Citrus Sinensis ID: 016073

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MASSSSLSPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADGF
cccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEccccccccccccccEEEcccccccEEEEEEccccEEEEEccccccccEEEEcccccHHHHHHHcccccEEEHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccc
cccccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccHccccccccccEcccccEEEEcccccccEEEEEEcccccEEEEEccccHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEcccccccccHccHHHHHcccccccccHHcHHHHHHHccEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEcccccccccEcccccEEEEEEcEEEccEEccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccEcccccccccccccccccccccccc
masssslsppkvpkelyFINREKVLNSLRQHLtetsrplhGFVLlqggeeqtrYCTDHLELFRQESYFAYLFgvrepgfygaidiatgksilfaprlppdyavwlgkikplsYFQEKYMVNMVYYTDEIVGVLqghykepgkpLLFLLHglntdsnnfskpaqfegMEKFETELNTLHPilsecrvfkSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHhtymyggcrhcsytcicatgensavlhyghaaapndrtfedgdMALLDMGaeyqfygsditcsfpvngkftsdQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAvfmphglghflgidthdpggypkVYMIKLTADGF
masssslsppkvpkELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFandisseahVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADGF
MAsssslsPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADGF
***************LYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDS**********GMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLT****
**************ELYFINREKVLNSLRQHL***SRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADGF
***********VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADGF
*********PKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYP************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooo
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MASSSSLSPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
P12955493 Xaa-Pro dipeptidase OS=Ho yes no 0.926 0.744 0.574 1e-125
Q5RFB3493 Xaa-Pro dipeptidase OS=Po yes no 0.926 0.744 0.571 1e-124
Q11136493 Xaa-Pro dipeptidase OS=Mu yes no 0.929 0.746 0.568 1e-123
Q5I0D7492 Xaa-Pro dipeptidase OS=Ra yes no 0.929 0.747 0.565 1e-123
Q55E60501 Xaa-Pro dipeptidase OS=Di yes no 0.949 0.750 0.453 4e-96
B2WMQ2463 Probable Xaa-Pro aminopep N/A no 0.835 0.714 0.362 1e-55
C9SDK8460 Probable Xaa-Pro aminopep N/A no 0.835 0.719 0.371 1e-54
A7UWH7468 Probable Xaa-Pro aminopep N/A no 0.871 0.737 0.353 2e-54
E3S6N7463 Probable Xaa-Pro aminopep N/A no 0.830 0.710 0.358 1e-53
D1ZQL9467 Probable Xaa-Pro aminopep N/A no 0.871 0.738 0.347 1e-52
>sp|P12955|PEPD_HUMAN Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3 Back     alignment and function desciption
 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/376 (57%), Positives = 268/376 (71%), Gaps = 9/376 (2%)

Query: 11  KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
           KVP  L+ +NR+++   LR++    +  +   V+LQGGEE  RYCTD   LFRQES+F +
Sbjct: 17  KVPLALFALNRQRLCERLRKNPAVQAGSI---VVLQGGEETQRYCTDTGVLFRQESFFHW 73

Query: 71  LFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIV 130
            FGV EPG YG ID+ TGKS LF PRLP  +A W+GKI    +F+EKY V+ V Y DEI 
Sbjct: 74  AFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIA 133

Query: 131 GVLQGHYKEPGKP-LLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKS 189
            VL        KP +L  L G+NTDS +  + A F+G+ KFE     LHP + ECRVFK+
Sbjct: 134 SVLTSQ-----KPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKT 188

Query: 190 DHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATG 249
           D EL ++++ N ISSEAH EVMK  +VGMKEY++ES+F H+ Y  GG RH SYTCIC +G
Sbjct: 189 DMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSG 248

Query: 250 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 309
           ENSAVLHYGHA APNDRT ++GDM L DMG EY  + SDITCSFP NGKFT+DQ  +Y A
Sbjct: 249 ENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEA 308

Query: 310 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
           VL++  AV+ AMKPGV W DMH+LA++I LE L   G++ G+VD M+ A LGAVFMPHGL
Sbjct: 309 VLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGL 368

Query: 370 GHFLGIDTHDPGGYPK 385
           GHFLGID HD GGYP+
Sbjct: 369 GHFLGIDVHDVGGYPE 384
Splits dipeptides with a prolyl or hydroxyprolyl residue in the C-terminal position. Plays an important role in collagen metabolism because the high level of iminoacids in collagen.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 1EC: 3EC: .EC: 9
>sp|Q5RFB3|PEPD_PONAB Xaa-Pro dipeptidase OS=Pongo abelii GN=PEPD PE=2 SV=1 Back     alignment and function description
>sp|Q11136|PEPD_MOUSE Xaa-Pro dipeptidase OS=Mus musculus GN=Pepd PE=2 SV=3 Back     alignment and function description
>sp|Q5I0D7|PEPD_RAT Xaa-Pro dipeptidase OS=Rattus norvegicus GN=Pepd PE=2 SV=1 Back     alignment and function description
>sp|Q55E60|PEPD_DICDI Xaa-Pro dipeptidase OS=Dictyostelium discoideum GN=pepd PE=1 SV=1 Back     alignment and function description
>sp|B2WMQ2|AMPP3_PYRTR Probable Xaa-Pro aminopeptidase pepP OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=pepP PE=3 SV=1 Back     alignment and function description
>sp|C9SDK8|AMPP2_VERA1 Probable Xaa-Pro aminopeptidase VDBG_02538 OS=Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) GN=VDBG_02538 PE=3 SV=1 Back     alignment and function description
>sp|A7UWH7|AMPP2_NEUCR Probable Xaa-Pro aminopeptidase NCU11288 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU11288 PE=3 SV=1 Back     alignment and function description
>sp|E3S6N7|AMPP3_PYRTT Probable Xaa-Pro aminopeptidase pepP OS=Pyrenophora teres f. teres (strain 0-1) GN=pepP PE=3 SV=1 Back     alignment and function description
>sp|D1ZQL9|AMPP2_SORMK Probable Xaa-Pro aminopeptidase SMAC_04549 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=SMAC_04549 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
224088005488 predicted protein [Populus trichocarpa] 0.972 0.788 0.857 0.0
359484508 509 PREDICTED: xaa-Pro dipeptidase-like [Vit 0.962 0.748 0.850 0.0
255546201494 xaa-pro dipeptidase, putative [Ricinus c 0.972 0.779 0.823 0.0
449489859494 PREDICTED: xaa-Pro dipeptidase-like [Cuc 0.967 0.775 0.806 0.0
145348919486 Xaa-Pro dipeptidase [Arabidopsis thalian 0.962 0.783 0.797 0.0
22531162486 X-Pro dipeptidase-like protein [Arabidop 0.962 0.783 0.797 0.0
449435826494 PREDICTED: LOW QUALITY PROTEIN: xaa-Pro 0.967 0.775 0.798 0.0
297803092486 X-Pro dipeptidase [Arabidopsis lyrata su 0.962 0.783 0.790 0.0
359806866477 uncharacterized protein LOC100793240 [Gl 0.936 0.777 0.805 0.0
242061026 510 hypothetical protein SORBIDRAFT_04g00796 0.972 0.754 0.757 1e-180
>gi|224088005|ref|XP_002308288.1| predicted protein [Populus trichocarpa] gi|222854264|gb|EEE91811.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/385 (85%), Positives = 354/385 (91%)

Query: 1   MASSSSLSPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLE 60
           MASSS L PPKVP EL+  NREK+L SLRQHLTETSRPLHGFV LQGGEE+TRYCTDH+E
Sbjct: 1   MASSSRLPPPKVPMELHAKNREKLLKSLRQHLTETSRPLHGFVFLQGGEEKTRYCTDHIE 60

Query: 61  LFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMV 120
           LFRQESYFAYLFGV+EPGFYGAIDIATGKSILFAPRLP DYAVWLG+IKP S FQ++YMV
Sbjct: 61  LFRQESYFAYLFGVKEPGFYGAIDIATGKSILFAPRLPADYAVWLGEIKPSSCFQQQYMV 120

Query: 121 NMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPI 180
           +MVYYTDEIVGVL        KPLLFLLHGLNTDSNNFSKPA+FEG+EKFE +L TLHPI
Sbjct: 121 SMVYYTDEIVGVLHELSNVLEKPLLFLLHGLNTDSNNFSKPAEFEGIEKFEKDLTTLHPI 180

Query: 181 LSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHC 240
           L+ECRV KSD ELALIQFANDISSEAHVEVM+KTRVGM+EYQ+ES+FLHHTYMYGGCRHC
Sbjct: 181 LTECRVLKSDMELALIQFANDISSEAHVEVMRKTRVGMEEYQLESIFLHHTYMYGGCRHC 240

Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
           SYTCICATGENSAVLHYGHAAAPNDRT +DGDMAL DMGAEYQFYGSDITCSFPVNGKFT
Sbjct: 241 SYTCICATGENSAVLHYGHAAAPNDRTLQDGDMALFDMGAEYQFYGSDITCSFPVNGKFT 300

Query: 301 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 360
           SDQSLIYNAVL AHNAVI+AMKPGV WVDMHKLAE++ILESLK G ++VGNVD+MM  RL
Sbjct: 301 SDQSLIYNAVLDAHNAVISAMKPGVSWVDMHKLAEQLILESLKNGCIIVGNVDDMMIERL 360

Query: 361 GAVFMPHGLGHFLGIDTHDPGGYPK 385
           GAVFMPHGLGHFLGIDTHDPGGY K
Sbjct: 361 GAVFMPHGLGHFLGIDTHDPGGYLK 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484508|ref|XP_002282779.2| PREDICTED: xaa-Pro dipeptidase-like [Vitis vinifera] gi|297738698|emb|CBI27943.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546201|ref|XP_002514160.1| xaa-pro dipeptidase, putative [Ricinus communis] gi|223546616|gb|EEF48114.1| xaa-pro dipeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449489859|ref|XP_004158440.1| PREDICTED: xaa-Pro dipeptidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|145348919|ref|NP_194678.2| Xaa-Pro dipeptidase [Arabidopsis thaliana] gi|110742445|dbj|BAE99141.1| putative prolidase [Arabidopsis thaliana] gi|332660237|gb|AEE85637.1| Xaa-Pro dipeptidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22531162|gb|AAM97085.1| X-Pro dipeptidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449435826|ref|XP_004135695.1| PREDICTED: LOW QUALITY PROTEIN: xaa-Pro dipeptidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297803092|ref|XP_002869430.1| X-Pro dipeptidase [Arabidopsis lyrata subsp. lyrata] gi|297315266|gb|EFH45689.1| X-Pro dipeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359806866|ref|NP_001241060.1| uncharacterized protein LOC100793240 [Glycine max] gi|255637035|gb|ACU18850.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|242061026|ref|XP_002451802.1| hypothetical protein SORBIDRAFT_04g007960 [Sorghum bicolor] gi|241931633|gb|EES04778.1| hypothetical protein SORBIDRAFT_04g007960 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2118284486 AT4G29490 [Arabidopsis thalian 0.952 0.775 0.795 7.4e-169
UNIPROTKB|P12955493 PEPD "Xaa-Pro dipeptidase" [Ho 0.929 0.746 0.573 8.2e-115
UNIPROTKB|F1NIQ9 497 PEPD "Uncharacterized protein" 0.929 0.740 0.570 2.8e-114
UNIPROTKB|F6Q234493 PEPD "Uncharacterized protein" 0.929 0.746 0.570 3.5e-114
MGI|MGI:97542493 Pepd "peptidase D" [Mus muscul 0.929 0.746 0.568 2.5e-113
RGD|1594571492 Pepd "peptidase D" [Rattus nor 0.929 0.747 0.565 1.4e-112
UNIPROTKB|Q5I0D7492 Pepd "Xaa-Pro dipeptidase" [Ra 0.929 0.747 0.565 1.4e-112
ZFIN|ZDB-GENE-030131-9444496 pepd "peptidase D" [Danio reri 0.929 0.741 0.533 6.3e-108
FB|FBgn0000455491 Dip-C "Dipeptidase C" [Drosoph 0.934 0.753 0.503 3.8e-101
WB|WBGene00019673 498 K12C11.1 [Caenorhabditis elega 0.926 0.736 0.509 5e-99
TAIR|locus:2118284 AT4G29490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 300/377 (79%), Positives = 336/377 (89%)

Query:     9 PPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF 68
             PP +P EL+  NR+K+L S+R+ L+ ++R L GFVLLQGGEE+ RYCTDH ELFRQESYF
Sbjct:     6 PPPIPMELHAGNRKKLLESIRRQLSSSNRSLDGFVLLQGGEEKNRYCTDHTELFRQESYF 65

Query:    69 AYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDE 128
             AYLFGVREP FYGAIDI +GKSILF PRLP DYAVWLG+IKPLS+F+E YMV+MV+Y DE
Sbjct:    66 AYLFGVREPDFYGAIDIGSGKSILFIPRLPDDYAVWLGEIKPLSHFKETYMVDMVFYVDE 125

Query:   129 IVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFK 188
             I+ V    +K  GKPLL+LLHGLNTDS+NFSKPA FEG++KFET+L TLHPIL+ECRV K
Sbjct:   126 IIQVFNEQFKGSGKPLLYLLHGLNTDSSNFSKPASFEGIDKFETDLTTLHPILAECRVIK 185

Query:   189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
             S  EL LIQFANDISSEAH+EVM+K   GMKEYQMESMFLHH+YMYGGCRHCSYTCICAT
Sbjct:   186 SSLELQLIQFANDISSEAHIEVMRKVTPGMKEYQMESMFLHHSYMYGGCRHCSYTCICAT 245

Query:   249 GENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN 308
             G+NSAVLHYGHAAAPNDRTFEDGD+ALLDMGAEY FYGSDITCSFPVNGKFTSDQSLIYN
Sbjct:   246 GDNSAVLHYGHAAAPNDRTFEDGDLALLDMGAEYHFYGSDITCSFPVNGKFTSDQSLIYN 305

Query:   309 AVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHG 368
             AVL AHN+VI+AMKPGV WVDMHKLAEKIILESLKKG ++ G+VD+MM  RLGAVFMPHG
Sbjct:   306 AVLDAHNSVISAMKPGVNWVDMHKLAEKIILESLKKGSILTGDVDDMMVQRLGAVFMPHG 365

Query:   369 LGHFLGIDTHDPGGYPK 385
             LGHF+GIDTHD GGYPK
Sbjct:   366 LGHFMGIDTHDTGGYPK 382
GO:0004177 "aminopeptidase activity" evidence=IEA
GO:0009987 "cellular process" evidence=IEA
GO:0030145 "manganese ion binding" evidence=IEA
UNIPROTKB|P12955 PEPD "Xaa-Pro dipeptidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ9 PEPD "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6Q234 PEPD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:97542 Pepd "peptidase D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1594571 Pepd "peptidase D" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5I0D7 Pepd "Xaa-Pro dipeptidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9444 pepd "peptidase D" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0000455 Dip-C "Dipeptidase C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00019673 K12C11.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q11136PEPD_MOUSE3, ., 4, ., 1, 3, ., 90.5680.92920.7464yesno
Q5RFB3PEPD_PONAB3, ., 4, ., 1, 3, ., 90.57180.92670.7444yesno
P12955PEPD_HUMAN3, ., 4, ., 1, 3, ., 90.57440.92670.7444yesno
Q5I0D7PEPD_RAT3, ., 4, ., 1, 3, ., 90.56530.92920.7479yesno
P44881AMPP_HAEIN3, ., 4, ., 1, 1, ., 90.33070.87120.8023yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.13.90.914
3rd Layer3.4.130.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0112005001
hypothetical protein (489 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.162570001
Predicted protein (172 aa)
  •     0.477

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
cd01087243 cd01087, Prolidase, Prolidase 3e-91
PRK10879438 PRK10879, PRK10879, proline aminopeptidase P II; P 4e-54
COG0006384 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid 1e-52
pfam00557208 pfam00557, Peptidase_M24, Metallopeptidase family 3e-47
pfam05195134 pfam05195, AMP_N, Aminopeptidase P, N-terminal dom 1e-29
smart01011135 smart01011, AMP_N, Aminopeptidase P, N-terminal do 4e-29
PRK13607443 PRK13607, PRK13607, proline dipeptidase; Provision 7e-29
cd01092208 cd01092, APP-like, Similar to Prolidase and Aminop 4e-27
cd01066207 cd01066, APP_MetAP, A family including aminopeptid 2e-21
PRK09795361 PRK09795, PRK09795, aminopeptidase; Provisional 7e-15
cd01085224 cd01085, APP, X-Prolyl Aminopeptidase 2 2e-08
COG0024255 COG0024, Map, Methionine aminopeptidase [Translati 4e-06
PRK08671291 PRK08671, PRK08671, methionine aminopeptidase; Pro 2e-05
PRK14575406 PRK14575, PRK14575, putative peptidase; Provisiona 5e-05
PRK15173323 PRK15173, PRK15173, peptidase; Provisional 5e-05
TIGR00500247 TIGR00500, met_pdase_I, methionine aminopeptidase, 0.002
cd01086238 cd01086, MetAP1, Methionine Aminopeptidase 1 0.002
>gnl|CDD|238520 cd01087, Prolidase, Prolidase Back     alignment and domain information 
 Score =  274 bits (703), Expect = 3e-91
 Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 6/193 (3%)

Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
           + L++ A DIS+EAH   MK +R GM EY++E+ F +     G      Y+ I A G N+
Sbjct: 1   IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA--YSYIVAAGSNA 58

Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
           A+LHY H    ND+  +DGD+ L+D GAEY  Y SDIT +FPVNGKFT +Q  +Y AVL 
Sbjct: 59  AILHYVH----NDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114

Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
           A  A I A KPGV + D+H LA +++ E LK+ G++ G+VDE++ +   A F PHGLGH+
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174

Query: 373 LGIDTHDPGGYPK 385
           LG+D HD GGY +
Sbjct: 175 LGLDVHDVGGYLR 187

E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro. Length = 243
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional Back     alignment and domain information
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24 Back     alignment and domain information
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain Back     alignment and domain information
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain Back     alignment and domain information
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional Back     alignment and domain information
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional Back     alignment and domain information
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional Back     alignment and domain information
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I Back     alignment and domain information
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
KOG2737492 consensus Putative metallopeptidase [General funct 100.0
PRK10879438 proline aminopeptidase P II; Provisional 100.0
KOG2414488 consensus Putative Xaa-Pro aminopeptidase [Amino a 100.0
PRK13607443 proline dipeptidase; Provisional 100.0
COG0006384 PepP Xaa-Pro aminopeptidase [Amino acid transport 100.0
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 100.0
PRK09795361 aminopeptidase; Provisional 100.0
PRK14575406 putative peptidase; Provisional 100.0
PRK14576405 putative endopeptidase; Provisional 100.0
PRK15173323 peptidase; Provisional 100.0
PRK12897248 methionine aminopeptidase; Reviewed 100.0
PRK07281286 methionine aminopeptidase; Reviewed 100.0
cd01087243 Prolidase Prolidase. E.C. 3.4.13.9. Also known as 100.0
PRK12318291 methionine aminopeptidase; Provisional 100.0
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 100.0
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 100.0
PRK05716252 methionine aminopeptidase; Validated 100.0
PRK12896255 methionine aminopeptidase; Reviewed 100.0
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 100.0
PLN03158396 methionine aminopeptidase; Provisional 100.0
cd01091243 CDC68-like Related to aminopeptidase P and aminope 100.0
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 100.0
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 100.0
cd01085224 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also 100.0
cd01066207 APP_MetAP A family including aminopeptidase P, ami 100.0
PTZ00053 470 methionine aminopeptidase 2; Provisional 99.97
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 99.97
TIGR00501 295 met_pdase_II methionine aminopeptidase, type II. M 99.97
PRK08671 291 methionine aminopeptidase; Provisional 99.97
TIGR00495 389 crvDNA_42K 42K curved DNA binding protein. Protein 99.96
cd01088 291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 99.96
KOG1189 960 consensus Global transcriptional regulator, cell d 99.95
COG0024255 Map Methionine aminopeptidase [Translation, riboso 99.95
KOG2738369 consensus Putative methionine aminopeptidase [Post 99.92
KOG2413 606 consensus Xaa-Pro aminopeptidase [Amino acid trans 99.92
COG5406 1001 Nucleosome binding factor SPN, SPT16 subunit [Tran 99.91
PF05195134 AMP_N: Aminopeptidase P, N-terminal domain; InterP 99.83
KOG2776 398 consensus Metallopeptidase [General function predi 99.41
KOG2775 397 consensus Metallopeptidase [General function predi 99.32
PF01321132 Creatinase_N: Creatinase/Prolidase N-terminal doma 98.81
PF14826163 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-term 98.23
cd01066207 APP_MetAP A family including aminopeptidase P, ami 93.34
KOG2738 369 consensus Putative methionine aminopeptidase [Post 93.34
PRK05716252 methionine aminopeptidase; Validated 90.77
TIGR00500247 met_pdase_I methionine aminopeptidase, type I. Met 90.64
PRK08671291 methionine aminopeptidase; Provisional 90.24
cd01092208 APP-like Similar to Prolidase and Aminopeptidase P 89.83
PRK12897248 methionine aminopeptidase; Reviewed 88.92
COG0024 255 Map Methionine aminopeptidase [Translation, riboso 88.64
PLN03158 396 methionine aminopeptidase; Provisional 88.54
PRK12896255 methionine aminopeptidase; Reviewed 87.88
cd01091243 CDC68-like Related to aminopeptidase P and aminope 87.58
cd01088291 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 87.31
cd01086238 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 87.24
PRK12318291 methionine aminopeptidase; Provisional 86.77
PF00557207 Peptidase_M24: Metallopeptidase family M24 This Pr 86.55
TIGR00501295 met_pdase_II methionine aminopeptidase, type II. M 85.99
KOG2775 397 consensus Metallopeptidase [General function predi 85.44
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 85.22
cd01089228 PA2G4-like Related to aminopepdidase M, this famil 83.5
PTZ00053470 methionine aminopeptidase 2; Provisional 82.71
cd01090228 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. 82.07
PRK09795361 aminopeptidase; Provisional 81.18
PRK07281286 methionine aminopeptidase; Reviewed 80.66
>KOG2737 consensus Putative metallopeptidase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-68  Score=490.65  Aligned_cols=390  Identities=66%  Similarity=1.110  Sum_probs=355.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHhhhhhccC--CCCCCeEEEEeCCCceeeecCCCccccccCCCceeecCCCCCC
Q 016073            1 MASSSSLSPPKVPKELYFINREKVLNSLRQHLTET--SRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG   78 (396)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~d~~~~f~~~~n~~YLtG~~~~~   78 (396)
                      |++.++++.-.+|.+.|..+|+|+.++++......  +++..+++++.|+++.+++.+|..+.|||++.|+||+|.+.|+
T Consensus         1 ms~~~~~~~~~vP~~lf~~nr~rl~~~lr~k~~~~nr~~~~~s~vllqgGeE~nrYctD~~~lFrQesYF~~lfGV~ep~   80 (492)
T KOG2737|consen    1 MSALSGPSFWLVPMELFAGNRKRLLEALRKKLLSSNRSLDGGSFVLLQGGEEKNRYCTDTTELFRQESYFAYLFGVREPG   80 (492)
T ss_pred             CccccCCccceecHHHhhcchHHHHHHHHhhcccccccccCceEEEEecchhhcccccchHHHHhhhhHHHHhhcCCCcc
Confidence            67778888888999999999999999998754322  2434469999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCeEEEEecCCCCCcccccccCCChhHHHHHhCCccccchhhHHHHHHhcccCCCCCEEEEecCCCCCCcCC
Q 016073           79 FYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNF  158 (396)
Q Consensus        79 ~~lvi~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~g~~~~~~~~  158 (396)
                      ++.+|....|+.+||+|+++.+.+.|.|.+.+..++.+.+.+|++.+.|++..++...    +.+.++...+..+|++..
T Consensus        81 ~yg~idv~tgKstLFvPrlp~~ya~W~G~i~~l~~fke~y~VDev~yvde~~~~~~~~----~~k~l~~l~g~nTDsg~v  156 (492)
T KOG2737|consen   81 FYGAIDVGTGKSTLFVPRLPDSYATWMGEILSLQHFKEKYAVDEVFYVDEIIQVLKGS----KPKLLYLLRGLNTDSGNV  156 (492)
T ss_pred             ceEEEEecCCceEEEecCCChhhceeccccCCHHHHHHHhhhhheeehHhHHHHhhcc----CccceeeeeccccCcccc
Confidence            9999988889999999999999999999999999999999999999999998888554    567788888888888876


Q ss_pred             CchhhhhccccccccccChHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCC
Q 016073          159 SKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCR  238 (396)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~i~~~R~vKs~~Ei~~~r~Aa~i~~~~~~~~~~~i~~G~sE~ei~~~~~~~~~~~~g~~  238 (396)
                      +....|.....+..+..-+-+.+.+.|.|||+.||+.||.|++|+++++.++|++++||+.|.++++.++......+||+
T Consensus       157 ~~e~~f~g~~kf~~D~~~lyp~m~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcR  236 (492)
T KOG2737|consen  157 LKEASFAGISKFETDLTLLYPILAECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCR  236 (492)
T ss_pred             cCcccccchhhcccCchhhhHHHhhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCcc
Confidence            66666666655544555567899999999999999999999999999999999999999999999999999998889999


Q ss_pred             CCCCcceeeeCCCccccccCCCCCCCCCcccCCCEEEEEeCeeeCceeeeeeeeEeeCCCCCHHHHHHHHHHHHHHHHHH
Q 016073          239 HCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVI  318 (396)
Q Consensus       239 ~~~~~~iv~sG~~~~~~h~~~~~~p~~~~l~~Gd~v~iD~g~~~~gY~aD~tRT~~v~G~~~~~~~~~~~~~~~a~~~~~  318 (396)
                      ..+|.+|++||+|++++||.+.+.|+++.++.||+.++|+|+.|++|.||||++|+.+|++|++|+.+|++|++++.+++
T Consensus       237 h~sYtcIc~sG~ns~vLHYgha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm  316 (492)
T KOG2737|consen  237 HLSYTCICASGDNSAVLHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVM  316 (492)
T ss_pred             ccccceeeecCCCcceeeccccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHhCCCccCChHHHHHhhccccccccccccccCCcccCCCCCCCCCccccCCCC
Q 016073          319 NAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADG  395 (396)
Q Consensus       319 ~~~kpG~~~~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~h~~GHgiGl~~he~~~~~~g~~~~~~~~~  395 (396)
                      +++|||+.|.|+|..+.+++-+.|++.|++++++++|++++++..|+||++||.|||+|||++.+++|. ..+.+||
T Consensus       317 ~a~KpGv~W~Dmh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~-~rp~~P~  392 (492)
T KOG2737|consen  317 EAMKPGVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGV-ERPDEPG  392 (492)
T ss_pred             HhcCCCCccccHHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeeccccccccccccccccCCCCCCC-CCCCcch
Confidence            999999999999999999999999999999999999999999999999999999999999999999743 3444554

>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13607 proline dipeptidase; Provisional Back     alignment and domain information
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PRK14576 putative endopeptidase; Provisional Back     alignment and domain information
>PRK15173 peptidase; Provisional Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01087 Prolidase Prolidase Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>cd01085 APP X-Prolyl Aminopeptidase 2 Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>TIGR00495 crvDNA_42K 42K curved DNA binding protein Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2776 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>KOG2775 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3 Back     alignment and domain information
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A Back     alignment and domain information
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05716 methionine aminopeptidase; Validated Back     alignment and domain information
>TIGR00500 met_pdase_I methionine aminopeptidase, type I Back     alignment and domain information
>PRK08671 methionine aminopeptidase; Provisional Back     alignment and domain information
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P Back     alignment and domain information
>PRK12897 methionine aminopeptidase; Reviewed Back     alignment and domain information
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK12896 methionine aminopeptidase; Reviewed Back     alignment and domain information
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor Back     alignment and domain information
>cd01088 MetAP2 Methionine Aminopeptidase 2 Back     alignment and domain information
>cd01086 MetAP1 Methionine Aminopeptidase 1 Back     alignment and domain information
>PRK12318 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR00501 met_pdase_II methionine aminopeptidase, type II Back     alignment and domain information
>KOG2775 consensus Metallopeptidase [General function prediction only] Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 Back     alignment and domain information
>PTZ00053 methionine aminopeptidase 2; Provisional Back     alignment and domain information
>cd01090 Creatinase Creatine amidinohydrolase Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>PRK07281 methionine aminopeptidase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
2iw2_A494 Crystal Structure Of Human Prolidase Length = 494 1e-126
2v3z_A440 Glu383ala Escherichia Coli Aminopeptidase P In Comp 3e-42
1wl9_A440 Structure Of Aminopeptidase P From E. Coli Length = 3e-42
2bwy_A440 Glu383ala Escherichia Coli Aminopeptidase P Length 8e-42
1m35_A440 Aminopeptidase P From Escherichia Coli Length = 440 8e-42
1jaw_A440 Aminopeptidase P From E. Coli Low Ph Form Length = 1e-41
2bws_A440 His243ala Escherichia Coli Aminopeptidase P Length 3e-41
2bwv_A440 His361ala Escherichia Coli Aminopeptidase P Length 3e-41
2bwt_A440 Asp260ala Escherichia Coli Aminopeptidase P Length 7e-41
2bwu_A440 Asp271ala Escherichia Coli Aminopeptidase P Length 7e-41
2bww_A440 His350ala Escherichia Coli Aminopeptidase P Length 8e-41
2bwx_A441 His354ala Escherichia Coli Aminopeptidase P Length 3e-40
3ig4_A427 Structure Of A Putative Aminopeptidase P From Bacil 1e-33
3rva_A451 Crystal Structure Of Organophosphorus Acid Anhydrol 1e-20
3l24_A 517 Crystal Structure Of The Nerve Agent Degrading Orga 7e-19
1wy2_A351 Crystal Structure Of The Prolidase From Pyrococcus 1e-17
1pv9_A348 Prolidase From Pyrococcus Furiosus Length = 348 2e-16
2zsg_A359 Crystal Structure Of X-Pro Aminopeptidase From Ther 2e-13
1wn1_A356 Crystal Structure Of Dipeptiase From Pyrococcus Hor 1e-12
3q6d_A356 Xaa-Pro Dipeptidase From Bacillus Anthracis. Length 1e-11
4fkc_A377 Recombinant Prolidase From Thermococcus Sibiricus L 1e-08
4ege_A378 Crystal Structure Of Dipeptidase Pepe From Mycobact 5e-07
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase Length = 494 Back     alignment and structure 
Iteration: 1

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/376 (57%), Positives = 268/376 (71%), Gaps = 9/376 (2%)
Query: 11  KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
           KVP  L+ +NR+++   LR++    +  +   V+LQGGEE  RYCTD   LFRQES+F +
Sbjct: 18  KVPLALFALNRQRLCERLRKNPAVQAGSI---VVLQGGEETQRYCTDTGVLFRQESFFHW 74
Query: 71  LFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIV 130
            FGV EPG YG ID+ TGKS LF PRLP  +A W+GKI    +F+EKY V+ V Y DEI 
Sbjct: 75  AFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIA 134
Query: 131 GVLQGHYKEPGKP-LLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKS 189
            VL        KP +L  L G+NTDS +  + A F+G+ KFE     LHP + ECRVFK+
Sbjct: 135 SVLTSQ-----KPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKT 189
Query: 190 DHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATG 249
           D EL ++++ N ISSEAH EVMK  +VGMKEY++ES+F H+ Y  GG RH SYTCIC +G
Sbjct: 190 DMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSG 249
Query: 250 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 309
           ENSAVLHYGHA APNDRT ++GDM L DMG EY  + SDITCSFP NGKFT+DQ  +Y A
Sbjct: 250 ENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEA 309
Query: 310 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
           VL++  AV+ AMKPGV W DMH+LA++I LE L   G++ G+VD M+ A LGAVFMPHGL
Sbjct: 310 VLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGL 369
Query: 370 GHFLGIDTHDPGGYPK 385
           GHFLGID HD GGYP+
Sbjct: 370 GHFLGIDVHDVGGYPE 385
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex With Substrate Length = 440 Back     alignment and structure
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli Length = 440 Back     alignment and structure
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli Length = 440 Back     alignment and structure
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form Length = 440 Back     alignment and structure
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P Length = 440 Back     alignment and structure
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus Anthracis Length = 427 Back     alignment and structure
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase From Alteromonas Macleodii Length = 451 Back     alignment and structure
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH Inhibitors Length = 517 Back     alignment and structure
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus Horikoshii Ot3 Length = 351 Back     alignment and structure
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus Length = 348 Back     alignment and structure
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga Maritima Msb8 Length = 359 Back     alignment and structure
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii Ot3 Length = 356 Back     alignment and structure
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis. Length = 356 Back     alignment and structure
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus Length = 377 Back     alignment and structure
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium Ulcerans Length = 378 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 1e-175
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 1e-144
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 1e-141
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 1e-141
3l24_A 517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 1e-135
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 1e-39
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 2e-39
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 6e-39
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 4e-38
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 2e-37
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 4e-37
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 1e-36
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 3e-33
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 1e-30
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 1e-19
2nw5_A 360 Methionine aminopeptidase 2; metap2, structural ge 1e-09
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 2e-09
3ctz_A623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1xgs_A295 Methionine aminopeptidase; hyperthermophIle; 1.75A 1e-06
2q8k_A 401 Proliferation-associated protein 2G4; EBP1, PA2G4, 4e-05
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Length = 494 Back     alignment and structure
 Score =  496 bits (1279), Expect = e-175
 Identities = 214/377 (56%), Positives = 265/377 (70%), Gaps = 7/377 (1%)

Query: 9   PPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF 68
             KVP  L+ +NR+++   LR++    +      V+LQGGEE  RYCTD   LFRQES+F
Sbjct: 16  TLKVPLALFALNRQRLCERLRKNPAVQA---GSIVVLQGGEETQRYCTDTGVLFRQESFF 72

Query: 69  AYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDE 128
            + FGV EPG YG ID+ TGKS LF PRLP  +A W+GKI    +F+EKY V+ V Y DE
Sbjct: 73  HWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDE 132

Query: 129 IVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFK 188
           I  VL          +L  L G+NTDS +  + A F+G+ KFE     LHP + ECRVFK
Sbjct: 133 IASVL----TSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFK 188

Query: 189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
           +D EL ++++ N ISSEAH EVMK  +VGMKEY++ES+F H+ Y  GG RH SYTCIC +
Sbjct: 189 TDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGS 248

Query: 249 GENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN 308
           GENSAVLHYGHA APNDRT ++GDM L DMG EY  + SDITCSFP NGKFT+DQ  +Y 
Sbjct: 249 GENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYE 308

Query: 309 AVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHG 368
           AVL++  AV+ AMKPGV W DMH+LA++I LE L   G++ G+VD M+ A LGAVFMPHG
Sbjct: 309 AVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHG 368

Query: 369 LGHFLGIDTHDPGGYPK 385
           LGHFLGID HD GGYP+
Sbjct: 369 LGHFLGIDVHDVGGYPE 385
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Length = 451 Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Length = 440 Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Length = 517 Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Length = 356 Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Length = 351 Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Length = 378 Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Length = 356 Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Length = 623 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Length = 295 Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Length = 401 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 100.0
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 100.0
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 100.0
3rva_A451 Organophosphorus acid anhydrolase; PITA-bread fold 100.0
3l24_A 517 XAA-Pro dipeptidase; PITA-bread, detoxification, h 100.0
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 100.0
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 100.0
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 100.0
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 100.0
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 100.0
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 100.0
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 100.0
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 100.0
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 100.0
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 100.0
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 100.0
3ctz_A 623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 100.0
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 100.0
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 100.0
3mx6_A262 Methionine aminopeptidase; seattle structural geno 100.0
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 100.0
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 100.0
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 100.0
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 100.0
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 100.0
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 100.0
4fuk_A337 Methionine aminopeptidase; structural genomics con 100.0
2q8k_A 401 Proliferation-associated protein 2G4; EBP1, PA2G4, 100.0
2nw5_A 360 Methionine aminopeptidase 2; metap2, structural ge 100.0
1xgs_A 295 Methionine aminopeptidase; hyperthermophIle; 1.75A 100.0
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 100.0
3fm3_A 358 Methionine aminopeptidase 2; metap2, structural ge 99.96
4b6a_t 614 Probable metalloprotease ARX1; large ribosomal sub 99.46
3il0_A131 Aminopeptidase P; XAA-Pro aminopeptidase; structur 98.91
3pn9_A138 Proline dipeptidase; structural genomics, PSI-2, p 98.9
3i7m_A140 XAA-Pro dipeptidase; structural genomics, APC64794 98.75
3qoc_A135 Putative metallopeptidase; MCSG, PSI-2, structural 98.72
3o5v_A132 X-Pro dipeptidase; creatinase, N-terminal, PSI, MC 98.68
3ooo_A132 Proline dipeptidase; structural genomics, PSI-2, p 98.67
3ovk_A132 Aminopeptidase P, XAA-Pro dipeptidase; structural 98.51
3ctz_A 623 XAA-Pro aminopeptidase 1; PITA-bread fold, alterna 98.19
3mx6_A262 Methionine aminopeptidase; seattle structural geno 86.59
1o0x_A262 Methionine aminopeptidase; TM1478, structural geno 86.27
2gg2_A263 Methionine aminopeptidase; PITA-bread fold, MAP in 85.09
3tb5_A264 Methionine aminopeptidase; hydrolase, metalloprote 85.01
2b3h_A329 Methionine aminopeptidase 1; hydrolase, metallopro 83.96
1qxy_A252 Methionyl aminopeptidase; PITA bread fold, hydrola 83.22
3pka_A285 Methionine aminopeptidase; hydrolase-hydrolase inh 82.71
3s6b_A368 Methionine aminopeptidase; malaria, proteolysis, " 81.92
3tav_A286 Methionine aminopeptidase; ssgcid, seattle structu 81.06
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 80.92
3fm3_A 358 Methionine aminopeptidase 2; metap2, structural ge 80.11
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Back     alignment and structure
Probab=100.00  E-value=1.7e-68  Score=539.05  Aligned_cols=385  Identities=56%  Similarity=0.957  Sum_probs=332.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhhhhhccCCCCCCeEEEEeCCCceeeecCCCccccccCCCceeecCCCCCCEEEEE
Q 016073            4 SSSLSPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI   83 (396)
Q Consensus         4 ~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~f~~~~n~~YLtG~~~~~~~lvi   83 (396)
                      ++|+.+++|+.++|++||++|+++|++...+.   ..+++|+.|+++..++++|..|+|||++||+|||||+.|+++++|
T Consensus        11 ~~g~~~~~i~~~e~~~Rr~~l~~~~~~~~~~~---~~~~~il~~~~~~~~~~~d~~y~frq~s~f~YLtG~~~p~~~~vi   87 (494)
T 2iw2_A           11 WLGNETLKVPLALFALNRQRLCERLRKNPAVQ---AGSIVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVI   87 (494)
T ss_dssp             CCSTTCCCEETHHHHHHHHHHHHHHHHCTTCC---TTCEEEEECCCCEESTTSCCEECCCCCHHHHHHHCCCSSSCEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhhhccc---CceEEEEeCCcceeecCCCCCCCccCCcceeeecCCCCCCeEEEE
Confidence            47889999999999999999999998742211   136889999999999899999999999999999999999998888


Q ss_pred             EecCCeEEEEecCCCCCcccccccCCChhHHHHHhCCccccchhhHHHHHHhcccCCCCCEEEEecCCCCCCcCCCchhh
Q 016073           84 DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQ  163 (396)
Q Consensus        84 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~  163 (396)
                      .+.+++++||+++++...+.|.+.+.+++.|...++++.+.+.+.+.+.|.+.    +..++++..+.+.+...+.....
T Consensus        88 ~~~~~~~~L~~~~~~~~~~~w~g~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~i~~~~g~~~~~~~~~~~~~  163 (494)
T 2iw2_A           88 DVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIASVLTSQ----KPSVLLTLRGVNTDSGSVCREAS  163 (494)
T ss_dssp             ETTTCCEEEEECCCCGGGTTTTCCCCCHHHHHHHHTCSEEEEGGGHHHHHHHT----CCSCEECCCCBCTTTCCBCCCCC
T ss_pred             EccCCeEEEEECCCCHHHhhhcCCCCCHHHHHHHhCCcccccHHHHHHHHHhc----CCCeEEEecCccccccccccHhh
Confidence            77778999999998888888999888999998888888888888999999876    34567765565544332222222


Q ss_pred             hhccccccccccChHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCCCCCc
Q 016073          164 FEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYT  243 (396)
Q Consensus       164 ~~~l~~~~~~~~~~~~~i~~~R~vKs~~Ei~~~r~Aa~i~~~~~~~~~~~i~~G~sE~ei~~~~~~~~~~~~g~~~~~~~  243 (396)
                      +..+.....+..++.+.+..+|+|||++||+.||+|++++.+++..+++.++||+||.||++.+...+++++|+...+|+
T Consensus       164 ~~~l~~~~~~~~~~~~~l~~~R~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~~G~tE~el~~~~~~~~~~~~G~~~~~~~  243 (494)
T 2iw2_A          164 FDGISKFEVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYT  243 (494)
T ss_dssp             CTTGGGSCEECSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHHHCCCEESSC
T ss_pred             hhhhhhccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhCCCCcCCCC
Confidence            22232222466788999999999999999999999999999999999999999999999999998888765577788999


Q ss_pred             ceeeeCCCccccccCCCCCCCCCcccCCCEEEEEeCeeeCceeeeeeeeEeeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 016073          244 CICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKP  323 (396)
Q Consensus       244 ~iv~sG~~~~~~h~~~~~~p~~~~l~~Gd~v~iD~g~~~~gY~aD~tRT~~v~G~~~~~~~~~~~~~~~a~~~~~~~~kp  323 (396)
                      +||++|.|++++||.+.+.|++++|++||+|++|+|+.|+|||+|+||||+|+|+|+++|+++|++++++|+++++++||
T Consensus       244 ~iv~sG~n~~~~Hy~~~g~p~~~~l~~Gd~vliD~G~~~~gY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kp  323 (494)
T 2iw2_A          244 CICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKP  323 (494)
T ss_dssp             CEEEEGGGGGCSSCSSTTSCSCCBCCTTCEEEEEECEEBTTBCCCEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ceEEEcCccccccccccCCCCCCccCCCCEEEEEeeEEECCEEEEeeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999763367799999999999999999999999999999998899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCccCChHHHHHhhccccccccccccccCCcccCCCCCCC-------------CCccc
Q 016073          324 GVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPK-------------VYMIK  390 (396)
Q Consensus       324 G~~~~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~h~~GHgiGl~~he~~~~~~-------------g~~~~  390 (396)
                      |+++.||++++++++.+.|.++|++++.++++++.|++..||+|++||+|||++||.|.+..             +..++
T Consensus       324 G~~~~di~~~a~~~i~~~l~~~G~~~g~~~~~~~~g~~~~~~~H~~GHgiGl~vHd~~~~~~~~~~~~~p~~~~~~~~~~  403 (494)
T 2iw2_A          324 GVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARH  403 (494)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHTTSBCSCHHHHHHTTTHHHHCCSCSCCBCSSSSSCSCSSCTTCCCCCSTTGGGCSCCCB
T ss_pred             CCcHHHHHHHHHHHHHHHHHHcCCccccHHHHHhcccccccCCCCCcCCCCcccccCCCcccccccccccccccCCCCCE
Confidence            99999999999999999999999999999999999998779999999999999999765532             34567


Q ss_pred             cCCCC
Q 016073          391 LTADG  395 (396)
Q Consensus       391 ~~~~~  395 (396)
                      |++.|
T Consensus       404 L~~GM  408 (494)
T 2iw2_A          404 LQPGM  408 (494)
T ss_dssp             CCTTC
T ss_pred             eCCCC
Confidence            77655
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Back     alignment and structure
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>4fuk_A Methionine aminopeptidase; structural genomics consortium, SGC, hydrolase; 1.75A {Trypanosoma brucei brucei} Back     alignment and structure
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A Back     alignment and structure
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus} Back     alignment and structure
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis} Back     alignment and structure
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae} Back     alignment and structure
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A* Back     alignment and structure
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes} Back     alignment and structure
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Back     alignment and structure
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A Back     alignment and structure
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Back     alignment and structure
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ... Back     alignment and structure
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis} Back     alignment and structure
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab; HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A 2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A* Back     alignment and structure
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A* Back     alignment and structure
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex; HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB: 3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A* 1y1n_A 1yj3_A 3ror_A Back     alignment and structure
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold, structur genomics, structural genomics consortium, SGC, hydrolase; 1.95A {Plasmodium falciparum} Back     alignment and structure
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus} Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d2v3za2264 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal 2e-24
d2gg2a1262 d.127.1.1 (A:3-264) Methionine aminopeptidase {Esc 4e-22
d1o0xa_249 d.127.1.1 (A:) Methionine aminopeptidase {Thermoto 3e-17
d2v3za1176 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia c 3e-17
d1pv9a2221 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal 1e-15
d1qxya_249 d.127.1.1 (A:) Methionine aminopeptidase {Staphylo 2e-15
d1chma2246 d.127.1.1 (A:157-402) Creatinase, catalytic (C-ter 2e-12
d1xgsa2218 d.127.1.1 (A:1-194,A:272-295) Methionine aminopept 1e-09
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Aminopeptidase P, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 99.0 bits (245), Expect = 2e-24
 Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 5/203 (2%)

Query: 189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
           S  E+A+++ A +I++ AH   M+K R GM EY +E   +HH +   G R+ SY  I  +
Sbjct: 1   SPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEG-EIHHEFNRHGARYPSYNTIVGS 59

Query: 249 GENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN 308
           GEN  +LHY      N+    DGD+ L+D G EY+ Y  DIT +FPVNGKFT  Q  IY+
Sbjct: 60  GENGCILHYTE----NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 115

Query: 309 AVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHG 368
            VL++    +   +PG   +++     +I++  L K G++ G+VDE++A      F  HG
Sbjct: 116 IVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHG 175

Query: 369 LGHFLGIDTHDPGGYPKVYMIKL 391
           L H+LG+D HD G Y +     L
Sbjct: 176 LSHWLGLDVHDVGVYGQDRSRIL 198
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Length = 262 Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Length = 249 Back     information, alignment and structure
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} Length = 176 Back     information, alignment and structure
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 221 Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Length = 249 Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Length = 246 Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 100.0
d2v3za2264 Aminopeptidase P, C-terminal domain {Escherichia c 100.0
d1o0xa_249 Methionine aminopeptidase {Thermotoga maritima [Ta 100.0
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 100.0
d1qxya_249 Methionine aminopeptidase {Staphylococcus aureus [ 100.0
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 100.0
d1xgsa2218 Methionine aminopeptidase {Archaeon Pyrococcus fur 100.0
d1b6aa2295 Methionine aminopeptidase {Human (Homo sapiens) [T 99.96
d2v3za1176 Aminopeptidase P {Escherichia coli [TaxId: 562]} 99.87
d1kp0a1156 Creatinase {Actinobacillus sp. [TaxId: 41114]} 99.07
d1chma1155 Creatinase {Pseudomonas putida [TaxId: 303]} 99.04
d1pv9a1117 Aminopeptidase P {Archaeon Pyrococcus furiosus [Ta 98.55
d1pv9a2221 Aminopeptidase P, C-terminal domain {Archaeon Pyro 90.48
d2gg2a1262 Methionine aminopeptidase {Escherichia coli [TaxId 89.51
d1chma2246 Creatinase, catalytic (C-terminal) domain {Pseudom 84.32
d1b6aa2 295 Methionine aminopeptidase {Human (Homo sapiens) [T 83.42
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Creatinase/aminopeptidase
superfamily: Creatinase/aminopeptidase
family: Creatinase/aminopeptidase
domain: Aminopeptidase P, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.2e-39  Score=293.75  Aligned_cols=184  Identities=29%  Similarity=0.443  Sum_probs=173.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCCCCCCcceeeeCCCccccccCCCCCCCCCc
Q 016073          188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRT  267 (396)
Q Consensus       188 Ks~~Ei~~~r~Aa~i~~~~~~~~~~~i~~G~sE~ei~~~~~~~~~~~~g~~~~~~~~iv~sG~~~~~~h~~~~~~p~~~~  267 (396)
                      ||++||++||+|++++++++..+++.++||+||.||.+.+...+.+. |+...+|++++++|.|++.+|+.+    ++++
T Consensus         1 Ks~~EI~~mr~a~~i~~~~~~~~~~~i~~G~tE~ei~~~~~~~~~~~-G~~~~~~~~~v~~g~~~~~~h~~~----~~~~   75 (221)
T d1pv9a2           1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMN-GAEKPAFDTIIASGHRSALPHGVA----SDKR   75 (221)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHT-TCSEESSCCEEEEGGGGGSTTCBC----CSCB
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc-cccccccccccccccccccccccc----cccc
Confidence            99999999999999999999999999999999999999999888875 777788899999999999999765    8999


Q ss_pred             ccCCCEEEEEeCeeeCceeeeeeeeEeeCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 016073          268 FEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGV  347 (396)
Q Consensus       268 l~~Gd~v~iD~g~~~~gY~aD~tRT~~v~G~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~l~~~g~  347 (396)
                      +++||+|++|+|+.|+||++|++||+++ |+|+++++++|+.++++++++++++|||++++||++++++.+++       
T Consensus        76 i~~gd~v~id~~~~~~gy~~d~~Rt~~v-G~~~~~~~~~~~~~~~~~~~~~~~~kpG~~~~~v~~~~~~~~~~-------  147 (221)
T d1pv9a2          76 IERGDLVVIDLGALYNHYNSDITRTIVV-GSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKE-------  147 (221)
T ss_dssp             CCTTCEEEEEECEEETTEECCEEEEEES-SSCCHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHH-------
T ss_pred             ccccceEEEecccccCccccCcceeeec-CCccHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHhhhhh-------
Confidence            9999999999999999999999999999 99999999999999999999999999999999999999999886       


Q ss_pred             ccCChHHHHHhhccccccccccccccCCcccCCCCCCCCCccccCCCC
Q 016073          348 MVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTADG  395 (396)
Q Consensus       348 ~~~~~~~~~~~g~~~~~~~h~~GHgiGl~~he~~~~~~g~~~~~~~~~  395 (396)
                                .|+.. ++.|++||++|+++||.|.+..+++.+|+++|
T Consensus       148 ----------~g~~~-~~~~~~Ghg~g~~~~e~~~~~~~~~~~L~~gM  184 (221)
T d1pv9a2         148 ----------YGYGD-YFIHSLGHGVGLEIHEWPRISQYDETVLKEGM  184 (221)
T ss_dssp             ----------TTCGG-GCCSCSEEECSSSSSEEEEESTTCCCBCCTTC
T ss_pred             ----------cccCC-ceeccccCCCCcccchhcccccCCCceeCCCc
Confidence                      56664 78999999999999999999999999999876
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]} Back     information, alignment and structure
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure