Citrus Sinensis ID: 016102

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccEEEEEcccEEEEEcEEEEEEEccccHHHHHHHHHHccccccccccEEEEEEccccccccccccccccEEEEEEEcccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHcHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEccccEEcccccccHHHHHHccccccccccccccccccHHHHHHHHHccccccc
cccccccccccccccccccccccccccccccHHHccccccccccccccccEEEEEcHHHHccccHHccccHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEccccccccEEEEccccEEEEccEEEEEEcccccHHHHHHHHHHccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcEEEccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEccccEEcccccccHHHHHHccccEEEEEEccccccccHHHHHHHHHccccccc
mppttavsasssftlfrvpsswstklkptttyiqipnrffpkhptfkmtTTTIRAAVSIeketpeterpptflresddkesssssaSSVRARFEKMIRDAQDSVCQAIEktdgggkfkedvwsrpgggggisrvlqdgaiwekaGVNVSVVYGVMPPEAYRAAKaaasdekpgpipffaagissvlhpknpfaptlhfnyryfetdapkdtpgaprqwwfgggtdltpayifeedvkhfhstqksacdkfdptfyprfkkwcddYFYIkhrgerrglgglffddlnDYDQEMLLSFATECAnsvipayipiiekrkdtpftdQHKAWQQLRrgryvefnlvydrgttfglktggrIESILVslpltarweydhnpkegsEEWKLLdacinpkewi
mppttavsasssftlfrvpsswstklkptttyiqipnrffpkhptfkMTTTTIRAAvsieketpeterpptflresddkesssssassvRARFEKMIRDAQDSVCQAiektdgggkfkedvwsrpggggGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHstqksacdkfdptFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAwqqlrrgryvefNLVYDRgttfglktggriESILVSLPLTARWEYdhnpkegseewklldacinpkewi
MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKetpeterpptFLRESDDKEsssssassVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEayraakaaaSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHrgerrglgglFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI
************FTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAV*****************************************************************************LQDGAIWEKAGVNVSVVYGVMPPEAYR************PIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHN*****EEWKLLDACI******
**************************************FFPKHPTFKMT******************************************RFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMP*******************PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI
***********SFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIE******************************ARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYR********EKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI
************************************************TTTTIRAAVSIEKETP**ERPPTFLRESD******SSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPK***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
P35055385 Coproporphyrinogen-III ox yes no 0.972 0.997 0.794 0.0
Q9LR75386 Coproporphyrinogen-III ox yes no 0.888 0.909 0.857 1e-180
Q42946397 Coproporphyrinogen-III ox N/A no 0.977 0.972 0.767 1e-171
Q7XPL2399 Coproporphyrinogen-III ox yes no 0.858 0.849 0.811 1e-171
Q42840391 Coproporphyrinogen-III ox N/A no 0.848 0.856 0.776 1e-156
Q9V3D2390 Coproporphyrinogen-III ox yes no 0.794 0.805 0.554 1e-106
P36551454 Coproporphyrinogen-III ox yes no 0.767 0.667 0.558 1e-103
Q3B7D0443 Coproporphyrinogen-III ox yes no 0.767 0.683 0.561 1e-101
P36552443 Coproporphyrinogen-III ox yes no 0.767 0.683 0.541 5e-98
P11353328 Coproporphyrinogen-III ox yes no 0.767 0.923 0.512 2e-91
>sp|P35055|HEM6_SOYBN Coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1 Back     alignment and function desciption
 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/395 (79%), Positives = 335/395 (84%), Gaps = 11/395 (2%)

Query: 1   MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIE 60
           M   + VSA S    FR     S     T T I +  R +   P+  M    +RA VSIE
Sbjct: 2   MHCASIVSAPSYAFPFR-----SGSASTTPTAISLTKRSWKPPPS--MAKGPVRATVSIE 54

Query: 61  KETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKED 120
           KETPE  RP TFLR  D+ +SS+S    VRARFEKMIR+AQD+VC A+E  DGG +FKED
Sbjct: 55  KETPEANRPETFLRGVDEAQSSTS----VRARFEKMIREAQDTVCSALEAADGGAQFKED 110

Query: 121 VWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAA 180
           VWSRPGGGGGISRVLQDGA+WEKAGVNVSVVYGVMPP+AYRAAK   +D+KPGP+PFFAA
Sbjct: 111 VWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAA 170

Query: 181 GISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFH 240
           GISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTPAYIFEEDVKHFH
Sbjct: 171 GISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFH 230

Query: 241 STQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATEC 300
           S QK ACDKF+PTFYPRFKKWCDDYFYIKHRGERRGLGG+FFDDLNDYDQEMLLSFATEC
Sbjct: 231 SIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATEC 290

Query: 301 ANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESIL 360
           ANSVIPAY+PIIEKRKD PF D  KAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESIL
Sbjct: 291 ANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESIL 350

Query: 361 VSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
           VSLPLTARWEYDH P+EGSEEWKLLDACINPKEWI
Sbjct: 351 VSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI 385
Key enzyme in heme biosynthesis. Catalyzes the oxidative decarboxylation of propionic acid side chains of rings A and B of coproporphyrinogen III.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 3
>sp|Q9LR75|HEM6_ARATH Coproporphyrinogen-III oxidase, chloroplastic OS=Arabidopsis thaliana GN=CPX PE=1 SV=1 Back     alignment and function description
>sp|Q42946|HEM6_TOBAC Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1 Back     alignment and function description
>sp|Q7XPL2|HEM6_ORYSJ Coproporphyrinogen-III oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=CPX PE=2 SV=2 Back     alignment and function description
>sp|Q42840|HEM6_HORVU Coproporphyrinogen-III oxidase, chloroplastic OS=Hordeum vulgare GN=CPX PE=2 SV=1 Back     alignment and function description
>sp|Q9V3D2|HEM6_DROME Coproporphyrinogen-III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1 Back     alignment and function description
>sp|P36551|HEM6_HUMAN Coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3 Back     alignment and function description
>sp|Q3B7D0|HEM6_RAT Coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus GN=Cpox PE=2 SV=1 Back     alignment and function description
>sp|P36552|HEM6_MOUSE Coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus GN=Cpox PE=1 SV=2 Back     alignment and function description
>sp|P11353|HEM6_YEAST Coproporphyrinogen-III oxidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEM13 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
225464720401 PREDICTED: coproporphyrinogen-III oxidas 0.964 0.950 0.797 0.0
147782894345 hypothetical protein VITISV_044041 [Viti 0.853 0.976 0.893 0.0
255554717393 coproporphyrinogen III oxidase, putative 0.855 0.860 0.893 0.0
388515395398 unknown [Lotus japonicus] 0.881 0.874 0.871 0.0
462260385 RecName: Full=Coproporphyrinogen-III oxi 0.972 0.997 0.794 0.0
356553641385 PREDICTED: coproporphyrinogen-III oxidas 0.913 0.937 0.833 0.0
297848564387 coproporphyrinogen III oxidase [Arabidop 0.964 0.984 0.793 1e-180
240254000386 Coproporphyrinogen III oxidase [Arabidop 0.888 0.909 0.857 1e-178
357495593399 Coproporphyrinogen-III oxidase [Medicago 0.984 0.974 0.792 1e-177
449459988398 PREDICTED: coproporphyrinogen-III oxidas 0.860 0.854 0.885 1e-173
>gi|225464720|ref|XP_002263190.1| PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/409 (79%), Positives = 346/409 (84%), Gaps = 28/409 (6%)

Query: 5   TAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRA--------- 55
           TA  +SSS TLF + SS +    P T+            P+F +  T++R          
Sbjct: 3   TATLSSSSLTLFPLSSSPTPPRIPCTSTTLT-------FPSFLVKPTSVRMMGRGSHILP 55

Query: 56  --AVSIEKETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDG 113
             AV+IEKETPE ERP TFLRESD     + S SSVR RFEKMIRDAQD VCQAIE  DG
Sbjct: 56  PKAVAIEKETPENERPSTFLRESD---GDNHSLSSVRGRFEKMIRDAQDCVCQAIEAADG 112

Query: 114 GGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAAS----- 168
           GGKFKEDVWSRPGGGGGISRVLQDGA+WEKAGVNVSVVYGVMPPEAYRAAK A+S     
Sbjct: 113 GGKFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPEAYRAAKPASSTDSSS 172

Query: 169 --DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDL 226
             + KPGP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDL
Sbjct: 173 DLNHKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDL 232

Query: 227 TPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLN 286
           TPAYIFEEDVKHFHS QKSACDKFDP+FYPRFKKWCDDYFYIKHRGERRGLGG+FFDDLN
Sbjct: 233 TPAYIFEEDVKHFHSVQKSACDKFDPSFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLN 292

Query: 287 DYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGT 346
           DYDQEMLLSFATECANSV+PAY+PIIEKRKD PFTD+HKAWQQLRRGRYVEFNLVYDRGT
Sbjct: 293 DYDQEMLLSFATECANSVVPAYLPIIEKRKDVPFTDRHKAWQQLRRGRYVEFNLVYDRGT 352

Query: 347 TFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
           TFGLKTGGRIESILVSLPLTARWEYDH P+EGSEEWKLLDACINPKEWI
Sbjct: 353 TFGLKTGGRIESILVSLPLTARWEYDHQPEEGSEEWKLLDACINPKEWI 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147782894|emb|CAN76809.1| hypothetical protein VITISV_044041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554717|ref|XP_002518396.1| coproporphyrinogen III oxidase, putative [Ricinus communis] gi|223542241|gb|EEF43783.1| coproporphyrinogen III oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388515395|gb|AFK45759.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|462260|sp|P35055.1|HEM6_SOYBN RecName: Full=Coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; Flags: Precursor gi|414666|emb|CAA50400.1| coproporphyrinogen oxidase [Glycine max] gi|414667|emb|CAA50401.1| coproporphyrinogen oxidase [Glycine max] Back     alignment and taxonomy information
>gi|356553641|ref|XP_003545162.1| PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297848564|ref|XP_002892163.1| coproporphyrinogen III oxidase [Arabidopsis lyrata subsp. lyrata] gi|297338005|gb|EFH68422.1| coproporphyrinogen III oxidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240254000|ref|NP_171847.4| Coproporphyrinogen III oxidase [Arabidopsis thaliana] gi|13431553|sp|Q9LR75.1|HEM6_ARATH RecName: Full=Coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; AltName: Full=Protein LESION INITIATION 2; Flags: Precursor gi|9280667|gb|AAF86536.1|AC002560_29 F21B7.10 [Arabidopsis thaliana] gi|14624992|dbj|BAB61876.1| coproporphyrinogen III oxidase [Arabidopsis thaliana] gi|17221413|emb|CAD12661.1| coproporphyrinogen III oxidase [Arabidopsis thaliana] gi|332189456|gb|AEE27577.1| Coproporphyrinogen III oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357495593|ref|XP_003618085.1| Coproporphyrinogen-III oxidase [Medicago truncatula] gi|355519420|gb|AET01044.1| Coproporphyrinogen-III oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449459988|ref|XP_004147728.1| PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
UNIPROTKB|P35055385 CPX "Coproporphyrinogen-III ox 0.956 0.981 0.745 3.8e-156
TAIR|locus:2825062386 LIN2 "LESION INITIATION 2" [Ar 0.974 0.997 0.728 4e-154
UNIPROTKB|Q42946397 CPX "Coproporphyrinogen-III ox 0.977 0.972 0.721 7.4e-153
UNIPROTKB|Q7XPL2399 CPX "Coproporphyrinogen-III ox 0.858 0.849 0.737 6.1e-142
UNIPROTKB|Q42840391 CPX "Coproporphyrinogen-III ox 0.848 0.856 0.707 2.3e-133
FB|FBgn0021944390 Coprox "Coproporphyrinogen oxi 0.810 0.820 0.524 4.3e-93
ZFIN|ZDB-GENE-030131-9884449 cpox "coproporphyrinogen oxida 0.756 0.665 0.557 1.7e-91
UNIPROTKB|P36551454 CPOX "Coproporphyrinogen-III o 0.767 0.667 0.532 3.1e-90
RGD|1311817443 Cpox "coproporphyrinogen oxida 0.767 0.683 0.532 5.9e-89
UNIPROTKB|F1NR99357 CPOX "Uncharacterized protein" 0.762 0.843 0.533 7.5e-89
UNIPROTKB|P35055 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Glycine max (taxid:3847)] Back     alignment and assigned GO terms
 Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
 Identities = 290/389 (74%), Positives = 309/389 (79%)

Query:     7 VSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKXXXXX 66
             VSA S    FR  S+ ST    T T I +  R +   P+  M    +RA VSIEK     
Sbjct:     8 VSAPSYAFPFRSGSA-ST----TPTAISLTKRSWKPPPS--MAKGPVRATVSIEKETPEA 60

Query:    67 XXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG 126
                  FLR  D+ +        VRARFEKMIR+AQD+VC A+E  DGG +FKEDVWSRPG
Sbjct:    61 NRPETFLRGVDEAQSSTS----VRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPG 116

Query:   127 GGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVL 186
             GGGGISRVLQDGA+WEKAGVNVSVVYGVMPP+         +D+KPGP+PFFAAGISSVL
Sbjct:   117 GGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVL 176

Query:   187 HPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSA 246
             HPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTPAYIFEEDVKHFHS QK A
Sbjct:   177 HPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQA 236

Query:   247 CDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIP 306
             CDKF+PTFYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLLSFATECANSVIP
Sbjct:   237 CDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIP 296

Query:   307 AYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLT 366
             AY+PIIEKRKD PF D  KAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLT
Sbjct:   297 AYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLT 356

Query:   367 ARWEYDHNPKEGSEEWKLLDACINPKEWI 395
             ARWEYDH P+EGSEEWKLLDACINPKEWI
Sbjct:   357 ARWEYDHKPEEGSEEWKLLDACINPKEWI 385
GO:0042803 "protein homodimerization activity" evidence=ISS
TAIR|locus:2825062 LIN2 "LESION INITIATION 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q42946 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Nicotiana tabacum (taxid:4097)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPL2 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42840 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Hordeum vulgare (taxid:4513)] Back     alignment and assigned GO terms
FB|FBgn0021944 Coprox "Coproporphyrinogen oxidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9884 cpox "coproporphyrinogen oxidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P36551 CPOX "Coproporphyrinogen-III oxidase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311817 Cpox "coproporphyrinogen oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NR99 CPOX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XPL2HEM6_ORYSJ1, ., 3, ., 3, ., 30.81190.85820.8496yesno
P36551HEM6_HUMAN1, ., 3, ., 3, ., 30.55800.76700.6674yesno
P36552HEM6_MOUSE1, ., 3, ., 3, ., 30.54190.76700.6839yesno
Q9V3D2HEM6_DROME1, ., 3, ., 3, ., 30.55450.79490.8051yesno
Q42946HEM6_TOBAC1, ., 3, ., 3, ., 30.76780.97720.9722N/Ano
Q42840HEM6_HORVU1, ., 3, ., 3, ., 30.77680.84810.8567N/Ano
P35055HEM6_SOYBN1, ., 3, ., 3, ., 30.79490.97210.9974yesno
Q9LR75HEM6_ARATH1, ., 3, ., 3, ., 30.85790.88860.9093yesno
Q0VTD7HEM6_ALCBS1, ., 3, ., 3, ., 30.50660.73160.9569yesno
Q3B7D0HEM6_RAT1, ., 3, ., 3, ., 30.56120.76700.6839yesno
P11353HEM6_YEAST1, ., 3, ., 3, ., 30.51250.76700.9237yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.30.691
3rd Layer1.3.3.30.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037523001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00027816001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa)
•  • •• 0.996
GSVIVG00029410001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa)
•  • •• 0.995
GSVIVG00020543001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (504 aa)
•    •• 0.980
GSVIVG00028229001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (549 aa)
•  • •• 0.974
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
     •• 0.955
GSVIVG00015405001
RecName- Full=Delta-aminolevulinic acid dehydratase; EC=4.2.1.24; (430 aa)
•  •  • 0.925
GSVIVG00017986001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (411 aa)
•  •  • 0.910
GSVIVG00007090001
SubName- Full=Chromosome undetermined scaffold_183, whole genome shotgun sequence; (493 aa)
•  •  • 0.816
GSVIVG00032163001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (422 aa)
•  •  • 0.785
GSVIVG00005756001
RecName- Full=Glutamyl-tRNA reductase; EC=1.2.1.70; (532 aa)
•     • 0.778

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
PLN02873274 PLN02873, PLN02873, coproporphyrinogen-III oxidase 0.0
pfam01218296 pfam01218, Coprogen_oxidas, Coproporphyrinogen III 0.0
PRK05330300 PRK05330, PRK05330, coproporphyrinogen III oxidase 1e-160
COG0408303 COG0408, HemF, Coproporphyrinogen III oxidase [Coe 1e-146
>gnl|CDD|215471 PLN02873, PLN02873, coproporphyrinogen-III oxidase Back     alignment and domain information 
 Score =  563 bits (1454), Expect = 0.0
 Identities = 221/274 (80%), Positives = 241/274 (87%), Gaps = 3/274 (1%)

Query: 125 PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAA---SDEKPGPIPFFAAG 181
           PGGGGGISRVLQDG ++EKAGVNVSVVYG MPPEAYRAA         +  G +PFFAAG
Sbjct: 1   PGGGGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFFAAG 60

Query: 182 ISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHS 241
           +SSV+HPKNP APT HFNYRYFETDAPKD PGAPRQWWFGGGTDLTP+Y+FEEDVKHFH 
Sbjct: 61  LSSVMHPKNPMAPTFHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPSYLFEEDVKHFHG 120

Query: 242 TQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECA 301
           T K  CDK DP FYPRFKKWCDDYFYIKHRGERRGLGG+FFDDLND DQE LL+FAT+ A
Sbjct: 121 TYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDRDQEDLLAFATDVA 180

Query: 302 NSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV 361
           NSV+PAY+PI+EKRKD PFT++ KAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV
Sbjct: 181 NSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV 240

Query: 362 SLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
           SLP TARWEYDH P+EGSEE +LLDA  NP+EW+
Sbjct: 241 SLPPTARWEYDHQPEEGSEEAELLDALRNPREWV 274

Length = 274
>gnl|CDD|216370 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase Back     alignment and domain information
>gnl|CDD|235413 PRK05330, PRK05330, coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>gnl|CDD|223485 COG0408, HemF, Coproporphyrinogen III oxidase [Coenzyme metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG1518382 consensus Coproporphyrinogen III oxidase CPO/HEM13 100.0
PRK05330300 coproporphyrinogen III oxidase; Provisional 100.0
PF01218296 Coprogen_oxidas: Coproporphyrinogen III oxidase; I 100.0
COG0408303 HemF Coproporphyrinogen III oxidase [Coenzyme meta 100.0
PLN02873274 coproporphyrinogen-III oxidase 100.0
>KOG1518 consensus Coproporphyrinogen III oxidase CPO/HEM13 [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-149  Score=1078.32  Aligned_cols=376  Identities=62%  Similarity=1.068  Sum_probs=343.3

Q ss_pred             cccccceeeecCcc---cccccCCCccccccCccccCCCCCCccceeeeeccccccCCCCCCCCCcccccCCCccCCCCC
Q 016102            9 ASSSFTLFRVPSSW---STKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSS   85 (395)
Q Consensus         9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   85 (395)
                      |+||++|..++.-+   ++++.-+++. +   .-+++ .-+.+++++.++++ |+++++..+.|-++++..+ ...+..+
T Consensus         2 ~rh~~~l~s~gtfq~~~~~rg~~srg~-~---lgtgl-~~~~~~~~ah~~~a-i~pkv~gt~~~fm~~~~sD-~~~l~~~   74 (382)
T KOG1518|consen    2 ARHSSTLLSSGTFQPFSSHRGHYSRGS-T---LGTGL-PIRNKPNLAHRCSA-IEPKVPGTERPFMAPPDSD-DVTLPSS   74 (382)
T ss_pred             CccccCCcCCCcccccccccCCCCCCc-c---cccCc-ccccccchhhhhhh-hcCCCCCcccccccCCCCC-cccCCCC
Confidence            56788887776655   5566555552 1   12333 33345667777775 9999999999988877664 3446667


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHhcc
Q 016102           86 ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKA  165 (395)
Q Consensus        86 ~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~  165 (395)
                      +.+||++||.+|++.|++||++||++|++.+|.+|.|+|++||||||||||||+||||||||||+|||.|||+|+++|++
T Consensus        75 ~~~ir~~mE~lI~~~Qaevc~aleaidgg~kF~~D~W~r~eGGgGiscVlQDG~vFEKaGVnvSVV~G~l~p~Av~~mra  154 (382)
T KOG1518|consen   75 SSSIRAQMETLIREAQAEVCQALEAIDGGQKFKVDRWTRGEGGGGISCVLQDGNVFEKAGVNVSVVYGVLPPEAVQAMRA  154 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeecCCCCCceEEEEccCCeeecCCceEEEEeccCCHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC-CCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHH
Q 016102          166 AASDEKP-GPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQK  244 (395)
Q Consensus       166 ~~~~~~~-~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeD~~hFH~~lK  244 (395)
                      ++++.+. ++.||||+|||+||||+||||||+|+||||||++   +.+|. ++||||||+||||+|++|||++|||+++|
T Consensus       155 ~~k~lk~~~~lpFfA~GvS~ViHP~NPhaPT~HfNYRYFE~~---~~dg~-kqWWFGGG~DlTPsyl~eeD~~hFH~~~K  230 (382)
T KOG1518|consen  155 RHKNLKPTGPLPFFAAGVSSVIHPKNPHAPTTHFNYRYFETE---NADGV-KQWWFGGGADLTPSYLFEEDGKHFHQLHK  230 (382)
T ss_pred             cccCCCCCCCCceeeccceeeeccCCCCCCceeeeeeEEEEe---cCCCc-EEEEecCCccCChhhhhhhhHHHHHHHHH
Confidence            9986544 7899999999999999999999999999999994   44565 89999999999999999999999999999


Q ss_pred             HhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHH
Q 016102          245 SACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQH  324 (395)
Q Consensus       245 ~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~e  324 (395)
                      +|||+||+++||+||||||+||||+||+|.|||||||||||++.|+|+.|+|+++|+++|+|+|+|||+|||+++||++|
T Consensus       231 ~AcD~hdp~~YPrFKKWcDdYF~IkHR~E~RGiGGIFFDDld~~d~ee~f~fv~~Ca~avvPsYipiv~krkdmeft~~e  310 (382)
T KOG1518|consen  231 EACDKHDPTFYPRFKKWCDDYFYIKHRKERRGIGGIFFDDLDEPDPEELFSFVTDCARAVVPSYIPIVEKRKDMEFTEQE  310 (382)
T ss_pred             HHhhccCCccchhHHhhhhhheeeeeccccccccceecccCCCCCHHHHHHHHHHHHHhhccccchhhhhhcCCCcChhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccceeeeeeeeeccccccccC-CCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 016102          325 KAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI  395 (395)
Q Consensus       325 r~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~PrdWv  395 (395)
                      |+||+|||||||||||+|||||+|||+| |.||||||||||++|+|+|+|+|.+||+|++||+|+++|||||
T Consensus       311 k~wQ~lRRGrYvEFNliYDRGT~FGL~tpgsRiESILmsLPlha~w~y~h~P~~~sre~~ll~V~~~P~eWv  382 (382)
T KOG1518|consen  311 KQWQQLRRGRYVEFNLIYDRGTKFGLKTPGSRIESILMSLPLHASWEYMHEPKQGSREAKLLEVTHTPREWV  382 (382)
T ss_pred             HHHHHHhccceEEEEEEEecCceeeccCCcchhHhHhhcccchhhhhhhcCCCCcchhhHHHHhhcCCcccC
Confidence            9999999999999999999999999999 6699999999999999999999999999999999999999997

>PRK05330 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i Back     alignment and domain information
>COG0408 HemF Coproporphyrinogen III oxidase [Coenzyme metabolism] Back     alignment and domain information
>PLN02873 coproporphyrinogen-III oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2aex_A346 The 1.58a Crystal Structure Of Human Coproporphyrin 1e-95
1tkl_A326 Yeast Oxygen-Dependent Coproporphyrinogen Oxidase L 7e-85
1txn_A328 Crystal Structure Of Coproporphyrinogen Iii Oxidase 8e-84
3ejo_A310 Coproporphyrinogen Iii Oxidase From Leishmania Dono 2e-67
3dwr_A309 Leishmania Major Coproporphyrinogen Iii Oxidase Wit 4e-67
3e8j_A306 Coproporphyrinogen Iii Oxidase From Leishmania Naif 7e-67
1vju_A309 Coproporphyrinogen Iii Oxidase From Leishmania Majo 3e-66
1tk1_A260 Yeast Oxygen-Dependent Coproporphyrinogen Oxidase L 3e-61
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen Oxidase Reveals The Structural Basis Of Hereditary Coproporphyria Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  346 bits (887), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 164/310 (52%), Positives = 208/310 (67%), Gaps = 7/310 (2%)
Query: 89  VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNV 148
           ++ + E +I + Q  VCQA+ + DGG  F  D W R  GGGGIS VLQDG ++EKAGV++
Sbjct: 40  MKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSI 99
Query: 149 SVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206
           SVV+G +  E              K G +PF A G+SSV+HPKNP APT+HFNYRYFE +
Sbjct: 100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE 159
Query: 207 APKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYF 266
                    +QWWFGGG DLTP Y+ +ED  HFH T K ACD+  P  YP+FKKWCDDYF
Sbjct: 160 EADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYF 215
Query: 267 YIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326
           +I H          FFDDL+   +E +  F   CA +V+P+YIP+++K  D  FT Q K 
Sbjct: 216 FIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKL 275
Query: 327 WQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLL 385
           WQQLRRGRYVEFNL+YDRGT FGL T G RIESIL+SLPLTARWEY H+P E S+E ++L
Sbjct: 276 WQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEIL 335
Query: 386 DACINPKEWI 395
           +   +P++W+
Sbjct: 336 EVLRHPRDWV 345
>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase Length = 326 Back     alignment and structure
>pdb|1TXN|A Chain A, Crystal Structure Of Coproporphyrinogen Iii Oxidase Length = 328 Back     alignment and structure
>pdb|3EJO|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Donovani Length = 310 Back     alignment and structure
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound Ligand Length = 309 Back     alignment and structure
>pdb|3E8J|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi Length = 306 Back     alignment and structure
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major Length = 309 Back     alignment and structure
>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase Length = 260 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2aex_A346 Coproporphyrinogen III oxidase, mitochondrial; FLA 0.0
1vju_A309 Coproporphyrinogen III oxidase; structural genomic 0.0
1txn_A328 Coproporphyrinogen III oxidase; structural genomic 0.0
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} Length = 346 Back     alignment and structure
 Score =  563 bits (1452), Expect = 0.0
 Identities = 178/346 (51%), Positives = 229/346 (66%), Gaps = 8/346 (2%)

Query: 54  RAAVSIEKETPETERPPTFLRESD-DKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTD 112
                 E+E     R  +F+     D          ++ + E +I + Q  VCQA+ + D
Sbjct: 4   SLGRPEEEEDELAHRCSSFMAPPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVD 63

Query: 113 GGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKP 172
           GG  F  D W R  GGGGIS VLQDG ++EKAGV++SVV+G +  EA +  ++     K 
Sbjct: 64  GGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKT 123

Query: 173 --GPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY 230
             G +PF A G+SSV+HPKNP APT+HFNYRYFE +          QWWFGGG DLTP Y
Sbjct: 124 KDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNK----QWWFGGGCDLTPTY 179

Query: 231 IFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQ 290
           + +ED  HFH T K ACD+  P  YP+FKKWCDDYF+I HRGERRG+GG+FFDDL+   +
Sbjct: 180 LNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSK 239

Query: 291 EMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGL 350
           E +  F   CA +V+P+YIP+++K  D  FT Q K WQQLRRGRYVEFNL+YDRGT FGL
Sbjct: 240 EEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGL 299

Query: 351 KT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
            T G RIESIL+SLPLTARWEY H+P E S+E ++L+   +P++W+
Sbjct: 300 FTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWV 345
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A* Length = 309 Back     alignment and structure
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A Length = 328 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
1txn_A328 Coproporphyrinogen III oxidase; structural genomic 100.0
2aex_A346 Coproporphyrinogen III oxidase, mitochondrial; FLA 100.0
1vju_A309 Coproporphyrinogen III oxidase; structural genomic 100.0
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A Back     alignment and structure
Probab=100.00  E-value=1.4e-152  Score=1112.17  Aligned_cols=311  Identities=52%  Similarity=1.022  Sum_probs=241.4

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeeccccc-CCCCCceEEEeeCCceEEeeeeEEEEeeccCCHHH
Q 016102           81 SSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSR-PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEA  159 (395)
Q Consensus        81 ~~~~~~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R-~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a  159 (395)
                      +.++++++||++|++||+.||++||++||++|+ ++|++|.|+| ++||||+||||+||+||||||||||+|||+++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg-~~F~~d~W~R~~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~   82 (328)
T 1txn_A            4 PQDPRNLPIRQQMEALIRRKQAEITQGLESIDT-VKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAA   82 (328)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSS-SCCEECCCCCSCCCSSSCEEEEESCSSEEEEEEEEEEEEEEECHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEecceecCCCCCCeEEEEeCCcEEEecceEEEEEeccCCHHH
Confidence            345567789999999999999999999999996 8999999999 99999999999999999999999999999999999


Q ss_pred             HHHhccccCCC-C----------CCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCC
Q 016102          160 YRAAKAAASDE-K----------PGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTP  228 (395)
Q Consensus       160 ~~~~~~~~~~~-~----------~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP  228 (395)
                      +++|+++++.. .          ..+.+|+||||||||||+||||||||||||||+++   +++|...+||||||+||||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~---~~~g~~~~wWFGGG~DLTP  159 (328)
T 1txn_A           83 VSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETW---NQDGTPQTWWFGGGADLTP  159 (328)
T ss_dssp             HHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE---CTTSSEEEEEEEEEEEEEC
T ss_pred             HHhhcccccccccccccccccccCCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEEe---cCCCCccceeecCCccCCC
Confidence            99998865533 2          45789999999999999999999999999999994   3557667899999999999


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhc
Q 016102          229 AYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAY  308 (395)
Q Consensus       229 ~Y~~eeD~~hFH~~lK~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY  308 (395)
                      +|+++||++|||+++|++||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||+||
T Consensus       160 ~y~~~eD~~hFH~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~~~~e~~faf~~~vg~afl~aY  239 (328)
T 1txn_A          160 SYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSY  239 (328)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHcccceeeeeeeeeccccccccC-CCceeeEeecCCCCccccccCCCCCCCHHHHHHHH
Q 016102          309 IPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDA  387 (395)
Q Consensus       309 ~pIv~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~  387 (395)
                      +|||+||+++|||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+|+|+|+|++||+|++|+++
T Consensus       240 ~pIv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~tpggr~ESILmSLPp~a~W~Y~~~pe~gS~Ea~l~~~  319 (328)
T 1txn_A          240 LTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHPAPGSREAKLLEV  319 (328)
T ss_dssp             HHHHHTTTTSCCCHHHHHHHHHHHTHHHHHC-------------------------------------------------
T ss_pred             HHHHHHhCCCCCCHHHHHHHHhcccceEEEEeeeecCchhhCCCCCCCceeeeecCCCCCccccCCCCCCcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hcCCCCCC
Q 016102          388 CINPKEWI  395 (395)
Q Consensus       388 l~~PrdWv  395 (395)
                      |++|||||
T Consensus       320 ~~~prdW~  327 (328)
T 1txn_A          320 TTKPREWV  327 (328)
T ss_dssp             --------
T ss_pred             hcCcccCC
Confidence            99999997
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} Back     alignment and structure
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d1tkla_325 d.248.1.1 (A:) Coproporphyrinogen III oxidase {Bak 1e-115
d1vjua_302 d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Le 1e-114
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Coproporphyrinogen III oxidase
superfamily: Coproporphyrinogen III oxidase
family: Coproporphyrinogen III oxidase
domain: Coproporphyrinogen III oxidase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  338 bits (867), Expect = e-115
 Identities = 161/327 (49%), Positives = 209/327 (63%), Gaps = 17/327 (5%)

Query: 82  SSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRP-GGGGGISRVLQDGAI 140
                  +R + E +IR  Q  + Q +E  D   KF  D W+R   GGGG S V+QDG  
Sbjct: 2   QDPRNLPIRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTT 60

Query: 141 WEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPI-----------PFFAAGISSVLHPK 189
           +EK GVNVSVVYG + P A  A KA   + +                FFA G+S V+HP 
Sbjct: 61  FEKGGVNVSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPV 120

Query: 190 NPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDK 249
           NP APT H NYRYFET    +  G P+ WWFGGG DLTP+Y++EED + FH   K A DK
Sbjct: 121 NPHAPTTHLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDK 177

Query: 250 FDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYI 309
            D   YPRFKKWCD+YFYI HR E RG+GG+FFDD ++ D + +L    +C ++ +P+Y+
Sbjct: 178 HDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYL 237

Query: 310 PIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTAR 368
            I+++RKD P+T + + WQ +RRGRYVEFNL+YDRGT FGL+T G R+ESIL+SLP  A 
Sbjct: 238 TIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHAS 297

Query: 369 WEYDHNPKEGSEEWKLLDACINPKEWI 395
           W Y+H+P  GS E KLL+    P+EW+
Sbjct: 298 WLYNHHPAPGSREAKLLEVTTKPREWV 324
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]} Length = 302 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1tkla_325 Coproporphyrinogen III oxidase {Baker's yeast (Sac 100.0
d1vjua_302 Hypothetical protein Lmaj006828 {Leishmania major 100.0
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Coproporphyrinogen III oxidase
superfamily: Coproporphyrinogen III oxidase
family: Coproporphyrinogen III oxidase
domain: Coproporphyrinogen III oxidase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-144  Score=1057.47  Aligned_cols=307  Identities=52%  Similarity=1.035  Sum_probs=293.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccC-CCCCceEEEeeCCceEEeeeeEEEEeeccCCHHHHHHh
Q 016102           85 SASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRP-GGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAA  163 (395)
Q Consensus        85 ~~~~~r~~~e~~~~~lQ~~I~~~lE~ld~~~~F~~d~W~R~-~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~  163 (395)
                      ...+||++|++||++||++||++||++| +++|.+|.|+|+ +||||+||||+||+||||||||||+|+|+++|+++++|
T Consensus         5 ~~~~mr~~~e~~~~~lQ~~Ic~~lE~ld-~~~F~~d~W~R~~~gGGG~s~vl~~G~VfEKaGVN~S~V~G~~~p~~a~~~   83 (325)
T d1tkla_           5 RNLPIRQQMEALIRRKQAEITQGLESID-TVKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSAM   83 (325)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHTTS-SSCCEEEEEECGGGCEEEEEEEEESCSSEEEEEEEEEEEEEEECHHHHTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhc-CCCceeeccccCCCCCCceEEEEcCCcEEEeeeEEEEEEEeecCHHHHHhh
Confidence            3557999999999999999999999999 578999999995 78999999999999999999999999999999999999


Q ss_pred             ccccCCC-----------CCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCC
Q 016102          164 KAAASDE-----------KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF  232 (395)
Q Consensus       164 ~~~~~~~-----------~~~~~~F~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~  232 (395)
                      +++++..           ...+.+|+||||||||||+||+|||+|||||||++   .+++|.+..||||||+||||+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~f~AtGiSlViHP~NP~vPt~H~N~R~f~~---~~~~~~~~~wWFGGG~DLTP~y~~  160 (325)
T d1tkla_          84 KADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLY  160 (325)
T ss_dssp             GGGCTTCCCCCCSSSSCCCSSCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEE---ECTTSCEEEEEEEEEEEEECSSCC
T ss_pred             hcccccccCcccccccCccccCCceeEeeeeeehcccCCCcchhcccceEEEE---ecCCCCcceeEEeeeecccccccc
Confidence            9876531           12456899999999999999999999999999999   577787789999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCCcceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHH
Q 016102          233 EEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPII  312 (395)
Q Consensus       233 eeD~~hFH~~lK~~CD~~~~~~Y~~fK~wCDeYFyIpHR~E~RGVGGIFFDdln~~~~e~~faF~~~vg~afl~aY~pIv  312 (395)
                      +||++|||+++|++||+||+++|++||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||++|+|||
T Consensus       161 ~eD~~~fH~~lK~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFfD~l~~~~~e~~f~f~~~vg~~fl~~Y~~Iv  240 (325)
T d1tkla_         161 EEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIV  240 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSCCEEEEEEECSSCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcccccccccccchhhhhhhhcccchHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHcccceeeeeeeeeccccccccC-CCceeeEeecCCCCccccccCCCCCCCHHHHHHHHhcCC
Q 016102          313 EKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINP  391 (395)
Q Consensus       313 ~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggriESILmSLPp~a~W~Y~~~P~~gs~Ea~l~~~l~~P  391 (395)
                      +||++++||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+|+|+++|++||+|++|+++|++|
T Consensus       241 ~kr~~~~~t~~~r~~Ql~rRGRYvEFNLlyDRGT~FGL~t~G~r~esILmSlPp~a~W~y~~~~~~~s~e~~l~~~l~~p  320 (325)
T d1tkla_         241 KRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHPAPGSREAKLLEVTTKP  320 (325)
T ss_dssp             HTTTTSCCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHSTTCCHHHHGGGSCSEEECCTTCCCCTTSHHHHHHHHHHSC
T ss_pred             HHhccccccHHHHHHHHHhCCceEEEEEEeecCceeeeecCCCCceeEEecCCCCCeeeccCCCCCCCHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999 779999999999999999999999999999999999999


Q ss_pred             CCCC
Q 016102          392 KEWI  395 (395)
Q Consensus       392 rdWv  395 (395)
                      ||||
T Consensus       321 ~~W~  324 (325)
T d1tkla_         321 REWV  324 (325)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9997
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure