Citrus Sinensis ID: 016074

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
MKMMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDSLDDDDSSCSSSKDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMVLH
Secondary Structure (PSIPRED)
cHHHcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccEEEccccEEEEEEcccEEcccccEEEEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHEHHEccccccccccEEccccccccEEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHEEEEcccccccccccEEEEEccccccHHHEcHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcc
Coil and Loop (DISEMBL)
MKMMLMRRRLACctrdrglsldfdeqqdrimtydgLESCilnnqsydnesrtsrgdgcltdslddddsscssskdafgsfsskwstmkrvehgsedwgpsespnhyhlkqkpayafrFLDVETMKERFSKLllgeditggrlGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVparqnaangqtleimtpkaradiHMNLPALQKLDSMLIETLDSMVNTEFWYAEvgsraegrnkstreskrwwlplaqvpasglsdsgrkkMLSQCRVVYQVFKAAKSINenvllempvptiikdvlpksgktslgEELYKVLTAesissgeminflnlkSEHSALEAINKLEAAVFTWKERiseqasgkspcpnimvlh
Flexible Loop (DISEMBL)
MKMMLMRRRLACctrdrglsldfdeQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDSLDDDDSSCSSSKDafgsfsskwstMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSKLllgeditggRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAevgsraegrnkstreskrwwlplaqvpasglsdsgrKKMLSQCRVVYQVFKAAKSinenvllempvpTIIKdvlpksgktslGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKEriseqasgkspcpnimvlh
Low Complexity Region (SEG)
MKMMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGdgcltdslddddsscssskdafgsfsskWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMVLH
Disordered region (IsUnstruct)
*******RRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILN*****************************************************************LKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVG**************RWWLPLAQVP**********KMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKE*******************
Disordered Region (DISOPRED)
***********CCTRDR**********DRIMTYDGLESCI******************************************************************************************************GVTTALALSNAITNLAASVFGELWKLEPLLEE**SRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYA******************WWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTW******************VL*
Disordered Region (DISEMBL)
MKMMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSY********GDGCLTDS****************SFSSKWSTMK************ESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVG************SKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKER********SPCPNIMVLH
Disordered Region (DISPRO)
*KMMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQ********************************************************************AYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVG*************KRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISE***************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDSLDDDDSSCSSSKDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMVLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
Q93ZY2	548	Rop guanine nucleotide ex	no	no	0.651	0.470	0.501	2e-70
Q9LV40	523	Rho guanine nucleotide ex	no	no	0.656	0.497	0.475	3e-67
Q9LQ89	485	Rop guanine nucleotide ex	no	no	0.787	0.643	0.410	5e-66

>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 185/267 (69%), Gaps = 9/267 (3%)

Query: 120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
           ++E MKERF+KLLLGED++GG  GV TALA+SNAITNL+A+VFGELW+LEPL  ++K+ W
Sbjct: 90  EIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 149

Query: 180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
           +RE++WLL  ++ +VEL+P+ Q    G T EIM  + R+D++ NLPAL+KLD+MLI+ LD
Sbjct: 150 RRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLD 209

Query: 240 SMVNTEFWYAEVGSRAEGRNK-------STRESKRWWLPLAQVPASGLSDSGRKKMLSQC 292
           +  +TEFWY + G      +K       S R+  +WWLP  +VP +GLS+  RKK L QC
Sbjct: 210 AFSDTEFWYTDRGIVLGDCDKDSYNSPASVRQEDKWWLPCPKVPPNGLSEEARKK-LQQC 268

Query: 293 R-VVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMIN 351
           R    Q+ KAA +IN  VL EM +P    + LPKSGK  LGE +Y+ LTA   S   +++
Sbjct: 269 RDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLD 328

Query: 352 FLNLKSEHSALEAINKLEAAVFTWKER 378
            L+L SEH  LE  N++EAAV  W+++
Sbjct: 329 CLDLSSEHQTLEIANRIEAAVHVWRQK 355

Acts as an activator of Rop GTPases by exchanging GDP with GTP. Stimulates Rop1 to control polarized pollen tube growth.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1

 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 182/261 (69%), Gaps = 1/261 (0%)

Query: 120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
           D+E MK+RF+KLLLGED++GG  GV++ALALSNAITNLAAS+FGE  KL+P+ ++R++RW
Sbjct: 85  DMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARW 144

Query: 180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
           ++E+DWLLS T+ +VE VP++Q + +G   EIM  + R D+ MN+PAL+KLD+MLI+TLD
Sbjct: 145 KKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLD 204

Query: 240 SMV-NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
           +   + EFWY    S    + ++ R + +WWLP  +VP  GLS+  R+ +  Q   V QV
Sbjct: 205 NFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQV 264

Query: 299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
            KAA +IN  VL EM +P    D LPK+G+ SLG+ +YK +T E     + +  L++ +E
Sbjct: 265 QKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLDMSTE 324

Query: 359 HSALEAINKLEAAVFTWKERI 379
           H  L+  N++EA+V  WK ++
Sbjct: 325 HKVLDLKNRIEASVVIWKRKL 345

Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop GTPases by exchanging GDP with GTP. Active as homodimer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2

 Score =  251 bits (642), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/341 (41%), Positives = 205/341 (60%), Gaps = 29/341 (8%)

Query: 57  GCLTDSLDDDDSSCSSSKDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAF 116
           G  +D +D+  S C+ +        S W  +      S +   S  P  + LK       
Sbjct: 55  GGFSDQIDETSSFCTEAS------PSDWPVLTE----SNNSASSNFPTVFDLKHNQIETD 104

Query: 117 RFLDV--------ETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKL 168
             L V        ETMKERFSKLLLGED++G   GV TA+ +SNAITNL A+VFG+  +L
Sbjct: 105 EHLAVQEISEPELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL 164

Query: 169 EPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQ 228
           EPL  E+K+ W+REM+ LLS  +++ E +P  QN +NG T+E+M  + RADI++NLPAL+
Sbjct: 165 EPLEIEQKTTWKREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALR 224

Query: 229 KLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKST----------RESKRWWLPLAQVPAS 278
           KLDSML+E LDS   TEFWYAE GS +    +S           R+ ++WWLP+  VP  
Sbjct: 225 KLDSMLMEALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQ 284

Query: 279 GLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKV 338
           GLS+  RK++ S+     Q+ KAA +IN ++L EM +P      LPKSGK S G+ +Y+ 
Sbjct: 285 GLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRH 344

Query: 339 LTAES-ISSGEMINFLNLKSEHSALEAINKLEAAVFTWKER 378
           +T+    S  ++++ L + SEH AL+  +++EA+++TW+ +
Sbjct: 345 MTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK 385

Acts as an activator of Rop GTPases by exchanging GDP with GTP.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
296085482	912	unnamed protein product [Vitis vinifera]	0.972	0.422	0.778	1e-177
359474736	570	PREDICTED: rop guanine nucleotide exchan	0.972	0.675	0.778	1e-177
224139166	568	predicted protein [Populus trichocarpa]	0.972	0.677	0.764	1e-176
224074619	543	predicted protein [Populus trichocarpa]	0.906	0.661	0.75	1e-157
147834541	1036	hypothetical protein VITISV_021238 [Viti	0.954	0.364	0.733	1e-156
356531541	563	PREDICTED: rop guanine nucleotide exchan	0.969	0.682	0.725	1e-153
356496475	563	PREDICTED: rop guanine nucleotide exchan	0.969	0.682	0.720	1e-153
255557785	526	Rop guanine nucleotide exchange factor,	0.904	0.680	0.763	1e-153
357484469	558	Rop guanine nucleotide exchange factor [	0.972	0.689	0.715	1e-151
30692580	576	RHO guanyl-nucleotide exchange factor 14	0.974	0.670	0.686	1e-150

>gi|296085482|emb|CBI29214.3| unnamed protein product [Vitis vinifera]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/388 (77%), Positives = 344/388 (88%), Gaps = 3/388 (0%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDS 62
           MM+MRRRLACCTR+R LSLD DEQ+ RIMTY+GLE+CILN  SY+NES TSRGDGC TDS
Sbjct: 1   MMVMRRRLACCTRERELSLDLDEQE-RIMTYNGLENCILNGHSYENESHTSRGDGCATDS 59

Query: 63  LDDDDSSCSSSKDAFGSFSSKWSTM--KRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLD 120
           LD+DD+SCSSSKDAFGSFSSKW TM  K+ EHG ++W   ESP H+++K+KP Y+ RF D
Sbjct: 60  LDEDDTSCSSSKDAFGSFSSKWLTMNMKKDEHGLDEWEVPESPQHFYVKEKPGYSVRFSD 119

Query: 121 VETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQ 180
           VE MKERFSKLLLGEDITGG+ G+T+ALALSNAITNLA SVFGELWKLEPL EERK +WQ
Sbjct: 120 VEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKVKWQ 179

Query: 181 REMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDS 240
           REMDWLLSPTN+MVELVPA+Q+ ANG+TLEIMTPKARADIHMNLPALQKLDSMLIETLDS
Sbjct: 180 REMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDS 239

Query: 241 MVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFK 300
           MV+TEFWYAE GSRAEGR +S  +SKRWWLP  QVP +GLSD  RKK+L Q +VV+QVFK
Sbjct: 240 MVDTEFWYAEGGSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKKLLHQAKVVHQVFK 299

Query: 301 AAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHS 360
           AA++INENVLLEMPVPT+I+D L KSGK +LGEELY+VLTAES S+ EM++ LNLKSEHS
Sbjct: 300 AARAINENVLLEMPVPTLIRDALAKSGKANLGEELYRVLTAESSSAEEMLSSLNLKSEHS 359

Query: 361 ALEAINKLEAAVFTWKERISEQASGKSP 388
           ALEAIN+LEAAVF WKERI+EQ SGKSP
Sbjct: 360 ALEAINRLEAAVFAWKERITEQVSGKSP 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474736|ref|XP_002273482.2| PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/388 (77%), Positives = 344/388 (88%), Gaps = 3/388 (0%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDS 62
           MM+MRRRLACCTR+R LSLD DEQ+ RIMTY+GLE+CILN  SY+NES TSRGDGC TDS
Sbjct: 2   MMVMRRRLACCTRERELSLDLDEQE-RIMTYNGLENCILNGHSYENESHTSRGDGCATDS 60

Query: 63  LDDDDSSCSSSKDAFGSFSSKWSTM--KRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLD 120
           LD+DD+SCSSSKDAFGSFSSKW TM  K+ EHG ++W   ESP H+++K+KP Y+ RF D
Sbjct: 61  LDEDDTSCSSSKDAFGSFSSKWLTMNMKKDEHGLDEWEVPESPQHFYVKEKPGYSVRFSD 120

Query: 121 VETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQ 180
           VE MKERFSKLLLGEDITGG+ G+T+ALALSNAITNLA SVFGELWKLEPL EERK +WQ
Sbjct: 121 VEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKVKWQ 180

Query: 181 REMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDS 240
           REMDWLLSPTN+MVELVPA+Q+ ANG+TLEIMTPKARADIHMNLPALQKLDSMLIETLDS
Sbjct: 181 REMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDS 240

Query: 241 MVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFK 300
           MV+TEFWYAE GSRAEGR +S  +SKRWWLP  QVP +GLSD  RKK+L Q +VV+QVFK
Sbjct: 241 MVDTEFWYAEGGSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKKLLHQAKVVHQVFK 300

Query: 301 AAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHS 360
           AA++INENVLLEMPVPT+I+D L KSGK +LGEELY+VLTAES S+ EM++ LNLKSEHS
Sbjct: 301 AARAINENVLLEMPVPTLIRDALAKSGKANLGEELYRVLTAESSSAEEMLSSLNLKSEHS 360

Query: 361 ALEAINKLEAAVFTWKERISEQASGKSP 388
           ALEAIN+LEAAVF WKERI+EQ SGKSP
Sbjct: 361 ALEAINRLEAAVFAWKERITEQVSGKSP 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139166|ref|XP_002326784.1| predicted protein [Populus trichocarpa] gi|222834106|gb|EEE72583.1| predicted protein [Populus trichocarpa]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/387 (76%), Positives = 348/387 (89%), Gaps = 2/387 (0%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDS 62
           MM++RRRLACCTRDR +SLDFD +Q+RIMTY+GLESCI+NNQSY+NES TSRG+GC++DS
Sbjct: 1   MMILRRRLACCTRDREISLDFD-KQERIMTYNGLESCIINNQSYENESGTSRGEGCVSDS 59

Query: 63  LDDDDSSCSSS-KDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDV 121
            DDD  S  SS KDAFGSFSSKW TMK+ EHG  DW  + SP H++ K+KP Y+ ++ DV
Sbjct: 60  FDDDGCSSCSSSKDAFGSFSSKWLTMKKDEHGLNDWELARSPQHFYDKEKPCYSIQYSDV 119

Query: 122 ETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQR 181
           ETMKE+F+KLLLGEDITGG+ G++TALALSNAITNLAA+VFGELWKLEPL EERK++WQR
Sbjct: 120 ETMKEKFAKLLLGEDITGGQSGLSTALALSNAITNLAATVFGELWKLEPLPEERKTKWQR 179

Query: 182 EMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSM 241
           EMDWLLSPTN+MVELVPA+QN ANG+ LEIMTPKARADIH+NLPALQKLDSMLI+TLD+M
Sbjct: 180 EMDWLLSPTNYMVELVPAKQNCANGRMLEIMTPKARADIHVNLPALQKLDSMLIDTLDAM 239

Query: 242 VNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKA 301
           VNTEFWY+EVGSRAEGR KS ++SKRWWLPL QVP +GLSDSGRKK+L+Q +VVYQVFKA
Sbjct: 240 VNTEFWYSEVGSRAEGRTKSAKQSKRWWLPLPQVPTTGLSDSGRKKLLNQSKVVYQVFKA 299

Query: 302 AKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSA 361
           AKS+NE VLLEMPVPTIIKD LPKSGK +LGEELYKVLTA+S ++ EM+N L+LKSEHSA
Sbjct: 300 AKSVNETVLLEMPVPTIIKDALPKSGKANLGEELYKVLTADSNTAEEMLNSLDLKSEHSA 359

Query: 362 LEAINKLEAAVFTWKERISEQASGKSP 388
           LEA+NKLEAA+F WKER++ Q SG+SP
Sbjct: 360 LEAVNKLEAAIFAWKERVTAQVSGRSP 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074619|ref|XP_002304399.1| predicted protein [Populus trichocarpa] gi|222841831|gb|EEE79378.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/360 (75%), Positives = 315/360 (87%), Gaps = 1/360 (0%)

Query: 30  IMTYDGLESCILNNQSYDNESRTSRGDGCLTDSLDDDDSSCSSS-KDAFGSFSSKWSTMK 88
           IMTY+GLESCI+NNQSY+NES TSRG+GCL++S DDD  S  SS KDAFGSFSSKW   K
Sbjct: 1   IMTYNGLESCIINNQSYENESGTSRGEGCLSESFDDDGCSSCSSSKDAFGSFSSKWLRTK 60

Query: 89  RVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTAL 148
           R EHG +DW  +  P H++ K+KP Y+ ++ DVETMKE+F+KLLLGED TGGR G++ AL
Sbjct: 61  RDEHGLDDWEVAGGPRHFYAKEKPCYSLQYSDVETMKEKFAKLLLGEDFTGGRNGLSPAL 120

Query: 149 ALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQT 208
           ALSNAITNLAA+VFGELWKL+PL EERK++W+REMDWLLSPTN+MVELVPA+QN ANG+ 
Sbjct: 121 ALSNAITNLAATVFGELWKLQPLPEERKTKWRREMDWLLSPTNYMVELVPAKQNCANGRA 180

Query: 209 LEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRW 268
           LEIMTPKARADIH+NLPALQKLDSMLI+TLDSMVNTEFWY+EVGSRAEGR KS +ESKRW
Sbjct: 181 LEIMTPKARADIHVNLPALQKLDSMLIDTLDSMVNTEFWYSEVGSRAEGRTKSAKESKRW 240

Query: 269 WLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGK 328
           WLPL QVP +GLSDSGR K+L+Q +VVYQVFKAAKSINE +LLEMPVPTIIKD LPKSGK
Sbjct: 241 WLPLPQVPTNGLSDSGRTKLLNQSKVVYQVFKAAKSINETILLEMPVPTIIKDALPKSGK 300

Query: 329 TSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSP 388
            +LGEELYK+LTAES ++ EM++ LNL+SEHSALEAINKLEAA F WK+R++ Q   KSP
Sbjct: 301 ANLGEELYKLLTAESNTAEEMLDSLNLQSEHSALEAINKLEAAAFAWKDRMTAQVGVKSP 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834541|emb|CAN76404.1| hypothetical protein VITISV_021238 [Vitis vinifera]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 294/401 (73%), Positives = 335/401 (83%), Gaps = 23/401 (5%)

Query: 10  LACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDSLDDDDSS 69
           LACCT +R LSLD D+Q+ RIMTY+GLE+CILN  SY+NES TSRGDGC TDSLD+DDSS
Sbjct: 89  LACCTWERELSLDLDDQE-RIMTYNGLENCILNGHSYENESHTSRGDGCATDSLDEDDSS 147

Query: 70  CSSSKDAFGSFSSKWSTM--KRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKER 127
           CSSSKDAFGSFSSKW TM  K+ EHG ++W   ESP H+++K+KP Y+FRF DVE MKER
Sbjct: 148 CSSSKDAFGSFSSKWLTMNMKKDEHGLDEWEVPESPQHFYVKEKPGYSFRFSDVEVMKER 207

Query: 128 FSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLL 187
           FSKLLLGED TGG+ G+T+ALALSNAITNLA SVFGELWKLEPL EERK +WQREMDWLL
Sbjct: 208 FSKLLLGEDXTGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKVKWQREMDWLL 267

Query: 188 SPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFW 247
           SPT +MVELVPA+Q+ ANG+TLEIMTPKARADIHMNLPALQKLDSMLIETLDSMV+TEFW
Sbjct: 268 SPTXYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVDTEFW 327

Query: 248 YAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINE 307
           YAE GSRAEGR +S  +SKRWWLP  QVP +GLSD  RKK+L Q +VV+QVFKAA++INE
Sbjct: 328 YAEGGSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKKLLHQAKVVHQVFKAARAINE 387

Query: 308 NVLLEMPVPTIIKDVLPK--------------------SGKTSLGEELYKVLTAESISSG 347
           NVLLEMPVPT+I+D L K                    SGK +LGEELY+VLTAES S+ 
Sbjct: 388 NVLLEMPVPTLIRDALAKASKLFDLFPSNQSSCLKTLESGKANLGEELYRVLTAESSSTE 447

Query: 348 EMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSP 388
           EM++ LNLKSEHSALEAIN+LEAAVF WKERI+EQ SGKSP
Sbjct: 448 EMLSSLNLKSEHSALEAINRLEAAVFAWKERITEQVSGKSP 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531541|ref|XP_003534336.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/386 (72%), Positives = 331/386 (85%), Gaps = 2/386 (0%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDS 62
           M++MR+RLACCTR++  S+D DEQ+ RIMTY+GLESC+LNNQSY++ESRTSRGD C+TDS
Sbjct: 1   MLMMRKRLACCTREKKFSIDHDEQE-RIMTYNGLESCMLNNQSYEDESRTSRGDECITDS 59

Query: 63  LDDDDSSCSSSKDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVE 122
            DDDDSSCSSSKDAFGSFSSK  TMKR + G E+W  SESP H+ +K+KP YA +  D+E
Sbjct: 60  FDDDDSSCSSSKDAFGSFSSKCLTMKRDDKGLEEWELSESPQHFCVKEKP-YAIQHSDIE 118

Query: 123 TMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQRE 182
            MKE FSKLLLGED+TGG  G++TALALSNAITNL+ SVFGELWKLEPL EERK +WQRE
Sbjct: 119 AMKENFSKLLLGEDVTGGTKGLSTALALSNAITNLSVSVFGELWKLEPLSEERKRKWQRE 178

Query: 183 MDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMV 242
           MDWLLSPTN+MVELVPA+Q+++NG   EIMTPKARADIHMNLPALQKLDSMLIE LDSM+
Sbjct: 179 MDWLLSPTNYMVELVPAKQSSSNGGIFEIMTPKARADIHMNLPALQKLDSMLIEALDSMI 238

Query: 243 NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAA 302
           NTEFWYAE G+RAEGR+   + SKRWWLP  QVP SGLSD+ RK++L   R+V QVFKAA
Sbjct: 239 NTEFWYAEGGNRAEGRDTDAQHSKRWWLPSPQVPKSGLSDTERKRLLHHGRLVRQVFKAA 298

Query: 303 KSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSAL 362
           K+INE+VLLEMPVP IIKD L KSGKT+LG EL+KVLTA+S S  +M+ +LNLKS++  L
Sbjct: 299 KAINESVLLEMPVPAIIKDALAKSGKTNLGHELHKVLTAKSSSGEDMLKYLNLKSKNLVL 358

Query: 363 EAINKLEAAVFTWKERISEQASGKSP 388
           E +N+LEAA+F+WKERISEQ SGKSP
Sbjct: 359 ETVNRLEAAIFSWKERISEQVSGKSP 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496475|ref|XP_003517093.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/387 (72%), Positives = 334/387 (86%), Gaps = 3/387 (0%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDS 62
           M++MR+RLACCTR+R  S+D DEQ+ RIMTY+GLESC+LNNQSY++ESRTSRGD C+TDS
Sbjct: 1   MLMMRKRLACCTRERKFSIDHDEQE-RIMTYNGLESCMLNNQSYEDESRTSRGDECITDS 59

Query: 63  LDDDDSSCSSSKDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVE 122
            DDD+SS SSSKDAFGSFSSK  TMKR + G E+W  SESP H+ +K+KP YA +  D+E
Sbjct: 60  FDDDNSSSSSSKDAFGSFSSKCLTMKRDDKGLEEWELSESPQHFCVKEKP-YAIQHSDIE 118

Query: 123 TMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQRE 182
            MK++FSKLLLGED+TGG  G++TALALSNAITNLA +VFGELWKLEPL EERK +WQRE
Sbjct: 119 AMKDKFSKLLLGEDVTGGTKGLSTALALSNAITNLAVTVFGELWKLEPLSEERKRKWQRE 178

Query: 183 MDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMV 242
           MDWLLSPTN+MVELVPA+Q+++NG   EIMTPKARADIHMNLPALQKLDSMLIETLD M+
Sbjct: 179 MDWLLSPTNYMVELVPAKQSSSNGGIFEIMTPKARADIHMNLPALQKLDSMLIETLDLMM 238

Query: 243 NTEFWYAEVGSRAEG-RNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKA 301
           NTEFWYAE GS+AEG R+ +++ SKRWWLP  QVP +GLSD+ RK++L Q RVV QVFKA
Sbjct: 239 NTEFWYAEGGSQAEGRRDTNSQHSKRWWLPSPQVPKTGLSDTERKRLLHQGRVVRQVFKA 298

Query: 302 AKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSA 361
           AK+INE+VLLEMPVP+IIKD L KSGK +LG+EL+KVL AES S  +M+ +LNLKSEH  
Sbjct: 299 AKAINESVLLEMPVPSIIKDALAKSGKANLGQELHKVLMAESSSGEDMLKYLNLKSEHLV 358

Query: 362 LEAINKLEAAVFTWKERISEQASGKSP 388
           LE +N+LEAA+F+WKERI+EQ SGKSP
Sbjct: 359 LETVNRLEAAIFSWKERIAEQVSGKSP 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557785|ref|XP_002519922.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis] gi|223540968|gb|EEF42526.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/360 (76%), Positives = 321/360 (89%), Gaps = 2/360 (0%)

Query: 31  MTYDGLESCILNNQSYDNESRT--SRGDGCLTDSLDDDDSSCSSSKDAFGSFSSKWSTMK 88
           MTY+GLESCILNNQSY+NES T  S+GDGC++DSLDDD  SCSSSKDAFGSFSSKW T K
Sbjct: 1   MTYNGLESCILNNQSYENESGTGTSQGDGCMSDSLDDDSLSCSSSKDAFGSFSSKWMTAK 60

Query: 89  RVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTAL 148
           + + G +DW  SESP H+++K KPAYA ++ DVETMKE+F+KLLLGEDITGG  G+TTAL
Sbjct: 61  QDDQGLDDWELSESPQHFYVKAKPAYAVQYSDVETMKEKFAKLLLGEDITGGCKGLTTAL 120

Query: 149 ALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQT 208
           ALSNAI NLAASVFGELWKLEPL EE K +W++E+DWLLSPTN+MVELVP +QN ANG+T
Sbjct: 121 ALSNAIANLAASVFGELWKLEPLPEENKKKWRKELDWLLSPTNYMVELVPTKQNGANGRT 180

Query: 209 LEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRW 268
           LEIMTPKARADIH+NLPALQKLDSMLIETLDSMVN EFWY+EVGSRAEGR+KST++SKRW
Sbjct: 181 LEIMTPKARADIHVNLPALQKLDSMLIETLDSMVNNEFWYSEVGSRAEGRSKSTKQSKRW 240

Query: 269 WLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGK 328
           WLPL QVP +GLSDS RKK+L + +VVYQVFKAAKSINEN+LLEMPVPTII+D LPKSGK
Sbjct: 241 WLPLPQVPTTGLSDSERKKLLHKSKVVYQVFKAAKSINENILLEMPVPTIIRDALPKSGK 300

Query: 329 TSLGEELYKVLTAESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSP 388
           T+LGEELYK+LT ES ++ +M+N L+LKSEHSA+E INKLEAA+F WK++I+ Q SGKSP
Sbjct: 301 TNLGEELYKILTTESKTAEDMLNSLDLKSEHSAIEVINKLEAALFAWKQKITAQISGKSP 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484469|ref|XP_003612522.1| Rop guanine nucleotide exchange factor [Medicago truncatula] gi|332688645|gb|AEE89675.1| RopGEF14 [Medicago truncatula] gi|355513857|gb|AES95480.1| Rop guanine nucleotide exchange factor [Medicago truncatula] gi|388504920|gb|AFK40526.1| unknown [Medicago truncatula]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/387 (71%), Positives = 323/387 (83%), Gaps = 2/387 (0%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDEQQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTDS 62
           M  M++ LACC+R + +S+DF + + RIMTY+GLESCILNNQSY+ ESRTSRGDG +TDS
Sbjct: 1   MFRMKKGLACCSRGKKISIDFHDHE-RIMTYNGLESCILNNQSYEEESRTSRGDGGITDS 59

Query: 63  LDDDDSSCSSSKDAFGSFSSKWSTMKRV-EHGSEDWGPSESPNHYHLKQKPAYAFRFLDV 121
            DDDDSSCSSSKDAFGSFSSK  TMKR  E G E+W  SESP H+H+K+KP+YA +  D+
Sbjct: 60  FDDDDSSCSSSKDAFGSFSSKCLTMKREDEQGLEEWELSESPQHFHVKEKPSYAIQHSDI 119

Query: 122 ETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQR 181
           E MKE FSKLLLGED+TGG  G+TTALALSNAITNL+ +VFGELWKLEPL EERKS+W+R
Sbjct: 120 EAMKENFSKLLLGEDVTGGTKGITTALALSNAITNLSVTVFGELWKLEPLSEERKSKWRR 179

Query: 182 EMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSM 241
           EMDWLLSPTN+MVELVPA+QN ANG+  EIMTPKARADIHMNLPALQKLD MLI+ LDSM
Sbjct: 180 EMDWLLSPTNYMVELVPAKQNNANGRIFEIMTPKARADIHMNLPALQKLDCMLIDALDSM 239

Query: 242 VNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKA 301
           V TEFWY E GSR EG++ S R SKRWWLP  QVP +GLSD+ RK+++ Q +VV QVFKA
Sbjct: 240 VKTEFWYGEGGSRTEGKDMSVRHSKRWWLPSPQVPKTGLSDTERKRLVHQGKVVRQVFKA 299

Query: 302 AKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSEHSA 361
           AKSIN+NVLLEMPVP +I+D L KSGK +LG+EL+KVLTAES S  +MI  LNLKSEH A
Sbjct: 300 AKSINDNVLLEMPVPMVIRDALAKSGKANLGQELHKVLTAESTSGEDMIKSLNLKSEHMA 359

Query: 362 LEAINKLEAAVFTWKERISEQASGKSP 388
           LE INKLEA +F+ KER  EQ +GKSP
Sbjct: 360 LETINKLEAVIFSLKERTMEQVTGKSP 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692580|ref|NP_174446.2| RHO guanyl-nucleotide exchange factor 14 [Arabidopsis thaliana] gi|62321355|dbj|BAD94650.1| hypothetical protein [Arabidopsis thaliana] gi|332193259|gb|AEE31380.1| RHO guanyl-nucleotide exchange factor 14 [Arabidopsis thaliana]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/405 (68%), Positives = 330/405 (81%), Gaps = 19/405 (4%)

Query: 3   MMLMRRRLACCTRDRGLSLDFDE-QQDRIMTYDGLESCILNNQSYDNESRTSRGDGCLTD 61
           MMLMRRRLACC+R+R +S+DFDE +QD+++TY GLE+CI+NNQSY+ ES TSRGDGCLTD
Sbjct: 1   MMLMRRRLACCSREREISIDFDEHEQDKMITYYGLETCIINNQSYEEESGTSRGDGCLTD 60

Query: 62  SLDDDD-SSCSSSKDAFGSFSSKWSTMKRVEHG---------SEDWGPSE-------SPN 104
           SLDDD  SSCSSSKDA  SFSSKW  MK  EH          S+ +   E       S  
Sbjct: 61  SLDDDAFSSCSSSKDASSSFSSKWLPMKNDEHSCDGLNLSGRSQHFDAKEKKKQGYGSSQ 120

Query: 105 HYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGE 164
           H+  K+KP Y +  LDVE MKE+FSKLLLGED+TGG  GV  ALALSNA+T+LA S+FGE
Sbjct: 121 HFDAKEKPGYVYCHLDVEAMKEKFSKLLLGEDVTGGCKGVQVALALSNAVTHLATSIFGE 180

Query: 165 LWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNL 224
           LWKLEPL EE+K +W+REMDWLLSPTN+M+ELVP++QN ANG++LEIMTPKARADIHMNL
Sbjct: 181 LWKLEPLCEEKKQKWRREMDWLLSPTNYMIELVPSKQNDANGRSLEIMTPKARADIHMNL 240

Query: 225 PALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSG 284
           PALQKLDSMLIETLDSMVNTEFWY+E+GSRAEG+NKST ESKRWWLP  QVP  GLS+SG
Sbjct: 241 PALQKLDSMLIETLDSMVNTEFWYSEIGSRAEGKNKSTSESKRWWLPSPQVPKPGLSNSG 300

Query: 285 RKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESI 344
           RKK+L + +VVYQVFKA K+INEN+LLEMPVP +IK+ +PKSGK SLG+ELYK+L  ES 
Sbjct: 301 RKKLLDKGKVVYQVFKATKAINENILLEMPVPIVIKEAIPKSGKNSLGDELYKMLAVESA 360

Query: 345 SSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQAS-GKSP 388
           +  E+   LNL +EH+ALE +NKLE+A+F WKERI+EQ S GKSP
Sbjct: 361 TVDEIFISLNLGTEHAALETVNKLESAMFAWKERITEQGSNGKSP 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
TAIR|locus:2028701	576	ROPGEF14 "ROP (rho of plants)	0.724	0.498	0.722	3.2e-134
TAIR|locus:2121828	548	ROPGEF1 "ROP (rho of plants) g	0.651	0.470	0.501	5.8e-66
TAIR|locus:2180781	493	ROPGEF10 "ROP (rho of plants)	0.676	0.543	0.488	1.6e-63
TAIR|locus:2091742	523	ROPGEF8 "ROP (rho of plants) g	0.656	0.497	0.475	1.1e-62
TAIR|locus:2153684	611	ROPGEF5 "ROP (rho of plants) g	0.656	0.425	0.449	1.1e-62
TAIR|locus:2093467	576	ROPGEF13 "ROP (rho of plants)	0.712	0.489	0.447	1.8e-62
TAIR|locus:2126071	473	ROPGEF3 "ROP (rho of plants) g	0.654	0.547	0.459	2.3e-62
TAIR|locus:2119320	517	ROPGEF9 "ROP (rho of plants) g	0.654	0.500	0.480	3e-62
TAIR|locus:2017844	515	ROPGEF12 "ROP (rho of plants)	0.671	0.516	0.461	4.8e-62
TAIR|locus:2198220	485	ROPGEF2 "ROP (rho of plants) g	0.654	0.534	0.470	1.6e-61

TAIR|locus:2028701 ROPGEF14 "ROP (rho of plants) guanine nucleotide exchange factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
 Identities = 208/288 (72%), Positives = 247/288 (85%)

Query:   102 SPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASV 161
             S  H+  K+KP Y +  LDVE MKE+FSKLLLGED+TGG  GV  ALALSNA+T+LA S+
Sbjct:   118 SSQHFDAKEKPGYVYCHLDVEAMKEKFSKLLLGEDVTGGCKGVQVALALSNAVTHLATSI 177

Query:   162 FGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIH 221
             FGELWKLEPL EE+K +W+REMDWLLSPTN+M+ELVP++QN ANG++LEIMTPKARADIH
Sbjct:   178 FGELWKLEPLCEEKKQKWRREMDWLLSPTNYMIELVPSKQNDANGRSLEIMTPKARADIH 237

Query:   222 MNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLS 281
             MNLPALQKLDSMLIETLDSMVNTEFWY+E+GSRAEG+NKST ESKRWWLP  QVP  GLS
Sbjct:   238 MNLPALQKLDSMLIETLDSMVNTEFWYSEIGSRAEGKNKSTSESKRWWLPSPQVPKPGLS 297

Query:   282 DSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTA 341
             +SGRKK+L + +VVYQVFKA K+INEN+LLEMPVP +IK+ +PKSGK SLG+ELYK+L  
Sbjct:   298 NSGRKKLLDKGKVVYQVFKATKAINENILLEMPVPIVIKEAIPKSGKNSLGDELYKMLAV 357

Query:   342 ESISSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQAS-GKSP 388
             ES +  E+   LNL +EH+ALE +NKLE+A+F WKERI+EQ S GKSP
Sbjct:   358 ESATVDEIFISLNLGTEHAALETVNKLESAMFAWKERITEQGSNGKSP 405

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2121828 ROPGEF1 "ROP (rho of plants) guanine nucleotide exchange factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 134/267 (50%), Positives = 185/267 (69%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             ++E MKERF+KLLLGED++GG  GV TALA+SNAITNL+A+VFGELW+LEPL  ++K+ W
Sbjct:    90 EIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 149

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             +RE++WLL  ++ +VEL+P+ Q    G T EIM  + R+D++ NLPAL+KLD+MLI+ LD
Sbjct:   150 RRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLD 209

Query:   240 SMVNTEFWYAEVG-----SRAEGRNK--STRESKRWWLPLAQVPASGLSDSGRKKMLSQC 292
             +  +TEFWY + G        +  N   S R+  +WWLP  +VP +GLS+  RKK L QC
Sbjct:   210 AFSDTEFWYTDRGIVLGDCDKDSYNSPASVRQEDKWWLPCPKVPPNGLSEEARKK-LQQC 268

Query:   293 R-VVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMIN 351
             R    Q+ KAA +IN  VL EM +P    + LPKSGK  LGE +Y+ LTA   S   +++
Sbjct:   269 RDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLD 328

Query:   352 FLNLKSEHSALEAINKLEAAVFTWKER 378
              L+L SEH  LE  N++EAAV  W+++
Sbjct:   329 CLDLSSEHQTLEIANRIEAAVHVWRQK 355

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2180781 ROPGEF10 "ROP (rho of plants) guanine nucleotide exchange factor 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 132/270 (48%), Positives = 179/270 (66%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             D+E MKERF+KLLLGED++GG  G T+ALALSNAIT LA S+FGE  KL+P+  E K  W
Sbjct:    44 DMEVMKERFAKLLLGEDMSGGGTGETSALALSNAITKLADSMFGEQMKLQPMYPETKENW 103

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             ++EM WLLS  + +V+ VP+RQ   NGQ  EIM  K R D+  N+PAL+KLDS+L+ETLD
Sbjct:   104 RKEMGWLLSVIDHIVQFVPSRQMGKNGQFTEIMVTKQRDDLLTNIPALRKLDSVLLETLD 163

Query:   240 SMVNT-EFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
             +  +  +FWY          N   R  + WWLP+ +VP  GLS+  R+ + +Q   V QV
Sbjct:   164 NFKDQKDFWYVPRDMEDADHNGDWRRDENWWLPVVKVPTDGLSEESRRWLQNQKDSVAQV 223

Query:   299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
              KAA +IN +VL EM VP    D LPK+GKTSLG+ LYK +T ES      ++FL+L +E
Sbjct:   224 LKAATAINAHVLSEMHVPENYIDSLPKNGKTSLGDFLYKSITEESFDPDYFVSFLDLSTE 283

Query:   359 HSALEAINKLEAAVFTWKERISE-QASGKS 387
             H  L+  N++EA++  WK ++ + +  GKS
Sbjct:   284 HKVLDLKNRIEASMVIWKRKMCQKEKDGKS 313

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2091742 ROPGEF8 "ROP (rho of plants) guanine nucleotide exchange factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 124/261 (47%), Positives = 182/261 (69%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             D+E MK+RF+KLLLGED++GG  GV++ALALSNAITNLAAS+FGE  KL+P+ ++R++RW
Sbjct:    85 DMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARW 144

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             ++E+DWLLS T+ +VE VP++Q + +G   EIM  + R D+ MN+PAL+KLD+MLI+TLD
Sbjct:   145 KKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLD 204

Query:   240 SMV-NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
             +   + EFWY    S    + ++ R + +WWLP  +VP  GLS+  R+ +  Q   V QV
Sbjct:   205 NFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQV 264

Query:   299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
              KAA +IN  VL EM +P    D LPK+G+ SLG+ +YK +T E     + +  L++ +E
Sbjct:   265 QKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLDMSTE 324

Query:   359 HSALEAINKLEAAVFTWKERI 379
             H  L+  N++EA+V  WK ++
Sbjct:   325 HKVLDLKNRIEASVVIWKRKL 345

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2153684 ROPGEF5 "ROP (rho of plants) guanine nucleotide exchange factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 120/267 (44%), Positives = 184/267 (68%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             DVE MKERF+KLLLGED++G   GV TALA+SNAITNL A++FG+LW+LEPL  E+K  W
Sbjct:   102 DVEMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATIFGQLWRLEPLSSEKKEMW 161

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             +REM+W+LS ++ +VEL P+ Q   +G   E+MT + R D+ +NLPAL+KLD+ML++ L 
Sbjct:   162 RREMEWILSVSDHIVELTPSTQTYPDGNKFEVMTCRPRFDLFINLPALRKLDNMLLDILA 221

Query:   240 SMVNTEFWYAEVG---SRAEG----RNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQC 292
             S   TEFWY + G   S  +G    R K  R+ ++WWLP+ ++  +GL++  R ++  + 
Sbjct:   222 SFKKTEFWYVDQGIVASENDGSASFRRKIQRQEEKWWLPVPRLAPNGLTEEARTELNHKR 281

Query:   293 RVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINF 352
                 Q+ KAA +IN   L EM VP    + LPK+G++ LG+ +Y+ +T++  S+  +++ 
Sbjct:   282 ECATQILKAAMAINSLALTEMDVPKSYLETLPKNGRSCLGDVIYRYVTSDKFSAESLLDC 341

Query:   353 LNLKSEHSALEAINKLEAAVFTWKERI 379
             L+L SEH AL+  N++EA+++ W+ R+
Sbjct:   342 LDLSSEHIALDIANRVEASIYVWRRRV 368

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2093467 ROPGEF13 "ROP (rho of plants) guanine nucleotide exchange factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 127/284 (44%), Positives = 185/284 (65%)

Query:   108 LKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWK 167
             L+ K  Y     ++E MK++F+KLLLGED++GG  GV++ALALSNAITNLAAS FGE+ +
Sbjct:   116 LQAKSCYFAYVTELEQMKDKFAKLLLGEDMSGGSKGVSSALALSNAITNLAASAFGEIRR 175

Query:   168 LEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPAL 227
             LE + E++K RW+RE+ WLLS T+ +VE  P  Q   +G ++E+MT K R D+  N+P+L
Sbjct:   176 LEAISEDKKERWRREIGWLLSVTDHIVEFSPTHQTNEDGSSMEVMTTKQRTDLVSNIPSL 235

Query:   228 QKLDSMLIETLDSMVNT-EFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRK 286
             +KLD ML++ LD   +  EF+Y   GS     + STR   +WWLP+ +VP  GLS++ ++
Sbjct:   236 KKLDEMLLDCLDKFKDQDEFYYVTPGSPESENSNSTRNDDKWWLPIVKVPPKGLSETLKR 295

Query:   287 KMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISS 346
              +LSQ   V QV  +A +IN  VL EM +P    D LPK G+ SLG+ +Y+++T E   +
Sbjct:   296 FLLSQRECVCQVLNSAMAINSQVLTEMEIPESYIDSLPKKGRASLGDMIYRMITLEMFDA 355

Query:   347 GEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPCP 390
              + +  ++L SEH  L+  NK EA+V  W+ +I  Q   KS  P
Sbjct:   356 EQFLLEMDLSSEHKILDLKNKFEASVVIWQRKIV-QIDNKSSSP 398

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126071 ROPGEF3 "ROP (rho of plants) guanine nucleotide exchange factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 124/270 (45%), Positives = 189/270 (70%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             ++ETMKERF+KLLLGED++G   GV TA+ +SNAITNL A+VFG+  +LEPL  E+++ W
Sbjct:   104 ELETMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALW 163

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             +REM+ LLS  +++VE +P  QN +NG T+E+M  + RADI++NLPAL+KLDSML+E LD
Sbjct:   164 KREMNCLLSVCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 223

Query:   240 SMVNTEFWYAEVGSRA-EGRNKST---------RESKRWWLPLAQVPASGLSDSGRKKML 289
             S  NTEFWYAE GS + +    ST         R+ ++WWLP+  VP+ GLSD  RK++ 
Sbjct:   224 SFQNTEFWYAEEGSLSMKSARSSTGSFRKVIVQRKEEKWWLPVPLVPSEGLSDKARKQLK 283

Query:   290 SQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAES-ISSGE 348
             ++     Q+ KAA +IN ++L EM +P      LPK GK+S+G+ +Y+ ++        +
Sbjct:   284 NKRESTNQIHKAAMAINSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGRFFPEQ 343

Query:   349 MINFLNLKSEHSALEAINKLEAAVFTWKER 378
             +++ LN+ SEH A++  +++EA+++TW+ +
Sbjct:   344 LLDCLNISSEHEAVQLADRVEASMYTWRRK 373

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2119320 ROPGEF9 "ROP (rho of plants) guanine nucleotide exchange factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 126/262 (48%), Positives = 183/262 (69%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             + E MK+RF+KLLLGED++GG  GV++ALALSNAITNLAAS+FGE  KL+P+  +R++RW
Sbjct:    74 ETEMMKDRFTKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMAPDRRARW 133

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             ++E+DWLLS T+ +VE VP++Q +  G   EIM  + R D+ MN+PAL+KLD+MLI+TLD
Sbjct:   134 KKEIDWLLSVTDHIVEFVPSQQISKEGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLD 193

Query:   240 SMV-NTEFWYAEVGSRAEGRN-KSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQ 297
             +   + EFWY    S  EG+  ++ R   +WWLP  +VP +GLS+S R+ +  Q   V Q
Sbjct:   194 NFRGHNEFWYVSRDSE-EGKQARNERTKDKWWLPPVKVPPNGLSESARRMLHFQKDSVSQ 252

Query:   298 VFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKS 357
             V KAA +IN  VL EM +P    + LPK+G+ SLG+ LYK +T E     + ++ L+L +
Sbjct:   253 VQKAAMAINAQVLSEMAIPDSYIESLPKNGRVSLGDSLYKSITEEWFDPEQFLSTLDLST 312

Query:   358 EHSALEAINKLEAAVFTWKERI 379
             EH  L+  N++EA++  WK ++
Sbjct:   313 EHKVLDVKNRIEASIVIWKRKL 334

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2017844 ROPGEF12 "ROP (rho of plants) guanine nucleotide exchange factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 126/273 (46%), Positives = 188/273 (68%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             D+E MKERFSKLLLGED +GG  GV++ALALSNAITNLAASVFGE  +LEP+  ER++RW
Sbjct:    92 DMEQMKERFSKLLLGEDNSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMPAERRARW 151

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             ++E+DWLLS T+++VE  P++Q   +G  +EIMT + R D+HMN+PAL+KLD+MLI+ L+
Sbjct:   152 RKEIDWLLSVTDYVVEFAPSQQKNKDGTNMEIMTTRQRTDLHMNIPALKKLDAMLIDCLE 211

Query:   240 SMVN-TEFWYAEVGSR-AEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQ 297
             +  + +EF Y    S   +G+    R  ++WW+P  +VP  GLS++ R+ +  Q   V Q
Sbjct:   212 NFKDQSEFSYISKDSPDLDGK----RNDEKWWIPTVKVPPDGLSEASRRFLQYQKDCVNQ 267

Query:   298 VFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKS 357
             V KAA +IN  VL EM +P    D LPK+G+ SLG+++YK +T +     + ++ +++ S
Sbjct:   268 VLKAAMAINAQVLFEMEIPESYIDSLPKNGRASLGDQMYKNITVDFFDPDQFLSSMDMSS 327

Query:   358 EHSALEAINKLEAAVFTWKERISEQASGKSPCP 390
             EH  ++  N++EA++  WK ++  +   KS  P
Sbjct:   328 EHKIVDLKNRIEASIIIWKRKMVYK-DNKSSAP 359

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0090406 "pollen tube" evidence=IDA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2198220 ROPGEF2 "ROP (rho of plants) guanine nucleotide exchange factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 127/270 (47%), Positives = 185/270 (68%)

Query:   120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
             ++ETMKERFSKLLLGED++G   GV TA+ +SNAITNL A+VFG+  +LEPL  E+K+ W
Sbjct:   116 ELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTW 175

Query:   180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
             +REM+ LLS  +++ E +P  QN +NG T+E+M  + RADI++NLPAL+KLDSML+E LD
Sbjct:   176 KREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 235

Query:   240 SMVNTEFWYAEVGSRAEGRNKST----------RESKRWWLPLAQVPASGLSDSGRKKML 289
             S   TEFWYAE GS +    +S           R+ ++WWLP+  VP  GLS+  RK++ 
Sbjct:   236 SFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLK 295

Query:   290 SQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGE- 348
             S+     Q+ KAA +IN ++L EM +P      LPKSGK S G+ +Y+ +T+    S E 
Sbjct:   296 SKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPEK 355

Query:   349 MINFLNLKSEHSALEAINKLEAAVFTWKER 378
             +++ L + SEH AL+  +++EA+++TW+ +
Sbjct:   356 LLDRLKIVSEHEALQLADRVEASMYTWRRK 385

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.29.128.1 hypothetical protein (491 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	396
pfam03759	360	pfam03759, PRONE, PRONE (Plant-specific Rop nucleo	1e-138

>gnl|CDD|217715 pfam03759, PRONE, PRONE (Plant-specific Rop nucleotide exchanger)

 Score =  399 bits (1026), Expect = e-138
 Identities = 140/270 (51%), Positives = 202/270 (74%), Gaps = 1/270 (0%)

Query: 119 LDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSR 178
            ++E MKERF+KLLLGED++GG  GV+TALALSNAITNLAA+VFGELW+LEPL  E+K+ 
Sbjct: 3   SEMELMKERFAKLLLGEDMSGGGKGVSTALALSNAITNLAATVFGELWRLEPLAPEKKAM 62

Query: 179 WQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETL 238
           W+REMDWLLS T+++VE VP++Q   +G T+E+MT + R+D++MNLPAL+KLD+ML+E L
Sbjct: 63  WRREMDWLLSVTDYIVEFVPSKQTLPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLLEIL 122

Query: 239 DSMVNTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
           DS  +TEFWY + GS +  R KS R+ ++WWLP+ +VP  GLS+S RKK+  +   V Q+
Sbjct: 123 DSFKDTEFWYVDQGSLSSFRRKSQRQEEKWWLPVPKVPPGGLSESSRKKLQHKRDCVNQI 182

Query: 299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
            KAA +IN  VL EM +P    + LPK+G+ SLG+ +Y+ +T++  S  ++++ L+L SE
Sbjct: 183 LKAAMAINSQVLAEMEIPESYIESLPKNGRASLGDAIYRYITSDQFSPDQLLDCLDLSSE 242

Query: 359 HSALEAINKLEAAVFTWKERISEQASGKSP 388
           H ALE  N++EA+++ W+ +   +   KS 
Sbjct: 243 HKALELANRIEASMYIWRRKAHTK-DSKSS 271

This is a functional guanine exchange factor (GEF) of plant Rho GTPase. Length = 360

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
PF03759	365	PRONE: PRONE (Plant-specific Rop nucleotide exchan	100.0

>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli

Probab=100.00  E-value=3.1e-156  Score=1127.23  Aligned_cols=272  Identities=52%  Similarity=0.893  Sum_probs=218.7

Q ss_pred             cchHHHHHHHHhhhhccCCCCCCCCchhhHHHHhhhhhhhHHhhhccccccccCcHHHHhhhhhccceeecccceeEEee
Q 016074          118 FLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELV  197 (396)
Q Consensus       118 ~se~E~MKErFaKLLLGEDMSG~gKGV~tALAiSNAITNL~AtvFGelwrLEPl~~ekK~~WrREmdwLLSv~D~IVElv  197 (396)
                      .+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||||
T Consensus         2 ~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AtvFGe~~rLEPl~~ekk~~WrrEm~wLLsv~d~iVE~v   81 (365)
T PF03759_consen    2 PSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLAATVFGELWRLEPLSPEKKAMWRREMDWLLSVTDYIVELV   81 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTTBTTSSS-S--HHHHHHHHHHHHHHHHHTT--SSS---HHHHHHHHHHHHHHHGGGGG-EEEE
T ss_pred             chHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHhcceeecchhhhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCceEEeeccccccccccCchhHHHHHHHHHHHhhcCCCCeeEEeecCCcc------CCCCccccCCCccccc
Q 016074          198 PARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRA------EGRNKSTRESKRWWLP  271 (396)
Q Consensus       198 Ps~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~dtEFWYv~~g~~~------~~r~~~~R~eeKWWLP  271 (396)
                      |++|++|||+++|||+||||+|||||||||||||+||||+||||+|||||||++|+.+      +.|...+||++|||||
T Consensus        82 Ps~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLie~LDsf~dtEFwYv~~g~~~~~~~~~~~~~~~~r~~~KWWLP  161 (365)
T PF03759_consen   82 PSKQTFPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLIEILDSFKDTEFWYVDQGIVADSDSSSSFRRSSQRQEEKWWLP  161 (365)
T ss_dssp             EEEEE-TTS-EEEEEEEEE-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TT------SHHHHT------CCCTTS-
T ss_pred             cceeecCCCceEEEEecCccchhhcCcHHHHHHHHHHHHHHHhCCCCeeEEecCCcccccccCccccCcccccCCcccCC
Confidence            9999999999999999999999999999999999999999999999999999999554      3467899999999999


Q ss_pred             cccCCCCCCChHHhhhhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhhcCCCCCCchhHHHHHHhhccCCChhhhhh
Q 016074          272 LAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMIN  351 (396)
Q Consensus       272 ~p~VP~~GLSe~~RK~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~  351 (396)
                      +|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+||||+||+
T Consensus       162 ~p~VP~~GLse~~rK~L~~~rd~~~QilKAAmaIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~~~Fspe~ll~  241 (365)
T PF03759_consen  162 VPRVPPNGLSEESRKWLQHQRDCVNQILKAAMAINSQVLAEMEIPESYLESLPKNGRASLGDSIYRYITSEQFSPEQLLD  241 (365)
T ss_dssp             -EE--TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHCS-SSHHHHHHHHHHHHCTSSS--HHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccccHHHHHHHHhccCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcchhHHHHhhhhhhHHHHHHHhhhhcccCCCCCCCCcc
Q 016074          352 FLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMV  394 (396)
Q Consensus       352 ~ldlsSEH~aLelanRiEAsi~iWrrk~~~~~~~ks~~r~SW~  394 (396)
                      ||||||||+|||+|||||||||+||||++++     ++|+||+
T Consensus       242 ~ldlssEH~~le~~NRvEAai~vWrrK~~~k-----~~ksSWg  279 (365)
T PF03759_consen  242 CLDLSSEHKALELANRVEAAIYVWRRKICEK-----DSKSSWG  279 (365)
T ss_dssp             TS--SSHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHHHhcCC-----CCccchh
Confidence            9999999999999999999999999999875     6677883

Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	396
2nty_A	365	Rop4-Gdp-Prone8 Length = 365		4e-68
2ntx_A	365	Prone8 Length = 365		1e-59

>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8 Length = 365

Iteration: 1
 Score =  254 bits (650), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
           D+E MK+RF+KLLLGED++GG  GV++ALALSNAITNLAAS+FGE  KL+P+ ++R++RW
Sbjct: 10  DMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARW 69
Query: 180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
           ++E+DWLLS T+ +VE VP++Q + +G   EIM  + R D+ MN+PAL+KLD+MLI+TLD
Sbjct: 70  KKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLD 129
Query: 240 SMV-NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
           +   + EFWY    S    + ++ R + +WWLP  +VP  GLS+  R+ +  Q   V QV
Sbjct: 130 NFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQV 189
Query: 299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
            KAA +IN  VL EM +P    D LPK+G+ SLG+ +YK +T E     + +  L++ +E
Sbjct: 190 QKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLDMSTE 249
Query: 359 HSALEAINKLEAAVFTWKERI 379
           H  L+  N++EA+V  WK ++
Sbjct: 250 HKVLDLKNRIEASVVIWKRKL 270

>pdb|2NTX|A Chain A, Prone8 Length = 365

Iteration: 1
 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 173/261 (66%), Gaps = 1/261 (0%)
Query: 120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
           D E  K+RF+KLLLGED +GG  GV++ALALSNAITNLAAS+FGE  KL+P  ++R++RW
Sbjct: 10  DXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPXPQDRQARW 69
Query: 180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
           ++E+DWLLS T+ +VE VP++Q + +G   EI   + R D+  N+PAL+KLD+ LI+TLD
Sbjct: 70  KKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLDAXLIDTLD 129
Query: 240 SMV-NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
           +   + EFWY    S    + ++ R + +WWLP  +VP  GLS+  R+ +  Q   V QV
Sbjct: 130 NFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRXLYFQKDSVTQV 189
Query: 299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
            KAA +IN  VL E  +P    D LPK+G+ SLG+ +YK +T E     + +  L+  +E
Sbjct: 190 QKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAXLDXSTE 249
Query: 359 HSALEAINKLEAAVFTWKERI 379
           H  L+  N++EA+V  WK ++
Sbjct: 250 HKVLDLKNRIEASVVIWKRKL 270

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	396
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	1e-123
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A Length = 365

 Score =  358 bits (921), Expect = e-123
 Identities = 125/271 (46%), Positives = 185/271 (68%), Gaps = 1/271 (0%)

Query: 119 LDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSR 178
            D+E MK+RF+KLLLGED++GG  GV++ALALSNAITNLAAS+FGE  KL+P+ ++R++R
Sbjct: 9   ADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQAR 68

Query: 179 WQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETL 238
           W++E+DWLLS T+ +VE VP++Q + +G   EIM  + R D+ MN+PAL+KLD+MLI+TL
Sbjct: 69  WKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTL 128

Query: 239 DSMV-NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQ 297
           D+   + EFWY    S    + ++ R + +WWLP  +VP  GLS+  R+ +  Q   V Q
Sbjct: 129 DNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQ 188

Query: 298 VFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKS 357
           V KAA +IN  VL EM +P    D LPK+G+ SLG+ +YK +T E     + +  L++ +
Sbjct: 189 VQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLDMST 248

Query: 358 EHSALEAINKLEAAVFTWKERISEQASGKSP 388
           EH  L+  N++EA+V  WK ++  + +  S 
Sbjct: 249 EHKVLDLKNRIEASVVIWKRKLHTKDTKSSW 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 50/414 (12%), Positives = 116/414 (28%), Gaps = 128/414 (30%)

Query: 1   MKMML-MRRRLAC-----CTRDRGLSLDFDEQQD---RIMTYDGLESC--ILNN------ 43
           ++M+  +  ++             + L     Q    R++     E+C  +L N      
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 44  -QSYDNESR---TSRGDGCLTDSLDDDDSSCSSSKDAFGSFS--------SKWSTMK--- 88
             +++   +   T+R    +TD L    ++  S      + +         K+   +   
Sbjct: 259 WNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 89  ------------------RVEHGSEDWGPSESPNHYHLKQKPAYAFRFLDVETMKERFSK 130
                              +  G   W   +  N   L      +   L+    ++ F +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 131 L-LLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSP 189
           L +                       ++   +   +W  + +  +               
Sbjct: 378 LSVFPPS------------------AHIPTILLSLIW-FDVIKSD--------------V 404

Query: 190 TNFMVELVPARQNAANGQ----TLEIM--------TPKARADIHM------NLPALQKLD 231
              + +L   + +    Q    T+ I           +    +H       N+P     D
Sbjct: 405 MVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 232 SMLIETLDSMVNTEFWYAEVG---SRAEGRNKSTRESKRWWLPL----AQVPASGLSDSG 284
            ++   LD      ++Y+ +G      E   +     +  +L       ++     + + 
Sbjct: 463 DLIPPYLDQ-----YFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 285 RKKMLSQCRVVYQVFKAAKSINEN-VLLEMPVPTIIKDVLPKSGKTSLGEELYK 337
              +L+    + Q+      I +N    E  V  I+ D LPK     + E L  
Sbjct: 517 SGSILN---TLQQLKFYKPYICDNDPKYERLVNAIL-DFLPK-----IEENLIC 561

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	396
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	100.0

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A

Probab=100.00  E-value=1.4e-155  Score=1119.26  Aligned_cols=274  Identities=45%  Similarity=0.789  Sum_probs=230.3

Q ss_pred             cccchHHHHHHHHhhhhccCCCCCCCCchhhHHHHhhhhhhhHHhhhccccccccCcHHHHhhhhhccceeecccceeEE
Q 016074          116 FRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVE  195 (396)
Q Consensus       116 ~~~se~E~MKErFaKLLLGEDMSG~gKGV~tALAiSNAITNL~AtvFGelwrLEPl~~ekK~~WrREmdwLLSv~D~IVE  195 (396)
                      ...+|+|||||||||||||||||||||||||||||||||||||||||||+||||||+||||+||||||||||||||||||
T Consensus         6 ~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IVE   85 (365)
T 2ntx_A            6 RQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVE   85 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCEE
T ss_pred             CCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccCCCCceEEeeccccccccccCchhHHHHHHHHHHHhhcCCC-CeeEEeecCCccCCCCccccCCCcccccccc
Q 016074          196 LVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVN-TEFWYAEVGSRAEGRNKSTRESKRWWLPLAQ  274 (396)
Q Consensus       196 lvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYv~~g~~~~~r~~~~R~eeKWWLP~p~  274 (396)
                      ||||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+....+...|||++|||||+|+
T Consensus        86 ~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~~~~~~~~~r~eeKWWLP~p~  165 (365)
T 2ntx_A           86 FVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVK  165 (365)
T ss_dssp             EEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC--------------------CCCEE
T ss_pred             eccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCccccCCcccccccccCCCCC
Confidence            999999999999999999999999999999999999999999999999 9999999998776677889999999999999


Q ss_pred             CCCCCCChHHhhhhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhhcCCCCCCchhHHHHHHhhccCCChhhhhhhcC
Q 016074          275 VPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLN  354 (396)
Q Consensus       275 VP~~GLSe~~RK~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~~ld  354 (396)
                      |||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+||||+||+|||
T Consensus       166 VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~~ld  245 (365)
T 2ntx_A          166 VPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLD  245 (365)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHTCSSCCHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHhhccCCHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhHHHHhhhhhhHHHHHHHhhhhcccCCCCCCCCcc
Q 016074          355 LKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMV  394 (396)
Q Consensus       355 lsSEH~aLelanRiEAsi~iWrrk~~~~~~~ks~~r~SW~  394 (396)
                      |||||+|||+|||||||||+||||++++ ++    ++||+
T Consensus       246 lssEH~~le~anRiEAsi~vWrrk~~~k-~~----kssW~  280 (365)
T 2ntx_A          246 MSTEHKVLDLKNRIEASVVIWKRKLHTK-DT----KSSWG  280 (365)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhhcCC-CC----CCCCc
Confidence            9999999999999999999999999763 34    45675

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00