHH
Confidence 4556778899999999998776542 222344455778888999999999999988763 245677788888887
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHH------------------------------HHHHHHHccCCHHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYG------------------------------TLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~~ 169 (396)
.-.|.+.+|..+-.+..+ ++-... +|.........+.+|+++|.+
T Consensus 102 FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 788888888877655332 111111 222233333456677777777
Q ss_pred HHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH-------
Q 016027 170 MRKEGIEPNAIVYNT-VIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI------- 241 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 241 (396)
.+.. .|.....+. +.-+|.+..-++-+.++++-.++.-+ .+....+..+....+.-+-..|++-.+.+.
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 7665 344444443 33456666667777776666655422 233333333222222111111111111111
Q ss_pred -------HCC------------CCC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHH--------
Q 016027 242 -------SRG------------FLP-----SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHI-------- 289 (396)
Q Consensus 242 -------~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 289 (396)
+.+ +-| -+..-..++-.|.+.+++.+|..+.+++... .|.....-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQ 331 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhh
Confidence 110 000 1122333444567788888888777654321 122111111
Q ss_pred ---------------------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 016027 290 ---------------------------------LLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFD 336 (396)
Q Consensus 290 ---------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (396)
+..++.-...+++.+..+..+..--.. |....-.+..+.+..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChH
Confidence 111111222333333333333332222 2222234678888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCchHHHHHHHHHhccchhhhhh
Q 016027 337 EASAEFEDMIRRGLVPHYLTFK-RLNDEFKKRGMTALAQKLCNVMSSVPRSMELL 390 (396)
Q Consensus 337 ~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 390 (396)
+|.++|-++....++ |..+|. .+.++|.+.|..+.|..++-++.........+
T Consensus 411 eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLL 464 (557)
T KOG3785|consen 411 EAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLL 464 (557)
T ss_pred HHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHH
Confidence 999999888765555 444554 55678899999999999888777665554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-09 Score=92.88 Aligned_cols=366 Identities=14% Similarity=0.123 Sum_probs=208.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
++.+...|++++|++...+++... |+ +..++..-+.++.+.+++++|+.+.+.-... ..+...+..-+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYC 88 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHH
Confidence 456778999999999999999854 55 3668999999999999999999776654432 1111222344556
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-------------------
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP------------------- 142 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------- 142 (396)
..+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+.+.+-
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRL------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHcccHHHHHHHHhccccc------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 66889999999999844332 44566677788899999999999999986643220
Q ss_pred --------ChhHHHHH---HHHHHccCCHHHHHHHHHHHHHcC-------CCCCHHH-------HHHHHHHHHHcCCHHH
Q 016027 143 --------NVVTYGTL---VEGYCRLRRVDRAIRLVKEMRKEG-------IEPNAIV-------YNTVIDGLVEAGRFEE 197 (396)
Q Consensus 143 --------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~-------~~~l~~~~~~~~~~~~ 197 (396)
...+|..+ .-.+...|++.+|+++++...+.+ -..+... -..+.-++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01122222 223456688888888887773321 1111111 1223345566788888
Q ss_pred HHHHHHHHHhcCCCCchhh----HHHHHHHHHhcCChHH--HHHHHH------------HH-------------------
Q 016027 198 VSGMMERFLVCEPGPTMVT----YTSLVKGYCKAGDLEG--ASKILK------------MM------------------- 240 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~--a~~~~~------------~~------------------- 240 (396)
|.+++...++..+. |... -|.++ +.....++-. ++..++ .+
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888776542 2211 11111 1111111000 000000 00
Q ss_pred ---------HHC--CCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 241 ---------ISR--GFLPSPTTYNYFFRYFS--KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 241 ---------~~~--~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
... +..|. ..+..++..+. +......+..++...-+....-...+.-..+......|+++.|.+++
T Consensus 321 nk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000 11111 12222222221 11134555555555544422212334455566677788899888888
Q ss_pred H--------HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHHcCCchHH
Q 016027 308 K--------EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR--GLVPHYLTFKRL----NDEFKKRGMTALA 373 (396)
Q Consensus 308 ~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l----~~~~~~~g~~~~A 373 (396)
. .+.+.+. .+.+...+...+.+.++.+.|..++.+.+.. .-.+.......+ +..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 4444433 3445556666777777777777777776541 112222333333 3333567888888
Q ss_pred HHHHHHHhc-cchhhh
Q 016027 374 QKLCNVMSS-VPRSME 388 (396)
Q Consensus 374 ~~~~~~~~~-~~~~~~ 388 (396)
...++++.+ .|...+
T Consensus 478 ~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTD 493 (652)
T ss_pred HHHHHHHHHhCCchHH
Confidence 888888877 344433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-10 Score=95.81 Aligned_cols=202 Identities=17% Similarity=0.063 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|+.+.+.+.+.+..+..... .............+...|++++|.+.++++....|. +...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR--ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR---DLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHH
Confidence 5577788888888888888877777776654211 122333444555677788999999999888876443 44444
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 113 NILLNGWFR----SKNVKDAERFWLEMRKENVTPN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 113 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
.. ...+.. .+....+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 42 222222 34445555554441 112222 3344556677788888888888888888874 445667777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-Cc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPG-PT--MVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
++...|++++|...+++.....+. ++ ...|..+...+...|++++|..++++....
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888888887765432 22 234556777888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-11 Score=104.91 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--cc-CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC-----C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDM--VK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ-----S 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~ 104 (396)
..++..++..|...|++++|..+++++.+.-. .. ..+.-....+.++..|...+++.+|..+|+++..... .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555677777777777777777777666410 00 1122222233455666666666666666666544311 1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcC---
Q 016027 105 WAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE-----NVT-PNV-VTYGTLVEGYCRLRRVDRAIRLVKEMRKEG--- 174 (396)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 174 (396)
.+.-..+++.|...|.+.|++++|...++...+- |.. |.. ..++.+...+...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1122344555666666666666666655554321 111 111 123344445555555555555555443320
Q ss_pred CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 175 IE----PNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 175 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.. .-..+++.+...|...|++++|.+++++++
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 00 112344445555555555555555554444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-10 Score=100.69 Aligned_cols=240 Identities=19% Similarity=0.189 Sum_probs=180.4
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-----G-IEPNAIV-YNTVIDGLVEAGRFEEVSGMMERFLVC-----EP 210 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 210 (396)
-..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999988765 2 1233333 334778899999999999999998763 22
Q ss_pred C--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHC---
Q 016027 211 G--PTMVTYTSLVKGYCKAGDLEGASKILKMMISR-----GF-LPS-PTTYNYFFRYFSKFGKVEDAMNLYRKMIES--- 278 (396)
Q Consensus 211 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 278 (396)
. .-..+++.|..+|.+.|++++|...++...+. +. .|. ...++.+...+...+.+++|..++.+..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 22457788888999999999998888776542 11 112 234667778889999999999999876542
Q ss_pred CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 279 GYTPD----RLTYHILLKILCKEDKLDLAIQVSKEMKCRG----C---DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 279 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
-+.++ ..+++.|...|...|++++|.+++++++... . .-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 4678999999999999999999999987531 1 11245678889999999999999999987653
Q ss_pred ----CCC-CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 348 ----RGL-VPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 348 ----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.|. .|+ ..+|..|...|.+.|+++.|+++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 233 46789999999999999999999998753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-11 Score=97.47 Aligned_cols=221 Identities=12% Similarity=0.008 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK 126 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (396)
+..+.++..+.+++..... +.+..+..|..++..+...|++++|...|+++.+.+|. +...|+.+...+...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~-~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDL-TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccC-CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHH
Confidence 4555566666665543211 01122445666666666677777777777776665443 5566666666677777777
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
+|...|++..+..+. +..++..+..++...|++++|++.++...+.. |+..........+...++.++|...+.+..
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777766654322 44556666666666677777777666666552 222211122222334556666666665543
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 207 VCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR---GF---LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
... .++. |. ........|+...+ ..+..+.+. .+ +....+|..+...+...|++++|...|++..+.+
T Consensus 193 ~~~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 321 1111 11 11222223444332 233333321 00 0122345555666666666666666666665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-09 Score=86.24 Aligned_cols=298 Identities=12% Similarity=0.045 Sum_probs=223.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++..|+.-|-.+++ ..|+ +-.++..-+..|...|+..-|+.-+.++++.. |.-..+...-+..+.
T Consensus 47 ~lla~~Q~sDALt~yHaAve--~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----pDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVE--GDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----PDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHc--CCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----ccHHHHHHHhchhhh
Confidence 45678999999999999988 4666 35577777889999999999999999999874 433444555677888
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYN------------ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
++|.+++|..=|+.....+|+-..+...+. ..+..+.-.|+...|+.....+++..+- +...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHH
Confidence 999999999999999887654333333322 2334456689999999999999987543 778888889
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh----HHHH-------
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVT----YTSL------- 220 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l------- 220 (396)
.+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.++...++.++.+ |+... |..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHH
Confidence 99999999999998887776664 3456667777788899999999999999998854 34322 2111
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 221 --VKGYCKAGDLEGASKILKMMISRGFLPSP---TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 221 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+......++|-++.+..+...+..+.... ..+..+-.++...+++.+|++.-.++++.. +.|..++..-..+|.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHh
Confidence 22344567788888888887776433222 234455667778899999999999988763 224778888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 016027 296 KEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~ 315 (396)
-..+++.|+.-|+.+.+.+.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCc
Confidence 89999999999999887643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-09 Score=94.04 Aligned_cols=310 Identities=13% Similarity=0.003 Sum_probs=196.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|..+..+..+...+...|+.+.+.+.+.......+...............+...|++++|.+++++..+..+. +...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 5566778888888888899999888888776654321111223333445667789999999999998876432 444444
Q ss_pred HHHHHHH----ccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 149 TLVEGYC----RLRRVDRAIRLVKEMRKEGIEPN-AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 149 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
. ...+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 2 22222 234555555555441 112333 344456667889999999999999999997653 56778889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHh
Q 016027 224 YCKAGDLEGASKILKMMISRGFL-PSP--TTYNYFFRYFSKFGKVEDAMNLYRKMIESGY-TPDRLTY-H--ILLKILCK 296 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~ 296 (396)
+...|++++|...+.+....... |+. ..|..+...+...|++++|..++++...... .+..... + .++..+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 99999999999999998876322 222 2455688889999999999999999865432 1111111 1 22333334
Q ss_pred cCCHHHHHHH--HHHH-HHcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CCHHHHHHHH--HHH
Q 016027 297 EDKLDLAIQV--SKEM-KCRGC-DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLV------PHYLTFKRLN--DEF 364 (396)
Q Consensus 297 ~~~~~~a~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~ 364 (396)
.|....+..+ +... ..... ............++...|+.++|...++.+...... ....+-..++ -++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 4443333332 1111 11101 111122235667788899999999999988762211 1111222233 355
Q ss_pred HHcCCchHHHHHHHHHhcc
Q 016027 365 KKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~ 383 (396)
...|+.++|.+.+......
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6899999999999886543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-09 Score=89.61 Aligned_cols=365 Identities=12% Similarity=0.130 Sum_probs=199.4
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+.++|++......|+.++..- |-......|-..+......|-++.++.++++.++.. |..-...+..++
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraL--pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--------P~~~eeyie~L~ 180 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRAL--PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--------PEAREEYIEYLA 180 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhC--chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Confidence 4556677777777777776643 222224567777777777777777777777776653 222455566666
Q ss_pred HcCChHHHHHHHHHHhhccC----------------------------------------CCCCC--hHHHHHHHHHHHh
Q 016027 84 KQGRVKAASEYFHKRKELDQ----------------------------------------SWAPT--VRVYNILLNGWFR 121 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~----------------------------------------~~~~~--~~~~~~l~~~~~~ 121 (396)
+.+++++|.+.+......+. +.-+| ...|++|+.-|++
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 77777777666655443211 00111 2458889999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc---------------------------------------------
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR--------------------------------------------- 156 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------------- 156 (396)
.|.+++|.++|++..+.-. +..-|..+.++|+.
T Consensus 261 ~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 9999999999988776411 22222222222211
Q ss_pred ---------------------cCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 157 ---------------------LRRVDRAIRLVKEMRKEGIEPN------AIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 157 ---------------------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
.|+..+-...|.++.+. +.|. ...|..+...|-..|+.+.|..+|++..+..
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 11122222223222222 1111 1234455555666666666666666665543
Q ss_pred CCCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------------CChhhHHHHHHHHhccCCHHHHH
Q 016027 210 PGPT---MVTYTSLVKGYCKAGDLEGASKILKMMISRGFL-----------------PSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 210 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.- ..+|..-...-.+..+++.|.+++......--. -+...|+..++.-...|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 2211 234444444445555566666665554432100 01223444555555556666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHh---cCChhHHHHHHHHH
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL-DTSTMLIHLLCR---MYKFDEASAEFEDM 345 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~ 345 (396)
.+|+++.+..+. ++.........+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ..+++.|..+|++.
T Consensus 498 ~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 667666665543 3443333444444555566777777666555334443 556666655543 23578888999988
Q ss_pred HHCCCCCCHHHHHHH--HHHHHHcCCchHHHHHHHHHhcc
Q 016027 346 IRRGLVPHYLTFKRL--NDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 346 ~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
++ |.+|...-+..| ...-.+.|....|+.++++....
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 88 555554322222 22224568888888888886553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-08 Score=87.97 Aligned_cols=359 Identities=14% Similarity=0.088 Sum_probs=244.6
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
...|+-++|.......++. ++. |...|..++-.+....++++|+.+|..+...+ +.|..++.-+...-++.
T Consensus 52 ~~lg~~~ea~~~vr~glr~--d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-----~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRN--DLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-----KDNLQILRDLSLLQIQM 122 (700)
T ss_pred hcccchHHHHHHHHHHhcc--Ccc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHH
Confidence 3468899999988888874 333 56789999999999999999999999999986 88899999998888899
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHH------HHHHccC
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPNVVTYGTLV------EGYCRLR 158 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~ 158 (396)
++++.....-....+..++ ....|..++.++.-.|++..|..+.++..+.. -.|+...+.... ....+.|
T Consensus 123 Rd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999988888888876554 56778889999999999999999999987764 345665554322 3345677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHH-HH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAI-VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGAS-KI 236 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 236 (396)
.+++|.+.+..-... ..|.. .-..-...+.+.+++++|..++..++..++. +...|..+..++.+..+.-++. .+
T Consensus 200 ~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred cHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888777655433 22222 2334556778889999999999998885442 3333333444443222222222 34
Q ss_pred HHHHHH----------------------------------CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH----C
Q 016027 237 LKMMIS----------------------------------RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE----S 278 (396)
Q Consensus 237 ~~~~~~----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 278 (396)
|....+ .|++ .++..+...|-.-...+-..++.-.+.. .
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 433332 2222 1233333333222211111111111111 1
Q ss_pred C----------CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 279 G----------YTPDRL--TYHILLKILCKEDKLDLAIQVSKEMKCRGCDID-LDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 279 ~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
| -+|... ++..++..+-+.|+++.|..+++.+..+ .|+ +..|..=.+.+...|++++|..++++.
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 1 134443 3445677888999999999999999976 333 345555568899999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 346 IRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 346 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
.+.+ .||...-..-+.-..+.++.++|.+++.++.+.+.
T Consensus 432 ~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 432 QELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred Hhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8876 45655544666666889999999999999887664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-11 Score=100.49 Aligned_cols=253 Identities=13% Similarity=0.053 Sum_probs=137.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
.+.-+.+.|++.+|.-.|+.+.+.+ |.+..+|..|+......++-..|+..++++.+++|+ |......|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-----P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLAVS 362 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-----PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALAVS 362 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-----hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHHHH
Confidence 4445556666666666666666554 556666666666666666666666666666665544 55566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC--------ChhHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTP--------NVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-EGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 189 (396)
|...|.-..|.+.+++.+...++- +...-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 666666666666666554332110 0000000 111222233333444433333 33335666666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.-.|++++|+..|+.++...| .|...||-|..+++...+.++|+..|.+..+..+. -+.+...|.-.|...|.+++|.
T Consensus 441 ~ls~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHH
Confidence 667777777777777766544 25666777777777666677777777776665322 2334444555666677777776
Q ss_pred HHHHHHHHC---------CCCCChhhHHHHHHHHHhcCCHHHH
Q 016027 270 NLYRKMIES---------GYTPDRLTYHILLKILCKEDKLDLA 303 (396)
Q Consensus 270 ~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a 303 (396)
..|-.++.. ...++...|..|=.++.-.++.+.+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 666554321 1112334555555555555555533
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=75.94 Aligned_cols=50 Identities=32% Similarity=0.769 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
||+.+||.++.+|.+.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-08 Score=81.24 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=163.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH-
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV- 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 111 (396)
..-...++..+...|++..|+.-|..+...+ |.+-.++..-+..|...|+-..|+.=+.+..+. +||-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----KpDF~~A 108 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----CccHHHH
Confidence 4455567777777777777777777777654 556666666677777777777777777776655 344221
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
-..-...+.+.|.+++|..=|+.+++.. |+..+- ..++.+.--.++- ......+..+..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASG 167 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhc
Confidence 1223345667777777777777776653 221110 0000000000000 001112222334
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNL 271 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (396)
.|+...|+.....+++..+ .+...+..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555555555555555432 34445555555555555555555555555444222 334444444445555555555555
Q ss_pred HHHHHHCCCCCChhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCh
Q 016027 272 YRKMIESGYTPDRLT----YHIL---------LKILCKEDKLDLAIQVSKEMKCRGCDIDL---DTSTMLIHLLCRMYKF 335 (396)
Q Consensus 272 ~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 335 (396)
.++.++.+ ||... |-.+ +......+++.++++..+...+..+.... ..+..+-.++...+++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 55554432 23211 1100 11223445566666666665555333222 2233344555566666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 336 DEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 336 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
.+|+....+.++.. +.|..++.--..+|.-...++.|+.-|++..+.+.+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 66666666666532 2235556566666666666666666666666555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-09 Score=88.49 Aligned_cols=335 Identities=16% Similarity=0.119 Sum_probs=219.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.-+.+....|+++.|+..|..++... |++...|..-..+|+..|++++|++=-.+.....|.+ ...|+....
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~-----p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Ga 78 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLS-----PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGA 78 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccC-----CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHH
Confidence 34566788999999999999999986 8899999999999999999999998888877775543 457888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC----------------------------C----------
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR----------------------------R---------- 159 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~---------- 159 (396)
++.-.|++++|+.-|.+-++... -+...+..+..++.... .
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 99999999999999999887632 25555566655542110 0
Q ss_pred -------------HHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHHc
Q 016027 160 -------------VDRAIRLVKEM-----RKEG-------IEP------------N----------AIVYNTVIDGLVEA 192 (396)
Q Consensus 160 -------------~~~a~~~~~~~-----~~~~-------~~~------------~----------~~~~~~l~~~~~~~ 192 (396)
+..+...+... ...| ..| + ..-...+.++..+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 00011000000 0000 011 0 01123455566666
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH-------HHHHHhccCCH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNY-------FFRYFSKFGKV 265 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~ 265 (396)
.+++.|++-+....... .+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 67777777777777654 35556666777788888877777766666655432 2222332 33355666777
Q ss_pred HHHHHHHHHHHHCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 016027 266 EDAMNLYRKMIESGYTPDRLTY-------------------------HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD 320 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (396)
+.+...|.+.......|+...- ..-...+.+.|++..|+..|.++++..+. |..
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DAR 393 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhH
Confidence 8888888776554333332211 11133455678888888888888877644 778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.|....-+|.+.|.+..|++-.+..++.+ ++....|..-..++....++++|.+.|++..+..++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 88888888888888888888777777653 333445555555666677788888888876655443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-10 Score=94.17 Aligned_cols=258 Identities=12% Similarity=0.028 Sum_probs=195.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
..+.-+.+.|++.+|.-.|+.+.+.+|. +...|..|.......++-..|+..+.+..+..+. |......|.-.|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytN 365 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhh
Confidence 3566778899999999999999998766 8899999999999999999999999999887544 78888999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCchhhHHHHHHHHHhc
Q 016027 157 LRRVDRAIRLVKEMRKEGIE-----P---NAIVYNTVIDGLVEAGRFEEVSGMMERFLV-CEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 227 (396)
.|.-..|.+.++..+....+ + +...-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999888654210 0 0000000 112222334445555554443 34347888999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
|++++|++.|+.+....+. |...||.|...+....+.++|+..|.+.++..+. -..+...|.-.|...|.+++|...|
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999987544 8889999999999999999999999999986432 2345556778899999999999998
Q ss_pred HHHHHc---------CCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 016027 308 KEMKCR---------GCDIDLDTSTMLIHLLCRMYKFDEASAEF 342 (396)
Q Consensus 308 ~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (396)
-.++.. ...++...|..|=.++.-.++.+-+.+..
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 877642 12234578888877788888877665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-09 Score=84.51 Aligned_cols=85 Identities=7% Similarity=0.030 Sum_probs=34.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGM 201 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 201 (396)
.+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++.
T Consensus 125 e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHH
Confidence 344444444444433221 23333333333344555555555555544432111122232222 23344555555555
Q ss_pred HHHHHhcCC
Q 016027 202 MERFLVCEP 210 (396)
Q Consensus 202 ~~~~~~~~~ 210 (396)
..++.+.|+
T Consensus 201 iSEIieRG~ 209 (459)
T KOG4340|consen 201 ISEIIERGI 209 (459)
T ss_pred HHHHHHhhh
Confidence 555554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-08 Score=86.78 Aligned_cols=337 Identities=13% Similarity=0.042 Sum_probs=232.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA-RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.|.-.|.-..|+.+.+..+.....|+. ...+....+.|. +.|..++++++-.++........-...+..|..++-+|
T Consensus 366 s~saag~~s~Av~ll~~~~~~~~~ps~--~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y 443 (799)
T KOG4162|consen 366 SYSAAGSDSKAVNLLRESLKKSEQPSD--ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY 443 (799)
T ss_pred HHHHhccchHHHHHHHhhcccccCCCc--chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 355667778899998888876555652 335555555554 46888889988888887321111123345566666665
Q ss_pred HHcC-----------ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 83 CKQG-----------RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 83 ~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...- ...++++.++++.+.++. |..+...+.--|+..++.+.|.+..++..+.+..-+...|..+.
T Consensus 444 ~~~A~~a~~~seR~~~h~kslqale~av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA 520 (799)
T KOG4162|consen 444 GFQARQANLKSERDALHKKSLQALEEAVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLA 520 (799)
T ss_pred HhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 5431 256788899999887654 33333344555778899999999999999886677899999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHc-CCC------------------CCHHHHHHHHHHHHH---------c-----------
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKE-GIE------------------PNAIVYNTVIDGLVE---------A----------- 192 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~~~~~~~~l~~~~~~---------~----------- 192 (396)
-.+...+++.+|+.+.+..... |.. ....|...++..+-. .
T Consensus 521 LvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 9999999999999998887654 110 001122222221110 0
Q ss_pred ---CCHHHHHHHHHHHH--------hcC-----------CCCc------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 193 ---GRFEEVSGMMERFL--------VCE-----------PGPT------MVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 193 ---~~~~~a~~~~~~~~--------~~~-----------~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
++..++.+....+. ..+ +.|+ ...|......+.+.+..++|...+.+.....
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 01111111111110 011 0111 2245566777888889999998888888764
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhH
Q 016027 245 FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ--VSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~ 322 (396)
+-....|......+...|++++|.+.|......++. ++....++..++.+.|+..-|.. ++..+.+.++. +...|
T Consensus 681 -~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW 757 (799)
T KOG4162|consen 681 -PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAW 757 (799)
T ss_pred -hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHH
Confidence 446777888888888999999999999998886532 56788899999999998887777 99999998765 89999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
..+...+.+.|+.+.|.+.|....+.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999988763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-10 Score=101.45 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=142.2
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
|+.|+..+|..++.-|+..|+.+.|- +|.-|... ..+-+...++.++.+....++.+.+. .|.+.+
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 45677778888888888888888777 77777665 44456667777777777777776665 567778
Q ss_pred HHHHHHHHHccCCHHH---HHHHHHHHH----HcCCCCCHHHHH--------------HHHHHHHHcCCHHHHHHHHHHH
Q 016027 147 YGTLVEGYCRLRRVDR---AIRLVKEMR----KEGIEPNAIVYN--------------TVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
|..|..+|...||... +.+.+..+. ..|+-.....+- ..+....-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887654 222111111 112111111111 1112222334444444444333
Q ss_pred HhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChh
Q 016027 206 LVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRL 285 (396)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (396)
-..... . .+..+++-+... .....++........-.|++.+|.+++..-.-.|+.+.|..++.+|.+.|++.+..
T Consensus 166 Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 166 PVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred Cccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 111000 0 111112222221 22233333333322224677777777777777777777777777777777777766
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 016027 286 TYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (396)
-|..|+.+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666544 66777777777777777777777777776666666443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=74.16 Aligned_cols=50 Identities=34% Similarity=0.489 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 016027 317 IDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK 366 (396)
Q Consensus 317 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 366 (396)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888877788888888888777753
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-09 Score=81.33 Aligned_cols=356 Identities=12% Similarity=0.071 Sum_probs=202.3
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+.+..+++.|++++....+. .|. +...+..++.+|....++..|-.+++++.... |.-..--..-...+.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er--~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-----P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER--SPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-----PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc--Ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHHHH
Confidence 36677888888887766664 342 36788899999999999999999999888763 3333322334555666
Q ss_pred cCChHHHHHHHHHHhhcc----------------CCC-------------CCChHHHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 85 QGRVKAASEYFHKRKELD----------------QSW-------------APTVRVYNILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~----------------~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
.+.+..|+.+...+...+ .+. .-+..+.+...-...+.|+++.|.+-|...
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 677777776665544310 000 113344444555566789999999999988
Q ss_pred HhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----------------------------HHHHHHH
Q 016027 136 RKE-NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA----------------------------IVYNTVI 186 (396)
Q Consensus 136 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~ 186 (396)
.+. |.. ....|+..+ +..+.++++.|+++..+++++|++..+ ..+|.-.
T Consensus 171 lqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 876 444 555666554 445678999999999999999864311 1122233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (396)
..+.+.|+++.|.+.+..|-... ...|+.|...+.-.= ..+++-+...-+.-+...++ -...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 34566777777777776663321 224556665554222 23445555555555555544 3456777778888888888
Q ss_pred HHHHHHHHHHHHCCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCChh----HH
Q 016027 266 EDAMNLYRKMIESGY-TPDRLTYHILLKILC-KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL-CRMYKFD----EA 338 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~----~a 338 (396)
+.|-+++.+-..... -.+...|+. +.++. -.-..+++.+-+..+...- ....-...+..- .+..+-+ .|
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 877777654211100 112333332 33332 2345666666555554320 111111111111 1222212 22
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 339 SAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 339 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
++-+++.++.- ..+...-...|++..++..+.++|+.-.
T Consensus 403 i~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 403 VNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 22233333321 1123333445667788888888887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-08 Score=93.84 Aligned_cols=372 Identities=10% Similarity=-0.032 Sum_probs=230.2
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++.+|...+... +..+. ........+..+...|+++.+..+++.+.... ...++.........+.
T Consensus 350 ~~~~~g~~~~Al~~a~~a---~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~----~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAA---GDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEV----LLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHCCCHHHHHHHHHHC---CCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH----HhcCcchHHHHHHHHH
Confidence 355677777776543332 11111 02233344556667788888777777653321 1222334455566667
Q ss_pred HcCChHHHHHHHHHHhhccCCC----CCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hHHHHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSW----APT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV----VTYGTLVEG 153 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 153 (396)
..|++++|..++..+...-... .+. ......+...+...|++++|...++.....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 8899999999998875431111 111 122233345566789999999999988763111121 244566677
Q ss_pred HHccCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C-chhhHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGI---EP--NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC----EPG--P-TMVTYTSLV 221 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 221 (396)
+...|++++|...+++.....- .+ .......+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 7889999999999988765311 11 1234455667788899999999988877653 211 1 123344566
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCChh--hH--HHHH
Q 016027 222 KGYCKAGDLEGASKILKMMISR----GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG--YTPDRL--TY--HILL 291 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~ 291 (396)
..+...|++++|...+.+.... +.......+..+...+...|++++|...+....... ...... .. ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6777889999999998887653 111123344556667788999999999988875421 111110 00 1112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 016027 292 KILCKEDKLDLAIQVSKEMKCRGCDID---LDTSTMLIHLLCRMYKFDEASAEFEDMIRR----GLVPH-YLTFKRLNDE 363 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~ 363 (396)
..+...|+.+.|..++........... ...+..+..++...|++++|...+++.... |..++ ..+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344557899999988777654221111 111345677888899999999999988652 32222 2356667778
Q ss_pred HHHcCCchHHHHHHHHHhccc
Q 016027 364 FKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~ 384 (396)
+.+.|+.++|...+.+..+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999999876543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-08 Score=83.66 Aligned_cols=215 Identities=8% Similarity=0.001 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
++..+-.++...++.++|+...++++... |.+..+|+....++...| ++++++..++++.+.+|. +..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhH
Confidence 44455556666788888999999888875 777778888888888877 578899998888887554 666777
Q ss_pred HHHHHHHhcCCh--hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNV--KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 114 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
.....+.+.|+. ++++.+++++.+...+ |..+|+....++...|+++++++.++++++.+ +-+...|+....++.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 665555566653 6778888888877554 77888888888888888888888888888876 3455566655555544
Q ss_pred c---CCH----HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 016027 192 A---GRF----EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA----GDLEGASKILKMMISRGFLPSPTTYNYFFRYFS 260 (396)
Q Consensus 192 ~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 260 (396)
. |.. ++.+....+++...+ .+...|+.+...+... +...+|...+.+....++ .+......|+..|+
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence 3 222 456667767766655 3667777777777662 334557777777665432 25666666777665
Q ss_pred c
Q 016027 261 K 261 (396)
Q Consensus 261 ~ 261 (396)
.
T Consensus 267 ~ 267 (320)
T PLN02789 267 E 267 (320)
T ss_pred h
Confidence 4
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=94.03 Aligned_cols=250 Identities=14% Similarity=0.082 Sum_probs=131.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
+-+.-.|++..++.-.+ .... ....+.....-+.+++...|+++.++ .++... ..|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~--~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF--SPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS--TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh-ccCC--CchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccc
Confidence 34445677777775555 2222 11123344455666777777766543 233222 25555565555554443344
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVY-NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
-+.++.-++.....+..++..++ .....++...|++++|++++... .+.......+.+|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443333222222222 22234455567777777766542 345555666677777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 239 MMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 776542 22333334443322 23567777777776543 34566666777777777777777777777766554
Q ss_pred CCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKF-DEASAEFEDMIR 347 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 347 (396)
.. ++.+...++.+....|+. +.+.+.+.++..
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 33 556666666666666666 445566666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.7e-10 Score=89.93 Aligned_cols=252 Identities=13% Similarity=0.091 Sum_probs=158.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++-+.-.|++..++.-.+ .... +.+........+.+++...|+++.++.- ... +..|.......+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~----~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~---~~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF----SPENKLERDFYQYRSYIALGQYDSVLSE---IKK---SSSPELQAVRLLAEYL 76 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS----TCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-T---TSSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC----CchhHHHHHHHHHHHHHHcCChhHHHHH---hcc---CCChhHHHHHHHHHHH
Confidence 344556788888876555 2221 1123445566778888888887755432 222 2256666666666555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
...++-+.++.-+++....+..+ +..........+...|++++|++++... .+.......+.++.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 44455556666555554443332 2333333445666778888888877542 3566777778888899999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYC----KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
.+.++.|.+.+ .| .+...++.++. ..+.+.+|..+|+++... ..+++.+.+.+..+....|++++|.+++.+
T Consensus 151 ~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999887742 22 33444444433 234688999999998765 556888888888888899999999999988
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 016027 275 MIESGYTPDRLTYHILLKILCKEDKL-DLAIQVSKEMKCR 313 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 313 (396)
....+.. ++.+...++.+....|+. +.+.+.+.++...
T Consensus 227 al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8776533 566777777777777877 6677788887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-07 Score=78.71 Aligned_cols=336 Identities=12% Similarity=0.115 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..|...++.+..+|+...-...|+++...-++ .....+|...+.-....+-++-+..++++..+. ++..-+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv---tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~e 173 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPV---TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV------APEARE 173 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch---HhhccchHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHH
Confidence 38899999999999999999999999886422 334567888888888889999999999999887 334466
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC------CC------------------------------------CC--hhHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKEN------VT------------------------------------PN--VVTYGT 149 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~------------------------------------~~--~~~~~~ 149 (396)
..+..+.+.+++++|-+.+...+... .+ +| -..|..
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 67777888888888887776654310 00 01 124678
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------------------------------------
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA------------------------------------- 192 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------------------- 192 (396)
|...|.+.|.+++|..+|++.... ..+..-|+.+.++|+.-
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 888899999999999998887665 22222333333332211
Q ss_pred -----------------------------CCHHHHHHHHHHHHhcCCCC------chhhHHHHHHHHHhcCChHHHHHHH
Q 016027 193 -----------------------------GRFEEVSGMMERFLVCEPGP------TMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 193 -----------------------------~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
|+..+-...|.++... +.| -...|..+...|-..|+.+.|..+|
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1111222222222211 111 1234566667777777777777777
Q ss_pred HHHHHCCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-----------C------ChhhHHHHHHHHHhc
Q 016027 238 KMMISRGFLPS---PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-----------P------DRLTYHILLKILCKE 297 (396)
Q Consensus 238 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~ 297 (396)
++..+...+.- ..+|......-.+..+++.|+++++......-. + +...|..++..-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 77776533311 234445555555667777777777665432111 0 122344444445556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---cCCchHH
Q 016027 298 DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY-LTFKRLNDEFKK---RGMTALA 373 (396)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A 373 (396)
|-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..=..|+. ..|+..+.-+.+ .-..+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7777777788887776554 5555555555566666778888887776653224443 467766665533 2357888
Q ss_pred HHHHHHHhc
Q 016027 374 QKLCNVMSS 382 (396)
Q Consensus 374 ~~~~~~~~~ 382 (396)
..+|++..+
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 888888655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-07 Score=79.38 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+.+=+..+...|++++|.+...++.... |.+..++..-+-++.+.+++++|+.+.+.-... ..+...+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-----pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----~~~~~~~f 83 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-----PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----LVINSFFF 83 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-----CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh----hhcchhhH
Confidence 456667778899999999999999999863 888888999999999999999999776653321 11222223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.-+.+..+.+..++|+..++- ..+ +..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445667789999999999882 333 34477777888999999999999999997764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-08 Score=84.28 Aligned_cols=208 Identities=13% Similarity=0.029 Sum_probs=163.0
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG-MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+...++.++|+.++.+++.. .|+ +..+|..-..++...| ++++++..++++...+ |.+..+|+.....+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-----pknyqaW~~R~~~l 116 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-----PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--Cch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-----CcchHHhHHHHHHH
Confidence 456678999999999999984 565 3568888888888888 6899999999999875 88888899888777
Q ss_pred HHcCCh--HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc---
Q 016027 83 CKQGRV--KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL--- 157 (396)
Q Consensus 83 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 157 (396)
.+.|+. +++++.++++...++. |..+|+...-++...|+++++++.++++++.++. |..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence 777763 7789999999987665 8899999999999999999999999999998765 777887776665544
Q ss_pred CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 158 RR----VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 158 ~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
|. .++.+.+...++... +-+...|+-+...+.. .+...+|...+.+....++ .+......|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 22 246777777777764 5567777777777766 2445678888888777544 366777888888875
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-09 Score=92.37 Aligned_cols=250 Identities=18% Similarity=0.176 Sum_probs=167.5
Q ss_pred HHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 20 DKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 20 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
.+-..+..|+ ..+|..+|..|+..|+.+.|- +|..|.-. +.|.+..+|+.++.+....++.+.+.
T Consensus 15 ~~e~~gi~Pn---RvtyqsLiarYc~~gdieaat-if~fm~~k----sLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 15 LHEISGILPN---RVTYQSLIARYCTKGDIEAAT-IFPFMEIK----SLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHHHhcCCCc---hhhHHHHHHHHcccCCCcccc-chhhhhcc----cccccchhHHHHHhcccccccccCCC-------
Confidence 3444567898 668999999999999999988 88877765 46888888999999988888877764
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCCChhHHHH--------------HHHHHHccC
Q 016027 100 ELDQSWAPTVRVYNILLNGWFRSKNVKD---AERFWLEMR----KENVTPNVVTYGT--------------LVEGYCRLR 158 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~~--------------l~~~~~~~~ 158 (396)
.|...+|..|..+|...||... +.+.+.... ..|+......+-. .+....-.|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 4678899999999999998654 333222221 2233222222211 122222234
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
-++.+++++..+..... .. .+..+++-+... ..+++-..+.+...+ .+++.+|..++.+-.-.|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~-~~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAW-NA--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccc-cc--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 44444444433321110 00 111123322222 234444444444433 478889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 016027 238 KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (396)
.+|.+.|++.+.+-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999888888877765 77788888888899999999999999888777776444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-09 Score=84.67 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch---hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA---SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
....+..++..+...|++++|+..|+++.... |.++ .++..++.++...|++++|...++++.+..|+....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 46789999999999999999999999998864 4333 577889999999999999999999998876653333
Q ss_pred hHHHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 109 VRVYNILLNGWFRS--------KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 109 ~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
...+..+..++... |++++|.+.|+.+....+. +...+..+..... ... .. ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~ 167 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AG 167 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HH
Confidence 33566666666654 7788999999998876322 2223322221111 000 00 01
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPG--PTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
....+...+.+.|++++|+..++.+....+. .....+..+..++...|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1124566788999999999999998876442 23567888999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-08 Score=81.25 Aligned_cols=190 Identities=11% Similarity=0.010 Sum_probs=136.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV--VT 146 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 146 (396)
+..+..+..++..+...|++++|...|+++....|..+.....+..+..++...|++++|...++++.+..+.... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 5667788899999999999999999999998875543223357788899999999999999999999876432111 24
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH
Q 016027 147 YGTLVEGYCRL--------RRVDRAIRLVKEMRKEGIEPNA-IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTY 217 (396)
Q Consensus 147 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (396)
+..+..++... |++++|.+.++.+.+. .|+. .....+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 55555555544 7788899999988876 3332 22222211110 000 00 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 218 TSLVKGYCKAGDLEGASKILKMMISRGF--LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
..+...+.+.|++++|...+....+... +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2566789999999999999999987632 223568889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-07 Score=90.15 Aligned_cols=342 Identities=12% Similarity=0.009 Sum_probs=216.3
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC--CCC--chhHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN--FDS--GASLFEILLD 80 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~--~~~~~~~l~~ 80 (396)
+...|+++.+..++..+-......+ .......+..+...|++++|...+..+...-...+ .++ .......+..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~---~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLEN---PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcC---cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3456777776666544311100111 22344556667789999999999988765321100 011 1223344556
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CChhHHHHHHHH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVT-PNVVTYGTLVEG 153 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~ 153 (396)
.+...|++++|...++.+....+...+ .....+.+...+...|++++|...+.+.... |.. ....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 677899999999999998763222111 1234566677778899999999999887643 111 112345666778
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCchhhHHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKE----GIE--P-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC----EPGPTMVTYTSLVK 222 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 222 (396)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887653 211 1 2233445566777889999999998887653 11112344555677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-ChhhH-----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHH
Q 016027 223 GYCKAGDLEGASKILKMMISRGFLP-SPTTY-----NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDR---LTYHILLKI 293 (396)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~ 293 (396)
.+...|+++.|...+.......... ....+ ...+..+...|+.+.|..++............ .....+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 8888999999999998875431110 11111 11224445678999999988775442211111 113456677
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 294 LCKEDKLDLAIQVSKEMKCR----GCDI-DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
+...|+.++|...++++... +..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999988753 2221 22456667788899999999999999998743
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.7e-08 Score=89.53 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+.-.|...+....+.++.++|.+++++++..-....-..-..+|.++++.....|.-+...++|+++.+.. ....+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHHH
Confidence 34455566666666666666666666555531111011122344444444444455555555555555431 01334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN---AIVYNTVIDG 188 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 188 (396)
|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+. -|. .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 455555555555555555555555544 1124445555555555555555555555555443 121 2222233333
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
-.+.|+.+.+..+|+..+...|. -...|+..+..-.+.|+.+.+..+|+++...++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 44455555555555555544332 3345555555555555555555555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-07 Score=86.64 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=162.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
...+|..|+..+...|++++|+++.+...... |.....|..++..+...++..++.-+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-----P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-----KKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 36799999999999999999999999887764 77777888888888888886555444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
.++.......++..+..++..|...+ -+..++..++.+|-+.|+.+++..+|+++++.. +-++.+.|.+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 33333444455555555555555532 245578888888989999999999999998886 6678888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNL 271 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 271 (396)
. +.++|.+++.++... +...+++..+.+++..+....+. +...+..+.+.....-
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------- 217 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------- 217 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------
Confidence 8 888888888887653 55566777888888887776322 3223222222211110
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 016027 272 YRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC 330 (396)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (396)
+..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 -------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112334444556666777777777777777776544 5555666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-09 Score=81.20 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=114.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..|...|++............ |. ..+...++.++++..++...+.+ |.+...|..++..|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-----------~~~~~~~~~~~~i~~l~~~L~~~-----P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-----------HQFASQQTPEAQLQALQDKIRAN-----PQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-----------ccccCchhHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
Confidence 457778888776554322222 11 01113667788888888888875 88888888888889
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW-FRSKN--VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
...|++++|...|+++...+|. +...+..+..++ ...|+ .++|.+++++..+..+. +..++..+...+...|+
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQAD 159 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCC
Confidence 8999999999999988887655 777788887764 56676 48899999888887544 77788888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVY 182 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~ 182 (396)
+++|+..|+++.+.. +|+..-+
T Consensus 160 ~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 160 YAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHHhhC-CCCccHH
Confidence 999999998888874 4454443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-09 Score=76.64 Aligned_cols=121 Identities=11% Similarity=-0.093 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHH
Q 016027 15 WCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEY 94 (396)
Q Consensus 15 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 94 (396)
..+++++++. .|+ .+...+..+...|++++|...|+++...+ |.+..++..++.++...|++++|...
T Consensus 13 ~~~~~~al~~--~p~-----~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 13 EDILKQLLSV--DPE-----TVYASGYASWQEGDYSRAVIDFSWLVMAQ-----PWSWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHc--CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3456777773 454 46678888999999999999999998875 88889999999999999999999999
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 95 FHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
|+.+...+|+ +...+..+..++...|++++|...|+..++..+. +...+....
T Consensus 81 y~~Al~l~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~ 133 (144)
T PRK15359 81 YGHALMLDAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQ 133 (144)
T ss_pred HHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 9999987655 7888899999999999999999999998876422 444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-08 Score=75.75 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=111.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+..+ ..+...+...|+-+.+..+........ ..+.......+....+.|++..|...+.+..... ++|..+|+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~ 138 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWN 138 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhh
Confidence 555555 666666777777777776666654422 2255555566777777777777777777766553 44777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+.-+|.+.|+++.|..-|.+..+.. +-++...+.+...+.-.|+++.|..++......+. -+..+-..+.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcC
Confidence 77777777777777777777776652 34556667777777777777777777777666533 35666666777777777
Q ss_pred ChHHHHHHHHHHHH
Q 016027 229 DLEGASKILKMMIS 242 (396)
Q Consensus 229 ~~~~a~~~~~~~~~ 242 (396)
+++.|.++...-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 77777777655443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-07 Score=82.29 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=192.8
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
..||--..-..+...+...|-...|..+|++.. .|...+.+|...|+..+|..+..+..++ +|+...
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l 459 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL 459 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh
Confidence 467777777889999999999999999998754 5777888999999999999999888773 679999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 147 YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
|..+........-+++|.++.+..-.. .-..+.....+.++++++.+.|+...+.++ ....+|-.+.-+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHH
Confidence 999998887777888888887765332 222333334457999999999999888755 467889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQV 306 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 306 (396)
.+++..|.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.++.|.+.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 999999999999998864 3367889999999999999999999999999987 44677788888888999999999999
Q ss_pred HHHHHHcCC-CCChhhHHHHHHHHH
Q 016027 307 SKEMKCRGC-DIDLDTSTMLIHLLC 330 (396)
Q Consensus 307 ~~~~~~~~~-~~~~~~~~~l~~~~~ 330 (396)
+.++..... .-|..+...++....
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHHHH
Confidence 998875311 125555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-08 Score=76.77 Aligned_cols=153 Identities=7% Similarity=0.064 Sum_probs=120.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
..+..|...|+++......+.... +.. .+...++.+++...++...+.+|. +...|..+..
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~-------~~~---------~~~~~~~~~~~i~~l~~~L~~~P~---~~~~w~~Lg~ 81 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD-------PLH---------QFASQQTPEAQLQALQDKIRANPQ---NSEQWALLGE 81 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC-------ccc---------cccCchhHHHHHHHHHHHHHHCCC---CHHHHHHHHH
Confidence 345578899999887655433221 110 122367778888899998887665 8899999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH-HccCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY-CRLRR--VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
.+...|++++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|+
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCC
Confidence 999999999999999999987644 777888888764 66676 599999999999985 5577888889999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 016027 195 FEEVSGMMERFLVCEPG 211 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~ 211 (396)
+++|+..|+++.+..+.
T Consensus 160 ~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 160 YAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 99999999999987553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-07 Score=84.75 Aligned_cols=360 Identities=11% Similarity=0.007 Sum_probs=215.9
Q ss_pred CchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChH
Q 016027 10 EFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVK 89 (396)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (396)
+...|+..|-+.++. .|+. ..+|..++..|...-+...|.+.|+++.+.+ +.+......+...|+...+++
T Consensus 473 ~~~~al~ali~alrl--d~~~--apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-----atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSL--APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-----ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----chhhhhHHHHHHHhhccccHH
Confidence 467788888777774 4442 4589999999999999999999999999987 788888999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q 016027 90 AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 169 (396)
.|..+.-...+..+. ..-...|....-.|.+.+++..+..-|+......+. |...|..++.+|...|.+..|+++|.+
T Consensus 544 ~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 999985554443211 011223444555677788999999999988877544 888999999999999999999999988
Q ss_pred HHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCC------CCchhhHHHHHHHHHhcCChHHHHHH-----
Q 016027 170 MRKEGIEPNAIVYNT--VIDGLVEAGRFEEVSGMMERFLVCEP------GPTMVTYTSLVKGYCKAGDLEGASKI----- 236 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~----- 236 (396)
.... .|+. +|.. ..-..+..|.+.+|+..+........ .--..++..+...+...|-...+.+.
T Consensus 622 As~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 622 ASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8765 3433 2222 22335667889988888877654211 11122222222222223322233333
Q ss_pred --HHHHHHCCCCCChhhHHHHHHHHh-----------------------ccCCH---H---HHHHHHHHHHHCCCCCChh
Q 016027 237 --LKMMISRGFLPSPTTYNYFFRYFS-----------------------KFGKV---E---DAMNLYRKMIESGYTPDRL 285 (396)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~ 285 (396)
|.-........+...|..+..+|. ..+.. + -+.+.+-.-.+ ...+..
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~ 776 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMY 776 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccc
Confidence 322222211112222222222211 11111 0 00111100000 112233
Q ss_pred hHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 016027 286 TYHILLKILCK----E----DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTF 357 (396)
Q Consensus 286 ~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 357 (396)
+|..++..|.+ . .+...|...+.+.++..-. +..+|+.|.-. ...|++.-|.-.|-+-.... +....+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhe
Confidence 44444443332 1 2234677777777665332 66666666654 55566666666665554432 3455677
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 358 KRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 358 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
..+...+.+..+++.|...|.+.+...+...
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 7777778888888888888888877766544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-07 Score=86.12 Aligned_cols=239 Identities=12% Similarity=0.119 Sum_probs=184.8
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 132 WLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEP---NAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
|+++.... +-+...|...|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444432 225678888899999999999999999998865 1111 234677777777778888889999999987
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhh
Q 016027 208 CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-PDRLT 286 (396)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 286 (396)
. .....+|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++++.-++ -....
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 4 334567889999999999999999999999987 3347788999999999999999999999998876221 13445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 016027 287 YHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY--LTFKRLNDEF 364 (396)
Q Consensus 287 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~ 364 (396)
....+..-.+.|+.+.++.+|+......++ ....|+.+++.-.++|+.+.+..+|++.+..++.|.. ..|...+.--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 566667777899999999999999877554 7889999999999999999999999999998877664 3455555444
Q ss_pred HHcCCchHHHH
Q 016027 365 KKRGMTALAQK 375 (396)
Q Consensus 365 ~~~g~~~~A~~ 375 (396)
-+.|+-+.+..
T Consensus 1682 k~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1682 KSHGDEKNVEY 1692 (1710)
T ss_pred HhcCchhhHHH
Confidence 55676554433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-06 Score=70.66 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 230 LEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTP-DRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
.+....+++++...-...-.-+|..++....+....+.|..+|.++.+.+..+ +..+.++++..++ .++.+-|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55556666666554222233467788888888888999999999999887666 6667777777665 478899999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHY--LTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.-.+.- .-++..-...+..+...++-..+..+|++.+..++.|+. ..|..++.--..-|+...+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 877652 225566677888889999999999999999988666553 6899999888889999999888877533
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-07 Score=73.39 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=129.1
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
|... ..+...+...|+-+....+....... .+-+......++....+.|++..|+..+++..... ++|...++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 56667777788888887777765443 23355666778888888999999999998888764 778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
+|.+.|+++.|..-|.+..+..+ .+....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++.+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 99999999999999998888755 36677888888888899999999999888877433 67777778888888899999
Q ss_pred HHHHHHHHHH
Q 016027 268 AMNLYRKMIE 277 (396)
Q Consensus 268 a~~~~~~~~~ 277 (396)
|.++...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9888765443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-06 Score=78.52 Aligned_cols=181 Identities=12% Similarity=0.046 Sum_probs=116.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----CCCCchhHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK----NFDSGASLFEILL 79 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 79 (396)
.|...|+.+.|.+-.+ .++ |...|..++++|.+..+++-|.-.+..|....... ....+...-....
T Consensus 737 fyvtiG~MD~AfksI~-~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQ-FIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHH-HHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH
Confidence 4667789999977643 333 14589999999999999998888777665533211 0011113333445
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
......|-+++|+.+|++.... ..|=..|...|.|++|.++-+.=-. +. =..||.....-+-..++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhcc
Confidence 5556789999999999987753 3334456678999999988664221 11 23466666666677788
Q ss_pred HHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 160 VDRAIRLVKEM----------RKEG---------IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 160 ~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.+.|+++|++. +... -..|...|.-....+-..|+.+.|+.+|..+..
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 88888887653 2111 112444455555666677888888888877643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-07 Score=81.68 Aligned_cols=218 Identities=13% Similarity=0.057 Sum_probs=162.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
.-..+...+...|-...|..+++++. .+...+.+|...|+..+|..+..+..+ -+|+...|..++....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33556677777788888888887653 455677788888888888888877776 3467778888877776
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
...-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.+ +.-..+|..+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666677887777765443 22233333445788888888888877664 3356778878888888899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 306 VSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++...+
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99888876443 67889999999999999999999999998866 4455677777777788899999999988876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.4e-07 Score=82.04 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=173.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+..++..|+..+...+++++|.++.+......|+ ....|..+...+.+.++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 667888999999999999999999999988776544 444455555567777775555444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.++.......++.-+..++..+.+. .-+...+..+..+|.+.|+.++|..+|+++++..+ -++.+.+.+...|+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-
Confidence 3334444455554555555566654 33556788899999999999999999999999875 4888999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 229 DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
+.++|.+++.+.... +...+++..+..+|.++....+. +...+..+.+.....-...
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~------- 220 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFT------- 220 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccc-------
Confidence 999999998887764 56667899999999999887422 3333333333332221111
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 016027 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFK 365 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 365 (396)
--..++..+-..|-..++|+++..+++.+++.. +-|......++.+|.
T Consensus 221 --------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 --------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred --------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 133455556667888899999999999999865 346667777877775
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-07 Score=85.08 Aligned_cols=137 Identities=7% Similarity=0.040 Sum_probs=94.4
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
.++.++.++..|+.+....|.+++|..+++.+.+..|+ +......++..+.+.+++++|+..+++.....+. +...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHH
Confidence 35666777777777777777777777777777766544 5566666777777777777777777777766433 5556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 147 YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
...+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666777777777777777777777642 344666777777777777777777777776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-07 Score=79.26 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=59.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
+.+.....+|.+|+.+++.+.++. .-...|..+...|...|+++.|.++|.+. ..++-.+..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 334445556666666666666552 23334555666666667777666666543 1244455666667777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
++|.++-++... .......|.+-..-.-..|++.+|.++|
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 666666554432 2223334444444444555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-07 Score=85.50 Aligned_cols=143 Identities=11% Similarity=0.049 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..|+.+..+.|++++|..+++.+.+.. |.+..++..++..+.+.+++++|+..++++...+|. +....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHH
Confidence 6799999999999999999999999999985 888999999999999999999999999999987655 78888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
..+..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|+...+.- .+....|+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 9999999999999999999999998543 368899999999999999999999999998763 3444444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-06 Score=65.61 Aligned_cols=251 Identities=15% Similarity=0.119 Sum_probs=152.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++-+.-.|++..++..-.+.... +.+...-..+.++|...|++.....-... +-.|.......+....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~------~~~~e~d~y~~raylAlg~~~~~~~eI~~------~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS------KTDVELDVYMYRAYLALGQYQIVISEIKE------GKATPLQAVRLLAEYL 82 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc------cchhHHHHHHHHHHHHccccccccccccc------ccCChHHHHHHHHHHh
Confidence 45566678887776655544433 35556666677888888877654433222 2233344444444444
Q ss_pred HhcCChhHHH-HHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAE-RFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
..-++.++-+ ++.+.+.......+......-+..|++.+++++|++...... +......-+..+.+..+.+-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 344444444334343444455567788888888888776521 333333444556677788888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCK----AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
.+.+++|.+. .+..+.+.|..++.+ .+.+.+|.-+|+++.+. .+|++.+.+-...++...|++++|..+++.
T Consensus 157 ~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 8888888763 245566666666554 34577888888888775 466777888888888888888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 016027 275 MIESGYTPDRLTYHILLKILCKEDKLDL-AIQVSKEMKCR 313 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 313 (396)
...+... ++.+...++.+....|...+ ..+.+.++...
T Consensus 233 aL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 233 ALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8777544 56666666655555565433 34555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-06 Score=76.48 Aligned_cols=362 Identities=8% Similarity=-0.028 Sum_probs=205.7
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
|...+++.+|+.-|+.+++. .|. +...|..++++|.+.|++..|++.|.++...+ |.+...-.......+.
T Consensus 572 yLea~n~h~aV~~fQsALR~--dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-----P~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRT--DPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-----PLSKYGRFKEAVMECD 642 (1238)
T ss_pred ccCccchhhHHHHHHHHhcC--Cch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-----cHhHHHHHHHHHHHHH
Confidence 55677888888888888874 455 46688888888888888888888888888875 5555555666667777
Q ss_pred cCChHHHHHHHHHHhhccCCC----CCChHHHHHHHHHHHhcCCh-------hHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSW----APTVRVYNILLNGWFRSKNV-------KDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
.|.+.+|+..+......-... .--..++..+...+...|=. +++++.|.-........+...|..+..+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 888888888877765431110 01122222222222223322 3333333322222212233333333222
Q ss_pred HHccCCHH--H----HHHHH-HHHHHcCC--------------------CCCHHHHHHHHHHHHH----cC----CHHHH
Q 016027 154 YCRLRRVD--R----AIRLV-KEMRKEGI--------------------EPNAIVYNTVIDGLVE----AG----RFEEV 198 (396)
Q Consensus 154 ~~~~~~~~--~----a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~~----~~~~a 198 (396)
|.-.-..+ . ...++ .+....+. ..+..+|..++..|.+ .| +...|
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 21111000 0 00011 11111111 1123334444433333 22 23467
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
+..+.+..+... .+..+|+.|.-. ...|++.-+...|-+-.... +....+|..+...+....+++.|...|......
T Consensus 803 i~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 803 IRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 777777776533 356667766544 66688888888887776654 336678888888889999999999999988776
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhhHHHHHHHHHhcCChhHHHHHH----------HH
Q 016027 279 GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC----RGCDIDLDTSTMLIHLLCRMYKFDEASAEF----------ED 344 (396)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----------~~ 344 (396)
. +.+...|-.........|+.-++..+|..--. .|-.++..-|-.........|+.++-+... +.
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 4 23555665555555667888888888776322 222344444444444445556555444333 33
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 345 MIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 345 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
... +.+.+...|........+.+.+..|.+...++
T Consensus 959 yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333 33445567777777777788888777776664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-07 Score=68.46 Aligned_cols=95 Identities=12% Similarity=-0.078 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
+..++..+...|++++|...|+.+...+|. +...|..+..++...|++++|...|+......+ .+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 445666677777777777777777765443 666777777777777777777777777776543 3666777777777
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 016027 155 CRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~ 173 (396)
...|++++|+..|+..++.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-06 Score=65.42 Aligned_cols=249 Identities=14% Similarity=0.043 Sum_probs=145.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
+-+.-.|++..++..-....... -+...-.-+.++|...|++.....-.. .. -.|....+..+......-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~----~~~e~d~y~~raylAlg~~~~~~~eI~---~~-~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK----TDVELDVYMYRAYLALGQYQIVISEIK---EG-KATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc----chhHHHHHHHHHHHHcccccccccccc---cc-cCChHHHHHHHHHHhhCcch
Confidence 44555677777766665544321 233333445566666776655443322 21 13344444444444444444
Q ss_pred HHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHH
Q 016027 160 VDRAI-RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 160 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
.+.-+ ++.+.+.......+......-...|...|++++|++..... .+......=...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 34444444433333333333445677788888888777762 133344444455667777888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 239 MMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
+|.+.. +..+.+.|..++.+ .+....|.-+|+++-+. ..|++.+.+....++...|++++|..+++.+....
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 887642 55666666666543 34567777788887664 46777777777778888888888888888887765
Q ss_pred CCCChhhHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKFDEA-SAEFEDMIR 347 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 347 (396)
.. ++.+...++.+-...|...++ .+.+.++..
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 54 666666666655555655443 345555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-05 Score=73.12 Aligned_cols=235 Identities=16% Similarity=0.158 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+.+|..++.+-.+.|...+|++-|-++. |+..|..++....+.|.|++-.+.+....+..-.|... ..|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad--------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD--------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC--------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 3566667777666777766666654432 44566666777777777777666666555554444433 3455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (396)
-+|++.++..+..+++ .-|+......+.+-|...|.++.|.-+|... .-|..+...+...|++.
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHH
Confidence 6666666665554433 1355555556666666666666665555432 24566666666777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 232 GASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
.|.+.-++.. +..+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++...
T Consensus 1238 ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1238 GAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 6665544322 445666666666655544322 23333334444555667777777777777777766654
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 312 CRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
... ......|+.|.-.|.+ -++++..+.++-.
T Consensus 1307 GLE-RAHMgmfTELaiLYsk-ykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1307 GLE-RAHMGMFTELAILYSK-YKPEKMMEHLKLF 1338 (1666)
T ss_pred chh-HHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 321 1234455555555554 2345554444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-05 Score=72.46 Aligned_cols=303 Identities=14% Similarity=0.149 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
++.......++...+-+.+-+++++++.-.+.. +..+....+.|+-...+. +..+..++.+++..-+ .|+
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~--Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD---a~~---- 1053 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSV--FSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APD---- 1053 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc--cccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC---chh----
Confidence 446666778888888888888888888765432 344455555555555554 3456677777665431 222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
+...+...+-+++|..+|++.- .+..+.+.|+.- -+..++|.++-++. ..+..|..+..+-.+.
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhc
Confidence 3444556677788888887643 244555555543 34555555544433 2345666777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
|...+|++-|-+. .|+..|..++....+.|.|++-...+...++..-.|. .=+.++-+|.+.++..+.++++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence 7777776665543 3455667777777777777777777666665543333 3345666666666665554443
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCChhhHHHHHHHHHhc
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR--------------------GCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~ 332 (396)
. .|+......+..-|...+.++.|.-+|..+..- .-..+..+|..+-.+|...
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 1 244444444444444444444444443322100 0001445555555555554
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 333 YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 333 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
+.+.-| +|-..++.....-+..++.-|...|-+++-+.+++.-.
T Consensus 1263 ~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1263 EEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 443322 22223344455567778888888888888888887643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-07 Score=75.31 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN-VVTYGTLVEG 153 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 153 (396)
..-....+...|++++|+..++.+....|+ |...+......+.+.++.++|.+.++++... .|+ ......+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD---NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 334444444555666666666665554332 4444455555556666666666666665554 223 3344455555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
+.+.|++.+|+.+++...... +.|+..|..|..+|...|+..++.....+.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666666665555542 445556666666666666655555554444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-06 Score=64.64 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=101.2
Q ss_pred cCchhHHHHHHHHhCCCC----CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 9 KEFDSAWCLLLDKIGGHE----VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
.+.++.++++..++.... .++. ...+..++-+....|+.+.|..+++.+... +|.+..+-..-+..+-.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~--w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-----fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEI--WTLYEQVFIAALDTGRDDLAQKCINQLRDR-----FPGSKRVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHH
Confidence 345555555555543211 1220 123344555556666666666666666554 24444444444444555
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|++++|.++++...+.+|. |..++-.-+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhccCcc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 56666666666666664432 4555554444445555555666665555544 3446666666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhc
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAG---RFEEVSGMMERFLVC 208 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 208 (396)
-.++++.-.. |.++..+..+...+.-.| +.+-+.++|.+.++.
T Consensus 175 fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 175 FCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6666666552 334444555555544433 344456666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=67.67 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=87.2
Q ss_pred HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 016027 17 LLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 17 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 96 (396)
.+.+++.. .|+ +......++..+...|++++|.+.|+.+...+ |.++..+..++..+...|++++|..+++
T Consensus 5 ~~~~~l~~--~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLGL--DSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----PYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHcC--Chh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666663 343 24567788888888999999999998888764 7788888889999989999999999998
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.+...+| .+...+..+..++...|++++|...|+...+.
T Consensus 76 ~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 76 LAAALDP---DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8877543 36777778888888889999999998888775
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.9e-06 Score=62.99 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=115.1
Q ss_pred CChhHHHHHHHHHHhC---C-CCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 123 KNVKDAERFWLEMRKE---N-VTPNVV-TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+-|...++.+.+. ++-+..+-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655432 2 333333 2344455555667777777777777665 23333333333344556677777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|+++++.+++.++ .|..++---+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 7777777777654 35555655555556666666777777776665 455777777777777777777777777777766
Q ss_pred CCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 016027 278 SGYTPDRLTYHILLKILCKED---KLDLAIQVSKEMKCRG 314 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 314 (396)
.. +.++..+..+...+...| +.+.+.++|.+..+..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 53 234555555555544443 4556777777777653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-09 Score=54.23 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 349 GLVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 349 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-07 Score=66.33 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+......++..+...|++++|.+.|+.+...+|. +...+..+..++...|++++|...++.....+ +.+...+.
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 445555666667777777777777777776665433 56666677777777777777777777666553 23555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|.+.++...+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666677777777777777666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-05 Score=70.90 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
..+....+.|-+++|..+|++..+. ..|-..|...|.|++|.++-+.-... .-..+|..-..
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-------------DLlNKlyQs~g~w~eA~eiAE~~DRi-----HLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-------------DLLNKLYQSQGMWSEAFEIAETKDRI-----HLRNTYYNYAK 866 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHhcccHHHHHHHHhhccce-----ehhhhHHHHHH
Confidence 3455567889999999999988774 34556677788888888876553322 12345666666
Q ss_pred HHHhcCChhHHHHHHHHHH----------hCCC---------CCChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 118 GWFRSKNVKDAERFWLEMR----------KENV---------TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
-+-..++.+.|++.|++.. ...+ ..|...|.-.....-..|+.+.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 6666778888888776532 1110 11333444444455556777777777766543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=73.22 Aligned_cols=149 Identities=17% Similarity=0.085 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+++..+..+...|++++|+..++.++.. .|.|+.........+.+.|+.++|.+.++++....|. ....+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~ 377 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQ 377 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHH
Confidence 447888888889999999999999998886 4888888899999999999999999999999987654 36677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+..++.+.|++.+|+.+++...... +-|+..|..|.++|...|+..++.....+.... .
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~------------------~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL------------------A 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh------------------C
Confidence 888999999999999999999988774 448999999999999999999888877776554 3
Q ss_pred CCHHHHHHHHHHHHhc
Q 016027 193 GRFEEVSGMMERFLVC 208 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~ 208 (396)
|+++.|+..+....+.
T Consensus 439 G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 439 GRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00019 Score=65.44 Aligned_cols=229 Identities=12% Similarity=0.084 Sum_probs=152.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+--....+++.+|++-..++.+.. |....+-..=+-.+.+.|+.++|..+++......+. |..+...+-.+|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~-----Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y 87 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH-----PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVY 87 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHH
Confidence 344567889999999999888862 443333333344456789999999888876654222 778888888889
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR----- 194 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 194 (396)
...++.++|..+|++..+. .|+......+..+|.+.+.+.+-.+.--++.+. .+.++..+-++++...+.-.
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccc
Confidence 9999999999999988875 466777778888888888776644444444332 34555666666666554321
Q ss_pred -----HHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHhcCChHHHHHHH-HHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 195 -----FEEVSGMMERFLVCE-PGPTMVTYTSLVKGYCKAGDLEGASKIL-KMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 195 -----~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
..-|.+.++.+.+.+ ..-+..-...-.......|++++|.+++ ....+.-...+...-+.-+..+...++|.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 233556666666554 2222222333344556678889998888 344443334345555667778888889999
Q ss_pred HHHHHHHHHHCC
Q 016027 268 AMNLYRKMIESG 279 (396)
Q Consensus 268 a~~~~~~~~~~~ 279 (396)
..++-.++...+
T Consensus 245 l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 245 LFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhC
Confidence 888888888875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.4e-07 Score=63.07 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
.++..++..+.+.|++++|.+.|+.+....+ +.+....++..++.++.+.|++++|.+.|+.+....|+......++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP--KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3678888888889999999999988887531 11222456777888888889999999999888876555444456677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
.+..++.+.|++++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 78888888888888888888888764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-08 Score=51.93 Aligned_cols=30 Identities=53% Similarity=1.011 Sum_probs=12.1
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q 016027 140 VTPNVVTYGTLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 169 (396)
+.||..+|++++.+|++.|++++|.+++++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-06 Score=64.10 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHccCCHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV--VTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 162 (396)
.++...+...++.+....++........-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555543332222333334445555566666666666665554322221 123334555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMER 204 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 204 (396)
|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655443222 22333444455556666666666655554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=71.27 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=147.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+|....++++|+.+- ++. ..|. -...-....+.+...|+-++|-++-. .+ . . -...++.|
T Consensus 565 gmy~~lhkwde~i~la-e~~---~~p~--~eklk~sy~q~l~dt~qd~ka~elk~----sd-----g---d-~laaiqly 625 (1636)
T KOG3616|consen 565 GMYQELHKWDEAIALA-EAK---GHPA--LEKLKRSYLQALMDTGQDEKAAELKE----SD-----G---D-GLAAIQLY 625 (1636)
T ss_pred HHHHHHHhHHHHHHHH-Hhc---CChH--HHHHHHHHHHHHHhcCchhhhhhhcc----cc-----C---c-cHHHHHHH
Confidence 4556666677776652 222 2443 12233456677777888887765422 10 1 1 23467888
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
.+.|.+..|.+.-..-.. ...|......+..++.+..-+++|-.+|+++... .-.+.+|.+..-+.+
T Consensus 626 ika~~p~~a~~~a~n~~~----l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~k 692 (1636)
T KOG3616|consen 626 IKAGKPAKAARAALNDEE----LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGK 692 (1636)
T ss_pred HHcCCchHHHHhhcCHHH----hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHH
Confidence 899988887765433222 2235666666666666666666666666655321 112222222222333
Q ss_pred HHHHHHHH----------------HHcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 016027 163 AIRLVKEM----------------RKEGIEPN--------AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT 218 (396)
Q Consensus 163 a~~~~~~~----------------~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (396)
|+++-+-. ...| ..| .......+.+.....+|.+|+.+++.+..... -..-|.
T Consensus 693 aielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~ 769 (1636)
T KOG3616|consen 693 AIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYG 769 (1636)
T ss_pred HHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccch
Confidence 33222111 0000 001 01112234455567788888888888766432 344577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+...|+..|+++.|.++|.+.- .++-.+.+|.+.|+|+.|.++-.+... .......|..-..-+-+.|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhc
Confidence 78888999999999988885532 355677889999999998888766543 2334445555555566677
Q ss_pred CHHHHHHHHHH
Q 016027 299 KLDLAIQVSKE 309 (396)
Q Consensus 299 ~~~~a~~~~~~ 309 (396)
++.+|.++|-.
T Consensus 839 kf~eaeqlyit 849 (1636)
T KOG3616|consen 839 KFAEAEQLYIT 849 (1636)
T ss_pred chhhhhheeEE
Confidence 77776665533
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=74.77 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=109.7
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 27 VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 27 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
.|+.++......++..+...++++.|+.+|+++.+.. +.+...++..+...++-.+|.+++++.....|.
T Consensus 163 ~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-- 232 (395)
T PF09295_consen 163 VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-- 232 (395)
T ss_pred CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--
Confidence 3555556667788888888999999999999988862 235667888888889999999999999875443
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
+......-...+.+.++++.|+.+.+++.+..+ -+..+|..|..+|...|+++.|+-.++.+.
T Consensus 233 -d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 -DSELLNLQAEFLLSKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 677788888889999999999999999988742 256699999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-06 Score=71.03 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=107.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+......|+..+...++++.|..+|+++.+.+ |+ ....++..+...++-.+|.+++.+.++... -+...+...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Q 240 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQ 240 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 44555667777778899999999999998863 33 455688888889999999999999997643 377788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.+.+.+.++++.|+++.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999883 5566799999999999999999999998774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-06 Score=60.36 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
.+.++.++..+.+.|++++|..+|+.+...+ |.+..-|..|+.++...|++++|+..|..+...+++ +...+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---dp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID---APQAP 106 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHH
Confidence 5577788888888999999999999888876 777888888888888899999999999988887654 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..++...|+.+.|.+.|+..+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888999999999888877765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0003 Score=60.56 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHH
Q 016027 195 FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP-SPTTYNYFFRYFSKFGKVEDAMNLYR 273 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (396)
.+.....+++++......-..+|..+++...+..-.+.|..+|.++.+.+..+ +..+.++++..+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566667766654333345678889999999999999999999999987666 6777888888776 578899999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 274 KMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID--LDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.-++.- .-++.-....+..+...++-..+..+|+++...+..++ ...|..++.--..-|++..+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 866652 22444556677888899999999999999998855444 47899999999999999999999888765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-06 Score=58.99 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PNVVTYGTL 150 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 150 (396)
.++..++..+.+.|++++|.+.|..+....|+.......+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356667777777788888888887777654443333455666777777778888888887777664222 123456666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 67777777777777777777766
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00011 Score=60.93 Aligned_cols=269 Identities=12% Similarity=0.026 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
........+....++.+|+..+..+++.. |.+...|..-+..+...|++++|.--.+...+..++.. ..+..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-----pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~---k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-----PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS---KGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-----ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc---ccccc
Confidence 34456667778889999999999999985 77788888888889999999999888877766655532 12333
Q ss_pred HHHHHHhcCChhHHHHHHH---------------HHHhCC-CCCChhHHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 115 LLNGWFRSKNVKDAERFWL---------------EMRKEN-VTPNVVTYGTL-VEGYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
.-.++...++..+|.+.++ ...... -+|...++..+ ..++.-.|+.++|.+.--..++.. ..
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~ 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-AT 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cc
Confidence 3333333333333333332 111111 11333344433 345566788999888877777664 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-h----------hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT-M----------VTYTSLVKGYCKAGDLEGASKILKMMISRG-- 244 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 244 (396)
+......-..++.-.++.+.+...|++.+..++.-. . ..+..-.+-..+.|++..|.+.+.+.+..+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 333333333455667889999999999887654311 1 112222344567899999999999998753
Q ss_pred -CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 245 -FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 245 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
..|+...|........+.|+..+|+.--....+.+.. -...+..-..++...++|++|.+-++...+.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777777888999999999988887764311 1234444455677789999999999988765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00066 Score=62.11 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=76.7
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
...+++.+|++...+.++. .|+. ..+-..-+-.+.+.|+.++|..+++...... +.|..+...+-.+|...
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCchHHHHHHHHHHHHH
Confidence 3567888888888888875 5652 2233333445678888888888887766653 55777888888888888
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKD 127 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (396)
|+.++|..+|+++.... |+......+..+|.+.+++.+
T Consensus 91 ~~~d~~~~~Ye~~~~~~----P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKY----PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hhhhHHHHHHHHHHhhC----CcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887663 445555666666777665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=63.41 Aligned_cols=90 Identities=16% Similarity=-0.044 Sum_probs=80.5
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|..+|+-.... .|. +...|..|+-++-..|++++|+..|..+...+ |.++..+..++.++.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-----~ddp~~~~~ag~c~L 114 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-----IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHH
Confidence 456789999999999888763 555 46799999999999999999999999999986 889999999999999
Q ss_pred HcCChHHHHHHHHHHhhcc
Q 016027 84 KQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (396)
..|+.+.|.+.|+.+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-07 Score=61.46 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=53.5
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
+|+++.|+..++++++..+. +. +...+..++.++.+.|++++|+.++++ .+.+ +.+......++.++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCC-Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCHHHHHHHHHHHHHhCC
Confidence 57778888888777774321 11 144566678888888888888888877 3332 3444556666777888888
Q ss_pred hHHHHHHHHH
Q 016027 88 VKAASEYFHK 97 (396)
Q Consensus 88 ~~~A~~~~~~ 97 (396)
+++|+++|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888877765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.8e-06 Score=59.91 Aligned_cols=131 Identities=13% Similarity=-0.045 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.|..++..+ ..++...+...++.+....+ +.+........+...+...|++++|...|+.+....++..........
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~--~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYP--SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 455555554 58899999888998888641 112224556667888999999999999999998863221111234556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
+...+...|++++|+..++..... ......+......+.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999774332 234556778889999999999999999864
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00017 Score=57.98 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
...+...+..+.+.|++++|++.|+.+....+. .+.-..+...++.++.+.+++++|...+++..+..|+.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 445666666677777777777777777765311 111122234566777777777777777777777666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-06 Score=72.49 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=60.8
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|+..|.++++. .|+ +...|..++.++...|++++|+..++++.... |.+..+|..++.+|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPN--NAELYADRAQANIKLGNFTEAVADANKAIELD-----PSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHH
Confidence 345567777777777777764 343 25566677777777777777777777776664 556666777777777
Q ss_pred HcCChHHHHHHHHHHhhccC
Q 016027 84 KQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (396)
..|++++|+..|+++...+|
T Consensus 82 ~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCC
Confidence 77777777777777766543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-06 Score=57.38 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++..++..+...|++++|+..++++.+.. |.+..++..++..+...|++++|.+.++......+. +..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH
Confidence 46677778888888888888888887753 555567777888888888888888888887765332 4456777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+...+...|++++|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 777777888888888887776653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-06 Score=69.88 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
+...+..+...|++++|++.|++++... |.+..++..++.+|...|++++|+..++++...+|. +...|..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~~~l 76 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAYLRK 76 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHH
Confidence 4556778889999999999999999985 788899999999999999999999999999988654 67789999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..++...|++++|+..|++.++..
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=63.29 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=79.8
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC---Ch
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG---RV 88 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 88 (396)
+....-++..+.. +|+ +...|..|+.+|..+|+++.|...|.++.+.. |+++..+..+..++..+. ..
T Consensus 139 ~~l~a~Le~~L~~--nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 139 EALIARLETHLQQ--NPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHh--CCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCccc
Confidence 3333444555543 344 46678888888888888888888888877775 777777777777766543 34
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 89 KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.++..+|+++...++. |+.+...|...+...|++.+|...|+.|...
T Consensus 210 a~a~~ll~~al~~D~~---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 210 AKARALLRQALALDPA---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5677777777776654 6777777777777788888888888877776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-06 Score=54.26 Aligned_cols=65 Identities=32% Similarity=0.286 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhcc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELD 102 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~ 102 (396)
..+|..++..+...|++++|+..|+++.+.+ |.++.++..++.++...| ++++|++.++++.+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 5689999999999999999999999999986 888899999999999999 7999999999988764
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.9e-06 Score=65.07 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+..-+.-+.+.+++++|++.|.+++... |.++..|..-..+|.+.|.++.|++-.+.+...+|. ...+|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---yskay~ 153 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELD-----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---YSKAYG 153 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---HHHHHH
Confidence 355566777788888888888888888875 778888888888888888888888888888877554 566788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH-HccCCHH---HHHHHHHHHHHcCCCCCH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY-CRLRRVD---RAIRLVKEMRKEGIEPNA 179 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~ 179 (396)
.|..+|...|++++|++.|++.++. .|+..+|-.=+... .+.+... .+...++.....|..|+.
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 8888888888888888888887764 56666665444332 2233332 344444444444543544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=60.89 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=75.6
Q ss_pred cCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh
Q 016027 9 KEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV 88 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (396)
.++..+...+..+++...... ....|..++..+...|++++|+..|+++..... +.+..+.++..++.++...|++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI--DPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHHHcCCH
Confidence 345666666666654332222 245778888888888888888888888876531 1112345788888888888888
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHHHHH-------hcCChhHHHHHH
Q 016027 89 KAASEYFHKRKELDQSWAPTVRVYNILLNGWF-------RSKNVKDAERFW 132 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~ 132 (396)
++|+..++++...++. ....+..+...+. ..|+++.|+..+
T Consensus 89 ~eA~~~~~~Al~~~~~---~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 89 TKALEYYFQALERNPF---LPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 8888888888776433 3455666666665 455555444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=58.51 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|...|+++....+........+..+...+.+.|++++|...+++....... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 3344555555555555555555555554432221111234555555555555555555555555543211 333444444
Q ss_pred HHHHccCCH
Q 016027 152 EGYCRLRRV 160 (396)
Q Consensus 152 ~~~~~~~~~ 160 (396)
.++...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-05 Score=58.48 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
....+..++..+...|++++|+..|+++...... .+.....+..++.++.+.|++++|...++++....|. +...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED--PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHH
Confidence 4567889999999999999999999999876321 1123568899999999999999999999999987544 5677
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWL 133 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~ 133 (396)
+..+...+...|+...+..-++
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHH
Confidence 7788888888887655554433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=63.39 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=90.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
.=+.-..+.+++++|+..|..+++.+|. |...|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|..
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHc
Confidence 3456677899999999999999998765 8889999999999999999999999988876422 56799999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 157 LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
.|++++|++.|++.++. .|+..+|..=+...
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESYKSNLKIA 192 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHH
Confidence 99999999999999876 67777776655544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-06 Score=55.90 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV 125 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (396)
+|++++|+.+++++....+. .++...+..++.+|.+.|++++|..+++. ...++. +......+..++.+.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCCH
Confidence 57778888888888776411 01455566678888888888888888877 333211 334445567777888888
Q ss_pred hHHHHHHHH
Q 016027 126 KDAERFWLE 134 (396)
Q Consensus 126 ~~a~~~~~~ 134 (396)
++|+++|++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888877765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=60.71 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
.|...+..|...|++++|.+.|.++.......+.+ .-...|...+.+|.+. ++++|.+.++++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 45556666666777777777666665432111101 1111222222222222 444444433333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL-RRVDRAIRLVKEMRKE----GIEP--NAIVYNTVI 186 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~ 186 (396)
+..|...|++..|-+++ ..+...|... |++++|++.|++..+. | .+ -...+..+.
T Consensus 101 --~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 101 --IEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp --HHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred --HHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 23344444444444333 3344455555 6777777777766542 2 11 123455666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-----ch-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--hhhHHHHH
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCEPGP-----TM-VTYTSLVKGYCKAGDLEGASKILKMMISRG--FLPS--PTTYNYFF 256 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~ 256 (396)
..+.+.|++++|.++|+++....... +. ..|...+-++...||+..|...++...... +..+ ......|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 77777888888888887776542221 11 122333445666778888888887776542 1111 23445556
Q ss_pred HHHhc--cCCHHHHHHHHHHHH
Q 016027 257 RYFSK--FGKVEDAMNLYRKMI 276 (396)
Q Consensus 257 ~~~~~--~~~~~~a~~~~~~~~ 276 (396)
.++-. ...+..++.-|+.+.
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHhCCHHHHHHHHHHHcccC
Confidence 66532 233455555554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00039 Score=55.84 Aligned_cols=179 Identities=13% Similarity=0.170 Sum_probs=95.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc-
Q 016027 185 VIDGLVEAGRFEEVSGMMERFLVCEPGPTMV--TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK- 261 (396)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 261 (396)
....+...|++++|.+.|+.+....+..... ..-.++.++.+.+++++|...+++..+..+......+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3334455666666666666666543332111 1123445566666666666666666655332222222222222211
Q ss_pred -c---------------CC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 262 -F---------------GK---VEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 262 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
. .+ ...|+..|+.+++. -|+ +.-..+|...+..+... -...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 12344444444443 222 22234444433333321 01111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRR--GLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
-.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 24566788889999999999998873 3334456677888899999999999888776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.001 Score=59.24 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+....+.|++-...++++.-.... +-..-..++..++..+.....|++|.++|..... ....+.++
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~---dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----------~e~~~ecl 832 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDD---DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----------TENQIECL 832 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHhHHHHH
Confidence 344455555555555444211110 0011234556666666666666666666654321 12344555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVS 199 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 199 (396)
.+..++++-+.+-..+ +-+....-.+..++...|.-++|.+.+-+ .+ .|. ..+..|...++|.+|.
T Consensus 833 y~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s-~pk-----aAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RS-LPK-----AAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---cc-CcH-----HHHHHHHHHHHHHHHH
Confidence 5555555554444333 23555666677777777777777666532 22 221 3345566667777777
Q ss_pred HHHHHH
Q 016027 200 GMMERF 205 (396)
Q Consensus 200 ~~~~~~ 205 (396)
++-++.
T Consensus 899 elaq~~ 904 (1189)
T KOG2041|consen 899 ELAQRF 904 (1189)
T ss_pred HHHHhc
Confidence 665554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.2e-06 Score=51.47 Aligned_cols=61 Identities=31% Similarity=0.385 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
.++..+.+.|++++|+..|+++.+.. |.++.++..++.++...|++++|..+|+++.+.+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-----PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46777888899999999999888874 77888888888888889999999988888877654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-05 Score=66.68 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=60.5
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016027 248 SPTTYNYFFRYFSKFGKVEDAMNLYRKMIES--GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTML 325 (396)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 325 (396)
+......++..+....+.+.+..++.+.+.. ....-+.|..++++.|...|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444455555555555555555555555443 11122334445555555555555555555555555555555555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 326 IHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 326 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
++.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555555555444444444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.2e-05 Score=52.19 Aligned_cols=101 Identities=17% Similarity=0.059 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++..++.++-..|+.++|+.+|+++...+... +.....+..+...+...|++++|..+++......|+..-+......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG--ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 45566667777777777777777777653211 2223456667777777777777777777766543322222233333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
+..++...|+.++|++.+-....
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666777777776655443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0011 Score=55.28 Aligned_cols=264 Identities=14% Similarity=0.043 Sum_probs=173.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+..+|..|+..+..+++. -|+ +...|..-+..+...|++++|.--.+...+.. +..+..+.....++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~--~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-----d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM--CPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK-----DGFSKGQLREGQCH 127 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh--Ccc--chhhhchhHHHHHHHHhHhhcccchhhheecC-----CCccccccchhhhh
Confidence 3466778899999999999985 455 35577788888889999999887777666654 33333444455555
Q ss_pred HHcCChHHHHHHHHHHh------------hccCC--CCCChHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 83 CKQGRVKAASEYFHKRK------------ELDQS--WAPTVRVYNIL-LNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~------------~~~~~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
...++..+|.+.++... ..-+. -+|.-..|..+ ..++.-.+++++|..+--..++.... +....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHH
Confidence 55555555554444211 11111 12333444433 24566689999999887777765322 33333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV-------------YNTVIDGLVEAGRFEEVSGMMERFLVCEP---G 211 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~ 211 (396)
..-..++.-.++.+.+...|++.+..+ |+... +..-.+-..+.|.+..|.+.|.+.+...+ .
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 333344556678899999998887763 33322 12223345678999999999999988654 3
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 212 PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
++...|.....+..+.|+.++|+.--+...+.+.. -...+..-..++.-.++|++|.+-|+...+..
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55667777788888999999999998888875311 12234444456677889999999999987763
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-05 Score=58.84 Aligned_cols=84 Identities=8% Similarity=-0.088 Sum_probs=57.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
....+..++..+...|++++|+..|+++....++......++..+...+...|++++|+..++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355567777888888888888888888876543322234577788888888888888888888877653 2234455555
Q ss_pred HHHHH
Q 016027 151 VEGYC 155 (396)
Q Consensus 151 ~~~~~ 155 (396)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-05 Score=53.86 Aligned_cols=109 Identities=17% Similarity=0.039 Sum_probs=81.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.++-..|+.++|+.+|++.+..+.... ....++..++..+...|++++|+.+|+......+. -+.+..+...+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~--~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD--DELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHH
Confidence 456678999999999999999765433 12568889999999999999999999999875311 122555566667788
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
...|+.++|++++-..... +...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la~------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE------TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 8999999999999776542 4445555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-05 Score=52.58 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 016027 288 HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKR 367 (396)
Q Consensus 288 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 367 (396)
..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34455555566666666666666554322 33555556666666666666666666665543 22334555666666666
Q ss_pred CCchHHHHHHHHHhc
Q 016027 368 GMTALAQKLCNVMSS 382 (396)
Q Consensus 368 g~~~~A~~~~~~~~~ 382 (396)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666666544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0013 Score=51.53 Aligned_cols=180 Identities=16% Similarity=0.110 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++.+|+..|+.+...-+ +.+-.+.+...++.++.+.|+++.|...++......|..+--..++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P--~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP--NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 55788888899999999999999999988643 3355567778889999999999999999999888766643322333
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 016027 113 NILLNGWFRS-----------KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 113 ~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
-.++.++... +...+|...|+ .++.-|=...-..+|...+..+.+. =...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 3333322221 01122333333 3333333333444444444433322 0111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHH
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 233 (396)
--.+...|.+.|.+..|..-++.+++.-+.. .......++.+|.+.|..+.+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1234455667777777777777766653321 123445556666666665533
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-06 Score=45.28 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-06 Score=45.04 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH 353 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 353 (396)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.4e-05 Score=65.42 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKE--NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555566666665555543 11112234446666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
+..+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666655554444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-06 Score=44.48 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (396)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=60.12 Aligned_cols=130 Identities=11% Similarity=0.087 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH-cCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK-QGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
+|..+++...+.+..+.|..+|.++.+.. +.+..+|...+..-.. .++.+.|.++|+...+.- ..+...|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f---~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF---PSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH---TT-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---CCCHHHHH
Confidence 57777788888888888888888887542 3455666666666344 456666888888877643 34677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNV---VTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..+..+.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888887765 22222 36777777777777777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00022 Score=59.13 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc----CC-CCchhhHHHHHHHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-GRFEEVSGMMERFLVC----EP-GPTMVTYTSLVKGY 224 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~ 224 (396)
+..|...|++..|-+.+.. +...|... |++++|++.|++..+. +. ..-...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 3445556666655554444 34445556 7888888888877653 11 01134556677788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC--hhhHHHHHHHH
Q 016027 225 CKAGDLEGASKILKMMISRGFLPS-----PT-TYNYFFRYFSKFGKVEDAMNLYRKMIESGY--TPD--RLTYHILLKIL 294 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~~~ 294 (396)
.+.|++++|.++|+++.......+ .. .+...+-++...|++..|...+++.....+ ..+ ......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 888888888888888876532211 11 222233355566788888888887765432 111 23344555554
Q ss_pred Hh--cCCHHHHHHHHHHHH
Q 016027 295 CK--EDKLDLAIQVSKEMK 311 (396)
Q Consensus 295 ~~--~~~~~~a~~~~~~~~ 311 (396)
-. ...+..++.-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 43 123444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-06 Score=43.83 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 016027 320 DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP 352 (396)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 352 (396)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.6e-06 Score=51.28 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=27.5
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+.|++++|+..|.+++.. .|+ +..++..++.++.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555543 333 2445555555555555555555555555554
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.7e-06 Score=50.69 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=50.7
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
...+.+.|++++|+..|+++++. .|+ +..++..++.++...|++++|+..|+++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPD--NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35688999999999999999996 455 47899999999999999999999999998874
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.6e-05 Score=49.58 Aligned_cols=79 Identities=14% Similarity=0.383 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENV-TPNVVTYGTLVEGYCRLR--------RVDRAIRLVKEMRKEGIEPNAIVYN 183 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (396)
...+..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 788888888888776553 2345677788888888888888888
Q ss_pred HHHHHHHH
Q 016027 184 TVIDGLVE 191 (396)
Q Consensus 184 ~l~~~~~~ 191 (396)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=49.70 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=43.6
Q ss_pred HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 44 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
...|++++|++.|+++.... |.+..+...++.+|.+.|++++|.++++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56788888888888888874 7788888888888888888888888888887763
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0004 Score=62.19 Aligned_cols=135 Identities=6% Similarity=-0.073 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHHcC-----ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 016027 69 DSGASLFEILLDSLCKQG-----RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK--------NVKDAERFWLEM 135 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 135 (396)
|.+..+|...+++..... +...|..+|+++.+.+|+ ....|..+..++.... +...+.+...+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 666677777666644322 256777778887777655 3444544433332211 112222222222
Q ss_pred HhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 136 RKE-NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 136 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
... ....+...+..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|...+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 221 112233444444444444555555555555555542 34455555555555555555555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=63.25 Aligned_cols=272 Identities=12% Similarity=0.043 Sum_probs=168.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CCC-CCChHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD--QSW-APTVRVYNILL 116 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~~~~l~ 116 (396)
+.-+++.|+....+.+|+.+.+.+.. ++..-..+|..|+.+|.-.+++++|+++...=.... -+. .-...+-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45688999999999999999987532 233445678888889999999999998765321110 010 01223344455
Q ss_pred HHHHhcCChhHHHHHHHHH----HhCCCC-CChhHHHHHHHHHHccCC--------------------HHHHHHHHHHHH
Q 016027 117 NGWFRSKNVKDAERFWLEM----RKENVT-PNVVTYGTLVEGYCRLRR--------------------VDRAIRLVKEMR 171 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 171 (396)
..+--.|.|++|+....+- .+.|-+ ....++..+...|...|+ ++.|.++|.+=+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 6666678888877654332 222211 134456667777766553 234444444322
Q ss_pred Hc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCC-CchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 172 KE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV----CEPG-PTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 172 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+. |- -..-..|..+.+.|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 21 10 01123456666677778899999877654332 1211 234577888899999999999999887654
Q ss_pred HC----CC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHH----C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 242 SR----GF-LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE----S-GYTPDRLTYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 242 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
.. |- .........|...|.-...+++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+..+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 21 12334556677777777888899888765332 1 112245677788899999999999888776654
Q ss_pred H
Q 016027 312 C 312 (396)
Q Consensus 312 ~ 312 (396)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00047 Score=61.80 Aligned_cols=135 Identities=11% Similarity=-0.059 Sum_probs=101.1
Q ss_pred ChhHHHHHHHHHHH--cC---CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC--------ChHHHHHHHHHH
Q 016027 32 SKDTFVILIRRYAR--AG---MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG--------RVKAASEYFHKR 98 (396)
Q Consensus 32 ~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~ 98 (396)
+..+|...+++... .+ ...+|+++|+++.+.+ |....++..+..++.... ++..+.+...+.
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-----P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-----PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 36678877776444 33 3779999999999986 777777777666654432 233445555554
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
... +....+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|...+++....+
T Consensus 411 ~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 432 1223355778888777778899999999999999875 688899999999999999999999999998773
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0024 Score=50.08 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-----HH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYN-----TV 185 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 185 (396)
+.+.++.++.-.+.+.-....+.+.++...+.++.....|++.-...|+.+.|..++++..+..-..+..+++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666677777777777777776655666677777777777777777777777665432222222222 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
...+.-.+++..|...+.++...+.. ++...|.-.-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23344455666666666666654432 4444444444444456677777777777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0012 Score=51.72 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+..+...+..+...|++.+|.+.|+.+....|+.+-.......++.++.+.|+++.|...++.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777778888888888888888776665445566677788888888888888888887765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00014 Score=58.84 Aligned_cols=103 Identities=11% Similarity=-0.082 Sum_probs=71.9
Q ss_pred hHHHHHHHH-HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 34 DTFVILIRR-YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 34 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..+.. ..+.|++++|+..|+.+.+..+. .+-.+.++..++..|...|++++|...|+.+....|+.+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 334444443 35678888888888888876311 111245777888888888888888888888877666655556666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..++.++...|+.++|..+|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777888888888888887765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.3e-05 Score=61.27 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=79.0
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
.+.|++++|...|..+++..+.. .....++..++..|...|++++|+..|+.+.+..+ +.+..+.++..++.++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--KSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCcchhHHHHHHHHHHHHc
Confidence 56799999999999999864322 12246899999999999999999999999987642 3355677888889999999
Q ss_pred CChHHHHHHHHHHhhccCC
Q 016027 86 GRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~ 104 (396)
|+.++|.++|+.+.+..|+
T Consensus 231 g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 9999999999999886443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=60.05 Aligned_cols=131 Identities=9% Similarity=0.076 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY-FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777788888887777543 2244445444444 23345666678888777765 34466667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 294 LCKEDKLDLAIQVSKEMKCRGCDID---LDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
+...|+.+.|+.+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777778888888777754 2211 246777777777777777777777777663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=62.98 Aligned_cols=273 Identities=15% Similarity=0.063 Sum_probs=171.3
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV-KNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 82 (396)
-+++.|+...-+..|+.+++.+...-..-..+|..|+.+|.-.+++++|+++...=+..... .+-......-..|+..+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 36789999999999999998654211111246667788888888999998875532221110 01112223344577777
Q ss_pred HHcCChHHHHHHHHH----HhhccCCCCCChHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHh-
Q 016027 83 CKQGRVKAASEYFHK----RKELDQSWAPTVRVYNILLNGWFRSKN--------------------VKDAERFWLEMRK- 137 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 137 (396)
.-.|.+++|+....+ +.+++..+ .....+..+...|...|+ ++.|.+.|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 778888888765443 22221111 123445567777765543 3445555543221
Q ss_pred ---CCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 138 ---ENVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMR----KEGI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 138 ---~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.|-. .--.+|..|.+.|.-.|+++.|+...+.-+ +.|- ......+..+.+++.-.|+++.|.+.|+.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1211 123456777777788899999987665432 2231 123456778889999999999999998875432
Q ss_pred ----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 209 ----EP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISR-----GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 209 ----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
|- .....+...|.++|.-..+++.|+.++..-... +..-....+..|..++...|.-++|+.+...-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 234456667888998888999999887654321 1122466888899999999999999887766544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=47.97 Aligned_cols=76 Identities=11% Similarity=0.209 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGC-DIDLDTSTMLIHLLCRMY--------KFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
+..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. +.-+.+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666666555432 3445667778888777888888888877
Q ss_pred HHHHH
Q 016027 362 DEFKK 366 (396)
Q Consensus 362 ~~~~~ 366 (396)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=48.38 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK-NVKDAERFWLEMRKE 138 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 138 (396)
++.+|..++..+...|++++|+..|+++.+.+|. +...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567778888888888888888888888877654 6677888888888888 688888888877653
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0033 Score=53.11 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH---cCChHHHHHHHHHHhhccC
Q 016027 27 VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK---QGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 27 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 103 (396)
.|...+.++...++-+|....+++.-+++.+.+....... +...+.+-...+-++.+ .|+.++|++++..+...
T Consensus 135 ~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-- 211 (374)
T PF13281_consen 135 DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-- 211 (374)
T ss_pred CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--
Confidence 3444455566666666777777777776666666642211 23344444455555555 66666777666664333
Q ss_pred CCCCChHHHHHHHHHH
Q 016027 104 SWAPTVRVYNILLNGW 119 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~ 119 (396)
...++..+|..+...|
T Consensus 212 ~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIY 227 (374)
T ss_pred cCCCChHHHHHHHHHH
Confidence 2234555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0083 Score=51.01 Aligned_cols=370 Identities=12% Similarity=0.077 Sum_probs=191.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCC-CCCCCChhHHH-HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFV-ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
.+.+++++.+|..+|.++.++.. .|..+..+.+. .++++|. .++.+.-...+....+.. |..+..-....-.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~-----~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF-----GKSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc-----CCchHHHHHHHHH
Confidence 35678999999999999887543 22222222222 4445543 445665555555555542 3222222222333
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCC------------ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChh
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAP------------TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN----VTPNVV 145 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 145 (396)
..+.+.+.+|.+.+......-.+..| |...=+..++++...|++.++..+++++...= ..-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 45788999999988876654222221 22223556788899999999999998887642 335777
Q ss_pred HHHHHHHHHHccC---------------CHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHH-------------
Q 016027 146 TYGTLVEGYCRLR---------------RVDRAIRLVKEMRKEG------IEPNAIVYNTVIDGLVE------------- 191 (396)
Q Consensus 146 ~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~------------- 191 (396)
+|+.++-.+.++= -++.+.-+.+++.... +.|....+..++....-
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8877544443321 1222333333332211 12222222222211110
Q ss_pred -----------------------cCCHHHHHHHHHHHHhcCCC----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 192 -----------------------AGRFEEVSGMMERFLVCEPG----PTMVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 192 -----------------------~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
..+.+++..+-+.+.....+ .-..+|..++....+.++...|.+.+.-+....
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 01233333333322221111 123456666777777777777777766665432
Q ss_pred CCC-------------------ChhhHHHH------------------------H---HHHhccCC-HHHHHHHHHHHHH
Q 016027 245 FLP-------------------SPTTYNYF------------------------F---RYFSKFGK-VEDAMNLYRKMIE 277 (396)
Q Consensus 245 ~~~-------------------~~~~~~~l------------------------~---~~~~~~~~-~~~a~~~~~~~~~ 277 (396)
+.. |...++.+ + .-+-+.|. -++|+.+++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 111 00011100 0 00112233 5566666666655
Q ss_pred CCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHH--HHhcCChhHHHHHHHH
Q 016027 278 SGYTPDRLTYHILL----KILCK---EDKLDLAIQVSKEMKCRGCDIDL----DTSTMLIHL--LCRMYKFDEASAEFED 344 (396)
Q Consensus 278 ~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~~~~~~a~~~~~~ 344 (396)
-. +-|...-+.+. .+|.. ...+.+-..+-+-+.+.|+.|-. ..-|.|.++ +...|++.++.-.-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 32 11322222221 12221 22334444444444555665433 333444433 4567888887655444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 345 MIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 345 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+.+ +.|++.+|+.+.-++....++++|..++.+++-
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 443 678999999999999999999999999988765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00096 Score=53.57 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC---CHHHHHHH
Q 016027 90 AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR---RVDRAIRL 166 (396)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 166 (396)
....-++.-...+|+ |...|-.|...|...|++..|..-|.+..+.. .++...+..+..++.... ...++..+
T Consensus 140 ~l~a~Le~~L~~nP~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 140 ALIARLETHLQQNPG---DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 333334444444554 77777777777777777777777777777653 235556666655554432 34567777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 016027 167 VKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (396)
+++++..+ +.+......+...+...|++.+|...|+.|++..+
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 77777764 44556666666777777777777777777777543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=56.95 Aligned_cols=101 Identities=15% Similarity=-0.028 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
.+..+-.+...|++..|.+.|....+.-+.. +-.+.++.-|+.++...|++++|..+|..+.+..|..+.-...+..|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3334444455566666666666655544322 33344455566666666666666666666655555444445555566
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=49.24 Aligned_cols=283 Identities=16% Similarity=0.063 Sum_probs=178.0
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHH--HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchh-HHHHHHHHHHH
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVIL--IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGAS-LFEILLDSLCK 84 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 84 (396)
.|+-..|.++-.+.-+. ...+ ...+..+ .+.-.-.|+++.|.+-|+.|... |.... -...|.-.-.+
T Consensus 97 AGda~lARkmt~~~~~l-lssD---qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d------PEtRllGLRgLyleAqr 166 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSD---QEPLIHLLEAQAALLEGDYEDARKKFEAMLDD------PETRLLGLRGLYLEAQR 166 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhcc---chHHHHHHHHHHHHhcCchHHHHHHHHHHhcC------hHHHHHhHHHHHHHHHh
Confidence 56777777766554321 1222 2234433 44566689999999999999874 22111 12223333446
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChh--HHHHHHHHHH---ccC
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPNVV--TYGTLVEGYC---RLR 158 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~ 158 (396)
.|..+.|..+-+.+...-|. -...+...+...+..|+|+.|+++.+.-++.. +.++.. .-..|+.+-. -..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~---l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQ---LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred cccHHHHHHHHHHHHhhccC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 79999999988888765433 45678889999999999999999998766542 334432 1222332211 123
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIV-YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
+...|...-.+..+. .|+..- -..-..++.+.|+..++-.+++.+-+..+.|++. .+-.+.+.|+ .+..-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHH
Confidence 555666655555544 444332 2234577889999999999999998876665532 2223445554 344444
Q ss_pred HHHHHC-CCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 016027 238 KMMISR-GFL-PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK-EDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 238 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 313 (396)
+...+. .++ .+......+..+....|++..|..--+..... .|....|..|...-.. .|+-.++...+.+..+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333321 122 25566777778888889998887766665553 6777888877776544 59999999999988764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00028 Score=58.81 Aligned_cols=127 Identities=17% Similarity=0.089 Sum_probs=77.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVS-----------KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG 71 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 71 (396)
+.|.+.|+|..|...|.+++..-..-..++ ...+..++-++.+.+++..|++.-++++..+ |.|
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-----~~N 290 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-----PNN 290 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-----CCc
Confidence 467889999999998888765322111000 2245566666667777777777777766665 666
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh-HHHHHHHHHHh
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK-DAERFWLEMRK 137 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 137 (396)
......-+.++...|+++.|+..|+++.+..|. |-.+-+.++.+..+..+.. ...++|..|..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666677777777777777777777666544 4444555555444444333 33555665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.006 Score=45.27 Aligned_cols=132 Identities=12% Similarity=0.066 Sum_probs=75.7
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CChhhHHHH
Q 016027 212 PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-PDRLTYHIL 290 (396)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 290 (396)
|+......|..+....|++.+|...|.+...--...|....-.+.++....+++..|...++++.+.+.. -++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4555555566666666666666666666665444455556666666666666666666666666654310 012233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
.+.+...|+...|+..|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 56666667766677766666654 334444444445556666655555444333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.015 Score=49.50 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=86.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESG-YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL 329 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (396)
+|...+....+....+.|..+|-++.+.+ ..++...+++++..++ .|+...|..+|+.-...- +.++..-+..+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 34455555566667778888888887776 4566777777776554 467777888887765542 22333335566667
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 330 CRMYKFDEASAEFEDMIRRGLVPH--YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 330 ~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
...++-+.|..+|+..+.+ +..+ ...|..++.--..-|+...+..+=++|...-++
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 7778888888888865542 1222 356777777777778887777666666554333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00098 Score=48.65 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
...+..+.-+.+.|++++|..+|..+...+ +.++..+..|+.++...+++++|+..|..+...+.. |...+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f 109 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYD-----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVF 109 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccc
Confidence 355566777778888888888888888765 667777888888888888888888888887766433 444566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
....++...|+.+.|...|......
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 6778888888888888888887763
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.9e-05 Score=39.69 Aligned_cols=29 Identities=41% Similarity=0.653 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 321 TSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 321 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=3e-05 Score=39.61 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00052 Score=52.32 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC----------------CHHHHH
Q 016027 106 APTVRVYNILLNGWFR-----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR----------------RVDRAI 164 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 164 (396)
..+..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467777777777765 4677778888888888899989999999988875422 223445
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
+++++|...|+-||..++..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555544433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0028 Score=45.20 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
+...+..-+....+.|++++|++.|+.+...-+.+ +-...+...|+.+|.+.+++++|...+++.++++|..+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 36778888888999999999999999998875433 44566778899999999999999999999999987743
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=46.14 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=42.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
...|.+.+++++|+++++.+.... |.++..+...+.++...|++++|.+.|+.+.+..|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-----PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 345677777777777777777764 66777777777777777777777777777776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00028 Score=44.83 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=52.3
Q ss_pred ChhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 1 MIKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 1 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
|-..|.+.++++.|+..++.++.. .|+ +...|...+.++...|++++|.+.|+++.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--DPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--Ccc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456789999999999999999985 455 46799999999999999999999999999874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0023 Score=54.85 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch---hHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA---SLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+..+|+.++.+|...|++++|+..|++++..+ |.+. .+|++++.+|...|++++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998875 5555 34888999999999999999999998875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=46.14 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-CCC-chhHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDS-GASLFEILLDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
..++..++.+|...|++++|++.|+++.+.....+ ..+ ...++..++.++...|++++|+++++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45788889999999999999999998887622111 111 255678888888888888888888888764
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0024 Score=48.87 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 016027 230 LEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK 264 (396)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (396)
-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 34566666666666666666666666666654443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.019 Score=45.29 Aligned_cols=132 Identities=12% Similarity=0.061 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH-----
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL----- 290 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 290 (396)
+.+.++.++.-.+.+.-....+.+.++...+-++.....+++.-...|+.+.|..+|++..+..-..+..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566666666777777777777777665667777777777777778887777777766654323333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
...|.-.+++..|...+.++...+.. ++...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445566777777777777766443 5555555555555667888888888888765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.014 Score=43.40 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=88.7
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EPNAIVYNT 184 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 184 (396)
.|++..-..|...+.+.|++.+|...|.+...--..-|......+.++....+++..|...++.+-+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4566666777888888888888888888877654555777777788888888888888888888776531 112334556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 185 VIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 185 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
+.+.+...|.+.+|...|+.....-+ +..........+.+.|+.+++..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66778888888888888888877543 333333334455566655555443333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.029 Score=47.55 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhh
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE---PGPTMVTYTSLVKGYCK---AGDLEGASKILKMMISRGFLPSPTT 251 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 251 (396)
+..+...++-+|....+|+..+++.+.+.... ......+-...+.++.+ .|+.++|.+++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34455566677999999999999999987641 11123333455566777 8999999999999766666788999
Q ss_pred HHHHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----HHHHHHHH---HH-HHHcC
Q 016027 252 YNYFFRYFSK---------FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK----LDLAIQVS---KE-MKCRG 314 (396)
Q Consensus 252 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~ 314 (396)
+..+.+.|-. ....++|...|++.-+.. |+..+--.++..+...|. -.+..++- .. +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999887632 224677888888766653 444332222223333332 22333333 11 11222
Q ss_pred C---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 315 C---DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 315 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
. ..+.-.+.+++.+..-.|+.++|.+..++|.+..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 2344555778888888899999999999988753
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0048 Score=45.45 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIVY 182 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 182 (396)
+...++..+...|++++|..+.+.+.... +.+...|..+|.++...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44555566666677777777777666653 23666666777777777777777776666543 3666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0038 Score=45.68 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=62.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|++++|..+|+-+.-.++. +..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 45678888888888777665533 5555666777777778888888888777665543 556666677777888888888
Q ss_pred HHHHHHHHH
Q 016027 339 SAEFEDMIR 347 (396)
Q Consensus 339 ~~~~~~~~~ 347 (396)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.05 Score=49.15 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+|..++..+.....|++|.+.|...... ...+.++.+..++++-..+-+.+.+ +....
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------------e~~~ecly~le~f~~LE~la~~Lpe-------~s~ll 855 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------------ENQIECLYRLELFGELEVLARTLPE-------DSELL 855 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch-------------HhHHHHHHHHHhhhhHHHHHHhcCc-------ccchH
Confidence 457777888888888888888887765442 2466677776777665555544433 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
-.+..++...|.-++|.+.|-+ .+.+ ...+..|...++|.+|.++-++.
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888899999999999887743 2222 23456778888888888876654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.033 Score=46.63 Aligned_cols=298 Identities=13% Similarity=0.086 Sum_probs=195.7
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCChhH--H
Q 016027 74 LFEILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG--WFRSKNVKDAERFWLEMRKENVTPNVVT--Y 147 (396)
Q Consensus 74 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~ 147 (396)
-|..|-.++.. .|+-..|.++-.+..+. +..|......++.+ ..-.|+++.|.+-|+.|... |.... +
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhH
Confidence 36666666554 57888888888776643 22344455555543 34579999999999999863 23222 2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCchh--hHHHHHHHH
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE-PGPTMV--TYTSLVKGY 224 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~ 224 (396)
..|.-...+.|+.+.|..+-++....- +.-.......+...+..|+|+.|+++++.-.+.. +.++.. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 233333456789999998888877663 3345677889999999999999999998876542 223322 122222221
Q ss_pred ---HhcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 016027 225 ---CKAGDLEGASKILKMMISRGFLPSPT-TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKL 300 (396)
Q Consensus 225 ---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (396)
.-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+.... +..... ..+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~l--Y~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH--PDIALL--YVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHH--HHHhcCCCc
Confidence 1124566677666666654 44432 2334457788999999999999999887544 443332 234455553
Q ss_pred HHHHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCchHHHHHH
Q 016027 301 DLAIQVSKEMKCR-GCDI-DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-KKRGMTALAQKLC 377 (396)
Q Consensus 301 ~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~ 377 (396)
+..-+++..+. ..+| +..+...+..+-...|++..|..--+...+. .|....|..+.+.- ...|+-.++..++
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 44444443332 1222 5667777888888899999998887777653 67788888777765 4569999999999
Q ss_pred HHHhccchhhh
Q 016027 378 NVMSSVPRSME 388 (396)
Q Consensus 378 ~~~~~~~~~~~ 388 (396)
-+..+.|..|.
T Consensus 387 Aqav~APrdPa 397 (531)
T COG3898 387 AQAVKAPRDPA 397 (531)
T ss_pred HHHhcCCCCCc
Confidence 99888776654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0074 Score=44.47 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=50.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhhH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV-----CEPGPTMVTY 217 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 217 (396)
+...++..+...|++++|..+++.+.... +.+...+..++.++...|+...|.+.|+++.. .|..|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667777888889999999988888875 56777888889999999999998888887653 4777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.058 Score=48.30 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+...+...+.+...+..|-++|..|-. ...++......++|++|..+-+..-+. -...|....+.++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----cccccchHHHHhh
Confidence 333344444444555556666655432 223455556666666666655543322 1223334444455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 816 E~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555555543 456677888888888887653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.004 Score=49.49 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-ChhHHHHHHHHHH
Q 016027 78 LLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-P-NVVTYGTLVEGYC 155 (396)
Q Consensus 78 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~ 155 (396)
....+.+.|++..|...|....+.-|+-.-....+.-|..++...|+++.|..+|..+.+.-+. | -+.++--|..+..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 3334446666777777777777766655445555666777777777777777777777665211 1 2345666666677
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 016027 156 RLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~ 173 (396)
+.|+.++|..+|+++.+.
T Consensus 227 ~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 227 RLGNTDEACATLQQVIKR 244 (262)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 777777777777777766
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.031 Score=44.20 Aligned_cols=70 Identities=17% Similarity=0.021 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
...|..-+....+.|++++|...|+.+....+. .|-...+...++.++.+.++++.|+..+++.....|+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~--s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF--SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 456777777777888888888888877765432 2444556666777777778888888888877776554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.016 Score=50.01 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=101.6
Q ss_pred CchhHHHHHHHHhCC-CCCCCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 10 EFDSAWCLLLDKIGG-HEVPDFVSKDTFVILIRRYARA---------GMVEAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 10 ~~~~A~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
..+.|+.+|.+++.. ..+|+. ..+|..++.++... ....+|.+.-+++.+.+ +.|+.+...++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~--a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-----~~Da~a~~~~g 345 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK--TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-----TVDGKILAIMG 345 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-----CCCHHHHHHHH
Confidence 456788899999922 135653 44555555544432 34557888888888876 88899999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHccC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 158 (396)
.+....++++.|..+|+++...+|+ ...+|....-...-.|+.++|.+.+++..+..+. .-.......+..|+. .
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~ 421 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-N 421 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-C
Confidence 9888889999999999999988766 4556666666667789999999999987665322 112233333445554 3
Q ss_pred CHHHHHHHHHH
Q 016027 159 RVDRAIRLVKE 169 (396)
Q Consensus 159 ~~~~a~~~~~~ 169 (396)
..+.|+++|-+
T Consensus 422 ~~~~~~~~~~~ 432 (458)
T PRK11906 422 PLKNNIKLYYK 432 (458)
T ss_pred chhhhHHHHhh
Confidence 45667666643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.081 Score=48.24 Aligned_cols=315 Identities=10% Similarity=0.059 Sum_probs=174.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh--HHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV--KAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
.++.-+...+.+..|+++-..+.... .....+|......+.+..+. +++++.+++-... .. -....|..+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~-----~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~--~~-~~~iSy~~i 513 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPE-----SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA--KL-TPGISYAAI 513 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcc-----ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc--cC-CCceeHHHH
Confidence 56777788888999998887775532 12256788888888877432 2233333322221 11 245578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC----CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----------CCCCHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVT----PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-----------IEPNAI 180 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~ 180 (396)
+.-....|+++-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+...- .+....
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 88888999999998887642211100 112233444555666777766666655554331 111111
Q ss_pred HHHHHHH--------HHHHcCCHHHHHHHH--HHHHhc-CCCCchhhHHHHHHHHHhcCChHHH----------HHHHHH
Q 016027 181 VYNTVID--------GLVEAGRFEEVSGMM--ERFLVC-EPGPTMVTYTSLVKGYCKAGDLEGA----------SKILKM 239 (396)
Q Consensus 181 ~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~ 239 (396)
.|.-+++ -+.+.++-.++...| +..... ...+-........+.+.+.....-. ..+.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2222221 011111111121111 110000 0111112223344445444332111 112222
Q ss_pred HHH-CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 016027 240 MIS-RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDID 318 (396)
Q Consensus 240 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 318 (396)
+.. .+.....-+.+--+.-+...|+-.+|.++-.+.. -||...|..-+.+++..+++++-+++-+... .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------s 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------S 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence 221 1222333455555666677788888888776653 4688888888899999999988777655443 3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
+.-|.....+|.+.|+.++|.+.+-+.-. +.....+|.+.|++.+|.+..-+
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 56677888999999999999988765421 11566778888888888765433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0054 Score=52.68 Aligned_cols=71 Identities=21% Similarity=0.025 Sum_probs=61.0
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
-|.++..++.++.+|...|++++|+..|+++.+.+|+...-..+|..+..+|...|++++|+..+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999886552111146999999999999999999999999885
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.024 Score=44.23 Aligned_cols=207 Identities=16% Similarity=0.096 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..|.....+|....++++|...+.++.+-. ..+...| ... ..++.|.-+.+++.+.+ .-+..|+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-----Ennrslf-hAA------KayEqaamLake~~kls----Evvdl~e 95 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-----ENNRSLF-HAA------KAYEQAAMLAKELSKLS----EVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-----HhcccHH-HHH------HHHHHHHHHHHHHHHhH----HHHHHHH
Confidence 467778888999999999999999888632 2222222 122 22344444444444431 1234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCChh--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKE--NVTPNVV--TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
.....|..+|..+.|-..+++.-+. ++.|+.. .|..-+......++...|.+++. ...+.+
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g---------------k~sr~l 160 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG---------------KCSRVL 160 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH---------------HhhhHh
Confidence 5555666666666666555554321 2333321 23323333333333333333332 223334
Q ss_pred HHcCCHHHHHHHHHHHHhc----CCCCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHhc
Q 016027 190 VEAGRFEEVSGMMERFLVC----EPGPT-MVTYTSLVKGYCKAGDLEGASKILKMMISR---GFLPSPTTYNYFFRYFSK 261 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 261 (396)
.+...+++|-..+.+-... ...++ -..|...+-.+.-..++..|...++.-.+. .-+-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 4444444443333222110 01111 233445555555666677777777664332 1223455666666665 3
Q ss_pred cCCHHHHHHHH
Q 016027 262 FGKVEDAMNLY 272 (396)
Q Consensus 262 ~~~~~~a~~~~ 272 (396)
.|+.+++.+++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 46666555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00042 Score=44.67 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CCC-hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW---APT-VRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
..+++.++..|...|++++|+..|+++....... .|. ..+++.+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777788888888888888887766441111 122 4556677777777777777777777654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.065 Score=45.00 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... .-.+..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444556667777777776655542 35777788888888888888876665432 123466777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (396)
+.|...+|..++.++. +..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888877776621 1445667788888888776643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00059 Score=38.12 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
+|..++..|.+.|++++|+++|+++.+.. |.++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-----P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-----PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHhh
Confidence 67778888888888888888888888874 77777766654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.052 Score=42.99 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
.+..-+..-.+.|++++|.+.|+.+....|.-+-...+.-.++.++.+.++++.|+...++....-+.-...-|...|.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 34445555667888999999998888877776666777777888888888888888888888776333233344444444
Q ss_pred HH
Q 016027 154 YC 155 (396)
Q Consensus 154 ~~ 155 (396)
.+
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 43
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=49.52 Aligned_cols=110 Identities=13% Similarity=-0.058 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
...-+..+.+.|++..|...|+++...-.... +. +.++..... . .-..+++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~-~~----------------~~ee~~~~~-~---------~k~~~~lNl 263 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR-SF----------------DEEEQKKAE-A---------LKLACHLNL 263 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc-cC----------------CHHHHHHHH-H---------HHHHHhhHH
Confidence 34456688889999999999888766421000 00 001111110 0 012244455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+.++.+.+++..|+...++.+..+ ++|...+-.-..++...|+++.|+..|+.+++.
T Consensus 264 A~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 264 AACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555555555555555555555543 224445444555555555555555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.053 Score=42.40 Aligned_cols=211 Identities=15% Similarity=0.108 Sum_probs=115.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
.-...|.....+|...+++++|...+.++.+- ...+...|.. ...++.|.-+.+++.+. .--...|+-
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~---yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eK 96 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKG---YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEK 96 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 33556777778888889999999988887742 1122222221 22334444444444432 112234445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHH
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-----GPTMVTYTSLVKGY 224 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 224 (396)
....|...|.++.|-..+++.-+. ...-++++|+++|++....-. ..-...+....+.+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 556677777777666666554332 112223334444433322100 01122334444556
Q ss_pred HhcCChHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHh
Q 016027 225 CKAGDLEGASKILKMMIS----RGFLPS-PTTYNYFFRYFSKFGKVEDAMNLYRKMIESG---YTPDRLTYHILLKILCK 296 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 296 (396)
.+...+++|-..+.+-.. -.--++ -..|...|-.+....++..|...++.--+.+ -+-+..+...|+.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 666666665554433221 111122 2346666667778889999999999854432 2335677888888764
Q ss_pred cCCHHHHHHHHHH
Q 016027 297 EDKLDLAIQVSKE 309 (396)
Q Consensus 297 ~~~~~~a~~~~~~ 309 (396)
.|+.+++..++..
T Consensus 240 ~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 240 EGDIEEIKKVLSS 252 (308)
T ss_pred cCCHHHHHHHHcC
Confidence 5888888777653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.077 Score=43.95 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=69.0
Q ss_pred hhhccCchhHHHHHHHHhCCC--CCCCCC--ChhHHHHHHHHHHHcC-CHHHHHHHHHHHhhc----ccccCCCCc----
Q 016027 5 LAKAKEFDSAWCLLLDKIGGH--EVPDFV--SKDTFVILIRRYARAG-MVEAAIWTFEFANNL----DMVKNFDSG---- 71 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~~~~~~~~~---- 71 (396)
..++|+++.|..++.++-... ..|+.. -...++.++......+ +++.|..+++++.+. .......++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457888889988887765432 133311 0124555666666777 888888888777665 111111111
Q ss_pred -hhHHHHHHHHHHHcCChH---HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 72 -ASLFEILLDSLCKQGRVK---AASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 72 -~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 233445555555555433 3334444443321 112334444445555566666666666666654
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.055 Score=41.51 Aligned_cols=66 Identities=21% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
|.-+.+|+.++--+...|+++.|.+.|+...+.+|+ ...+...-.-.+.-.|+++-|.+-+...-+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 445555666666666666666666666666555433 111111111222334555555555444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.019 Score=41.08 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+..+..-+....+.|++++|.+.|+.+...-|..+-...+.-.++.++.+.+++++|...+++.++..+.-...-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34455566677788999999999999988877666667778889999999999999999999998875443334455555
Q ss_pred HHHHc
Q 016027 152 EGYCR 156 (396)
Q Consensus 152 ~~~~~ 156 (396)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.017 Score=40.17 Aligned_cols=97 Identities=19% Similarity=0.056 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC-ChHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP-TVRVYNILL 116 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 116 (396)
.-+.++...|+.+.|++.|.+++..- |..+.+|+.-..++.-+|+.++|++=++++.+...+... --..|..-.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~-----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLA-----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhc-----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 44567788999999999999998874 888899999999999999999999999998887433111 112344445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..|-..|+-+.|..-|+..-+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 56677888888888888777665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.11 Score=43.64 Aligned_cols=282 Identities=16% Similarity=0.146 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+|..++......|+.+-|..+++. .|.+ ..-+..+.+.|+.+.| +.++.+. + .|| -+|..
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~----------Ep~~---~~qVplLL~m~e~e~A---L~kAi~S--g-D~D-Li~~v 61 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL----------EPRA---SKQVPLLLKMGEDELA---LNKAIES--G-DTD-LIYLV 61 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc----------CCCh---HHHHHHHhcCCchHHH---HHHHHHc--C-Ccc-HHHHH
Confidence 367788888999999999888772 2222 2335566677887777 3444443 2 223 24555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
++..--+.. .. +++ .++.. .|.. ..+...|++..+.+.-..+|..- + .........+-.++. ..+
T Consensus 62 Ll~L~~~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~---d-~~~~~a~~~l~~~~~-~~~ 126 (319)
T PF04840_consen 62 LLHLKRKLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQE---D-RFQELANLHLQEALS-QKD 126 (319)
T ss_pred HHHHHHhCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhc---c-hHHHHHHHHHHHHHh-CCC
Confidence 554332222 11 233 33332 2222 23444566655655544444321 1 001111111112222 234
Q ss_pred HHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHhcCChHHHHHHHHH---HHH-CCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 195 FEEVSGMMERFLVCEPG-PTMVTYTSLVKGYCKAGDLEGASKILKM---MIS-RGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.-...+..+.+.--. .+......++ ++-.++++. +.. .+......+.+..+.-+...|+...|.
T Consensus 127 ~~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~ 197 (319)
T PF04840_consen 127 VEEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAE 197 (319)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHH
Confidence 33333333333221000 1111111111 111122211 111 111122335556677777889988888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 016027 270 NLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
++-.+. . .|+...|..-+.+++..++|++-..+... . -++.-|..++.+|.+.|+..+|..+..++
T Consensus 198 kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~~yI~k~---- 263 (319)
T PF04840_consen 198 KLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEASKYIPKI---- 263 (319)
T ss_pred HHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHHHHHHhC----
Confidence 886655 2 46889999999999999999988876432 1 25688999999999999999999887762
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 350 LVPHYLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 350 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
+ +..-+..|.+.|++.+|.+..-+.
T Consensus 264 -~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 264 -P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred -C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 2 244556778888888887664443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.046 Score=47.31 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHh---hcccccCCCCchhHHHHHHHHHHHc---------CChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 48 MVEAAIWTFEFAN---NLDMVKNFDSGASLFEILLDSLCKQ---------GRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 48 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
..+.|+.+|.++. ..+ |.....|..+..++... .+..+|.+.-+++.+.++. |......+
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-----p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~---Da~a~~~~ 344 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-----TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV---DGKILAIM 344 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-----cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC---CHHHHHHH
Confidence 4457888899998 443 55566676666655443 2345677777777777655 77777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCC
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 194 (396)
..+..-.++++.|...|++....++. ...+|........-.|+.++|.+.+++..+.. ...........+..|+..+
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~- 422 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP- 422 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-
Confidence 77777777788888888888776433 45566666666667788888888888866552 1111222333344444433
Q ss_pred HHHHHHHHHH
Q 016027 195 FEEVSGMMER 204 (396)
Q Consensus 195 ~~~a~~~~~~ 204 (396)
.+.|+++|-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 5556665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.17 Score=45.08 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016027 248 SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH 327 (396)
Q Consensus 248 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 327 (396)
+..+|...+..-...|+++.+.-+|++..-- +..-...|-..+......|+.+-|..++....+-..+-.+.+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456777777778888888888888776542 122334455555555556888888877777766544423333222233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCchHHH
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLT-FKRLNDEFKKRGMTALAQ 374 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 374 (396)
..-..|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 3344678888888888887742 54322 223334455677777766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.02 Score=40.52 Aligned_cols=52 Identities=10% Similarity=-0.150 Sum_probs=43.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 016027 314 GCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR-RGLVPHYLTFKRLNDEFK 365 (396)
Q Consensus 314 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 365 (396)
...|+..+..+++.+|+..|++..|+++++.+.+ .+++.+..+|..|++-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999999999999998876 567777888999888543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=35.00 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
.++..+...|...|++++|.++|+++.+.+|+ |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 45777888888888888888888888887655 566665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.13 Score=41.74 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.....|++.+|..+|+........ +......++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566777777777666655333 4455566667777777777777776665443211112222233444444444444
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCCHH
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR--GFLPSPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 266 (396)
...+-.++-.. + .|...-..+...+...|+.+.|.+.+-.+.+. +.. |...-..++..+.-.|.-+
T Consensus 222 ~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 43433333321 2 25555566666677777777777666655544 222 4455556666665555333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=42.03 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLE---GASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
.+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|...- ......+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35566777777776644 4555666665442 2234555566677777788888888888887762 21233444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHcCCCCChh-hHHH-HHHH---HHhcCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 016027 292 KIL---CKEDKLDLAIQVSKEMKCRGCDIDLD-TSTM-LIHL---LCRMYK------FDEASAEFEDMIR-RGLVPHYLT 356 (396)
Q Consensus 292 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~~---~~~~~~------~~~a~~~~~~~~~-~~~~p~~~~ 356 (396)
..+ .. .....+...+..+....+.|... .... ++.. ....++ .+....+++...+ .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 433 33 23345666666655444444443 1111 1111 112212 3334444443332 233334433
Q ss_pred HHHH-------HHHHHHcCCchHHHHHHHH
Q 016027 357 FKRL-------NDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 357 ~~~l-------~~~~~~~g~~~~A~~~~~~ 379 (396)
-.++ ...+.+.+++++|.++|+-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3322 2245678999999999985
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.07 Score=47.76 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch-----hHHHHHHHHHHH----cCChHHHHHHHHHHhhccCCC
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA-----SLFEILLDSLCK----QGRVKAASEYFHKRKELDQSW 105 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~ 105 (396)
.+..++....-.|+-+.+++.+.+..+...+ .... -.|+..+..++. ....+.|.+++..+...-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--- 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--- 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---
Confidence 5777888888888888888888888775422 2111 123344443333 456778888888887753
Q ss_pred CCChHHHH-HHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 016027 106 APTVRVYN-ILLNGWFRSKNVKDAERFWLEMRKEN---VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 106 ~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
|+...|. .-.+.+...|++++|++.|++..... .+.....+--++-++.-..+|++|...+..+.+.. .-+..+
T Consensus 264 -P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~ 341 (468)
T PF10300_consen 264 -PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAF 341 (468)
T ss_pred -CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHH
Confidence 3444443 44566677888888888888655321 12233445556677778888888888888888764 333444
Q ss_pred HHHHH-HHHHHcCCH-------HHHHHHHHHHHh
Q 016027 182 YNTVI-DGLVEAGRF-------EEVSGMMERFLV 207 (396)
Q Consensus 182 ~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 207 (396)
|.-+. .++...|+. ++|..+|.++..
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44333 344556666 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.019 Score=39.97 Aligned_cols=93 Identities=19% Similarity=0.086 Sum_probs=75.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
++...|+++.|++.|.+.+.. -|.. ..+|+.-++++.-+|+.++|++-++++.+..... ...-...|..-+..|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 456789999999999999874 4442 4599999999999999999999999999875221 2233455667778888
Q ss_pred HcCChHHHHHHHHHHhhc
Q 016027 84 KQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (396)
..|+.+.|..=|+.+.+.
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 999999999999998877
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.22 Score=42.81 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
++.|..-...+...++-++|++..++.... .+.....+...|.-.++-++....|++..+. ...-
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~--------spsL~~~lse~yel~nd~e~v~~~fdk~~q~-------L~r~ 366 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM--------SPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-------LKRK 366 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC--------CCchheeHHHHHhhcccHHHHhhhHHHHHHH-------HHHH
Confidence 556776667777777777777776655443 2223344555555555666555566554431 1111
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 016027 113 NILLNGWFR---SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDG 188 (396)
Q Consensus 113 ~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 188 (396)
...+.+-+. .|+++...+++-+-+. .-..+|..+++...+..-++.|..+|-++.+.| +.++..++++++..
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~ 442 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY 442 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH
Confidence 111111111 2233222222211111 134456666676667777777777777777776 45666666777764
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCCH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVT-YTSLVKGYCKAGDLEGASKILKMMISRGFLPS--PTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 265 (396)
+ ..|+..-|.++|+.-+... ||... -.-.+..+...++-+.|..+|+....+ +..+ ...|..++..-..-|+.
T Consensus 443 ~-~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 443 Y-ATGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred H-hcCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 4 3566777777777665542 23222 234455666677777777777755443 1212 45677777777777777
Q ss_pred HHHHHHHHHHHHC
Q 016027 266 EDAMNLYRKMIES 278 (396)
Q Consensus 266 ~~a~~~~~~~~~~ 278 (396)
..+..+=+.+.+.
T Consensus 519 N~v~sLe~rf~e~ 531 (660)
T COG5107 519 NNVYSLEERFREL 531 (660)
T ss_pred HHHHhHHHHHHHH
Confidence 7766666666553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.042 Score=38.90 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 61 (396)
..++..++.++++.|+.+....+++..-.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg 30 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG 30 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC
Confidence 34556666666666666666666655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.16 Score=45.51 Aligned_cols=179 Identities=13% Similarity=0.105 Sum_probs=121.8
Q ss_pred HHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh-----HHHHHHHHHHHh----cC
Q 016027 53 IWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV-----RVYNILLNGWFR----SK 123 (396)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~ 123 (396)
.-+|+-+... +||. +..++....=.|+-+.+++.+....+. .++.-.. -.|+..+..+.. ..
T Consensus 177 ~G~f~L~lSl-----LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~ 247 (468)
T PF10300_consen 177 FGLFNLVLSL-----LPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDV 247 (468)
T ss_pred HHHHHHHHHh-----CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 4455555554 2543 566777777789999999999988774 4544322 234444444333 45
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHH-HHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHH
Q 016027 124 NVKDAERFWLEMRKENVTPNVVTYG-TLVEGYCRLRRVDRAIRLVKEMRKEG---IEPNAIVYNTVIDGLVEAGRFEEVS 199 (396)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 199 (396)
+.+.|.++++.+.++ -|+...|. .-.+.+...|++++|++.++...... .+.....+--+...+.-..+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 788999999999987 34555544 45677888999999999999766421 1223344555667788899999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHH-HHHhcCCh-------HHHHHHHHHHHHC
Q 016027 200 GMMERFLVCEPGPTMVTYTSLVK-GYCKAGDL-------EGASKILKMMISR 243 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~~~~ 243 (396)
..|..+.+... .+...|.-+.. ++...++. ++|.++|.++...
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999988643 34555554433 44556777 8899999887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.069 Score=43.86 Aligned_cols=118 Identities=8% Similarity=-0.082 Sum_probs=50.6
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
+|++.+|...+++.++. .|. +.-++...=.++..+|+.+.-...++++... --.++|-...+...+.-++..+|-
T Consensus 116 ~g~~h~a~~~wdklL~d--~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh--Cch--hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34444444444444442 222 1334444444445555555555444444432 001223223333333444444555
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWL 133 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (396)
+++|.+.-++..+.++. |...-.+....+-..+++.++.+...
T Consensus 191 y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred chhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555555555444332 33334444444444455555544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.03 Score=46.39 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCh
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-----VTPNV 144 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 144 (396)
.+|..+.+++.+.-++.+++.+-..-... |+..| -......+..++.-.+.++++++.|+...+-. .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 34445555555555555554444433332 22222 01122223344444444555555554443210 01112
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHH
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
..+..|...|....|+++|.-+..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhH
Confidence 244445555555555555444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.22 Score=40.36 Aligned_cols=147 Identities=11% Similarity=0.039 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.-.......|++.+|...|..+.... +.+..+...++.+|...|+.+.|..++..+...... ........-+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~i~ 211 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA-----PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQIE 211 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC-----cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHHHH
Confidence 34445667777777777777777664 555666677777777777777777777765543111 11111122334
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcC
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 193 (396)
.+.+.....+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -..|...-..++..+...|
T Consensus 212 ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444444444433322 1145555556666666677776666555554432 1223344445555554444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.39 Score=42.91 Aligned_cols=327 Identities=10% Similarity=0.035 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++.---.....+.+...++.+... .|.--..|...+..-.+.|..+.+.++|++... +++.+...|
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-----yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~---aip~SvdlW 116 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK-----YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ---AIPLSVDLW 116 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh-----CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hhhhHHHHH
Confidence 346666666544555556666666666653 355555677777777788999999999999887 555677777
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhC-CCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 113 NILLNGWF-RSKNVKDAERFWLEMRKE-NVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 113 ~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
......+. ..|+.+...+.|+..+.. |.. .+...|...+..-...+++.....+|+++++.. ...++....-|
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f 192 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRF 192 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHH
Confidence 76665444 357778888888887764 322 245567777877777888899999999888652 22222222222
Q ss_pred H---Hc------CCHHHHHHHHHHHHhc----CCCCchhhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 190 V---EA------GRFEEVSGMMERFLVC----EPGPTMVTYTSLVKGYCK-AGDLEGASKILKMMISRGFLPSPTTYNYF 255 (396)
Q Consensus 190 ~---~~------~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 255 (396)
. .. ...+++.++-...... ...........-+.--.. .+..+.+....... ...-
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-----------~~~~ 261 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI-----------VSIH 261 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-----------HHHH
Confidence 1 11 1223333222222110 000000111111000000 00011111111110 0111
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC---CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016027 256 FRYFSKFGKVEDAMNLYRKMIES---GY----TPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHL 328 (396)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (396)
-.++.....+.+....++.-.+. .+ .++..+|...+..-...|+.+.+.-++++..-. +..=...|-..+.-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHH
Confidence 11222222333333334433332 11 224567888888888999999999999987632 12234556666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHhccc
Q 016027 329 LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN-DEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 329 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
....|+.+-|..++....+--.+ +......+- ...-..|+++.|..+++.+.+.-
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 66679999888888777663322 222222222 23345789999999999987755
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.33 Score=41.87 Aligned_cols=347 Identities=14% Similarity=0.112 Sum_probs=174.7
Q ss_pred hhhccCchhHHHHHHHHhCC--CCCCCCCChhH---------HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchh
Q 016027 5 LAKAKEFDSAWCLLLDKIGG--HEVPDFVSKDT---------FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGAS 73 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 73 (396)
..+.+.+..|.+.+...-.. +..|...+... =...+.++...|++.++..+++++...-......-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34678889988887665543 12222111111 12457788999999999999999988643323346777
Q ss_pred HHHHHHHHHHHcC--------C-------hHHHHHHHHHHhhccC----CCCCChHHHHHHHHHHHhc--CChhHHHHHH
Q 016027 74 LFEILLDSLCKQG--------R-------VKAASEYFHKRKELDQ----SWAPTVRVYNILLNGWFRS--KNVKDAERFW 132 (396)
Q Consensus 74 ~~~~l~~~~~~~~--------~-------~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 132 (396)
+|+.++-.+.+.= . ++-+.-+..++...+. .+.|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8887555554321 1 1112222222222211 1222222222222222211 1122222233
Q ss_pred HHHHhCCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 133 LEMRKENVTPNVVT-YGTLVEGYCRLRRVDRAIRLVKEMRKEGIE----PNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+.....-+.|+-.. ...+...+.. +.+++..+.+.+....+. .=..+|..++....+.++...|.+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33322333444322 2233333333 444444444444332111 1133455666666666666666666655544
Q ss_pred cCCCC-------------------chhhHH------------------------HHHH---HHHhcCC-hHHHHHHHHHH
Q 016027 208 CEPGP-------------------TMVTYT------------------------SLVK---GYCKAGD-LEGASKILKMM 240 (396)
Q Consensus 208 ~~~~~-------------------~~~~~~------------------------~l~~---~~~~~~~-~~~a~~~~~~~ 240 (396)
..+.. |...++ .|+. -+=+.|. -++|..+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 32211 111111 1111 1112233 56677777777
Q ss_pred HHCCCCCChhhHHHHHH----HHh---ccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHH--HHHhcCCHHHHHHHH
Q 016027 241 ISRGFLPSPTTYNYFFR----YFS---KFGKVEDAMNLYRKMIESGYTPDR----LTYHILLK--ILCKEDKLDLAIQVS 307 (396)
Q Consensus 241 ~~~~~~~~~~~~~~l~~----~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~~~~~~a~~~~ 307 (396)
.+-. +-|...-|.+.. +|. .......-..+-+-+.+.|+.|-. ..-|.|.. .+...|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 6642 223333332221 121 122333444444444556766533 33444443 345679999987766
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 308 KEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
..+.+ +.|++.+|..++-++....++++|..++..+ +|+..++++-+
T Consensus 486 ~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 66655 4779999999999999999999999999765 67777766543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.1 Score=46.08 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=86.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
..+...-.|+++++.++...-.-. +.+| ......++.-+.+.|..+.|+.+.+. .. .-...
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll---~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----------~~---~rFeL 327 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLL---PNIP--KDQGQSIARFLEKKGYPELALQFVTD-----------PD---HRFEL 327 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTG---GG----HHHHHHHHHHHHHTT-HHHHHHHSS------------HH---HHHHH
T ss_pred HHHHHHHcCChhhhhhhhhhhhhc---ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----------hH---HHhHH
Confidence 445556677777766665422111 1223 33466677777777777777765432 21 22334
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
..+.|+++.|.++.++. .+...|..|.......|+++-|.+.|.+..+ +..++-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 55677777777664332 2666777777777777777777777765432 34555566677777766
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKM 239 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 239 (396)
.++.+.....|- ++....++.-.|+.+++.+++..
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655432 33444445556676666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.16 Score=44.96 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=96.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
...-.++++++.++...-.-. +..+....+.++..+.+.|.++.|+++.. |+.+ -.....+.|+.+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHH
Confidence 344567777766666421111 11124456777777778888888877643 2222 2334456688888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
|.++.++ ..+...|..|.......|+++-|.+.|++..+ +..|+-.|...|+.+...++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7775533 23667888888888888888888888877653 45566667777887777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 348 RGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 348 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.| -++....++.-.|+.++..+++.+-.+.|..
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence 55 2455555666678888887777776555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.26 Score=39.46 Aligned_cols=225 Identities=20% Similarity=0.132 Sum_probs=136.1
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCC--chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDS--GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK 123 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (396)
.+....+...+....... +. ....+......+...+++..+...+...... .........+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELL-----PNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcC-----ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHh
Confidence 456666666666666652 21 2455666777777777777777777766541 011224555666666666677
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 016027 124 NVKDAERFWLEMRKENVTPNVVTYGTLVE-GYCRLRRVDRAIRLVKEMRKEGI--EPNAIVYNTVIDGLVEAGRFEEVSG 200 (396)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 200 (396)
++..+...+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 7777777777776643332 122222222 56677777777777777755211 1223333444444666778888888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 201 MMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
.+..............+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8887776533213566777777777777888888888877775322 2334444444444666688888888777765
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.029 Score=44.82 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCCChHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC----------------CHHH
Q 016027 104 SWAPTVRVYNILLNGWFR-----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR----------------RVDR 162 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~ 162 (396)
+-+.|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 334577777777776654 3567777778889999999999999999998865432 3345
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
+++++++|...|+-||..+-..+++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77888888888888888888888888877665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=46.61 Aligned_cols=203 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred HHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHH
Q 016027 19 LDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKR 98 (396)
Q Consensus 19 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 98 (396)
+++.+.+..|+ -..++..++-.|++.+|-++|.+.-..+.....-.|...| -.++-+...|..++-..+.++-
T Consensus 624 ~~~k~rge~P~------~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 624 EERKKRGETPN------DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHHhcCCCch------HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHH
Confidence 44444444565 2246777888889999888888665432111111111111 1334444455554444444432
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH------HHhCCCC---CChhHHHHHHHHHHccCCHHHHHHHHHH
Q 016027 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLE------MRKENVT---PNVVTYGTLVEGYCRLRRVDRAIRLVKE 169 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 169 (396)
..... ++.-=...+..+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+.-|-++|..
T Consensus 697 A~WAr----~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 697 ADWAR----NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHhh----hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 22111 111112344555667777777665421 1111111 1233444444444555556666666665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----------hhHHHHHHHHHhcCChHHHHHHHH
Q 016027 170 MRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-----------VTYTSLVKGYCKAGDLEGASKILK 238 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 238 (396)
|-+. ..++......++|++|..+-++.-+. .++. .-|...-.+|.+.|+-.+|..+++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 5322 34556667778888888877765432 1221 112333456677777777777777
Q ss_pred HHHHC
Q 016027 239 MMISR 243 (396)
Q Consensus 239 ~~~~~ 243 (396)
++...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 76654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.2 Score=37.04 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=52.3
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHH--HHHHHHHccCCH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV-TYG--TLVEGYCRLRRV 160 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~~~~ 160 (396)
+.+..++|+.-|..+.+.+.+--|. ...........+.|+...|...|++.-.....|-.. -.. --.-.+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Ypv-LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPV-LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchH-HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4444555555555555443332221 112223333444555555555555554432222211 000 111123344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555554444433222233333444445555555555555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=42.04 Aligned_cols=116 Identities=10% Similarity=-0.054 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCCCCCChHHHHHHHHHHHhcCC
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-DQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
.|++.+|-..++++.+. +|.|.-++...=.+|...|+...-...++++... +++.+-...+-.....++...|-
T Consensus 116 ~g~~h~a~~~wdklL~d-----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh-----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34444444444444442 3444444444444444444444444444444322 11111111111222233344455
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 016027 125 VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLV 167 (396)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 167 (396)
+++|++.-++..+.+. -|..+-.+....+--.|+..++.++.
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5555554444444321 13333333444444444444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0039 Score=32.37 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=21.6
Q ss_pred HHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHH
Q 016027 56 FEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAAS 92 (396)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 92 (396)
|+++++.+ |.++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~-----P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-----PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-----CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555554 677777777777777777777764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.6 Score=40.98 Aligned_cols=150 Identities=16% Similarity=0.250 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.++...-+..+.+.-++.-.++.+.. |..+.+|..|..- ......+|.++++++.+... ..+. .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-----pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE------~~lg---~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-----PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE------ASLG---K 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-----hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH------Hhhc---h
Confidence 44555556667777777777777763 4344444444332 34457788888888765411 1111 0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 196 (396)
.... +..-..++.+..+...|-..+-..+..++.+.|+.++|++.+++|.+.... ....+...|+.++...+.+.
T Consensus 237 s~~~----~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 237 SQFL----QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhh----hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0000 000011111222222222333344566666667777777777766654211 12334556666677777777
Q ss_pred HHHHHHHHHHh
Q 016027 197 EVSGMMERFLV 207 (396)
Q Consensus 197 ~a~~~~~~~~~ 207 (396)
++..++.+..+
T Consensus 313 d~q~lL~kYdD 323 (539)
T PF04184_consen 313 DVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhcc
Confidence 77766666543
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.91 Score=41.89 Aligned_cols=313 Identities=10% Similarity=0.080 Sum_probs=168.0
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH--HHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV--EAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
|+-+...+.|..|+++..- +.. |.......|...+..+.+..+. +++++.+++=.... . .....|..++
T Consensus 444 i~Rl~~r~~Y~vaIQva~~-l~~---p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~----~-~~~iSy~~iA 514 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKL-LNL---PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK----L-TPGISYAAIA 514 (829)
T ss_pred hHHHHhcchhHHHHHHHHH-hCC---ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc----C-CCceeHHHHH
Confidence 4455667788888887433 331 2211134566666666666322 22332222222211 1 2223366777
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----------CCCChh
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-----------VTPNVV 145 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~ 145 (396)
.-...+|+++-|..+++.=.... ...| +..-+...+.-+.+.|+.+-...++-.+...- .+....
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~-~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSG-EQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCcc-chhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 77778888888888777533321 1111 22334555666677777777776666554421 011111
Q ss_pred HHHHHHH--------HHHccCCHHHHHHHH--HHHHHcC-CCCCHHHHHHHHHHHHHcCCHH---HH-------HHHHHH
Q 016027 146 TYGTLVE--------GYCRLRRVDRAIRLV--KEMRKEG-IEPNAIVYNTVIDGLVEAGRFE---EV-------SGMMER 204 (396)
Q Consensus 146 ~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~ 204 (396)
.|.-+++ .+...++-.++..-+ +...... +.+-..........+.+..... +| +++.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111111 011111111221111 1100000 1111112233334444443311 11 122222
Q ss_pred HHh-cCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 016027 205 FLV-CEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283 (396)
Q Consensus 205 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (396)
+.. .+.....-+.+--+..+...|+-.+|.++-.+.. -||...|..-+.+++..++|++-+++-+... .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------s 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------S 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence 221 1222333445555667778899999988876654 4688899999999999999998777655432 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (396)
+..|.-++.+|.+.|+.++|.+++.+.... . -...+|.+.|++.+|.++--
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 567888899999999999999988766422 1 56788999999999887643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.6 Score=39.12 Aligned_cols=234 Identities=10% Similarity=0.026 Sum_probs=133.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHH----HHHhhccCCCCCChHHHHHHH
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYF----HKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~l~ 116 (396)
.-+....+.++|+..+.+....-. +....-.++..+..+....|.+++++..- +-+...+ ....-...|..+.
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~--~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~-ds~~~~ea~lnla 90 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLS--DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE-DSDFLLEAYLNLA 90 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHH--HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344566677777777666554310 11222334556677777778777765432 2222211 0001123455666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 016027 117 NGWFRSKNVKDAERFWLEMRKE-NVTPN---VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-----IEPNAIVYNTVID 187 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 187 (396)
.++-+.-++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+-. ......++..+..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666777777665544332 22221 1234456777777888888988888876531 1123456788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc----CCCCchh-----hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVC----EPGPTMV-----TYTSLVKGYCKAGDLEGASKILKMMISR----GFLP-SPTTYN 253 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 253 (396)
.|.+..++++|.-+..+..+. +...-.. ....|.-++...|..-.|.+.-++..+. |-.+ ......
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 889999998888776665442 2211111 1223444666677777777766665443 3111 123345
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 016027 254 YFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
.+.+.|...|+.+.|+.-|++...
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHH
Confidence 566778888888888887776543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.04 Score=41.63 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..-+.-+...|++++|..-|..++..-+..........|..-+.++.+.+.++.|+.-..++++++|. .......
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---y~kAl~R 173 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---YEKALER 173 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch---hHHHHHH
Confidence 4555566667777777777777777776322211223345566666777777777777777777777554 4444555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
-+.+|-+...+++|+.=|+++.+.
T Consensus 174 RAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 566777777777777777777765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.52 Score=37.61 Aligned_cols=223 Identities=17% Similarity=0.142 Sum_probs=119.6
Q ss_pred CChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEPNAIVYNTVIDGLVEAGRFEEVSG 200 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 200 (396)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555655555544222 12455666666667777777777776666542 223444555566666666677777777
Q ss_pred HHHHHHhcCCCCchhhHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 201 MMERFLVCEPGPTMVTYTSLVK-GYCKAGDLEGASKILKMMISRGF--LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777766643332 122222222 56667777777777777644211 01222333333334555666666666666665
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 278 SGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.........+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421112445555555666666666666666666654221 123333333333345556666666666555
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.36 Score=35.50 Aligned_cols=62 Identities=13% Similarity=-0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
.+..++..-.+.++.+++..++.-+.... |..+.+-..-+..+...|+|.+|..+|+.+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLR-----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLR-----PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44455555566677777777777776664 555555555566666777777777777776554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.4 Score=41.73 Aligned_cols=226 Identities=15% Similarity=0.052 Sum_probs=120.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC----CCchhhHHHHH
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVI-DGLVEAGRFEEVSGMMERFLVCEP----GPTMVTYTSLV 221 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 221 (396)
.....++.+|..++.++...-..|+. ..++.+- ......|+++.|.++.+.....-+ .+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887664222221 1222222 223457888998888877766422 23455667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhH---HHHH--HHHhccCCH--HHHHHHHHHHHHCC---CC---CChhhHH
Q 016027 222 KGYCKAGDLEGASKILKMMISRGFLPSPTTY---NYFF--RYFSKFGKV--EDAMNLYRKMIESG---YT---PDRLTYH 288 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~ 288 (396)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+. .+.+..+....... .+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999999888776654222233322 2222 234455632 23333333332221 01 1123344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 016027 289 ILLKILCKE-DKLDLAIQVSKEMKCRGCDIDLDTS--TMLIHLLCRMYKFDEASAEFEDMIRRG----LVPHYLTFKRLN 361 (396)
Q Consensus 289 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~ 361 (396)
.+..++.+. +...++..-+.-.......|-.... ..|+......|++++|...++++.... ..++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 1222222222222222222222222 267778888999999999988887632 233333333444
Q ss_pred HHH--HHcCCchHHHHHHHH
Q 016027 362 DEF--KKRGMTALAQKLCNV 379 (396)
Q Consensus 362 ~~~--~~~g~~~~A~~~~~~ 379 (396)
... ...|+..++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 432 457888887777666
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.98 Score=39.74 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRGCD-IDLDTSTMLIHLLCRMYKFDEASAEFEDMI 346 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (396)
.+..++-+.|+.++|.+.++++.+..+. -+..+...|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455556666666666665543221 123344555666666666666666655553
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.4 Score=41.25 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=62.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
|+.+.+..-++-|+.+... .+..++.. .......+.-+.+.|++++|.+.|-+.+..- .|. .++.-
T Consensus 341 L~iL~kK~ly~~Ai~LAk~---~~~d~d~~-~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-----e~s-----~Vi~k 406 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS---QHLDEDTL-AEIHRKYGDYLYGKGDFDEATDQYIETIGFL-----EPS-----EVIKK 406 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh---cCCCHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-----ChH-----HHHHH
Confidence 3455666677777765332 22233321 3445555666667788888877776665531 211 23344
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLE 134 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 134 (396)
+....+..+-..+++.+.+. + -.+...-..|+.+|.+.++.++..+..+.
T Consensus 407 fLdaq~IknLt~YLe~L~~~--g-la~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKK--G-LANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHc--c-cccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 44444555555555555553 2 12444556667777776666655555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.02 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.236 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 61 (396)
+|..|+.+|.+.|++++|+++|+++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777776443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.53 Score=34.26 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.++..+...+.+......++.+...+. .+...++.++..|++.+ ..+....+.. . .+.......++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 344444444555555555555554442 34445555555555432 2233333321 1 12223333455555555
Q ss_pred CHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEM 310 (396)
Q Consensus 299 ~~~~a~~~~~~~ 310 (396)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.21 Score=40.67 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIVYN 183 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 183 (396)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456667777777777777777777777664 33667777777777777777777777776655 36677666666
Q ss_pred HHHHH
Q 016027 184 TVIDG 188 (396)
Q Consensus 184 ~l~~~ 188 (396)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.041 Score=28.29 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..++.++...|++++|++.|+++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666666777777777777777766665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.042 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..++.++...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.51 Score=33.23 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
...+......|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444444444322 3444444444444555555555555444444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.12 Score=39.69 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+....+..+.+.+.+++|+...+.-.+.. |.+...-..+...++-.|+|++|..-++-+-...+...+-...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-----CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 35556777888899999999888777764 7888888889999999999999999998888887777777788888
Q ss_pred HHHHH
Q 016027 115 LLNGW 119 (396)
Q Consensus 115 l~~~~ 119 (396)
++.+-
T Consensus 78 lir~e 82 (273)
T COG4455 78 LIRCE 82 (273)
T ss_pred HHHHH
Confidence 87653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.22 Score=40.56 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK-----ENVTPNVVT 146 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 146 (396)
..++..++..+...|+++.+.+.++.+...+|- +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 446778888999999999999999999988765 777899999999999999999999988765 488888888
Q ss_pred HHHHHHHH
Q 016027 147 YGTLVEGY 154 (396)
Q Consensus 147 ~~~l~~~~ 154 (396)
........
T Consensus 230 ~~~y~~~~ 237 (280)
T COG3629 230 RALYEEIL 237 (280)
T ss_pred HHHHHHHh
Confidence 87777763
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.64 Score=33.83 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 016027 184 TVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 184 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (396)
.++..+...+.......+++.+...+. .+....+.++..|++.+ .......+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344445555556666666666555543 34555566666665442 2233333331 112333444555666666
Q ss_pred CHHHHHHHHHHH
Q 016027 264 KVEDAMNLYRKM 275 (396)
Q Consensus 264 ~~~~a~~~~~~~ 275 (396)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666655543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.27 Score=37.40 Aligned_cols=97 Identities=7% Similarity=0.042 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN--VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI- 186 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 186 (396)
..+..++..|.+.|+.+.|.+.|.++......+. ...+-.+++.....+++..+...+.+....--.........-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666666677777777777766665432222 2344556666666666666666665554431111111111111
Q ss_pred ----HHHHHcCCHHHHHHHHHHHH
Q 016027 187 ----DGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 187 ----~~~~~~~~~~~a~~~~~~~~ 206 (396)
-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11234566777666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.041 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
.+|..++.++...|++++|+..|+++.+.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.025 Score=29.30 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHH
Q 016027 95 FHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAE 129 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 129 (396)
|+++++.+|. +..+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666555 7778888888888888888775
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.049 Score=28.00 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
.++..++..+...|++++|++.|+++...+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577788888888888888888888877644
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.21 Score=37.92 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=74.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSWAP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR 156 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (396)
+.-+.+.|++++|.+-|..+...-|.... -...|..-..++.+.+.++.|+.-..+.++.++. ...+...-..+|-+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 45566889999999999998887765432 2345666777889999999999999999987644 55566666778889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 016027 157 LRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 157 ~~~~~~a~~~~~~~~~~ 173 (396)
...+++|+.=|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999887
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.81 Score=34.03 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV-TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV- 185 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 185 (396)
+...|...+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-..--..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555444 456677888888888888776542222 2233445566778888888888888765333322211111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 186 --IDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 186 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
.-.+...|.+++.....+.+...+.+.-...-..|..+-.+.|++..|.+.|..+......
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 1235667888888877777765544444555667777777888888888888888765333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.73 Score=33.34 Aligned_cols=61 Identities=11% Similarity=-0.066 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+..++..-...++++++..+++.+.-.. |..+.+-..-+..+...|+|.+|..+|+.....
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLr-----P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLR-----PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3344444455777777777777777664 555555555666677777888888887777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.31 Score=37.09 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
.+..++..|.+.|+.+.|.+.|.++.....+...-...+-.++......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345556666666666666666666554422222334445555555556666666655555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.4 Score=40.59 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHH
Q 016027 253 NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLD--TSTMLIHLLC 330 (396)
Q Consensus 253 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 330 (396)
.+....+.....+++|.-.|+..-+. ...+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 33334444555555555555443211 12345566666666666666655421 1211 1245666666
Q ss_pred hcCChhHHHHHHHHHHH
Q 016027 331 RMYKFDEASAEFEDMIR 347 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~ 347 (396)
..+++-+|-++..+...
T Consensus 1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HcccchhHHHHHHHHhc
Confidence 67777777666665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.24 Score=37.04 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=61.5
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV----------EAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
|+.|.+.++..... .|. +.+.++.-+.++....++ ++|+.-|++++..+ |....++..++.
T Consensus 7 FE~ark~aea~y~~--nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHH
Confidence 56677777666553 344 366666666665554333 44555566666664 777788888888
Q ss_pred HHHHcCC-----------hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 81 SLCKQGR-----------VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 81 ~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+|...+. +++|.+.|+++... .|+...|+.-+.... +|-++..++.+.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~----~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE----DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 8876542 45555555555544 356666766665542 345555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.035 Score=29.20 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 016027 357 FKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.6 Score=38.17 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=85.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
-+.--...|+...|-+-+..+.+. .|.++.............|+++.+...+..+... +.....+...+++.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~-----~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~ 366 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRN-----QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHh-----CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHh
Confidence 344445667777666555555543 2555555555566677788999888888776543 23355677788888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
..+.|+++.|..+-..|....++ +...........-..|-++++.-.|+++...+
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88889999999888888877665 55555544444555677888888888877654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=37.87 Aligned_cols=117 Identities=13% Similarity=0.017 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHH
Q 016027 16 CLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYF 95 (396)
Q Consensus 16 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 95 (396)
....++...++. +....-+-..++..+...|++++|...++......... .....+-..|.+.....|.+++|+..+
T Consensus 73 ~~~ekf~~~n~~-t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De--~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 73 AAAEKFVQANGK-TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE--NLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred HHHHHHHhhccc-cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH--HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344666665322 21112344577889999999999999999888642100 111223445778888999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 96 HKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
+..... ++ .......-.+.+...|+-++|..-|++.++.+
T Consensus 150 ~t~~~~--~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEE--SW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccc--cH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 998877 22 33445566788999999999999999999875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.84 Score=32.20 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=75.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 016027 225 CKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAI 304 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (396)
.-.|..++..++..+...+. +..-+|.++--....-+-+-..++++.+-+. .|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence 34677777888877777642 4555666655554445555555555554331 2221 123333332
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 305 QVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
..+-.+- .+.......+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.+
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2222211 134455566677778888888888888877533 6777788888888888888888888888766544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.33 Score=39.09 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=67.3
Q ss_pred CCChhHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 016027 141 TPNVVTYGTLVEGYCR-----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG----------------RFEEVS 199 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 199 (396)
+-|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3466677776666644 3566666777888889999999999999988764432 234477
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 200 GMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
+++++|...|+.||..+-..+++++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8888888888888888888888888877763
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.44 Score=35.67 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC----------hHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 49 VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR----------VKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 49 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
++.|.+.++.....+ |.|...++..+.++....+ +++|++-|+.+...+|. ...++..+..+
T Consensus 7 FE~ark~aea~y~~n-----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence 566777777666654 7788877777776665432 44566666667766554 44566666666
Q ss_pred HHhcC----C-------hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 119 WFRSK----N-------VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 119 ~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
+...+ + +++|...|++... ..|+...|+.-+.... +|-++..++.+.+
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 65433 2 5555666665555 3678888887777653 3556666666654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.3 Score=34.01 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhHHHHHHHHHHcc
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE---NVTPNVVTYGTLVEGYCRL 157 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 157 (396)
.+.+.|+ +.|.+.|-.+... +.--++.....|+..|. ..+.++++.++.+..+. +-.+|+..+..|+..+.+.
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~--~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGT--PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCC--CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3445555 5677777776653 22345555555555554 67788888888777654 3367788888888888888
Q ss_pred CCHHHHH
Q 016027 158 RRVDRAI 164 (396)
Q Consensus 158 ~~~~~a~ 164 (396)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 8888764
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.86 E-value=3.5 Score=38.72 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=92.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHhc---
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-GPTMVTYTSLVKGYCKA--- 227 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--- 227 (396)
..+.-.|+++.|++++-+ ..+...+..++...+..|.-.+-.+... ..+..... .+...-+..|+..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 444556788888877755 2223445555544444332222111111 22222111 11224577778777764
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhccCCHHHHH-----------HHHHHHHH-CCCCC-Chh---hHHHH
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFR-YFSKFGKVEDAM-----------NLYRKMIE-SGYTP-DRL---TYHIL 290 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-----------~~~~~~~~-~~~~~-~~~---~~~~l 290 (396)
.++..|.+.+--+....-+.....+...+. .....++++.-+ -++++-.. .+... +.. .....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 467777777776665432111222222221 112222221111 01111000 01111 111 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhcCC-----------hhHHHHHHHHHHHCC-----CC-C
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIH-LLCRMYK-----------FDEASAEFEDMIRRG-----LV-P 352 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-----------~~~a~~~~~~~~~~~-----~~-p 352 (396)
..-+...|+++.|..+|..+.+.. .-....+.++. +...... ...|..+.+.....+ +. .
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 344556778888887777665321 01122222222 2222222 223344443332211 11 1
Q ss_pred CHHHHHHHHH-----HHHHcCCchHHHHHHHHHhccchhhhhhhh
Q 016027 353 HYLTFKRLND-----EFKKRGMTALAQKLCNVMSSVPRSMELLDS 392 (396)
Q Consensus 353 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 392 (396)
+..|+..|++ .+.+.|++++|++.++++.-.|.++..+.+
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~~~~~V~~ 543 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPLDPSEVRR 543 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCCHHHHHH
Confidence 2345555544 236899999999999999888866555444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.7 Score=33.83 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
+.+||-+.-.+...|+++.|.+.|+...+.++..+-...|.-+ ++.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 4455555555566666666666666665544432222222222 222345566665555554444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.39 Score=39.84 Aligned_cols=94 Identities=17% Similarity=0.019 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 37 VILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 37 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
..-+.-|.++|.+++|+++|.+..... |.++.++..-..+|.+..++..|..=...+..++.. -+..|..-+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~-----P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y~KAYSRR~ 172 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY-----PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---YVKAYSRRM 172 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC-----CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---HHHHHHHHH
Confidence 344667888999999999999888874 668888888999999999998888877777665321 233455444
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.+-...|...+|.+-++..+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhh
Confidence 4444556666777666666654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.7 Score=37.92 Aligned_cols=194 Identities=13% Similarity=0.069 Sum_probs=114.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHhhcccccCCCC-chhHHHHHHHHHHHcCChH
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA-RAGMVEAAIWTFEFANNLDMVKNFDS-GASLFEILLDSLCKQGRVK 89 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 89 (396)
..|++.++.+.+...-|+.....+...++..+. ...+++.|...+++........++.. .-.....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445666666664333333333557778888877 78999999999998877632211111 1223446677777777666
Q ss_pred HHHHHHHHHhhccCCCCCChHH--HHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHHH--ccCCHH
Q 016027 90 AASEYFHKRKELDQSWAPTVRV--YNIL-LNGWFRSKNVKDAERFWLEMRKEN---VTPNVVTYGTLVEGYC--RLRRVD 161 (396)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~--~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 161 (396)
|...+++..+.-.+..-+... +.-+ +..+...+++..|.+.++.+...- ..|....+-.++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 999999877653332222222 2222 222333479999999998876542 2334444444555443 445567
Q ss_pred HHHHHHHHHHHcC---------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEG---------IEPNAIVYNTVIDGL--VEAGRFEEVSGMMERFL 206 (396)
Q Consensus 162 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 206 (396)
++++.++.+.... ..|...++..+++.+ ...|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777764322 133455666666554 45677767666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.2 Score=41.38 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=73.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVP-DFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
+-|.++|.|++|+..|...+.. .| + +..+..-+.+|.+..++..|..-.+.+..++ ..-..+|..-+.+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~N---pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-----~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHN---PVYHINRALAYLKQKSFAQAEEDCEAAIALD-----KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCC---ccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-----HHHHHHHHHHHHH
Confidence 4588999999999999999885 44 3 4578888889999999999998888888775 4445667777777
Q ss_pred HHHcCChHHHHHHHHHHhhccC
Q 016027 82 LCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
-...|...+|.+=++.+..+.|
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCc
Confidence 7778888888888888887644
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.12 E-value=3 Score=34.87 Aligned_cols=131 Identities=13% Similarity=0.219 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHhcCCC---CchhhHHHHHHHHHhcCC--
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE--AG----RFEEVSGMMERFLVCEPG---PTMVTYTSLVKGYCKAGD-- 229 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 229 (396)
++.+.+++.|.+.|+.-+..++-+....... .. ....|..+|+.|.+..+- ++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455677777777776666555543333322 12 245577778888776542 334445544433 3333
Q ss_pred --hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 230 --LEGASKILKMMISRGFLPSP--TTYNYFFRYFSKFGK--VEDAMNLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 230 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
.+.++.+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.++++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34556667777766655433 233333333332222 33667777777777777776666655443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.07 E-value=5.7 Score=37.90 Aligned_cols=222 Identities=10% Similarity=0.021 Sum_probs=118.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChh-------HHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVV-------TYGTLV-EGYCRLRRVDRAIRLVKEMRKE----GIEPNAIVYNTVID 187 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 187 (396)
....++.+|..+..++...-..|+.. .++.+- ......|+++.+.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44788999999988876653232222 233322 2234568889999988887765 12234455666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhh---HHHH--HHHHHhcCC--hHHHHHHHHHHHHCCC--C----CChhhHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVT---YTSL--VKGYCKAGD--LEGASKILKMMISRGF--L----PSPTTYNY 254 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~--~~~a~~~~~~~~~~~~--~----~~~~~~~~ 254 (396)
+..-.|++++|..+..+..+....-+... |..+ ...+...|+ +.+....|........ . +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77888999999988887766422223322 2222 223445563 3333344444333210 1 12234444
Q ss_pred HHHHHhccCCHHHHHHHHHH----HHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHH
Q 016027 255 FFRYFSKFGKVEDAMNLYRK----MIESGYTPDRLTY--HILLKILCKEDKLDLAIQVSKEMKCRGCDI----DLDTSTM 324 (396)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 324 (396)
++.++.+ .+.+..-... .......|-.... ..|+......|++++|...+.++......+ +-.....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 3333222222 2222222222222 256777888999999999988887653332 2222222
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 016027 325 LIH--LLCRMYKFDEASAEFED 344 (396)
Q Consensus 325 l~~--~~~~~~~~~~a~~~~~~ 344 (396)
.+. .....|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 22356777777766655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.94 E-value=5.8 Score=37.54 Aligned_cols=120 Identities=13% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
....-+..+.+..-++-|+.+-..-.... ..-..+....+.-+.+.|++++|...|-+... -..| ..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~-----d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~-----s~ 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDE-----DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEP-----SE 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCCh-----HH
Confidence 45566777778888888887765332210 11233444555666678888888888776654 2223 23
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 455566677777777788888888766 66666778888888877665544443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.93 E-value=11 Score=40.51 Aligned_cols=62 Identities=11% Similarity=-0.031 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
..+|....+.....|.++.|...+-.+.+.+ -+..+-..+..+...|+-..|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777777888888887777776654 3355666677778888888888888888754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.9 Score=31.85 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=47.9
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
.-...++.+++..++..+....|+ .|...++..+ .++..|+|.+|..+|+++.... |....-..|+..|.....-
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 334556777777777777766444 2223333333 3566777888888877776542 3333444455444444333
Q ss_pred HHHHHHHHHHHHcC
Q 016027 161 DRAIRLVKEMRKEG 174 (396)
Q Consensus 161 ~~a~~~~~~~~~~~ 174 (396)
..-..+-+++.+.+
T Consensus 94 ~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 94 PSWRRYADEVLESG 107 (160)
T ss_pred hHHHHHHHHHHhcC
Confidence 33333344455543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=5.4 Score=36.97 Aligned_cols=278 Identities=15% Similarity=0.100 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHH-----HhcCChhHHHHHHHHHHh-------CCCCCChhHHHHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGW-----FRSKNVKDAERFWLEMRK-------ENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 155 (396)
...|.++++..... + +......+..++ ....+++.|+.+|+.+.. .| .......+..+|.
T Consensus 228 ~~~a~~~~~~~a~~--g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhh--c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 46788888888776 3 444444444333 345789999999998876 44 4446677777777
Q ss_pred ccC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--hc
Q 016027 156 RLR-----RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE-AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC--KA 227 (396)
Q Consensus 156 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 227 (396)
+.. +.+.|..++....+.| .|+.......+..... ..+...|.++|...-..|.. ....+..++.... ..
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 743 6677999999998887 4455444333322222 24678999999999887763 3222222222111 23
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-H---HHh----cCC
Q 016027 228 GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK-I---LCK----EDK 299 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~---~~~----~~~ 299 (396)
.+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.+.. ...+-...+. . ... ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 46889999999999887 3332222222333333 7777777777666665533 2222111111 1 111 225
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCch
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM----YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----RGMTA 371 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 371 (396)
.+.+...+.+....| +......+...|... .+++.|...+......+ ....-.+...+.+ .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 566777777776655 556666666665443 35788888888777654 2233233322221 22 57
Q ss_pred HHHHHHHHHhccchh
Q 016027 372 LAQKLCNVMSSVPRS 386 (396)
Q Consensus 372 ~A~~~~~~~~~~~~~ 386 (396)
.|.+++++..+....
T Consensus 527 ~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 527 LAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhcCch
Confidence 888888887665443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=4.3 Score=35.71 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=89.4
Q ss_pred hhhccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
....|++-.|-+-++++++... .|+ -...........|+++.+.+.+.-+... +.....+...+++...
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~-----~i~l~~~i~~~lg~ye~~~~~~s~~~~~-----~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV-----LIQLRSVIFSHLGYYEQAYQDISDVEKI-----IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch-----hhHHHHHHHHHhhhHHHHHHHhhchhhh-----hcCCchHHHHHHHhhh
Confidence 3457888888888888887543 333 3344455678899999999998877664 3555667888999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT 141 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (396)
+.|++++|...-..|....- .+...........-..|-++++...|+++...+.+
T Consensus 369 ~l~r~~~a~s~a~~~l~~ei---e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEI---EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred chhhHHHHHHHHHHHhcccc---CChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999999988876421 24444444444555667889999999988765433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.29 Score=32.16 Aligned_cols=49 Identities=8% Similarity=-0.136 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+.-++.+-++.+.....-|++.+..+.+++|-+.+++..|.++|+-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555555555556666666666666666666666666665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.15 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
++..++.++.+.|++++|.+.|+++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556666667777777777777766664
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.68 E-value=4 Score=34.76 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=67.7
Q ss_pred HHHHhCCCCCCCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 18 LLDKIGGHEVPDFVSKDTFVILIRRYARAGM------------VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 18 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
|.+.++. .|. +..+|..++..--..-. .+.-+.+++++.+.+ |.+......++..+.+.
T Consensus 8 l~~~v~~--~P~--di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-----p~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 8 LNRRVRE--NPH--DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-----PDSERLLLGYLEEGEKV 78 (321)
T ss_pred HHHHHHh--Ccc--cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHh
Confidence 3455553 454 47788888864333322 455667777777764 67777777777777777
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh---cCChhHHHHHHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR---SKNVKDAERFWLEMR 136 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 136 (396)
.+.++..+-++++...+++ +...|...+..... .-.+.....+|.+.+
T Consensus 79 ~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 7777777778887776554 66677766665544 224555555555443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.6 Score=33.30 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=38.0
Q ss_pred HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC
Q 016027 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK 123 (396)
Q Consensus 44 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (396)
....+++.|+..|.+++... |..+.-|..-+.++.+..+++.+..--.++.+..++ .+....-+..+.....
T Consensus 21 f~~k~y~~ai~~y~raI~~n-----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICIN-----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYFLGQWLLQSK 92 (284)
T ss_pred cchhhhchHHHHHHHHHhcC-----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHHHHHHHHhhc
Confidence 33444455555555554442 333344444445555555555555444444444322 2223333444444445
Q ss_pred ChhHHHHHHHHH
Q 016027 124 NVKDAERFWLEM 135 (396)
Q Consensus 124 ~~~~a~~~~~~~ 135 (396)
.+++|+..+.+.
T Consensus 93 ~~~eaI~~Lqra 104 (284)
T KOG4642|consen 93 GYDEAIKVLQRA 104 (284)
T ss_pred cccHHHHHHHHH
Confidence 555555544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.2 Score=25.64 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
|..++..|...|++++|.+.|++..+.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444555555555555555544443
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.24 Score=25.38 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
.+|..++..+...|++++|...|+++.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 478899999999999999999999998874
|
... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.38 E-value=6.6 Score=36.41 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH-----HHcCChHHHHHHHHHHhh-------ccCCCCCChHHHHHHH
Q 016027 49 VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL-----CKQGRVKAASEYFHKRKE-------LDQSWAPTVRVYNILL 116 (396)
Q Consensus 49 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~ 116 (396)
...|.++++.+-+.+ +......++.+| ....+.+.|..+|..+.. . + .......+.
T Consensus 228 ~~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~--~---~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK--G---LPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh--c---CCccccHHH
Confidence 467888888887764 222333333333 345789999999998866 2 2 333566777
Q ss_pred HHHHhcC-----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016027 117 NGWFRSK-----NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR-LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLV 190 (396)
Q Consensus 117 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (396)
.+|.+.. +.+.|..+|.+.-..|.+ +...+...+..... ..+...|.++|....+.|.. ..+-.+..+|.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 7777743 667799999998887633 55444333333322 24678999999999999842 22222332222
Q ss_pred ----HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----hc-
Q 016027 191 ----EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYF----SK- 261 (396)
Q Consensus 191 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~- 261 (396)
...+.+.|..++++.-+.|. |....-...+..+.. +.++.+...+..+.+.+.. ...+-...+..- ..
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFS 448 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccc
Confidence 23478899999999998873 332222333334444 7788887777777776543 222222222111 11
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----
Q 016027 262 ---FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE----DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC---- 330 (396)
Q Consensus 262 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 330 (396)
..+...+...+......| +......+...|..- .+++.+...+......+ ....-.+...+-
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcC
Confidence 224556666666665554 344444455444332 35777777777776654 222222332221
Q ss_pred hcCChhHHHHHHHHHHHCC
Q 016027 331 RMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~ 349 (396)
... +..|.+.++...+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cch-hHHHHHHHHHHHhcC
Confidence 123 677777777776643
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.5 Score=33.39 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=78.8
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHHccC
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVV-TYGTLVEGYCRLR 158 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 158 (396)
.-|....++..|+..|.+++..+|. .+..|..-+.++.+..+++.+..--...++. .||.. ....+........
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhc
Confidence 3444556788888888888776432 2355677777888888888888777776664 45544 3444556666777
Q ss_pred CHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKE----GIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
.+++|+..+.+..+. .+++.......|..+-...-...+..++.+..
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888888877442 34555566666666555555555566655554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.30 E-value=7.4 Score=36.69 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=180.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCC-CCChhHHHHH-HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPD-FVSKDTFVIL-IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLD 80 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (396)
..+.+.+... |...+++.++...... ......+..+ +..+...+++..|++.++.+....... ..+...++..++.
T Consensus 108 ~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 108 RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GDPAVFVLASLSE 185 (608)
T ss_pred HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHH
Confidence 4455554444 8888888876433211 0001222233 223333489999999999888864221 2344445555555
Q ss_pred HHH--HcCChHHHHHHHHHHhhccCC-------CCCChHHHHHHHHHH--HhcCChhHHHHHHHHHHh---CC-CC----
Q 016027 81 SLC--KQGRVKAASEYFHKRKELDQS-------WAPTVRVYNILLNGW--FRSKNVKDAERFWLEMRK---EN-VT---- 141 (396)
Q Consensus 81 ~~~--~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~---~~-~~---- 141 (396)
+.. ..+..+++.+..+.+.....+ ..|-..+|..++..+ ...|+++.+...++++.+ .. -.
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~ 265 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWP 265 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 544 345567777777766332111 234566677766654 456776676666555432 10 00
Q ss_pred ----------------------CChhHH---------HHHHH--HHHccCCHHHHHHHHH-------HHH-HcCCCCC--
Q 016027 142 ----------------------PNVVTY---------GTLVE--GYCRLRRVDRAIRLVK-------EMR-KEGIEPN-- 178 (396)
Q Consensus 142 ----------------------~~~~~~---------~~l~~--~~~~~~~~~~a~~~~~-------~~~-~~~~~~~-- 178 (396)
+....| .-++. ..+..+..++|.++++ ... .....+.
T Consensus 266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence 111111 11111 1223333335544444 444 1111111
Q ss_pred H------HHHHHHH---------HHHHHcCCHHHHHHHHHHHHhcCCC-Cc-------hhhHHHHHHHHHhcCChHHHHH
Q 016027 179 A------IVYNTVI---------DGLVEAGRFEEVSGMMERFLVCEPG-PT-------MVTYTSLVKGYCKAGDLEGASK 235 (396)
Q Consensus 179 ~------~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~ 235 (396)
. ..+...+ -...-.+++..|...++.+...... |+ +..+....-.+...|+.+.|..
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 1111111 1224468899999998888764211 11 2222333334456799999999
Q ss_pred HHH--------HHHHCCCCCChhhHHHH--HHHHh--ccCCHHH--HHHHHHHHHHC-CCCC--ChhhHHHHH-HHHHhc
Q 016027 236 ILK--------MMISRGFLPSPTTYNYF--FRYFS--KFGKVED--AMNLYRKMIES-GYTP--DRLTYHILL-KILCKE 297 (396)
Q Consensus 236 ~~~--------~~~~~~~~~~~~~~~~l--~~~~~--~~~~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l~-~~~~~~ 297 (396)
.|. .....+...+..++..+ +..+. ......+ ...+++.+... .-.| +..++..++ .++...
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 997 44444444344333332 11122 2222233 66666665442 1122 223333333 232221
Q ss_pred C--CHHHHHHHHHHHHHc-----CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC--CHHHHHH-----HH
Q 016027 298 D--KLDLAIQVSKEMKCR-----GC-DIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR-GLVP--HYLTFKR-----LN 361 (396)
Q Consensus 298 ~--~~~~a~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p--~~~~~~~-----l~ 361 (396)
. ...++...+.+..+. +. ..-..+++.+...+. .|+..+..+........ .-.| ....|.. +.
T Consensus 506 ~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~ 584 (608)
T PF10345_consen 506 EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLA 584 (608)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 1 122444444433221 11 111223343444444 67777766655544331 1112 3345533 33
Q ss_pred HHHHHcCCchHHHHHHHHHhc
Q 016027 362 DEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+...|+.++|.....+..+
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 346788999999998887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.25 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
.+++.++..|...|++++|..+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46667777777777777777777766654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.15 E-value=14 Score=39.63 Aligned_cols=323 Identities=9% Similarity=0.014 Sum_probs=168.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.++.+-.+.+.+.+|+..+++-..... ........+..+...|...++++...-+...... .|+ .+. -+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek--~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s--l~~-qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK--EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS--LYQ-QIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc--HHH-HHH
Confidence 667777889999999999988421110 0122334455566689999999988777764222 122 333 333
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNT-VIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 196 (396)
.....|++..|...|+.+.+.+. +...+++.++......|.++..+-..+-..... .+....++. -+.+--+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 45668999999999999988752 246678878877777888888777655554432 233333333 234445677777
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHH--HHHHHhc--CChHHHHHHHHHHHHCCCC---------CChhhHHHHHHHHhccC
Q 016027 197 EVSGMMERFLVCEPGPTMVTYTSL--VKGYCKA--GDLEGASKILKMMISRGFL---------PSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~ 263 (396)
....... . .+..+|... +....+. .|.-.-.+.++-+.+.-+. .-...|..++....-..
T Consensus 1536 ~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7666555 1 122233322 2222222 1211111222222221000 01123333333322111
Q ss_pred CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCC-----CChhhHHHHHHHHHhcCChh
Q 016027 264 KVEDAMNLYRKMIE-SGYTPDRLTYHILLKILCKEDKLDLAIQVSKE-MKCRGCD-----IDLDTSTMLIHLLCRMYKFD 336 (396)
Q Consensus 264 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 336 (396)
-..... .+..... .....+...|..-+..-....+..+-+--+++ +...... --..+|-...+.....|.++
T Consensus 1609 l~~~~~-~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 LENSIE-ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHH-HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 111111 1100000 00111111222222211111111221111111 1111111 13467778888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 337 EASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 337 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.|...+-...+.+ .| ..+...+...++.|+...|+.++++..+.
T Consensus 1688 ~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9998887777655 33 35667778889999999999999996643
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.8 Score=31.36 Aligned_cols=133 Identities=16% Similarity=0.234 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
++++.+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+. +.+..+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4445555566666666666666666666665544433332 23334333332222221 2233344443333332
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 245 FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0013445555666666666666666554221 11122334455555555444444444333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.93 E-value=3.1 Score=37.69 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=48.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4555555555543322 344566666666666666666666654332 2334444555555554444
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 016027 306 VSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFE 343 (396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 343 (396)
+-....+.|.. |....+|...|++++..+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444433321 222233455566666665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=8.6 Score=36.32 Aligned_cols=99 Identities=7% Similarity=-0.043 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhH
Q 016027 48 MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKD 127 (396)
Q Consensus 48 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 127 (396)
.+++...++++-.. .|.....-......+.+.+++......+. ..+.+.......+.+....|+.++
T Consensus 81 ~~~ev~~Fl~~~~~------~P~~~~Lr~~~l~~La~~~~w~~~~~~~~-------~~p~~~~~~c~~~~A~~~~G~~~~ 147 (644)
T PRK11619 81 PAVQVTNFIRANPT------LPPARSLQSRFVNELARREDWRGLLAFSP-------EKPKPVEARCNYYYAKWATGQQQE 147 (644)
T ss_pred CHHHHHHHHHHCCC------CchHHHHHHHHHHHHHHccCHHHHHHhcC-------CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45555555443332 25445555556666667777776665221 112355556667777777888777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 128 AERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
|......+-..|.. ....++.++..+.+.|.+
T Consensus 148 A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 148 AWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 77766666555432 455666677666655543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.5 Score=31.45 Aligned_cols=46 Identities=9% Similarity=-0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+..+-+..+.....-|++.+..+.+.+|.+.+++..|.++|+-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.69 E-value=3 Score=32.12 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchhhHHHHHHHHHhcCChHHH
Q 016027 161 DRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC---EPGPTMVTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 233 (396)
+.|.+.|-.+...+.-.++.....+...| ...+.++++.++.+.++. +..+++..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555554444333333333333333 345555566555555443 1134555666666666666665555
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.26 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
+..++.++.+.|++++|.+.|+++....
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4556777777777777877777777653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.48 E-value=6.5 Score=33.92 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP---TMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
...++..++..+.+.|.++.|...+.++...+... .+.+...-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666666666665533111 233334444555556666666666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.15 E-value=6.3 Score=33.02 Aligned_cols=147 Identities=17% Similarity=0.187 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh--cCC----hHHHHHHHHHHHHCCC---CCChhhHHHHHHHHhccCCH
Q 016027 195 FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK--AGD----LEGASKILKMMISRGF---LPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 265 (396)
+++.+.+++.+.+.|...+..+|.+....... ..+ ...|..+++.|.+..+ .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456778888888887776666553333332 222 5578888999988743 2334445555433 33443
Q ss_pred ----HHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 266 ----EDAMNLYRKMIESGYTPDR--LTYHILLKILCKEDK--LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 266 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
+.++.+|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.++++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 4567778888776765433 223333322222222 45778888888888888887777766554433333324
Q ss_pred HHHHHH
Q 016027 338 ASAEFE 343 (396)
Q Consensus 338 a~~~~~ 343 (396)
...-+.
T Consensus 236 ~~~~i~ 241 (297)
T PF13170_consen 236 IVEEIK 241 (297)
T ss_pred HHHHHH
Confidence 433333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.13 E-value=4.3 Score=31.08 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=45.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHH-----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTPNVVTY-----GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+++++|...++..... |....+ ..|.+.....|.+++|+.+++.....+. .......-.+++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4455566666666666655432 111122 2234445555666666666655544321 22223334455666
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 016027 192 AGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~ 209 (396)
.|+-++|+.-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.09 E-value=5.1 Score=36.39 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=105.6
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
.-.|+++.|-.++-.+ | ......++..+..+|-.++|+++ .+|+.- -.....+.
T Consensus 597 vmrrd~~~a~~vLp~I------~----k~~rt~va~Fle~~g~~e~AL~~-------------s~D~d~---rFelal~l 650 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTI------P----KEIRTKVAHFLESQGMKEQALEL-------------STDPDQ---RFELALKL 650 (794)
T ss_pred hhhccccccccccccC------c----hhhhhhHHhHhhhccchHhhhhc-------------CCChhh---hhhhhhhc
Confidence 3457777775432111 1 33566788888889988888765 222221 22344577
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIR 165 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 165 (396)
|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 651 grl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred CcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 99999988876643 567899999999999999999999987653 4567777778888877777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 166 LVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
+-....+.| ..|.. ..+|...|+++++.+++..-
T Consensus 714 la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQG-KNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhc-ccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 777777776 33332 23456689999999888765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=11 Score=35.53 Aligned_cols=142 Identities=10% Similarity=0.020 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 37 VILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 37 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
..-+....+.|++..+.++...+... |..+.+-...+..-.....+++....+++ .++.+.....-...+
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l~d~------pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~----~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTLKDY------PLYPYLEYRQLTQDLMNQPAVQVTNFIRA----NPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccCC------CcHhHHHHHHHHhccccCCHHHHHHHHHH----CCCCchHHHHHHHHH
Confidence 34445567888888887777766432 33222211111111122345555444444 234333444445566
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 117 NGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
..+.+.+++......+.. .+.+...-...+.+....|+.++|......+-..| ...+.....++..+.+.|.
T Consensus 107 ~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 667778888887773321 23455555677788888899888877777776665 3345566667766665554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.89 E-value=4.2 Score=30.47 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 236 ILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
.+..+.+.+++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444445555555566666666666555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=4.4 Score=33.55 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 016027 176 EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-----GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPT 250 (396)
Q Consensus 176 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 250 (396)
+....+...++..-....+.+.++..+-++....- ..+..++..+ + -.-++++++.++..=+..|+-||..
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccchh
Confidence 33444444444444445556666666555543210 0111222222 1 2234556666666666666666666
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
+++.+++.+.+.+++.+|..+.-.++..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666666666555443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.75 E-value=1.8 Score=38.96 Aligned_cols=126 Identities=16% Similarity=0.061 Sum_probs=71.9
Q ss_pred HHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHH
Q 016027 19 LDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKR 98 (396)
Q Consensus 19 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 98 (396)
+.++.....|- ..+++..+-.+...|+...|..++..+....+.. .+ .....|+..+.+.|-...|..++.+.
T Consensus 596 ~~~~~~~~~p~---w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~---~~-v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 596 FHAINKPNAPI---WLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ---QD-VPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHhcCCCCCe---EEEeecccceeeecCCcHHHHHHHHHHhccChhh---hc-ccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 44555433443 2234444555566777777777777766653211 11 11344666666667777777777766
Q ss_pred hhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..... ....++..+.+++....+.+.|++.|+...+.... +...-+.|...-|
T Consensus 669 l~~~~---sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAINS---SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred Hhhcc---cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 65532 23445666677777777777777777777665433 4445555544433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.1 Score=28.29 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
+-++.+...++.|++.+..+.+++|.+.+++..|+++++.+.
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334444455555555555555555555555554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.53 E-value=8.4 Score=33.22 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP---NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.....+|..++..+.+.|.++.|...+..+...+... .+.+...-+..+-..|+..+|+..++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456688899999999999999999999988754211 4455556677788899999999999888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.50 E-value=3 Score=27.97 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 233 ASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
..+-++.+...+..|++.+..+.+++|.+.+++..|.++++-+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.37 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFE 57 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~ 57 (396)
...++..+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4445555555566655555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.14 E-value=4.6 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=36.7
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..++++++..+++.+.-..|+ .+...++...+ +...|+|.+|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 467888888888888776544 23344444443 567888888888888887764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.69 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.00 E-value=9.6 Score=32.90 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
+.-+...|..+|+++.|++.|.++..--...+..+..|..++....-.|+|........+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34444555555555555555554332111111223334444444444555554444444443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.47 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~ 96 (396)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556666777777777766654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=90.68 E-value=3.5 Score=33.51 Aligned_cols=131 Identities=14% Similarity=0.089 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CCCCc--------hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSG--------ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW 105 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (396)
.+-..+..+.-..+|..|++.-++..+.-... ....+ ......=|++++..|+|.+++.+.-..-+....+
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34455556666788888888888766532110 00111 1122233677788888888888777666554444
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH-----ccCCHHHHHHHH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC-----RLRRVDRAIRLV 167 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 167 (396)
+|.+.-.. |-.|.+.+++..+.++-....+..-.-+...|..++..|. -.|.+++|.++.
T Consensus 117 PpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 PPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45443333 3347788888888888777776532333444666555544 357777777665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=8.3 Score=32.05 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 215 VTYTSLVKGYCKAGDLEGASKILKMMISRG---FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 215 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
.+...++..-....+++.++..+-.++... ..|+. +-...++.+. .-++++++.++..=+..|+-||..+++.++
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 334444444444556666666666665431 11111 1122223222 235556666666666667777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 016027 292 KILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~ 312 (396)
..+.+.+++.+|..+.-.+..
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 777777777776666665554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.5 Score=35.73 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
++......|..+|.+.+|.++.++....+|- +...+..++..+...|+--.+.+-|+.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4566777788888888888888888888764 77778888888888888767766666653
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.4 Score=30.78 Aligned_cols=46 Identities=9% Similarity=-0.075 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+..+.+..+....+-|++.+...-++++-+.+|+..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444444445555566666666666666666666666555544
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=90.41 E-value=8.6 Score=31.38 Aligned_cols=88 Identities=9% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh---
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK--- 226 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 226 (396)
-|.+++..++|.+++...-+..+..-+..+.+...-|-.|.+.+++..+.++-..-+...-+.+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 45666777777776665544433221223344455555577777777777666666554333333446555554443
Q ss_pred --cCChHHHHHHH
Q 016027 227 --AGDLEGASKIL 237 (396)
Q Consensus 227 --~~~~~~a~~~~ 237 (396)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 47777776665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=10 Score=31.48 Aligned_cols=232 Identities=10% Similarity=0.055 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV----DRAIRLVKEMRKEGIEPNAIVYN 183 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 183 (396)
|..+....+..+...|. .++...+..+... +|...-...+.++...|+. .++...+..+... .++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444555544443 2233333333322 2334444444444455542 3455555544333 34444444
Q ss_pred HHHHHHHHcCCH-----HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 184 TVIDGLVEAGRF-----EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 184 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 122222222221 2344455555556655555 3445555554442 244444444445
Q ss_pred HhccC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 259 FSKFG-KVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 259 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
+...+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 44432 12344444544443 23555555556666666653 3444444444321 1 233455666666663 5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 338 ASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
|...+..+.+. .||..+-...+.+|
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666553 23555544444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.11 Score=37.94 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 016027 255 FFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYK 334 (396)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 334 (396)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666666777777777777776554455666777777777776666666665511 11223445566666666
Q ss_pred hhHHHHHHHHH
Q 016027 335 FDEASAEFEDM 345 (396)
Q Consensus 335 ~~~a~~~~~~~ 345 (396)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.22 Score=41.25 Aligned_cols=87 Identities=17% Similarity=0.033 Sum_probs=37.1
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|.++.|++.|..++..+|+ ....|..-.+.+.+.+++..|++=++..++.+.. +..-|-.--.+....|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 34455555555555444322 3444444444455555555555544444443211 1112222222233344555555
Q ss_pred HHHHHHHHcCC
Q 016027 165 RLVKEMRKEGI 175 (396)
Q Consensus 165 ~~~~~~~~~~~ 175 (396)
..+....+.++
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 55555544443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.73 Score=29.08 Aligned_cols=48 Identities=10% Similarity=-0.074 Sum_probs=22.6
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWT 55 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 55 (396)
...+-++|+..+..+++....|.. -..++..++++|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554332221 123444555555555555554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.60 E-value=12 Score=31.88 Aligned_cols=99 Identities=8% Similarity=-0.010 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHHcCC------------hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 69 DSGASLFEILLDSLCKQGR------------VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
|.|..+|..++..--..-. .+.-+.+++++.+.+|+ +...+...+..+.+..+.++..+.++++.
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---SERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777777665433321 34556677777766443 66667777777777777777777777777
Q ss_pred hCCCCCChhHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 016027 137 KENVTPNVVTYGTLVEGYCR---LRRVDRAIRLVKEMR 171 (396)
Q Consensus 137 ~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 171 (396)
..... +...|...+..... .-.++....+|.+.+
T Consensus 93 ~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 93 FKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 66322 56666666655443 123445555554443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.78 Score=39.99 Aligned_cols=104 Identities=20% Similarity=0.054 Sum_probs=75.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.+.|+.|+.++.++++. .|+. ...|..=..++.+.+++..|+.-+.++++.. |.....|..-+.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnc--a~~~anRa~a~lK~e~~~~Al~Da~kaie~d-----P~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNC--AIYFANRALAHLKVESFGGALHDALKAIELD-----PTYIKAYVRRGTAV 82 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcc--eeeechhhhhheeechhhhHHHHHHhhhhcC-----chhhheeeeccHHH
Confidence 4566778889999999998884 5652 2334444577888889999998888888875 66677777777888
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
.+.+.+.+|+..|+..... .|+..-....+.-|
T Consensus 83 m~l~~~~~A~~~l~~~~~l----~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKL----APNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhc----CcCcHHHHHHHHHH
Confidence 8888888888888887765 34544444444433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.94 Score=22.06 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
+..++..+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.99 E-value=4.7 Score=26.97 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=26.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+...|++++|..+.+.. ..||...|..| +-.+.|..+++...+.+|...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhC
Confidence 355566666666655443 25666655544 234556655555555555443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.77 E-value=5.3 Score=31.25 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=56.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHH
Q 016027 251 TYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC--DIDLDTSTMLIHL 328 (396)
Q Consensus 251 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 328 (396)
|.+..++.+.+.+...+++...++-.+.+ +.|..+-..+++.++-.|++++|..-++-.-.... .+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45556677778889999999988877764 33666777788899999999999988877766532 2344566666654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.52 E-value=11 Score=30.11 Aligned_cols=95 Identities=13% Similarity=-0.041 Sum_probs=58.3
Q ss_pred hhhccCchhHHHHHHHHhC------CCCCCCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC
Q 016027 5 LAKAKEFDSAWCLLLDKIG------GHEVPDFV--------SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS 70 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~------~~~~p~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 70 (396)
+.+.|++.+|..-|.+++. ....|-.+ ....+....+++...|++-++++.-..+.... |.
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-----~~ 262 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-----PG 262 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-----Cc
Confidence 5577888888888877652 11122211 01123344556666677777777776666653 66
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
+..+|..-+.+.+..-+..+|..=|.++...+|.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 6777777777777777777777777777666443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.2 Score=38.98 Aligned_cols=109 Identities=17% Similarity=0.052 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
+..-+..+...+.++.|+.++.++++.+ |.....|..-..++.+.+++..|+.=+.++.+.+|. -...|..-
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld-----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~Y~rr 78 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD-----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKAYVRR 78 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC-----CcceeeechhhhhheeechhhhHHHHHHhhhhcCch---hhheeeec
Confidence 3345666778899999999999999985 556666666778999999999999988888887533 34455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
..++.+.+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5667777888888888887766 467776666665544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.86 Score=25.18 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=14.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHhc
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45566666666666666666554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.25 E-value=11 Score=29.78 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=12.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+.....+.|++++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344444555555555555555544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.3 Score=21.48 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
+|..++..+...|++++|...|+.+.+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 6888999999999999999999988775
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.67 E-value=6.8 Score=30.99 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=16.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHhccchhh
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSSVPRSM 387 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 387 (396)
+.....+.|+.++|.++|.++...+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3344556677777777776665544433
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=87.28 E-value=3.4 Score=27.53 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=33.4
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFV-----SKDTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
.+.|++.+|.+.+.+........... -..+...++......|++++|.+.++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888865554444322111100 0234556667777778888888888777765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=14 Score=30.43 Aligned_cols=76 Identities=8% Similarity=-0.097 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN-VTPNVVTYGTLVEG 153 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 153 (396)
...+-.+|.+.++++.|+.+.+.+....|+ +..-+..-...|.+.|.+..|..=++..++.- -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 344556666777777777777777666544 44455555666677777777777666665442 23344444444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.8 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 016027 325 LIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 325 l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.70 E-value=16 Score=29.76 Aligned_cols=213 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHHh
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV---IDGLVEAGRFEEVSGMMERFLVC-----EPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 226 (396)
.+..++++|+.-|++.++..-....+-|.++ +....+.|++++....|.+++.. ...-+..+.+.++...+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----------hhhHHHH
Q 016027 227 AGDLEGASKILKMMISR-----GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD-----------RLTYHIL 290 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l 290 (396)
..+.+.....++.-... +-..--.|-..+...|...+.+.+..++++++..+--.-+ ...|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----hcCChhHHHHHHHHHHH----CCCCCCHHH---HH
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC-----RMYKFDEASAEFEDMIR----RGLVPHYLT---FK 358 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~----~~~~p~~~~---~~ 358 (396)
++.|....+-.....++++...............+|+-|. +.|.+++|..-|-+..+ .| .|-..+ |.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Q ss_pred HHHHHHHHcC
Q 016027 359 RLNDEFKKRG 368 (396)
Q Consensus 359 ~l~~~~~~~g 368 (396)
.+...+.++|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.46 E-value=0.33 Score=35.50 Aligned_cols=128 Identities=11% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 016027 220 LVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDK 299 (396)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (396)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. . +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~---~----~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT---S----NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS---S----SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc---c----cccCHHHHHHHHHhcch
Confidence 4556666777777777888887665555677778888888888776777766651 1 11223445666677777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
++++..++.++-...-. +..+...++++.|.+.+.+ .++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 77777666554322110 1112333445555432221 2345566666666655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13934 ELYS: Nuclear pore complex assembly | Back alignment and domain information |
|---|
Probab=86.02 E-value=8.3 Score=30.82 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+..++++++|...+-+--- .|+ -...+++++...|+.+.|+.+++..... ..+......+... ..
T Consensus 88 ~LD~~~~~~A~~~L~~ps~---~~~-----~~~~Il~~L~~~~~~~lAL~y~~~~~p~------l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPSL---IPW-----FPDKILQALLRRGDPKLALRYLRAVGPP------LSSPEALTLYFVA-LA 152 (226)
T ss_pred HhChHhHHHHHHHhCCCCC---Ccc-----cHHHHHHHHHHCCChhHHHHHHHhcCCC------CCCHHHHHHHHHH-HH
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH----hcCChhHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF----RSKNVKDAERF 131 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~ 131 (396)
++.+.+|..+-+......+ ...+..++..+. +.+..++...+
T Consensus 153 ~~~v~EAf~~~R~~~~~~~-----~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELR-----RRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred cCCHHHHHHHHHhCchhhh-----HHHHHHHHHHHHHHhhhhhHHHHHHhC
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.93 E-value=12 Score=30.62 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=72.8
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFV----SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEI 77 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (396)
++-..+..++++|+..|.+++..+...+.- -..+...+...|...|+...-.+.............-|....+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 455677889999999999999876533311 1346778899999999988766666554443221122333333344
Q ss_pred HHHHHHHc-CChHHHHHHHHHHhhccCCCCCCh-----HHHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 78 LLDSLCKQ-GRVKAASEYFHKRKELDQSWAPTV-----RVYNILLNGWFRSKNVKDAERFWLEM 135 (396)
Q Consensus 78 l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~ 135 (396)
|+..+-.. ..++.-+++.....+. ..+.+. ..-..++..+.+.|++.+|+.+...+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iew--A~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEW--ADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44433222 2344444444433322 000011 11234566677777777777655433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.92 E-value=16 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=14.3
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 016027 42 RYARAGMVEAAIWTFEFANN 61 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~ 61 (396)
.+.-.+++++|.++|.++-.
T Consensus 23 lfgg~~k~eeAadl~~~Aan 42 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAAN 42 (288)
T ss_pred ccCCCcchHHHHHHHHHHHH
Confidence 44556688888888886654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.88 E-value=0.53 Score=39.10 Aligned_cols=122 Identities=16% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+.-....|.+++|++.|..++..+ |+...+|..-.+++.+.+++..|++=+..+.+.++. +..-|-.-..+.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~ln-----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---sa~~ykfrg~A~ 192 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELN-----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---SAKGYKFRGYAE 192 (377)
T ss_pred HHHHhcCcchhhhhcccccccccC-----CchhhhcccccceeeeccCCchhhhhhhhhhccCcc---cccccchhhHHH
Confidence 334457888999999999998885 778888888889999999999999988888877544 333344444445
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
.-.|+|++|.+.+....+.+..+....+.. ...-..+..++-...+++..
T Consensus 193 rllg~~e~aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHhhchHHHHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHH
Confidence 557899999999999988876665554432 23333344444334444433
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.94 E-value=4.1 Score=25.86 Aligned_cols=48 Identities=6% Similarity=0.006 Sum_probs=28.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHH
Q 016027 331 RMYKFDEASAEFEDMIRRGLVPH--YLTFKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
...+.++|+..|...++.-..|. ..++..++.+|+..|++++++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666432221 1345566677777777777666543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.79 E-value=12 Score=26.78 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 318 DLDTSTMLIHLLCRMYK---FDEASAEFEDMIRRGLVPH--YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+..+-..+.+++.++.+ ..+.+.+++++.+.. .|+ ......|.-++.+.|++++++++.+.+.+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 44444455555555443 334445555555421 121 12223344455566666666666666544443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.41 E-value=5.7 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLD 63 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 63 (396)
++.++-++.+.|++++|.+..+.+.+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4455666667777777777777766653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.38 E-value=31 Score=31.11 Aligned_cols=179 Identities=9% Similarity=0.059 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 107 PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
.|.....+++..+..+..+.-+..+..+|..-| .+...+..++.+|... ..+.-..+++++.+..+ .|...-..+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 455566777888888888888888888888764 4677888888888877 55777788888877743 2333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHh
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCEPGP-----TMVTYTSLVKGYCKAGDLEGASKILKMMISR-GFLPSPTTYNYFFRYFS 260 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 260 (396)
..|-+ ++.+.+..+|.++...-++. -...|..+...- ..+.+....+...+... |..--...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 77788888888776653321 123455444322 34566666666666543 33333445555556777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 261 KFGKVEDAMNLYRKMIESGYTPDRLTYHILLKI 293 (396)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (396)
...++.+|++++..+.+.+- -|...-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 88888888888888777642 244444444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.26 E-value=11 Score=33.45 Aligned_cols=148 Identities=15% Similarity=0.005 Sum_probs=87.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC----chhHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS----GASLFEILL 79 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 79 (396)
.|.+..++.-+..-...++... .+ +..+...-.+.+.-.|++.+|.+++...--.....+... .-..++.++
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a--~~--s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIA--QD--SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhc--CC--CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 3444445555544444443321 12 233455556667788999999888775543221111111 223357777
Q ss_pred HHHHHcCChHHHHHHHHHHhh-----ccCCCCCCh-----------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 80 DSLCKQGRVKAASEYFHKRKE-----LDQSWAPTV-----------RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
-.+.+.|.+..+..+|.++.+ ...+++|.. .+|| ..-.+...|++-.|.+.|.+..+. +..+
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~n 368 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRN 368 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcC
Confidence 777778888888888877664 112333321 2233 334567789999999999887765 4558
Q ss_pred hhHHHHHHHHHHcc
Q 016027 144 VVTYGTLVEGYCRL 157 (396)
Q Consensus 144 ~~~~~~l~~~~~~~ 157 (396)
+..|..|..+|...
T Consensus 369 PrlWLRlAEcCima 382 (696)
T KOG2471|consen 369 PRLWLRLAECCIMA 382 (696)
T ss_pred cHHHHHHHHHHHHH
Confidence 88898888888643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.95 E-value=12 Score=34.17 Aligned_cols=106 Identities=10% Similarity=-0.031 Sum_probs=60.0
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
+|+.-+|+..+...+.- .|+..-..+...++..+-+.|...+|--++..+..... .-..-+..+.++++..++
T Consensus 226 ~G~~~~A~~Ca~~a~hf--~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~-----~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHF--SSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD-----FFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred cCChhhhhHHHHHHhhh--CCcccccchhhhHHHHHHHcccccchhheeehhccCCc-----cccccceeHHHHHHHHhh
Confidence 56666666655555432 22222233555666666666666666655554444321 111115556677777777
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
+......|+...+.+|+..|....-...|++..
T Consensus 299 ~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~ 331 (886)
T KOG4507|consen 299 YNHSVLCYDHALQARPGFEQAIKQRKHAISCQQ 331 (886)
T ss_pred hhhhhhhhhhhhccCcchhHHHHHHHHHHHHHH
Confidence 777777777777776666666655555555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.10 E-value=44 Score=31.87 Aligned_cols=153 Identities=10% Similarity=0.105 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+.-+.+.+.+++|+++-+........ .....+...++..+.-.|++++|-...-+|... +..-|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~---~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn------~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER---FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN------NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc---cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc------hHHHHHHHHHHh
Confidence 55677788888888887765554210 013456777888888888888888888777653 566677777666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------H---HcCCCCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM--------------R---KEGIEPNAIVY 182 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~---~~~~~~~~~~~ 182 (396)
...++......+ +.......+...|..++-.+.. .+...-.++.... . +.. ..+...-
T Consensus 434 ~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~ 508 (846)
T KOG2066|consen 434 AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALL 508 (846)
T ss_pred ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHH
Confidence 666665443332 2222222345566666655554 2222222111111 0 000 1122333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
..|+..|...++++.|+.++-.+.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 457778888888888888877664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.75 E-value=36 Score=30.60 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=75.5
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHH-CCCCCCHHH
Q 016027 281 TPDRLTY-HILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR--MYKFDEASAEFEDMIR-RGLVPHYLT 356 (396)
Q Consensus 281 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~p~~~~ 356 (396)
.|+..++ +.++..+.+.|..++|..++..+... ++|+...|..++..-.. .-+...+.++++.|.. .| -|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4555444 45677788889999999999999876 46688888888764322 2237888999999876 66 57778
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH-Hhccchh
Q 016027 357 FKRLNDEFKKRGMTALAQKLCNV-MSSVPRS 386 (396)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~ 386 (396)
|...+.--...|..+.+-.++.+ |....++
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 88888777789999988777766 4444433
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=82.71 E-value=11 Score=30.62 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRK----EN-VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
....++.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344566667777777777777776632 12 3344555666667777777777666655444
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.14 E-value=28 Score=28.99 Aligned_cols=235 Identities=9% Similarity=-0.055 Sum_probs=143.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCh
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV----KDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 144 (396)
.++..+....+..+...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS-----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 4455666667777777775 3344444444332 3566666667777777763 4677777766443 3455
Q ss_pred hHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 016027 145 VTYGTLVEGYCRLRR-----VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTS 219 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (396)
..-...+.++...+. ...+...+..... .++..+-...+.++.+.++ +.++..+-.+... ++..+-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHH
Confidence 555555555555432 1233344433333 3466666677788888776 4566766666652 45556666
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 220 LVKGYCKAG-DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 220 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+.++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-+..+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 666666653 24567777766664 34777788888888888884 5666666655543 2 2346777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC 330 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (396)
.. +|...+..+.+. .+|..+-...+.++.
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 85 688888888764 346666665555543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=81.85 E-value=9.5 Score=25.37 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=35.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCC----chhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDS----GASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
..+.|++..|++.+.+........+.+. -......++......|++++|.+.++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577888888766666555432222122 1233344566677778888888888776654
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.43 E-value=28 Score=28.77 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=63.9
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC--CCCCChHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ--SWAPTVRVYNI-LLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
|-....+++..++..|++.++.+.+.++.++...... +.+-|+..... +.-.|....-.++.++..+.|.+.|..-+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 4566778899999999999999999888777544332 44444433222 22333334446777788888888864322
Q ss_pred h----hHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 144 V----VTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 144 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
. .+|..+- +....++.+|-.++......
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 1 2333332 22345777777777666543
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.25 E-value=30 Score=29.13 Aligned_cols=134 Identities=15% Similarity=0.072 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCCCCCChH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL--DQSWAPTVR 110 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 110 (396)
...++.+... +..+.++--+..+.+.+.. |-..-.+++.....-|++.|+.+.|.+.+++.... .-|.+.|+.
T Consensus 70 ~~~l~~m~~~--neeki~eld~~iedaeenl---GE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 70 QDLLNSMKKA--NEEKIKELDEKIEDAEENL---GESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 4444444442 2233344444444444432 33555677888999999999999999888775433 225666766
Q ss_pred HHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 111 VYNILLNG-WFRSKNVKDAERFWLEMRKENVTPN----VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 111 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..-+.. |....-..+-++..+.+.+.|..-+ -.+|..+- |....++.+|-.+|-+....
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 65543333 3333334455555555666653322 22444332 33456888888887766543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.97 E-value=51 Score=31.23 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=32.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh---c
Q 016027 222 KGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG-YTPDRLTYHILLKILCK---E 297 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 297 (396)
.++.-.|.++.|++.+-. ......+...+...+..|.-.+-..... ..+.... -.|.+..+..|+..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344456777777777665 1112334444444443332222211111 1111111 01112445566666654 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 016027 298 DKLDLAIQVSKEMKCR 313 (396)
Q Consensus 298 ~~~~~a~~~~~~~~~~ 313 (396)
.+..+|.+++--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4666666666665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.74 E-value=8.8 Score=22.28 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
...+.-++.+.|++++|.+..+.+.+.+|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 455777788888888888888888877544
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.33 E-value=43 Score=31.88 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred HHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC---CCCchhHHHHHHHHHHHcCChHHHHHH
Q 016027 18 LLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN---FDSGASLFEILLDSLCKQGRVKAASEY 94 (396)
Q Consensus 18 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 94 (396)
+.++...-..|+..+.++...++-.|....+++.-+++.+.+.+...-.. .+.-...|...++---+-|+-++|+..
T Consensus 186 L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~ 265 (1226)
T KOG4279|consen 186 LDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNT 265 (1226)
T ss_pred HHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHH
Confidence 34444444478888888999999999999999999999888877531100 011111233333333345788889988
Q ss_pred HHHHhhccCCCCCChHHH-----HHH--HHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 95 FHKRKELDQSWAPTVRVY-----NIL--LNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-----~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
.-.+.+.+....||.... ..+ .+.|...+..+.|.+.|++..+ +.|+..+
T Consensus 266 ~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~s 322 (1226)
T KOG4279|consen 266 VLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYS 322 (1226)
T ss_pred HHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhc
Confidence 888888877778875432 221 1223445667778888887765 3555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.12 E-value=29 Score=27.77 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhc--CCCCch---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 193 GRFEEVSGMMERFLVC--EPGPTM---VTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
.++++|+..|++.-+- |.+.+. ..+.-....-...+++.+|+++|+++....+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555566655554432 111111 12222333445667788888888888766444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 3e-18
Identities = 25/165 (15%), Positives = 61/165 (36%), Gaps = 2/165 (1%)
Query: 78 LLDSLCKQGRVKAASEYFHK-RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMR 136
++ A + + T+ +YN ++ GW R K+ ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 137 KENVTPNVVTYGTLVEGYCRLRRVDRAI-RLVKEMRKEGIEPNAIVYNTVIDGLVEAGRF 195
+TP++++Y ++ R + I R +++M +EG++ A+ ++ A
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 196 EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240
+ V + F + P V + L++ K+ +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 2e-16
Identities = 33/270 (12%), Positives = 82/270 (30%), Gaps = 10/270 (3%)
Query: 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLV---KEMRKEGIEP 177
++ + + + ++ + ++ A L+ R++
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG-DLEGASKI 236
+YN V+ G G F+E+ ++ P +++Y + ++ + D +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 237 LKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296
L+ M G + ++ + P + LL+ +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 297 EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLT 356
+D ++ +K C +H+ S E + + + T
Sbjct: 284 KDGRVSYPKLHLPLKTLQC-----LFEKQLHMELASRVCVV-SVEKPTLPSKEVKHARKT 337
Query: 357 FKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386
K L D+++K AL + + V
Sbjct: 338 LKTLRDQWEKALCRALRETKNRLEREVYEG 367
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 3e-16
Identities = 35/275 (12%), Positives = 86/275 (31%), Gaps = 13/275 (4%)
Query: 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKE---------MRKEGIEP 177
+ ++ +MR + + + E RR+ RL+ + R+ P
Sbjct: 31 EKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESP 90
Query: 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237
++ + + + + K L A +L
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLL 150
Query: 238 ---KMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKIL 294
+ L + YN +++ G ++ + + + ++G TPD L+Y L+ +
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 295 CKEDKLDLAIQ-VSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH 353
++D+ I+ ++M G + + +L+ R +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 354 YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRSME 388
+ +L + + KL + ++ E
Sbjct: 271 PVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 8e-09
Identities = 53/402 (13%), Positives = 117/402 (29%), Gaps = 114/402 (28%)
Query: 11 FDSAWCLLLDKIGG--HEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNF 68
D W D + ++ ++ + Y +V + N F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKAWNAF 262
Query: 69 DSG---------ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119
+ + + L + + S + +LL
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----------LLLK-- 309
Query: 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI---- 175
+L+ R +++ V+T + ++ E ++G+
Sbjct: 310 ------------YLDCRPQDLPREVLTTNPR------------RLSIIAESIRDGLATWD 345
Query: 176 ---EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG---PTMVTYTSLVKGYCKAGD 229
N T+I+ + E M +R V P PT++ SL+ D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSD 403
Query: 230 LEGASKILKMMISRGFL---PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES-----GYT 281
+ ++ + + P +T + Y K+E+ L+R +++ +
Sbjct: 404 VM---VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 282 PDRLT-------------YHILLKILCKEDK--------LDLA-IQVSKEMKCRGCDIDL 319
D L +H LK + ++ LD ++ K R
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDSTAW 514
Query: 320 DTSTMLIHLL--CRMYK--FDEASAEFEDMIRRGLVPHYLTF 357
+ S +++ L + YK + ++E ++ L F
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 4e-07
Identities = 79/526 (15%), Positives = 146/526 (27%), Gaps = 159/526 (30%)
Query: 1 MIKVLAKA--KEFDSAWCLLLDKIGGHEVPDF----VSKDTFVILIRRYARAGMVEAAIW 54
++ V A FD C +V D +SK+ +I W
Sbjct: 21 ILSVFEDAFVDNFD---C--------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 55 TFEFANNLDMVKNF--DSGASLFEILLDSLCKQGRVKAA--SEYFHKRKEL---DQSWAP 107
T +MV+ F + ++ L+ + + R + Y +R L +Q +A
Sbjct: 70 TLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 108 -TV-RV----------------YNILLNG-------WFRSKNVKDAER--------FWLE 134
V R+ N+L++G W + FWL
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 135 MRKENVTPNVVT------YGTLVEGYCRLRRVDRAIRLVKEMRKEGIE--------PNAI 180
++ N +P V + + I+L + + N +
Sbjct: 189 LKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 181 -----VYN-TVIDG-------LV---EAGRFEEVSGMMERFLVCEPGPTMVTYT---SLV 221
V N + L+ + +S + + +T SL+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 222 KGY--CKAGDL-EGASKILKM---MISRGFLPSPTTYNYFFRYFSKFGKVEDAM------ 269
Y C+ DL +I+ T++ + K+ +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNV 365
Query: 270 ---NLYRKMIES-GYTPDRLTYHILLKILC-------KED---------KLDLAIQVSKE 309
YRKM + P HI +L K D K L + KE
Sbjct: 366 LEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 310 MKCRGCDIDLDTSTML-----IH-------LLCRMYKFDEASAEFED----------MIR 347
I L+ L +H + + + D+ + D +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 348 RGLVPHYLTFKR--LNDEFKKRGMTALAQKLCNVMSSVPRSMELLD 391
F+ L+ F L QK+ + ++ S +L+
Sbjct: 484 IEHPERMTLFRMVFLDFRF-------LEQKIRHDSTAWNASGSILN 522
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.82 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.79 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.78 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.76 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.76 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.74 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.74 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.73 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.73 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.72 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.71 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.71 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.71 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.7 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.69 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.63 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.62 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.62 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.62 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.62 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.6 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.55 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.52 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.52 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.51 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.51 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.47 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.47 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.47 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.46 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.45 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.45 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.45 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.44 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.42 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.4 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.38 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.38 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.38 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.38 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.38 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.37 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.34 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.33 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.31 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.31 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.27 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.27 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.26 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.25 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.23 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.21 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.2 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.19 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.18 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.17 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.16 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.14 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.1 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.1 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.09 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.09 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.09 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.09 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.08 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.08 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.08 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.08 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.07 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.06 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.06 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.06 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.04 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.03 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.01 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.01 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.98 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.98 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.98 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.97 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.96 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.95 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.95 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.94 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.88 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.88 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.86 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.85 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.82 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.82 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.81 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.81 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.79 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.77 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.77 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.71 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.71 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.66 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.6 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.56 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.5 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.45 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.43 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.37 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.83 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.8 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.64 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.45 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.27 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.23 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.34 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.13 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.07 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 96.0 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.7 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.59 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.58 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.38 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.05 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.04 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.94 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.31 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.29 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.28 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.18 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.08 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.47 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.22 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.15 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.92 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.53 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.21 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.2 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.04 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 88.33 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.51 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.21 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 86.21 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.76 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=278.13 Aligned_cols=273 Identities=9% Similarity=0.039 Sum_probs=160.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVID 187 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (396)
+..+|+.++..+.+.|++++|..+|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 3334444444444444444444444444433221 33444444444444444444444444444332 334556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 188 GLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
+|.+.|++++|.++|+++.+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666665433 245566666666666666666666666666653 2355666666666666667777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCChhHHHHH
Q 016027 268 AMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR----GCDID--LDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777666666553 225666666666667777777777777666654 44455 55666677777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 342 FEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 342 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..+.
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77666644 335666666666777777777777777666554433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=275.57 Aligned_cols=369 Identities=13% Similarity=0.054 Sum_probs=303.8
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----------cccCCCC
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLD-----------MVKNFDS 70 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~ 70 (396)
+..|.+.|++++|..+|..++.. .++ ..++..++.+|.+.|++++|+++|+++.... ...+.+.
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY--NRS---SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG--GTC---HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc--ccc---hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 45566677777777776666542 233 5577777777777777777777777432211 0012244
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH-----------------------------------
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL----------------------------------- 115 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l----------------------------------- 115 (396)
+..+|+.++.+|.+.|++++|.++|+++...+|. +...+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 5788889999999999999999999998876543 33333333
Q ss_pred ---HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 116 ---LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 116 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES 352 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh
Confidence 44555678888899999888765 4789999999999999999999999999999876 55788899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
|++++|..+++++.+..+ .+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|
T Consensus 353 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987654 478899999999999999999999999999864 337889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 016027 273 RKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR---- 348 (396)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 348 (396)
+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..+. ++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999875 347889999999999999999999999999987544 8899999999999999999999999999875
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 349 GLVPH--YLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 349 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+..|+ ..+|..++.+|.+.|++++|.++++++.+..+
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 66777 78999999999999999999999999876544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=246.84 Aligned_cols=366 Identities=13% Similarity=0.060 Sum_probs=325.5
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+.+.|++++|++.+..+++. .|+ +..++..++..+...|++++|...++.+.+.. |.+..++..++..
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHH
Confidence 45678899999999999999874 455 36788899999999999999999999999875 8889999999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+.+.|++++|.+.|+++...+|. +...|..++.++.+.|++++|.+.|+++.+..+. +...+..+...+...|+++
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHH
Confidence 99999999999999999987554 6778999999999999999999999999987533 5667888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+.++. +...+..+...+...|++++|...+.+..
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 153 EAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999874 456788999999999999999999999999997663 67889999999999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
...+ .+..++..+...+...|++++|...|+++.+.+. .+..++..+..++.+.|++++|...++++.+..+ .+..+
T Consensus 231 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 307 (388)
T 1w3b_A 231 SLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADS 307 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred hhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHH
Confidence 8743 3678899999999999999999999999998753 3677899999999999999999999999998753 48899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+..+...+...|++++|...++++++.. +.+..++..+..++.+.|++++|...++++.+..+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999998853 456788999999999999999999999998775443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=229.45 Aligned_cols=348 Identities=16% Similarity=0.112 Sum_probs=307.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+...|++++|...+..+++. .|+ +..+|..++.++.+.|++++|+..|+++.... |.+..++..++.++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ--NPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-----PDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----cchHHHHHHHHHHH
Confidence 4567889999999999998874 444 47799999999999999999999999999875 77888999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.+.|+++...+|. +...+..+...+...|++++|.+.|+++.+..+. +..+|..+...+...|++++
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987654 6678888999999999999999999999887433 67899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|+..|+++.+.+ +.+...+..+..++...|++++|...+++.....+ .+..++..+..++...|++++|...|+++.+
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999875 55678889999999999999999999999998755 3678899999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.++ .++.++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .+..++
T Consensus 266 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 342 (388)
T 1w3b_A 266 LQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAH 342 (388)
T ss_dssp TCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHH
Confidence 753 367889999999999999999999999999875 45788999999999999999999999999998643 368899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
..++.++.+.|++++|...|+++++.. +.+...|..+...+...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999853 3456778788777766653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=238.73 Aligned_cols=186 Identities=15% Similarity=0.230 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC---------HHHHHHHHHHHHHcCCCCCHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR---------VDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
.++.++.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK 261 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 261 (396)
|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 016027 262 FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296 (396)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (396)
.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=237.03 Aligned_cols=207 Identities=18% Similarity=0.203 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 016027 126 KDAERFWLEMRKENVTPNV-VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR---------F 195 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 195 (396)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|.+.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777666554 46888999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 016027 196 EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKM 275 (396)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (396)
+.|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016027 276 IESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM 332 (396)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 332 (396)
.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=221.87 Aligned_cols=369 Identities=11% Similarity=-0.038 Sum_probs=312.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|.+++.. .|+ ..+|..++.++...|++++|+..|+++.+.. |.+..++..++.++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALEL--KED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK-----PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH--CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhc--Ccc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-----hHHHHHHHHHHHHH
Confidence 5678899999999999999985 366 7799999999999999999999999999975 78889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCC--------------------------------------------------------
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWA-------------------------------------------------------- 106 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------------------------------- 106 (396)
...|++++|...|+++...++...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999987653110
Q ss_pred --------------------CChHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCC--------CCChhHHHHH
Q 016027 107 --------------------PTVRVYNILLNGWFR---SKNVKDAERFWLEMRK-----ENV--------TPNVVTYGTL 150 (396)
Q Consensus 107 --------------------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 150 (396)
.+...+......+.. .|++++|...|+++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 013334444444444 8999999999999987 311 1235678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...+...|++++|...++++.+.. |+...+..+..++...|++++|...++++....+ .+..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999885 3388888999999999999999999999998755 3677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEM 310 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (396)
++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999987543 67789999999999999999999999998864 336678889999999999999999999999
Q ss_pred HHcCCC-CC----hhhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 311 KCRGCD-ID----LDTSTMLIHLLCR---MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 311 ~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
.+..+. ++ ...+..+...+.. .|++++|...++++++.. +.+..++..+..++.+.|++++|...+++..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 875332 11 3388999999999 999999999999999864 44678889999999999999999999999777
Q ss_pred cchhh
Q 016027 383 VPRSM 387 (396)
Q Consensus 383 ~~~~~ 387 (396)
..+..
T Consensus 478 ~~~~~ 482 (514)
T 2gw1_A 478 LARTM 482 (514)
T ss_dssp HCSSH
T ss_pred hcccc
Confidence 65443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=208.89 Aligned_cols=348 Identities=13% Similarity=0.050 Sum_probs=281.3
Q ss_pred hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHH
Q 016027 13 SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAAS 92 (396)
Q Consensus 13 ~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 92 (396)
.+...+.+.+.. .|+ +..++..++..+.+.|++++|+.+|+++.... |.++.++..++.++...|++++|.
T Consensus 10 ~~~~~~~~~~~~--~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 10 GVDLGTENLYFQ--SMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp ---------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccccc--cHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHCCCHHHHH
Confidence 344455566653 344 46799999999999999999999999999874 778999999999999999999999
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh---hHHHHH------------HHHHHcc
Q 016027 93 EYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV---VTYGTL------------VEGYCRL 157 (396)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~ 157 (396)
..|+++.+.+|. +..++..++.++.+.|++++|...|+++.+..+. +. ..+..+ ...+...
T Consensus 81 ~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 81 PDLTKVIQLKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999987654 6889999999999999999999999999986432 34 555555 4458899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 158 RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
|++++|+..++.+.+.. +.+..++..++.++...|++++|+..|+++.+..+ .+..++..++.+|...|++++|...|
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999874 56788899999999999999999999999988755 47889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHH------------HHHHhccCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHH
Q 016027 238 KMMISRGFLPSPTTYNYF------------FRYFSKFGKVEDAMNLYRKMIESGYTPD----RLTYHILLKILCKEDKLD 301 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 301 (396)
+.+...... +...+..+ +..+...|++++|...|+++.+.... + ...+..++.++.+.|+++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 999976422 44555444 78899999999999999999886422 2 347888899999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHHcC-
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDE------------FKKRG- 368 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g- 368 (396)
+|...++++.+..+. +..++..++.+|...|++++|...++++++.. +.+...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999999887533 78999999999999999999999999999853 3345566666533 33344
Q ss_pred ----CchHHHHHHHH
Q 016027 369 ----MTALAQKLCNV 379 (396)
Q Consensus 369 ----~~~~A~~~~~~ 379 (396)
+.+++.+.+++
T Consensus 391 ~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRK 405 (450)
T ss_dssp STTCCTTHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 56677888886
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-27 Score=208.51 Aligned_cols=355 Identities=14% Similarity=0.066 Sum_probs=288.7
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+.+.|++++|+..|.++++. .|+ +..+|..++.++...|++++|+..|+++.+.. |.+..++..++.+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~--~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDG--DPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-----MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCcHHHHHHHHHH
Confidence 45788999999999999999874 444 37799999999999999999999999999975 7788999999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCCh---HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCChhH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTV---RVYNIL------------LNGWFRSKNVKDAERFWLEMRKENVTPNVVT 146 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (396)
|...|++++|.+.|+++...+|. +. ..+..+ ...+...|++++|+..|+++.+... .+..+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS---ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 99999999999999999986443 33 555555 4458899999999999999988743 47889
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH------
Q 016027 147 YGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL------ 220 (396)
Q Consensus 147 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 220 (396)
+..++.++...|++++|++.++++.+.. +.+..++..++.++...|++++|+..|+++....+. +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 567889999999999999999999999999986553 44455444
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 221 ------VKGYCKAGDLEGASKILKMMISRGFLPS----PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 221 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
+..+...|++++|...|+.+.+.... + ...+..+..++.+.|++++|...++++.+.. +.+...+..+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78999999999999999999986422 2 3478888999999999999999999998864 3367899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHHCC--C
Q 016027 291 LKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHL------------LCRMY-----KFDEASAEFED-MIRRG--L 350 (396)
Q Consensus 291 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~--~ 350 (396)
+.+|...|++++|...++++.+..+. +...+..+..+ |...| +.+++.+.+++ .++.. .
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999987543 56666666633 33344 56677888886 34321 1
Q ss_pred CCCH-------HHHHHHHHHHHHcCCchHHH
Q 016027 351 VPHY-------LTFKRLNDEFKKRGMTALAQ 374 (396)
Q Consensus 351 ~p~~-------~~~~~l~~~~~~~g~~~~A~ 374 (396)
.|+. ..+..+..+|...|+.+++.
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1222 25667777777777766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=208.26 Aligned_cols=367 Identities=13% Similarity=0.027 Sum_probs=294.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|.+++.. .|+ +..+|..++.++...|++++|++.|+++.... |.++.++..++.++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIEL--DPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-----PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHHH
Confidence 5678899999999999999985 454 47899999999999999999999999999985 88899999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCC-----------------------------------ChH-----------------
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAP-----------------------------------TVR----------------- 110 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~-----------------------------------~~~----------------- 110 (396)
...|++++|.+.|+ ....+|.... +..
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999996 3333222111 000
Q ss_pred -------------HHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC-------hhHHHHHHHHHHccCCHHH
Q 016027 111 -------------VYNILLNGWFR--------SKNVKDAERFWLEMRKENVTPN-------VVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 111 -------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~ 162 (396)
....+...+.. .+++++|..+|+++.+..+. + ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11112111111 24789999999999876433 3 2356777788889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|...++.+.+. .|+...+..+...+...|++++|...++++.+..+ .+..++..+..++...|++++|...++++.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999987 45588888999999999999999999999998765 3678899999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----C
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-----I 317 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 317 (396)
.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. .
T Consensus 339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 7533 67789999999999999999999999998875 336778889999999999999999999998765321 1
Q ss_pred ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 318 DLDTSTMLIHLLCRM----------YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
....+.....++... |++++|...|+++++.. +.+...+..+..++.+.|++++|.+.+++..+..+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 222344556777777 99999999999999864 456788999999999999999999999997776544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-26 Score=203.79 Aligned_cols=340 Identities=12% Similarity=-0.004 Sum_probs=287.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++++|+..|+++.... |++.++..++.++...|++++|.+.++++.+.+|. +..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHH
Confidence 4578999999999999999999999999973 57899999999999999999999999999987654 77899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC--------------------------------------------------
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTP-------------------------------------------------- 142 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------- 142 (396)
..++.++.+.|++++|...|+++...+...
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 999999999999999999999998764311
Q ss_pred ----------------------------ChhHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCC
Q 016027 143 ----------------------------NVVTYGTLVEGYCR---LRRVDRAIRLVKEMRK-----EGI--------EPN 178 (396)
Q Consensus 143 ----------------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~ 178 (396)
+...+......+.. .|++++|+.+++++.+ ... +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 12233333333443 8999999999999988 311 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
..++..+..++...|++++|...++++.+..+. ...+..+..++...|++++|...++.+.+... .+..++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHH
Confidence 567788889999999999999999999987665 88899999999999999999999999998753 377889999999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEA 338 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 338 (396)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999987533 6778888999999999999999999999987543 678899999999999999999
Q ss_pred HHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cCCchHHHHHHHHHhccchh
Q 016027 339 SAEFEDMIRRGL-VPH----YLTFKRLNDEFKK---RGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 339 ~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 386 (396)
...++++.+... .++ ...+..+..++.. .|++++|.+.++++....+.
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 999999987421 122 3388899999999 99999999999997765443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-24 Score=185.80 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=243.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.+.. |.++.++..++..+...|++++|...|+++...+|. +...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 74 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHH
Confidence 5688999999999999999999999999875 778899999999999999999999999999987554 67889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVT--PNVVTYGTL------------VEGYCRLRRVDRAIRLVKEMRKEGIEPN 178 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 178 (396)
..+..++...|++++|...|+++.+.... .+...+..+ ...+...|++++|++.++++.+.. +.+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 99999999999999999999999886420 144455444 577788888888888888888764 456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-----
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYN----- 253 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 253 (396)
...+..+..++...|++++|...++++.+..+ .+..++..+...+...|++++|...++...+.... +...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH
Confidence 77788888888888888888888888887654 36777888888888888888888888888876322 333332
Q ss_pred -------HHHHHHhccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 254 -------YFFRYFSKFGKVEDAMNLYRKMIESGYTPDR----LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 254 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|...++++.+..+. +..++
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 2255577778888888888887775422 22 22445667777788888888888888776433 67777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFK 365 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 365 (396)
..+..++...|++++|...|+++++.. +.+...+..+..+..
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 778888888888888888888887753 233455555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-23 Score=178.53 Aligned_cols=306 Identities=10% Similarity=0.020 Sum_probs=260.3
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
++..+..++..+...|++++|...|+++...+|. +...+..+..++...|++++|...|+++.+..+. +...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHH
Confidence 4567889999999999999999999999987654 7889999999999999999999999999887433 67889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIE---PNAIVYNTV------------IDGLVEAGRFEEVSGMMERFLVCEPGPTMV 215 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 215 (396)
..++...|++++|...++++.+.. + .+...+..+ ...+...|++++|+..++++.+..+ .+..
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 155 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAE 155 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchH
Confidence 999999999999999999998873 2 244455444 5788999999999999999998765 4778
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHH-------
Q 016027 216 TYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYH------- 288 (396)
Q Consensus 216 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 288 (396)
.+..+..++...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHH
Confidence 89999999999999999999999999875 447889999999999999999999999999886422 333332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 016027 289 -----ILLKILCKEDKLDLAIQVSKEMKCRGCDIDL----DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359 (396)
Q Consensus 289 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 359 (396)
.+...+...|++++|...++++.+..+. +. ..+..+..++...|++++|...+++..+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366788999999999999999987543 33 235567889999999999999999999864 447889999
Q ss_pred HHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+..++.+.|++++|...+++..+..+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998776554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=194.78 Aligned_cols=339 Identities=12% Similarity=0.049 Sum_probs=269.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+.+.|++++|+..|+++.... |.++.++..++.+|...|++++|++.|+++...+|. +..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHH
Confidence 4688999999999999999999999999985 888999999999999999999999999999988655 78899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-------------------------------------h----------
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNV-------------------------------------V---------- 145 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------~---------- 145 (396)
..++.++...|++++|...|+.+ .....+.. .
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999999999643 22111110 0
Q ss_pred --------------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 016027 146 --------------------TYGTLVEGYCR--------LRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLV 190 (396)
Q Consensus 146 --------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 190 (396)
....+...+.. .|++++|+.+++.+.+.. +.+. .++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 11111111111 247888999999988763 2232 34666777888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 016027 191 EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMN 270 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 270 (396)
..|++++|...++++.+..+ +...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999998654 478888999999999999999999999988753 378889999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-
Q 016027 271 LYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG- 349 (396)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 349 (396)
.++++.+... .+...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++|...++++++..
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999988753 35678888999999999999999999999987544 67889999999999999999999999987632
Q ss_pred ----CCCCHHHHHHHHHHHHHc----------CCchHHHHHHHHHhccchh
Q 016027 350 ----LVPHYLTFKRLNDEFKKR----------GMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 350 ----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 386 (396)
.......+.....++.+. |++++|...+++..+..+.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 111122344555677777 9999999999997765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-23 Score=175.03 Aligned_cols=284 Identities=13% Similarity=0.001 Sum_probs=191.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+++|+++.+.. |.+..++..++..+...|++++|..+++++...+|. +...|
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 93 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-----PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS---NPVSW 93 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHH
Confidence 4477788888888888888888888888764 666777777888888888888888888888876544 66778
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSK-NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+...| ++++|...|+++.+.... +...+..+...+...|++++|++.++++.+.. +.+...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 88888888888 888888888888776432 56677778888888888888888888877764 3345566667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--------CCChhhHHHHHHHHhccC
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF--------LPSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~ 263 (396)
.|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+... +....++..+..++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 8888888888877777644 3556677777777777777777777777665310 122345555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016027 264 KVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLL 329 (396)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 329 (396)
++++|...++++.+... .+...+..+..++...|++++|...++++.+..+. +...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 55555555555554431 13444555555555555555555555555443322 344444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=172.22 Aligned_cols=295 Identities=9% Similarity=-0.003 Sum_probs=251.6
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.+.++.++..++..+...|++++|.++|+++...+|. +...+..++.++...|++++|..+++++.+... .+...+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHH
Confidence 4777888999999999999999999999999987654 556777788889999999999999999998743 377889
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 148 GTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 148 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
..+...+...| ++++|...++++.+.. +.+...+..+..++...|++++|+..++++.+..+. +...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 99999999999 9999999999999874 456788999999999999999999999999987654 56677789999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHhcC
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG--------YTPDRLTYHILLKILCKED 298 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 298 (396)
.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. .+....++..+..++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999875 3478889999999999999999999999987642 1334568889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCch
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF-KKRGMTA 371 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 371 (396)
++++|...++++.+..+. +...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999999999987644 78899999999999999999999999998754 34677788888877 4566544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-23 Score=178.63 Aligned_cols=296 Identities=11% Similarity=-0.017 Sum_probs=194.6
Q ss_pred HHHcCCHHHHHH-HHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 016027 43 YARAGMVEAAIW-TFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR 121 (396)
Q Consensus 43 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 121 (396)
+...|++++|+. .|+++....+.. ...+...+..++..+...|++++|...|+++...+|. +..++..+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~ 110 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAE 110 (368)
T ss_dssp -----------CHHHHCCCCCCSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 334466666666 666666543110 0112344666666677777777777777776665433 55666666666777
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HH
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNT---------------VI 186 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~ 186 (396)
.|++++|...|+++.+..+ .+..++..+..++...|++++|+..++++.+.. +.+...+.. .+
T Consensus 111 ~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 7777777777776666542 256666666667777777777777777666653 112222211 12
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 016027 187 DGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 187 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (396)
..+...|++++|...++++.+..+.. +..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 33337888888888888888765432 46778888888888888888888888888764 33677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCh
Q 016027 266 EDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDI----------DLDTSTMLIHLLCRMYKF 335 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~ 335 (396)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+..+.. ...+|..+..++...|++
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 88888888887764 3356778888888888888888888888887653221 267888888889999999
Q ss_pred hHHHHHHHHHH
Q 016027 336 DEASAEFEDMI 346 (396)
Q Consensus 336 ~~a~~~~~~~~ 346 (396)
++|..++++.+
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 98888876443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-20 Score=166.60 Aligned_cols=338 Identities=13% Similarity=0.063 Sum_probs=290.2
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYAR----AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+++++|+..|.++.+.+ + ..++..++..|.. .+++++|+.+|+++... .++..+..|+..|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~ 122 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---Y---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------GLPQAQQNLGVMYH 122 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHH
Confidence 789999999999998742 3 5689999999999 99999999999999874 35677888999999
Q ss_pred H----cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 84 K----QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 84 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
. .+++++|.++|+++... + +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.
T Consensus 123 ~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 123 EGNGVKVDKAESVKWFRLAAEQ--G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYS 194 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 8 88999999999998875 3 67788889988887 789999999999998875 7788888999988
Q ss_pred c----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-
Q 016027 156 R----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK- 226 (396)
Q Consensus 156 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 226 (396)
. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 7 899999999999999876 56677788888876 789999999999998753 45667778888887
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 227 ---AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKF-----GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 227 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+++++|...|+...+.+ ++..+..+...|... +++++|...|++..+.+ +...+..+...|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 899999999999998764 556777888888776 89999999999998875 4567777888887766
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 016027 299 ---KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----R 367 (396)
Q Consensus 299 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 367 (396)
+.++|..+|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCC
Confidence 7899999999999874 78889999999998 899999999999999865 46788889889988 8
Q ss_pred CCchHHHHHHHHHhccc
Q 016027 368 GMTALAQKLCNVMSSVP 384 (396)
Q Consensus 368 g~~~~A~~~~~~~~~~~ 384 (396)
++.++|..+|++..+.+
T Consensus 417 ~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 99999999999987765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=174.78 Aligned_cols=315 Identities=8% Similarity=-0.001 Sum_probs=236.6
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHH-HHHHHhhccCCCCC-ChHHHHHHHHHHHhc
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASE-YFHKRKELDQSWAP-TVRVYNILLNGWFRS 122 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 122 (396)
..+.++.+...|+.+...+ +. ++...|++++|.+ .|++.....+..+. +...+..+...+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~------~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD------AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE 77 (368)
T ss_dssp ------------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHcCC------ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC
Confidence 3444555556666555542 11 3344588999999 99987776544221 356688899999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMM 202 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (396)
|++++|...|+++.+..+ .+..++..+..++...|++++|+..++++.+.. +.+..++..+..++...|++++|...+
T Consensus 78 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp TCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998753 378899999999999999999999999999885 557889999999999999999999999
Q ss_pred HHHHhcCCCCchhhHH-H--------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhccCCHH
Q 016027 203 ERFLVCEPGPTMVTYT-S--------------LVKGYCKAGDLEGASKILKMMISRGFLP-SPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 266 (396)
+++....+.. ...+. . .+..+...|++++|...++++.+..... +..++..+...+...|+++
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 156 RDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp HHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 9999876542 22222 1 2333448999999999999999874321 5788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 267 DAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMI 346 (396)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 346 (396)
+|...++++.+.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..++.+.|++++|...|++++
T Consensus 235 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 235 KAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 336788999999999999999999999999987543 78899999999999999999999999998
Q ss_pred HCCCCC----------CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016027 347 RRGLVP----------HYLTFKRLNDEFKKRGMTALAQKLCNV 379 (396)
Q Consensus 347 ~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 379 (396)
+..... ...+|..+..++...|++++|..++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 742111 167899999999999999999998875
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-22 Score=171.44 Aligned_cols=232 Identities=12% Similarity=0.033 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+..++..+.+.|++++|+..|+++.... |.+..++..++.++...|++++|++.|+++...+|. +..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 137 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKALM 137 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHH
Confidence 346666666666666666666666666653 555666666666666666666666666666655432 455666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNV----------VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP--NAIV 181 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 181 (396)
.++.++...|++++|...|+++.+.... +. ..+..+...+...|++++|+.+++++.+.. +. +..+
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 215 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDL 215 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHH
Confidence 6666666666666666666666553211 11 112223445555555555555555555542 11 3445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK 261 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 261 (396)
+..+..++...|++++|+..++++.+..+ .+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 55555555555555555555555555433 234455555555555555555555555555442 1134445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 016027 262 FGKVEDAMNLYRKMIE 277 (396)
Q Consensus 262 ~~~~~~a~~~~~~~~~ 277 (396)
.|++++|...|+++.+
T Consensus 294 ~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 294 LGAYREAVSNFLTALS 309 (365)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=168.59 Aligned_cols=365 Identities=11% Similarity=-0.109 Sum_probs=254.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCC-------CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---CCCCch
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGH-------EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK---NFDSGA 72 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 72 (396)
.++...|++++|++.|+++++.. ..|. ...+|..++.+|...|++++|+..++++....... ..+..+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~--~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIR--SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT--THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 45778899999999999886521 1233 35689999999999999999999999988753321 123456
Q ss_pred hHHHHHHHHHHHc--CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 73 SLFEILLDSLCKQ--GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW---FRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 73 ~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.++..++.++... +++++|++.|+++...+|. +...+..+..++ ...++.++|++.+++..+..+. +..++
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~ 212 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLK 212 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHH
Confidence 7787777777665 4699999999999988665 566666655553 4567888999999998876433 56666
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 148 GTLVEGYCR----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 148 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
..+...+.. .+++++|.+++++..... +.+..++..+...+...|++++|+..++++.+..+. +..++..+..+
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 290 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 666555544 467889999999988874 567788899999999999999999999999987654 66677777666
Q ss_pred HHhc-------------------CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCh
Q 016027 224 YCKA-------------------GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDR 284 (396)
Q Consensus 224 ~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (396)
|... +.++.|...++...+... .+..++..+...+...|++++|...|++..+....+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 5432 235678888888877653 36778889999999999999999999999887544322
Q ss_pred h--hHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 285 L--TYHILLK-ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 285 ~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
. .+..+.. .....|+.++|+..|++..+..+ +..... +....+.+++++.++.+ +.+..+|..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1 2233332 23467899999999999988643 332221 22344556666666654 45678899999
Q ss_pred HHHHHcCCchHHHHHHHHHhccchhhh
Q 016027 362 DEFKKRGMTALAQKLCNVMSSVPRSME 388 (396)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 388 (396)
.+|...|++++|++.|++..+.++..+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHCC-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999877655443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-19 Score=162.13 Aligned_cols=366 Identities=12% Similarity=0.060 Sum_probs=244.6
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH-HH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS-LC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 83 (396)
+.+.|++++|..+|+++++. .|+ +...|...+..+.+.|++++|..+|+++... .|+..+|...+.. ..
T Consensus 22 ~~~~~~~~~a~~~~e~al~~--~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~------~p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQ--FPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK------VLHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTT--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT------CCCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCChHHHHHHHHHHHH
Confidence 35689999999999999985 455 4779999999999999999999999999987 3467777777653 34
Q ss_pred HcCChHHHHH----HHHHHhhccCCCCCChHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 84 KQGRVKAASE----YFHKRKELDQSWAPTVRVYNILLNGWFR---------SKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 84 ~~~~~~~A~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
..|++++|.+ +|+.+...-+...++...|...+....+ .|+++.|..+|++.++....+....|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 5677777665 7776654322223456777777776554 67888888888888763111111233221
Q ss_pred HHHH-------------HccCCHH--------------------------------------------------------
Q 016027 151 VEGY-------------CRLRRVD-------------------------------------------------------- 161 (396)
Q Consensus 151 ~~~~-------------~~~~~~~-------------------------------------------------------- 161 (396)
.... ...+++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 1100 0111222
Q ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 162 ----RAIRLVKEMRKEGIEPNAIVYNTVIDGLVE-------AGRFE-------EVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 162 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
++..+|++.+... +.++..|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..
T Consensus 252 ~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3344455444431 3345566666666554 57765 788888888762122357778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSP-TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKI-LCKEDKLD 301 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 301 (396)
+.+.|++++|..+|+.+.+.... +. ..|..++..+.+.|++++|..+|++..+... .+...+...+.. +...|+.+
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHH
T ss_pred HHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChh
Confidence 88888888888888888875321 22 4677777777778888888888888877532 223333322222 33578888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCchHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG-LVPH--YLTFKRLNDEFKKRGMTALAQKLCN 378 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 378 (396)
+|..+|++..+..+. ++..|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+.++.+
T Consensus 409 ~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 409 VAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888776432 67788888888888888888888888888753 2222 3467777777777888888888888
Q ss_pred HHhccc
Q 016027 379 VMSSVP 384 (396)
Q Consensus 379 ~~~~~~ 384 (396)
++.+.-
T Consensus 488 r~~~~~ 493 (530)
T 2ooe_A 488 RRFTAF 493 (530)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 765543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=171.16 Aligned_cols=234 Identities=12% Similarity=-0.017 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+...+..++..+.+.|++++|.++|+++...+|. +..+|..+..++...|++++|+..|+++.+..+ .+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 4455778888888888888888888888876544 677888888888888888888888888877642 357778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCC-H----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPN-A----------IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYT 218 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 218 (396)
..++...|++++|+..++++.+.. |+ . ..+..+...+...|++++|...++++.+..+.. +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 888888888888888888877652 21 1 112223445555555666666666555543321 344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED 298 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (396)
.+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 55555555555555555555555442 2234445555555555555555555555544432 112344444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKC 312 (396)
Q Consensus 299 ~~~~a~~~~~~~~~ 312 (396)
++++|...++++.+
T Consensus 296 ~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 296 AYREAVSNFLTALS 309 (365)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=163.51 Aligned_cols=264 Identities=9% Similarity=-0.012 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+.+|+++.+.. |.+..++..++..+...|++++|.+.|+++...+|. +..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 92 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVH 92 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHHH
Confidence 4578899999999999999999999999874 778889999999999999999999999999887544 67889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHcCCCC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL--------------VE-GYCRLRRVDRAIRLVKEMRKEGIEP 177 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (396)
..+...+...|++++|...++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CC
Confidence 99999999999999999999999886432 33333333 22 2555666666666666666653 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
+...+..+..++...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 555666666666666666666666666665533 245556666666666666666666666665543 224455555555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 258 YFSKFGKVEDAMNLYRKMIESGYTP-----------DRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
.+...|++++|...++++.+..... +...+..+..++...|+.++|..+++
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5666666666666665555432111 23444555555555555555555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-18 Score=154.51 Aligned_cols=319 Identities=12% Similarity=0.041 Sum_probs=275.4
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH----cCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYAR----AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK----QGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 104 (396)
..++..++..|.. .+++++|+..|+++.+. .++.++..|+..|.. .+++++|.++|+++... +
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 6689999999999 89999999999999874 356788999999999 99999999999999875 3
Q ss_pred CCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC
Q 016027 105 WAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIE 176 (396)
Q Consensus 105 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 176 (396)
+...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+++|++..+.|
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-- 181 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-- 181 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 67788889999988 889999999999998875 67788888888887 789999999999999875
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 016027 177 PNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK----AGDLEGASKILKMMISRGFLPS 248 (396)
Q Consensus 177 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 248 (396)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +
T Consensus 182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 67788888888988 899999999999998854 45677788888876 789999999999998864 5
Q ss_pred hhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCh
Q 016027 249 PTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE-----DKLDLAIQVSKEMKCRGCDIDL 319 (396)
Q Consensus 249 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~ 319 (396)
...+..+...+.. .+++++|..+|++..+.+ +...+..+...|... +++++|...+++..+.+ +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 5677778888877 899999999999998764 556777788888887 89999999999999875 56
Q ss_pred hhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhccc
Q 016027 320 DTSTMLIHLLCRMY---KFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----RGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 320 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 384 (396)
..+..+...|...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..++++..+.+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 78888888888766 8899999999999864 56788899999988 899999999999977654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=157.35 Aligned_cols=282 Identities=8% Similarity=-0.051 Sum_probs=184.7
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+...+..++..+...|++++|..+|+++...+|. +...+..+..++...|++++|...|+++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 3445677777788888888888888887776443 66677777777777888888888887777653 2256667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH-HH-HHHhcC
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL-VK-GYCKAG 228 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~ 228 (396)
...+...|++++|.+.++++.+.. +.+...+..+.... ++......+ .. .+...|
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcc
Confidence 777777777777777777776653 22222222220000 011111112 11 255666
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 229 DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777766542 256667777777777777777777777776654 2356677777777778888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCchHHHHHH
Q 016027 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP-----------HYLTFKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (396)
++.+..+. +..++..+..++...|++++|.+.++++.+..... +..++..+..++.+.|++++|..++
T Consensus 231 ~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 87766433 56777778888888888888888888877643111 3567778888888888888888888
Q ss_pred HHHhc
Q 016027 378 NVMSS 382 (396)
Q Consensus 378 ~~~~~ 382 (396)
++...
T Consensus 310 ~~~l~ 314 (327)
T 3cv0_A 310 AQNVE 314 (327)
T ss_dssp TCCSH
T ss_pred HHHHH
Confidence 76443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-18 Score=154.53 Aligned_cols=340 Identities=11% Similarity=0.038 Sum_probs=249.5
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC
Q 016027 27 VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA 106 (396)
Q Consensus 27 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (396)
.|. +..+|..++. +.+.|++++|..+|+++.... |.+..+|..++..+.+.|++++|..+|+++....
T Consensus 9 ~P~--~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-----P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---- 76 (530)
T 2ooe_A 9 NPY--DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-----PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---- 76 (530)
T ss_dssp CTT--CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----
T ss_pred CCC--CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----
Confidence 454 4779999998 478999999999999999974 8899999999999999999999999999999763
Q ss_pred CChHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCCC-ChhHHHHHHHHHHc---------cCCHHHHHHHHHHH
Q 016027 107 PTVRVYNILLNGW-FRSKNVKDAER----FWLEMRKE-NVTP-NVVTYGTLVEGYCR---------LRRVDRAIRLVKEM 170 (396)
Q Consensus 107 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 170 (396)
|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777888777543 34677777665 77776543 5443 45677777776654 68899999999998
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------HHcCCH------------------------------------------
Q 016027 171 RKEGIEPNAIVYNTVIDGL-------------VEAGRF------------------------------------------ 195 (396)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~------------------------------------------ 195 (396)
++.........|....... .+.+++
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111112222111100 001111
Q ss_pred ------------------HHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHC
Q 016027 196 ------------------EEVSGMMERFLVCEPGPTMVTYTSLVKGYCK-------AGDLE-------GASKILKMMISR 243 (396)
Q Consensus 196 ------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 243 (396)
+.+..+|++++...+ .+...|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 234455555555433 356677777777765 68877 899999999873
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 244 GFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD-R-LTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
-.+.+...+..++..+...|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+++.+... .+...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHH
Confidence 23446788899999999999999999999999986 343 2 4788888888899999999999999987632 23344
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 322 STMLIHL-LCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 322 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 4333322 346899999999999998853 346788999999999999999999999997664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-19 Score=146.43 Aligned_cols=254 Identities=12% Similarity=0.026 Sum_probs=145.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCc-hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSG-ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
+-....|++++|+..+++..... |.+ ......++++|...|+++.|+..++. ..+|+..++..+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~-----p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS-----PERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS-----HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC-----chhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHH
Confidence 34456677777777666554431 222 23445566677777777776665433 1234555666666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 66677777777777766654333 344555556666677777777766655 34556666666666667777777
Q ss_pred HHHHHHHHhcCCCCch-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTM-VTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 277 (396)
.+.++++.+..+.... ......+..+...|++++|..+|+++.+.. +.++..++.+..++...|++++|...|+++.+
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777666665322100 001112223333456666666666666552 33555666666666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 016027 278 SGYTPDRLTYHILLKILCKEDKLDL-AIQVSKEMKCR 313 (396)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 313 (396)
..+ -+..++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 532 245556666666666666544 44566666555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-19 Score=146.09 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=214.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
++-....|++..|+..+++....+|. +.......+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~--~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPE--RDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHH--HHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCch--hhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45566789999999999887654221 1134556678899999999999987654 2 3567788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
+.++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566677777899999999999999987 357788999999999999999999999
Q ss_pred HHHHHCCCCCChhhH---HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 238 KMMISRGFLPSPTTY---NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
+.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998874 443211 223344556689999999999998874 4578889999999999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKFDE-ASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 377 (396)
+. ++.++..++..+...|+.++ +.++++++++.. |+... +.+...+.+.++++..-|
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHHc
Confidence 54 78889999999999999876 578889988753 44332 223345555666655433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=155.69 Aligned_cols=284 Identities=13% Similarity=0.141 Sum_probs=135.5
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
-+.|++++|.+.+++. . .| .+|..++.++.+.|++++|++.|.++ +++..|..++..+...
T Consensus 14 ~~~~~ld~A~~fae~~-~---~~-----~vWs~La~A~l~~g~~~eAIdsfika----------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-N---EP-----AVWSQLAKAQLQKGMVKEAIDSYIKA----------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-C---Ch-----HHHHHHHHHHHHcCCHHHHHHHHHcC----------CCHHHHHHHHHHHHhC
Confidence 3568899999887766 1 33 38999999999999999999999753 3556799999999999
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIR 165 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 165 (396)
|++++|.++++.+.+. .++..+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|..
T Consensus 75 g~~EeAi~yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 75 GNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp --------------------------------------CHHHHTTTTT-------CC----------------CTTTHHH
T ss_pred CCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999988887763 3456788999999999999999988874 3677899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 016027 166 LVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF 245 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (396)
+|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---- 204 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---- 204 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----
Confidence 99976 37899999999999999999999998 378899999999999999999966555422
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------C
Q 016027 246 LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC-RGCDI------D 318 (396)
Q Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~ 318 (396)
..+.-...++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++.++.++.... .+++| +
T Consensus 205 -~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~ 281 (449)
T 1b89_A 205 -VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQ 281 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred -hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344446678899999999999999999988765 44677888887777764 34444444443322 12222 5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHH
Q 016027 319 LDTSTMLIHLLCRMYKFDEASAE 341 (396)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~a~~~ 341 (396)
...|..+.-.|...++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 67788999999999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-19 Score=139.73 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+.+.|++++|+..|+++.+.. |.++.++..++.++...|++++|+..|+++.+.+|. +...+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~ 76 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGY 76 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHH
Confidence 5688888888889999999999998888875 778888888888888899999999999888887654 67788
Q ss_pred HHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 016027 113 NILLNGWFRS-----------KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIV 181 (396)
Q Consensus 113 ~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 181 (396)
..+..++... |++++|+..|++..+..+. +...+..+..++...|++++|+..|++.++.. .+...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 8888888777 6666666666666654322 45556666666666666666666666666654 45555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 182 YNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 182 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+..+..++...|++++|+..|+++.+..+. +...+..+..++...|++++|...+++..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666666666666666666666666655432 44555556666666666666666655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=146.86 Aligned_cols=253 Identities=13% Similarity=0.043 Sum_probs=172.3
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|+..|.++++.....++.+..++..++..+...|++++|+..|+++.... |.++.++..++..+.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHH
Confidence 345678899999999888875321111236688888999999999999999999888874 677888888999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRA 163 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 163 (396)
..|++++|.+.|+++...+|. +..++..+..++...|++++|...|+++.+.. |+.......+..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HccCHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHH
Confidence 999999999999988887544 57788888888888888888888888887753 3444444444555666888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 164 IRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP---TMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
...++...... +++...+ .++..+...++.++|...+.+.....+.. +..++..+..++...|++++|...|+++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887776653 3333333 35566666777777777777775532211 1355666666777777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 016027 241 ISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLY 272 (396)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 272 (396)
.+.. |+. +.....++...|++++|++.+
T Consensus 242 l~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6653 211 222233445556666655544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-18 Score=137.84 Aligned_cols=228 Identities=10% Similarity=0.065 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 108 (396)
..++..++..+...|++++|+..|+++.+.. .++.++..++.++...|++++|.+.++++....|...++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 4578888889999999999999999888862 567788888899999999999999999888775543333
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG 188 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (396)
..++..+...+...|++++|...|+++.... |+. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 4677888888888888888888888887753 332 34555677778888887777653 3345566677777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDA 268 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 268 (396)
+...|++++|...++++.+..+. +..++..+..++...|++++|...++...+.. +.+..++..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777776443 56667777777777777777777777776653 22566666677777777777777
Q ss_pred HHHHHHHHHC
Q 016027 269 MNLYRKMIES 278 (396)
Q Consensus 269 ~~~~~~~~~~ 278 (396)
...+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=154.14 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=138.4
Q ss_pred HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC
Q 016027 44 ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK 123 (396)
Q Consensus 44 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 123 (396)
-+.|++++|.++++++.. +.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~~----------~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE----------PAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCC
Confidence 367889999999998722 248999999999999999999999663 36778999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 016027 124 NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMME 203 (396)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 203 (396)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877664 4467888999999999999999988884 4677899999999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 016027 204 RFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD 283 (396)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (396)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhC
Confidence 76 37999999999999999999999988 2788999999999999999999665543 2234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC------CHHH
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR-RGLVP------HYLT 356 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p------~~~~ 356 (396)
+.....++..|.+.|.+++|..+++...... +-....|+.+..+|++- ++++.++.++.... .+++| +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4445678899999999999999999998765 44678888888888774 45555555444332 22222 3567
Q ss_pred HHHHHHHHHHcCCchHHHHHH
Q 016027 357 FKRLNDEFKKRGMTALAQKLC 377 (396)
Q Consensus 357 ~~~l~~~~~~~g~~~~A~~~~ 377 (396)
|..++..|.+.++++.|...+
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 999999999999999988744
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-18 Score=135.51 Aligned_cols=200 Identities=16% Similarity=0.058 Sum_probs=142.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|+++.++..++..+...|++++|...|+++.+.+|. +...+..+..++.+.|++++|+..|++..+..+. +...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 677888899999999999999999999999887655 7888899999999999999999999998887533 677888
Q ss_pred HHHHHHHcc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH
Q 016027 149 TLVEGYCRL-----------RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTY 217 (396)
Q Consensus 149 ~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (396)
.+..++... |++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 888888888 77777777777777663 3456666777777777777777777777777765 466677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 218 TSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 218 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
..+..++...|++++|...|+...+..+ .+...+..+..++...|++++|...+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777776542 256666677777777777777777766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-16 Score=139.75 Aligned_cols=311 Identities=13% Similarity=-0.017 Sum_probs=226.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccc----ccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDM----VKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW--- 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 105 (396)
...|+.++.++...|++++|++.|+++.+... ....+....+|..++.+|...|++++|...++++....+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 56889999999999999999999999876421 11235556789999999999999999999999887653211
Q ss_pred --CCChHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhHHHHHHHHH---HccCCHHHHHHHHHHHHHcCCCCC
Q 016027 106 --APTVRVYNILLNGWFRS--KNVKDAERFWLEMRKENVTPNVVTYGTLVEGY---CRLRRVDRAIRLVKEMRKEGIEPN 178 (396)
Q Consensus 106 --~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 178 (396)
.....++..+..++... +++++|+..|++..+..+. +...+..+..++ ...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 12356676666666554 5799999999999886433 555665555553 34567788999999988874 445
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 016027 179 AIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNY 254 (396)
Q Consensus 179 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 254 (396)
..++..+...+.. .|++++|.+.+++.....+ .+..++..+...|...|++++|...+++..+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6666666655554 4678899999999988765 46788899999999999999999999999987433 6667776
Q ss_pred HHHHHhcc-------------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016027 255 FFRYFSKF-------------------GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 255 l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (396)
+..+|... +.++.|...+++..+.+. .+...+..+...+...|++++|...|+++.+..+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66655322 235667777877777643 3566788888899999999999999999887654
Q ss_pred CCCh--hhHHHHHH-HHHhcCChhHHHHHHHHHHHC
Q 016027 316 DIDL--DTSTMLIH-LLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 316 ~~~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 348 (396)
.+.. ..+..+.. .....|++++|+..|++.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3222 12233332 234678899999999998875
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=137.53 Aligned_cols=239 Identities=8% Similarity=0.033 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+...|++++|+..|+++.+.. |.+..++..++.++...|++++|++.++++....+........|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 3467788888889999999999999888864 66777888888899999999999999998887422222224457
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|++++|+..|++..+.... +..++..+...+...|++++|+..+++..+.. +.+...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 88888888888888888888888876433 56778888888888888888888888877663 44556666666344445
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHhcc
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGD---LEGASKILKMMISRG-FLPS------PTTYNYFFRYFSKF 262 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 262 (396)
+++++|...++++.+..+. +...+..+..++...|+ +++|...+++..+.. ..|+ ..++..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 5888888888888776543 45666667777777776 777777777766541 1122 13555566666666
Q ss_pred CCHHHHHHHHHHHHHCC
Q 016027 263 GKVEDAMNLYRKMIESG 279 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~ 279 (396)
|++++|...++++.+..
T Consensus 235 ~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD 251 (272)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 77777777776666653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=142.17 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC-hHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR-VKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+|..++.++...|++++|+..|++++... |.+..+|+.++.++...|+ +++|+..|+++...+|. +...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHH
Confidence 5688889999999999999999999999885 8888899999999999996 99999999999988665 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
|+.+..++...|++++|+..|+++++.... +..+|..+..++...|++++|+..++++++.. +-+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999887544 78888999999999999999999999998875 4577888888888888
Q ss_pred -cCCHHHH-----HHHHHHHHhcCCCCchhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 016027 192 -AGRFEEV-----SGMMERFLVCEPGPTMVTYTSLVKGYCKAG--DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG 263 (396)
Q Consensus 192 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (396)
.|..++| +..+++.+...+. +...|..+..++...| ++++|.+.+..+ +. .+.+...+..++.+|...|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 5554676 4788888876553 6678888888888877 578888888877 43 2346677777888877763
Q ss_pred ---------CHHHHHHHHHHH-HHCCCCCChhhHHHHHHHH
Q 016027 264 ---------KVEDAMNLYRKM-IESGYTPDRLTYHILLKIL 294 (396)
Q Consensus 264 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 294 (396)
..++|..+|+++ .+.+ +.....|..+...+
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247888888887 5543 12334454444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=149.95 Aligned_cols=346 Identities=13% Similarity=0.020 Sum_probs=205.6
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH---HHHHHHHHHHhhcccccCCCCchhHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV---EAAIWTFEFANNLDMVKNFDSGASLFEIL 78 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (396)
...+.+.|++++|+++|.++.+.+ . ..++..++..+...|+. ++|+..|+++.+. ++..+..+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g-~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------~~~A~~~L 75 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG-Y-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-C-----CTGGGTCC------------------------------------CHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-C-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 346678899999999999987642 2 33677888888888888 8999999988752 45667788
Q ss_pred HHHHHHcC-----ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhHHHHH
Q 016027 79 LDSLCKQG-----RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK---DAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 79 ~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+..+...+ ++++|.++|+++... + +...+..|...|...+... ++.+.+......| +......+
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~L 147 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFAN--G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQ 147 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHT--T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88666655 788999999998874 3 2336666777776655433 3444455444443 34556666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG---RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
...|...+.++++......+.+.-...++..+..+..+|...| +.++|+..|++..+.|+ ++...+..+...|...
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC
Confidence 6667666644443333222222211223336667777777777 77778888888777665 3445445566666544
Q ss_pred ----CChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--hccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--
Q 016027 228 ----GDLEGASKILKMMISRGFLPSPTTYNYFFRY-F--SKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED-- 298 (396)
Q Consensus 228 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 298 (396)
+++++|...|+... . -++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 57778888887776 3 245556666665 3 45777888888888777765 5566666666665 44
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 016027 299 ---KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKK----R 367 (396)
Q Consensus 299 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 367 (396)
++++|..+|++.. .| ++.....|...|.. ..++++|...|++..+.|. | .....|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCC
Confidence 7788888887776 32 56667777766665 3377788888887777653 2 244455555543 3
Q ss_pred CCchHHHHHHHHHhccch
Q 016027 368 GMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 368 g~~~~A~~~~~~~~~~~~ 385 (396)
.+.++|..++++..+.+.
T Consensus 372 ~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 467777777777655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-17 Score=134.54 Aligned_cols=225 Identities=10% Similarity=0.048 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI--EPN----AIVY 182 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 182 (396)
...+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|+..++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556666677777777777777777766655 4666666677777777777777777766665421 111 3555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKF 262 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 262 (396)
..+..++...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666666666666666666666666532 222 23444455566666666655542 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 016027 263 GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEF 342 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 342 (396)
|++++|...++++.+... .+..++..+..++...|++++|...++++.+..+. +...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555432 23445555555555555555555555555544322 3445555555555555555555555
Q ss_pred HHHHH
Q 016027 343 EDMIR 347 (396)
Q Consensus 343 ~~~~~ 347 (396)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-16 Score=144.82 Aligned_cols=317 Identities=14% Similarity=0.068 Sum_probs=187.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.|...|.+.+|++++++++-.+ .+-.-....-+.++.+..+. +..+..++.++.... ....++..+
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----------d~~eIA~Ia 1059 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----------DAPDIANIA 1059 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----------cHHHHHHHH
Confidence 45566677777777777666321 10000122333344433333 333333333333221 122356666
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1060 i~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 667777777777776531 1222233322 5566777777766441 46667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
|++.|.+. .|...|..++.++.+.|++++|++++....+... +....+.++.+|++.+++++.... .+
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 77777443 3566667777777777777777777777666432 322333477777777776643333 21
Q ss_pred CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 016027 243 RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTS 322 (396)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 322 (396)
.++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 234455666777777777777777777663 366777777777777777777777662 55666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 323 TMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 323 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6666666666666666665442 2234445666777777777777777777665443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-17 Score=140.11 Aligned_cols=251 Identities=12% Similarity=0.097 Sum_probs=187.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN-VKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
|.+..+|..+...+...|++++|++.|+++...+|. +..+|+.+..++...|+ +++|+..|+++++.... +...|
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~ 169 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVW 169 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 334677888888888899999999999999888665 77888888888888886 99999999998887544 77888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh-
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK- 226 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 226 (396)
..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++..+. +...|+.+..++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 888888888899999999998888875 557778888888888888888899888888887663 67788888888888
Q ss_pred cCChHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-
Q 016027 227 AGDLEGA-----SKILKMMISRGFLPSPTTYNYFFRYFSKFG--KVEDAMNLYRKMIESGYTPDRLTYHILLKILCKED- 298 (396)
Q Consensus 227 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 298 (396)
.|..++| +..+++.++.... +...|..+..++...| ++++|++.+.++ +.. +.+...+..++.+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhc
Confidence 5554666 4777777776433 5667777777777766 577777777776 332 335566677777777653
Q ss_pred --------CHHHHHHHHHHH-HHcCCCCChhhHHHHHHHH
Q 016027 299 --------KLDLAIQVSKEM-KCRGCDIDLDTSTMLIHLL 329 (396)
Q Consensus 299 --------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 329 (396)
..++|..+++++ .+..+ .....|..+...+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 247777777777 54422 1334454444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-16 Score=144.90 Aligned_cols=314 Identities=13% Similarity=0.075 Sum_probs=242.9
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+...|++++|..+|++.-. + ..+...+ +...|++++|.++.+++. ++.+|..++.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~----~~A~~VL---ie~i~nldrAiE~Aervn----------~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N----TSAVQVL---IEHIGNLDRAYEFAERCN----------EPAVWSQLAKA 1114 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H----HHHHHHH---HHHHhhHHHHHHHHHhcC----------CHHHHHHHHHH
Confidence 3457788999999999988531 1 2223333 237889999999988552 35789999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
+...|++++|++.|.++ .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.++++
T Consensus 1115 ql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 99999999999999775 277889999999999999999999999887764 33333345889999999888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+...+ ++ .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.+.
T Consensus 1185 ele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 64433 22 346667778999999999999999999985 37999999999999999999999876
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 2668899999999999999998887654 23466777899999999999999999999988665 335667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHHcCCchHHHH
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRG-LVP------HYLTFKRLNDEFKKRGMTALAQK 375 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p------~~~~~~~l~~~~~~~g~~~~A~~ 375 (396)
|+.+..+|.+. ++++.++.++...++. ++| +...|..++..|.+.|+++.|..
T Consensus 1317 ftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1317 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 77777777763 3444444444333322 222 45679999999999999999984
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-17 Score=133.72 Aligned_cols=236 Identities=12% Similarity=0.008 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN--VVTYGTL 150 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 150 (396)
..+...+..+...|++++|+..|+++.+.+|. +...+..+..++...|++++|+..++++.+.+..|+ ..+|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 44566777777888888888888887776543 455677777777788888888888887776431111 2236677
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...+...|++++|++.+++..+.. +.+..++..+..++...|++++|+..+++..+..+ .+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777653 34556667777777777777777777777766533 2455555555233334467
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhcCCH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK---VEDAMNLYRKMIESG-YTPD------RLTYHILLKILCKEDKL 300 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 300 (396)
++|...|+.+.+... .+...+..+..++...++ +++|...++++.+.. ..|+ ..++..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 777777776666532 234555555555555555 555666665554431 0122 13444455555555666
Q ss_pred HHHHHHHHHHHHcC
Q 016027 301 DLAIQVSKEMKCRG 314 (396)
Q Consensus 301 ~~a~~~~~~~~~~~ 314 (396)
++|...++++.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 66666666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-16 Score=128.77 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|++.|+++.... |.+..++..++..+...|++++|.+.++++....+. +...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHH
Confidence 3456666777777777777777777766653 555666666777777777777777777776665432 55666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
..+...+...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+..++..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 666666667777777777776666522222 34455666666666666666666666666553 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 192 AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
.|++++|...++++.+..+ .+...+..+...+...|++++|...++.+.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666666655433 34455555666666666666666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-17 Score=141.72 Aligned_cols=345 Identities=12% Similarity=-0.002 Sum_probs=236.8
Q ss_pred hhhhhccCc---hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcccccCCCCchhH
Q 016027 3 KVLAKAKEF---DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG-----MVEAAIWTFEFANNLDMVKNFDSGASL 74 (396)
Q Consensus 3 ~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 74 (396)
..|...|+. ++|+..|.++.+. . ..++..++..+...| ++++|+..|+++...+ ++.+
T Consensus 43 ~~y~~~g~~~d~~~A~~~~~~A~~~--~-----~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A 108 (452)
T 3e4b_A 43 DIQVGTRDPAQIKQAEATYRAAADT--S-----PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG-------EGNT 108 (452)
T ss_dssp -----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT-------CSSC
T ss_pred HHHHccCCCCCHHHHHHHHHHHHhC--C-----HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC-------CHHH
Confidence 345567777 9999999998864 3 447888888676666 8899999999998853 3347
Q ss_pred HHHHHHHHHHcCChHH---HHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 75 FEILLDSLCKQGRVKA---ASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+..|+..|...+..++ +.+.+...... + +...+..+...|...+.++++......+.+.-...+...+..+.
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg 183 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAA--G---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELA 183 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--T---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8889999988765444 55555555443 3 45677888888888886666555544333322223444888899
Q ss_pred HHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhhHHHHHHH-
Q 016027 152 EGYCRLR---RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA----GRFEEVSGMMERFLVCEPGPTMVTYTSLVKG- 223 (396)
Q Consensus 152 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 223 (396)
..|...| +.++|++.|++..+.| +++...+..+..+|... +++++|+..|++.. . -+...+..+...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHH
Confidence 9999999 9999999999999997 56666667777777655 79999999999987 2 355667777776
Q ss_pred H--HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 016027 224 Y--CKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFG-----KVEDAMNLYRKMIESGYTPDRLTYHILLKILCK 296 (396)
Q Consensus 224 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (396)
+ ...+++++|...|++..+.| ++..+..+...|. .| ++++|..+|++.. .| +......+...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHC
Confidence 4 56899999999999999876 6677888888877 55 9999999999887 33 66777778877776
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 016027 297 ----EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRG 368 (396)
Q Consensus 297 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 368 (396)
..++++|..+|++..+.| ++.....|...|.. ..++.+|..+|+...+.|. ++.......+......+
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPA 406 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHH
Confidence 349999999999999876 45667777777764 4589999999999998873 33333333333333445
Q ss_pred CchHHHHHHHHHhcc
Q 016027 369 MTALAQKLCNVMSSV 383 (396)
Q Consensus 369 ~~~~A~~~~~~~~~~ 383 (396)
+.++|.++.++..+.
T Consensus 407 ~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 407 QRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667788887775544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-16 Score=123.91 Aligned_cols=202 Identities=9% Similarity=-0.023 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|++.|+++.+.. |.+..++..++..+...|++++|.+.++++....|. +..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-----PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---SAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHH
Confidence 5678888888888888888888888888764 666778888888888888888888888888776443 66777
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016027 113 NILLNGWFRS-KNVKDAERFWLEMRKENVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLV 190 (396)
Q Consensus 113 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (396)
..++..+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++.+.. +.+...+..+..++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 8888888888 88888888888887732222 35667777777788888888888888777763 345666777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 191 EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
..|++++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77888888777777776544235556666666777777777777777777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-15 Score=125.04 Aligned_cols=223 Identities=12% Similarity=0.012 Sum_probs=156.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH----cCChHHHHHHHHHHhhccCCCCCC
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK----QGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
..++..++..+...|++++|++.|+++.+ +.++.++..++..|.. .+++++|.++|+++.+. + +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~ 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N---Y 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---C
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C---C
Confidence 55777888888888888888888887776 3345667778888888 88888888888887765 2 5
Q ss_pred hHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 109 VRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 109 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
...+..+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..+++..+.+ +..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 6777777777777 788888888888777764 66677777777777 777777777777777764 455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 181 VYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK----AGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 181 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
.+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHH
Confidence 56666666666 677777777777776642 34556666666666 677777777777766653 24455
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHHCC
Q 016027 253 NYFFRYFSK----FGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 253 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 279 (396)
..+...|.. .+++++|...|++..+.+
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 566666666 666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-17 Score=132.36 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+|..++..+...|++++|+..|+++.+.. |.+..++..++..+...|++++|.+.|+++....+. +...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 94 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KEDAIPYINFANLLSSVNELERALAFYDKALELDSS---AATAY 94 (243)
T ss_dssp -------------------CCTTHHHHHTTC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHH
Confidence 5678888888999999999999999888864 677888888899999999999999999988876543 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 8888888888899999988888877643 367777888888888888888888888887763 44666777777888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG 244 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 244 (396)
|++++|...++++.+..+ .+..++..+..++...|++++|...++++.+..
T Consensus 173 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888777644 356677777778888888888888888877753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-15 Score=124.38 Aligned_cols=225 Identities=15% Similarity=0.029 Sum_probs=138.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCh
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 144 (396)
|.++.++..++..+...|++++|.++|+++.+. + +...+..+...+.. .+++++|...|++..+.+ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL--K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 445666777777777777777777777777652 2 45666677777777 777777777777776654 56
Q ss_pred hHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhh
Q 016027 145 VTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE----AGRFEEVSGMMERFLVCEPGPTMVT 216 (396)
Q Consensus 145 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (396)
..+..+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 666667777766 677777777777766654 45566666666666 666777776666666643 3445
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 016027 217 YTSLVKGYCK----AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYH 288 (396)
Q Consensus 217 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (396)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 5555555555 566666666666655542 33445555555555 555555555555555543 134444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHc
Q 016027 289 ILLKILCK----EDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 289 ~l~~~~~~----~~~~~~a~~~~~~~~~~ 313 (396)
.+...|.. .+++++|...+++..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45555554 55555555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=136.77 Aligned_cols=252 Identities=12% Similarity=-0.018 Sum_probs=157.3
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS 122 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (396)
+...|++++|+..|+++.+.... ..|.++.++..++..+...|++++|.+.|+++...+|. +..+|..++..+...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHc
Confidence 34567888888888888875211 11345677888888888888888888888888876543 677888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMM 202 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 202 (396)
|++++|...|+++.+... .+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888888877642 256777777788888888888888888877763 33333334444455667777777777
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 203 ERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP---SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
.+.....+ ++...+ .++..+...++.++|...+.......... +..++..+...+...|++++|...|+++...+
T Consensus 168 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 66665433 232233 35555666666666666666665432110 13445555555666666666666666555542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 280 YTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
|+. +.....++...|++++|++.+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 211 112233444455555554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-17 Score=129.85 Aligned_cols=203 Identities=12% Similarity=0.065 Sum_probs=168.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+...|++++|...|.++++. .|+ +..++..++.++...|++++|+..|+++.... |.+..++..++..+
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~--~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEE--NKE--DAIPYINFANLLSSVNELERALAFYDKALELD-----SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------CCTTHHHHHTT--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHh--Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CcchHHHHHHHHHH
Confidence 4577899999999999999985 444 37799999999999999999999999999874 77889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999887543 678899999999999999999999999988743 378889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
|+..++++.+.. +.+..++..+..++...|++++|...++++.+..+. +...+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHH
Confidence 999999998874 556788999999999999999999999999987553 44444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-15 Score=121.23 Aligned_cols=205 Identities=12% Similarity=0.060 Sum_probs=154.5
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.++.++..++..+...|++++|.+.|+++....|. +...+..+...+...|++++|...|+++.+... .+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 80 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINN 80 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHH
Confidence 566778888888899999999999999988876543 577888888888888899999888888877643 3667788
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 016027 149 TLVEGYCRL-RRVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCK 226 (396)
Q Consensus 149 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (396)
.+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+..++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Confidence 888888888 88888888888887732223 3566777777888888888888888887776442 56677777777888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 227 AGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 227 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
.|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888877776543135666666666777777777777777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=123.92 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
+.++..++..+...|++++|.+.|+++...++. +...+..+...+...|++++|.+.|+++.+... .+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHH
Confidence 556777777777888888888888877766433 566777777777778888888888877776542 2566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
..+...|++++|.++++++.+.+..| +...+..+..++...|++++|...++++.+..+ .+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCH
Confidence 77777777777777777776622223 445566666777777777777777777766543 2456666666777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
++|...++.+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766653 235555666666666667777777766666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-17 Score=140.69 Aligned_cols=298 Identities=14% Similarity=0.075 Sum_probs=200.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc----hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG----ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW--- 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 105 (396)
...+...+..+...|++++|+..|+++.... |.+ ..++..++..+...|++++|...++++.......
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 5678889999999999999999999999874 444 3578889999999999999999999876542111
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHccCC--------------------H
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN----VVTYGTLVEGYCRLRR--------------------V 160 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~ 160 (396)
+....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 113557788889999999999999999887653110 11 3477788888888888 8
Q ss_pred HHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----chhhHHHHHHHHHhcCCh
Q 016027 161 DRAIRLVKEMRKE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-P----TMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 161 ~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~ 230 (396)
++|+..+++..+. +. +....++..+...+...|++++|...+++..+.... + ...++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888888776543 11 112345667777788888888888888877653211 1 123667777777888888
Q ss_pred HHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCH
Q 016027 231 EGASKILKMMISRGFL-PS----PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYT-PD----RLTYHILLKILCKEDKL 300 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~ 300 (396)
++|...+++....... ++ ..++..+...+...|++++|...+++..+.... .+ ..++..+..++...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 8888887776643110 01 345666677777777777777777766543100 11 34556666677777777
Q ss_pred HHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCh
Q 016027 301 DLAIQVSKEMKCRGC-----DIDLDTSTMLIHLLCRMYKF 335 (396)
Q Consensus 301 ~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 335 (396)
++|...+++..+... .....++..+...+...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777777776654310 11133444555555555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=156.21 Aligned_cols=150 Identities=10% Similarity=0.131 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRK---ENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999987754 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 016027 186 IDGLVEAGR-FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPS------PTTYNYFFRY 258 (396)
Q Consensus 186 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 258 (396)
|.++++.|+ .++|.++|++|.+.|..||..+|+.++....+. .+++.++.+ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999887 578889999999999999999999887655443 333333333 2233333 4455556666
Q ss_pred HhccC
Q 016027 259 FSKFG 263 (396)
Q Consensus 259 ~~~~~ 263 (396)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-19 Score=161.09 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 214 MVTYTSLVKGYCKAGDLEGASKILKMMIS---RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
..+|+++|.+|++.|++++|.++|..|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666655543 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016027 291 LKILCKEDK-LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR 331 (396)
Q Consensus 291 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 331 (396)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666544433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=139.40 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch----hHHHHHHHHHHHcCChHHHHHHHHHHhhccCC---C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA----SLFEILLDSLCKQGRVKAASEYFHKRKELDQS---W 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 105 (396)
...+..++..+...|++++|+..|+++.+.. |.++ .++..++..|...|++++|.+.++++...... .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 3456678888899999999999999998874 4443 47888888999999999999998887654111 1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCChhHHHHHHHHHHccCC-----------------HHHH
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKE----N-VTPNVVTYGTLVEGYCRLRR-----------------VDRA 163 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a 163 (396)
.....++..+...+...|++++|...|++..+. + .+....++..+...+...|+ +++|
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 124566778888888889999988888877653 1 11123466777777777788 7777
Q ss_pred HHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C----chhhHHHHHHHHHhcCChHHH
Q 016027 164 IRLVKEMRKE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-P----TMVTYTSLVKGYCKAGDLEGA 233 (396)
Q Consensus 164 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a 233 (396)
++.+++..+. +. +....++..+...+...|++++|...+++..+.... . ...++..+..+|...|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 7776665442 11 111234555566666666666666666665543111 0 012445555555556666666
Q ss_pred HHHHHHHHHCCCC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 234 SKILKMMISRGFL-----PSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 234 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
...+++....... ....++..+...+...|++++|...+++..
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432100 012334444444555555555555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=139.22 Aligned_cols=303 Identities=15% Similarity=0.082 Sum_probs=229.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT-VRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVTP- 142 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 142 (396)
......+...+..+...|++++|...|+++....+...+. ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4556677889999999999999999999999875441111 357888999999999999999999987543 2111
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHHcCC--------------------HHH
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----I-EPNAIVYNTVIDGLVEAGR--------------------FEE 197 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~--------------------~~~ 197 (396)
...++..+...+...|++++|+..+++..+.. . .....++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 24577888999999999999999999887641 0 1114477788889999999 999
Q ss_pred HHHHHHHHHhc----CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCCHHH
Q 016027 198 VSGMMERFLVC----EP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL-PS----PTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 198 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 267 (396)
|...+++.... +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887653 11 112457888899999999999999999988754111 11 2378888899999999999
Q ss_pred HHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChhH
Q 016027 268 AMNLYRKMIESGYT-PD----RLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD-ID----LDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 268 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 337 (396)
|...+++....... .+ ..++..+...+...|++++|...++++.+.... .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987753111 11 457788889999999999999999998764211 11 5677888999999999999
Q ss_pred HHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCch
Q 016027 338 ASAEFEDMIRR----GLV-PHYLTFKRLNDEFKKRGMTA 371 (396)
Q Consensus 338 a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~ 371 (396)
|...+++..+. +.. ....++..+...+...|+..
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999987652 211 12456777888888888763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=116.64 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+...|++++|++.|+++.+.+ |.++.++..++.+|...|++++|...+..+....+. +...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 76 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHH
Confidence 5678888888888888888888888888875 777888888888888888888888888888776443 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...++++.+...+.+.....+. +...+..+..++...|++++|++.|++..+.. +.+..++..+..++.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHC
Confidence 77778888888888888888887776433 66777788888888888888888888887764 45667777888888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 016027 193 GRFEEVSGMMERFLVC 208 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~ 208 (396)
|++++|+..|+++++.
T Consensus 155 g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 8888888888887774
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-17 Score=141.95 Aligned_cols=274 Identities=16% Similarity=0.092 Sum_probs=205.6
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCCCchhHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVS--KDTFVILIRRYARAGMVEAAIWTFEFANNLDMV-KNFDSGASLFEILL 79 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 79 (396)
..+...|++++|+..|+++++. .|+... ..++..++.++...|++++|+..|+++...... .+.+....++..++
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 4567899999999999999985 333110 157889999999999999999999999875211 11245567889999
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCC---CCCChHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHhC-
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQS---WAPTVRVYNILLNGWFRSKN-----------------VKDAERFWLEMRKE- 138 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~- 138 (396)
..|...|++++|...++++....+. ......++..+...+...|+ +++|+..+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765211 11235578889999999999 99999999887542
Q ss_pred ---CC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 139 ---NV-TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PN----AIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 139 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
+. .....++..+...+...|++++|+..+++..+.... .+ ...+..+..++...|++++|...+++.....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11 112347888899999999999999999998764210 11 2367788899999999999999999887642
Q ss_pred CC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 210 PG-----PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 210 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
.. ....++..+..++...|++++|...+++...... .....++..+...+...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 21 1256788899999999999999999998875411 111335666667777777777777777776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-14 Score=121.57 Aligned_cols=233 Identities=10% Similarity=0.082 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHc----CCH----HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH-------cCCh-------HHH
Q 016027 34 DTFVILIRRYARA----GMV----EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK-------QGRV-------KAA 91 (396)
Q Consensus 34 ~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A 91 (396)
..|...+....+. ++. ++|+..|+++.... |.++.+|..++..+.. .|++ ++|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 3555555544333 233 68888999988875 8888888888888764 4775 888
Q ss_pred HHHHHHHhh-ccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hh-HHHHHHHHHHccCCHHHHHHHHH
Q 016027 92 SEYFHKRKE-LDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN-VV-TYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
..+|+++.. .+|. +...|..++..+.+.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+
T Consensus 84 ~~~~~rAl~~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 84 ANIYERAISTLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888887 4443 5667888888888888888888888888875 333 33 67777777777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 016027 169 EMRKEGIEPNAIVYNTVIDGLV-EAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG-FL 246 (396)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 246 (396)
+..+.. +.+...|........ ..|++++|..+|++.++..+. +...|..++..+.+.|++++|..+|++..... .+
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 877663 334444443333222 257777777777777665442 56666677777777777777777777777642 23
Q ss_pred C--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 247 P--SPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 247 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
| ....|..++......|+.+.|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 3445666666666667777777777666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-16 Score=132.15 Aligned_cols=204 Identities=17% Similarity=0.130 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc----hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC---C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG----ASLFEILLDSLCKQGRVKAASEYFHKRKELDQS---W 105 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 105 (396)
...+...+..+...|++++|+..|+++.+.. |.+ ..++..++..+...|++++|.+.++++...... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc
Confidence 3467778889999999999999999999874 444 467888999999999999999999887654111 1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHccCC--------------------H
Q 016027 106 APTVRVYNILLNGWFRSKNVKDAERFWLEMRKENV-TPN----VVTYGTLVEGYCRLRR--------------------V 160 (396)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~ 160 (396)
.....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 12355677888888899999999999888765311 012 3366777777888888 7
Q ss_pred HHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CchhhHHHHHHHHHhcCCh
Q 016027 161 DRAIRLVKEMRKE----GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG-----PTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 161 ~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 230 (396)
++|.+.+++..+. +. +....++..+...+...|++++|...+++..+.... ....++..+...+...|++
T Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 7777777665432 10 111234555556666666666666666665432110 0112444555555555555
Q ss_pred HHHHHHHHHHH
Q 016027 231 EGASKILKMMI 241 (396)
Q Consensus 231 ~~a~~~~~~~~ 241 (396)
++|...+++..
T Consensus 240 ~~A~~~~~~al 250 (338)
T 3ro2_A 240 ETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-15 Score=123.19 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=182.6
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHH-------cCCH-------HHHHHHHHHHhh-cccccCCCCchhHHH
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYAR-------AGMV-------EAAIWTFEFANN-LDMVKNFDSGASLFE 76 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (396)
++|...|++++.. .|+ +..+|..++..+.. .|++ ++|+.+|+++.. .. |.+..+|.
T Consensus 33 ~~a~~~~~~al~~--~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-----p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-----KKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHH--HTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-----TTCHHHHH
T ss_pred HHHHHHHHHHHHH--cCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-----cccHHHHH
Confidence 6888999999984 455 57799999998864 5886 999999999998 44 67788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVR-VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
.++..+...|++++|.++|+++.+.+|. +.. +|..++..+.+.|++++|..+|++..+... ++...|...+....
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 9999999999999999999999986443 344 899999999999999999999999998753 35555554444432
Q ss_pred -ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--chhhHHHHHHHHHhcCChH
Q 016027 156 -RLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE-PGP--TMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 156 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~ 231 (396)
..|++++|.++|++.++.. +.+...+..++..+.+.|++++|..+|+++.... ..| ....|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3699999999999998873 4577889999999999999999999999999863 233 4678889999999999999
Q ss_pred HHHHHHHHHHHCC
Q 016027 232 GASKILKMMISRG 244 (396)
Q Consensus 232 ~a~~~~~~~~~~~ 244 (396)
.|..+++++.+..
T Consensus 259 ~a~~~~~~a~~~~ 271 (308)
T 2ond_A 259 SILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998863
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=135.11 Aligned_cols=274 Identities=14% Similarity=0.068 Sum_probs=196.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CCCCchhHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVS--KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSGASLFEILL 79 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 79 (396)
..+...|++++|...|+++++. .|+... ..++..++..+...|++++|++.++++....... ..+....++..++
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 4577899999999999999985 333110 3578899999999999999999999987652211 1234467788999
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 016027 80 DSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKN--------------------VKDAERFWLEMR 136 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 136 (396)
..+...|++++|.+.++++....+.... ...++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765332111 13478888999999999 999999998875
Q ss_pred hC----CCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 137 KE----NVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----I-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 137 ~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.. +.. ....++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 124477888899999999999999999887541 1 1113367788899999999999999999887
Q ss_pred hcCCC-----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 207 VCEPG-----PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 207 ~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
..... ....++..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53211 0145666777778888888888888777654310 0012345555666666666666666666655
Q ss_pred HC
Q 016027 277 ES 278 (396)
Q Consensus 277 ~~ 278 (396)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-15 Score=113.32 Aligned_cols=169 Identities=15% Similarity=0.111 Sum_probs=142.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
..++.+|..++..|...|++++|++.|+++.+.+|. +..++..+..++.+.|++++|...+......... +...+.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 77 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYY 77 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHH
Confidence 356778999999999999999999999999988765 7888999999999999999999999988876433 677778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG 228 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (396)
.+...+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|++.|++..+..+ .+..+|..+..+|.+.|
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCC
Confidence 88888888999999999998888774 55677888888889999999999999999888765 36778888888999999
Q ss_pred ChHHHHHHHHHHHHC
Q 016027 229 DLEGASKILKMMISR 243 (396)
Q Consensus 229 ~~~~a~~~~~~~~~~ 243 (396)
++++|...|++..+.
T Consensus 156 ~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 156 LRDEAVKYFKKALEK 170 (184)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-15 Score=128.99 Aligned_cols=298 Identities=7% Similarity=-0.028 Sum_probs=159.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCC--CCCCChhHHHHHHH--HHHHcCCHHHHH-----------HHHHHHhhcccccCCC
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEV--PDFVSKDTFVILIR--RYARAGMVEAAI-----------WTFEFANNLDMVKNFD 69 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~~~~l~~--~~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~ 69 (396)
+.+++++++|..++.++.+.... .+ .+...|..++. .....+.++.+. +.++.+... +
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~-~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~------~ 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEED-QDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK------Q 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH------T
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc------C
Confidence 45678888888888776543211 12 01223333332 222334444444 555555443 2
Q ss_pred Cchh------HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-
Q 016027 70 SGAS------LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN- 139 (396)
Q Consensus 70 ~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 139 (396)
.+.. .+...+..+...|++++|...|+++...-..... ...++..+...+...|++++|...+++..+.-
T Consensus 95 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 95 ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2211 2233666777788888888888887664222111 24567777777788888888888777765431
Q ss_pred -CC----CChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 016027 140 -VT----PNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EP----NAIVYNTVIDGLVEAGRFEEVSGMMERFLVC- 208 (396)
Q Consensus 140 -~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 208 (396)
.. ....+++.+..+|...|++++|+..+++..+... .+ ...++..+..+|...|++++|+..+++..+.
T Consensus 175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 10 0134566666777777777777777766654310 01 1135556666666777777777766666552
Q ss_pred ---CC-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHH
Q 016027 209 ---EP-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG----FLPSPTTYNYFFRYFSKFGK---VEDAMNLYRKMIE 277 (396)
Q Consensus 209 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 277 (396)
+. +....++..+..++...|++++|...+++..+.. .+.....+..+...+...|+ ..+|+.++++.
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-- 332 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-- 332 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--
Confidence 11 2234556666666666666666666666655421 11111223445555555555 44444444433
Q ss_pred CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 278 SGYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 278 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
+..| ....+..+...|...|++++|...+++..+
T Consensus 333 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 122344455555555555555555555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-16 Score=135.97 Aligned_cols=215 Identities=11% Similarity=0.005 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh-HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh
Q 016027 48 MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV-KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK 126 (396)
Q Consensus 48 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (396)
.++++++.++...... +.+..++..++..+...|++ ++|++.|+++.+.+|. +...|..+..++...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-----~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-----QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHH
Confidence 4566666666555542 55666666677777777777 7777777776665443 5666667777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRL---------RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA----- 192 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 192 (396)
+|...|++..+.. |+...+..+..++... |++++|++.+++..+.. +.+...+..+..+|...
T Consensus 155 ~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 7777777766643 4456666666666666 77777777777766653 34556666666666666
Q ss_pred ---CCHHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHH
Q 016027 193 ---GRFEEVSGMMERFLVCEPG--PTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVED 267 (396)
Q Consensus 193 ---~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 267 (396)
|++++|+..|+++.+..+. .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665331 25566666777777777777777777776665422 45566666666666677776
Q ss_pred HHHHHHH
Q 016027 268 AMNLYRK 274 (396)
Q Consensus 268 a~~~~~~ 274 (396)
|...+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 6665544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-15 Score=127.91 Aligned_cols=231 Identities=12% Similarity=-0.023 Sum_probs=145.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhhHH
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRKE----GIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG------PTMVTYT 218 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 218 (396)
....+...|++++|+..+++..+. +-++ ...++..+..++...|++++|+..+.+..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777666543 1111 2345666667777777777777777766553111 1134566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFL-P----SPTTYNYFFRYFSKFGKVEDAMNLYRKMIES----GY-TPDRLTYH 288 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 288 (396)
.+..+|...|++++|...+++..+.... + ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777777777777777776643110 1 1236667777788888888888888777662 22 22355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 016027 289 ILLKILCKEDKLDLAIQVSKEMKCRG----CDIDLDTSTMLIHLLCRMYK---FDEASAEFEDMIRRGLVPH-YLTFKRL 360 (396)
Q Consensus 289 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 360 (396)
.+..++...|++++|...+++..+.. .+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 77778888888888888888776531 11112334567777777787 66666666554 22222 3456677
Q ss_pred HHHHHHcCCchHHHHHHHHHhcc
Q 016027 361 NDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 361 ~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
...|...|++++|...+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 78888888888888888886554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=133.80 Aligned_cols=218 Identities=9% Similarity=-0.058 Sum_probs=188.0
Q ss_pred CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 86 GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV-KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
+.++++++.++......+ .+...+..+...+...|++ ++|++.|++..+.... +..+|..+..+|...|++++|+
T Consensus 82 ~~~~~al~~l~~~~~~~~---~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ---VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 447888888888766432 4788999999999999999 9999999999887533 6889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc--------
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEA---------GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA-------- 227 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 227 (396)
+.|++..+. .|+...+..+..++... |++++|+..++++.+..+. +...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcccc
Confidence 999999987 46678889999999999 9999999999999997653 688899999999998
Q ss_pred CChHHHHHHHHHHHHCCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 016027 228 GDLEGASKILKMMISRGFL--PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQ 305 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 305 (396)
|++++|...|++..+.... .+...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987431 37889999999999999999999999999887533 66778888999999999999998
Q ss_pred HHHHHH
Q 016027 306 VSKEMK 311 (396)
Q Consensus 306 ~~~~~~ 311 (396)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 776553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=127.88 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=134.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----C
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK---NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD-----Q 103 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~ 103 (396)
...++..++..+...|++++|+.+|+++.+..... ..+....++..++..+...|++++|...++++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 36789999999999999999999999998842111 125567788999999999999999999999987652 1
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc---
Q 016027 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE------NV-TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--- 173 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 173 (396)
..+....++..+...+...|++++|...|+++.+. +. +....++..+...+...|++++|+++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 22334667888899999999999999999988764 11 223456777888888888999888888888764
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 174 ---GI-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 174 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+. +....++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 22344667777888888888888888888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-12 Score=118.57 Aligned_cols=203 Identities=13% Similarity=0.014 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC--
Q 016027 181 VYNTVIDGLVEAGRFEEVS-GMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRG---------FLPS-- 248 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-- 248 (396)
.|...+..+...|+.++|. ++|++.....+ .+...|...+...-+.|+++.|.++|+.+.... ..|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 3333344444455555564 66666655432 344445555556666666666666666665421 0021
Q ss_pred ----------hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC
Q 016027 249 ----------PTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE-DKLDLAIQVSKEMKCRGCDI 317 (396)
Q Consensus 249 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 317 (396)
..+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+...+.- +-
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-AT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC
Confidence 2245555555555666666666666665541111223333222222232 33666666666666542 22
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHhccch
Q 016027 318 DLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVP--HYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 385 (396)
+...+...+......|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.+++.+..+
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555566666666666666666666666543211 224455555555666666666666666555433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-14 Score=134.24 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=150.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..+|+.++.++.+.|++++|++.|+++.+.. |.+..++..++.+|.+.|++++|++.|+++.+.+|. +...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 46799999999999999999999999999985 888999999999999999999999999999998765 7889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
|..+..++.+.|++++|++.|++.++.... +..++..+..++...|++++|++.|++.++.. +-+...+..+..++..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999887543 78899999999999999999999999999874 4567889999999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 016027 192 AGRFEEVSGMMERFLV 207 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~ 207 (396)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-12 Score=114.14 Aligned_cols=362 Identities=9% Similarity=-0.011 Sum_probs=238.5
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC---
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR--- 87 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 87 (396)
..+-+..|++.+.. .|. +..+|..++..+.+.+.++.+..+|+++... +|.....|...+..-.+.++
T Consensus 48 ~~d~i~~lE~~l~~--np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-----fP~~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-----FPLMANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp CSCHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTC--CCC
T ss_pred CHHHHHHHHHHHHH--CcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHhhCCcch
Confidence 33444556676664 343 5778999999888888999999999988886 48888888888888888888
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh--------hHHHHHHHHHHhC-CC-CCC-hhHHHHHHHHHHc
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV--------KDAERFWLEMRKE-NV-TPN-VVTYGTLVEGYCR 156 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~ 156 (396)
++.+..+|+++....+ ..|++..|...+....+.++. +.+.++|+..+.. |. .++ ...|...+.....
T Consensus 119 ~~~v~~lfeRal~~~~-~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 119 AAVIEPVLARCLSKEL-GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp HHHHHHHHHHHTCSSS-CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 8999999999887532 137888888877766665543 3344677766543 55 443 4567666655432
Q ss_pred ---------cCCHHHHHHHHHHHHHcCCCCCHHHHH--------------------------------------------
Q 016027 157 ---------LRRVDRAIRLVKEMRKEGIEPNAIVYN-------------------------------------------- 183 (396)
Q Consensus 157 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 183 (396)
.++.+.+.++|++++......-..+|.
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 334566777777766421111111111
Q ss_pred -----------------------------HHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 184 -----------------------------TVIDGLVEAG-------RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 184 -----------------------------~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
..+..-...+ ..+.+..+|++++...+ .....|...+..+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence 1111000000 01123344555544433 2455666666667778
Q ss_pred CChHHHH-HHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---------CCCC------------hh
Q 016027 228 GDLEGAS-KILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG---------YTPD------------RL 285 (396)
Q Consensus 228 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~ 285 (396)
|+.++|. ++|+..... .+.+...+...+......|+++.|..+|+.+.... -.|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888896 999999875 34466667778888888999999999999887631 0131 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 016027 286 TYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRM-YKFDEASAEFEDMIRRGLVPHYLTFKRLNDEF 364 (396)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 364 (396)
+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+..++. .+.+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 57777777778899999999999998751222344554444444444 4589999999999885 344666777888888
Q ss_pred HHcCCchHHHHHHHHHhccch
Q 016027 365 KKRGMTALAQKLCNVMSSVPR 385 (396)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~ 385 (396)
...|+.+.|..+|++.....+
T Consensus 515 ~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSS
T ss_pred HhCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=118.42 Aligned_cols=311 Identities=11% Similarity=-0.037 Sum_probs=196.7
Q ss_pred CchhHHHHHHHHH--HHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHH--HhcCChhHHH---------HHHHH
Q 016027 70 SGASLFEILLDSL--CKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGW--FRSKNVKDAE---------RFWLE 134 (396)
Q Consensus 70 ~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~--~~~~~~~~a~---------~~~~~ 134 (396)
++..+-..|-..| ...+++++|.++++++...-.....| ...|..++..- ...+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444455555555 66777777777777765433232223 33333333321 1112222222 55555
Q ss_pred HHhCCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 135 MRKENVTPNV----VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EP----NAIVYNTVIDGLVEAGRFEEVSGMMERF 205 (396)
Q Consensus 135 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 205 (396)
+.....+.+. ..+......+...|++++|+..+++..+... .+ ...++..+..+|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4332111010 1223345556778888888888888775410 11 2346677788888889998888888887
Q ss_pred HhcCCC------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 206 LVCEPG------PTMVTYTSLVKGYCKAGDLEGASKILKMMISR----GFL-PSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 206 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
.+.... ....++..+..+|...|++++|...+.+..+. +.. ....++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653111 12456778888888899999999888887653 111 1234677788888899999999999988
Q ss_pred HHH-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCC---hhHHHHHH
Q 016027 275 MIE-----SGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCD----IDLDTSTMLIHLLCRMYK---FDEASAEF 342 (396)
Q Consensus 275 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~---~~~a~~~~ 342 (396)
..+ .... ...++..+..++.+.|++++|...+++..+.... .....+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 876 3322 3667788888999999999999999998875221 123345556666777777 66777666
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 343 EDMIRRGLVPH-YLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 343 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
++ .+..|+ ...+..+...|...|++++|...+++.....
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 65 222233 3456678888999999999999999876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-14 Score=129.74 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=153.8
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.|.++.+++.++.+|.+.|++++|++.|+++.+.+|. +..+|+.+..++.+.|++++|+..|++.++.... +..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~ 80 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 80 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 4778899999999999999999999999999998766 7889999999999999999999999999987543 68899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA 227 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (396)
..+..++...|++++|++.|++.++.. +-+...+..+..++...|++++|+..|+++++..+. +...+..+..++...
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhc
Confidence 999999999999999999999999874 556889999999999999999999999999997664 678899999999999
Q ss_pred CChHHHHHHHHHHHH
Q 016027 228 GDLEGASKILKMMIS 242 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~ 242 (396)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=106.19 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++..+...|++++|.+.++++....|. +...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHH
Confidence 4567778888888888888888888887753 667778888888888888888888888888776433 66777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc
Confidence 778888888888888888888877663 2366677777777777888888888887777664 44566777777777777
Q ss_pred CCHHHHHHHHHHHHhc
Q 016027 193 GRFEEVSGMMERFLVC 208 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~ 208 (396)
|++++|...++++.+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=124.44 Aligned_cols=247 Identities=15% Similarity=0.113 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 016027 108 TVRVYNILLNGWFRSKNVKDAERFWLEMRKE-------NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE------G 174 (396)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 174 (396)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666667777777777777777766552 11223445556666666666666666666665543 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 016027 175 I-EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYN 253 (396)
Q Consensus 175 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 253 (396)
- +....++..+...+...|++++|...++++.+.... ......+.....+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------------------------VLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----------------------------HHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----------------------------hcCCCChHHHHHHH
Confidence 1 112334445555555555555555555555442100 00000011222344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCC-
Q 016027 254 YFFRYFSKFGKVEDAMNLYRKMIES------GYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKCRG-------CDID- 318 (396)
Q Consensus 254 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~- 318 (396)
.+...+...|++++|..+++++.+. +..| ...++..+..++...|++++|...++++.+.. ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444444445555555444444332 1011 12334445555555555555555555554320 0111
Q ss_pred ------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 319 ------LDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 319 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
...+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333444556666666666665532 334566778888888888888888888886554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-13 Score=116.98 Aligned_cols=310 Identities=10% Similarity=0.019 Sum_probs=211.3
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH--HHcCChHHHH---------HHHHHHhhc
Q 016027 35 TFVILIRRY--ARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL--CKQGRVKAAS---------EYFHKRKEL 101 (396)
Q Consensus 35 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~---------~~~~~~~~~ 101 (396)
.-..+-..| ...+++++|..+++++.+.........+...|..++..- ...+.+..+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334444444 789999999999998876432111123333344444431 1123333333 666665432
Q ss_pred cCCCCCCh--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 102 DQSWAPTV--RVYNILLNGWFRSKNVKDAERFWLEMRKENV-TP----NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 102 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.....+.. ..+......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|+..+++..+..
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11100111 1233455667789999999999999876411 12 24577889999999999999999999887631
Q ss_pred --C---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 016027 175 --I---E-PNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE----P-GPTMVTYTSLVKGYCKAGDLEGASKILKMMIS- 242 (396)
Q Consensus 175 --~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 242 (396)
. . ....++..+..+|...|++++|...+++..+.. . .....++..+..+|...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1 124567788899999999999999999887631 1 11245778899999999999999999999887
Q ss_pred ----CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 016027 243 ----RGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGY----TPDRLTYHILLKILCKEDK---LDLAIQVSKEMK 311 (396)
Q Consensus 243 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 311 (396)
.... ...++..+...+...|++++|...+++..+... +.....+..+...+...++ +.+|...+++..
T Consensus 252 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 252 SREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 4333 467888899999999999999999999877421 1123345666667777788 777777776632
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 312 CRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 312 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
. .+.....+..+...|...|++++|...|++..+
T Consensus 331 ~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 L--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112335667889999999999999999998865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-13 Score=115.21 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-h----hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC-
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-A----SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP- 107 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 107 (396)
..+...+..+...|++++|...++++.... +++ . .++..++..+...|++++|.+.++++....+....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEEL-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345566778888999999999999988753 222 1 25677788888999999999999988765332111
Q ss_pred --ChHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--
Q 016027 108 --TVRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVT--P-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-- 176 (396)
Q Consensus 108 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 176 (396)
...++..+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++..+....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 1233566778888899999999998887653 221 2 2345666778888889999999988888765311
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 016027 177 P--NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM-VTYT-----SLVKGYCKAGDLEGASKILKMMISRGFLPS 248 (396)
Q Consensus 177 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 248 (396)
+ ....+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+.........+.
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 1 2345667777888888888888888887654222111 1111 233446678888888888887765432211
Q ss_pred ---hhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 249 ---PTTYNYFFRYFSKFGKVEDAMNLYRKMIES----GYTPDR-LTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 249 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123456667777778888888877776542 111122 2455556667777788777777777664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-13 Score=107.53 Aligned_cols=206 Identities=10% Similarity=-0.038 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..+...+..+...|++++|+..|+++.... | ++..++..++.++...|++++|++.|+++...+|. +...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 78 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA 78 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence 6789999999999999999999999999975 5 78888888999999999999999999999987654 6788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNV-------VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP--NAIVY 182 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 182 (396)
|..+..++...|++++|+..|++..+..+. +. ..|..+...+...|++++|++.+++.++.. +. +...+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 156 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHH
Confidence 999999999999999999999999886432 44 457888888999999999999999998873 33 35677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 183 NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 183 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
..+..++...| ...++++...+. .+...|.... ....+.+++|...+++..+..+. +..+...+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 77777775544 444556555433 2344444333 33456689999999999987432 4444444433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-12 Score=112.00 Aligned_cols=307 Identities=11% Similarity=0.020 Sum_probs=212.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PNV---- 144 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~---- 144 (396)
..+.......+...|++++|...++++....+...+. ...++.+...+...|++++|...+++....... .+.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3455667778888999999999999988764321111 125667778888999999999999988653111 122
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----c
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIE--P-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP----T 213 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 213 (396)
.++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 23567788889999999999999988764 221 2 23456667888999999999999999988754321 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---h
Q 016027 214 MVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSP-TTYN-----YFFRYFSKFGKVEDAMNLYRKMIESGYTPD---R 284 (396)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 284 (396)
..++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 356777888899999999999999988754212111 1121 233447789999999999988776432211 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 016027 285 LTYHILLKILCKEDKLDLAIQVSKEMKCR----GCDIDL-DTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKR 359 (396)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 359 (396)
..+..+...+...|++++|...++++... +..++. ..+..+..++...|+.++|...+++...... . ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----cc
Confidence 24567778888999999999999987653 211122 3566677888899999999999998876310 0 11
Q ss_pred HHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 360 LNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 360 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
.+..+...| +....+++.+....+.
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 223344555 6677777776665553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=100.77 Aligned_cols=166 Identities=19% Similarity=0.115 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 455777788888888888888888887765433 66777888888888888888888888877663 23666777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE 231 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (396)
..+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHH
Confidence 78888888888888888777763 44666777777777778888888888877777644 35666777777777777777
Q ss_pred HHHHHHHHHHHC
Q 016027 232 GASKILKMMISR 243 (396)
Q Consensus 232 ~a~~~~~~~~~~ 243 (396)
+|...++.+.+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-13 Score=107.89 Aligned_cols=188 Identities=10% Similarity=0.015 Sum_probs=128.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
+...+..++..+.+.|++++|+..|+++.... |.+ +.++..++.++...|++++|+..|+++....|..+..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 47789999999999999999999999999874 444 7889999999999999999999999999986654444
Q ss_pred hHHHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 016027 109 VRVYNILLNGWFR--------SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAI 180 (396)
Q Consensus 109 ~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (396)
...+..+..++.. .|++++|+..|+++++..+. +......+.... .+... ...
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~--------------~~~~~----~~~ 149 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIR--------------ELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHH--------------HHHHH----HHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHH--------------HHHHH----HHH
Confidence 6678888888988 99999999999999876422 333332221110 00000 011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhc----------CChHHHHHHHHHHHHC
Q 016027 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTSLVKGYCKA----------GDLEGASKILKMMISR 243 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 243 (396)
.+..+..+|...|++++|+..|+++++..+.. ....+..+..+|... |++++|...++.+.+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 13444555666666666666666665543321 233455555555544 5566666666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-12 Score=102.12 Aligned_cols=208 Identities=13% Similarity=0.018 Sum_probs=161.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.++..+...+..+...|++++|++.|+++...+| +++...+..+..++...|++++|+..|++..+..+. +...+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHH
Confidence 45678899999999999999999999999998743 257778888999999999999999999999987543 677899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHH
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA-------IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTS 219 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 219 (396)
.+..++...|++++|+..+++..+.. +.+. ..+..+...+...|++++|+..|+++.+..+ . +...+..
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~ 158 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHH
Confidence 99999999999999999999999874 3344 4577888889999999999999999988643 2 3567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 220 LVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHIL 290 (396)
Q Consensus 220 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 290 (396)
+..+|...| ...++.+...+.. +...+.... ....+.+++|...+++..+..+. +..+...+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 887776544 4445565555322 444444433 33456789999999999987422 44444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=110.53 Aligned_cols=236 Identities=17% Similarity=0.118 Sum_probs=165.8
Q ss_pred hhhccCchhHHHHHHHHhCCC------CCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGH------EVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLF 75 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~ 75 (396)
....|++++|+..|+++++.. ..|. ...++..++..+...|++++|+..|+++...... .+.+....++
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPD--VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL 88 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345688888888888887621 1222 3668999999999999999999999999876211 1225567789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcc-----CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-C
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELD-----QSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE------NVTP-N 143 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~ 143 (396)
..++..+...|++++|.+.|+++.... +..+....++..+...+...|++++|...|+++.+. +..| .
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999999987652 112235678899999999999999999999998764 1122 3
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcC
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-------GIEPN-AIVYNTVIDGLVEAGR------FEEVSGMMERFLVCE 209 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~ 209 (396)
..++..+..++...|++++|..++++..+. ...+. ...+..+.......+. +..+...++.....
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD- 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-
Confidence 567888999999999999999999998764 11222 2233333333333222 23333333322211
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 016027 210 PGPTMVTYTSLVKGYCKAGDLEGASKILKMMISR 243 (396)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 243 (396)
......++..+..+|...|++++|...+++..+.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1224567888999999999999999999988753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-12 Score=101.29 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHH----------------HHHHHHHcCChHHHHHHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEI----------------LLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~ 96 (396)
...+...+..+...|++++|+..|+++.... |.++.++.. ++.+|...|++++|+..|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5567788888999999999999999999875 667777777 8888888888888888888
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC--HHHHHHHHHHHHHcC
Q 016027 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR--VDRAIRLVKEMRKEG 174 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 174 (396)
++.+.+|. +...+..+..++...|++++|+..|++.++..+. +..++..+..++...|+ ...+...++....
T Consensus 79 ~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-- 152 (208)
T 3urz_A 79 ELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-- 152 (208)
T ss_dssp HHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--
T ss_pred HHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--
Confidence 88887655 6778888888888888888888888888876433 66777777777765543 3344445544431
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 175 IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
..|....+.....++...|++++|+..|++.++.
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1222223344455566677888888888888774
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=111.45 Aligned_cols=235 Identities=11% Similarity=0.013 Sum_probs=166.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----CCCCCChHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD-----QSWAPTVRVYNI 114 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 114 (396)
....|++++|+..|+++...-.. .+.|....++..++..+...|++++|...++++.... +..+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34677888888888877764211 1225567789999999999999999999999988652 222335678899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC------C-CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C-CCCCHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE------N-VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE------G-IEPNAI 180 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 180 (396)
+...+...|++++|...|++.... . .+....++..+...+...|++++|..+++++.+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1224567888999999999999999999998875 1 122356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCC-chhhHHHHHHHHHhcCChHHHHH------HHHHHHHCCCC
Q 016027 181 VYNTVIDGLVEAGRFEEVSGMMERFLVCE-------PGP-TMVTYTSLVKGYCKAGDLEGASK------ILKMMISRGFL 246 (396)
Q Consensus 181 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~ 246 (396)
++..+..++...|++++|...++++.+.. ..+ ....+..+...+...+....+.. .+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 78888999999999999999999987641 112 23344444444444333333222 2221111 112
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 016027 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIES 278 (396)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 278 (396)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24567888999999999999999999988763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=99.75 Aligned_cols=144 Identities=8% Similarity=-0.050 Sum_probs=112.4
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.++...|++++|+..+..+++. .|+ ....+..++.+|.+.|++++|++.|+++.+.. |.++.+|..++.+|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERDPKAHRFLGLLY 75 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhccc--Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4567788999999988888874 343 24577888999999999999999999998875 78888999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCChhHHHHHHHHHHccCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERF-WLEMRKENVTPNVVTYGTLVEGYCRLRR 159 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (396)
...|++++|+..|+++.+.+|. +..+|..+...+.+.|++++|.+. +++..+..+. +..+|......+...|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPT---QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHcCchHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 9999999999999998887665 678888888889889988776655 4777765433 56677766666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-13 Score=122.08 Aligned_cols=133 Identities=9% Similarity=-0.021 Sum_probs=62.3
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+..++..++..+...|++++|++.|+++.+.+|. +...|..+..++...|++++|+..|++..+.... +...+.
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~ 505 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKL 505 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 334444444444444555555555555544444332 3444444444444455555555555444443221 334444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
.+..++.+.|++++ ++.|++.++.. +.+...+..+..++.+.|++++|+..|+++.+
T Consensus 506 ~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 506 ALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 44444445555554 44554444442 22344444444555555555555555554444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-12 Score=104.92 Aligned_cols=197 Identities=10% Similarity=-0.014 Sum_probs=108.9
Q ss_pred HHHHcCChHHHHHHHHHHhhccCCC--CC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--ChhHHHHHHH
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQSW--AP-TVRVYNILLNGWFRSKNVKDAERFWLEMRKENV---TP--NVVTYGTLVE 152 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 152 (396)
.|...|++++|.+.|+++....+.. .+ ...+|+.+..+|.+.|++++|+..|++..+... .+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666554432211 11 134566666666666666666666665543210 00 1345666666
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch------hhHHHH
Q 016027 153 GYCRL-RRVDRAIRLVKEMRKEGIE-PN----AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTM------VTYTSL 220 (396)
Q Consensus 153 ~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 220 (396)
.|... |++++|+..|++.++.... .+ ..++..+...+.+.|++++|+..|+++.+..+.... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77664 7777777777766553100 01 245666677777777777777777777765433221 145566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-C---hhhHHHHHHHHh--ccCCHHHHHHHHHHHHH
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFLP-S---PTTYNYFFRYFS--KFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 277 (396)
..++...|++++|...+++..+..+.. + ...+..++.++. ..+++++|+..|+.+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 667777777777777777766542110 1 112333444443 45567777777765543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=101.61 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=133.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHH----------------HHHHHHHcCCHHHHHHHHHHHhhccccc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVI----------------LIRRYARAGMVEAAIWTFEFANNLDMVK 66 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 66 (396)
..+...|++++|+..|.++++. .|+ +..+|.. ++.++...|++++|+..|+++.+..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 84 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--- 84 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---
Confidence 3567899999999999999984 454 3567888 9999999999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCh
Q 016027 67 NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN--VKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 144 (396)
|.++.++..++.++...|++++|...|+++...+|. +..+|..+..++...|+ ...+...++.... ..|..
T Consensus 85 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 85 --PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 888999999999999999999999999999998765 78899999988876654 4455666665542 23333
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
..+.....++...|++++|+..|++.++. .|+......+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 44555666777789999999999999876 56765444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-13 Score=97.57 Aligned_cols=146 Identities=14% Similarity=-0.003 Sum_probs=117.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
|+.++...|++++|+..++.+.... |.++..+..++..|.+.|++++|++.|+++.+.+|. +..+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-----p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-----RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-----HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 5667778899999999999988864 666777888999999999999999999999988765 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 119 WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRL-VKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
+.+.|++++|+..|++..+..+. +..++..+...+.+.|++++|.+. +++..+.. |-++.+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999887533 678888899999999988776654 57777763 4466777777776666664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=100.76 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=153.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-ChhH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-P-NVVT 146 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~ 146 (396)
+.++..+..++..+.+.|++++|...|+++....|..+.....+..+..++.+.|++++|+..|++..+..+. | ...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 6677888899999999999999999999999876553222678888999999999999999999999886321 1 2456
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 016027 147 YGTLVEGYCR--------LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYT 218 (396)
Q Consensus 147 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (396)
+..+..++.. .|++++|+..|+++++.. +.+......+.. +..+.. .....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 7778888888 899999999999988873 222222222111 111110 0112356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhcc----------CCHHHHHHHHHHHHHCCCCCC--h
Q 016027 219 SLVKGYCKAGDLEGASKILKMMISRGFLP--SPTTYNYFFRYFSKF----------GKVEDAMNLYRKMIESGYTPD--R 284 (396)
Q Consensus 219 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~--~ 284 (396)
.+..+|.+.|++++|+..|+.+.+..+.. ....+..+..+|... |++++|...|+++.+..+... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 78889999999999999999998864321 245677788888766 899999999999988642211 2
Q ss_pred hhHHHHHHHHHhcCCHHHH
Q 016027 285 LTYHILLKILCKEDKLDLA 303 (396)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~a 303 (396)
.....+...+...++++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3445555556665555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=96.46 Aligned_cols=192 Identities=13% Similarity=0.022 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+.+.|++++|+..|+++....+ ..+....++..++.++.+.|++++|+..|+++.+..|....-...+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 55788888999999999999999999988631 1122346788889999999999999999999988766532222345
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 113 NILLNGWFR------------------SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 113 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
..+..++.. .|++++|...|+++++..+. +...+....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH----
Confidence 555555544 45667777777776665221 222222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 016027 175 IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT--MVTYTSLVKGYCKAGDLEGASKILKMMISRGF 245 (396)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 245 (396)
......+...+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456778899999999999999988755422 35678889999999999999999998888743
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=118.50 Aligned_cols=185 Identities=10% Similarity=-0.057 Sum_probs=151.6
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHh--------hccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRK--------ELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENV 140 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (396)
|.++..+.... ...|++++|++.++++. ..+|. +...+..+...+...|++++|+..|+++.+...
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSE---SVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccccc---chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 55555555555 67899999999999988 65443 778899999999999999999999999988754
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSL 220 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 220 (396)
. +...|..+..++...|++++|++.|++.++.. +.+...+..+..++.+.|++++ +..|+++.+.++. +...|..+
T Consensus 465 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~l 540 (681)
T 2pzi_A 465 W-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGL 540 (681)
T ss_dssp C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHH
Confidence 3 77899999999999999999999999999874 4567888899999999999999 9999999987664 67889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 016027 221 VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGK 264 (396)
Q Consensus 221 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (396)
..++.+.|++++|...|++..+.+.. +...+..+..++...+.
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999999999999999999886422 46677778888766555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-12 Score=104.61 Aligned_cols=215 Identities=9% Similarity=-0.041 Sum_probs=153.3
Q ss_pred CchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC-chhHHHHHHHHHHHcCCh
Q 016027 10 EFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS-GASLFEILLDSLCKQGRV 88 (396)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 88 (396)
++++|...|.++ +..|...|++++|+..|+++.......+.++ ...++..++.+|...|++
T Consensus 32 ~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 477776666554 5567888999999999998887644333344 467889999999999999
Q ss_pred HHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-C----hhHHHHHHHHHHccCC
Q 016027 89 KAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRS-KNVKDAERFWLEMRKENVTP-N----VVTYGTLVEGYCRLRR 159 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~ 159 (396)
++|+..|+++....+.... ...+++.+...|... |++++|+..|++..+..... + ..++..+...+...|+
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 9999999988766543211 245788889999986 99999999999887642110 1 3568888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHH--hc
Q 016027 160 VDRAIRLVKEMRKEGIEPNA------IVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPT----MVTYTSLVKGYC--KA 227 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~ 227 (396)
+++|+..|++..+....... ..+..+..++...|++++|...|++..+..+... ...+..++.++. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999999998886422221 1567778888899999999999999887533211 113444556664 34
Q ss_pred CChHHHHHHHHHHHH
Q 016027 228 GDLEGASKILKMMIS 242 (396)
Q Consensus 228 ~~~~~a~~~~~~~~~ 242 (396)
+++++|+..|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 567888888776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-12 Score=96.70 Aligned_cols=164 Identities=14% Similarity=0.083 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+...+..+.+.|++++|+..|+++.+.. |.++.++..++.++...|++++|+..|+++...+| +...+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-----QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----DNSYKS 77 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-----HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----ChHHHH
Confidence 357778888888999999999999888875 77788888888999999999999999988876643 333333
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Q 016027 114 ILLNG-WFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEP-NAIVYNTVIDGLVE 191 (396)
Q Consensus 114 ~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 191 (396)
.+... +...++...|+..+++..+..+. +...+..+..++...|++++|+..|+++.+....+ +...+..+..++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 22222 22333344578888888776433 67788888888888999999999998888774222 35577888888888
Q ss_pred cCCHHHHHHHHHHHHh
Q 016027 192 AGRFEEVSGMMERFLV 207 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~ 207 (396)
.|+.++|...|++.+.
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 8998888888887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-11 Score=86.50 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+|..++..+...|++++|+.+|+++.+.. |.+..++..++..+...|++++|..+++++....+. +...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHH
Confidence 56777778888888888888888777653 556677777777787888888888888877765432 5566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+...+...|++++|...++++..... .+...+..+...+...|++++|...++++.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777766532 25566666777777777777777777776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-10 Score=90.24 Aligned_cols=228 Identities=10% Similarity=0.013 Sum_probs=170.4
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC--ChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 39 LIRRYARAGMV-EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG--RVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 39 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
.+.+..+.|.. ++|++++++++..+ |.+..+|+.-..++...| +++++++.++.+...+|. +..+|+.-
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-----P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R 109 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-----ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYR 109 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-----cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHH
Confidence 33444455555 68999999999986 888888999999998888 999999999999987665 66677765
Q ss_pred HHHH----Hhc---CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 116 LNGW----FRS---KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD--RAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 116 ~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
...+ ... +++++++.+++++.+...+ +..+|+.-..++.+.|.++ ++++.++.+++.. +-|...|+...
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5555 444 7888999999999887544 7788888777777788877 8888888888875 45667777666
Q ss_pred HHHHHcCC------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCChhhHHHHHH
Q 016027 187 DGLVEAGR------FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG-ASKILKMMISRG--FLPSPTTYNYFFR 257 (396)
Q Consensus 187 ~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~ 257 (396)
.++...+. ++++++.+++++...+. +...|+.+...+.+.|+... +..+..++.+.+ .+.++..+..++.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 66666666 78888888888887663 77788888777777777443 445555554432 1236667777777
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 016027 258 YFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~ 277 (396)
++.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 77777888888888887765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-09 Score=94.80 Aligned_cols=347 Identities=12% Similarity=0.004 Sum_probs=212.6
Q ss_pred cCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH----
Q 016027 9 KEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM-VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC---- 83 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 83 (396)
|+++.|..+|++++.. .|+ ...|...+....+.|. .+....+|+.+...-. ..+.+..+|...+..+.
T Consensus 28 ~~~e~~~~iferal~~--~ps---~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg--~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYN---LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE--NYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCC---HHHHHHHHHHHHHHC----CTHHHHHHHHHHST--TCTTCHHHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHHHHHhcc--CCC---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC--CCcccHHHHHHHHHHHHhchh
Confidence 6788888888888874 344 7788888887777663 3556777777776421 12456677777777654
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhc-------------CChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRS-------------KNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
..++.+.+.++|+++... |. ..-...|......-... +.+..|..+++.+...-...+...|...
T Consensus 101 ~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y 178 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL 178 (493)
T ss_dssp HHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 345677888888888764 21 11122333333221111 1233344444444321001133355555
Q ss_pred HHHHHccC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 151 VEGYCRLR--R-----VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 151 ~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... + .+...+. .
T Consensus 179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~ 251 (493)
T 2uy1_A 179 IDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----Y 251 (493)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----H
T ss_pred HHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----H
Confidence 54432211 0 345677888888763 556778888888888899999999999999987 3 2333332 2
Q ss_pred HHhcCChHHHHHHHHHHHHCC------------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRG------------FLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
|....+.++. ++.+.+.- .......|...+....+.++.+.|..+|.++ .. ...+...|...+
T Consensus 252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A 326 (493)
T 2uy1_A 252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCA 326 (493)
T ss_dssp HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHH
T ss_pred HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHH
Confidence 2222222222 22222110 0111245666667776778899999999998 32 123444454333
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Q 016027 292 KILCKE-DKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMT 370 (396)
Q Consensus 292 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 370 (396)
..-... ++.+.|..+|+...+..+. ++..+...+......|+.+.|..+|+++. .....|...+.--...|+.
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 322233 3699999999999886432 45667777888888999999999999872 2567788888777788999
Q ss_pred hHHHHHHHHHhc
Q 016027 371 ALAQKLCNVMSS 382 (396)
Q Consensus 371 ~~A~~~~~~~~~ 382 (396)
+.+.+++++...
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.5e-10 Score=91.22 Aligned_cols=238 Identities=10% Similarity=0.021 Sum_probs=191.4
Q ss_pred hhhccCc-hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 5 LAKAKEF-DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG--MVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 5 ~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
..+.|.+ ++|+.++..++.. .|+ ...+|+.-..++...| ++++++++++.+.... |.+..+|+.-..+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~--nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-----Pk~y~aW~~R~~i 112 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINE--LAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-----EKNYQIWNYRQLI 112 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-----TTCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-----cccHHHHHHHHHH
Confidence 3445555 6899999999984 566 3669999999999999 9999999999999975 8888899888777
Q ss_pred H----HHc---CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 82 L----CKQ---GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK--DAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 82 ~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
+ ... +++++++++++++...+|. +..+|+.-.-.+.+.|+++ ++++.++++++..+. |..+|+.-..
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pk---ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ 188 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPK---NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 7 666 7899999999999998665 8889998888888889988 999999999998655 8888988877
Q ss_pred HHHccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC--CCCchhhHHHHHHH
Q 016027 153 GYCRLRR------VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE-VSGMMERFLVCE--PGPTMVTYTSLVKG 223 (396)
Q Consensus 153 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~ 223 (396)
.....+. ++++++.++.++... +-|...|+.+...+.+.|+... +..+..++...+ ...+...+..++.+
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 7777776 899999999999885 6688888888888888887444 556777666543 12467888999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYFF 256 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 256 (396)
|.+.|+.++|.++++.+.+.--+.....|+..+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999998741122444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=94.30 Aligned_cols=244 Identities=7% Similarity=-0.005 Sum_probs=165.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
++-..-.|++..++.-. .+..+. . ....-.-+.++++..|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~-~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKV-T-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCC-C-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT
T ss_pred HHHHHHhhHHHHHHHHH---HhcCcc-c-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc
Confidence 34455679998888743 333221 1 223333455778888887742 12334444555444443 322
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHhcCChHHHHHHH
Q 016027 159 RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP-GPTMVTYTSLVKGYCKAGDLEGASKIL 237 (396)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 237 (396)
|+..++++.+.+ .++..++..+..++...|++++|++++.+.+..++ .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677888777665 45566666788889999999999999999877654 236778888889999999999999999
Q ss_pred HHHHHCCCCC-----ChhhHHHHHHHH--hc--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 016027 238 KMMISRGFLP-----SPTTYNYFFRYF--SK--FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSK 308 (396)
Q Consensus 238 ~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 308 (396)
+.|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 999875 44 345556666553 22 33889999999998665 3453333444448888999999999998
Q ss_pred HHHHcC---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 309 EMKCRG---------CDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 309 ~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
.+.+.. -+-++.+...+|......|+ +|.++++++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 766531 02366777666666666776 888899888875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-10 Score=90.82 Aligned_cols=246 Identities=9% Similarity=0.031 Sum_probs=171.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++-..-.|++..++.-..++... .+ ......+.++|...|++... . ...|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~------~~-~~~~~~~~Rs~iAlg~~~~~---------~--~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV------TD-NTLLFYKAKTLLALGQYQSQ---------D--PTSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC------CC-HHHHHHHHHHHHHTTCCCCC---------C--SSSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc------ch-HHHHHHHHHHHHHcCCCccC---------C--CCCHHHHHHHHHHHHh
Confidence 45566789999888743322211 22 23455577899999988742 1 2234544555554443
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI-EPNAIVYNTVIDGLVEAGRFEEV 198 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 198 (396)
..+ |+..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 322 788888887765 45666667888999999999999999999877652 23667778888999999999999
Q ss_pred HHHHHHHHhcCCCC-----chhhHHHHHHHH--HhcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHH
Q 016027 199 SGMMERFLVCEPGP-----TMVTYTSLVKGY--CKAG--DLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAM 269 (396)
Q Consensus 199 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 269 (396)
.+.+++|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 9999999875 34 355556666553 3334 899999999998765 345334444555888999999999
Q ss_pred HHHHHHHHCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016027 270 NLYRKMIESG---------YTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGC 315 (396)
Q Consensus 270 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (396)
+.++.+.+.. -+-++.++..++......|+ +|.++++++....+
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 9999766531 02356666566666666786 88999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-11 Score=92.43 Aligned_cols=165 Identities=11% Similarity=0.026 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|...|+++...+|+ +...+..+...+...|++++|+..|++..... |+...+..+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~ 80 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIA 80 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHH
Confidence 345677888999999999999999999887665 78889999999999999999999999887653 3444333322
Q ss_pred HH-HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCC
Q 016027 152 EG-YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCKAGD 229 (396)
Q Consensus 152 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 229 (396)
.. +...+....|+..+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+..++...|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 22 122233345678888887763 4467788888888888999999999998888866543 35678888888888888
Q ss_pred hHHHHHHHHHHHH
Q 016027 230 LEGASKILKMMIS 242 (396)
Q Consensus 230 ~~~a~~~~~~~~~ 242 (396)
.++|...|++...
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888877653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=92.06 Aligned_cols=190 Identities=7% Similarity=-0.041 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNV--VTYG 148 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 148 (396)
++..+..++..+...|++++|+..|+++....|..+.....+..++.++.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34567778899999999999999999999876553333567888999999999999999999999886433111 2444
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 016027 149 TLVEGYCR------------------LRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 149 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 210 (396)
.+..++.. .|++++|+..|+++++.. +-+........... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 45555543 345566666666665542 11111111111000 000000
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 016027 211 GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP--SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESG 279 (396)
Q Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 279 (396)
......+...|.+.|++++|...|+.+.+..+.. ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778999999999999999999874221 12568889999999999999999999988874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=110.96 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=122.9
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR 87 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (396)
.|++++|+..|+++++. .|+ +..++..++..+...|++++|++.|+++.+.. |.+..++..++.+|...|+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-----PGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp ---------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-----TTCHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC
Confidence 58999999999999875 454 46799999999999999999999999999975 7889999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHcc---CCHHHHH
Q 016027 88 VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRL---RRVDRAI 164 (396)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~ 164 (396)
+++|.+.++++.+.+|. +...+..+..++.+.|++++|.+.|++..+.... +...+..+..++... |++++|.
T Consensus 73 ~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999988654 6889999999999999999999999999887533 678889999999999 9999999
Q ss_pred HHHHHHHHcC
Q 016027 165 RLVKEMRKEG 174 (396)
Q Consensus 165 ~~~~~~~~~~ 174 (396)
+.+++..+.+
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-11 Score=99.06 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH-
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV- 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 111 (396)
...+..++..+.+.|++++|+..|+++.... |.++.++..++..+...|++++|...++++...+| +...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----~~~~~ 187 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----DTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----SHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----chHHH
Confidence 3455566666666666666666666666553 55556666666666666666666666666554422 2221
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDGLV 190 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 190 (396)
.......+...++.++|...+++.....+ .+...+..+...+...|++++|+..|+++.+.... .+...+..++..+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 22222234445555555555555555432 24555555555666666666666666655554211 11344555555555
Q ss_pred HcCCHHHHHHHHHHH
Q 016027 191 EAGRFEEVSGMMERF 205 (396)
Q Consensus 191 ~~~~~~~a~~~~~~~ 205 (396)
..|+.++|...+++.
T Consensus 267 ~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 267 ALGTGDALASXYRRQ 281 (287)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-10 Score=84.21 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
++..++..+...|++++|.++++++...++. +...+..++..+...|++++|...++++...+. .+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHH
Confidence 4566777777777777777777777665332 566677777777777777777777777766532 245566666777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 154 YCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
+...|++++|.++++.+.+.. +.+...+..+..++...|++++|...++++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777766653 334556666666666677777777776666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-10 Score=89.08 Aligned_cols=177 Identities=10% Similarity=-0.033 Sum_probs=123.3
Q ss_pred hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC----Ch
Q 016027 13 SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG----RV 88 (396)
Q Consensus 13 ~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~ 88 (396)
+|++.|.+..+. -+ ..++..++..+...+++++|+.+|+++.+. .++.++..|...|.. + ++
T Consensus 4 eA~~~~~~aa~~---g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GD---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GDGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp CTTHHHHHHHHT---TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHTTS-STTSCCH
T ss_pred hHHHHHHHHHHC---CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHc-CCCCCCH
Confidence 466677777663 22 557888888888888888888888888764 356677777777777 6 78
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHHHc----cCC
Q 016027 89 KAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKENVT-PNVVTYGTLVEGYCR----LRR 159 (396)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~ 159 (396)
++|.++|+++... + +...+..|...|.. .+++++|+..|++..+.|.. .+..++..|...|.. .++
T Consensus 70 ~~A~~~~~~A~~~--g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 70 PQARQLAEKAVEA--G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHHHHHHHHHHT--T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 8888888887654 3 66677777777776 67888888888887776521 025667777777776 667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 016027 160 VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-G-----RFEEVSGMMERFLVCEP 210 (396)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 210 (396)
+++|+.+|++..+. +.+...+..+..+|... | ++++|...|++..+.|.
T Consensus 145 ~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 145 DVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77888888777766 22444556666666543 2 67777777777776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-10 Score=106.48 Aligned_cols=156 Identities=8% Similarity=-0.031 Sum_probs=123.3
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCCh
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNV 125 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (396)
.|++++|++.|+++.+.. |.+..++..++..+...|++++|.+.|+++.+.+|. +...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence 478999999999998875 778899999999999999999999999999987654 688999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHH
Q 016027 126 KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA---GRFEEVSGMM 202 (396)
Q Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 202 (396)
++|.+.|++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 74 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999887533 67899999999999999999999999999874 45678888999999999 9999999999
Q ss_pred HHHHhcCCC
Q 016027 203 ERFLVCEPG 211 (396)
Q Consensus 203 ~~~~~~~~~ 211 (396)
++..+.++.
T Consensus 152 ~~al~~~p~ 160 (568)
T 2vsy_A 152 RAAVAQGVG 160 (568)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhcCCc
Confidence 999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-10 Score=95.12 Aligned_cols=165 Identities=12% Similarity=0.055 Sum_probs=76.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+...+..++..+...|++++|...|+++...+|+ +...+..+...+.+.|++++|...++++.... |+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHH
Confidence 333444445555555555555555555555554433 44455555555555555555555555544332 2222111
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHh
Q 016027 149 -TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYCK 226 (396)
Q Consensus 149 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 226 (396)
.....+...++.++|+..+++..+.. +.+...+..+..++...|++++|+..|.++++..+.. +...+..++..+..
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 11122334444444555555544442 3344444455555555555555555555555443321 13444455555555
Q ss_pred cCChHHHHHHHHH
Q 016027 227 AGDLEGASKILKM 239 (396)
Q Consensus 227 ~~~~~~a~~~~~~ 239 (396)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 5555555444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-10 Score=87.36 Aligned_cols=176 Identities=10% Similarity=-0.028 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC----Chh
Q 016027 51 AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK----NVK 126 (396)
Q Consensus 51 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 126 (396)
+|++.|+++.+. .++.++..+...|...+++++|.++|+++... + +...+..+...|.. + +++
T Consensus 4 eA~~~~~~aa~~-------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g---~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEA-------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--G---DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHC-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHc-CCCCCCHH
Confidence 355666666553 35566777777777777777777777777654 3 55666666666666 5 677
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHH
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEGIE-PNAIVYNTVIDGLVE----AGRFEE 197 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 197 (396)
+|.+.|++..+.| +..++..|...|.. .+++++|+++|++..+.|.. ..+..+..+..+|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777776654 55566666666665 66777777777777666421 114556666666666 566777
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKA-G-----DLEGASKILKMMISRG 244 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 244 (396)
|+..|++..+.+ .+...+..+..+|... | ++++|...|+...+.|
T Consensus 148 A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777777766541 2333455555555432 2 5666666666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=96.67 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=78.8
Q ss_pred hccCchhHHHHHHHHhCCCC------CCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC-CchhHHHHH
Q 016027 7 KAKEFDSAWCLLLDKIGGHE------VPDFV-SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD-SGASLFEIL 78 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~------~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l 78 (396)
..|++++|..++.++.+... .++.. ....|...+..|...|++++|+..|.++.......+.+ ....++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46888999998887654211 11100 01244455555666666666666666665543211101 113345555
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCCC-CC--ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----ChhHHHHH
Q 016027 79 LDSLCKQGRVKAASEYFHKRKELDQSW-AP--TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP-----NVVTYGTL 150 (396)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 150 (396)
+.+|...|++++|+..|+++....+.. .+ ...+++.+...|.. |++++|+..|++........ ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 666666666666666666554431110 00 12344445555544 55555555555544321000 02334444
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
...+...|++++|+..|++..+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-10 Score=80.76 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++++|++.|+++++.. |.++.+|..++.++.+.|++++|++.|+++.+.+|. +...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHH
Confidence 5688899999999999999999999999875 888899999999999999999999999999988655 77889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
..+..++...|++++|++.|++.++..+. +...+..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 99999999999999999999998886432 4555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=89.73 Aligned_cols=100 Identities=13% Similarity=0.029 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..++..++..+.+.|++++|+..|+++...+ |.++..|..++.+|...|++++|+..|+++...+|. +...
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHH
Confidence 35677888888888888888888888888775 777788888888888888888888888888877655 6677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
|..+..++...|++++|...|++..+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888888888888877753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-10 Score=94.61 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=73.7
Q ss_pred HcCCHHHHHHHHHHHhhccccc--CCCCc----hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHH
Q 016027 45 RAGMVEAAIWTFEFANNLDMVK--NFDSG----ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNIL 115 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l 115 (396)
..|++++|.++++++.+..... ...++ ...|...+..|...|++++|...|.++....+.... -..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578889999999887753210 00111 123444455555556666666665555443211100 12345555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKE----NVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGI---EP--NAIVYNTV 185 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 185 (396)
...|...|++++|+..|++..+. |-.. ...++..+..+|.. |++++|+..|++.++... .+ ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55555555555555555554322 1000 12234444444444 555555555544443210 00 02233344
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 016027 186 IDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~ 206 (396)
..++.+.|++++|+..|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=82.31 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=91.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..|.+.|++++|+..|.++++. .|+ +..+|..++.++...|++++|+..|+++++.+ |.++.+|..++.++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKR--DPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-----SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHH
Confidence 4678899999999999999984 455 47799999999999999999999999999986 88899999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
...|++++|++.|+++.+.+|. +...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~---~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS---NEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC---CHHHHHHHHH
Confidence 9999999999999999998765 6666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-08 Score=83.29 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=141.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
+..+-......+..++|++++++++..+ |.+..+|+.-..++...| .++++++.++.+...+|. +..+|+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-----P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~h 128 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-----PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHH 128 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHH
Confidence 3344444445556678999999999986 888889999988888888 599999999999987655 7888888
Q ss_pred HHHHHHhc-C-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHH
Q 016027 115 LLNGWFRS-K-NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD--------RAIRLVKEMRKEGIEPNAIVYNT 184 (396)
Q Consensus 115 l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 184 (396)
-...+... + ++++++++++++.+...+ |..+|+.-.-.+.+.+.++ ++++.++++++.. +-|...|+.
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777776 6 889999999999987644 7788877666666666665 8888888888875 457777777
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 185 VIDGLVEAGR-------FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 185 l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...++.+.+. ++++++.+++++...+. +...|+.+-..+.+.|..
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 7777777765 67888888888877663 777777766666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=95.28 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++.+|...|++++|.+.++++...+|. +...+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 5688899999999999999999999999875 778899999999999999999999999999987654 77889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
..+..++...|++++|...|++..+.... +...+...+....+. .++.. +........+.+......+... ..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~ 148 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IA 148 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HH
Confidence 99999999999999999999988765311 111111111111111 11111 1222223334444444444332 26
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA-GDLEGASKILKMMISR 243 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 243 (396)
|++++|++.++...+..+ .+......+...+.+. +.+++|..+|..+.+.
T Consensus 149 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888888776533 2333344444444444 5577888888777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=85.76 Aligned_cols=124 Identities=12% Similarity=-0.036 Sum_probs=82.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+...|++++|+..|.+++. |+ ..++..++.++...|++++|+..|+++.... |.+..++..++.++.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~----~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQD----PH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-----KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSS----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcC----CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHH
Confidence 45566777777777766642 33 5577777777777777777777777777664 566667777777777
Q ss_pred HcCChHHHHHHHHHHhhccCCCC------------C-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWA------------P-TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..|++++|.+.|+++....+... | ....+..+..++...|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777777766543311 1 12566667777777777777777777776653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-09 Score=81.21 Aligned_cols=130 Identities=16% Similarity=0.052 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|.+.++++...+|. +...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHH
Confidence 4477888888999999999999999888874 677888888999999999999999999988887543 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH--HHHHHHHccCCHHHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG--TLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
..+..++...|++++|...|++..+.... +...+. ..+..+...|++++|++.+....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888889999999988888776432 444443 33334667788888887776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-10 Score=85.33 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=98.2
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH-H
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS-L 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 82 (396)
.+...|++++|+..+.+++.. .|+ +..+|..++.++...|++++|+..|+++.... |.++.++..++.+ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~--~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA--NPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLY 89 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH--CCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHh--CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHH
Confidence 356778899999888888874 344 36788899999999999999999999988875 6778888888888 7
Q ss_pred HHcCCh--HHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 83 CKQGRV--KAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 83 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
...|++ ++|...|+++...+|. +...+..+...+...|++++|...|+++.+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HhcCCcchHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 788888 9999999998887554 67788888888999999999999999888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-07 Score=83.38 Aligned_cols=310 Identities=9% Similarity=-0.041 Sum_probs=196.6
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHHHhhcccccCCCCc--hhHHHHHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA----RAGMVEAAIWTFEFANNLDMVKNFDSG--ASLFEILLDSLCK 84 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 84 (396)
.+....+|+.++..- .++..+...|...+..+. .+|+.+.+..+|+++... |.. ..+|......-..
T Consensus 64 ~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~------P~~~~~~lw~~Y~~fE~~ 136 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQF-ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT------PMGSLSELWKDFENFELE 136 (493)
T ss_dssp --CTHHHHHHHHHHS-TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS------CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC------hhhhHHHHHHHHHHHHHH
Confidence 355667788777642 122235789988888775 357889999999999984 332 2233333222111
Q ss_pred c-------------CChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC-C------hhHHHHHHHHHHhCCCCCCh
Q 016027 85 Q-------------GRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK-N------VKDAERFWLEMRKENVTPNV 144 (396)
Q Consensus 85 ~-------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~------~~~a~~~~~~~~~~~~~~~~ 144 (396)
. +.+..|..+++.+...-+. .+...|...+..-...+ . .+.+..+|++++... +.+.
T Consensus 137 ~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~ 213 (493)
T 2uy1_A 137 LNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAE 213 (493)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred hccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCH
Confidence 1 2233445555555443111 24446666665533221 1 345778999988764 4468
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------CCC
Q 016027 145 VTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE------------PGP 212 (396)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~ 212 (396)
..|...+..+...|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.- ...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 88998999999999999999999999988 444333322 2222111121 22222110 011
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKF-GKVEDAMNLYRKMIESGYTPDRLTYHILL 291 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (396)
....|...+....+.++.+.|..+|+.. .. ...+...|...+..-... ++.+.|..+|+...+.. +-++..+...+
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yi 361 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 2356777777777788899999999999 32 223444454333322223 36999999999988863 22345566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 292 KILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
......|+.+.|..+|+.+. . ....|...+..-...|+.+.+.+++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~----k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE----K-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC----C-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH----H-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788999999999999973 1 577888888887888999999999988874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-10 Score=82.78 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=94.9
Q ss_pred HHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHH
Q 016027 16 CLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYF 95 (396)
Q Consensus 16 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 95 (396)
..|.+++.. .|+ +..++..++..+.+.|++++|+..|+++.... |.++.++..++.++...|++++|++.|
T Consensus 8 ~~~~~al~~--~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 8 GTIAMLNEI--SSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----HYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CSHHHHTTC--CHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcC--CHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345666663 344 36688899999999999999999999999875 788899999999999999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 96 HKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+++...+|. +...+..+..++...|++++|...|++..+.
T Consensus 79 ~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 79 SYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988655 6778889999999999999999999998875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=92.16 Aligned_cols=203 Identities=10% Similarity=-0.073 Sum_probs=147.8
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHH-------HHHHHHcCCHHHHHHHHHHHhhccccc-----C-C-----
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVIL-------IRRYARAGMVEAAIWTFEFANNLDMVK-----N-F----- 68 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~----- 68 (396)
..+++..|.+.|.++... .|+ ..++|..+ ..++.+.++..+++..+.+.....+.. + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--Chh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 578999999999999884 555 36799988 788888888888888888887743211 0 0
Q ss_pred -----CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 69 -----DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 69 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
.....+...++..+...|++++|.++|+.+...+|+ +. ....+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE---HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 111345666788888999999999999888765332 23 66667778889999999999998665431 111
Q ss_pred --hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 016027 144 --VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN--AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTS 219 (396)
Q Consensus 144 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (396)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....+. ...+..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~a 246 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHH
Confidence 33677788888999999999999998875433243 345666777888899999999999999886553 444443
Q ss_pred H
Q 016027 220 L 220 (396)
Q Consensus 220 l 220 (396)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=84.79 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=85.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+...+..++..+.+.|++++|...|+++...+|. +...|..+..++...|++++|+..|++..+..+. +...|.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 667778888888888899999999999998887665 7788888888888899999999999888876533 677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.+..++...|++++|+..|++.++..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888773
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-08 Score=81.97 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=93.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHH
Q 016027 121 RSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA-G-RFEE 197 (396)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 197 (396)
+.+..++|++++++++..++. +..+|+.--..+...+ .+++++++++.++... +-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344445677777777665433 4555666555555556 4667777777666653 44555666555555554 5 5666
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC-----
Q 016027 198 VSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLE--------GASKILKMMISRGFLPSPTTYNYFFRYFSKFGK----- 264 (396)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 264 (396)
++.+++++.+..+. +..+|+.-.-++.+.|.++ ++++.++++.+.++. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 66666666665442 5556655555554444444 555555555555433 55555555555555443
Q ss_pred --HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 016027 265 --VEDAMNLYRKMIESGYTPDRLTYHILLKILCKE 297 (396)
Q Consensus 265 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (396)
++++++.+.++....+. |...|+.+-..+.+.
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 34555555555544322 444444444333333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.9e-09 Score=80.68 Aligned_cols=128 Identities=9% Similarity=-0.075 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..++..+...|++++|+..|+++. ++++.++..++..+...|++++|++.|+++...+|. +...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHH
Confidence 56678888889999999999998773 336778899999999999999999999998887544 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC---------------ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTP---------------NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+..++...|++++|+..|++..+..... ....+..+..++...|++++|...++...+.
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999888753221 1256677777777777777777777777765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-09 Score=85.11 Aligned_cols=209 Identities=11% Similarity=-0.035 Sum_probs=153.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHH-------HHHHHHcCChHHHHHHHHHHhhccCCCCC-
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEIL-------LDSLCKQGRVKAASEYFHKRKELDQSWAP- 107 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 107 (396)
....+..+ ..++...|.+.|.++...+ |.....|..+ ...+...++..+++..+.......|+.-.
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~d-----P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYD-----ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhC-----hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 33444455 6899999999999999986 8889999988 68888888888888888887765332110
Q ss_pred --C---------------hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 016027 108 --T---------------VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEM 170 (396)
Q Consensus 108 --~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 170 (396)
+ ...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..++..
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 1 2334556777888999999999999887654 43336666777888999999999999855
Q ss_pred HHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 016027 171 RKEGIEPN--AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP--TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFL 246 (396)
Q Consensus 171 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (396)
.... .|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~-- 238 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH-- 238 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 4432 121 2367777888999999999999999987543213 34466677788889999999999999998864
Q ss_pred CChhhHHHH
Q 016027 247 PSPTTYNYF 255 (396)
Q Consensus 247 ~~~~~~~~l 255 (396)
|+......|
T Consensus 239 P~~~~~~aL 247 (282)
T 4f3v_A 239 PEPKVAAAL 247 (282)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 444444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=75.75 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 108 (396)
..++..++..+.+.|++++|+..|+++++.. |.++.+|..++.+|...|++++|++.++++.+.+|...++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 4477889999999999999999999999875 7788889999999999999999999999988776554333
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
..+|..+..++...|++++|++.|++.+.. .|+....
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 235667777788888888888888887764 3454443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-10 Score=91.73 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
+...+..+...+...|++++|+..|+++....+. +...+..+..+|.+.|++++|...++...+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3445555566666666666666666666665432 555666666666666666666666666665532 24556666666
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 016027 258 YFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE 337 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (396)
++...|++++|...|++..+.+.. +...+...+....+ ...+.. +..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666665553210 00011111111111 111111 1112222223344443333322 2567777
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHHc-CCchHHHHHHHHHhcc
Q 016027 338 ASAEFEDMIRRGLVPHYLT-FKRLNDEFKKR-GMTALAQKLCNVMSSV 383 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 383 (396)
|++.+++..+. .|+... ...+...+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777766653 344332 33333333333 5677777777776554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-09 Score=76.29 Aligned_cols=118 Identities=9% Similarity=-0.056 Sum_probs=86.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+..+|..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|.+.++++...++. +...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHH
Confidence 45678888888888888888888888887764 667777888888888888888888888888776443 5677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (396)
+..+..++...|++++|...|++..+.... +...+..+..++...|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777788888888888888888877765322 3445555555554433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-09 Score=73.25 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|++.|+++.... |.+..++..++..+...|++++|..+++++....+. +..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHH
Confidence 4577778888888888888888888887763 566777778888888888888888888887765433 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC 155 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (396)
..+...+...|++++|...|+++.+..+. +...+..+...+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 77777788888888888888877765322 4445555544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-09 Score=81.98 Aligned_cols=123 Identities=10% Similarity=0.089 Sum_probs=99.0
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH-HHh
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG-WFR 121 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 121 (396)
+...|++++|+..++++.... |.++.++..++..|...|++++|...|+++...+|. +...+..+..+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-----PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-----CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHh
Confidence 456788999999999988874 778888999999999999999999999999887654 67788888888 778
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 122 SKNV--KDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 122 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
.|++ ++|...|+++.+..+. +...+..+..++...|++++|...++.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888 9999999998876433 67788888888999999999999999888773
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=79.33 Aligned_cols=110 Identities=18% Similarity=0.042 Sum_probs=92.3
Q ss_pred HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHH
Q 016027 17 LLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFH 96 (396)
Q Consensus 17 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 96 (396)
.|.+++.. .|+ +...+..++..+.+.|++++|+..|+++.... |.++.++..++.++...|++++|+..|+
T Consensus 6 ~l~~al~~--~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 6 TLAMLRGL--SED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----HYDARYFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp ---CCTTC--CHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHcC--CHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555553 344 35688889999999999999999999999875 7888999999999999999999999999
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 97 KRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
++...+|. +...+..+..++...|++++|...|+...+.
T Consensus 77 ~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 77 YGALMDIN---EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988665 6778888999999999999999999998775
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-09 Score=74.61 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.+..++..++..+...|++++|.+.++++....|. +...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 83 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---YSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---CHHHH
Confidence 4577788888888888888888888887764 666777888888888888888888888888776443 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (396)
..+...+...|++++|...|++..+.... +...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 77788888888888888888887766422 556666666666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=84.28 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC---
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV----RVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN--- 143 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--- 143 (396)
...+...+..+...|++++|.+++++.....+. .|+. ..+..+...+...+++++|+..|++....... ++
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 445666778888888999999998888775433 3432 23446777777788889999998888874222 22
Q ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-
Q 016027 144 -VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-----GIEP-NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE----PG- 211 (396)
Q Consensus 144 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~- 211 (396)
..+++.+..+|...|++++|+..++++.+. +..+ ...++..+..+|.+.|++++|+..+++.++.. ..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 236888888888899999999888888741 1112 23467788888899999999998888877532 11
Q ss_pred CchhhHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 016027 212 PTMVTYTSLVKGYCKAGD-LEGASKILKMMIS 242 (396)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 242 (396)
.-..+|..+..+|.+.|+ +++|...+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 125678888888888884 5888888887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.7e-08 Score=79.14 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=85.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-Cch----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hhhHHHH
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCEPG-PTM----VTYTSLVKGYCKAGDLEGASKILKMMISRGFL-PS----PTTYNYF 255 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 255 (396)
+..+...|++++|..++++....... ++. ..+..+...+...+++++|...++++...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566677777777777776654221 111 12223555555566677777777666653221 11 1245666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-ChhhHHH
Q 016027 256 FRYFSKFGKVEDAMNLYRKMIES-----GYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKCRG----CDI-DLDTSTM 324 (396)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ 324 (396)
...|...|++++|...|+++.+. +..+ ...++..+..+|.+.|++++|...+++..+.. ..+ -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666665531 1111 12245555666666666666666666554321 111 1345555
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHH
Q 016027 325 LIHLLCRMYK-FDEASAEFEDMI 346 (396)
Q Consensus 325 l~~~~~~~~~-~~~a~~~~~~~~ 346 (396)
+..++.+.|+ +++|.+.+++.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555553 356665555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=94.70 Aligned_cols=146 Identities=10% Similarity=-0.072 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC------------ChHHHH
Q 016027 46 AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP------------TVRVYN 113 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~ 113 (396)
.+++++|+..|+...... |.+...+..++..+.+.|++++|+..|+++....|.... ....|.
T Consensus 126 L~~~~~A~~~~~~a~~~~-----p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-----LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 445556666665555442 455667788888888888888888888888776543110 034555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
.+..++.+.|++++|+..|++.++.... +...+..+..++...|++++|+..|++.++.. +.+...+..+..++...|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 5555666666666666666655554322 45555555555555555555555555555542 334445555555555555
Q ss_pred CHHHH
Q 016027 194 RFEEV 198 (396)
Q Consensus 194 ~~~~a 198 (396)
++++|
T Consensus 279 ~~~~a 283 (336)
T 1p5q_A 279 RQLAR 283 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-09 Score=87.93 Aligned_cols=152 Identities=15% Similarity=0.010 Sum_probs=124.8
Q ss_pred ccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---------------h
Q 016027 8 AKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---------------A 72 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~ 72 (396)
.+++++|...+...+.. .|+ ...++..++..+.+.|++++|+..|+++.... |.+ .
T Consensus 126 L~~~~~A~~~~~~a~~~--~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--KLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-----EYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEECCCCGGGCCHHH--HHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTCCCCCSHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--HHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-----hccccCChHHHHHHHHHHH
Confidence 34555665555444432 233 25689999999999999999999999999985 444 5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
.++..++.+|.+.|++++|+..|+++...+|. +...|..+..++...|++++|+..|++..+..+. +...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 88999999999999999999999999998665 7889999999999999999999999999987533 6788899999
Q ss_pred HHHccCCHHHH-HHHHHHHHH
Q 016027 153 GYCRLRRVDRA-IRLVKEMRK 172 (396)
Q Consensus 153 ~~~~~~~~~~a-~~~~~~~~~ 172 (396)
++...|+.+++ ...|+.|..
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 456666643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-08 Score=82.17 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=124.0
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC---CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA---PTVRVYNILLNGWFRSKNVKDAERFWLEMRKENV---TPN 143 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 143 (396)
.....+...+..+...|++++|.+.+.+.....+... .....+..+...+...|++++|+..+++...... .+.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3455677788888899999999999888776554311 0123355677777888899999999988875421 111
Q ss_pred --hhHHHHHHHHHHccCCHHHHHHHHHHHHH---cC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 016027 144 --VVTYGTLVEGYCRLRRVDRAIRLVKEMRK---EG-IEP--NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG---- 211 (396)
Q Consensus 144 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 211 (396)
..+++.+...|...|++++|+..+++..+ .. ..+ ...++..+..+|...|++++|+..+++..+....
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 44788888899999999999999988873 21 111 1257788888899999999999999887753210
Q ss_pred -CchhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 016027 212 -PTMVTYTSLVKGYCKAGDLEGA-SKILKMMIS 242 (396)
Q Consensus 212 -~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 242 (396)
.-..+|..+..+|...|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1256788888899999999998 776776653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.5e-09 Score=73.88 Aligned_cols=98 Identities=15% Similarity=0.013 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+...|++++|+..|+++.+.. |.++.++..++.++...|++++|+..|+++...+|. +...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHH
Confidence 4578888999999999999999999998875 778889999999999999999999999999887655 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 88999999999999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-09 Score=86.23 Aligned_cols=175 Identities=8% Similarity=-0.063 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC-CC--
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWA-PT-- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-- 108 (396)
...+...+..+...|++++|++.+.+..+..... ........+..++..+...|++++|+..++++....+... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4577778888888888888888888776543221 1123345566677788888888888888888765433221 22
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHH---hCC-CCC--ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMR---KEN-VTP--NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----IEP- 177 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~- 177 (396)
..+|+.+...|...|++++|+..|++.. +.. ..+ ...++..+..+|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4578888888888888888888888876 221 111 12577788888888888888888888776531 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 016027 178 NAIVYNTVIDGLVEAGRFEEV-SGMMERFLV 207 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 207 (396)
-..++..+..++.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156677888888888888888 666776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=79.37 Aligned_cols=111 Identities=12% Similarity=-0.075 Sum_probs=87.3
Q ss_pred HHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 016027 54 WTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWL 133 (396)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (396)
..|+++.... |.+...+..++..+...|++++|...|+++...+|. +...|..+..++...|++++|+..|+
T Consensus 8 ~~~~~al~~~-----p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEIS-----SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCC-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCC-----HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455555553 566777888888888889999998888888877554 77788888888888888888888888
Q ss_pred HHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 134 EMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
+.....+. +...+..+..++...|++++|+..|+..++.
T Consensus 80 ~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88876433 6677788888888888888888888888775
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-09 Score=82.04 Aligned_cols=164 Identities=12% Similarity=-0.012 Sum_probs=110.2
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-CCCchhHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDSGASLFEILLDSLC 83 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 83 (396)
+...|++++|.+.++.... .|. ....++..++..+...|++++|+..++++.......+ .+....++..++..+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA---HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp -----CHHHHHHHHHHHHT---STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC---ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3568999999995444433 232 1267899999999999999999999999988432111 1345667888999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCC----CChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--hhHHHHHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWA----PTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN---VTPN--VVTYGTLVEGY 154 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~ 154 (396)
..|++++|.+.++++........ .....+..+...+...|++++|...+++..... ..+. ..++..+...+
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999998776522111 123457777888888888888888888775421 0111 22345666677
Q ss_pred HccCCHHHHHHHHHHHHH
Q 016027 155 CRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~ 172 (396)
...|++++|...+++..+
T Consensus 158 ~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 777777777777766554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=75.58 Aligned_cols=130 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
...+..++..+...|++++|...|+++...+|. +..++..+..++...|++++|...+++..+... .+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 345666777777888888888888887776443 566777777777777888888887777776532 2566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYN--TVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
.++...|++++|...+++..+.. +.+...+. ..+..+...|++++|+..+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777777776653 22333332 23333556666777766666543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.8e-07 Score=73.82 Aligned_cols=139 Identities=14% Similarity=0.024 Sum_probs=94.8
Q ss_pred hhccCch-hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcccccCCCCchhH
Q 016027 6 AKAKEFD-SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM----------VEAAIWTFEFANNLDMVKNFDSGASL 74 (396)
Q Consensus 6 ~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~ 74 (396)
.+.|.+. +|+.++..++.. .|+ +..+|+.-..++...|. +++++.+++.+...+ |.+..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-----PKny~a 110 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-----PKSYGT 110 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--Cch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-----CCCHHH
Confidence 3456665 678888888874 455 34577766555555444 567778888777764 777778
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 75 FEILLDSLCKQGR--VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN-VKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 75 ~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
|+.-..++...++ +++++.+++++...+|. |..+|+.-...+...|. ++++++.++++++..+. |..+|+...
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~ 186 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 8777777777773 77888888888776554 77777777666667776 47777777777776544 666776655
Q ss_pred HHHHcc
Q 016027 152 EGYCRL 157 (396)
Q Consensus 152 ~~~~~~ 157 (396)
..+...
T Consensus 187 ~ll~~l 192 (331)
T 3dss_A 187 CLLPQL 192 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-08 Score=72.51 Aligned_cols=121 Identities=7% Similarity=-0.016 Sum_probs=79.0
Q ss_pred CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 68 FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
.+.+...+..++..+...|++++|.+.|+++...++. +...+..+..++...|++++|+..+++..+... .+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGY 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHH
Confidence 3556667777777777777788887777777765433 566777777777777777777777777766532 255666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
..+..++...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 666777777777777777777666652 223344444555444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-09 Score=81.15 Aligned_cols=160 Identities=13% Similarity=-0.074 Sum_probs=105.1
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CCChHHHHHHHHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW---APTVRVYNILLNGW 119 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 119 (396)
+...|++++|.+.++.+... .+....++..++..+...|++++|...++++....... .....++..+...+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-----PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-----TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 35678999999965555442 13567788899999999999999999999887632111 12345677788888
Q ss_pred HhcCChhHHHHHHHHHHhC----CCCC--ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHH
Q 016027 120 FRSKNVKDAERFWLEMRKE----NVTP--NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG---IEPN--AIVYNTVIDG 188 (396)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~ 188 (396)
...|++++|...+++.... +..+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+..+
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8889998888888876553 1111 23456677777888888888888887766421 0111 2234566667
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 016027 189 LVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~ 207 (396)
+...|++++|...+++..+
T Consensus 157 ~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHH
Confidence 7777777777777766654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-08 Score=68.94 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+...|++++|+..|+++.... |.++.++..++..+...|++++|...++++....|. +...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHH
Confidence 4578888899999999999999999988864 667888888999999999999999999998876543 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
..+..++...|++++|...|++..+.... +...+..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 88888888999999999999888876432 444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-08 Score=69.82 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
..++..++..+...|++++|.++|+++....+. +...+..+...+...|++++|...|+++.... +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 455666677777777777777777776665332 45566666666777777777777777666543 22455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGL 189 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (396)
..+...|++++|...++++.+.. +.+...+..+..++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666666666553 23334444444333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=72.61 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.+...+..++..+...|++++|...|+++....|. +...+..+..++...|++++|...+++...... .+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 84 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHH
Confidence 344556666777777777777777777777665432 556666677777777777777777777665532 2455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
.+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666553 3344555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=74.55 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...|..++..+...|++++|+..|+++.... |.+..++..++.+|...|++++|+..|+++...+|. +...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 82 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 5688999999999999999999999999985 778899999999999999999999999999988655 68889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..+..++...|++++|...|++.++..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-09 Score=75.95 Aligned_cols=101 Identities=14% Similarity=-0.053 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
|.+...+..++..+...|++++|...|+++...+|. +...|..+..++...|++++|+..|++.....+. +...+.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 90 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHH
Confidence 556677788888888899999999999988887554 7778888888888899999999999888876533 667778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|++.|+...+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=72.58 Aligned_cols=99 Identities=13% Similarity=-0.056 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
+...+..++..+...|++++|+..|+++.... |.++.++..++.++...|++++|...++++...+|. +...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHH
Confidence 46788888889999999999999999888874 677888888888888999999999999888887554 6778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+..+..++...|++++|...|++..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888888888887754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-06 Score=71.45 Aligned_cols=171 Identities=8% Similarity=-0.024 Sum_probs=109.0
Q ss_pred HHHcCCHH-HHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC----------hHHHHHHHHHHhhccCCCCCChHH
Q 016027 43 YARAGMVE-AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR----------VKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 43 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+.|.++ +|+++++.+...+ |.+..+|+.-..++...+. +++++.+++.+...+|. +..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-----P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---ny~a 110 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGT 110 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-----chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC---CHHH
Confidence 34556665 6888888888875 7777777766666555443 56777777777776544 6677
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016027 112 YNILLNGWFRSK--NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR-VDRAIRLVKEMRKEGIEPNAIVYNTVIDG 188 (396)
Q Consensus 112 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (396)
|+.-.-.+...+ ++++++.+++++.+..+. |..+|+.-...+...|. ++++++.++.+++.. +-|...|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 776666666666 367777777777776544 66677666666666666 477777777777764 4455666655555
Q ss_pred HHHc--------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 016027 189 LVEA--------------GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGY 224 (396)
Q Consensus 189 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (396)
+... +.++++++.+.+.....|. |..+|+-+-..+
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4444 3355666666666665443 555555443333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.7e-09 Score=72.78 Aligned_cols=96 Identities=11% Similarity=-0.024 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..++..+.+.|++++|+..|+++.+.. |.+..++..++.++...|++++|+..|+++...+|. +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence 57788889999999999999999999875 788899999999999999999999999999988665 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+..++...|++++|+..|++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998865
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-08 Score=78.00 Aligned_cols=122 Identities=12% Similarity=-0.019 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch----------------hHHHHHHHHHHHcCChHHHHHHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA----------------SLFEILLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~ 97 (396)
..+..++..+...|++++|+..|+++.... |.++ .++..++.++...|++++|+..+++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-----IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456666667777777777777777766643 2222 4556666666666666666666666
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
+...+|. +...+..+..++...|++++|...|++..+.... +...+..+..++...++..++.
T Consensus 114 al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 114 VLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 6655332 4555666666666666666666666665554322 4445555555554444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=72.08 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---- 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 108 (396)
...+..++..+...|++++|+..|+++.... |.++.++..++..+...|++++|...++++....+...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 4578888999999999999999999998874 6778888899999999999999999999988775443333
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
..++..+..++...|++++|...|++..+.. |+......+..+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6677888888888888888888888887753 455555444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=75.06 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=81.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|+++++. .|+ +..+|..++.++...|++++|+..|+++.... |.++.++..++.++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~--~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK--EPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4677899999999999999984 555 47899999999999999999999999999986 88889999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
...|++++|+..|+++.+.+|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999887543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=69.85 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|+..|+++.+.. |.+..++..++.++...|++++|.+.|+++.+..+. ..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHH
Confidence 4577888888888888888888888888764 667778888888888888888888888888876432 1256778
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 016027 113 NILLNGWFRS-KNVKDAERFWLEMRKEN 139 (396)
Q Consensus 113 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 139 (396)
..+..++... |++++|.+.++......
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888888888 88888888888887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-08 Score=69.26 Aligned_cols=99 Identities=9% Similarity=0.001 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTL 150 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 150 (396)
+...+..++..+.+.|++++|+..|+++...+|. +...|..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3456777777888888888888888888776544 6677777888888888888888888877776433 56677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..++...|++++|+..+++..+.
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777777665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-09 Score=82.15 Aligned_cols=149 Identities=9% Similarity=-0.043 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC--C--------
Q 016027 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP--T-------- 108 (396)
Q Consensus 39 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~-------- 108 (396)
.+......|+++++.+.|+...... +.....+..++..+...|++++|...|+++....+.... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-----VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp ------------CCCSGGGCCHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 4445555666666666665433321 334556677777777888888888888877765433110 0
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016027 109 ---VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTV 185 (396)
Q Consensus 109 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (396)
...|..+..++...|++++|+..+++..+... .+...+..+..++...|++++|+..|++..+.. +.+...+..+
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 162 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 13444445555555555555555555444321 234444444444445555555555554444432 2233333344
Q ss_pred HHHHHHcCC
Q 016027 186 IDGLVEAGR 194 (396)
Q Consensus 186 ~~~~~~~~~ 194 (396)
..++...++
T Consensus 163 ~~~~~~~~~ 171 (198)
T 2fbn_A 163 ELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443333333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-08 Score=70.30 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----hh
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PN----VV 145 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 145 (396)
..++..++..+.+.|++++|++.|+++.+.+|. +...|..+..++.+.|++++|+..|++.++.... ++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 445777888888999999999999988887655 6778888888888889999998888887764211 11 13
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVY 182 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 182 (396)
+|..+..++...|++++|++.|++.++. .|++.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 4556666667777777777777776654 3454443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-07 Score=68.71 Aligned_cols=112 Identities=16% Similarity=-0.008 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT 108 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (396)
+...+..++..+...|++++|+..|+++.+.. |.+ ..++..++.++...|++++|+..++++...+|. +
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---D 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---C
Confidence 46788899999999999999999999998863 444 678888899999999999999999998876543 6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
...+..+..++...|++++|...|++..+.... +...+..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 778888888889999999999999888876322 4444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-09 Score=92.10 Aligned_cols=119 Identities=15% Similarity=-0.003 Sum_probs=93.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|+++++. .|+ +..+|..++.++.+.|++++|++.++++.+.. |.+..++..++.+|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KKYIKGYYRRAASN 84 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 4567889999999999998874 454 36788999999999999999999999998875 77788899999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH--HHhcCChhHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG--WFRSKNVKDAERFWL 133 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 133 (396)
...|++++|.+.|+++.+.+|. +...+..+..+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT---CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998887654 44455555555 778889999998888
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=67.69 Aligned_cols=100 Identities=12% Similarity=-0.011 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch---hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA---SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
++..++..+...|++++|+..|+++.... |.++ .++..++.++...|++++|...|+++....|........
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG 78 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH
Confidence 56778888889999999999999888864 4444 678888899999999999999999988875542222567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
+..+..++...|++++|...|+++....
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7888888888999999999998888763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-09 Score=72.06 Aligned_cols=91 Identities=13% Similarity=-0.039 Sum_probs=74.4
Q ss_pred hccCchhHHHHHHHHhCCCC-CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc
Q 016027 7 KAKEFDSAWCLLLDKIGGHE-VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ 85 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (396)
..|++++|+..|.++++.+. .|+ +..++..++.++...|++++|+..|+++.+.. |.++.++..++.++...
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHc
Confidence 46899999999999998531 243 36789999999999999999999999999975 77889999999999999
Q ss_pred CChHHHHHHHHHHhhccCC
Q 016027 86 GRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 86 ~~~~~A~~~~~~~~~~~~~ 104 (396)
|++++|...|+++....|.
T Consensus 75 g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp TCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999887544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-07 Score=64.68 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
..+..++..+...|++++|...|+++....|. +...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 44556666666667777777777666655332 455666666666666666666666666655432 24555555666
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 016027 153 GYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~ 173 (396)
++...|++++|.+.++...+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 666666666666666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-07 Score=81.02 Aligned_cols=208 Identities=9% Similarity=-0.056 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC------------CchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD------------SGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
+-..-++.+...|++++|++.|..+.+.....+.. ....++..++..|...|++++|.+.+..+....
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 55566788899999999999999998864321100 012347889999999999999999999987654
Q ss_pred CCCCCC---hHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 016027 103 QSWAPT---VRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVTP-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE- 173 (396)
Q Consensus 103 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 173 (396)
+..... ..+.+.+...+...|+++++..+++..... +..+ -..++..+...+...|++++|..+++.+...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 332211 122334444555678999999999887542 2222 2457788999999999999999999988754
Q ss_pred -CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 174 -GI---EPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE---PGP---TMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 174 -~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+. +....++..++..|...|++++|..++++..... ..| -...+..+...+...+++++|...|.+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1224577888899999999999999998876531 112 134566777788889999999988877754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=81.75 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=146.3
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCC-C------------hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCC
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFV-S------------KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFD 69 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 69 (396)
+.+.+.|++++|++.|.++++........ + ..++..++..|...|++++|.+.+..+.......+-.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678999999999999998754322100 0 1258899999999999999999999988753211000
Q ss_pred -CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC--C-CChHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC--
Q 016027 70 -SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW--A-PTVRVYNILLNGWFRSKNVKDAERFWLEMRKE--NVT-- 141 (396)
Q Consensus 70 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-- 141 (396)
....+...+...+...|+++.|.++++......+.. . .-..++..++..+...|++++|..+++++... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 111234455556666799999999998876542211 1 12457788999999999999999999987653 111
Q ss_pred C-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 142 P-NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIEPN--AIVYNTVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 142 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
+ ...++..+++.|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888999999999999999999887653 11111 23455666777888999999988877754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=68.13 Aligned_cols=101 Identities=10% Similarity=-0.024 Sum_probs=79.4
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.++..+..++..+...|++++|...|+.+...+|. +...|..+..++...|++++|...+++..+.... +...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 556777888888888888888888888888876544 6777888888888888888888888888776433 667777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|+..+++..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888888877664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-07 Score=69.71 Aligned_cols=101 Identities=5% Similarity=-0.083 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.+...+..++..+...|++++|++.|+++...+|. +...|..+..++.+.|++++|+..|++.++.... +...|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 456677888888888999999999999988887554 6778888888888888899998888888876433 677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|+..|++.++.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888888776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=83.09 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---------------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---------------ASLFEILLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 97 (396)
...+..++..+.+.|++++|+..|+++.... |.+ ..+|..++.+|.+.|++++|+..+++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4467777888888888888888888887764 333 45666777777777777777777777
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
+...+|. +...|..+..++...|++++|+..|++.++.... +...+..+..++.+.++.+++.
T Consensus 343 al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543 5666777777777777777777777776665322 4456666666666666665554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=65.27 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=77.0
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP--NVVT 146 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 146 (396)
|.+..++..++..+...|++++|...|+++....+. +...+..+..++...|++++|...|++..+.. +. +...
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 78 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDV 78 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHH
Confidence 455667777888888888888888888888776443 56777778888888888888888888877753 22 4667
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHcC
Q 016027 147 YGTLVEGYCRL-RRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 147 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 174 (396)
+..+..++... |++++|.+.++...+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777788888 88888888888777663
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-08 Score=68.77 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----hh
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT--PN----VV 145 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 145 (396)
+..+..++..+...|++++|...|+++....|. +...+..+...+...|++++|...+++....... ++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 455777778888888888888888888776433 5667777777888888888888888777664211 11 55
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016027 146 TYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVI 186 (396)
Q Consensus 146 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (396)
++..+..++...|++++|.+.++...+. .|+......+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6666677777777777777777777665 23444444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=69.50 Aligned_cols=103 Identities=9% Similarity=-0.040 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---C----------CCCchhHHHHHHHHHHHcCChHHHHHHHHHHh
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK---N----------FDSGASLFEILLDSLCKQGRVKAASEYFHKRK 99 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 99 (396)
...+...+..+.+.|++++|+..|.++....... . .|.+..++..++.+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4578889999999999999999999998861100 0 14455778888888888888888888888888
Q ss_pred hccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 100 ELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+|. +...|..+..++...|++++|...|++....
T Consensus 91 ~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 87654 6778888888888888888888888888775
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-09 Score=91.92 Aligned_cols=125 Identities=17% Similarity=0.046 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++..++..+.+.|++++|++.|+++.+.. |.+..++..++.+|.+.|++++|++.++++.+.+|. +...|..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence 45556677888999999999999999985 778999999999999999999999999999987654 7889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH--HHccCCHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG--YCRLRRVDRAIRLVK 168 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 168 (396)
+..++...|++++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999886433 44566666555 888899999999988
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=89.30 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChh
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVK 126 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 126 (396)
+++++|++.|+...... |.....+..++..+.+.|++++|+..|+++....+... +. . -+
T Consensus 248 ~~~~~A~~~~~~~~~~~-----~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~-------------~-~~ 307 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-----LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-GL-------------S-EK 307 (457)
T ss_dssp EEEECCCCGGGSCHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-SC-------------C-HH
T ss_pred hhcccCcchhhcCHHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-cC-------------C-hH
Confidence 34455555555444432 44566777888888888888888888888877654421 00 0 00
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 127 DAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
... +... ....+|..+..++.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|++++
T Consensus 308 ~~~----~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 308 ESK----ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHH----HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH----HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 000 0000 012344444455555555555555555554442 2334444555555555555555555555555
Q ss_pred hcCCCCchhhHHHHHHHHHhcCChHHHH
Q 016027 207 VCEPGPTMVTYTSLVKGYCKAGDLEGAS 234 (396)
Q Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 234 (396)
+..+. +...+..+..++.+.++.+++.
T Consensus 379 ~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 379 EVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 44331 3344444555555555444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-07 Score=67.66 Aligned_cols=102 Identities=12% Similarity=-0.060 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc----
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL---- 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 101 (396)
...+...+..+...|++++|+..|+++++..+.. ..|.+..+|..++.++.+.|++++|+..++++...
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3467788889999999999999999999986320 00001237888888888888888888888888776
Q ss_pred ---cCCCCCChHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 102 ---DQSWAPTVRVY----NILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 102 ---~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
+|. +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 55666 7777777777777777777777765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=79.96 Aligned_cols=127 Identities=11% Similarity=-0.002 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVK-----------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
..+..++..+.+.|++++|+..|+++.+..... ..+.+..+|..++.+|.+.|++++|++.++++.+.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 358888999999999999999999998731000 014445666667777777777777777777776654
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 103 QSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
|. +...|..+..++...|++++|+..|++..+.... +...+..+..++...++.+++.
T Consensus 304 p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 33 5566666666677777777777777766655322 4455555555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.3e-07 Score=65.69 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=67.7
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYG 148 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (396)
+.+...+..++..+...|++++|.+.|+++....+........|..+..++...|++++|+..+++..+... .+...+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 445666777777777777777777777777765322000055666677777777777777777777666532 2455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666677777777777777766665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.2e-07 Score=63.01 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN---VVTYGTLV 151 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 151 (396)
+..++..+...|++++|.+.|+.+....|........+..+..++...|++++|...|+++....+. + ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 5567777888888888888888888765542222257777788888888888888888888775422 3 55667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 016027 152 EGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.++...|++++|...++.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888888887776
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-08 Score=72.12 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=82.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC------CC--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCC
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE------VP--------DFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNF 68 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~------~p--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 68 (396)
..+.+.|++++|+..|.+++.... .| ++....+|..++.++...|++++|+..+++++..+
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~----- 93 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE----- 93 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----
Confidence 467889999999999999987400 11 11134689999999999999999999999999986
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
|.++.+|..++.+|...|++++|...|+++...+|+
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 888999999999999999999999999999988554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-08 Score=68.23 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=70.9
Q ss_pred HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCC
Q 016027 45 RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKN 124 (396)
Q Consensus 45 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (396)
..|++++|+..|+++.+.+. +-|.+..++..++.+|...|++++|++.|+++.+.+|. +...+..+..++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCC
Confidence 46888999999999988620 01667788899999999999999999999999887665 67788889999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 016027 125 VKDAERFWLEMRKEN 139 (396)
Q Consensus 125 ~~~a~~~~~~~~~~~ 139 (396)
+++|+..|++.....
T Consensus 77 ~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 77 YEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.3e-08 Score=70.11 Aligned_cols=95 Identities=17% Similarity=0.050 Sum_probs=81.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCC-----CCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------ccc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDF-----VSK-----DTFVILIRRYARAGMVEAAIWTFEFANNL-------DMV 65 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 65 (396)
..+.+.|++++|+..|+++++.. |+. .+. .+|..++.++...|++++|+..+++++.. +
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-- 94 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-- 94 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT--
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC--
Confidence 45678999999999999999853 331 012 38999999999999999999999999997 6
Q ss_pred cCCCCchhHH----HHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 66 KNFDSGASLF----EILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 66 ~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
|.+..+| +..+.++...|++++|+..|+++.+.+|+
T Consensus 95 ---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 95 ---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp ---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7888899 99999999999999999999999887554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.2e-08 Score=81.63 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=57.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCCh-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSK-----------------DTFVILIRRYARAGMVEAAIWTFEFANNLDMV 65 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 65 (396)
..+.+.|++++|+..|.+++.. .|+. . .+|..++.++.+.|++++|+..++++....
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~--~p~~--~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 260 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY--MGDD--FMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-- 260 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH--SCHH--HHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHhcCCHHHHHHHHHHHHHH--hccc--hhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 4577899999999999998874 3431 1 145556666666666666666666665553
Q ss_pred cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH-HHhcCChhHHHHHHHHHHh
Q 016027 66 KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG-WFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 137 (396)
|.+..++..++.+|...|++++|...|+++...+|. +...+..+... ....+..+++...|..|..
T Consensus 261 ---p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 261 ---EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555666666666666666666666665554333 33333333333 1223444455555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-07 Score=67.47 Aligned_cols=139 Identities=16% Similarity=0.078 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---C
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---T 108 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 108 (396)
..++..++..+...|++++|+..++++.......+ ......++..++..+...|++++|.+.++++....+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888888888999999988888877532110 0111246777888888888888888888877654221110 1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016027 109 VRVYNILLNGWFRSKNVKDAERFWLEMRKE----NVT-PNVVTYGTLVEGYCRLRRVDRAIRLVKEMR 171 (396)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 171 (396)
...+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344566666677777777777777665432 100 012234444455555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-06 Score=75.98 Aligned_cols=179 Identities=9% Similarity=-0.020 Sum_probs=143.8
Q ss_pred HHHcCCH-HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC----------hHHHHHHHHHHhhccCCCCCChHH
Q 016027 43 YARAGMV-EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR----------VKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 43 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+.|.+ ++|++.++++...+ |.+..+|+.-..++...|+ ++++++.++.+.+.+|. +..+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n-----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~a 109 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGT 109 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHH
Confidence 3344544 57899999999986 8888899988888888887 89999999999987665 8888
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016027 112 YNILLNGWFRSK--NVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR-RVDRAIRLVKEMRKEGIEPNAIVYNTVIDG 188 (396)
Q Consensus 112 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (396)
|+.-.-.+.+.+ +++++++.++++.+..+. +..+|+.-...+.+.| .++++++.++++++.. +-+...|+....+
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 988888888888 679999999999988655 8888888888888888 8899999999998875 4577777777766
Q ss_pred HHHc--------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHH
Q 016027 189 LVEA--------------GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG 232 (396)
Q Consensus 189 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (396)
+.+. +.++++++.++++....+. +..+|..+...+.+.+..++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 6653 4578899999888887664 77788888777777766443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=78.95 Aligned_cols=149 Identities=11% Similarity=-0.005 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+..++..+.+.|++++|+..|+++.... |.+.. +...++++++...+ ....|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~--------~~~~~~~~~~~~~l------------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFM--------FQLYGKYQDMALAV------------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHH--------HTCCHHHHHHHHHH------------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchh--------hhhcccHHHHHHHH------------HHHHH
Confidence 3467788888888899999999999888763 32220 11122222222111 01245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHH
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG-LVE 191 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 191 (396)
..+..++.+.|++++|+..|++.++... .+...+..+..++...|++++|+..|++.++.. +.+...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 5555566666666666666666555432 245555566666666666666666666555442 1223333333333 222
Q ss_pred cCCHHHHHHHHHHHHhc
Q 016027 192 AGRFEEVSGMMERFLVC 208 (396)
Q Consensus 192 ~~~~~~a~~~~~~~~~~ 208 (396)
.+..+.+...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 34455555566655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=83.71 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=93.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCC---CCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE---VPDF-VSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFE 76 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~ 76 (396)
.+..+|++++|+.+++++++... .|+. ....+++.|+.+|..+|++++|..+++++...... ++.|....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998888774321 2221 13468889999999999999999999988764221 13344566688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
.|+..|..+|++++|..+++++... ++..+....+.+.+..++...+.+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888886643 223222344455666667777777778777777754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-07 Score=66.43 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN---- 143 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 143 (396)
..++..++..+...|++++|...++++....+.... ...++..+...+...|++++|...+++....... ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456777888888888888888888887665221110 1135666777777778888888777776542100 01
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIE-PNAIVYNTVIDGLVEAGRFEEVSGMMERFL 206 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 206 (396)
...+..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 334555566666666666666666655432 100 012234444455555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=67.78 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=75.5
Q ss_pred hhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcccccCCCCchhHH
Q 016027 6 AKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMV----------EAAIWTFEFANNLDMVKNFDSGASLF 75 (396)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
.+.+++++|+..++.+++. .|+ +..+|..++.++...|++ ++|+..|+++++.+ |.+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-----P~~~~A~ 83 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----cCcHHHH
Confidence 4667899999999999985 565 478999999999999876 49999999999986 8889999
Q ss_pred HHHHHHHHHcC-----------ChHHHHHHHHHHhhccC
Q 016027 76 EILLDSLCKQG-----------RVKAASEYFHKRKELDQ 103 (396)
Q Consensus 76 ~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~ 103 (396)
..++.+|...| ++++|++.|+++.+.+|
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999998875 78888888888887754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=74.47 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCC------------C-CCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQS------------W-APTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
..+..++..+.+.|++++|++.|+++....+. . +.+...|..+..++.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677888888888999998888888762110 0 0123344444444455555555555555444432
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 140 VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.. +...+..+..++...|++++|+..|++..+.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 11 3444444444444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-07 Score=62.26 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHH
Q 016027 12 DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAA 91 (396)
Q Consensus 12 ~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 91 (396)
++|+..|.++++. .|+ +..++..++.++...|++++|+..|+++.... |.+..++..++.++...|++++|
T Consensus 2 ~~a~~~~~~al~~--~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----PTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTT--TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHh--CCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHH
Confidence 4678888888875 444 46789999999999999999999999999875 77788899999999999999999
Q ss_pred HHHHHHHhhcc
Q 016027 92 SEYFHKRKELD 102 (396)
Q Consensus 92 ~~~~~~~~~~~ 102 (396)
...|+++....
T Consensus 73 ~~~~~~al~~~ 83 (115)
T 2kat_A 73 RQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-06 Score=75.57 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=145.7
Q ss_pred hccCc-hhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcccccCCCCchhHH
Q 016027 7 KAKEF-DSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM----------VEAAIWTFEFANNLDMVKNFDSGASLF 75 (396)
Q Consensus 7 ~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 75 (396)
+.|++ ++|++.+.+++.. .|+ ...+|+.-..++...|+ ++++++.++++.+.. |.+..+|
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-----pK~y~aW 110 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-----PKSYGTW 110 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--Cch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-----CCCHHHH
Confidence 34444 5679999999984 566 36789988888888888 999999999999986 8899999
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 76 EILLDSLCKQG--RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSK-NVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 76 ~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
+.-..++.+.+ +++++++.++++.+.++. +..+|+.-...+.+.| .++++++.++++++..+. +..+|+....
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ 186 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 186 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHH
Confidence 99999999999 779999999999998765 8899998888888888 899999999999988655 8888888777
Q ss_pred HHHcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 016027 153 GYCRL--------------RRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEE 197 (396)
Q Consensus 153 ~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (396)
.+.+. +.++++++.++..+... +-+...|.-+-..+.+.+..++
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 76653 56789999999998874 5567777777777777666443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-07 Score=65.70 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC---h
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT---V 109 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~ 109 (396)
..+|..++..+...|++++|+..|+++.... |.++.++..++.++...|++++|++.++++...+|..... .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 5678899999999999999999999999875 7788899999999999999999999999998875441000 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLE 134 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~ 134 (396)
..+..+..++...|+++.|...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 5566666777777776666555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-07 Score=65.30 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCCh----------HHHHHHHHHHhhccCCCCCChHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRV----------KAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..+.+.+++|++.++++.+.. |.++..|..++.++...+++ ++|+..|+++.+.+|. +..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHH
Confidence 356788999999999999986 88999999999999998875 5999999999998766 77889
Q ss_pred HHHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 113 NILLNGWFRSK-----------NVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 113 ~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
..+..+|...| ++++|++.|++.++. .|+...|...+.
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999998774 788888888887774 455555444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-06 Score=55.76 Aligned_cols=82 Identities=27% Similarity=0.291 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
..++..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|.+.|+++...+|. +...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHHH
Confidence 4577888888888888888888888888764 667778888888888888888888888888876544 56666
Q ss_pred HHHHHHHHhc
Q 016027 113 NILLNGWFRS 122 (396)
Q Consensus 113 ~~l~~~~~~~ 122 (396)
..+..++...
T Consensus 81 ~~l~~~~~~~ 90 (91)
T 1na3_A 81 QNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=75.46 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=84.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHH
Q 016027 42 RYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYN 113 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~ 113 (396)
.+..+|++++|+.+++++...... +..|....+++.|+.+|...|++++|..+++++... ++..+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455788888888888887764321 123344566788888888888888888888776543 222222355677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----CCCC-CC-hhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRK-----ENVT-PN-VVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776653 2322 11 22344555666666777777777776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=58.88 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
+..++..++.++...|++++|+..|+++.+.. |.++.+|..++.+|...|++++|.+.|+++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788899999999999999999999998875 777888999999999999999999999888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-06 Score=59.66 Aligned_cols=113 Identities=15% Similarity=0.019 Sum_probs=69.9
Q ss_pred hccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH--
Q 016027 7 KAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK-- 84 (396)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 84 (396)
-.+++++|+..|.+..+.+ .|. +. ++..|...+..++|+++|+++.+. .++.....|...|..
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~-----a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMF-----GC--LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTT-----HH--HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHcCC-CHh-----hh--HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCC
Confidence 3456667777776666543 222 33 666666666666677777766664 244556666666666
Q ss_pred --cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 016027 85 --QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----SKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 85 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 139 (396)
.+++++|.++|+++.+. + +...+..|...|.. .+++++|...|++..+.|
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 56677777777766654 2 55566666666666 566666666666666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=59.35 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 016027 51 AAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAER 130 (396)
Q Consensus 51 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 130 (396)
+|+..|+++.+.. |.++.++..++..+...|++++|+..|+++...+|. +...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677888887764 778888999999999999999999999999887554 67788889999999999999999
Q ss_pred HHHHHHhC
Q 016027 131 FWLEMRKE 138 (396)
Q Consensus 131 ~~~~~~~~ 138 (396)
.|++..+.
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-05 Score=57.56 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh----c
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR----S 122 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 122 (396)
+++++|+++|+++.+.+ .+. .. +...|...+.+++|.++|+++... + +...+..|...|.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g-----~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g---~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-----EMF--GC--LSLVSNSQINKQKLFQYLSKACEL--N---SGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-----CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCC-----CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHcCCCCC
Confidence 35667777777776653 222 22 666666666677777777776654 2 56666666666666 5
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 016027 123 KNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCR----LRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 174 (396)
+++++|.+.|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 75 ~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 67777777777766654 45566666666666 566677777776666665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=52.34 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
.+...+..++..+...|++++|...|+++...+|. +...+..+..++...|++++|...|++..+..+. +...+..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 82 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 34567777888888888888888888888776443 5677778888888888888888888887765322 4555655
Q ss_pred HHHHHHc
Q 016027 150 LVEGYCR 156 (396)
Q Consensus 150 l~~~~~~ 156 (396)
+..++..
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=59.40 Aligned_cols=95 Identities=9% Similarity=-0.043 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------HH
Q 016027 283 DRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-------YL 355 (396)
Q Consensus 283 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-------~~ 355 (396)
+...+..+...+...|++++|...++++.+..+. +...+..+..++...|++++|++.+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3445666667777777777777777777766433 56677777777777777777777777777643 33 44
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 356 TFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 356 ~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
.+..+..++...|+.+.|...++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5556666666667666665555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=8e-06 Score=54.87 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
|.++.++..++..|...|++++|+..|+++.+.+|. +...|..+..++...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677888999999999999999999999999988665 6678999999999999999999999987753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00011 Score=48.20 Aligned_cols=73 Identities=7% Similarity=-0.016 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh
Q 016027 33 KDTFVILIRRYARAGM---VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV 109 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (396)
...+..++.++...++ .++|..+|+++.+.+ |.++.+...++..+.+.|++++|+..|+++...+|. .|+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 5677777777765554 678888888888875 777777888888888888888888888888777655 5554
Q ss_pred HH
Q 016027 110 RV 111 (396)
Q Consensus 110 ~~ 111 (396)
..
T Consensus 80 ~~ 81 (93)
T 3bee_A 80 VT 81 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.99 E-value=8.8e-06 Score=54.48 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchh-HHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGAS-LFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+..+...|++++|+..|+++.+.. |.+.. ++..++.++...|++++|.+.|+++...+|.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34556666677777777777666653 55555 6666666666777777777777766665443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.8e-05 Score=66.52 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=60.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCC---CCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHE---VPDF-VSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFE 76 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~ 76 (396)
.+.++|++++|+.++++.++... .|+. ....++..++.+|..+|++++|+.+++++...... +..|.....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34566777777777777765322 2221 12346777777777777777777777777653211 12333445567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhh
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
.|+..|...|++++|+.+++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777777777777777777776554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00017 Score=48.07 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=29.1
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKD-TFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
.+.+.|++++|+..|+++++ .++.+.. ++..++.++...|++++|++.|+++.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQ----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHH----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555555555555554 1233344 5555555555555555555555555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0013 Score=54.80 Aligned_cols=67 Identities=7% Similarity=-0.072 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 016027 141 TPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE 209 (396)
Q Consensus 141 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 209 (396)
+.+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|...|+++...+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3456666666665666677777777777777664 566666666666777777777777777776643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00026 Score=58.88 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=100.5
Q ss_pred CCchhHHHHHHHHHHH--cC---ChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 016027 69 DSGASLFEILLDSLCK--QG---RVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPN 143 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (396)
|.+..+|...+++... .+ +..+|..+|+++.+.+|+ ....|..+..++. .. ...+.. +
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~----------~~---~~~~~~-~ 253 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEKALVDI----------VR---HSQHPL-D 253 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH----------HH---HHHSCC-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH----------HH---hccCCC-c
Confidence 6677777777665443 22 357788888888888665 4556665555554 00 111101 1
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKG 223 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (396)
...... ...+.+.... ... .+.++.++..+...+...|++++|...++++...+ |+...|..+...
T Consensus 254 ~~~~~~----------l~~a~~a~~a-~~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~ 319 (372)
T 3ly7_A 254 EKQLAA----------LNTEIDNIVT-LPE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKV 319 (372)
T ss_dssp HHHHHH----------HHHHHHHHHT-CGG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hhhHHH----------HHHHHHHHHh-ccc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 111111 1122221111 112 26678888888877777899999999999999975 677788888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYF 255 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 255 (396)
+.-.|++++|.+.+++.... .|...+|...
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 99999999999999999986 4666666544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=66.52 Aligned_cols=93 Identities=10% Similarity=-0.228 Sum_probs=51.9
Q ss_pred ccCchhHHHHHHHHhCCC---CCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHH
Q 016027 8 AKEFDSAWCLLLDKIGGH---EVPDFV-SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLD 80 (396)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~---~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 80 (396)
.|++++|+.++++.++.. ..|+.+ ...+++.++.+|..+|++++|+.+++++...... +..|.....++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666766666655321 122211 2345666677777777777777776666653211 122333445666666
Q ss_pred HHHHcCChHHHHHHHHHHhh
Q 016027 81 SLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (396)
.|..+|++++|+.+++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=8.4e-05 Score=64.27 Aligned_cols=91 Identities=8% Similarity=-0.123 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHHHHHHHH
Q 016027 46 AGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRVYNILLN 117 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~ 117 (396)
.|++++|+.+++++...... +..|....+++.|+.+|...|++++|+.+++++... ++..+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777776653211 122333455677777777777777777777765533 2222223445667777
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 016027 118 GWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~ 136 (396)
.|...|++++|+.+|++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00024 Score=61.50 Aligned_cols=97 Identities=9% Similarity=-0.129 Sum_probs=57.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccc---cCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cCCCCCChHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMV---KNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKEL-----DQSWAPTVRV 111 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 111 (396)
+..+.++|++++|+.+++++...... +..|....+++.++.+|...|++++|+.+++++... ++..+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455667777777777777653211 122333455667777777777777777777765433 1222223445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00041 Score=45.44 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCchhHHHHHHHHHHHcCC---hHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 69 DSGASLFEILLDSLCKQGR---VKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
|.++.++..++.++...++ .++|..+++++...+|. +......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7788888888888876655 68999999999988766 78888888899999999999999999998864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00061 Score=45.85 Aligned_cols=73 Identities=16% Similarity=-0.012 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK--NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
|..-+..++..+.+.|+++.|+..|+.+.+..... ...+...++..++.++.+.|+++.|...++++...+|.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999988753211 12356778889999999999999999999999887554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00044 Score=49.37 Aligned_cols=92 Identities=11% Similarity=-0.039 Sum_probs=70.1
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHhhcccccCCC-CchhHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG---MVEAAIWTFEFANNLDMVKNFD-SGASLFEILLD 80 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 80 (396)
......+..+.+.|.+.++.+. + +.++...++-++++.+ +.++++.+|+.+.+.. .| .....+..+.-
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~-~---~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGS-V---SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAV 79 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTC-C---CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCC-C---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHH
Confidence 3445566777777777776432 3 3788889999999988 6669999999888863 12 35677888889
Q ss_pred HHHHcCChHHHHHHHHHHhhccCC
Q 016027 81 SLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
++.+.|++++|.++++.+.+.+|+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHccCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999887554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.017 Score=46.19 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 016027 193 GRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA-GDLEGASKILKMMISR 243 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 243 (396)
|+.++|.+.|++.++.++.-+..++......++.. |+.+.+.+.+++....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444444433322234444444444442 4444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00056 Score=54.47 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=50.5
Q ss_pred chhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHhhcccccCCCC-chhHHHHHHHHHHH
Q 016027 11 FDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARA-----GMVEAAIWTFEFANNLDMVKNFDS-GASLFEILLDSLCK 84 (396)
Q Consensus 11 ~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 84 (396)
...|..+++++++. .|+..+..+|..++..|... |+.++|.+.|++++... |. +..++...+..++.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCCCchHHHHHHHHHHH
Confidence 34555555555552 34322344556666666553 66666666666666653 32 25555555555555
Q ss_pred c-CChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 85 Q-GRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 85 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
. |+.+++.+.++++...++...|+....+
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 3 5666666666666555443334443333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.031 Score=53.03 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=82.2
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 016027 118 GWFRSKNVKDAER-FWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFE 196 (396)
Q Consensus 118 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (396)
.....+++++|.+ ++.. + ++......++..+.+.|.++.|+++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345677777765 4311 1 1122336666677777777777765421 11 1123345677888
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 197 EVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
.|.++.+.+ .+...|..+...+.+.++++.|...|..+.. |..+...+...++.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887775442 3567788888888888888888877776542 3334444444566555544444443
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 016027 277 ESGYTPDRLTYHILLKILCKEDKLDLAIQVS 307 (396)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 307 (396)
..| -++....+|.+.|++++|.+++
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 332 1122233344455555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0018 Score=46.30 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhHHHH
Q 016027 266 EDAMNLYRKMIESGYTPDRLTYHILLKILCKED---KLDLAIQVSKEMKCRGCDI--DLDTSTMLIHLLCRMYKFDEASA 340 (396)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 340 (396)
..+.+-|.+..+.+. ++..+...+..++.+++ +.++++.+++.+.+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344445554444443 45555555566666655 4446666666666543 12 23444455555666666666666
Q ss_pred HHHHHHHC
Q 016027 341 EFEDMIRR 348 (396)
Q Consensus 341 ~~~~~~~~ 348 (396)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.026 Score=39.78 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHcCCH------HHHHHHHHHHhhcccccCCCCchh--------HHHHHHHHHHHcCChHHHHHHHHH
Q 016027 32 SKDTFVILIRRYARAGMV------EAAIWTFEFANNLDMVKNFDSGAS--------LFEILLDSLCKQGRVKAASEYFHK 97 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~ 97 (396)
+.++|-..+...-+.|++ ++.+++|+++...- ||+.. +|...+ .+...++.++|.++|+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-----Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-----PPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQM 85 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-----CGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-----CccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 477999999999989999 89999999888853 44321 111111 11234789999999999
Q ss_pred HhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 016027 98 RKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (396)
+......+ ...|...+..-.+.|++..|.+++...+..+..| ...+...++
T Consensus 86 a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 86 ARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 87764343 7788888888888999999999999988877664 334444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0043 Score=41.60 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=50.2
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC----CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQS----WAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
++.-+..++..+...|++..|..+|+.+....+. ..+...++..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4455677888888889999999988887765211 1234567778888888888888888888887765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.018 Score=42.21 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=52.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
....|+++.|.++.+.. . + ...|..|+......|+++-|..+|.++.. +..+.-.|.-
T Consensus 15 AL~lg~l~~A~e~a~~l-~-----~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~ 72 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-N-----D---SITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLV 72 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-C-----C---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-C-----C---HHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHH
Confidence 34556666666654432 1 1 44566666666666666666666665544 3344555555
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLE 134 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 134 (396)
.|+.+.-.++-+.+... + -++....++...|+++++.++|.+
T Consensus 73 tg~~e~L~kla~iA~~~--g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 73 TGDVNKLSKMQNIAQTR--E------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HTCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHC--c------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56655544444433332 1 134444445556666666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.019 Score=54.52 Aligned_cols=155 Identities=10% Similarity=0.054 Sum_probs=97.5
Q ss_pred HHHHccCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 152 EGYCRLRRVDRAIR-LVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 152 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
......+++++|.+ ++.. + ++......++..+.+.|.++.|+++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34445677777766 4411 1 1122336777777888888888765532 11 112344567888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 016027 231 EGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEM 310 (396)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 310 (396)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888775432 3667888888888888888888888887632 334455555677777766666555
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 311 KCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
...| -++....+|.+.|++++|.+++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5443 2344455567778888888877655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.038 Score=40.58 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=93.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 016027 222 KGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLD 301 (396)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (396)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456789999999997765 3788999999999999999999999987532 344555677788888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMS 381 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 381 (396)
...++-+.....| -++.....+...|+++++.++|.+. |..|.. +......|-.+.|.++.+.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 7776666655443 2455566677789999999998544 322211 112234677888888888764
Q ss_pred c
Q 016027 382 S 382 (396)
Q Consensus 382 ~ 382 (396)
-
T Consensus 143 ~ 143 (177)
T 3mkq_B 143 V 143 (177)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.017 Score=40.66 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=45.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 016027 296 KEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLN 361 (396)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 361 (396)
..++.++|.++|+.+++.+-.. ...|......-.+.|++..|.+++.+.+..+.+|. ..+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 4478888888888887654444 67777777777888888888888888888765443 3343333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.016 Score=39.82 Aligned_cols=84 Identities=14% Similarity=-0.001 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCchHHH
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDE---ASAEFEDMIRRGLVP--HYLTFKRLNDEFKKRGMTALAQ 374 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 374 (396)
+..+.+-|.+....+. ++..+-..+.++++++.+... ++.+++++.+.+ .| .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444333 455555556666666555444 555555555432 12 2223334444566666666666
Q ss_pred HHHHHHhccch
Q 016027 375 KLCNVMSSVPR 385 (396)
Q Consensus 375 ~~~~~~~~~~~ 385 (396)
+.++.+.+..|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 66666555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.34 E-value=0.74 Score=43.65 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=37.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHHhccCCHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY--NYFFRYFSKFGKVE 266 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 266 (396)
+.-.|+.+....++..+.+.. ..+..-+..+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 334455555555555544321 1111112222223334556666666655555431 1111111 12333455566655
Q ss_pred HHHHHHHHHHH
Q 016027 267 DAMNLYRKMIE 277 (396)
Q Consensus 267 ~a~~~~~~~~~ 277 (396)
...+++..+..
T Consensus 578 aIq~LL~~~~~ 588 (963)
T 4ady_A 578 AVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 55555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.027 Score=40.56 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=42.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC-CCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE-VPDFVSK----DTFVILIRRYARAGMVEAAIWTFEFANNL 62 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 62 (396)
..+...|.|+.|+-+..-++.... .|+..++ .++..++.++...|++.+|...|+++.+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456678899999888776554321 2332122 36778899999999999999999997664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.043 Score=37.64 Aligned_cols=68 Identities=12% Similarity=-0.032 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHcCCHHH---HHHHHHHHhhcccccCCC-CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYARAGMVEA---AIWTFEFANNLDMVKNFD-SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+-..++-++.+..+... ++.+++.+.+.+ .| ........|+-++.+.|++++|.+.++.+.+.+|+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 5566666666666665555 666666665542 01 23445556666666777777777777766665443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.13 E-value=2.5e-05 Score=66.39 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK 292 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 292 (396)
++.+|..+-.+|...+++.-|.-.--.++-. +.-...++..|...|.+++.+.+++...... ......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 4445555555555555555444333333211 1112223444455555555555554443221 224444554444
Q ss_pred HHHh
Q 016027 293 ILCK 296 (396)
Q Consensus 293 ~~~~ 296 (396)
.|++
T Consensus 272 LYsK 275 (624)
T 3lvg_A 272 LYSK 275 (624)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 4444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.071 Score=38.43 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-------hhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-------ASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
..++..-++.+...|.++.|+-+.+.+...... +++ ..++..++.++...+++.+|...|+++.+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~---~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN---NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC---CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456778889999999999999999987765311 222 236778889999999999999999997554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.83 Score=45.18 Aligned_cols=215 Identities=12% Similarity=0.108 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
....++..+...|..+-+.++.... +.++..-..++.++...|++++|.+.|.++... +..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~---------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~---~~~~~~l~-- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL---------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV---LYSHTSQF-- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS---CTTCCCSC--
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc---------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hcccchhh--
Confidence 4445777788888888777765543 344555577888999999999999999886431 11110000
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC--CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKEN--VTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNA----IVYNTVIDG 188 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 188 (396)
..... +..+.... ...-..-|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.
T Consensus 880 --------~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~ 947 (1139)
T 4fhn_B 880 --------AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKT 947 (1139)
T ss_dssp --------SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred --------hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Confidence 00000 01111110 1112234455555555566666665555555443211111 134555566
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC------------ChHHHHHHHHHHHHC--CCCCChhhHHH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAG------------DLEGASKILKMMISR--GFLPSPTTYNY 254 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~--~~~~~~~~~~~ 254 (396)
+...|++++|...+-.+..... -......++...+..| ..++..+++..-.+. .+...+.-|..
T Consensus 948 ~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~i 1025 (1139)
T 4fhn_B 948 ACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNI 1025 (1139)
T ss_dssp HHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHH
Confidence 6666666666666655544222 2233444444444333 334444444332221 11112223444
Q ss_pred HHHHHhccCCHHH-HHHHHHHHHH
Q 016027 255 FFRYFSKFGKVED-AMNLYRKMIE 277 (396)
Q Consensus 255 l~~~~~~~~~~~~-a~~~~~~~~~ 277 (396)
|-..+...|++-. |.-+|+.+.+
T Consensus 1026 LYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1026 LFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hHhhhhccCChHHHHHHHHHHHHH
Confidence 4444455566554 4445555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.34 Score=47.88 Aligned_cols=148 Identities=9% Similarity=0.056 Sum_probs=87.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC---------------
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN--------------- 67 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 67 (396)
..+.+.|+++-|..+ ....+. + +..-+.++.++...|++++|.++|.++...-....
T Consensus 820 ~~l~~~~~~~~~~~l-~~~~~~----~---~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQL-IGWLNS----D---PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHSCTTHHHHH-HHHSCC----C---HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHH-hhhccC----C---cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345667777777654 334432 2 33457889999999999999999998754211000
Q ss_pred ---CCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 016027 68 ---FDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTP 142 (396)
Q Consensus 68 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (396)
...-+.-|..++..+.+.+.++.+.+.-..+.+......++ ...|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 01112345666677777777777776666665542221221 12466667777777777777777766654422
Q ss_pred ChhHHHHHHHHHHccCCH
Q 016027 143 NVVTYGTLVEGYCRLRRV 160 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~ 160 (396)
-...+..++...+..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 234555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.94 Score=39.35 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=146.9
Q ss_pred cCCHHHHHHHHHHHhhccc-ccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHH--HHHHHHHHHhc
Q 016027 46 AGMVEAAIWTFEFANNLDM-VKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRV--YNILLNGWFRS 122 (396)
Q Consensus 46 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 122 (396)
.|+++.|++.+-.+.+... ..+.+....+...++..|...|+++...+.+..+.+.. +..+...+ .+.++......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcC
Confidence 3778888888766665432 22456667788889999999999999888887766542 32222211 12222333333
Q ss_pred CChhH--HHHHHHHHHh--CC-CCC---ChhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 016027 123 KNVKD--AERFWLEMRK--EN-VTP---NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--GIEPN---AIVYNTVIDGL 189 (396)
Q Consensus 123 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 189 (396)
...+. -..+.+.+.. .| +-. .......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332 1222221111 11 111 1233456788889999999999999998653 21111 34566677889
Q ss_pred HHcCCHHHHHHHHHHHHh----cCCCCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHH----HHH
Q 016027 190 VEAGRFEEVSGMMERFLV----CEPGPT--MVTYTSLVKGYCKAGDLEGASKILKMMISR-GFLPSPTTYNYF----FRY 258 (396)
Q Consensus 190 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l----~~~ 258 (396)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+..+ +.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999998888643 222222 345667777888889999988888777542 111122222211 111
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKE--DKLDLAIQVSKEM 310 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 310 (396)
..-.+....-..+..........++...+..++.+|... .+++.....|...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 111111111122222222222234566777788777653 3455555555443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.037 Score=43.53 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 016027 41 RRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF 120 (396)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (396)
..+.+.|++++|++....-.+.. |.|...-..++..+|-.|++++|.+-++...+.+|...|....|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-----P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH
Confidence 45678899999999888887764 8899999999999999999999999999998887776666666766665422
Q ss_pred hcCChhHHHHHHHHHHhCCCC-----CChhHHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 016027 121 RSKNVKDAERFWLEMRKENVT-----PNVVTYGTLVEGYC--RLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 173 (396)
. =.++...+-. ........++.+.. ..|+.++|..+-..+.+.
T Consensus 80 ~----------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 A----------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H----------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 1122222211 12233344444433 347888888777777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.34 Score=33.51 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=71.9
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 35 TFVILIRR--YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 35 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
....|+.+ +.-.|..++..++..+..... +..-++-++--....-+-+-..++++..-+. -|
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss-------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FD---- 70 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS-------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FD---- 70 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SC----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC-------CccccceeeeecchhhchhHHHHHHHHHhhh-----cC----
Confidence 34444433 445677777777777766642 2223443443333444444444444443221 01
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEA 192 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (396)
....|+.......+-.+- .+...+...+......|.-++-.+++..+... .+|++.....+..+|.+.
T Consensus 71 ------is~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Kl 138 (172)
T 1wy6_A 71 ------LDKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRV 138 (172)
T ss_dssp ------GGGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHT
T ss_pred ------cHhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHh
Confidence 122444444444443321 13344444555555555555555555554332 245555555555666666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 016027 193 GRFEEVSGMMERFLVCEP 210 (396)
Q Consensus 193 ~~~~~a~~~~~~~~~~~~ 210 (396)
|+..+|.+++.++-+.|.
T Consensus 139 g~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 139 GDERDATTLLIEACKKGE 156 (172)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhhh
Confidence 666666666666555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.47 Score=43.94 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=84.9
Q ss_pred CCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccCCCCchhHHHHH--HHHHHHcC-ChHHHHHHHHHHhhcc-
Q 016027 28 PDFVSKDTFVILIRRYARAGM-VEAAIWTFEFANNLDMVKNFDSGASLFEIL--LDSLCKQG-RVKAASEYFHKRKELD- 102 (396)
Q Consensus 28 p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~A~~~~~~~~~~~- 102 (396)
|+.++......++..+...|+ .+.|+.+|+++.... |...++... +......+ +--+|.+++.+..+..
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~------p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~ 316 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKD------PIHDIYYKTAMITILDHIETKELDMITILNETLDPLL 316 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 444444455567777777777 588999999998863 333333222 22222222 2234555555543210
Q ss_pred ---CCCCC-Ch----------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 016027 103 ---QSWAP-TV----------RVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVK 168 (396)
Q Consensus 103 ---~~~~~-~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 168 (396)
....+ +. .....-+..+...|+++-|+++-++..... +-+-.+|..|..+|...|+++.|+-.++
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 00011 11 122223455667899999999999988763 3367899999999999999999999888
Q ss_pred HH
Q 016027 169 EM 170 (396)
Q Consensus 169 ~~ 170 (396)
.+
T Consensus 396 Sc 397 (754)
T 4gns_B 396 SM 397 (754)
T ss_dssp HS
T ss_pred cC
Confidence 77
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.00015 Score=61.74 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=126.5
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.++...|+..+|++.| ++.+ +|. .|..++....+.|++++-+..+.-+++. ..++.+=+.|+.+|
T Consensus 62 kAqL~~~~v~eAIdsy---IkA~-Dps-----~y~eVi~~A~~~~~~edLv~yL~MaRk~------~ke~~IDteLi~ay 126 (624)
T 3lvg_A 62 KAQLQKGMVKEAIDSY---IKAD-DPS-----SYMEVVQAANTSGNWEELVKYLQMARKK------ARESYVETELIFAL 126 (624)
T ss_dssp HHTTTSSSCTTTTTSS---CCCS-CCC-----SSSHHHHHTTTSSCCTTHHHHHHTTSTT------CCSTTTTHHHHHHH
T ss_pred HHHHccCchHHHHHHH---HhCC-ChH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHH------hcccccHHHHHHHH
Confidence 4556667777776543 3322 333 6888999999999999999998877765 34445556788889
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------CCC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKEN--------------------VTP 142 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 142 (396)
++.++..+-.+.+. .||..-...+..-|...|.++.|.-+|..+.... -.-
T Consensus 127 Ak~~rL~elEefl~---------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HTSCSSSTTTSTTS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HhhCcHHHHHHHHc---------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99888766443321 1455455666777777777777766665432210 012
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 016027 143 NVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVK 222 (396)
Q Consensus 143 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 222 (396)
++.||..+-.+|...+.+.-|.-.--.++- .+.....++..|...|.+++-+.+++..+.. .......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 566777777777777776655433322221 1112234455566777777777777776643 2346677777777
Q ss_pred HHHhcCChHHHHHHHHH
Q 016027 223 GYCKAGDLEGASKILKM 239 (396)
Q Consensus 223 ~~~~~~~~~~a~~~~~~ 239 (396)
.|++- ++++..+.++.
T Consensus 272 LYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHSS-CTTHHHHHHTT
T ss_pred HHHhc-CHHHHHHHHHH
Confidence 77654 45554444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.54 Score=32.58 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=84.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 016027 225 CKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAI 304 (396)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 304 (396)
.-.|..++..++..+..... +..-+|.++--....-+-+-..++++.+-+. .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34677888888887777642 5556666666555556666666666655332 121 1233333333
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccc
Q 016027 305 QVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 384 (396)
..+-.+- .+.......+..+...|+-++-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.+.-+.+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 1445556666777777887777777777544 236777777788888888888888888877765544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.18 Score=46.64 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 016027 293 ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDM 345 (396)
Q Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 345 (396)
.+...|+++-|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344556666666666666655322 4566666666666666666666665544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.39 Score=33.14 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 282 PDRLTYHILLKILCKEDKL---DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
|+..+--.+..++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333344444443322 23444444444433211233333444445555555555555555544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.9 Score=37.52 Aligned_cols=255 Identities=14% Similarity=0.072 Sum_probs=144.0
Q ss_pred cCChhHHHHHHHHHHhC-----CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH----HHH
Q 016027 122 SKNVKDAERFWLEMRKE-----NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE-GIEPNAIVYNTVIDG----LVE 191 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~ 191 (396)
.++++.|++.+-.+.+. ...........++..|...++++...+.+..+.+. |.. ......++.. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37788888887666532 23335667788899999999999988877766543 322 2223333332 222
Q ss_pred cCCHHH--HHHHHHHHHhc--C-CCC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---hhhHHHHHHH
Q 016027 192 AGRFEE--VSGMMERFLVC--E-PGP---TMVTYTSLVKGYCKAGDLEGASKILKMMISR--GFLPS---PTTYNYFFRY 258 (396)
Q Consensus 192 ~~~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 258 (396)
....+. -..+.+.+... | ... .......|...+...|++.+|.+++..+... +..+. ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 332222 11122111110 0 001 1122356778888899999999999888643 22211 2356667788
Q ss_pred HhccCCHHHHHHHHHHHHH----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhH----HHHHH
Q 016027 259 FSKFGKVEDAMNLYRKMIE----SGYTPD--RLTYHILLKILCKEDKLDLAIQVSKEMKCR-GCDIDLDTS----TMLIH 327 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~~l~~ 327 (396)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ...-++..+ ..++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 8889999999988888643 222222 234566677777888998888888777642 111133222 22233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCchHHHHHHH
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKR--GMTALAQKLCN 378 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~ 378 (396)
+..-.+....--.++........-++...+..++.+|... .+++...+.|+
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 3333444444444554444433345566777777777653 23444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.5 Score=40.26 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhHHH
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRK-----ENVTPNVVTYG 148 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 148 (396)
+...++..+...|++++|...+..+...+|- +...|..++.++.+.|+..+|++.|+.+.. .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3556778888899999999999998888876 778999999999999999999999988654 38888876643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.9 Score=31.80 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=38.4
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 016027 281 TPDRLTYHILLKILCKEDK---LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRR 348 (396)
Q Consensus 281 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 348 (396)
.|+..+-..+..++.++.. ..+++.+++.+.+.++.-.....-.|.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455555555555665543 3356666666665433223344445556666667777777766666664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.28 E-value=0.34 Score=31.37 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 299 KLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 299 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
+.-+..+-++.+.....-|++.+..+.+++|-+.+++..|.++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555555556666666666666666666666666665544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.28 Score=41.77 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIVYNTV 185 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 185 (396)
+...++..+...|++.++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45667788889999999999999988764 44888999999999999999999999998765 4999998775544
Q ss_pred H
Q 016027 186 I 186 (396)
Q Consensus 186 ~ 186 (396)
-
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.66 Score=32.03 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHcCCH---HHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 33 KDTFVILIRRYARAGMV---EAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+-...+-++.+..+. .+++.+++.+.+.+ .......+..|+-++.+.|++++|.+..+.+.+..|+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 66777777777776654 35777777776642 1124556667777777888888888888777766444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.84 Score=31.44 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 338 ASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 338 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+-++.+...++.|++......+++|.+.+++..|+++++-++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=4 Score=35.22 Aligned_cols=99 Identities=8% Similarity=-0.090 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHH---
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLEMRKE--NVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG-IEPNAIVYN--- 183 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~--- 183 (396)
.++..++..+.+.|++++|.+.|.++... +..--...+-..++.+...+++..+...+.++...- -.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888888999999999999988765 333345567778888888899999888888875431 112222211
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhc
Q 016027 184 -TVIDGLVEAGRFEEVSGMMERFLVC 208 (396)
Q Consensus 184 -~l~~~~~~~~~~~~a~~~~~~~~~~ 208 (396)
.-+..+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234567888888877776554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.18 E-value=8.4 Score=36.82 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 016027 156 RLRRVDRAIRLVKEMRKEGIEPNAIVYN--TVIDGLVEAGRFEEVSGMMERFLV 207 (396)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 207 (396)
..|+.+.+..+++.+.... .|....-. ++.-+|+..|+.....+++..+..
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 4455555555555554431 12211111 222334455555544445555544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.15 E-value=1.8 Score=37.37 Aligned_cols=101 Identities=10% Similarity=-0.064 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhH--H
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE---NVTPNVVT--Y 147 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 147 (396)
.+...++..|.+.|++++|.+.|.++.....+...-...+-.+++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 457789999999999999999999998765555556778888999999999999999999887543 32222221 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 148 GTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 148 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
..-+..+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222345668899988888776554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.92 E-value=4.4 Score=33.03 Aligned_cols=182 Identities=13% Similarity=0.083 Sum_probs=100.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 016027 40 IRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGW 119 (396)
Q Consensus 40 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (396)
++.....|++=+|.+.++ .+..-|.+++++++|++++..-.. .+
T Consensus 20 l~~~I~~G~yYEAhQ~~R-------------------tl~~Ry~~~~~~~eAidlL~~ga~-----------------~l 63 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLR-------------------TIANRYVRSKSYEHAIELISQGAL-----------------SF 63 (312)
T ss_dssp HHHHHHHTCHHHHHHHHH-------------------HHHHHHHHTTCHHHHHHHHHHHHH-----------------HH
T ss_pred HHHHhhccChHHHHHHHH-------------------HHHHHHHHhcCHHHHHHHHHHHHH-----------------HH
Confidence 344455666666665544 455566777888888887655322 24
Q ss_pred HhcCChhHHHHH----HHHHHhCCCCCChhHHHHHHHHHHccCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHH
Q 016027 120 FRSKNVKDAERF----WLEMRKENVTPNVVTYGTLVEGYCRLRRVD-RAIRLVKEMR----KEG--IEPNAIVYNTVIDG 188 (396)
Q Consensus 120 ~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~ 188 (396)
.+.|+...|-++ .+-..+.+++++......++..+.....-+ .=.+++++++ +.| ..-++.....+...
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 455665555443 444455677778777777777765533111 1123333333 222 12367778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCH
Q 016027 189 LVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKA---GDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKV 265 (396)
Q Consensus 189 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (396)
|.+.|++.+|...|-.. ...+...+..++.-+... |...++ +...-.+++ -|...++.
T Consensus 144 ~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~ 204 (312)
T 2wpv_A 144 LLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNI 204 (312)
T ss_dssp HHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBH
T ss_pred HhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCH
Confidence 99999998888766521 111345555555444443 332221 111122222 23456777
Q ss_pred HHHHHHHHHHH
Q 016027 266 EDAMNLYRKMI 276 (396)
Q Consensus 266 ~~a~~~~~~~~ 276 (396)
..|..++....
T Consensus 205 ~~A~~~~~~f~ 215 (312)
T 2wpv_A 205 SFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.37 E-value=6 Score=33.53 Aligned_cols=300 Identities=10% Similarity=0.010 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc-CChHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ-GRVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..+...++..|.+.|+.++..+++......-....-.....+...++..+... +..+.-.++.....+.... +..+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~r~ 95 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ---EKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---HHHH
Confidence 35788999999999999999999987766432211112233455666666553 3334444444443332101 1122
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----hhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC
Q 016027 112 Y------NILLNGWFRSKNVKDAERFWLEMRKENVTPN-----VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE--GIEPN 178 (396)
Q Consensus 112 ~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 178 (396)
| ..++..|...|++.+|.+++.++.+.=-..| ...+..-++.|...+++.++...+...... .+.++
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 3 2578889999999999999988876411112 234455667788899999999988877653 23344
Q ss_pred HHHHHHH----HHHHH-HcCCHHHHHHHHHHHHhcCCCCc------hhhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCC
Q 016027 179 AIVYNTV----IDGLV-EAGRFEEVSGMMERFLVCEPGPT------MVTYTSLVKGYCKAGDLEGASKILK-MMISRGFL 246 (396)
Q Consensus 179 ~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~ 246 (396)
+.....+ ...+. ..++|..|...|-+....-.... ...|..+.. .-.++..+...++. .....-..
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a--Ll~~~r~el~~~l~~~~~~~~~~ 253 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK--IMLGQSDDVNQLVSGKLAITYSG 253 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHSHHHHTTCS
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHcCCHHHHHHHhccccccccCC
Confidence 4333222 23355 68899999888776643211111 112322222 22233333333322 11111124
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 016027 247 PSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLI 326 (396)
Q Consensus 247 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 326 (396)
|....+..++.++ ..+++.+...++..... .+..|+.....+-..+.+ - -...+.++.+ +-...++..+.
T Consensus 254 pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--I---r~~~L~~i~~---pYsrIsl~~iA 323 (394)
T 3txn_A 254 RDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--M---LEQNLCRIIE---PYSRVQVAHVA 323 (394)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--H---HHHHHHHHHT---TCSEEEHHHHH
T ss_pred ccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--H---HHHHHHHHhH---hhceeeHHHHH
Confidence 5555566666665 45667666666655432 233344321111000000 0 0111111211 22445556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC
Q 016027 327 HLLCRMYKFDEASAEFEDMIRRG 349 (396)
Q Consensus 327 ~~~~~~~~~~~a~~~~~~~~~~~ 349 (396)
..+.- ..+++...+-+|+..|
T Consensus 324 ~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 324 ESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHCc--CHHHHHHHHHHHHHCC
Confidence 55543 5678888888887654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.53 E-value=2.4 Score=27.53 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 265 VEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
.-+..+-+..+...++.|++....+.+++|.+.+++..|.++++-++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.21 E-value=1 Score=35.57 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=75.6
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+......++. .|. +...-..+++.++-.|++++|.+-++.+.+..+. ..+....|..++.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~--~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--YLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHHHHHH
Confidence 4578899999999999999986 454 4667778999999999999999999999887421 112222233333321
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHH-HHHHHH--HhcCChhHHHHHHHHHHhC
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYN-ILLNGW--FRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~a~~~~~~~~~~ 138 (396)
. ..+ ++|.- ...|++.-....|. .++.+. ...|+.++|.++-..+.+.
T Consensus 79 ~----~R~--~vfaG--~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 Q----ARK--DFAQG--AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H----HHH--HHTTS--CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----HHH--HHHcC--CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 111 12211 11112211222333 344443 3469999999998888654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.20 E-value=3.5 Score=28.87 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 107 PTVRVYNILLNGWFRSKN---VKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
|+..+-....-++++..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444444444443 2344455555544332212333344444555555555555555555554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=11 Score=34.29 Aligned_cols=309 Identities=8% Similarity=-0.009 Sum_probs=162.0
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYAR--AGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.|++..+..+.. .+.. .| ...|..--..-.. ....++...++++-... |.....-...+..+
T Consensus 16 a~~~~~~~~~~~l~~-~l~~--~p----L~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~------p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMP-GLKD--YP----LYPYLEYRQITDDLMNQPAVTVTNFVRANPTL------PPARTLQSRFVNEL 82 (618)
T ss_dssp HHHTTCHHHHHHHSG-GGTT--ST----THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC------HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH-hhcC--CC----cHHHHHHHHHHhCcccCCHHHHHHHHHHCCCC------hhHHHHHHHHHHHH
Confidence 345677777766532 2321 22 1223222222222 22455555555543332 44455556677777
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|....
T Consensus 83 ~~~~~w~~~l~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHTTCHHHHHHHCCS-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCH
T ss_pred HhCCCHHHHHHhccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCH
Confidence 788888777664432 1235666666777788889888888877777666532 55667777777776664433
Q ss_pred --HHHHHHHHHHcC-----------CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh---hHHHHHHHHH
Q 016027 163 --AIRLVKEMRKEG-----------IEPNAIVY-NTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMV---TYTSLVKGYC 225 (396)
Q Consensus 163 --a~~~~~~~~~~~-----------~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 225 (396)
...-++.+...| ++++.... ..++.... +...+...... ..++.. .+...+.-+.
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChhhHHHHHHHHHHHH
Confidence 333333333333 11111111 11111111 11111111111 111111 1112222233
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTY----NYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLD 301 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (396)
+ .+.+.|...+....+... .+.... ..+.......+...++...+....... .+.......+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHH
Confidence 3 377888888888765432 233222 223333444453456666666654432 34444445555556779999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.|...|..+..... ......--+..++...|+.++|..+|..+..
T Consensus 303 ~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998888765321 1344455567777888999999999988875
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.33 E-value=1.9 Score=37.75 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc---hhHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG---ASLFEILLDSLCKQGRVKAASEYFHKRKEL 101 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 101 (396)
...++.+++.|...+.++.|..+..+..-... ..++ ...+..++..+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~---~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHT---DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT---TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc---cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34677888888888888888888887753210 0111 223445677888888888888888887764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.15 E-value=4.9 Score=27.78 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 267 DAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
+..+-+..+...++.|++......+++|.+.+++..|.++++-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.51 E-value=12 Score=31.67 Aligned_cols=234 Identities=10% Similarity=-0.011 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCCCC--CChHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCChhHH---
Q 016027 74 LFEILLDSLCKQGRVKAASEYFHKRKELDQSWA--PTVRVYNILLNGWFRS-KNVKDAERFWLEMRKENVTPNVVTY--- 147 (396)
Q Consensus 74 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 147 (396)
+...|+..|.+.|+.++..+++......-+.+. ........++..+... +..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 466799999999999999999988655422211 1234466777777664 3444445555544432111 22233
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhh-
Q 016027 148 ---GTLVEGYCRLRRVDRAIRLVKEMRKEGIEPN-----AIVYNTVIDGLVEAGRFEEVSGMMERFLVCE--PGPTMVT- 216 (396)
Q Consensus 148 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~- 216 (396)
.-++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++...+....... +.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578899999999999999999887421212 2345556678899999999999998876431 1122222
Q ss_pred ---HHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCChh
Q 016027 217 ---YTSLVKGYC-KAGDLEGASKILKMMISRGFLPS------PTTYNYFFRYFSKFGKVEDAMNLYR-KMIESGYTPDRL 285 (396)
Q Consensus 217 ---~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 285 (396)
...-...+. ..++|..|...|-+..+.-...+ ...|..+.... .++..+.-.++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHH
Confidence 122233455 78999999888877643200111 11232232222 223222222221 111111235555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016027 286 TYHILLKILCKEDKLDLAIQVSKEMK 311 (396)
Q Consensus 286 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 311 (396)
.+..++.++ ..+++.+...++....
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 566666654 4577877777766653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.21 E-value=11 Score=30.94 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=85.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChhHHHHHHH
Q 016027 77 ILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFW----LEMRKENVTPNVVTYGTLVE 152 (396)
Q Consensus 77 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 152 (396)
.+..-|.+.+++++|++++..-.. .+.+.|+...+-++- +-+.+.++++|......++.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~-----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ-----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344456677777777776544221 233445554444433 33344566667666666666
Q ss_pred HHHccCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 016027 153 GYCRLRRVD-RAIRLVKEMRK----EG--IEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYC 225 (396)
Q Consensus 153 ~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (396)
.+.....-+ .=.++++++++ .| ..-++.....+...|.+.+++.+|...|- . +..++...+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 665444211 11223333322 22 23356777778888888888888877763 1 23334456655554444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 016027 226 KAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMI 276 (396)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 276 (396)
..+...+ ++...-.+++ -|...++...|..++....
T Consensus 179 ~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4433211 1222222233 3344567777777665544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.21 E-value=8.9 Score=28.75 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=54.1
Q ss_pred HHHHHHhhcc-cccCCCCchhHHHHHHHHHHH--cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 016027 54 WTFEFANNLD-MVKNFDSGASLFEILLDSLCK--QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAER 130 (396)
Q Consensus 54 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 130 (396)
.+++++.+.- ....+..|+......+..--. .+...++.++|..|...+-|. .-...|...+..+-..|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGT-KLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSST-TBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566555521 112344555543333333222 444667888888887764442 235667778888888888888888
Q ss_pred HHHHHHhCCCCCC
Q 016027 131 FWLEMRKENVTPN 143 (396)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (396)
+|+.-++.+-.|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 8888887766653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.76 E-value=15 Score=30.18 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=30.2
Q ss_pred cCchhHHHHHHHHhCCCCC---CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016027 9 KEFDSAWCLLLDKIGGHEV---PDFVSKDTFVILIRRYARAGMVEAAIWTFEFA 59 (396)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 59 (396)
...++.++-++..++.+.. -. ..+.+.++..-|.+.+++++|++++-.-
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YE--AHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYE--AAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccH--HHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3455555556666654321 11 1356777788888888888888876533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 396 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 11/245 (4%)
Query: 54 WTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113
A L ++ + A + L QG + A +F K LD ++ Y
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL---DAYI 207
Query: 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173
L N ++ A +L + + V +G L Y +D AI + +
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE- 265
Query: 174 GIEPN-AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEG 232
++P+ Y + + L E G E L P L + G++E
Sbjct: 266 -LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEE 323
Query: 233 ASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLK 292
A ++ + + F ++ + GK+++A+ Y++ I +P + +
Sbjct: 324 AVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 380
Query: 293 ILCKE 297
KE
Sbjct: 381 NTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 41/339 (12%), Positives = 94/339 (27%), Gaps = 40/339 (11%)
Query: 39 LIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKR 98
L R +AG EAA + + +L + R+ ++ +
Sbjct: 5 LAHREYQAGDFEAAERHCMQL-----WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59
Query: 99 KELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLR 158
+ + A + + + + R L ++ + + + LV
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 159 RVDRAIRLVKEMRKEGIEP-----------------------------NAIVYNTVIDGL 189
V + ++ A+ ++ +
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 190 VEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSP 249
G E+ + +P + Y +L +A + A +S +
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 250 TTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILL-KILCKEDKLDLAIQVSK 308
N Y+ + G ++ A++ YR+ IE P + L L ++ + A
Sbjct: 239 VHGNLACVYYEQ-GLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 309 EMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347
C D+ L ++ +EA + +
Sbjct: 296 TALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.62 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.6 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.49 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.47 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.46 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.2 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.13 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.11 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.11 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.07 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.02 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.01 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.0 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.99 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.86 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.8 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.61 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.48 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.41 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.1 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.32 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.5 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.4 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.47 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.33 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-26 Score=199.24 Aligned_cols=366 Identities=13% Similarity=0.060 Sum_probs=304.7
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...+.+.|++++|++.|.++++. .|+ +..++..++.++.+.|++++|+..|+++.+.. |.++.++..++.+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 45678899999999999999975 455 47799999999999999999999999999975 7888999999999
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
|...|++++|++.+..+....+. +...+..........+....+............ ................+...
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 152 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHH
T ss_pred hhhhccccccccccccccccccc---ccccccccccccccccccccccccccccccccc-ccccccccccccccccchhh
Confidence 99999999999999999886433 555666666666677777777777666655533 35555666667777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
.+...+....... +.+...+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...+....
T Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 230 (388)
T d1w3ba_ 153 EAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred hhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence 8888888877764 456677888888999999999999999999887553 67788899999999999999999999998
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
..+. .+...+..+...+...|++++|...|+++.+... -+..++..+..++...|++++|...++......+ .+...
T Consensus 231 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 307 (388)
T d1w3ba_ 231 SLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADS 307 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchh
Confidence 8753 3677888889999999999999999999988753 3577888899999999999999999999887653 47888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccchh
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSVPRS 386 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (396)
+..+...+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|++.|++..+..+.
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999998753 345778888999999999999999999997765443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-23 Score=179.62 Aligned_cols=349 Identities=15% Similarity=0.113 Sum_probs=296.2
Q ss_pred hhhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 2 IKVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 2 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
...|.+.|++++|+..|.++++. .|+ +..+|..++.++.+.|++++|+..+..+.... +............
T Consensus 40 a~~~~~~~~~~~A~~~~~~al~~--~p~--~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~ 110 (388)
T d1w3ba_ 40 SSIHFQCRRLDRSAHFSTLAIKQ--NPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-----PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHhhhhccccccccccccccccc-----ccccccccccccc
Confidence 35678899999999999999985 455 47799999999999999999999999999875 6667777777777
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHH
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVD 161 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 161 (396)
....+....+........... .................+....+...+.......+ -+...+..+...+...|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 186 (388)
T d1w3ba_ 111 LVAAGDMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC---TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHH
T ss_pred ccccccccccccccccccccc---cccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHH
Confidence 778888888777777766542 23555666677777888899999999888877643 36778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016027 162 RAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMI 241 (396)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 241 (396)
+|...++...+.. +.+...+..+..++...|++++|...+++.....+ .+...+..+...+.+.|++++|...|++..
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 264 (388)
T d1w3ba_ 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998874 45677888999999999999999999999988755 467788889999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 016027 242 SRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDLDT 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (396)
+..+ .+..++..+...+...|++++|...++...... +.+...+..+...+...|++++|+..++++.+..+. +..+
T Consensus 265 ~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 341 (388)
T d1w3ba_ 265 ELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAA 341 (388)
T ss_dssp HTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 8753 367889999999999999999999999988864 457788889999999999999999999999887544 6788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 016027 322 STMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGM 369 (396)
Q Consensus 322 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 369 (396)
+..+..+|...|++++|.+.|++.++.. +-+...|..+..+|.+.||
T Consensus 342 ~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 342 HSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999854 3357789999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.3e-17 Score=137.21 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.....+..+.+.|++++|+..|+++.+.. |.++.+|..++.++...|++++|...|+++.+.+|. +...|..
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 92 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMA 92 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---ccccccc
Confidence 45678889999999999999999999875 888999999999999999999999999999988665 6788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH----------------HHHHHHHHccCCHHHHHHHHHHHHHcC-CCC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY----------------GTLVEGYCRLRRVDRAIRLVKEMRKEG-IEP 177 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 177 (396)
++.++...|++++|.+.++++.... |+.... ...+..+...+.+.++...+.+..+.. -.+
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~ 170 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 170 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999988753 221111 001112222334444555554444332 112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 016027 178 NAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFR 257 (396)
Q Consensus 178 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 257 (396)
+..++..+...+...|++++|+..+++.....+. +..+|..+..++...|++++|.+.|++..+.... +..++..+..
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 248 (323)
T d1fcha_ 171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGI 248 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHH
Confidence 3344444455555555555555555555444332 3444555555555555555555555555443211 3444445555
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 016027 258 YFSKFGKVEDAMNLYRKMIE 277 (396)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~ 277 (396)
+|...|++++|+..|++.++
T Consensus 249 ~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 249 SCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.2e-17 Score=137.28 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=189.5
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
.+.+.|++++|+..|+++++. .|+ +..+|..++.++...|++++|+..|+++.+.. |.+...+..++..|.
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~--~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQ--DPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-----PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS--CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-----ccccccccccccccc
Confidence 577899999999999999985 555 47799999999999999999999999999975 788899999999999
Q ss_pred HcCChHHHHHHHHHHhhccCCCCC------------ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhHHHHH
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAP------------TVRVYNILLNGWFRSKNVKDAERFWLEMRKENV-TPNVVTYGTL 150 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 150 (396)
..|++++|.+.++.+....+.... +.......+..+...+.+.++...|.+..+..+ .++...+..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 999999999999998876443110 001111222334456678889999988876532 3456778889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCh
Q 016027 151 VEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (396)
...+...|++++|+..+++..... +.+...+..+..++...|++++|++.|+++++..+. +..++..++.+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCH
Confidence 999999999999999999998874 456788999999999999999999999999987553 678899999999999999
Q ss_pred HHHHHHHHHHHHC
Q 016027 231 EGASKILKMMISR 243 (396)
Q Consensus 231 ~~a~~~~~~~~~~ 243 (396)
++|+..|++..+.
T Consensus 257 ~~A~~~~~~al~l 269 (323)
T d1fcha_ 257 REAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.3e-13 Score=108.23 Aligned_cols=215 Identities=12% Similarity=0.073 Sum_probs=174.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC-ChHHHHHHHHHHhhccCCCCCChHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG-RVKAASEYFHKRKELDQSWAPTVRV 111 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (396)
..++..+..++.+.+.+++|++++++++..+ |.+..+|+..+.++...| ++++|+..++++.+.+|. +..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-----P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~---~~~a 114 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-----AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQV 114 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh---hhhH
Confidence 4577788889999999999999999999986 889999999999998876 589999999999988765 7899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE 191 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (396)
|+.+...+.+.|++++|+..++++.+..+. +..+|..+...+...|++++|++.++.+++.+ +.+...|+.+..++.+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHH
Confidence 999999999999999999999999987544 78899999999999999999999999999985 4567778877777776
Q ss_pred cCC------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 016027 192 AGR------FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLP-SPTTYNYFFRYF 259 (396)
Q Consensus 192 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 259 (396)
.+. +++|+..+.++++..+. +...|..+...+.. ...+++.+.++...+....+ +...+..++..|
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 665 67889999888887653 67777777666544 44677778887776643322 333444455444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.8e-14 Score=114.24 Aligned_cols=226 Identities=16% Similarity=0.074 Sum_probs=151.5
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+...++.+.|+..+.+.+......+.....+|..++.+|.+.|++++|++.|+++.... |.++.+|..++.++..
T Consensus 9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p~~~~a~~~lg~~~~~ 83 (259)
T d1xnfa_ 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPEVFNYLGIYLTQ 83 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCHHHHhhhchHHHH
Confidence 44456777888888888875432221124688899999999999999999999999986 8889999999999999
Q ss_pred cCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 016027 85 QGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAI 164 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 164 (396)
.|++++|++.|+++...+|. +..++..+..++...|++++|...|+...+..+. +......+...+.+.+..+.+.
T Consensus 84 ~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 84 AGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHhh---hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999998665 6778899999999999999999999999876432 4444444445555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016027 165 RLVKEMRKEGIEPNAIVYNTVIDGLVEAGR----FEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMM 240 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 240 (396)
.+........ ++...+. ++..+..... .+.+...+.......+ ....+|..+...+...|++++|...|+..
T Consensus 160 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 160 VLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555554432 2222222 2222221111 1222222111111100 12345556677777777777777777777
Q ss_pred HHC
Q 016027 241 ISR 243 (396)
Q Consensus 241 ~~~ 243 (396)
...
T Consensus 236 l~~ 238 (259)
T d1xnfa_ 236 VAN 238 (259)
T ss_dssp HTT
T ss_pred HHc
Confidence 765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.3e-13 Score=111.57 Aligned_cols=207 Identities=12% Similarity=0.031 Sum_probs=168.8
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGM-VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
.+.+.+.+++|+.++.++++. .|+ +..+|+..+.++...|+ +++|+..++++.+.. |.+..+|..++..+
T Consensus 52 ~~~~~e~~~~Al~~~~~ai~l--nP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-----p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 52 VLQRDERSERAFKLTRDAIEL--NAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-----PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHTCCCHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHhCCchHHHHHHHHHHHHH--CCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-----HhhhhHHHHHhHHH
Confidence 566789999999999999984 566 46799999999999875 899999999999986 88999999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC---
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR--- 159 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 159 (396)
.+.|++++|++.++++.+.+|. +...|..+...+.+.|++++|+..|+++++..+. +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~---n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhhhc---chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 9999999999999999998765 8999999999999999999999999999997644 77788887777666554
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHH
Q 016027 160 ---VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGP-TMVTYTSLVKGYC 225 (396)
Q Consensus 160 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 225 (396)
+++|++.+...++.. +.+...+..+...+.. ...+++.+.++...+..+.+ +...+..++..|.
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 678999999988874 4567777776665544 44677888888877754443 3445555555554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=3.4e-12 Score=106.88 Aligned_cols=280 Identities=11% Similarity=0.014 Sum_probs=176.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCC---Ch
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAP---TV 109 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~ 109 (396)
.......+..+...|++++|+++++++....+....+....++..++.++...|++++|.+.|+.+....+.... ..
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 345556678888999999999999998876421100111346777888999999999999999988765332211 13
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC
Q 016027 110 RVYNILLNGWFRSKNVKDAERFWLEMRKE----NVTPN---VVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG----IEPN 178 (396)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 178 (396)
..+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+....... ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 44566677788889999888888776532 11111 2244556677788888888888887776642 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---h
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG----P--TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPS---P 249 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 249 (396)
...+......+...+++..+...+.+....... + ....+..+...+...|+++.|...+..........+ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 334455556677778888877777665542111 1 123345556667777778877777776655432211 2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 250 TTYNYFFRYFSKFGKVEDAMNLYRKMIES----GYTPD-RLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
..+..+..++...|++++|...++.+... +..|+ ...+..+..+|...|++++|.+.+++..+
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445666777777777777777765432 22222 33555666677777777777777776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.5e-11 Score=101.52 Aligned_cols=306 Identities=10% Similarity=-0.006 Sum_probs=218.1
Q ss_pred chhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC--hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----
Q 016027 71 GASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT--VRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN---- 143 (396)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 143 (396)
.+.........+...|++++|+++++++....|...+. ...+..+..++...|++++|...|++..+.... ++
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 34556667788899999999999999998765442221 346777889999999999999999988653111 11
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C
Q 016027 144 VVTYGTLVEGYCRLRRVDRAIRLVKEMRKE----GIEPN---AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG----P 212 (396)
Q Consensus 144 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~ 212 (396)
...+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+......... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 335566778888999999999998877642 11111 234556778889999999999999988765332 2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---
Q 016027 213 TMVTYTSLVKGYCKAGDLEGASKILKMMISRG--FLP----SPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPD--- 283 (396)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 283 (396)
....+......+...+++..+...+....... ... ....+..+...+...|++++|...+..........+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 34455666777888999999988887765431 111 123456667778899999999999988766533222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC--
Q 016027 284 RLTYHILLKILCKEDKLDLAIQVSKEMKCR----GCDI-DLDTSTMLIHLLCRMYKFDEASAEFEDMIRR----GLVP-- 352 (396)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-- 352 (396)
...+..+..++...|++++|...++++... +..| ....+..+..+|...|++++|.+.+++.++. |...
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~ 330 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 330 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHH
Confidence 344566788899999999999999988642 2222 2456778889999999999999999987652 3221
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHH
Q 016027 353 --HYLTFKRLNDEFKKRGMTALAQKL 376 (396)
Q Consensus 353 --~~~~~~~l~~~~~~~g~~~~A~~~ 376 (396)
....+..++..+...|+.+++.+-
T Consensus 331 ~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 331 VIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 223455566677778888777553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=3.4e-13 Score=112.05 Aligned_cols=250 Identities=8% Similarity=-0.079 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH----------cCChHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 016027 47 GMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK----------QGRVKAASEYFHKRKELDQSWAPTVRVYNILL 116 (396)
Q Consensus 47 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (396)
+..++|+++++++...+ |.+..+|+.....+.. .|++++|+..++.+.+.+|. +...|..+.
T Consensus 43 ~~~~~al~~~~~~l~~~-----P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk---~~~~~~~~~ 114 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRC 114 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC---cHHHHHHhh
Confidence 33467777777777764 5555555444333332 22355666666666554333 455555555
Q ss_pred HHHHhcC--ChhHHHHHHHHHHhCCCCCChhHHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016027 117 NGWFRSK--NVKDAERFWLEMRKENVTPNVVTYG-TLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAG 193 (396)
Q Consensus 117 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (396)
.++...+ ++++|...+.++.+.... +...+. .....+...+.+++|+..++.+++.. +-+...|..+..++.+.|
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 115 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 4444443 355666666665554222 333332 33344445556666666665555553 334555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYR 273 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 273 (396)
++++|...+....... |. .......+...+..+++...+....... +++...+..+...+...+++.+|...+.
T Consensus 193 ~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555443333322210 00 0112222333444444555554444432 2233334444444444455555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016027 274 KMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR 313 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 313 (396)
+..+.++ -+...+..++.++...|+.++|...++++.+.
T Consensus 267 ~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 267 ELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444321 12334444445555555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8.4e-13 Score=109.65 Aligned_cols=275 Identities=10% Similarity=-0.025 Sum_probs=197.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH----------hcCChhHHHHHHHHHHhCCCCCChh
Q 016027 76 EILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWF----------RSKNVKDAERFWLEMRKENVTPNVV 145 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (396)
..++......+..++|+++++++...+|. +...|+..-..+. ..|++++|+.+++...+..+. +..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~ 108 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYG 108 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHH
Confidence 33444444445568999999999988665 5556654433332 344578999999999887544 777
Q ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 016027 146 TYGTLVEGYCRLR--RVDRAIRLVKEMRKEGIEPNAIVYN-TVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVK 222 (396)
Q Consensus 146 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 222 (396)
.|..+..++...+ ++++|+..++.+.+.. +++...+. .....+...+.+++|+..++.+...++. +...|..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~ 186 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 7887777777665 4889999999998874 44455544 4556777889999999999999988664 7888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 016027 223 GYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDL 302 (396)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (396)
++.+.|++++|...+....+. .|. ...+...+...+..+++...+....... +++...+..++..+...++.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence 999999998887666554443 111 1122333455566777888888877764 3355566667777888899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 016027 303 AIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPH-YLTFKRLNDEFK 365 (396)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 365 (396)
|...+.+....++. +..++..++.++...|++++|.+.++++++.+ |+ ..-|..+...+.
T Consensus 261 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 261 SCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 99999988876433 56778888999999999999999999998853 54 445565655443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=3.8e-11 Score=98.15 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 016027 196 EEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKM 275 (396)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 275 (396)
++|..+|++..+..++.+...|...+......|+++.|..+|+.+.+........+|...+..+.+.|+.+.|..+|.++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444444444432222333444444444444555555555555444322212223444444444445555555555554
Q ss_pred HHCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC
Q 016027 276 IESGYTPDRLTYHILLKI-LCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRG-LVPH 353 (396)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~ 353 (396)
.+.... +...|...+.. +...|+.+.|..+|+.+....+. ++..|..++..+...|+++.|..+|++.+... ..|+
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 443211 22222222221 12234455555555555443222 34445555555555555555555555544422 1221
Q ss_pred --HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 016027 354 --YLTFKRLNDEFKKRGMTALAQKLCNVM 380 (396)
Q Consensus 354 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 380 (396)
...|...+.--...|+.+.+.++.+++
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223444444444445555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.4e-12 Score=104.19 Aligned_cols=193 Identities=14% Similarity=0.001 Sum_probs=137.8
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..|.+.|++++|+..|.+++.. .|+ +..+|..++.++.+.|++++|+..|+++.+.. |.++.++..++.++
T Consensus 45 ~~y~~~g~~~~A~~~~~~al~l--~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 45 VLYDSLGLRALARNDFSQALAI--RPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhhcc--CCC--CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-----hhhhhhHHHHHHHH
Confidence 4678899999999999999984 566 47799999999999999999999999999985 77888999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCC---
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRR--- 159 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 159 (396)
...|++++|.+.|+++.+.+|. +......+...+.+.+..+.+..+........ ++...++ ++..+.....
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN---DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccc---cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHH
Confidence 9999999999999999987543 45555555555666666666666666555542 2222222 2222222211
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 016027 160 -VDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPG 211 (396)
Q Consensus 160 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 211 (396)
.+.+...+....... +-...++..+...+...|++++|.+.|++.+...|.
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 190 LMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 222222222111110 112346677889999999999999999999986553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=5.9e-11 Score=96.95 Aligned_cols=185 Identities=7% Similarity=-0.004 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcC--------------ChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 49 VEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQG--------------RVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 49 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+.+..+|+++.... |.++.+|...+..+...+ ..++|..+|+++... ..+.+...|..
T Consensus 32 ~~Rv~~vyerAl~~~-----~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~--~~p~~~~l~~~ 104 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH--cCCCCHHHHHH
Confidence 355667788877753 666777766555443322 234555555555432 11223344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG-LVEAG 193 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 193 (396)
.+......|+++.|..+|+++++.........|...+....+.|+.+.|.++|+++.+.+ +.+...+...... +...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcc
Confidence 555555555555555555555543222222344555555555555555555555554442 2222222222221 22234
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016027 194 RFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMIS 242 (396)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 242 (396)
+.+.|..+|+.+....+ .+...|...+......|+++.|..+|++...
T Consensus 184 ~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 184 DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555554444322 2344444444444444555555555544444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.9e-10 Score=83.68 Aligned_cols=123 Identities=12% Similarity=-0.049 Sum_probs=77.1
Q ss_pred hhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHH
Q 016027 5 LAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCK 84 (396)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (396)
+...|++++|++.|.++. +|+ ..+|..++.++...|++++|++.|+++++.+ |.++.+|..++.++.+
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-----p~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-----KHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-----hhhhhhHHHHHHHHHh
Confidence 455677777777665432 233 5567777777777777777777777777765 6667777777777777
Q ss_pred cCChHHHHHHHHHHhhccCCCC------------C-ChHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 016027 85 QGRVKAASEYFHKRKELDQSWA------------P-TVRVYNILLNGWFRSKNVKDAERFWLEMRKEN 139 (396)
Q Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (396)
.|++++|++.|+++....++.. + ...++..+..++.+.|++++|.+.+....+..
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7777777777777654322100 0 02344555666666666666666666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=9.4e-10 Score=75.16 Aligned_cols=107 Identities=18% Similarity=0.089 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHH
Q 016027 36 FVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNIL 115 (396)
Q Consensus 36 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 115 (396)
+...+..+...|++++|+..|+++++.. |.++.+|..++.++...|++++|+..++.+.+.+|. +...|..+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~ 77 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLD-----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchhhhhcccccccccccccccchhhhhHHHhccc---hhhHHHHH
Confidence 5567888899999999999999998875 888889999999999999999999999999887665 78888999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 016027 116 LNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLV 151 (396)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 151 (396)
..++...|++++|+..|++..+..+. +...+..+.
T Consensus 78 g~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 112 (117)
T d1elwa_ 78 AAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 112 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999999999998876432 444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.3e-10 Score=77.51 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=90.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.+.+.|++++|+..|.++++. .|+ +..+|..++.++...|++++|+..++++.+.+ |.++..|..++.++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----PDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCc--chhhhhcccccccccccccccchhhhhHHHhc-----cchhhHHHHHHHHH
Confidence 4578899999999999999985 555 47799999999999999999999999999986 88999999999999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
...|++++|+..|+++.+.+|. +...+..+..
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~ 113 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKHEAN---NPQLKEGLQN 113 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence 9999999999999999987655 5555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=5.6e-09 Score=78.23 Aligned_cols=90 Identities=11% Similarity=-0.065 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLN 117 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (396)
.-+..+...|++++|++.|+++. ++++.++..++.+|...|++++|++.|+++.+.+|. +...|..+..
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i~--------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---~~~a~~~~g~ 78 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGM 78 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---hhhhHHHHHH
Confidence 34778889999999999998541 567788999999999999999999999999998765 7889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 016027 118 GWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~ 138 (396)
++.+.|++++|+..|++.+..
T Consensus 79 ~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 79 LYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHHHHHh
Confidence 999999999999999988754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=8e-10 Score=80.38 Aligned_cols=123 Identities=17% Similarity=0.052 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+...+..+.+.|++++|+..|+++.+.+ |.+...|..++.+|...|++++|.+.|+++.+.+|. +..+|..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~---~~~a~~~ 83 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYR 83 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-----hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc---chHHHHH
Confidence 45566777888888888888888888875 778888888888888888888888888888887654 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH--HHccCCHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG--YCRLRRVDRAIRL 166 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~ 166 (396)
++.++...|++++|...|++.....+. +...+..+..+ ....+.++++...
T Consensus 84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 84 RAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888888888888776422 44444444333 2334455555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3e-09 Score=77.21 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
+...+..|.+.|++++|+..|+++.+.+|. +...|..+..++...|++++|+..|++.++..+. +..+|..++.++
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 445677888999999999999999988765 7888999999999999999999999999887533 678899999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHH
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDG--LVEAGRFEEVSGMM 202 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~ 202 (396)
...|++++|+..+++..... +-+...+..+..+ ....+.++++....
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999998874 3345544444433 33445566666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=1.1e-08 Score=82.44 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCC-CCchhHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNF-DSGASLFEILLDSLCKQGRVKAASEYFHKRKE 100 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 100 (396)
.|...+..|...|++++|++.|.++.......+. +....+|..++.+|.+.|++++|.+.++++..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 3445555555556666666665555543211110 11223455555555555555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=2.2e-09 Score=81.50 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 33 KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 33 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
...+...+..+.+.|++++|+..|++++... |.++.+|..++.+|.+.|++++|+..|+++.+.+|. +..+|
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-----p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~---~~~a~ 75 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAH 75 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC---cHHHH
Confidence 6778889999999999999999999998875 888899999999999999999999999999887655 67889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..++...|++++|+..|++..+.
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.02 E-value=1.1e-06 Score=69.26 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 016027 263 GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK----EDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 314 (396)
.++++|..+|.+..+.| ++..+..|...|.+ ..+.++|.++|++..+.|
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 34555555555544443 23333334444432 224444555555544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.01 E-value=2.5e-09 Score=72.33 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+..++..+.+.|++++|+..|+++.... |.++.+|..++.++.+.|++++|+..|+++.+.+|. +..+|..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~ 89 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE-----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAA 89 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc-----cccchhhhhhhhhhhhhhhHHHhhcccccccccccc---cccchHH
Confidence 45678888999999999999999999875 778899999999999999999999999999988665 7888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 016027 115 LLNGWFRSKNVKDAERFWLEMR 136 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~ 136 (396)
+..++...|++++|++.+++.+
T Consensus 90 la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 90 LAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=6.8e-09 Score=83.64 Aligned_cols=199 Identities=9% Similarity=-0.073 Sum_probs=109.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----C-CCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCChhhHHHH
Q 016027 186 IDGLVEAGRFEEVSGMMERFLVCE----P-GPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGF-----LPSPTTYNYF 255 (396)
Q Consensus 186 ~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 255 (396)
...|...|++++|...|.++.+.. . .....+|..+..+|.+.|++++|...++...+... .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 445666677777777766665421 1 11234566667777777777777777766554210 1112344445
Q ss_pred HHHHh-ccCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHH
Q 016027 256 FRYFS-KFGKVEDAMNLYRKMIES----GYTP-DRLTYHILLKILCKEDKLDLAIQVSKEMKCRGCDIDL------DTST 323 (396)
Q Consensus 256 ~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 323 (396)
...|. ..|++++|...|.+..+. +..+ ...++..++..+...|++++|...++++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55553 357777777777765432 1111 1234566677777777777777777777664322111 1223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHH--cCCchHHHHHHHHHhccc
Q 016027 324 MLIHLLCRMYKFDEASAEFEDMIRRGLV-PH---YLTFKRLNDEFKK--RGMTALAQKLCNVMSSVP 384 (396)
Q Consensus 324 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 384 (396)
..+..+...|++..|...+++..+.... ++ ......++.++.. .+.+++|+..|+++.+..
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 4444556677777777777777653211 11 2234455555543 234667777776665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.99 E-value=7.8e-07 Score=70.23 Aligned_cols=112 Identities=9% Similarity=0.002 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHH
Q 016027 230 LEGASKILKMMISRGFLPSPTTYNYFFRYFSK----FGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK----EDKLD 301 (396)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 301 (396)
...+...+......+ +...+..+...+.. ..+...+..+++...+.+ +......+...+.. ..+.+
T Consensus 126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 344444444444322 33444444444442 345556666666665543 44555555555554 45788
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 016027 302 LAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYKFDEASAEFEDMIRRGL 350 (396)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 350 (396)
+|..+|++..+.| ++..+..|...|.+ ..+.++|.+.|++..+.|.
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8888888888775 56666777777765 3467888888888877763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.91 E-value=3.2e-09 Score=71.73 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=80.0
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
..+.+.|++++|+..|+++++. .|+ +..+|..++.++.+.|++++|+..|+++.+.. |.+..++..++.+|
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~a~~~la~~y 94 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQK--EPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhccc--ccc--cchhhhhhhhhhhhhhhHHHhhcccccccccc-----cccccchHHHHHHH
Confidence 3567899999999999999985 565 47899999999999999999999999999986 88999999999999
Q ss_pred HHcCChHHHHHHHHHHh
Q 016027 83 CKQGRVKAASEYFHKRK 99 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~ 99 (396)
...|++++|++.+++..
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999998863
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=3.1e-08 Score=74.94 Aligned_cols=99 Identities=10% Similarity=-0.017 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 016027 70 SGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGT 149 (396)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (396)
|+...+...+..+.+.|++++|+..|+++...+|. +...|..+..+|.+.|++++|+..|++.++..+. +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~---~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHH
Confidence 44555666777777888888888888777776554 6677777777777778888888877777765322 5667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 016027 150 LVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 150 l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
+..++...|++++|+..|+.+.+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777776655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=4.3e-08 Score=71.70 Aligned_cols=107 Identities=16% Similarity=0.014 Sum_probs=68.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVS-----------KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA 72 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 72 (396)
.+.+.|++++|+..|.+++...+...... ..+|..++.+|.+.|++++|+..+++++..+ |.++
T Consensus 22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-----p~~~ 96 (170)
T d1p5qa1 22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-----SNNE 96 (170)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-----ccch
Confidence 56778999999999988876432111100 1344556666777777777777777777664 6666
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNG 118 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (396)
.++..++.+|...|++++|+..|+.+.+.+|. +..+...+..+
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~---n~~~~~~l~~~ 139 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPN---NKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 77777777777777777777777777666543 44444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=7.9e-08 Score=66.49 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCC----hH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPT----VR 110 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~ 110 (396)
.+..++..+.+.|++++|+..|+++++.+ |.++.++..++.+|.+.|++++|+..++++...+|..... ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 46678899999999999999999999985 7888999999999999999999999999988876543222 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 111 VYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
+|..+...+...+++++|++.|++....
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5667777788888999999998887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.80 E-value=1.7e-05 Score=63.71 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~d-------------~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~k~ 74 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVSN-------------FGRLASTLVHLGEYQAAVDGARKAN--------STRTWKE 74 (336)
T ss_dssp -------------CTTTHHHHHHHTTC-------------HHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCCC-------------HHHHHHHHHhhccHHHHHHHHHHcC--------CHHHHHH
Confidence 355788888899999999999886544 5678888888899998888876542 5678888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGR 194 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (396)
+...+.+......+ .+...+...+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~- 147 (336)
T d1b89a_ 75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK- 147 (336)
T ss_dssp HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-
Confidence 88888887766543 22233334466666778888888899998888888776442 556677788888777754
Q ss_pred HHHHHHHHHHHHhcCCCC--------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHH
Q 016027 195 FEEVSGMMERFLVCEPGP--------TMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVE 266 (396)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 266 (396)
.++..+.++..... ..+ ....|.-++..|.+.|+++.|..++ .+. +++..-....+..+.+..+++
T Consensus 148 ~~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 148 PQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp HHHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred hHHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChH
Confidence 44444444433110 110 1112334444555555555544332 121 223333444445555555555
Q ss_pred HHHHHHHHHH
Q 016027 267 DAMNLYRKMI 276 (396)
Q Consensus 267 ~a~~~~~~~~ 276 (396)
...++.....
T Consensus 222 ~~~~~i~~yL 231 (336)
T d1b89a_ 222 LYYRAIQFYL 231 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.4e-08 Score=68.19 Aligned_cols=93 Identities=11% Similarity=-0.053 Sum_probs=41.7
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHhhcccccCCCCchhHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAG---MVEAAIWTFEFANNLDMVKNFDSGASLFEILL 79 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (396)
+.+...+++++|++.|++++.. .|+ +..++..++.++.+.+ ++++|+.+|+++...++ .+....++..++
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~~--~p~--~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~---~~~~~~~~~~Lg 79 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKAA--GSV--SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS---KEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--SCC--CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC---HHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC---CchHHHHHHHHH
Confidence 3444445555555555555542 222 2445555555554432 22335555555444320 001122444455
Q ss_pred HHHHHcCChHHHHHHHHHHhhcc
Q 016027 80 DSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
.+|.+.|++++|++.|+++.+.+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHHHHHHHHHHHHhC
Confidence 55555555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=6.6e-09 Score=90.33 Aligned_cols=112 Identities=11% Similarity=-0.101 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 016027 179 AIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRY 258 (396)
Q Consensus 179 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (396)
...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|.+..+..+. +...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 3344444455555555555555544443311 1234444555555555566666665555554322 44555555555
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 016027 259 FSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILC 295 (396)
Q Consensus 259 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (396)
+...|+..+|...|.+..... +|.+.++..|...+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 555566655655555555543 234445555554444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4.1e-07 Score=66.30 Aligned_cols=102 Identities=14% Similarity=-0.026 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCC----------chhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDS----------GASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
..+...+..+.+.|++++|+..|++++.......... ...+|..++.+|.+.|++++|+..++.+...+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 3566788899999999999999999987632110000 123455566666666666666666666666544
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
. ++.+|..++.++...|++++|+..|++..+.
T Consensus 94 ~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 N---NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c---chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3 5666666666666666666666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=8.5e-09 Score=89.64 Aligned_cols=229 Identities=10% Similarity=-0.086 Sum_probs=116.0
Q ss_pred hHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHH
Q 016027 13 SAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAAS 92 (396)
Q Consensus 13 ~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 92 (396)
+|.+.|+++++. .|+. ..++..++.++...|++++| |++++..+ |.....++.....+ ...+..+.
T Consensus 4 eA~q~~~qA~~l--~p~~--a~a~~~la~~~~~~~~l~ea---ye~~i~~d-----p~~a~~~~~e~~Lw--~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADM--TDSKLGPAEVWTSRQALQDL---YQKMLVTD-----LEYALDKKVEQDLW--NHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHH--HGGG--TCSSSCSSSSHHHHHHHHHH---HHHHHHHC-----HHHHHHHTHHHHHH--HHHTHHHH
T ss_pred HHHHHHHHHHHc--CCCC--HHHHhhHHHHHHHHchHHHH---HHHHHHcC-----hhhHHHHhHHHHHH--HHHHHHHH
Confidence 577778888763 4552 34677788888888888776 66766553 21112221111111 11245566
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 016027 93 EYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK 172 (396)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 172 (396)
+.++...+......................+.++.++..+....... +++...+..+...+.+.|+.++|...++....
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 66766655422221111111111111222344555555544433322 22455666677777777887777777666554
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 016027 173 EGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTY 252 (396)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 252 (396)
.. ....+..+...+...|++++|...|+++.+..+. +...|+.+...+...|+..+|...|.+..... +|-+.++
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 31 1245666777788888888888888888876553 66778888888888888888888888877764 4566667
Q ss_pred HHHHHHHhc
Q 016027 253 NYFFRYFSK 261 (396)
Q Consensus 253 ~~l~~~~~~ 261 (396)
..|...+.+
T Consensus 224 ~nL~~~~~~ 232 (497)
T d1ya0a1 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.76 E-value=6.3e-08 Score=69.38 Aligned_cols=96 Identities=15% Similarity=0.040 Sum_probs=58.6
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCC-CCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPD-FVS-----------KDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG 71 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 71 (396)
.+.+.|++.+|+..|.+++....... ..+ ..++..++.+|.+.|++++|+..++++...+ |.+
T Consensus 26 ~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-----p~~ 100 (153)
T d2fbna1 26 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-----KNN 100 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-----chh
Confidence 46678888888888888875322111 101 1234456666666666666666666666654 556
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
..+|..++.++...|++++|+..|+++.+.+|+
T Consensus 101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666666665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.68 E-value=2.6e-07 Score=67.28 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=49.3
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCch
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFV-----------SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGA 72 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 72 (396)
.+.+.|++.+|...|.+++..-...... ...+|..++.+|...|++++|+..++++...+ |.+.
T Consensus 24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-----p~~~ 98 (168)
T d1kt1a1 24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-----SANE 98 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-----cchH
Confidence 4567778888888777766421111100 01223344555555555555555555555543 4555
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 73 SLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
.++..++.++...|++++|...|+++...+
T Consensus 99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.67 E-value=5.8e-07 Score=64.19 Aligned_cols=101 Identities=12% Similarity=-0.028 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCc-----------hhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSG-----------ASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
.+..-+..+.+.|++.+|+..|.++...-......++ ..++..++.+|.+.|++++|++.++.+...+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 5667788899999999999999998875321111111 12444555556666666666666666655543
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
. +..+|..++.++...|++++|+..|++..+.
T Consensus 99 ~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 99 N---NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred h---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 5555666666666666666666666665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.8e-07 Score=63.70 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCC---hHHHHHHHHHHhhccCCCCCC-hHHHH
Q 016027 38 ILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGR---VKAASEYFHKRKELDQSWAPT-VRVYN 113 (396)
Q Consensus 38 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~-~~~~~ 113 (396)
.++..+...+++++|.+.|+++...+ |.++.++..++.++.+.++ +++|+++|+++...++. |+ ..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~--~~~~~~~~ 76 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVF 76 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC--chHHHHHH
Confidence 45556666666666666666666654 5666666666666655433 33466666666554211 21 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
.+..+|.+.|++++|++.|+++++.
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5666666666666666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.66 E-value=1.7e-06 Score=62.75 Aligned_cols=116 Identities=12% Similarity=-0.038 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccC-C---------CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKN-F---------DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
..+...+..+.+.|++++|+..|++++..-.... . +....+|..++.+|.+.|++++|+..++.+...+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 4677888999999999999999998886432110 0 00123455566666777777777777777776654
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 016027 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEG 153 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (396)
. +..+|..+..++...|++++|...|+++++..+. +......+..+
T Consensus 96 ~---~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 141 (168)
T d1kt1a1 96 A---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMC 141 (168)
T ss_dssp T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4 6666777777777777777777777776665322 44444444333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.65 E-value=1.1e-07 Score=69.51 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=53.1
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC--------------CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCC
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE--------------VPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNF 68 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~--------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 68 (396)
..+.+.|++++|+..|.+++.... .|. ....+..++.++.+.|++++|+..++++++..
T Consensus 35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~----- 107 (169)
T d1ihga1 35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEALEID----- 107 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChh--hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-----
Confidence 356678888888888877764100 111 12344445555555555555555555555543
Q ss_pred CCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 69 DSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
|.++.+|..++.++...|++++|++.|+++.+.+|
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.63 E-value=6.4e-07 Score=65.27 Aligned_cols=101 Identities=13% Similarity=-0.008 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVK-----------NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQ 103 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 103 (396)
.+...+..+...|++++|++.|+++++..... ..|....++..++.++.+.|++++|+..++++.+.+|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 45567788889999999999999887532100 0122333444455555555555555555555555443
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 104 SWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
. +...|..+..++...|++++|+..|++..+.
T Consensus 109 ~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 109 S---NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h---hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 4455555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.61 E-value=1.6e-07 Score=66.43 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=71.7
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcccccCCCCchh
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARA----------GMVEAAIWTFEFANNLDMVKNFDSGAS 73 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 73 (396)
-|-+.+.|++|+..|+.+++. .|+ +..++..++.++... +.+++|+..|+++.+.+ |.++.
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-----P~~~~ 76 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--NPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-----PKKDE 76 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--CTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----TTCHH
T ss_pred HHHHHccHHHHHHHHHHHHhh--CCc--chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-----chhhH
Confidence 456788999999999999985 566 577999999998854 45578999999999886 88888
Q ss_pred HHHHHHHHHHHcCC-----------hHHHHHHHHHHhhccC
Q 016027 74 LFEILLDSLCKQGR-----------VKAASEYFHKRKELDQ 103 (396)
Q Consensus 74 ~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~ 103 (396)
+|..++.+|...|+ +++|.+.|+++...+|
T Consensus 77 a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 77 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 99999998877653 4667777777766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.57 E-value=2.8e-07 Score=65.09 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=68.1
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHc----------CChHHHHHHHHHHhhccCCCCCChHHH
Q 016027 43 YARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQ----------GRVKAASEYFHKRKELDQSWAPTVRVY 112 (396)
Q Consensus 43 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~ 112 (396)
|-+.+.+++|++.|+++.+.+ |.++.++..++.++... +.+++|++.|+++.+.+|. +..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~---~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch---hhHHH
Confidence 456778999999999999986 89999999999998754 4457889999999888665 77788
Q ss_pred HHHHHHHHhcCC-----------hhHHHHHHHHHHhC
Q 016027 113 NILLNGWFRSKN-----------VKDAERFWLEMRKE 138 (396)
Q Consensus 113 ~~l~~~~~~~~~-----------~~~a~~~~~~~~~~ 138 (396)
..+..+|...|+ +++|.+.|++.++.
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 888888776543 45555666655553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=8.9e-07 Score=61.00 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC-----hhHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVT-PN-----VVTYG 148 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~ 148 (396)
+..++..+...|++++|++.|+++...+|. +..++..+..+|.+.|++++|+..++++++.... +. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 556788888888888888888888887654 6778888888888888888888888887764211 01 13455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 149 TLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 149 ~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+...+...+++++|+..|+.....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5666667777777777777776654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.48 E-value=4.3e-06 Score=61.02 Aligned_cols=127 Identities=13% Similarity=-0.008 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHH
Q 016027 34 DTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYN 113 (396)
Q Consensus 34 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 113 (396)
..+...+......|++++|.+.|.++...-.-. ...+. ..+.+ +...-..+... ....+.
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l~~~-----------~~~~w--~~~~r~~l~~~------~~~a~~ 71 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLDDL-----------RDFQF--VEPFATALVED------KVLAHT 71 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGG-----------TTSTT--HHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-ccccC-----------cchHH--HHHHHHHHHHH------HHHHHH
Confidence 356677788999999999999999998863110 00000 00011 11111111111 234556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 016027 114 ILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRK-----EGIEPNAIV 181 (396)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 181 (396)
.++..+...|++++|+..++.++...+. +...|..++.++...|+..+|++.|+++.+ .|+.|...+
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 6666666777777777777766665432 666667777777777777777776666533 366666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.45 E-value=2e-07 Score=72.99 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=74.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh
Q 016027 42 RYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFR 121 (396)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 121 (396)
-..+.|++++|+..+++..+.. |.+...+..++..++..|++++|.+.|+.+.+.+|. +...+..+...+..
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-----P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~---~~~~~~~l~~ll~a 76 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-----PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHLVKA 76 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHh
Confidence 3456788888888888888765 778888888888888888888888888888877544 34444444444433
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 016027 122 SKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKE 173 (396)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 173 (396)
.+..+++..-.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3333322221111111111222233334445566667777777777666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.41 E-value=3e-07 Score=71.87 Aligned_cols=124 Identities=14% Similarity=-0.003 Sum_probs=92.8
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLC 83 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (396)
-..+.|++++|+..+.+.++. .|+ +...+..++..++..|++++|++.|+.+.+.. |.+...+..+...+.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~--~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-----P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKA--SPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRHLVK 75 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHH
Confidence 456789999999999999985 565 47899999999999999999999999999985 666777777777766
Q ss_pred HcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 016027 84 KQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKE 138 (396)
Q Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (396)
..+..+++.......... ..+++...+...+..+...|+.++|.+.++++.+.
T Consensus 76 a~~~~~~a~~~~~~~~~~--~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 76 AAQARKDFAQGAATAKVL--GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHTTSCCCEECC--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHhhhhhcc--cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 555555443322221111 21223344555667788899999999999998775
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=0.00027 Score=56.65 Aligned_cols=272 Identities=11% Similarity=0.058 Sum_probs=156.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHH
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSL 82 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (396)
+.|.+.|.++.|..+|... .+ |..++..+.+.++++.|.+.+.+.. ++.+|..+...+
T Consensus 22 ~~c~~~~lye~A~~lY~~~------~d------~~rl~~~~v~l~~~~~avd~~~k~~----------~~~~~k~~~~~l 79 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNV------SN------FGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFAC 79 (336)
T ss_dssp -------CTTTHHHHHHHT------TC------HHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhC------CC------HHHHHHHHHhhccHHHHHHHHHHcC----------CHHHHHHHHHHH
Confidence 4566889999998887542 23 7788899999999999988887553 346788899999
Q ss_pred HHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHH
Q 016027 83 CKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDR 162 (396)
Q Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (396)
.+.....-|.-+ .. ....+......++..|-..|.+++...+++..... -.++...++.++..|++.+ .++
T Consensus 80 ~~~~e~~la~i~-----~~--~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 80 VDGKEFRLAQMC-----GL--HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHTTCHHHHHHT-----TT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH
T ss_pred HhCcHHHHHHHH-----HH--HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH
Confidence 888776554221 11 22235556678889999999999999999987654 3457778889999998865 344
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCchhhHHHHHHHHHhcCChHHHH
Q 016027 163 AIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLVCE--------PGPTMVTYTSLVKGYCKAGDLEGAS 234 (396)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~ 234 (396)
..+. +...+...+ ...++..|.+.+-++++.-++.++.... ..++..-....+..+.+..+++...
T Consensus 151 l~e~---l~~~s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 151 MREH---LELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp HHHH---HHHHSTTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHH---HHhccccCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHH
Confidence 4433 333221222 2234455555555555555555432100 1122222233344444444444444
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016027 235 KILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCRG 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 314 (396)
++.....+. ++...+.++......-+. ..++..+.+.+++......++.....+
T Consensus 225 ~~i~~yL~~----~p~~i~~lL~~v~~~~d~----------------------~r~V~~~~k~~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 225 RAIQFYLEF----KPLLLNDLLMVLSPRLDH----------------------TRAVNYFSKVKQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp HHHHHHHHH----CGGGHHHHHHHHGGGCCH----------------------HHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHc----CHHHHHHHHHHhccCCCH----------------------HHHHHHHHhcCCcHHHHHHHHHHHHcC
Confidence 443333321 112223333332222222 234445555666666667777766544
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHH
Q 016027 315 CDIDLDTSTMLIHLLCRMYKFDEASA 340 (396)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~a~~ 340 (396)
+..+.+++...|...++++.-..
T Consensus 279 ---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 279 ---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---hHHHHHHHHHHHhCcchhHHHHH
Confidence 45678888888888888655333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.35 E-value=1.8e-05 Score=57.68 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 016027 75 FEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGY 154 (396)
Q Consensus 75 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (396)
....+......|++++|.+.|..+....+|.... ......-+...-..+... ....+..+...+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~ 77 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVED----KVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4456678889999999999999999876553211 011111111111222221 345678899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCchhhHHH
Q 016027 155 CRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVEAGRFEEVSGMMERFLV-----CEPGPTMVTYTS 219 (396)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 219 (396)
...|++++|+..++++++.. +-+...|..++.++.+.|+.++|++.|+++.. .|+.|+..+-..
T Consensus 78 ~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 99999999999999999985 66888999999999999999999999999744 588888765443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4e-06 Score=54.01 Aligned_cols=82 Identities=17% Similarity=-0.014 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--CCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCh
Q 016027 32 SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK--NFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTV 109 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (396)
|.+.+..++..+.+.|++++|+..|+++.+..... ..+....++..++.++.+.|++++|++.++++.+.+|. +.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~---~~ 80 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE---HQ 80 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC---CH
Confidence 45678899999999999999999999998764321 12234678899999999999999999999999998765 55
Q ss_pred HHHHHHH
Q 016027 110 RVYNILL 116 (396)
Q Consensus 110 ~~~~~l~ 116 (396)
.+++.+.
T Consensus 81 ~a~~Nl~ 87 (95)
T d1tjca_ 81 RANGNLK 87 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.15 E-value=1.5e-05 Score=56.78 Aligned_cols=102 Identities=12% Similarity=-0.014 Sum_probs=67.3
Q ss_pred hHHHHH--HHHHHHcCCHHHHHHHHHHHhhcccccCCCC---------chhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 34 DTFVIL--IRRYARAGMVEAAIWTFEFANNLDMVKNFDS---------GASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 34 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
.++..+ +..+.+.|++++|++.|++++..... .|. ...+|+.++.+|.+.|++++|.+.++++....
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~--~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT--MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChh--hhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 355555 56677889999999999999876432 111 23567788888888888888888888876542
Q ss_pred CC---CCCC-----hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 016027 103 QS---WAPT-----VRVYNILLNGWFRSKNVKDAERFWLEMRK 137 (396)
Q Consensus 103 ~~---~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (396)
+. ..++ ...++.+..+|...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111 22455666777777777777777776553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.10 E-value=5.4e-06 Score=59.24 Aligned_cols=100 Identities=17% Similarity=-0.047 Sum_probs=75.2
Q ss_pred hhhhhccCchhHHHHHHHHhCCCC-CCCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--CCC---
Q 016027 3 KVLAKAKEFDSAWCLLLDKIGGHE-VPDFV-------SKDTFVILIRRYARAGMVEAAIWTFEFANNLDMVK--NFD--- 69 (396)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~--- 69 (396)
..+.+.|++++|+..|.++++... .|+.. ...+|..++.+|...|++++|+..+++++...... ..+
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 356678999999999999986322 12111 13578899999999999999999999998753211 001
Q ss_pred -CchhHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q 016027 70 -SGASLFEILLDSLCKQGRVKAASEYFHKRKELD 102 (396)
Q Consensus 70 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 102 (396)
....+++.++.+|...|++++|++.|+++.+..
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 123367889999999999999999999987763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=5.1e-05 Score=48.61 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCC---CCC-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH
Q 016027 72 ASLFEILLDSLCKQGRVKAASEYFHKRKELDQSW---APT-VRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTY 147 (396)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (396)
+..+..++..+.+.|++++|..+|+++.+..+.. .++ ..+++.+..++.+.|++++|+..|+++++..+. +..++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHH
Confidence 3446678889999999999999999887664332 122 467888888888899999999998888876433 44455
Q ss_pred HHH
Q 016027 148 GTL 150 (396)
Q Consensus 148 ~~l 150 (396)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.39 E-value=0.0052 Score=41.68 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHc
Q 016027 160 VDRAIRLVKEMRKE 173 (396)
Q Consensus 160 ~~~a~~~~~~~~~~ 173 (396)
.++|.++|++..+.
T Consensus 75 ~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 75 LRKAAQYYSKACGL 88 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHhhhhcc
Confidence 34444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.32 E-value=0.0097 Score=40.24 Aligned_cols=81 Identities=17% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCC
Q 016027 263 GKVEDAMNLYRKMIESGYTPDRLTYHILLKILCK----EDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCR----MYK 334 (396)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 334 (396)
.+.++|..++++..+.| ++.....|...|.. ..+.++|.++|++..+.+ ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555554443 22333333333332 234455555555555443 33334444444433 234
Q ss_pred hhHHHHHHHHHHHCC
Q 016027 335 FDEASAEFEDMIRRG 349 (396)
Q Consensus 335 ~~~a~~~~~~~~~~~ 349 (396)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.012 Score=38.56 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHcC---CHHHHHHHHHHHhhcccccCCCCc-hhHHHHHHHHHHHcCChHHHHHHHHHHhhccCC
Q 016027 32 SKDTFVILIRRYARAG---MVEAAIWTFEFANNLDMVKNFDSG-ASLFEILLDSLCKQGRVKAASEYFHKRKELDQS 104 (396)
Q Consensus 32 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (396)
+..+-...+-++++.. +.++++.+|+.+.+.+ |.+ ...+..|+.+|.+.|++++|.+.++.+.+.+|+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-----p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3677777777777654 4567888888887653 433 356777888888888888888888888887554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.24 Score=41.22 Aligned_cols=352 Identities=8% Similarity=-0.024 Sum_probs=190.8
Q ss_pred hhhhccCchhHHHHHHHHhCCCCCCCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHH
Q 016027 4 VLAKAKEFDSAWCLLLDKIGGHEVPDFVSKDTFVILIRRYA--RAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDS 81 (396)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (396)
-..++|+...+.++... ++. .| ...|...-..-. .....++...++++-.. .|....+....+..
T Consensus 15 ~a~~~~~~~~~~~~~~~-L~d--yp----L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~------~P~~~~lr~~~l~~ 81 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPG-LKD--YP----LYPYLEYRQITDDLMNQPAVTVTNFVRANPT------LPPARTLQSRFVNE 81 (450)
T ss_dssp HHHHTTCHHHHHHHSGG-GTT--ST----THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhh-hcC--CC----CHHHHHHHHHHhccccCCHHHHHHHHHHCCC------ChhHHHHHHHHHHH
Confidence 35567888887765433 332 23 223433333222 23355555554443222 13333444555667
Q ss_pred HHHcCChHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHH------
Q 016027 82 LCKQGRVKAASEYFHKRKELDQSWAPTVRVYNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYC------ 155 (396)
Q Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 155 (396)
+.+.++++..+..+ +..+++...-...+.+....|+..+|...+..+-..|.. ....+..+...+.
T Consensus 82 L~~~~~w~~~~~~~-------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 82 LARREDWRGLLAFS-------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHTTCHHHHHHHC-------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSC
T ss_pred HHhccCHHHHHHhc-------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCC
Confidence 77777776644333 122335555556667777778777777776665544322 2222233333222
Q ss_pred ------------ccCCHHHHHHHHHHH--------------HHc---------CCCCCHHHHHHHHHHHHH--cCCHHHH
Q 016027 156 ------------RLRRVDRAIRLVKEM--------------RKE---------GIEPNAIVYNTVIDGLVE--AGRFEEV 198 (396)
Q Consensus 156 ------------~~~~~~~a~~~~~~~--------------~~~---------~~~~~~~~~~~l~~~~~~--~~~~~~a 198 (396)
..|++..|..+...+ .+. ....+......+..++.+ ..+.+.+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a 233 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENA 233 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHH
Confidence 223333333222211 000 011122222222222222 2466777
Q ss_pred HHHHHHHHhcCCCCchhhHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 016027 199 SGMMERFLVCEPGPTMVTYTSL----VKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRK 274 (396)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 274 (396)
..++......... +...+..+ .......+..+.+...+......+ .+.......+......+++..+...+..
T Consensus 234 ~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~ 310 (450)
T d1qsaa1 234 RLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR 310 (450)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHh
Confidence 7777776554332 22222222 222234456677777777766653 2444444555556677899998888887
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCCCC----------hhh-----HHHHHH
Q 016027 275 MIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKCR------------GCDID----------LDT-----STMLIH 327 (396)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~----------~~~-----~~~l~~ 327 (396)
+... ..........+.+++...|+.+.|...|..+... |.+++ ... -..-+.
T Consensus 311 l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~ 389 (450)
T d1qsaa1 311 LPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVR 389 (450)
T ss_dssp SCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHH
T ss_pred cCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHH
Confidence 6433 2223445566788899999999999998886431 11100 000 112345
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 328 LLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 328 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
.+...|....|...|..+... .+......+.....+.|.++.|+....+....
T Consensus 390 ~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~ 442 (450)
T d1qsaa1 390 ELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLW 442 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred HHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHcc
Confidence 677889999999998888753 24556667778888999999999887776543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.037 Score=36.21 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 301 DLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
++++.+++++.+.++.-....+-.|..+|.+.|++++|.+.++.+++
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34555555554432111123334444455555555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.50 E-value=0.16 Score=32.92 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=84.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 016027 224 YCKAGDLEGASKILKMMISRGFLPSPTTYNYFFRYFSKFGKVEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLA 303 (396)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 303 (396)
+.-.|..++..+++.+..... +..-||.++--....-+-+...++++.+-+. .|. ..++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 344677778888877777642 4556666666666666666666666665432 111 112222222
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 016027 304 IQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSSV 383 (396)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 383 (396)
...+-.+ ..+...+...++.+...|+-+.-.+++..+.+.+ .|++.....+..+|.+.|...++-+++.+.-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222211 1144555666677777788788778877776644 677777778888888888888888888776554
Q ss_pred c
Q 016027 384 P 384 (396)
Q Consensus 384 ~ 384 (396)
+
T Consensus 150 G 150 (161)
T d1wy6a1 150 G 150 (161)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.58 Score=38.74 Aligned_cols=316 Identities=9% Similarity=-0.010 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccCCCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCChHHHHH
Q 016027 35 TFVILIRRYARAGMVEAAIWTFEFANNLDMVKNFDSGASLFEILLDSLCKQGRVKAASEYFHKRKELDQSWAPTVRVYNI 114 (396)
Q Consensus 35 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 114 (396)
..+..+.-..+.|+..++.++...+.. .|.-+.+-..-+..........+....++. .|+.+........
T Consensus 8 ~~y~~a~~a~~~~~~~~~~~~~~~L~d------ypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~----~p~~P~~~~lr~~ 77 (450)
T d1qsaa1 8 SRYAQIKQAWDNRQMDVVEQMMPGLKD------YPLYPYLEYRQITDDLMNQPAVTVTNFVRA----NPTLPPARTLQSR 77 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTT------STTHHHHHHHHHHHTGGGCCHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhhhcC------CCCHHHHHHHHHHhccccCCHHHHHHHHHH----CCCChhHHHHHHH
Confidence 344666777899999998888776643 243332222222222233455555444433 3333333334455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 016027 115 LLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEGIEPNAIVYNTVIDGLVE--- 191 (396)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 191 (396)
.+..+.+.+++...+..+. ..+.+...-...+.+....|+..+|...+..+-..| ...+..+..+...+..
T Consensus 78 ~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCC
Confidence 6677888888877555442 223455555677788888899888888877776554 2222333333333333
Q ss_pred ---------------cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 016027 192 ---------------AGRFEEVSGMMERFLVCEPGPTMVTYTSLVKGYCKAGDLEGASKILKMMISRGFLPSPTTYNYFF 256 (396)
Q Consensus 192 ---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 256 (396)
.|++..|..+...+ ...........+.... +...+.... ... .++......+.
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l----~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~ 219 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQM----PADYQTIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAA 219 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTC----CGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhC----ChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHH
Confidence 34444444433321 1111112222222221 111211111 111 11222222222
Q ss_pred HHHhc--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 016027 257 RYFSK--FGKVEDAMNLYRKMIESGYTPDRLTYHILLK----ILCKEDKLDLAIQVSKEMKCRGCDIDLDTSTMLIHLLC 330 (396)
Q Consensus 257 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 330 (396)
.++.+ ..+.+.+..++......... +..-...... .....+..+.+...+......+ .+.......+....
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al 296 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMAL 296 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHH
Confidence 22222 24566666666665543211 2222221111 2223344555655555554432 23344444444455
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 016027 331 RMYKFDEASAEFEDMIRRGLVPHYLTFKRLNDEFKKRGMTALAQKLCNVMSS 382 (396)
Q Consensus 331 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 382 (396)
..+++..+...+..|... ..-...-..=+..++...|+.++|..+|..+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 297 GTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 566777776666655321 111122222344566677777777777776543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.47 E-value=0.14 Score=31.30 Aligned_cols=48 Identities=8% Similarity=-0.110 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 016027 300 LDLAIQVSKEMKCRGCDIDLDTSTMLIHLLCRMYKFDEASAEFEDMIR 347 (396)
Q Consensus 300 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 347 (396)
.-+..+-+..+.....-|++.+..+.+++|-+.+++..|.++|+-...
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455554444555555555555555555555555555555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.23 E-value=0.39 Score=31.11 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 016027 112 YNILLNGWFRSKNVKDAERFWLEMRKENVTPNVVTYGTLVEGYCRLRRVDRAIRLVKEMRKEG 174 (396)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 174 (396)
....++.+.++|+-++-.++++.+.+. -+|++.....+..+|.+.|...++-+++.+..+.|
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444444444444444443332 23344444444444444444444444444444444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.33 E-value=1.4 Score=26.85 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016027 265 VEDAMNLYRKMIESGYTPDRLTYHILLKILCKEDKLDLAIQVSKEMKC 312 (396)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 312 (396)
.-++.+-+..+...+..|++....+.+++|.+.+++..|.++++-++.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555555555555666666666666666666666666655554
|