Citrus Sinensis ID: 016128
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | 2.2.26 [Sep-21-2011] | |||||||
| Q1PFA6 | 613 | Pentatricopeptide repeat- | yes | no | 0.883 | 0.567 | 0.630 | 1e-144 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.954 | 0.539 | 0.388 | 2e-74 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.946 | 0.698 | 0.393 | 4e-74 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.873 | 0.547 | 0.392 | 1e-73 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.784 | 0.395 | 0.433 | 8e-71 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.964 | 0.553 | 0.359 | 3e-70 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.961 | 0.498 | 0.365 | 9e-70 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.946 | 0.505 | 0.371 | 6e-69 | |
| Q9FFG8 | 657 | Pentatricopeptide repeat- | no | no | 0.972 | 0.582 | 0.355 | 2e-66 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.951 | 0.545 | 0.339 | 4e-66 |
| >sp|Q1PFA6|PP144_ARATH Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/390 (63%), Positives = 310/390 (79%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q +TM+GTAL+DMY KC
Sbjct: 221 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCR 280
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A+ VF ELK +RN+++WN++I+GMM+NG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 281 CWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLI 340
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 341 SGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG SWARR FD+FE KP DP FWN MISGYG++GE ESA+EIF+
Sbjct: 401 RDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFE 460
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++EKV+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCM+DLLGRS
Sbjct: 461 LLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRS 520
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I ++ EP+ SVY SLLG+C HL+ LGEE AMKL E+EPENP PFVILS+
Sbjct: 521 GRLREAKEVIDQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSS 580
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 581 IYAALERWEDVESIRQVIDQKQLVKLPGLS 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 231/391 (59%), Gaps = 15/391 (3%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEK-QSDTMIGTALVDMYLKCGCLPCAH 66
EP+ VT SVISACASL ++ G++VHG +K +K ++D ++ A VDMY KC + A
Sbjct: 250 EPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEAR 309
Query: 67 NVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126
+F + RN++ +MI+G + ++ A +F +A + +WN++I+G++Q
Sbjct: 310 FIFDSMP-IRNVIAETSMISGYAMAASTKAARLMFTKMAER----NVVSWNALIAGYTQN 364
Query: 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN------ 180
G EA LF ++ + P+ ++L ACADL+ L LG + H HV++
Sbjct: 365 GENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEE 424
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
D + +LI MY+KCG F + + D WNAMI G+ +NG A+E+F
Sbjct: 425 DDIFVGNSLIDMYVKCGCVEEGYLVFRK--MMERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
M + KP+ + + VLSACGHAG V++ F+ M DFG+ P ++H+ CMVDLLGR+
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRA 542
Query: 301 GRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359
G L+EA+ +I E+P +P ++ SLL AC H N LG+ +A KL E+EP N P+V+LS
Sbjct: 543 GFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLS 602
Query: 360 NIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
N+YA LG+WEDV +R+ + +TK PG S
Sbjct: 603 NMYAELGKWEDVMNVRKSMRKEGVTKQPGCS 633
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 222/381 (58%), Gaps = 8/381 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ TF + +CASL G+QVHG K + + AL+DMY+K L AH V
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E+ R++++WN++++G G+ +KA +GL H +W +MISG++ +G
Sbjct: 167 FDEMY-ERDVISWNSLLSGYARLGQMKKA----KGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA F +MQ G+ P + SVL +CA L +L+LGK H + R K + A
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNA 281
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG S A + F Q E K D W+ MISGY +G A+E F+ MQ+ KVK
Sbjct: 282 LIEMYSKCGVISQAIQLFGQMEGK--DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVK 339
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
PN +F+ +LSAC H G + L+ F MM D+ ++PK EH+GC++D+L R+G+L+ A E
Sbjct: 340 PNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVE 399
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
+ + +P +P ++ SLL +C N D+ L E+EPE+ +V+L+NIYA LG+
Sbjct: 400 ITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGK 459
Query: 368 WEDVGRIRQMINDRQLTKLPG 388
WEDV R+R+MI + + K PG
Sbjct: 460 WEDVSRLRKMIRNENMKKTPG 480
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 223/387 (57%), Gaps = 43/387 (11%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
+PN TF +V+++C L G+Q+HGL +K S +G++L+DMY K G +
Sbjct: 150 KPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQI----- 204
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127
++A E+FE L D + ++I+G++QLG
Sbjct: 205 ---------------------------KEAREIFECLPER----DVVSCTAIIAGYAQLG 233
Query: 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187
+ EA ++F ++ S GM P+ S+L+A + L+ L GK+ H HV+R +L +
Sbjct: 234 LDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQN 293
Query: 188 ALISMYMKCGQPSWARRFFDQFEIKPDDPAF-WNAMISGYGRNGEYESAVEIFDLMQQEK 246
+LI MY KCG S+ARR FD P+ A WNAM+ GY ++G +E+F LM+ EK
Sbjct: 294 SLIDMYSKCGNLSYARRLFDNM---PERTAISWNAMLVGYSKHGLGREVLELFRLMRDEK 350
Query: 247 -VKPNSASFVAVLSACGHAGHVDKALQIFT-MMDDDFGLKPKQEHFGCMVDLLGRSGRLD 304
VKP++ + +AVLS C H D L IF M+ ++G KP EH+GC+VD+LGR+GR+D
Sbjct: 351 RVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRID 410
Query: 305 EARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363
EA E I+ +P +PT V SLLGAC HL+ D+GE + +L E+EPEN +VILSN+YA
Sbjct: 411 EAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYA 470
Query: 364 GLGRWEDVGRIRQMINDRQLTKLPGIS 390
GRW DV +R M+ + +TK PG S
Sbjct: 471 SAGRWADVNNVRAMMMQKAVTKEPGRS 497
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 137/316 (43%), Positives = 195/316 (61%), Gaps = 7/316 (2%)
Query: 76 RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL 135
RN+ TWNTMI G G+ +A LF+ + K DP +W +MI+G+SQ G FEA +L
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMP----KRDPVSWAAMIAGYSQSGHSFEALRL 396
Query: 136 FEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK 195
F +M+ G + +S LS CAD+ AL+LGK+ HG +++ + AL+ MY K
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456
Query: 196 CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255
CG A F E+ D WN MI+GY R+G E A+ F+ M++E +KP+ A+ V
Sbjct: 457 CGSIEEANDLFK--EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMV 514
Query: 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP- 314
AVLSAC H G VDK Q F M D+G+ P +H+ CMVDLLGR+G L++A L++ +P
Sbjct: 515 AVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPF 574
Query: 315 EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRI 374
EP +++ +LLGA H N++L E A K+ MEPEN +V+LSN+YA GRW DVG++
Sbjct: 575 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 634
Query: 375 RQMINDRQLTKLPGIS 390
R + D+ + K+PG S
Sbjct: 635 RVRMRDKGVKKVPGYS 650
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 218/417 (52%), Gaps = 37/417 (8%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
P+ TF V+ AC+ + GR++HG K+ S +G LV MY KCG L A
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 68 VFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPAT------------ 115
V E+ R++++WN+++ G N R + A+E+ + D T
Sbjct: 197 VLDEM-SRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTT 255
Query: 116 ---------------------WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154
WN MI + + M EA +L+ +M++ G P +TSV
Sbjct: 256 TENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSV 315
Query: 155 LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD 214
L AC D SAL LGK+ HG++ R L + + ALI MY KCG AR F+ +K
Sbjct: 316 LPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFEN--MKSR 373
Query: 215 DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274
D W AMIS YG +G AV +F +Q + P+S +FV L+AC HAG +++ F
Sbjct: 374 DVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCF 433
Query: 275 TMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLN 333
+M D + + P+ EH CMVDLLGR+G++ EA I+++ EP V+ +LLGAC H +
Sbjct: 434 KLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSD 493
Query: 334 SDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+D+G A KL ++ PE +V+LSNIYA GRWE+V IR ++ + L K PG S
Sbjct: 494 TDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGAS 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 225/383 (58%), Gaps = 4/383 (1%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ VT SV+ + L GR +HG +K D + +A++DMY K G + ++
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISL 309
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + + + N I G+ NG +KA+E+FE + + + +W S+I+G +Q G
Sbjct: 310 FNQFEMMEAGVC-NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA +LF +MQ G+ P+ + S+L AC +++AL G+ THG +R L + + +A
Sbjct: 369 DIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSA 428
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG+ + ++ F+ K + WN++++G+ +G+ + + IF+ + + ++K
Sbjct: 429 LIDMYAKCGRINLSQIVFNMMPTK--NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLK 486
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ SF ++LSACG G D+ + F MM +++G+KP+ EH+ CMV+LLGR+G+L EA +
Sbjct: 487 PDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYD 546
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
LI+E+P EP V+ +LL +C N DL E A KL +EPENP +V+LSNIYA G
Sbjct: 547 LIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGM 606
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W +V IR + L K PG S
Sbjct: 607 WTEVDSIRNKMESLGLKKNPGCS 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 218/382 (57%), Gaps = 9/382 (2%)
Query: 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQE 71
VT + V+SACA + L+FGRQV + + + A++DMY KCG + A +F
Sbjct: 233 VTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 292
Query: 72 LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE 131
++ N+ TW TM+ G ++ E A E+ + + D WN++IS + Q G E
Sbjct: 293 MEEKDNV-TWTTMLDGYAISEDYEAAREVLNSMPQK----DIVAWNALISAYEQNGKPNE 347
Query: 132 AFKLFEKMQ-STGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALI 190
A +F ++Q M + + S LSACA + AL+LG+ H ++ + + + + +ALI
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 191 SMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN 250
MY KCG +R F+ E + D W+AMI G +G AV++F MQ+ VKPN
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKR--DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPN 465
Query: 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310
+F V AC H G VD+A +F M+ ++G+ P+++H+ C+VD+LGRSG L++A + I
Sbjct: 466 GVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI 525
Query: 311 RELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369
+P P+ SV+ +LLGAC H N +L E +L E+EP N V+LSNIYA LG+WE
Sbjct: 526 EAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWE 585
Query: 370 DVGRIRQMINDRQLTKLPGISA 391
+V +R+ + L K PG S+
Sbjct: 586 NVSELRKHMRVTGLKKEPGCSS 607
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 218/397 (54%), Gaps = 14/397 (3%)
Query: 1 MKECLSDE---PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYL 57
M C+ E P S TF +++ AC ++ L GRQ H T ++ +G ++DMY+
Sbjct: 136 MYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYV 195
Query: 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWN 117
KC + CA VF E+ R++++W +IA G E A ELFE L + D W
Sbjct: 196 KCESIDCARKVFDEMP-ERDVISWTELIAAYARVGNMECAAELFESLPTK----DMVAWT 250
Query: 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177
+M++GF+Q EA + F++M+ +G+ V +SACA L A K ++
Sbjct: 251 AMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKS 310
Query: 178 DLNKDES--MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESA 235
+ + + +ALI MY KCG A F + + +++MI G +G + A
Sbjct: 311 GYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEA 368
Query: 236 VEIFDLM-QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
+ +F M Q ++KPN+ +FV L AC H+G VD+ Q+F M FG++P ++H+ CMV
Sbjct: 369 LHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMV 428
Query: 295 DLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353
DLLGR+GRL EA ELI+ + EP V+ +LLGAC H N ++ E A L E+EP+
Sbjct: 429 DLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIG 488
Query: 354 PFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+++LSN+YA G W V R+R++I ++ L K P +S
Sbjct: 489 NYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVS 525
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 219/383 (57%), Gaps = 8/383 (2%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P SVT + V+SAC+ + ++VH + + + + ALV+ Y CG + A +
Sbjct: 234 PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRI 293
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F+ +K +R++++W +++ G + G + A F+ + D +W MI G+ + G
Sbjct: 294 FRSMK-ARDVISWTSIVKGYVERGNLKLARTYFDQMPVR----DRISWTIMIDGYLRAGC 348
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
E+ ++F +MQS GM+P + SVL+ACA L +L++G+ ++ + + D + A
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG A++ F + + D W AM+ G NG+ + A+++F MQ ++
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQR--DKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ +++ VLSAC H+G VD+A + F M D ++P H+GCMVD+LGR+G + EA E
Sbjct: 467 PDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYE 526
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
++R++P P V+ +LLGA H + + E A K+ E+EP+N + +L NIYAG R
Sbjct: 527 ILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKR 586
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W+D+ +R+ I D + K PG S
Sbjct: 587 WKDLREVRRKIVDVAIKKTPGFS 609
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| 225424928 | 617 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.635 | 0.648 | 1e-152 | |
| 147791119 | 677 | hypothetical protein VITISV_029224 [Viti | 0.994 | 0.579 | 0.648 | 1e-152 | |
| 15227029 | 613 | pentatricopeptide repeat-containing prot | 0.883 | 0.567 | 0.630 | 1e-142 | |
| 91805385 | 613 | pentatricopeptide repeat-containing prot | 0.883 | 0.567 | 0.630 | 1e-142 | |
| 116830405 | 614 | unknown [Arabidopsis thaliana] | 0.883 | 0.566 | 0.630 | 1e-142 | |
| 356501914 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.620 | 0.623 | 1e-141 | |
| 297817888 | 611 | pentatricopeptide repeat-containing prot | 0.883 | 0.569 | 0.625 | 1e-140 | |
| 357486633 | 620 | Pentatricopeptide repeat-containing prot | 0.974 | 0.619 | 0.577 | 1e-131 | |
| 356497858 | 505 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.885 | 0.691 | 0.62 | 1e-120 | |
| 255558198 | 593 | pentatricopeptide repeat-containing prot | 0.558 | 0.370 | 0.609 | 8e-93 |
| >gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750 [Vitis vinifera] gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 255/393 (64%), Positives = 313/393 (79%), Gaps = 1/393 (0%)
Query: 3 ECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCL 62
E + PNSVT +S++SAC+ LLY++FGRQ+HGL +KIE DTM+GTALVDMY KCGC
Sbjct: 225 ESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCW 284
Query: 63 PCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122
A+ +F EL GSRN++TWN+MIAGMMLNG+S+ A+ELFE L EG +PD ATWN+MISG
Sbjct: 285 HWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISG 344
Query: 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD 182
FSQ G EAFK F KMQS G++ SLK +TS+L AC+ LSAL+ GKE HGH IR +++ D
Sbjct: 345 FSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTD 404
Query: 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242
E ++TALI MYMKCG ARR F QF+IKPDDPAFWNAMISGYGRNG+Y+SA EIF+ M
Sbjct: 405 EFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQM 464
Query: 243 QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302
Q+EKV+PNSA+ V++LS C H G +D+ Q+F MM+ D+GL P EHFGCMVDLLGRSGR
Sbjct: 465 QEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGR 524
Query: 303 LDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362
L EA+ELI E+PE +VSV+ SLLGAC H +S LGEEMA KL E+EP++PTPFVILSNIY
Sbjct: 525 LKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIY 584
Query: 363 AGLGRWEDVGRIRQMINDRQLTKLPGISA-GIT 394
A GRW DV R+R+M+NDR L K PG S+ G+T
Sbjct: 585 AVQGRWGDVERVREMMNDRGLKKPPGCSSIGVT 617
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 255/393 (64%), Positives = 313/393 (79%), Gaps = 1/393 (0%)
Query: 3 ECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCL 62
E + PNSVT +S++SAC+ LLY++FGRQ+HGL +KIE DTM+GTALVDMY KCGC
Sbjct: 285 ESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCW 344
Query: 63 PCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122
A+ +F EL GSRN++TWN+MIAGMMLNG+S+ A+ELFE L EG +PD ATWN+MISG
Sbjct: 345 HWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISG 404
Query: 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD 182
FSQ G EAFK F KMQS G++ SLK +TS+L AC+ LSAL+ GKE HGH IR +++ D
Sbjct: 405 FSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTD 464
Query: 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242
E ++TALI MYMKCG ARR F QF+IKPDDPAFWNAMISGYGRNG+Y+SA EIF+ M
Sbjct: 465 EFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQM 524
Query: 243 QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302
Q+EKV+PNSA+ V++LS C H G +D+ Q+F MM+ D+GL P EHFGCMVDLLGRSGR
Sbjct: 525 QEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGR 584
Query: 303 LDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362
L EA+ELI E+PE +VSV+ SLLGAC H +S LGEEMA KL E+EP++PTPFVILSNIY
Sbjct: 585 LKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIY 644
Query: 363 AGLGRWEDVGRIRQMINDRQLTKLPGISA-GIT 394
A GRW DV R+R+M+NDR L K PG S+ G+T
Sbjct: 645 AVQGRWGDVERVREMMNDRGLKKPPGCSSIGVT 677
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227029|ref|NP_178378.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546778|sp|Q1PFA6.2|PP144_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02750 gi|2947066|gb|AAC05347.1| hypothetical protein [Arabidopsis thaliana] gi|330250526|gb|AEC05620.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/390 (63%), Positives = 310/390 (79%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q +TM+GTAL+DMY KC
Sbjct: 221 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCR 280
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A+ VF ELK +RN+++WN++I+GMM+NG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 281 CWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLI 340
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 341 SGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG SWARR FD+FE KP DP FWN MISGYG++GE ESA+EIF+
Sbjct: 401 RDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFE 460
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++EKV+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCM+DLLGRS
Sbjct: 461 LLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRS 520
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I ++ EP+ SVY SLLG+C HL+ LGEE AMKL E+EPENP PFVILS+
Sbjct: 521 GRLREAKEVIDQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSS 580
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 581 IYAALERWEDVESIRQVIDQKQLVKLPGLS 610
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|91805385|gb|ABE65422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/390 (63%), Positives = 310/390 (79%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q +TM+GTAL+DMY KC
Sbjct: 221 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCR 280
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A+ VF ELK +RN+++WN++I+GMM+NG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 281 CWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLI 340
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 341 SGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG SWARR FD+FE KP DP FWN MISGYG++GE ESA+EIF+
Sbjct: 401 RDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPRDPVFWNVMISGYGKHGECESAIEIFE 460
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++EKV+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCM+DLLGRS
Sbjct: 461 LLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRS 520
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I ++ EP+ SVY SLLG+C HL+ LGEE AMKL E+EPENP PFVILS+
Sbjct: 521 GRLREAKEVIDQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSS 580
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 581 IYAALERWEDVESIRQVIDQKQLVKLPGLS 610
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116830405|gb|ABK28160.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 246/390 (63%), Positives = 310/390 (79%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q +TM+GTAL+DMY KC
Sbjct: 221 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCR 280
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A+ VF ELK +RN+++WN++I+GMM+NG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 281 CWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLI 340
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 341 SGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG SWARR FD+FE KP DP FWN MISGYG++GE ESA+EIF+
Sbjct: 401 RDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFE 460
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++EKV+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCM+DLLGRS
Sbjct: 461 LLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRS 520
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I ++ EP+ SVY SLLG+C HL+ LGEE AMKL E+EPENP PFVILS+
Sbjct: 521 GRLREAKEVIDQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSS 580
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 581 IYAALERWEDVESIRQVIDQKQLVKLPGLS 610
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501914|ref|XP_003519768.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/390 (62%), Positives = 302/390 (77%), Gaps = 1/390 (0%)
Query: 2 KECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC 61
+EC+ + NSVT +SV+SAC SL ++FGRQVHG+ +K+E M+ TALVDMY KCG
Sbjct: 233 EECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAGDGVMVMTALVDMYSKCGF 292
Query: 62 LPCAHNVFQELKGSR-NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
A VF ++G+R N++TWN+MIAGMMLN SE+A+++F+ L EG KPD ATWNSMI
Sbjct: 293 WRSAFEVFTGVEGNRRNLITWNSMIAGMMLNKESERAVDMFQRLESEGLKPDSATWNSMI 352
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGF+QLG EAFK F +MQS G+ P LK VTS+LSACAD S L+ GKE HG +R D+N
Sbjct: 353 SGFAQLGECGEAFKYFGQMQSVGVAPCLKIVTSLLSACADSSMLQHGKEIHGLSLRTDIN 412
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D+ + TAL+ MYMKCG SWAR FDQ++ KPDDPAFWNAMI GYGRNG+YESA EIFD
Sbjct: 413 RDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAFWNAMIGGYGRNGDYESAFEIFD 472
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
M +E V+PNSA+FV+VLSAC H G VD+ L F MM ++GL+PK EHFGC+VDLLGRS
Sbjct: 473 EMLEEMVRPNSATFVSVLSACSHTGQVDRGLHFFRMMRIEYGLQPKPEHFGCIVDLLGRS 532
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA++L+ EL EP SV+ SLLGAC C+L+S+LGEEMA KL ++EPENP P V+LSN
Sbjct: 533 GRLSEAQDLMEELAEPPASVFASLLGACRCYLDSNLGEEMAKKLLDVEPENPAPLVVLSN 592
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYAGLGRW++V RIR +I D+ L KL G S
Sbjct: 593 IYAGLGRWKEVERIRGVITDKGLDKLSGFS 622
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817888|ref|XP_002876827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322665|gb|EFH53086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/390 (62%), Positives = 306/390 (78%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q DTM+GTAL+DMY KC
Sbjct: 219 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKTEFQFDTMVGTALIDMYSKCR 278
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A++VF ELK +RN+++WN++I+GMMLNG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 279 CWKSAYSVFTELKDTRNLISWNSVISGMMLNGQHETAVELFEQLDSEGLKPDSATWNSLI 338
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 339 SGFSQLGKVVEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 398
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG ARR FD+FE KP DP FWN MISGYG++GE ESA+EIFD
Sbjct: 399 RDIFVLTSLIDMYMKCGFSLLARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFD 458
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++E+V+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCMVDLLGR
Sbjct: 459 LLREEEVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMVDLLGRF 518
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I + +P+ SVY SLLG+C HL+ LGEE AMKL E+EP NP PFVILS+
Sbjct: 519 GRLREAKEVIDRMSDPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPGNPAPFVILSS 578
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 579 IYAALERWEDVESIRQVIDQKQLVKLPGLS 608
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486633|ref|XP_003613604.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355514939|gb|AES96562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/386 (57%), Positives = 291/386 (75%), Gaps = 2/386 (0%)
Query: 5 LSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64
L ++PN VT +SV+SACA+L ++ G+QVHGL++K+E M+ T+LVDMY KCGC
Sbjct: 232 LEEKPNKVTLVSVVSACATLSNIRLGKQVHGLSMKLEACDHVMVVTSLVDMYSKCGCWGS 291
Query: 65 AHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
A +VF + RN++TWN+MIAGMM+N SE+A+ELFE + EG PD ATWNS+ISGF+
Sbjct: 292 AFDVFSRSE-KRNLITWNSMIAGMMMNSESERAVELFERMVDEGILPDSATWNSLISGFA 350
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
Q G+ EAFK F KMQ G+ P LK +TS+LS C D L+ K HG+ +R ++KD+
Sbjct: 351 QKGVCVEAFKYFSKMQCAGVAPCLKILTSLLSVCGDSCVLRSAKAIHGYALRICVDKDDF 410
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ATAL+ YMKCG S+AR FDQF++KPDDPAFWNAMI GYG NG+YESA E+F M
Sbjct: 411 LATALVDTYMKCGCVSFARFVFDQFDVKPDDPAFWNAMIGGYGTNGDYESAFEVFYEMLD 470
Query: 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLD 304
E V+PNSA+FV+VLSAC H+G +++ L+ F M+ +GL PK EHFGC+VDLLGR+G+L
Sbjct: 471 EMVQPNSATFVSVLSACSHSGQIERGLRFFRMI-RKYGLDPKPEHFGCVVDLLGRAGQLG 529
Query: 305 EARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364
EAR+L++EL EP SV+ SLLGAC C+L+S+LGEEMAMKL ++EP+NP P V+LSNIYA
Sbjct: 530 EARDLVQELAEPPASVFDSLLGACRCYLDSNLGEEMAMKLIDIEPKNPAPLVVLSNIYAA 589
Query: 365 LGRWEDVGRIRQMINDRQLTKLPGIS 390
LGRW +V RIR +I D+ L K GIS
Sbjct: 590 LGRWSEVERIRGLITDKGLDKNSGIS 615
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497858|ref|XP_003517773.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/350 (62%), Positives = 270/350 (77%), Gaps = 1/350 (0%)
Query: 42 KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR-NILTWNTMIAGMMLNGRSEKAMEL 100
K + TM GT+LVD+Y KCG A VF+ ++G+R N++TWN+MIA MMLN SE+A+++
Sbjct: 151 KSNRTMKGTSLVDLYSKCGFWHFAFEVFKGVEGNRRNLITWNSMIARMMLNKESERAVDM 210
Query: 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160
F+ L EG KPD ATWNSMISGF+QLG+ EAFK F +MQ G+ P LK VTS+LSA A+
Sbjct: 211 FQRLESEGLKPDSATWNSMISGFAQLGVCGEAFKYFREMQYVGVAPCLKIVTSLLSASAN 270
Query: 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWN 220
S L+ GKE HG +R D+N+D+ +ATAL+ +YMK G PSWAR FDQF+ KPDDPAFWN
Sbjct: 271 SSMLRRGKEIHGFALRTDINRDDLLATALVDIYMKSGHPSWARGVFDQFDAKPDDPAFWN 330
Query: 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280
AMI GYGRN +YESA EIFD M +E V+PN A+FV+ LSAC H G VD+ L F MM +
Sbjct: 331 AMIGGYGRNRDYESASEIFDEMLEEMVQPNMATFVSDLSACSHMGQVDRGLHFFRMMGKE 390
Query: 281 FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEM 340
+GL+PK EHFGC+VDLLGRSGRL EA +L++EL EP VSV+ SLLGAC C+L+S+LGEEM
Sbjct: 391 YGLQPKPEHFGCIVDLLGRSGRLGEAXDLMQELAEPPVSVFASLLGACRCYLDSNLGEEM 450
Query: 341 AMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
A KL ++EPENP P V+LSNIY GLGRW++V RIR MI D+ L KL G S
Sbjct: 451 AKKLLDIEPENPAPLVVLSNIYVGLGRWKEVERIRGMITDKGLDKLSGFS 500
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558198|ref|XP_002520126.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540618|gb|EEF42181.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 161/264 (60%), Positives = 201/264 (76%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M+E + +PNS+T +SVI+AC++LLY+QFG QVH K + DTM+GT+LVDMY KCG
Sbjct: 326 MREYSTLKPNSLTLVSVIAACSTLLYIQFGMQVHVFLKKTQMGCDTMVGTSLVDMYSKCG 385
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
A+NVF E+ ++N++TWN+MIAGMMLN +S+ A+ELFE L +G +PD ATWNSMI
Sbjct: 386 YWKWAYNVFNEMNDNKNLITWNSMIAGMMLNAQSQNAIELFELLESQGLEPDSATWNSMI 445
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGF QL EAFK F+KMQ +GMVPSLK VTS+L+ACA L+AL+ GKE HGHV+R ++N
Sbjct: 446 SGFEQLDKGVEAFKFFKKMQLSGMVPSLKSVTSLLAACASLTALQCGKEIHGHVVRTNMN 505
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
DE MAT LI MYMKCG W +R FDQFEIKP DPA WNA+ISGY RNGE ES E+FD
Sbjct: 506 FDEFMATGLIDMYMKCGFSLWGQRVFDQFEIKPKDPAIWNALISGYARNGENESVFEVFD 565
Query: 241 LMQQEKVKPNSASFVAVLSACGHA 264
M +EKV+PN +F VL+ CGH
Sbjct: 566 QMLEEKVEPNLTTFTGVLTVCGHT 589
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| TAIR|locus:2058812 | 613 | AT2G02750 [Arabidopsis thalian | 0.989 | 0.636 | 0.630 | 2e-134 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.954 | 0.539 | 0.388 | 2.4e-69 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.946 | 0.698 | 0.393 | 2.4e-69 | |
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.766 | 0.293 | 0.379 | 2.3e-67 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.695 | 0.282 | 0.388 | 8.8e-67 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.845 | 0.426 | 0.413 | 1.7e-66 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.961 | 0.498 | 0.365 | 5.8e-66 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.946 | 0.505 | 0.371 | 8.5e-65 | |
| TAIR|locus:2007888 | 731 | AT1G17630 [Arabidopsis thalian | 0.936 | 0.504 | 0.374 | 2.9e-64 | |
| TAIR|locus:2089333 | 654 | AT3G16610 "AT3G16610" [Arabido | 0.730 | 0.440 | 0.377 | 4.2e-63 |
| TAIR|locus:2058812 AT2G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 246/390 (63%), Positives = 310/390 (79%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M++ S+EPN VTF++ I+ACASLL LQ+GRQ+HGL +K E Q +TM+GTAL+DMY KC
Sbjct: 221 MRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCR 280
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C A+ VF ELK +RN+++WN++I+GMM+NG+ E A+ELFE L EG KPD ATWNS+I
Sbjct: 281 CWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLI 340
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
SGFSQLG EAFK FE+M S MVPSLKC+TS+LSAC+D+ LK GKE HGHVI+A
Sbjct: 341 SGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAE 400
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+D + T+LI MYMKCG SWARR FD+FE KP DP FWN MISGYG++GE ESA+EIF+
Sbjct: 401 RDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFE 460
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
L+++EKV+P+ A+F AVLSAC H G+V+K QIF +M +++G KP EH GCM+DLLGRS
Sbjct: 461 LLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRS 520
Query: 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360
GRL EA+E+I ++ EP+ SVY SLLG+C HL+ LGEE AMKL E+EPENP PFVILS+
Sbjct: 521 GRLREAKEVIDQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSS 580
Query: 361 IYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
IYA L RWEDV IRQ+I+ +QL KLPG+S
Sbjct: 581 IYAALERWEDVESIRQVIDQKQLVKLPGLS 610
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 152/391 (38%), Positives = 232/391 (59%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEK-QSDTMIGTALVDMYLKCGCLPCAH 66
EP+ VT SVISACASL ++ G++VHG +K +K ++D ++ A VDMY KC + A
Sbjct: 250 EPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEAR 309
Query: 67 NVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126
+F + RN++ +MI+G + ++ A +F +A +WN++I+G++Q
Sbjct: 310 FIFDSMP-IRNVIAETSMISGYAMAASTKAARLMFTKMAERNV----VSWNALIAGYTQN 364
Query: 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN-----K 181
G EA LF ++ + P+ ++L ACADL+ L LG + H HV++ +
Sbjct: 365 GENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEE 424
Query: 182 DES-MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
D+ + +LI MY+KCG F + + D WNAMI G+ +NG A+E+F
Sbjct: 425 DDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER--DCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
M + KP+ + + VLSACGHAG V++ F+ M DFG+ P ++H+ CMVDLLGR+
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRA 542
Query: 301 GRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359
G L+EA+ +I E+P +P ++ SLL AC H N LG+ +A KL E+EP N P+V+LS
Sbjct: 543 GFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLS 602
Query: 360 NIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
N+YA LG+WEDV +R+ + +TK PG S
Sbjct: 603 NMYAELGKWEDVMNVRKSMRKEGVTKQPGCS 633
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 150/381 (39%), Positives = 222/381 (58%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ TF + +CASL G+QVHG K + + AL+DMY+K L AH V
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F E+ R++++WN++++G G+ +KA +GL H +W +MISG++ +G
Sbjct: 167 FDEMY-ERDVISWNSLLSGYARLGQMKKA----KGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA F +MQ G+ P + SVL +CA L +L+LGK H + R K + A
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNA 281
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG S A + F Q E K D W+ MISGY +G A+E F+ MQ+ KVK
Sbjct: 282 LIEMYSKCGVISQAIQLFGQMEGK--DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVK 339
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
PN +F+ +LSAC H G + L+ F MM D+ ++PK EH+GC++D+L R+G+L+ A E
Sbjct: 340 PNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVE 399
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
+ + +P +P ++ SLL +C N D+ L E+EPE+ +V+L+NIYA LG+
Sbjct: 400 ITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGK 459
Query: 368 WEDVGRIRQMINDRQLTKLPG 388
WEDV R+R+MI + + K PG
Sbjct: 460 WEDVSRLRKMIRNENMKKTPG 480
|
|
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 117/308 (37%), Positives = 176/308 (57%)
Query: 85 IAGMMLNGRS-EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143
+ GM +N R +A LF L+ W M+SG SQ G EA K +++M+ G
Sbjct: 671 LLGMYMNSRGMTEACALFSELSSP---KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDG 727
Query: 144 MVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWAR 203
++P +VL C+ LS+L+ G+ H + + DE + LI MY KCG +
Sbjct: 728 VLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSS 787
Query: 204 RFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263
+ FD+ + + WN++I+GY +NG E A++IFD M+Q + P+ +F+ VL+AC H
Sbjct: 788 QVFDEMR-RRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSH 846
Query: 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIR-ELPEPTVSVYH 322
AG V +IF MM +G++ + +H CMVDLLGR G L EA + I + +P ++
Sbjct: 847 AGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWS 906
Query: 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382
SLLGAC H + GE A KL E+EP+N + +V+LSNIYA G WE +R+++ DR
Sbjct: 907 SLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRG 966
Query: 383 LTKLPGIS 390
+ K+PG S
Sbjct: 967 VKKVPGYS 974
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 8.8e-67, Sum P(2) = 8.8e-67
Identities = 108/278 (38%), Positives = 172/278 (61%)
Query: 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHV 174
+WN++I+G+ Q G A +F +M G+ + V AC+ L +L+LG+E H +
Sbjct: 564 SWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYA 623
Query: 175 IRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYES 234
++ L D +A +LI MY K G + + + F+ +K A WNAMI GYG +G +
Sbjct: 624 LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNG--LKEKSTASWNAMIMGYGIHGLAKE 681
Query: 235 AVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294
A+++F+ MQ+ P+ +F+ VL+AC H+G + + L+ M FGLKP +H+ C++
Sbjct: 682 AIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVI 741
Query: 295 DLLGRSGRLDEARELIRE--LPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352
D+LGR+G+LD+A ++ E E V ++ SLL +C H N ++GE++A KL E+EPE P
Sbjct: 742 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKP 801
Query: 353 TPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
+V+LSN+YAGLG+WEDV ++RQ +N+ L K G S
Sbjct: 802 ENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCS 839
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 141/341 (41%), Positives = 207/341 (60%)
Query: 51 ALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFK 110
A++ Y++ + A +F ++ RN+ TWNTMI G G+ +A LF+ + K
Sbjct: 317 AMLAGYVQGERMEMAKELF-DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP----K 371
Query: 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170
DP +W +MI+G+SQ G FEA +LF +M+ G + +S LS CAD+ AL+LGK+
Sbjct: 372 RDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431
Query: 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNG 230
HG +++ + AL+ MY KCG A F + K D WN MI+GY R+G
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK--DIVSWNTMIAGYSRHG 489
Query: 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF 290
E A+ F+ M++E +KP+ A+ VAVLSAC H G VDK Q F M D+G+ P +H+
Sbjct: 490 FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHY 549
Query: 291 GCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349
CMVDLLGR+G L++A L++ +P EP +++ +LLGA H N++L E A K+ MEP
Sbjct: 550 ACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEP 609
Query: 350 ENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
EN +V+LSN+YA GRW DVG++R + D+ + K+PG S
Sbjct: 610 ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYS 650
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 140/383 (36%), Positives = 224/383 (58%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ VT SV+ + L GR +HG +K D + +A++DMY K G + ++
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISL 309
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + + N I G+ NG +KA+E+FE + + + +W S+I+G +Q G
Sbjct: 310 FNQFE-MMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
EA +LF +MQ G+ P+ + S+L AC +++AL G+ THG +R L + + +A
Sbjct: 369 DIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSA 428
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY KCG+ + ++ F+ K + WN++++G+ +G+ + + IF+ + + ++K
Sbjct: 429 LIDMYAKCGRINLSQIVFNMMPTK--NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLK 486
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ SF ++LSACG G D+ + F MM +++G+KP+ EH+ CMV+LLGR+G+L EA +
Sbjct: 487 PDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYD 546
Query: 309 LIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367
LI+E+P EP V+ +LL +C N DL E A KL +EPENP +V+LSNIYA G
Sbjct: 547 LIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGM 606
Query: 368 WEDVGRIRQMINDRQLTKLPGIS 390
W +V IR + L K PG S
Sbjct: 607 WTEVDSIRNKMESLGLKKNPGCS 629
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| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 142/382 (37%), Positives = 218/382 (57%)
Query: 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQE 71
VT + V+SACA + L+FGRQV + + + A++DMY KCG + A +F
Sbjct: 233 VTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 292
Query: 72 LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE 131
++ N+ TW TM+ G ++ E A E+ + + D WN++IS + Q G E
Sbjct: 293 MEEKDNV-TWTTMLDGYAISEDYEAAREVLNSMPQK----DIVAWNALISAYEQNGKPNE 347
Query: 132 AFKLFEKMQ-STGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALI 190
A +F ++Q M + + S LSACA + AL+LG+ H ++ + + + + +ALI
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 191 SMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN 250
MY KCG +R F+ E + D W+AMI G +G AV++F MQ+ VKPN
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKR--DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPN 465
Query: 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310
+F V AC H G VD+A +F M+ ++G+ P+++H+ C+VD+LGRSG L++A + I
Sbjct: 466 GVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI 525
Query: 311 RELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369
+P P+ SV+ +LLGAC H N +L E +L E+EP N V+LSNIYA LG+WE
Sbjct: 526 EAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWE 585
Query: 370 DVGRIRQMINDRQLTKLPGISA 391
+V +R+ + L K PG S+
Sbjct: 586 NVSELRKHMRVTGLKKEPGCSS 607
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| TAIR|locus:2007888 AT1G17630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 141/377 (37%), Positives = 220/377 (58%)
Query: 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNI 78
S CA L L +VHG +K + AL+ +Y K G + A ++F++++ ++ I
Sbjct: 302 SVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIR-NKGI 360
Query: 79 LTWNTMIAGMMLNGRSEKAMELF---EGLAHE-GFKPDPATWNSMISGFSQLGMRFEAFK 134
+WN++I + G+ ++A+ LF E + H K + TW S+I G + G ++ +
Sbjct: 361 ESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLE 420
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194
F +MQ + ++ + + +LS CA+L AL LG+E HGHVIR ++++ + AL++MY
Sbjct: 421 YFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYA 480
Query: 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254
KCG S F+ I+ D WN++I GYG +G E A+ +FD M P+ +
Sbjct: 481 KCGLLSEGSLVFEA--IRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIAL 538
Query: 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314
VAVLSAC HAG V+K +IF M FGL+P+QEH+ C+VDLLGR G L EA E+++ +P
Sbjct: 539 VAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMP 598
Query: 315 -EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373
EP V V +LL +C H N D+ E +A +L +EPE +++LSNIY+ GRWE+
Sbjct: 599 MEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESAN 658
Query: 374 IRQMINDRQLTKLPGIS 390
+R + + L K+ G S
Sbjct: 659 VRALAKKKDLKKVSGSS 675
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| TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 111/294 (37%), Positives = 173/294 (58%)
Query: 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158
+ F + G K D ++NS+I+G E+F+LF +M+++G+ P + + VL+AC
Sbjct: 361 DAFRQFSEIGLK-DVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTAC 419
Query: 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF 218
+ L+AL G HG+ + + S+ AL+ MY KCG+ A+R FD + D
Sbjct: 420 SHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKR--DIVS 477
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278
WN M+ G+G +G + A+ +F+ MQ+ V P+ + +A+LSAC H+G VD+ Q+F M
Sbjct: 478 WNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMS 537
Query: 279 -DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDL 336
DF + P+ +H+ CM DLL R+G LDEA + + ++P EP + V +LL ACW + N++L
Sbjct: 538 RGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAEL 597
Query: 337 GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
G E++ K+Q + E V+LSN Y+ RWED RIR + R L K PG S
Sbjct: 598 GNEVSKKMQSLG-ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYS 650
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029007001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (643 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 394 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-79 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-71 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-39 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 1e-79
Identities = 126/391 (32%), Positives = 213/391 (54%), Gaps = 41/391 (10%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
+ E + P+ +T SV+SACA L L G ++H L + S ++ AL++MY KC
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
C+ A VF + +++++W ++IAG+ LN R
Sbjct: 439 CIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRC-------------------------- 471
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
FEA F +M T + P+ + + LSACA + AL GKE H HV+R +
Sbjct: 472 ---------FEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
D + AL+ +Y++CG+ ++A ++QF D WN +++GY +G+ AVE+F+
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYA---WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
M + V P+ +F+++L AC +G V + L+ F M++ + + P +H+ C+VDLLGR+
Sbjct: 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 301 GRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359
G+L EA I ++P P +V+ +LL AC H + +LGE A + E++P + +++L
Sbjct: 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698
Query: 360 NIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
N+YA G+W++V R+R+ + + LT PG S
Sbjct: 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCS 729
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 2e-71
Identities = 133/391 (34%), Positives = 201/391 (51%), Gaps = 40/391 (10%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M E SD TF+ ++ A A L + G+Q+H LK DT + AL+DMY KCG
Sbjct: 215 MWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
+ A VF + + + WN+M+AG L+G SE+A+ L+ + G D T++ MI
Sbjct: 274 DIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
FS+L + L+ K+ H +IR
Sbjct: 333 RIFSRLAL-----------------------------------LEHAKQAHAGLIRTGFP 357
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
D TAL+ +Y K G+ AR FD+ K + WNA+I+GYG +G AVE+F+
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRK--NLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300
M E V PN +F+AVLSAC ++G ++ +IF M ++ +KP+ H+ CM++LLGR
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
Query: 301 GRLDEARELIRELP-EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359
G LDEA +IR P +PTV+++ +LL AC H N +LG A KL M PE +V+L
Sbjct: 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535
Query: 360 NIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390
N+Y GR + ++ + + + L+ P +
Sbjct: 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-39
Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 40/324 (12%)
Query: 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNV 68
P+ TF V+ C + L GR+VH ++ + D + AL+ MY+KCG + A V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 69 FQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128
F + R+ ++WN MI+G NG E EGL
Sbjct: 245 FDRMP-RRDCISWNAMISGYFENG------ECLEGL------------------------ 273
Query: 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188
+LF M+ + P L +TSV+SAC L +LG+E HG+V++ D S+ +
Sbjct: 274 -----ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 189 LISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
LI MY+ G A + F + E K D W AMISGY +NG + A+E + LM+Q+ V
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETK--DAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308
P+ + +VLSAC G +D +++ + + GL ++++ + +D+A E
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALE 445
Query: 309 LIRELPEPTVSVYHSLL-GACWCH 331
+ +PE V + S++ G +
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNN 469
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 2e-30
Identities = 81/265 (30%), Positives = 116/265 (43%), Gaps = 40/265 (15%)
Query: 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
M+E LS +P+ +T SVISAC L + GR++HG +K D + +L+ MYL G
Sbjct: 279 MRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 61 CLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120
A VF ++ +++ ++W MI+G NG +KA+E + + + PD T
Sbjct: 338 SWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT----- 391
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
+ SVLSACA L L +G + H R L
Sbjct: 392 ------------------------------IASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+A ALI MY KC A F K D W ++I+G N A+ F
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEK--DVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 241 LMQQEKVKPNSASFVAVLSACGHAG 265
M +KPNS + +A LSAC G
Sbjct: 480 QMLL-TLKPNSVTLIAALSACARIG 503
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHV 174
+WN ++ G+++ G EA L+ +M G+ P + VL C + L G+E H HV
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 175 IRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYES 234
+R D + ALI+MY+KCG AR FD+ + D WNAMISGY NGE
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR--DCISWNAMISGYFENGECLE 271
Query: 235 AVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273
+E+F M++ V P+ + +V+SAC G ++
Sbjct: 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-25
Identities = 88/390 (22%), Positives = 156/390 (40%), Gaps = 72/390 (18%)
Query: 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72
T+ +++ AC +L ++ + V+ + D + ++ M++KCG L A +F E+
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 73 KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132
RN+ +W T+I G G EA
Sbjct: 185 P-ERNLASWGTII-----------------------------------GGLVDAGNYREA 208
Query: 133 FKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISM 192
F LF +M G + +L A A L + + G++ H V++ + D ++ ALI M
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 193 YMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252
Y KCG AR FD K WN+M++GY +G E A+ ++ M+ V +
Sbjct: 269 YSKCGDIEDARCVFDGMPEK--TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326
Query: 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG--------------CMVDLLG 298
+F ++ ++ A KQ H G +VDL
Sbjct: 327 TFSIMIRIFSRLALLEHA---------------KQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 299 RSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKL--QEMEPENPTPFV 356
+ GR+++AR + +P + +++L+ H EM ++ + + P + T
Sbjct: 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 357 ILSNI-YAGLGRWEDVGRIRQMINDRQLTK 385
+LS Y+GL E I Q +++ K
Sbjct: 432 VLSACRYSGLS--EQGWEIFQSMSENHRIK 459
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Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 7e-21
Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 15/246 (6%)
Query: 94 SEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS 153
+ A+ + + G K D + ++IS ++ G F++F +M + G+ ++ +
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 154 VLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFD-----Q 208
++ CA + +G + ++ D + ALIS CGQ R FD +
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS---ACGQSGAVDRAFDVLAEMK 569
Query: 209 FEIKPDDP--AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH 266
E P DP A++ G+ + A E++ ++ + +K + +++C G
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP----EPTVSVYH 322
D AL I+ M G+KP + F +VD+ G +G LD+A E++++ + Y
Sbjct: 630 WDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688
Query: 323 SLLGAC 328
SL+GAC
Sbjct: 689 SLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 63/290 (21%), Positives = 113/290 (38%), Gaps = 56/290 (19%)
Query: 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGL-AHEGFKPDPATWNSMISGFS 124
+ + ++ ++ + I ++ GR +A+ELFE L A F +T++++
Sbjct: 75 DARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDAL----- 129
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
+ AC L +++ K + HV + D+
Sbjct: 130 ------------------------------VEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 185 MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
M ++ M++KCG ARR FD E+ + A W +I G G Y A +F M +
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFD--EMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFT------MMDDDFGLKPKQEHFGC-MVDLL 297
+ +FV +L A G Q+ ++ D F C ++D+
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--------VSCALIDMY 269
Query: 298 GRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347
+ G +++AR + +PE T ++S+L H S EE EM
Sbjct: 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS---EEALCLYYEM 316
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 7e-13
Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 45/330 (13%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
P TF ++S CAS + +V L + ++D + T L+ K G +
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 68 VFQELKGS---RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124
VF E+ + N+ T+ +I G G+ KA + + + KPD +N++IS
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184
Q G AF + +M++ ETH ++ D
Sbjct: 554 QSGAVDRAFDVLAEMKA---------------------------ETH------PIDPDHI 580
Query: 185 MATALISMYMKCGQPSWARRFF---DQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
AL+ GQ A+ + ++ IK P + ++ + G+++ A+ I+D
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301
M+++ VKP+ F A++ GHAG +DKA +I G+K + ++ +
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAK 698
Query: 302 RLDEARELIRELP----EPTVSVYHSLLGA 327
+A EL ++ PTVS ++L+ A
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 27/213 (12%)
Query: 131 EAFKLFEKMQSTGMVPSLKCVTSVLSACAD-------LSALKLGKETHGHVIRADLNKDE 183
EAF+ F K+ P+L ++S CA L L+L +E A L D
Sbjct: 424 EAFR-FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-------AGLKADC 472
Query: 184 SMATALISMYMKCGQPSWARRFFDQFE---IKPDDPAFWNAMISGYGRNGEYESAVEIFD 240
+ T LIS K G+ F + ++ + F A+I G R G+ A +
Sbjct: 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF-GALIDGCARAGQVAKAFGAYG 531
Query: 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT-MMDDDFGLKPKQEHFGCMVDLLGR 299
+M+ + VKP+ F A++SACG +G VD+A + M + + P G ++
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 300 SGRLDEARELIRELPE----PTVSVYHSLLGAC 328
+G++D A+E+ + + E T VY + +C
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 6e-10
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125
+++T+NT+I G G+ E+A++LF + G KP+ T++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 4e-09
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261
+N +I GY + G+ E A+++F+ M++ +KPN ++ ++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160
PD T+N++I G+ + G EA KLF +M+ G+ P++ + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 7e-07
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS 251
+N +I G + G E A+E+F M++ ++P+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 4e-06
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKV 247
+N++ISGY + G+ E A+E+F M+++ V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS 147
T+N++I G + G EA +LF++M+ G+ P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 3e-05
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 108 GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQ 140
G KPD T+N++I G + G EA +L ++M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (105), Expect = 3e-05
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 14/190 (7%)
Query: 192 MYMKCGQPSWARRFFDQF---EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248
+K G+ A ++ E+ P+ + G+YE A+E+ +
Sbjct: 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD 127
Query: 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS----GRLD 304
P+ A + L A G ++AL+++ L P+ + LG GR +
Sbjct: 128 PDLAEALLALGALYELGDYEEALELYEKA---LELDPELNELAEALLALGALLEALGRYE 184
Query: 305 EARELIR---ELPEPTVSVYHSLLGACWCHLNS-DLGEEMAMKLQEMEPENPTPFVILSN 360
EA EL+ +L + LG + L + E K E++P+N L+
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244
Query: 361 IYAGLGRWED 370
+ LGR+E+
Sbjct: 245 LLLELGRYEE 254
|
Length = 291 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 57/331 (17%), Positives = 125/331 (37%), Gaps = 80/331 (24%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHN 67
E N TF ++I CA + G + A
Sbjct: 504 EANVHTFGALIDGCA-----------------------------------RAGQVAKAFG 528
Query: 68 VFQELKGSRNI----LTWNTMIAGMMLNGRSEKAMELFEGLAHEG--FKPDPATWNSMIS 121
+ ++ S+N+ + +N +I+ +G ++A ++ + E PD T +++
Sbjct: 529 AYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 122 GFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK 181
+ G A ++++ + + + + T +++C+ + G I D+ K
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-----QKGDWDFALSIYDDMKK 642
Query: 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241
+KPD+ F++A++ G G+ + A EI
Sbjct: 643 K---------------------------GVKPDE-VFFSALVDVAGHAGDLDKAFEILQD 674
Query: 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301
+++ +K + S+ +++ AC +A + KAL+++ + L+P ++ L
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGN 733
Query: 302 RLDEARELIRELPE----PTVSVYHSLLGAC 328
+L +A E++ E+ P Y LL A
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-05
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGM 144
T+NS+ISG+ + G EA +LF++M+ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD 112
T+NT+I G+ GR E+A+ELF+ + G +PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 66/321 (20%), Positives = 124/321 (38%), Gaps = 53/321 (16%)
Query: 8 EPNSVTFISVISACASLLYLQFGRQVHGLT-LKIEKQS---DTMIGTALVDMYLKCGCLP 63
+P+ V F ++ISAC + R L +K E D + AL+ G +
Sbjct: 539 KPDRVVFNALISACGQSGAVD--RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 64 CAHNVFQEL-----KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS 118
A V+Q + KG+ + T + G + A+ +++ + +G KPD +++
Sbjct: 597 RAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 119 MISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD 178
++ G +AF++ + + G+ +S++ AC++ K E + +
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 179 LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238
L S ALI+ A+ G + A+E+
Sbjct: 715 LRPTVSTMNALIT-----------------------------ALCEG----NQLPKALEV 741
Query: 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298
M++ + PN+ ++ +L A D L + + +D G+KP C+ L
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCL 800
Query: 299 RSGRLDEARELIRELPEPTVS 319
R R ++A L EP VS
Sbjct: 801 R--RFEKA----CALGEPVVS 815
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
+NA++ + G+ + A+ + + M+ +KP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 75 SRNILTWNTMIAGMMLNGRSEKAMELFE 102
+++T+NT+I G+ GR ++A+EL +
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 47/269 (17%), Positives = 95/269 (35%), Gaps = 41/269 (15%)
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFE----A 132
N N + A + G KA E FE + +P + + + +++ ++ A
Sbjct: 464 NASLHNLLGAIYLGKGDLAKAREAFE----KALSIEPDFFPAAAN-LARIDIQEGNPDDA 518
Query: 133 FKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETH----GHVIRADLNKDESMATA 188
+ FEK ++ + A A L +E + ++ A A
Sbjct: 519 IQRFEK-----VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572
Query: 189 LISMYMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247
L Y+ GQ A ++ + PD P W + G+ AV F + +
Sbjct: 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK--KLLAL 630
Query: 248 KPNSASFVAVLSAC--------GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR 299
+P+SA + +L+ + +AL++ + + LL
Sbjct: 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG---------LAQLLLA 681
Query: 300 SGRLDEARELIRELPE--PTVSVYHSLLG 326
+ R + A+++ + L + P ++ L G
Sbjct: 682 AKRTESAKKIAKSLQKQHPKAALGFELEG 710
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146
T+N+++ ++ G A + E+M+++G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.55 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.55 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.44 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.3 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.28 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.21 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.21 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.2 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.2 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.07 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.02 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.01 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.99 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.96 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.92 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.87 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.87 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.87 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.86 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.82 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.8 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.77 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.74 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.68 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.63 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.6 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.52 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.48 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.43 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.41 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.39 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.31 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.3 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.3 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.28 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.23 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.19 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.18 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.17 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.08 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.05 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.05 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.05 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.05 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.98 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.96 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.95 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.88 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.87 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.8 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.74 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.73 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.63 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.63 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.6 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.47 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.31 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.13 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.06 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.02 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.9 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.87 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.79 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.54 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 96.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.91 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.87 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.78 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.65 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.65 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.56 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.52 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.38 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.37 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.36 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 95.35 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.31 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.16 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.97 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.85 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.61 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.13 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.06 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.97 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.9 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.88 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.62 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.23 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.08 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.5 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 92.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.23 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.0 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.0 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.98 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.92 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.78 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.6 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.48 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.21 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 91.11 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.78 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.72 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.36 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.34 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.05 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.94 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.91 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 89.77 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.74 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.68 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.12 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 88.82 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.8 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.77 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.54 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.41 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.27 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.1 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.1 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.05 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.5 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.28 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.21 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.67 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.16 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.03 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.87 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 85.83 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.41 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.35 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.09 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.94 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.59 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.5 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.86 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.62 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.45 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.19 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.14 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.78 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.75 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.72 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 82.38 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.25 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 81.55 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 81.54 | |
| PF09454 | 65 | Vps23_core: Vps23 core domain; InterPro: IPR017916 | 81.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.11 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 80.92 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 80.91 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.79 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.48 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 80.45 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 80.33 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.22 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 80.21 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=472.40 Aligned_cols=385 Identities=32% Similarity=0.545 Sum_probs=366.7
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMI 85 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 85 (394)
++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+||+++
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li 196 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTII 196 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC------------------------------------------------------
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKP------------------------------------------------------ 111 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p------------------------------------------------------ 111 (394)
.+|++.|++++|+++|++|.+.|+.|
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999998777655
Q ss_pred ------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCC
Q 016128 112 ------------DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADL 179 (394)
Q Consensus 112 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 179 (394)
|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 56678888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
.|+..+++.|+.+|++.|++++|.++|++|.. +|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHH
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 338 (394)
+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++.+|++.|++++|.++++++.. |+..+|+.++.+|..+|+.+.|.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999988779999999999999999999999999999999976 77779999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCCC
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 393 (394)
.+++++.+++|.+..+|..++++|.+.|++++|.+++++|.+.|+.+.|++||++
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 9999999999999999999999999999999999999999999999999999975
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-62 Score=466.14 Aligned_cols=388 Identities=31% Similarity=0.601 Sum_probs=351.8
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhH
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILT 80 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 80 (394)
|++. |+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 279 M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s 356 (857)
T PLN03077 279 MREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVS 356 (857)
T ss_pred HHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeee
Confidence 5667 99999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
||+++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888888888887777777777777777777
Q ss_pred cchhhHHHHHHHHHHHc------------------------------CCCCCHH--------------------------
Q 016128 161 LSALKLGKETHGHVIRA------------------------------DLNKDES-------------------------- 184 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~------------------------------~~~~~~~-------------------------- 184 (394)
.|++++|.++|++|.+. ++.||..
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 77777666666655321 2334443
Q ss_pred ---------HHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 185 ---------MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 185 ---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
++++|+.+|++.|++++|.++|+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 4445556777777888888888777 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC-CCChhhHHHHHHHHHhcCCc
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-EPTVSVYHSLLGACWCHLNS 334 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 334 (394)
.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++.+|.+.|++++|.+++++|. +|+..+|++|+.+|..+|+.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999666999999999999999999999999999999996 58888999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCCC
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 393 (394)
+.+....+++.+++|+++..|..+.+.|.+.|+|++|.++.+.|.+.|++++||+|||+
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=450.62 Aligned_cols=379 Identities=21% Similarity=0.307 Sum_probs=333.7
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCChhHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SRNILTWNTM 84 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l 84 (394)
.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3888999999999999999999999999999999999999999999999999999999999999876 5889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHhhccc
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS--TGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~~ 162 (394)
|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999976 578899999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|... .||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876 6778889999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----C
Q 016128 241 LMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----P 316 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~ 316 (394)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|++++|.++|++|.. |
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999876 8899999999999999999999999999998864 8
Q ss_pred ChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCCchHHHHHHHHhh----cC-------------------CcccHH
Q 016128 317 TVSVYHSLLGACWCHLNSDLGEEMAMKLQEME-PENPTPFVILSNIYAG----LG-------------------RWEDVG 372 (394)
Q Consensus 317 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~g-------------------~~~~a~ 372 (394)
|..+|+.++.+|.+.|+.++|.++++++.+.+ .++..+|..++..|.+ ++ ..+.|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 88899999999999999999999999998877 5577788888765432 11 235688
Q ss_pred HHHHHhhhccccccC
Q 016128 373 RIRQMINDRQLTKLP 387 (394)
Q Consensus 373 ~~~~~m~~~~~~~~~ 387 (394)
.+|++|.+.|+.|+.
T Consensus 833 ~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 833 MVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHHHHCCCCCCH
Confidence 899999999988874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=451.51 Aligned_cols=381 Identities=17% Similarity=0.272 Sum_probs=352.1
Q ss_pred CccccCC-CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CC
Q 016128 1 MKECLSD-EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SR 76 (394)
Q Consensus 1 M~~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 76 (394)
|.+. |+ .|+..+++.++..|.+.|.++.|.++++.|.. |+..+|+.++.+|++.|+++.|.++|++|.. .|
T Consensus 396 M~~~-gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p 470 (1060)
T PLN03218 396 MEKR-GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470 (1060)
T ss_pred HHhC-CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 3444 53 45666667777777777777777777776653 8999999999999999999999999999986 68
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCCh
Q 016128 157 ACADLSALKLGKETHGHVIR--ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEY 232 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 232 (394)
+|++.|++++|.+++++|.+ .|+.||..+|+.++.+|++.|++++|.++|+.|... +++..+|+.++.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 99999999999999999976 678999999999999999999999999999999876 67888999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHh
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (394)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+. |+.|+..+|+.|+.+|++.|++++|.++|++
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CC----CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccC
Q 016128 313 LP----EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLP 387 (394)
Q Consensus 313 ~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 387 (394)
|. .|+..+|+.++.+|.+.|++++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.+++++|.+.|+.|+.
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 95 3888899999999999999999999999999876 668899999999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=441.15 Aligned_cols=380 Identities=27% Similarity=0.407 Sum_probs=348.7
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhH
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILT 80 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 80 (394)
|++. |+.||..||+.++++|++.+++..+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|+ .+|..+
T Consensus 178 M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s 255 (857)
T PLN03077 178 MLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCIS 255 (857)
T ss_pred HHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcch
Confidence 5566 88899999999999988888888888888888888888999999999999999999999999999999 889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------------------------------------------
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD------------------------------------------------ 112 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~------------------------------------------------ 112 (394)
||++|.+|++.|++++|+++|++|...|+.||
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999988888774
Q ss_pred ------------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHH
Q 016128 113 ------------------PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHV 174 (394)
Q Consensus 113 ------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (394)
..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 44455556666677777888888888888888999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH
Q 016128 175 IRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254 (394)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (394)
.+.|+.|+..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999999999999999999987 7889999999999999999999999999986 589999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNS 334 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 334 (394)
+.++.+|++.|+++.+.+++..+.+. |+.++..+++.|+.+|.++|++++|.++|+++ .||..+|+.++.+|.+.|+.
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCH
Confidence 99999999999999999999999988 99999999999999999999999999999999 78888999999999999999
Q ss_pred hHHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhh-hccccccC
Q 016128 335 DLGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMIN-DRQLTKLP 387 (394)
Q Consensus 335 ~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~ 387 (394)
++|+++|++|.+.+ .||..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999877 6688999999999999999999999999999 68998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=420.19 Aligned_cols=375 Identities=21% Similarity=0.283 Sum_probs=359.6
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCChhHHH
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SRNILTWN 82 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 82 (394)
..++..+|+.+|..+.+.|++++|.++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..+.. .||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566799999999999999999999999999765 689999999999999999999999999999876 68999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999974 7999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
+.+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.. +|..+||.++.+|++.|+.++|.++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 79999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHH
Q 016128 243 QQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYH 322 (394)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 322 (394)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+++.|+.+|++.|++++|.++|++|.+||..+|+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n 395 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-ccccccCC
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMIND-RQLTKLPG 388 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 388 (394)
.++.+|.+.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+..
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999877 66889999999999999999999999999986 68888753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-28 Score=237.52 Aligned_cols=364 Identities=13% Similarity=0.098 Sum_probs=256.4
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~ 87 (394)
+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. +.+...+..++..
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 44566677777778888888888888887665 55677777788888888888888888877653 3455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 167 (394)
+.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 778888888888888777653 3366777777778888888888888887777653 33556677777777777888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
...++++.+.. +.+...+..++..+...|++++|.++++.+... +.++..+..+...+...|++++|...|+++...+
T Consensus 655 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 655 ITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 88777777654 335666777777777777777777777776654 4455566777777777777777777777776653
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHH
Q 016128 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHS 323 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ 323 (394)
|+..++..++..+...|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++.+ |+.. +++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445666667777777777777777777665 3345566667777777777777777777777654 4444 6666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++..+...|+ .+|+..++++.+..|.++..+..++.++.+.|++++|..+++++.+.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666 667777777766666666666666667777777777777777766654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=233.09 Aligned_cols=364 Identities=13% Similarity=0.043 Sum_probs=219.1
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMI 85 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll 85 (394)
+++..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.. +.+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3445566666666666666666666666666544 44455555666666666666666666666543 33455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
..+.+.|++++|...++++...+. .+...+..++..|...|++++|..+++++.+.. +.+...|..+..++...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666655432 244555566666666666666666666665442 345556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
+|...++.+.+.. +.+...+..+..++...|++++|...|+++... |.+...+..++..+...|++++|..+++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 224455556666666666666666666665443 44455566666666666666666666666655
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hH
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VY 321 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~ 321 (394)
.+ +++...+..+...+...|++++|.+.++.+... .|+..++..++..+.+.|++++|.+.++++.+ |+.. .+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 53 234555555666666666666666666666543 33445555566666666666666666666554 4444 56
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
..+...+...|+.++|.+.|+++.+..|+++.++..++.++.+.|+ .+|+..++++.+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666 556666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=189.18 Aligned_cols=362 Identities=12% Similarity=0.017 Sum_probs=288.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
+......+.+.|+++.|+..|+..++. .|+...|..+..+|.+.|++++|+..+++... +.+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445666788889999999999998875 46788899999999999999999999999875 44667899999999999
Q ss_pred CCHHHHHHHHHHHHhcCC----------------------------CC-CHHHHHHH-----------------------
Q 016128 92 GRSEKAMELFEGLAHEGF----------------------------KP-DPATWNSM----------------------- 119 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~----------------------------~p-~~~~~~~l----------------------- 119 (394)
|++++|+.-|......+. .| +...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432210 00 00000000
Q ss_pred -------HHHH------HccCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH
Q 016128 120 -------ISGF------SQLGMRFEAFKLFEKMQSTG-MVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES 184 (394)
Q Consensus 120 -------~~~~------~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (394)
+... ...+++++|++.|++..+.+ ..| ....+..+...+...|++++|...+++.++... ....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 0000 12357889999999998764 233 445677888888999999999999999988753 3466
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.|..+...+...|++++|...|++.... |.++..|..+...+...|++++|+..|++..+... .+...+..+...+.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHH
Confidence 7888999999999999999999987655 67788899999999999999999999999988742 356778888899999
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h-------HHHHHHHHHhcCC
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V-------YHSLLGACWCHLN 333 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~-------~~~l~~~~~~~g~ 333 (394)
.|++++|+..++...+ ..+.++..++.+...+...|++++|...|++... |+.. . ++.....+...|+
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999986 3455678899999999999999999999999775 3321 1 1222223344699
Q ss_pred chHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 334 SDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+++|.++++++.+++|.+...+..++.++.+.|++++|++.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999889999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-23 Score=184.54 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=184.4
Q ss_pred HHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccC
Q 016128 53 VDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD---PATWNSMISGFSQLG 127 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~ 127 (394)
...+...|++++|+..|+++.. +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345667888888888888765 33455677777788888888888888887776532222 245677777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCchHHH
Q 016128 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDE----SMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~ 203 (394)
++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888877652 345667777777777788888888877777765433221 23344555666667777777
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCC
Q 016128 204 RFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG 282 (394)
Q Consensus 204 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 282 (394)
..|+++... |.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 777665543 33444566666666677777777777777665432222345566666666666666666666666543
Q ss_pred CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 016128 283 LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWC---HLNSDLGEEMAMKLQE 346 (394)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 346 (394)
.|+...+..++..+.+.|++++|..+++++.+ |+...++.++..+.. .|+.+++...++++.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 34444555666666666666666666665554 555555555544442 3456666666665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-23 Score=189.32 Aligned_cols=332 Identities=11% Similarity=-0.009 Sum_probs=268.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
...++..+.+.|+++.|..+++..+... +.+...+..++.+....|++++|+..|+++.. +.+...+..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4566778888999999999999999876 44556666666777889999999999999876 45667788888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETH 171 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 171 (394)
|++++|...+++..+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999999988632 25778888999999999999999999988765322 23333333 3477889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhh----HHHHHHHHHHcC
Q 016128 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYES----AVEIFDLMQQEK 246 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~ 246 (394)
+.+.+....++......+..++...|++++|...+++.... |.++..+..+...+...|++++ |+..|++..+..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 99887754445555566678888999999999999987665 6677778889999999999986 899999998864
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHH
Q 016128 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHS 323 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ 323 (394)
. .+...+..+...+...|++++|...++..... -+.+...+..+...+.+.|++++|...|+++.. |+.. .+..
T Consensus 281 P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 S-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3 36678889999999999999999999998863 234456777888999999999999999998875 6655 4445
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+..++...|+.++|...|+++.+..|.+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 67788899999999999999999988754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=185.75 Aligned_cols=300 Identities=13% Similarity=0.123 Sum_probs=249.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhcc
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS---LKCVTSVLSACADL 161 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~ 161 (394)
...+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456678999999999999998743 2567899999999999999999999999987543222 25678889999999
Q ss_pred chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCCh------hhHHHHHHHHhhcCChhhH
Q 016128 162 SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDP------AFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a 235 (394)
|+++.|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+....++. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998764 3467889999999999999999999999987653221 2356777888999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
...|+++.+.. +.+...+..+...+...|++++|.++++++... +......++..++.+|.+.|++++|...++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998864 234667888889999999999999999999864 2222245678899999999999999999999876
Q ss_pred --CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh---cCCcccHHHHHHHhhhccccccCCC
Q 016128 316 --PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG---LGRWEDVGRIRQMINDRQLTKLPGI 389 (394)
Q Consensus 316 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 389 (394)
|+...+..++..+.+.|++++|...++++.+..|+++ .+..++..+.. .|+.++++.++++|.+.++.|+|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7766778899999999999999999999999988775 55555555443 5689999999999999999998874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=176.59 Aligned_cols=360 Identities=13% Similarity=0.139 Sum_probs=187.0
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHH-HHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNT-MIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-ll~~ 87 (394)
-..+|..+...+-..|+++.|+++++.+++.. +.....|..+..++...|+.+.|.+.|.+... .|+.....+ +...
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 35788899999999999999999999999876 66788899999999999999999888887663 343332222 2223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhh
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALK 165 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~ 165 (394)
+-..|+.++|..-|.+..+. .|. ..+|+.|...+-.+|+...|+..|++.... .|+ ...|-.|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 33345555555555554443 221 334455555555555555555555554442 222 234444444444444445
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.|...+.+..... +....++..+...|-..|+.+-|+..+++.... |.-+..|+.|..++-..|+..+|...|++...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 4444444443332 112333444444444444444454444443333 23334444444444444445455444444444
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V 320 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~ 320 (394)
.. .....+.+.|...+...|.++.|..+|....+ +.|. ...++.|...|...|++++|+..+++... |.-. .
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 31 11233444444444444444444444444432 1222 23344444444444444444444444443 3333 4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
|+.+...|-..|+...|++.+.+++..+|.-..++..|+..|...|+..+|+.-++...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-21 Score=192.09 Aligned_cols=354 Identities=12% Similarity=0.048 Sum_probs=220.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCh---hHHH-----------
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNI---LTWN----------- 82 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~----------- 82 (394)
...+...|++++|...|+..++.. +.+..++..+..++.+.|++++|+..|++... .|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667789999999999999876 56788999999999999999999999998764 3322 1121
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh---
Q 016128 83 -TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC--- 158 (394)
Q Consensus 83 -~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--- 158 (394)
.....+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 223466788999999999999998743 366778888999999999999999999988753 22333443333333
Q ss_pred ---------------------------------------hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 159 ---------------------------------------ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 159 ---------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
...|++++|.+.+++..+... .+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 344556666666666555432 2444555556666666666
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh---------hHHHHHHHHHccCCHHH
Q 016128 200 SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA---------SFVAVLSACGHAGHVDK 269 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~ 269 (394)
++|...++++... |.++..+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 6666666665432 3344444333334444555555555544432211111100 01122333444455555
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
|.++++. .+.++..+..+...+.+.|++++|+..|++..+ |+.. .+..++..+...|++++|++.++.+.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5554441 123344455566666666666666666666654 5544 666666666666666666666666666
Q ss_pred hCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 347 MEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..|.++..+..++.++.+.|++++|.++++++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66666666666666666666666666666666553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-21 Score=179.10 Aligned_cols=328 Identities=8% Similarity=-0.048 Sum_probs=272.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
-...++..+.+.|++++|..+++.... +.+...+..++.+....|++++|...++++...... +...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 345567778889999999999998865 345566677778888899999999999999987433 67788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998753 345677888999999999999999999988776543 33344333 347889999999999
Q ss_pred HHHhhcC-C-CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH----HHHHHHHchh
Q 016128 206 FDQFEIK-P-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK----ALQIFTMMDD 279 (394)
Q Consensus 206 ~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 279 (394)
++.+... + .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++...+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9997664 2 233344556778899999999999999999875 3367788889999999999986 8999999886
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
. .+.+...+..+...+.+.|++++|...+++... |+.. .+..+..++...|++++|+..++++.+..|.++..+.
T Consensus 279 l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 F--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 344577889999999999999999999999887 7766 8888999999999999999999999999998877777
Q ss_pred HHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 357 ILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.++.++...|++++|+..+++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999999987653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-20 Score=185.44 Aligned_cols=369 Identities=10% Similarity=-0.006 Sum_probs=286.8
Q ss_pred CCC-ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCc-hHHH------------HHHHHHHHhcCChhHHHHHHHHh
Q 016128 7 DEP-NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSD-TMIG------------TALVDMYLKCGCLPCAHNVFQEL 72 (394)
Q Consensus 7 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~A~~~~~~~ 72 (394)
..| +...+..+...+.+.|++++|++.|++.++...... ...+ ......+.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345 677888888999999999999999999887653221 1112 12345677889999999999988
Q ss_pred cc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--------------------------------
Q 016128 73 KG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS-------------------------------- 118 (394)
Q Consensus 73 ~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------------------------------- 118 (394)
.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76 445667888889999999999999999998876322 2333322
Q ss_pred ----------HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH
Q 016128 119 ----------MISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA 188 (394)
Q Consensus 119 ----------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (394)
+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++++.+... .+...+..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a 534 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYA 534 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 2334556799999999999998763 33566778889999999999999999999987653 35555555
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcCCCChh-----------hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIKPDDPA-----------FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
+...+...++.++|...++.+.....+.. .+..+...+...|+.++|+.+++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 66677889999999999998765322211 123456778899999999999872 24466677888
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS 334 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 334 (394)
...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.++...+ |+.. .+..+..++...|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 99999999999999999999873 345678889999999999999999999998876 5665 778888999999999
Q ss_pred hHHHHHHHHHHhhCCCCCc------hHHHHHHHHhhcCCcccHHHHHHHhhh-ccccc
Q 016128 335 DLGEEMAMKLQEMEPENPT------PFVILSNIYAGLGRWEDVGRIRQMIND-RQLTK 385 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~ 385 (394)
++|.++++++....|+++. .+..++..+...|++++|+..+++... .|+.|
T Consensus 688 ~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999999999988765543 556678899999999999999999864 34543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=167.29 Aligned_cols=351 Identities=14% Similarity=0.124 Sum_probs=301.9
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~ 87 (394)
.+..|..+..++...|+.+.|.+.|...++.+ |...-..+.+...+-..|++++|...+.+..+ .|. ...|+.|...
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~ 227 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCV 227 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchH
Confidence 45788899999999999999999999988765 32333445566666678999999999988765 443 4679999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (394)
+-..|+...|+..|++..+. .|+ ..+|-.|...|...+.+++|+..|.+..... +.....+..+...|...|.++.
T Consensus 228 f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred HhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHH
Confidence 99999999999999999886 454 6689999999999999999999999887652 3345678888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
|...+++.++.... -+..|+.|..++-..|++.+|.+.+.+.... |...++.+.|...+...|.++.|..+|....+-
T Consensus 305 AI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 305 AIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999999987533 4678999999999999999999999987665 666788999999999999999999999998875
Q ss_pred CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h
Q 016128 246 KVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V 320 (394)
Q Consensus 246 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~ 320 (394)
.| -....+.|...|-++|++++|+..+++.. .+.|+. ..|+.+...|...|+.+.|.+.+.+.+. |.-. .
T Consensus 384 --~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 384 --FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred --ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 34 35678899999999999999999999998 567774 6889999999999999999999999987 5555 9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED 370 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (394)
++.|...|...|+..+|++.|+.++++.|+.|.+|..++.++--..+|.+
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999988776666665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-20 Score=173.06 Aligned_cols=367 Identities=11% Similarity=0.007 Sum_probs=233.8
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
..-..-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++... +.+...+..+...+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3333444444555555555555555554322 33344455555555555555555555555432 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-----
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA----- 163 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----- 163 (394)
...|++++|+..+++..+... .+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555555555555554411 1333 5555555555555555555555555432 1122222223333322222
Q ss_pred --------------------------------------h---hHHHHHHHHHHHc-CCCCCHH-HH-H---HHHHHHHHc
Q 016128 164 --------------------------------------L---KLGKETHGHVIRA-DLNKDES-MA-T---ALISMYMKC 196 (394)
Q Consensus 164 --------------------------------------~---~~a~~~~~~~~~~-~~~~~~~-~~-~---~l~~~~~~~ 196 (394)
+ ++|.+.++.+.+. ...|+.. .+ . ..+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 2 4555566666543 1222221 11 1 112344577
Q ss_pred CCchHHHHHHHHhhcCCCC-hh-hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCCHHHHH
Q 016128 197 GQPSWARRFFDQFEIKPDD-PA-FWNAMISGYGRNGEYESAVEIFDLMQQEKVKP---NSASFVAVLSACGHAGHVDKAL 271 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 271 (394)
|++++|+..|+++...+++ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 9999999999998876322 22 22335778999999999999999987653221 1344666777889999999999
Q ss_pred HHHHHchhcCC----------CCCC---HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCch
Q 016128 272 QIFTMMDDDFG----------LKPK---QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSD 335 (394)
Q Consensus 272 ~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~ 335 (394)
.+++.+..... -.|+ ...+..+...+...|++++|+++++++.. |+.. .+..++..+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999876410 0122 23455677889999999999999999876 7777 8999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 336 LGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+|++.++++.+..|+++..+..++..+.+.|++++|+.+++.+.+.
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-19 Score=168.41 Aligned_cols=331 Identities=11% Similarity=-0.022 Sum_probs=258.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL 126 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 126 (394)
.+......+.+.|++++|+..|++... .|+...|..+..+|.+.|++++|++.++...+.... +..+|..+..+|...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 345667788899999999999999776 678888999999999999999999999999987432 677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCC--------------------------------CCCHHHHHHHHHH-----------------
Q 016128 127 GMRFEAFKLFEKMQSTGM--------------------------------VPSLKCVTSVLSA----------------- 157 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~--------------------------------~~~~~~~~~l~~~----------------- 157 (394)
|++++|+..|......+. .|...........
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432110 0110111010000
Q ss_pred ----------------hhccchhhHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhh
Q 016128 158 ----------------CADLSALKLGKETHGHVIRAD-L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAF 218 (394)
Q Consensus 158 ----------------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 218 (394)
....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...|++.... |.....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 367 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS 367 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 011246788899999988765 2 234567788888899999999999999997665 555778
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 8899999999999999999999998864 336788889999999999999999999999863 3445677788889999
Q ss_pred hcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH-------HHHHhhcCCc
Q 016128 299 RSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL-------SNIYAGLGRW 368 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~ 368 (394)
+.|++++|+..|++... |+.. .++.+..++...|++++|+..|+++.++.|.+...+..+ ...+...|++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 99999999999998876 7666 899999999999999999999999999988654433221 1223346999
Q ss_pred ccHHHHHHHhhhcc
Q 016128 369 EDVGRIRQMINDRQ 382 (394)
Q Consensus 369 ~~a~~~~~~m~~~~ 382 (394)
++|.+++++.....
T Consensus 525 ~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 525 IEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=164.22 Aligned_cols=366 Identities=11% Similarity=0.021 Sum_probs=259.5
Q ss_pred CCCChHHHHHH-HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-cCChhHHHHHHHHhccCCChhHHHHH
Q 016128 7 DEPNSVTFISV-ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK-CGCLPCAHNVFQELKGSRNILTWNTM 84 (394)
Q Consensus 7 ~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l 84 (394)
..|+..+.... .+.|.+.|++++|++++..+.+.+ +.+......|..+|.. .++ +++..+++... +.+...+..+
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l-k~d~~l~~al 253 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI-FTDPQSRITY 253 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc-ccCHHHHHHH
Confidence 34446555555 888999999999999999999887 5555556666667776 366 77777765433 4567777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-C----------------------------------------------------
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFK-P---------------------------------------------------- 111 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~-p---------------------------------------------------- 111 (394)
...|.+.|+.++|.++++++...-.. |
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888888877776543211 1
Q ss_pred -----------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--------
Q 016128 112 -----------------------------------------DPATWNSMISGFSQLGMRFEAFKLFEKMQST-------- 142 (394)
Q Consensus 112 -----------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------- 142 (394)
+......+.-...+.|+.++|.++|+.....
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 1111111111223344444444444443220
Q ss_pred -------------------------------------------------------CC-CC--CHHHHHHHHHHhhccchh
Q 016128 143 -------------------------------------------------------GM-VP--SLKCVTSVLSACADLSAL 164 (394)
Q Consensus 143 -------------------------------------------------------~~-~~--~~~~~~~l~~~~~~~~~~ 164 (394)
+. ++ +...|..+..++.. +++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 00 11 33344444444444 556
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
++|...+.+..... |+......+...+...|++++|...|+++...+++...+..+...+.+.|+.++|...+++..+
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66777666665543 4443333445555688899999999988777666666677777888889999999999998887
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hH
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VY 321 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~ 321 (394)
.. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++... |+.. .+
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 64 223333334444445669999999999999853 56788899999999999999999999999987 7777 88
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.+..++...|+.++|+..++++.+..|.++..+..++.++...|++++|+..+++..+..
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999988653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-18 Score=163.91 Aligned_cols=341 Identities=11% Similarity=0.016 Sum_probs=262.8
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAG 87 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~ 87 (394)
+...+..+...+.+.|++++|.++++..++.. |.+...+..+..++...|++++|+..++++.. +.+.. +..+...
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 44568889999999999999999999998876 66677888899999999999999999999875 34556 8888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH--------------------------------
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL-------------------------------- 135 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~-------------------------------- 135 (394)
+...|+.++|+..++++.+.... +...+..+..++...|..++|+..
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999999999987443 555556666666666665544433
Q ss_pred --------------HHHHHhC-CCCCCHH-HHH----HHHHHhhccchhhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 016128 136 --------------FEKMQST-GMVPSLK-CVT----SVLSACADLSALKLGKETHGHVIRADLN-KDESMATALISMYM 194 (394)
Q Consensus 136 --------------~~~m~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 194 (394)
++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+ .....+..+|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHH
Confidence 3344322 1122211 111 1133455678999999999999887643 32 22333577899
Q ss_pred HcCCchHHHHHHHHhhcCCCC-----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-----------CCC---HhhHH
Q 016128 195 KCGQPSWARRFFDQFEIKPDD-----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-----------KPN---SASFV 255 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~ 255 (394)
..|++++|+..|+++...++. ......+..++...|++++|..+++.+..... .|+ ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 999999999999998665332 23456677788999999999999999987531 123 23456
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.+...+...|+.++|++.++++.. ..+.+...+..+...+...|++++|++.+++... |+.. .+...+..+...|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 677888999999999999999986 4456678889999999999999999999999987 8777 7778888899999
Q ss_pred CchHHHHHHHHHHhhCCCCCchHH
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
++++|+..++++.+..|+++.+..
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999875543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-17 Score=155.12 Aligned_cols=354 Identities=13% Similarity=0.049 Sum_probs=256.5
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHhcCChhHHHHHHHHhccCC-ChhHHHHH--HHHHHhcCCHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSD-TMIGTALVDMYLKCGCLPCAHNVFQELKGSR-NILTWNTM--IAGMMLNGRSEK 96 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l--l~~~~~~~~~~~ 96 (394)
..+.|+++.|++.|++.++.. +.+ ..++ .++..+...|+.++|+..+++.. .| +...+..+ ...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 458899999999999999876 333 2344 88888999999999999999998 44 33344444 567888899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
|+++|+++.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998544 5677778888999999999999999999875 45656665555555556666669999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhh----------------------------------------------
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFE---------------------------------------------- 210 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------------------------------------- 210 (394)
.. +.+...+..+..++.+.|-...|.++..+-+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 3356666667777777666555555444211
Q ss_pred --cC-CCCh---hhH-H---HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 211 --IK-PDDP---AFW-N---AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 211 --~~-~~~~---~~~-~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
.. +.++ ..| . -.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 10 1111 111 1 123456677888888888888888776555567778888888888888888888887654
Q ss_pred CC----CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C-------------Chh---hHHHHHHHHHhcCCchHHH
Q 016128 281 FG----LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P-------------TVS---VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 281 ~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-------------~~~---~~~~l~~~~~~~g~~~~a~ 338 (394)
.+ .+++......|.-+|...+++++|..+++++.+ | +.. .+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 21 122333456778888888888888888887765 2 111 3344566677788888888
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+.++++....|.|+.....++.++...|.+.+|++.++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888888888766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-16 Score=148.80 Aligned_cols=370 Identities=11% Similarity=0.022 Sum_probs=264.9
Q ss_pred CCCCh--HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHH
Q 016128 7 DEPNS--VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWN 82 (394)
Q Consensus 7 ~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 82 (394)
..|+. ..+ .++..+...|+.++|+..+++..... +........+...+...|++++|+++|+++.. +.+...+.
T Consensus 63 ~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~ 140 (822)
T PRK14574 63 AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLIS 140 (822)
T ss_pred hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45554 233 77777778888888888888877211 22333334446677788888888888888776 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 7778888888888888888888776 5555555444444545566666888888887763 224444444454444433
Q ss_pred hhhHH------------------------------------------------HHHHHHHHHc-CCCCCH-HHH----HH
Q 016128 163 ALKLG------------------------------------------------KETHGHVIRA-DLNKDE-SMA----TA 188 (394)
Q Consensus 163 ~~~~a------------------------------------------------~~~~~~~~~~-~~~~~~-~~~----~~ 188 (394)
-...| +.-++.+... +..|.. ..| .-
T Consensus 218 ~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 218 IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 33222 2222332221 111221 111 22
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcCCC--ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-----CCCHhhHHHHHHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIKPD--DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-----KPNSASFVAVLSAC 261 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 261 (394)
-+-++...|++.++++.|+.+...+. ...+-..+.++|...+++++|+.+|+++..... .++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 34567788999999999999987643 334457788999999999999999999976531 22334457889999
Q ss_pred HccCCHHHHHHHHHHchhcCCC----------CCCH---hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGL----------KPKQ---EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLL 325 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~ 325 (394)
...+++++|..+++.+.+.... .|++ ..+..++..+...|+..+|++.++++.. |... ....+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999873110 1221 2344567788999999999999999987 8777 999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+...|.+.+|++.++.+...+|.+..+....+.++...|+|++|..+.+.+...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998777553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-16 Score=151.55 Aligned_cols=351 Identities=11% Similarity=0.023 Sum_probs=267.7
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC----ChhHHHHHHHHHHhcCC---HH
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR----NILTWNTMIAGMMLNGR---SE 95 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~---~~ 95 (394)
.+...++.+.+..|.+.. +-+....-.+.-...+.|+.++|.++|+.... ++ +....+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355666666666666553 44555555666667788999999999998765 22 22344466777776655 33
Q ss_pred HHHHH----------------------HHHHHhc-CC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 016128 96 KAMEL----------------------FEGLAHE-GF-KP--DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 96 ~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 149 (394)
++..+ .+..... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 2222221 11 33 57788888888877 8899999988887765 36655
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhh
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGR 228 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~ 228 (394)
....+...+...|++++|...++++... .|+...+..+..++.+.|+.++|...+++.... |.....+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 5445556667899999999999998665 334445567788899999999999999998765 3333333444444556
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (394)
.|++++|...+++..+. .|+...+..+...+.+.|+.++|+..++..... -+.+...+..+..++...|++++|+.
T Consensus 589 ~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 589 PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999999886 467888999999999999999999999999863 34456778888889999999999999
Q ss_pred HHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 309 LIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 309 ~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
.+++..+ |+.. .+..+..++...|++++|+..++++.+..|++..+....+....+..+++.|.+-+++....++.
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999886 7777 99999999999999999999999999999999999999999999999999999988887665443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-16 Score=138.90 Aligned_cols=331 Identities=16% Similarity=0.140 Sum_probs=230.7
Q ss_pred HhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 016128 57 LKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 134 (394)
...|++++|.+++.++.. +.+...|.+|...|-+.|+.+++...+-..-..... |...|..+.....+.|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 334777777777777654 445666777777777777777777665444443322 56677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCchHHHHHHHHhh
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA----LISMYMKCGQPSWARRFFDQFE 210 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~ 210 (394)
.|.+.++.. +++...+---+..|-+.|+...|...+.++.....+.|..-+.. .++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777653 44555555566667777777777777777776654333333322 3445556666677777777654
Q ss_pred cC---CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC---------------------------CCCCHhhHHHHHHH
Q 016128 211 IK---PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK---------------------------VKPNSASFVAVLSA 260 (394)
Q Consensus 211 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~ 260 (394)
.. ..+...++.++..+.+..+++.+......+.... ..++... ..+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 43 2334446777778888888888877777766511 2222222 122233
Q ss_pred HHccCCHHHHHHHHHHchhcCC--CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CChhhHHHHHHHHHhcCCc
Q 016128 261 CGHAGHVDKALQIFTMMDDDFG--LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PTVSVYHSLLGACWCHLNS 334 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 334 (394)
+...+..+....+....... . ..-+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455555555555555554 4 344577899999999999999999999999987 2333899999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCC
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISA 391 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 391 (394)
++|++.|++++...|.+..+...|...+.+.|+.++|.+.++.+..-+-..-+++.|
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999987433333355555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=150.14 Aligned_cols=259 Identities=18% Similarity=0.223 Sum_probs=112.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 118 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
.+...+.+.|++++|++++++......+|+ ...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 457778888999999998866544432333 344445556667788899999999988877643 56667777777 688
Q ss_pred CCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 197 GQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
+++++|.++++..-...+++..+..++..+...++++++.++++.+.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988765555777778888999999999999999999987543 34577788888899999999999999999
Q ss_pred HchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 276 MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTV-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+..+. .+.|......++..+...|+.+++.++++.... |+. ..+..+..++...|++++|+..++++.+..|.|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99863 233577888999999999999998888777655 333 4888999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.....++.++...|+.++|.++.+++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-15 Score=123.75 Aligned_cols=173 Identities=18% Similarity=0.122 Sum_probs=97.0
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc--CC-------------------------hhHHHHHHHHhcc
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC--GC-------------------------LPCAHNVFQELKG 74 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-------------------------~~~A~~~~~~~~~ 74 (394)
..+|.++.+--+|+.|.+.|.+.+..+-..|++..+-. .+ -+-|. ++-+..
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~- 203 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETL- 203 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhc-
Confidence 34566677777777777766665555544444432211 10 01111 222222
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 154 (394)
+.+..+|.++|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. .-.++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 3445566666666666666666666666666655555666666666543321 125556666666666666666666
Q ss_pred HHHhhccchhhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 155 LSACADLSALKL----GKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 155 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 666666665543 3455556666666666666666666666555553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-15 Score=124.64 Aligned_cols=339 Identities=12% Similarity=0.131 Sum_probs=248.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSM 119 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 119 (394)
|.+..++..+|.++++....+.|.+++++... +.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 56778999999999999999999999998875 4677889988866543322 7899999999999999999999
Q ss_pred HHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH-HHHHHHHHHH----cCCC----CCHHHH
Q 016128 120 ISGFSQLGMRFE----AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL-GKETHGHVIR----ADLN----KDESMA 186 (394)
Q Consensus 120 ~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 186 (394)
+.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..+. .+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998865 56778889999999999999999999999888754 4444444432 2222 245666
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcC------CCCh---hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 187 TALISMYMKCGQPSWARRFFDQFEIK------PDDP---AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
...+..|.+..+.+-|.++-.-+... +++. ..|..+....++....+.....|+.|.-.-+.|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77788888888988888887765443 3332 23677888889999999999999999988888999999999
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC-c--------HHH-----HHHHH-------HhCCC-
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG-R--------LDE-----ARELI-------RELPE- 315 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------~~~-----a~~~~-------~~~~~- 315 (394)
+++....|.++-.-++|..+..- |..........+...+++.. . +.. |..++ .++..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999888888887654 54333333333444443322 0 000 11111 11222
Q ss_pred -CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC---CCCC--chHHHHHHHHhhcCCcccHHHHHHHhhhcccccc
Q 016128 316 -PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME---PENP--TPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKL 386 (394)
Q Consensus 316 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 386 (394)
-.....+.++..+.+.|..++|.+++..+...+ |..| .+...+.+.-.+.++...|..+++-|...+...-
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 222266677777889999999999999886644 4333 2344566667778889999999999977666443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-14 Score=127.54 Aligned_cols=280 Identities=11% Similarity=0.012 Sum_probs=193.1
Q ss_pred cCChhHHHHHHHHhccC-CChhH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHccCCHHHHHH
Q 016128 59 CGCLPCAHNVFQELKGS-RNILT-WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWN--SMISGFSQLGMRFEAFK 134 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~-~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~ 134 (394)
.|+++.|++.+...... +++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58999999888876642 22333 333344457889999999999988875 44543322 33667888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCchHHHHHHH
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-------MATALISMYMKCGQPSWARRFFD 207 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~ 207 (394)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999888764 3356777888888888999999999999888876543221 22233333334444556666666
Q ss_pred HhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC
Q 016128 208 QFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK 286 (394)
Q Consensus 208 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (394)
.+... +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 66443 556777777888888888888888888877763 4444322 22333445778888888777765 34455
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
+..+..+.+.+.+.|++++|.+.|+...+ |+...+..+..++.+.|+.++|.+++++...+
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677777888888888888888887776 66667777778888888888888888777654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-14 Score=123.58 Aligned_cols=370 Identities=12% Similarity=0.083 Sum_probs=298.0
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHH
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMM 89 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~ 89 (394)
.||..-.+.|.+.+.++-|+.+|...++.. +-+..+|......--..|..+.-..+|++... +.....|-...+.+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 567777778888888888888888888654 66777888877777778888888888888775 345566777777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHH
Q 016128 90 LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKE 169 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 169 (394)
..|+...|..++....+.... +...|-.-+.....+.++++|..+|.+.... .|+...|.--+...--.+..++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999888887444 6778888888888899999999999888764 5677777766666667788899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
++++.++.- +.-...|..+...+-+.++.+.|...|..=... |..+..|-.|...--+.|+.-.|..++++..-.+..
T Consensus 673 llEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 673 LLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 998887763 334567777888888888999998888775554 666777888888888888999999999998877644
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGAC 328 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 328 (394)
+...|...|+.-.+.|..+.|..+..+..+ .++.+...|..-|....+.++--.....+++.. .|..+.-.+...+
T Consensus 752 -~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lf 827 (913)
T KOG0495|consen 752 -NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLF 827 (913)
T ss_pred -cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHH
Confidence 778888889988999999999999888877 666777788887877777777667777776665 4555777778888
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCC
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAG 392 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 392 (394)
....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.+++++.... .|..|..|.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~ 889 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHH
Confidence 88999999999999999999999999999999999999999999999888754 566676664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-15 Score=135.80 Aligned_cols=364 Identities=15% Similarity=0.139 Sum_probs=205.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
|-.+.+++-..|+++.|...|-+..+.........+--+..++.+.|+++.+...|+++.. +.+..+...|...|+..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 4445555556666666666665555444221233444555666666666666666666543 23334444444555444
Q ss_pred C----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHhhccch
Q 016128 92 G----RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM----QSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 92 ~----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+ ..+.|..++.+..+.- +.|...|-.+...+....-+. ++.+|... ...+-.+.+...|.+...+...|+
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 3 3344444444444332 124555555555444433222 24444432 233334555666666666666777
Q ss_pred hhHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHhhcC----------------------
Q 016128 164 LKLGKETHGHVIRA---DLNKD------ESMATALISMYMKCGQPSWARRFFDQFEIK---------------------- 212 (394)
Q Consensus 164 ~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------- 212 (394)
++.|...|...... ...++ .++-..+..++-..++.+.|.+.|..+...
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcH
Confidence 77777666666543 11111 112222444444455555555555554432
Q ss_pred -------------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHhhHHHHHHHHHc------------cCC
Q 016128 213 -------------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVKPNSASFVAVLSACGH------------AGH 266 (394)
Q Consensus 213 -------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~ 266 (394)
..++..++.+...+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 223333444444444444444444444333322 112455555555554432 234
Q ss_pred HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P-TVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
.++|+++|.++.+ .-+.+...-|.+.-.++..|++.+|..+|.++.+ . ...+|-.+..+|...|++-.|++.|+.
T Consensus 628 ~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777775 3445666777777778888888888888888877 2 223888888888888888888888888
Q ss_pred HHhhC--CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 344 LQEME--PENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 344 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+.. .+++.+...|+.++.+.|++.+|.+.+......
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 87744 456677888888888888888888877766654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-14 Score=119.60 Aligned_cols=358 Identities=15% Similarity=0.141 Sum_probs=218.5
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
.++++..|+.+|+..+..+ ..+...|-..+.+-.++..+..|..++++... -|- ...|--.+..--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456666777777766554 44555555555555555555555555555432 111 12222222222334455555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh----------------
Q 016128 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL---------------- 164 (394)
Q Consensus 101 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---------------- 164 (394)
|++-.+- .|+..+|++.++.-.+.+..+.|..+|++.+- +.|+..+|--....-.+.|..
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 5544443 44555555555555555555555555554443 234444444444444444444
Q ss_pred ---------------------hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCchHHHHHH--------H-HhhcCC
Q 016128 165 ---------------------KLGKETHGHVIRADLNK-DESMATALISMYMKCGQPSWARRFF--------D-QFEIKP 213 (394)
Q Consensus 165 ---------------------~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~--------~-~~~~~~ 213 (394)
+.|.-+|+-.++.-... ....|..+...--+.|+.....+.. + .+..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 44444444444331111 1233333333333334433332221 1 233447
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh--hHHHH----HH-HH---HccCCHHHHHHHHHHchhcCCC
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA--SFVAV----LS-AC---GHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l----~~-~~---~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
.|-++|--.+..-...|+.+...++|++.... ++|-.. .|... |+ +| ....+.+.+.++++...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 78888888888888899999999999999875 455321 11111 11 11 356788999999998886 44
Q ss_pred CCCHhhHHHHHH----HHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 284 KPKQEHFGCMVD----LLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 284 ~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
+....||..+-- .-.++.+...|.+++...+. |...+|...|..-.+.++++.+..+|++.++.+|.+..+|..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 445556655433 33578899999999998887 888899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcccHHHHHHHhhhccccccCC
Q 016128 358 LSNIYAGLGRWEDVGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 358 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 388 (394)
.+..-...|+++.|..+|+.+.+...-.-|.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999999988765433333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=125.82 Aligned_cols=343 Identities=13% Similarity=0.078 Sum_probs=242.0
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHHHhcCCHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSD----TMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~ 95 (394)
+.+.+++..|+++|+..+..-...+ ..+.+.+.-.+.+.|.+++|+..|+...+ .|+..+--.|+-++..-|+-+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHH
Confidence 4456677777777776665432222 23445555567778999999999988654 677766444555555678888
Q ss_pred HHHHHHHHHHhcCCCC------------C---------------------------------------------------
Q 016128 96 KAMELFEGLAHEGFKP------------D--------------------------------------------------- 112 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p------------~--------------------------------------------------- 112 (394)
+..+.|.+|..-...| +
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 8888888887642222 0
Q ss_pred ----HHHHHH--------HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---------------------HHHHHH----
Q 016128 113 ----PATWNS--------MISGFSQLGMRFEAFKLFEKMQSTGMVPSLK---------------------CVTSVL---- 155 (394)
Q Consensus 113 ----~~~~~~--------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------------------~~~~l~---- 155 (394)
...+.- -..-|.++|+++.|++++.-+.+..-..-.. .|....
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 000000 0123567788888888877665432111111 111000
Q ss_pred -----------HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHH
Q 016128 156 -----------SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMI 223 (394)
Q Consensus 156 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~ 223 (394)
+.....|++++|.+.+++.+..+.......|+ +.-.+-..|+.++|+.+|-++... ..+......+.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qia 565 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIA 565 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 01112577888888888887765444444444 334566778899999988776433 34666677788
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcH
Q 016128 224 SGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303 (394)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (394)
..|-...+...|++++-+.... ++.|+..++.|...|-+.|+-.+|.+.+-.--+ -++.+..+..-|...|....-+
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHH
Confidence 8888899999999999877654 556888999999999999999999887766544 5667888889999999999999
Q ss_pred HHHHHHHHhCC--CCChhhHHHHHHHH-HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 304 DEARELIRELP--EPTVSVYHSLLGAC-WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 304 ~~a~~~~~~~~--~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
++++.+|++.. .|+..-|..++..| .+.|++++|.++|+......|.+..++..|++.+...|-
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999765 49999998888655 568999999999999999999999999999999887764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-15 Score=132.73 Aligned_cols=355 Identities=14% Similarity=0.117 Sum_probs=243.0
Q ss_pred CCCCChHHH--HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC----ChhHHHHHHHHhcc--CCC
Q 016128 6 SDEPNSVTF--ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG----CLPCAHNVFQELKG--SRN 77 (394)
Q Consensus 6 g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~--~~~ 77 (394)
+..|+.+++ --|.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+... +.|
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 445555333 346677888999999999999988876 667778888888887775 56677777776654 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCC-----
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLA----HEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST---GMV----- 145 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~----- 145 (394)
...|-.+...+-...-+. ++..|.... ..+-.+.+...|.+...+...|++++|...|.+.... ...
T Consensus 414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 666666666655443333 355554433 3444566777777777777778888777777776543 111
Q ss_pred -CCHHHHHHHHHHhhccchhhHHHHHHHHHHHcC---------------------------------CCCCHHHHHHHHH
Q 016128 146 -PSLKCVTSVLSACADLSALKLGKETHGHVIRAD---------------------------------LNKDESMATALIS 191 (394)
Q Consensus 146 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~ 191 (394)
++..+--.+..+.-..++.+.|.+.|..+.+.. ...++..+..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 121122223333334445555555555444321 1234455555566
Q ss_pred HHHHcCCchHHHHHHHHhhcCC---CChhhHHHHHHHHhh------------cCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIKP---DDPAFWNAMISGYGR------------NGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.+.+..++..|.+-|+.+...+ +|+.+.-.|.+.|.+ .+..++|+.+|.+.++.... |...-+-
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 6666667777777666654441 233333444554432 34578899999999887533 7788888
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CChh-hHHHHHHHHHhc
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~ 331 (394)
+...++..|++..|..+|.+..+. ......+|-.+..+|..+|++..|+++|+...+ .+.. +...|.+++.+.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 888999999999999999999874 334556888899999999999999999998765 3444 999999999999
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
|++.+|.+.+..+....|.++.....++.+..+.
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 9999999999999999999998877777766554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-14 Score=127.27 Aligned_cols=281 Identities=10% Similarity=0.040 Sum_probs=215.8
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHH-HHHHHhcCChhHHHHHHHHhcc-CCChhHHH--HHHHHHHhcCCHHHHHH
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTAL-VDMYLKCGCLPCAHNVFQELKG-SRNILTWN--TMIAGMMLNGRSEKAME 99 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~--~ll~~~~~~~~~~~a~~ 99 (394)
.|+++.|.+......+.. +++..+..+ .....+.|+++.|...+.++.+ .|+...+. .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 478888887777654432 233333333 4445789999999999999876 45554333 33678889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHhhccchhhHHHHHHH
Q 016128 100 LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK-------CVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 100 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
.++++.+.... ++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988644 78889999999999999999999999999876543221 22333333334445555666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh
Q 016128 173 HVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
.+-+. .+.++.....+...+...|+.++|.+.+++..+.++++.. .++.+....++.+++++..+...+... -|..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~ 329 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPL 329 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHH
Confidence 65333 2457888889999999999999999999998876666533 234444566999999999999988743 3667
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
.+..+...|...+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999999999999985 47999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=139.76 Aligned_cols=255 Identities=20% Similarity=0.217 Sum_probs=64.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS 94 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~ 94 (394)
...+.+.|+++.|.++++...... .+.+...|..+.......++++.|+..++++.. +.+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444555555555555554333222 233444444444455555555555555555543 1223334444444 455555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccchhhHHHHHHHH
Q 016128 95 EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-MVPSLKCVTSVLSACADLSALKLGKETHGH 173 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 173 (394)
++|.++++...+. .+++..+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544433 2344444455555555555555555555544321 223444444555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh
Q 016128 174 VIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
..+..+ .+..+...++..+...|+.+++..+++..... +.++..|..+..++...|+.++|+..|++..+.. +.|+.
T Consensus 172 al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 555431 13444444555555555555544444444333 3444444555555555555555555555554432 22444
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
....+..++...|+.++|..+.+++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4445555555555555555544443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-14 Score=123.34 Aligned_cols=285 Identities=11% Similarity=-0.015 Sum_probs=199.9
Q ss_pred HhcCChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 016128 57 LKCGCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFK 134 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 134 (394)
...|+++.|.+.+.+... .|+. ..+-....++.+.|+++.|.+.+++..+....+...........+...|++++|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456999999999988765 3443 33444467778889999999999998776323222344445788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCch----HHHHHHH
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY---MKCGQPS----WARRFFD 207 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~----~a~~~~~ 207 (394)
.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+ ...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 3366778889999999999999999999999887543332211111221 2222222 3333333
Q ss_pred HhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh--H-HHHHHHHHccCCHHHHHHHHHHchhcCCC
Q 016128 208 QFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS--F-VAVLSACGHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 208 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
..... +.++..+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+. .
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 33321 3477888888999999999999999999998863 34332 1 11112223457788888888877763 2
Q ss_pred CCCH--hhHHHHHHHHHhcCcHHHHHHHHH--hCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 284 KPKQ--EHFGCMVDLLGRSGRLDEARELIR--ELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 284 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
+-|+ ....++...+.+.|++++|.+.|+ ...+ |+...+..+...+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334 566788888889999999999998 3432 7777777888888999999999999888755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-13 Score=116.35 Aligned_cols=367 Identities=12% Similarity=0.032 Sum_probs=276.5
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-------CCChhHHHHHHHHHHh
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-------SRNILTWNTMIAGMML 90 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~ll~~~~~ 90 (394)
.-++++..-++.|..++....+. ++-+..+|.+-...--..|+.+...+++++-.. .-+...|-.=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 33455556666666666665543 355666666666666666666666666665332 1234445555555556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPD--PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
.|..-.+..+......-|+.-. ..||..-...|.+.+.++-|..+|....+. ++-+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 6666666666666666655432 446777777777778888888888777765 3345556666666666777788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 016128 169 ETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (394)
.+++++...- +.....+......+-..|+...|..++.+.-.. |.+...|-.-+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 8888887764 335566666777778889999999999886554 667778999999999999999999999998774
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHH
Q 016128 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSL 324 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l 324 (394)
.|+...|..-+..-.-.+..++|.+++++..+ .++.-...|-.+...+.+.++.+.|.+.|..-.. |+.. .|-.|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 67788887777777778999999999999987 4444567888889999999999999999988877 7777 88888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCCC
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAGI 393 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 393 (394)
...--+.|+.-+|..++++..-.+|.+...|...+.+-.+.|..+.|..++.+.... -|+.|.-|.+
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaE 792 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAE 792 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHH
Confidence 888888999999999999999999999999999999999999999999998887764 3666766653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-15 Score=124.50 Aligned_cols=360 Identities=12% Similarity=0.078 Sum_probs=253.9
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHh
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSD-TMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMML 90 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~ 90 (394)
+-..-..|.++|.+++|++.|.+.++. .|+ +.-|.....+|...|+|+++.+.-.+..+ .|+ +..+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344455688899999999999999976 455 88889999999999999999888777664 333 2334444455555
Q ss_pred cCCHHHHH----------------------HHHHHH---------Hhc--CCCCCHHHHHHHHHHHHc------------
Q 016128 91 NGRSEKAM----------------------ELFEGL---------AHE--GFKPDPATWNSMISGFSQ------------ 125 (394)
Q Consensus 91 ~~~~~~a~----------------------~~~~~m---------~~~--g~~p~~~~~~~l~~~~~~------------ 125 (394)
.|++++|+ ++++.. .+. .+-|+.....+....+..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 55555443 222211 111 122333333333222211
Q ss_pred -------------cC---CHHHHHHHHHHHHh-CCCCCC-----------HHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 126 -------------LG---MRFEAFKLFEKMQS-TGMVPS-----------LKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 126 -------------~~---~~~~a~~~~~~m~~-~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
.+ .+..|.+.+.+-.. ....++ ..+.......+.-.|+.-.+.+-|+..++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 12222222222110 001111 112222222344568888999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
...++. .|-.+..+|....+.++-.+.|...... |.++++|..-...+.-.+++++|..=|++...... -+...|..
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQ 433 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHH
Confidence 755433 3667778899999999999999987765 78899999999999999999999999999988642 25667777
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh---------hHHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS---------VYHSLL 325 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~---------~~~~l~ 325 (394)
+..+..+.+++++++..|++.++ .++..+.+|+.....+...++++.|.+.|+..++ |+.. +.-.++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 77777889999999999999987 6777889999999999999999999999998876 4411 122222
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
..- -.+++..|+.+++++.+++|....+|..|+....+.|+.++|+++|++-..
T Consensus 512 ~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 512 VLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 248999999999999999999999999999999999999999999987543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-14 Score=125.69 Aligned_cols=286 Identities=9% Similarity=-0.005 Sum_probs=211.2
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCch-HHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChh--HHHHHHHHHHhcCCHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDT-MIGTALVDMYLKCGCLPCAHNVFQELKG-SRNIL--TWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~ll~~~~~~~~~~~a~ 98 (394)
..|+++.|.+.+....+.. |++ ..+-....+..+.|+.+.|.+.+.+..+ .|+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4689999999998776653 443 3344556778888999999999999754 35543 3444588889999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHh---hccchhhHHHHHHHHH
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT-SVLSAC---ADLSALKLGKETHGHV 174 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 174 (394)
..++.+.+..+. +..++..+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..+...+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998643 6788899999999999999999999999988654 333332 222222 2223333334455555
Q ss_pred HHcCC---CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChh-h--HHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 175 IRADL---NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA-F--WNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 175 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
.+... +.+...+..+...+...|+.++|.+.+++..+..++.. . ...........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 54432 13788899999999999999999999999877533333 1 1222222344578888999998887763 2
Q ss_pred CCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 249 PNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 249 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
-|+ ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244 55668899999999999999999953332 557899889999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-14 Score=116.13 Aligned_cols=288 Identities=13% Similarity=0.067 Sum_probs=207.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhhccchh
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM--VPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~ 164 (394)
++-...+.++++.=.+.....|+.-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-.....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444455666666666666667665555555555666677788888888888876621 12455666555443222221
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
. .+.+-...--+--+.|...+.+-|.-.++.++|..+|++..+. |.....|+.+..-|...++...|++-++...
T Consensus 316 s----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 316 S----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred H----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1 1111111111224556677778888889999999999987665 5556669999999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-CCh--hh
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-PTV--SV 320 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~--~~ 320 (394)
+-. +.|-..|-.|.++|...+-..=|.-+|++... --+.|+..|.+|..+|.+.++.++|++.|.+... .|. ..
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 875 34888999999999999999999999999875 3455788999999999999999999999999887 333 38
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhh-------CCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEM-------EPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+..|...+-+.++.++|...|++.++. +|....+..-|+.-+.+.+++++|..........
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999999999999999988872 2333344455677778888888887766555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-13 Score=121.78 Aligned_cols=368 Identities=11% Similarity=0.051 Sum_probs=279.0
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
|.....-.....+...|+++.|.+++.++++.. +.....|..|...|-+.|+.+++...+-.... +.|...|..+..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 334444444444555699999999999999988 77889999999999999999999988876543 567788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHhhccc
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT----SVLSACADLS 162 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~ 162 (394)
...+.|.+++|.-.|.+.++... ++...+-.-+..|-+.|+...|...|.++.....+.|..-+. ..+..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999743 355555666788999999999999999998864322333233 3455566677
Q ss_pred hhhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-----------------C-----------
Q 016128 163 ALKLGKETHGHVIRA-DLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-----------------P----------- 213 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------~----------- 213 (394)
+-+.|.+.++..... +-..+...++.++..+.+..+++.|.......... +
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 778888888887662 22345667788899999999999988877665441 0
Q ss_pred -CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhH
Q 016128 214 -DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV--KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF 290 (394)
Q Consensus 214 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (394)
.+... -.+.-++...+..+....+.....+..+ .-+...|.-+..++...|.+.+|+.+|..+... ..-.+..+|
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw 452 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVW 452 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhh
Confidence 01111 1233445566666666666777777663 335567889999999999999999999999876 334457789
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC---------CCCCchHHHH
Q 016128 291 GCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME---------PENPTPFVIL 358 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~l 358 (394)
..+.++|...|.+++|.+.|+.... |+.. .--.|...+.+.|+.++|.+.++.+..-+ +++.......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 9999999999999999999999887 7777 77788888999999999999998865322 2233445566
Q ss_pred HHHHhhcCCcccHHHHHHHhhh
Q 016128 359 SNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...+.+.|+.++-+.....|.+
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 6778888998886666665554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-13 Score=114.87 Aligned_cols=326 Identities=14% Similarity=0.083 Sum_probs=242.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW--NSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~l~ 120 (394)
..|...+-.....+-+.|..+.|+..|..... .-+..|.+.+...--..+.+.+..+ .. |...|.... -.+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHHH
Confidence 44555555555666778899999999988773 2233344333333222333332222 21 122121111 2244
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN--KDESMATALISMYMKCGQ 198 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 198 (394)
.++....+.++++.-.+.....|++-+...-+....+.....|+++|+.+|+++.+.++- .|..+|..++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 566666788888888888888888766666666667778889999999999999987421 266777766543222111
Q ss_pred chH-HHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 199 PSW-ARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 199 ~~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
..- |..++ .+. .-.+.|...+.+-|.-.++.++|+..|++..+.+.. ....|+.+.+-|....+...|+.-++..
T Consensus 315 Ls~LA~~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111 11111 122 356677788888899999999999999999987533 5677888899999999999999999999
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.+ -.+.|-..|-.|.++|.-.+.+.-|+-+|++... |++. .|.+|..+|.+.++.++|+..|.++...+..+...
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 4466788999999999999999999999999987 7777 99999999999999999999999999999888899
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 355 FVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+..|+.+|.+.++.++|...+++..+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=126.13 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
.+.+|.++.++|.-.++.+.|++.|++..+. |....+|+.+..-+.....+|.|...|+..+....+ +-..|.-+...
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v 498 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV 498 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh
Confidence 3444555555555555555555555544433 223334444444444455555555555444332111 12233334444
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDL 336 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 336 (394)
|.+.++++.|+-.|+.+.+ +.| +......+...+.+.|+.++|++++++... |... .--..+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 4555555555555554442 222 233334444444455555555555554443 2222 22223333444455555
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 337 GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
|+..++++++.-|.+...+..++..|.+.|+.+.|+.-|--|.
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 5555555555555555555555555555555555554444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-12 Score=112.16 Aligned_cols=251 Identities=13% Similarity=0.028 Sum_probs=167.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARR 204 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (394)
..+++.+..++++...+. .++....+..-|.++...|+..+-..+-.++++.- +..+.+|-++.-.|...|+.++|++
T Consensus 256 ~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHH
Confidence 334444444444444433 12333333333444444444444444444444432 2244555555656666677777777
Q ss_pred HHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCC
Q 016128 205 FFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 205 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
+|.+...- +.-...|-.+...|+-.|..++|+..+...-+.- +-....+--+.--|.+.++.+.|.++|.+... -.
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~ 410 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IA 410 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cC
Confidence 77665443 2223446677777777777777777766665531 11112222334456677888888888888874 34
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIRELPE---------P-TVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+.|+.+.+.+.-.....+.+.+|..+|+.... + -.++++.|..++.+.+.+++|+..+++++.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 55677888888777788999999999987763 2 2237999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
++.+++-.|...|+++.|+..|.+...
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999998764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-12 Score=107.86 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=204.0
Q ss_pred cCChhHHHHHHHHhccCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 016128 59 CGCLPCAHNVFQELKGSR--NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 136 (394)
.|++.+|+++..+-.+.. ....|..-..+.-+.|+.+.+-.++.+..+....++....-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 588899988888766532 233455555666778888999888888888755556677777778888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 137 EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-------MATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 137 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
.++.+.+ +-+........++|.+.|++.....++..+.+.+.-.+.. ++..++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888765 3356677888888889999999999999888888665543 3444555444444555555566666
Q ss_pred hcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 210 EIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 210 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
+.. ..++..-..++.-+.+.|+.++|.++..+..+.+..|. ... .-.+.+.++.+.-++..+.-.+. .+.++.
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ--HPEDPL 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh--CCCChh
Confidence 555 44566677778888888888888888888887766555 222 22445667777777777666653 333446
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
.+.+|...|.+.+.|.+|...|+...+ |+..+|+.+..++.+.|++.+|.+..++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 778888888888888888888887766 66668888888888888888888888877653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-13 Score=107.03 Aligned_cols=284 Identities=11% Similarity=0.101 Sum_probs=163.6
Q ss_pred cCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCHHHHH
Q 016128 59 CGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD---PATWNSMISGFSQLGMRFEAF 133 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~ 133 (394)
+++.++|.++|-+|.. +.+..+--+|.+.|-+.|..|.|+++-+.+.+..--+. ..+...|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4666677777766663 12223344566666667777777777666665411111 223344556666677777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD----ESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
.+|..+.+.+ .--......|+..|-...+|++|.++-+++.+.+..+. ...|.-|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777766643 22344556666777777777777777776666554332 234555666666667777777777765
Q ss_pred hcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 210 EIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 210 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
.+. |..+..--.+.+.+...|+++.|++.++...+++..--+.+...|..+|...|+.++...++..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 543 33333333455666777777777777777777655545566667777777777777777777776654 23333
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHH-hCCC-CChhhHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 016128 289 HFGCMVDLLGRSGRLDEARELIR-ELPE-PTVSVYHSLLGACWC---HLNSDLGEEMAMKLQE 346 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~-~~~~-~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 346 (394)
.-..+.+.-....-.+.|...+. ++.. |+...+..++..-.. .|...+....++.+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33334343333334444444443 3333 555566666655443 2334444455555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=125.48 Aligned_cols=285 Identities=16% Similarity=0.041 Sum_probs=205.7
Q ss_pred CChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 016128 60 GCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGF--KPDPATWNSMISGFSQLGMRFEAFKL 135 (394)
Q Consensus 60 g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~ 135 (394)
-+..+|..+|.+++. .+|. .....+..+|...+++++|.++|+.+.+... .-+...|.+.+-.+-+. -++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356788888888664 2333 4445567888888888888888888877521 11677777776554321 12222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-C
Q 016128 136 F-EKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-P 213 (394)
Q Consensus 136 ~-~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~ 213 (394)
+ +.+.+. -+-.+.+|.++.++|.-+++.+.|.+.|++.+..+. ....+|+.+.+-+.....+|.|...|+..... |
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233332 244567888888888888899999988888887652 26778888888888888888888888886653 4
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHH
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCM 293 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (394)
++-..|--+.-.|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.|+|+.+++++..- -+.|+-.--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 44555666777888888899998888888876533 5666777777888888888998888888743 12233333444
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 294 VDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+..+...+++++|+..++++.+ |+.. ++..+...|.+.|+.+.|+.-|.-+.+++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5667778888899888888887 7777 8888888888888888888888888888876544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-13 Score=106.75 Aligned_cols=293 Identities=12% Similarity=0.103 Sum_probs=221.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHhhccchhhHH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-MVPSL--KCVTSVLSACADLSALKLG 167 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a 167 (394)
+++.++|.++|-+|.+.... +..+.-+|.+.|.+.|..++|+++.+.+.++. .+-+. .....|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999986322 45556678899999999999999999998752 21111 2344566778899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCCh------hhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDP------AFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+..+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988652 345667789999999999999999999887653322 2366677777788999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh
Q 016128 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS 319 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~ 319 (394)
..+.+.+ ....-..+.+.....|+++.|.+.++.+.++ +...-+.+...|..+|...|+.++....+.++.+ ++..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 9887533 3444456778889999999999999999987 5555567888999999999999999999998887 4444
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh---cCCcccHHHHHHHhhhccccccCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG---LGRWEDVGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 388 (394)
.-..+...-....-.+.|...+.+-+...| +...+..++..... .|.+.+.+..++.|....++.+|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 555555554555556777777777666667 55667777776553 355777788888888766655553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-13 Score=112.36 Aligned_cols=365 Identities=12% Similarity=0.091 Sum_probs=220.7
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHH-HHHHHHHHhcCChhHHHHHHHHhcc-CCC------hh
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIG-TALVDMYLKCGCLPCAHNVFQELKG-SRN------IL 79 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~ 79 (394)
..+-.++..|.+.|.......+|+..|+-+++...-|+.... ..+...+.+...+.+|++.++.... -|+ ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 344555666677777788889999999999887766766544 3456678888999999999987654 232 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------CCC
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM------------VPS 147 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------------~~~ 147 (394)
..+.+.-.+++.|.++.|+.-|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+.... .|+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4556666788999999999999998886 67877766667777778899999999999865321 233
Q ss_pred HHHHHHHHH---------------------------------------------------------------Hhhccchh
Q 016128 148 LKCVTSVLS---------------------------------------------------------------ACADLSAL 164 (394)
Q Consensus 148 ~~~~~~l~~---------------------------------------------------------------~~~~~~~~ 164 (394)
....+..+. -+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 332222221 11223444
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------------------------------HHcCCchHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMY------------------------------------MKCGQPSWARRFFDQ 208 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~a~~~~~~ 208 (394)
+.|.++++-+.+.+...-...-+.|-..+ ...|++++|..++++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 44444444333322111111111110000 011333333333333
Q ss_pred hhcCCCChhhHHHH---HHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC
Q 016128 209 FEIKPDDPAFWNAM---ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP 285 (394)
Q Consensus 209 ~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (394)
... .+...-.+| .-.+-..|+.++|++.|-++..- +..+...+..+...|-...+..+|++++-+... -++.
T Consensus 516 al~--ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 516 ALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 332 111111111 11233344455555444443322 122444455555556566666666666665543 4566
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH-HHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL-SNI 361 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~ 361 (394)
|+.+...|...|-+.|+-..|.+.+-+--. |... +...|..-|....-+++++.+|+++.-+.|.. .-|..+ +.+
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc 669 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASC 669 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHH
Confidence 777778888888888888777776555444 5444 77777777777777888999999888787754 555555 455
Q ss_pred HhhcCCcccHHHHHHHhhh
Q 016128 362 YAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~ 380 (394)
+.+.|++++|..+++....
T Consensus 670 ~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 5688999999999988754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-12 Score=105.96 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=229.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKET 170 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 170 (394)
.|+|.+|+++..+-.+.+-. ....|..-+.+--..|+.+.+-.++.+..+..-.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999998887665 34566677788889999999999999998764355666677778888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC--CC-------hhhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP--DD-------PAFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
+.++.+.+.. ++.+......+|.+.|++.....++..+.+.+ .+ ..+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999988744 67788889999999999999999999998762 22 23367777766666666666667776
Q ss_pred HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh
Q 016128 242 MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS 319 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~ 319 (394)
.... .+.++..-.+++.-+.+.|+.++|.++..+..++ +..|+. .. .-.+.+.++...-++..+.... |+..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 4556777788888999999999999999999887 666651 11 2235566777766666665554 6666
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccC
Q 016128 320 -VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLP 387 (394)
Q Consensus 320 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 387 (394)
.+.+|...|.+++.+.+|...|+.+.+..| +...|..++.++.+.|+..+|.++.++....-.+|+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999999999998888887 6689999999999999999999999988765544443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=110.31 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
....+..+...+...|++++|...+++.... |.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4566677788888888888888888876554 55667788888888889999999999988887643 355677778888
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...|++++|...++..............+..+...+...|++++|...+++... |+.. .+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8888999999999988876422233455677778888999999999999988876 5544 788888999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888888999999999999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-11 Score=99.05 Aligned_cols=352 Identities=12% Similarity=0.104 Sum_probs=221.6
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHHHhcCCHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGMMLNGRSEKAME 99 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~ 99 (394)
=.+...+..|+.+++..+..- |.-...|-..+.+--..|++..|.++|++-.+ +|+...|++.++.-.+-+.++.|..
T Consensus 117 Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 334455555555555555432 22222344444444445555555555555433 5555555555555555555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-------------------------------------HhC
Q 016128 100 LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM-------------------------------------QST 142 (394)
Q Consensus 100 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m-------------------------------------~~~ 142 (394)
++++..-. .|++.+|-.....-.+.|+...|..+|+.. .+.
T Consensus 196 IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 196 IYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555443 355555555555555555555444444443 332
Q ss_pred CCCCC--HHHHHHHHHHhhccchhhHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 143 GMVPS--LKCVTSVLSACADLSALKLGKET--------HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 143 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
++-+ ...|......--+-|+.....+. ++..++.+ +.|-.++--.+..-...|+.+...++|++...+
T Consensus 274 -~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 274 -IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred -cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 1111 12233333332333443333322 23333333 335566666777777889999999999997765
Q ss_pred -CCChh--hHHHHHHH--------HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH----HHHHHccCCHHHHHHHHHHc
Q 016128 213 -PDDPA--FWNAMISG--------YGRNGEYESAVEIFDLMQQEKVKPNSASFVAV----LSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 213 -~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~ 277 (394)
||-.. .|...|-. -....+.+.+.++|+...+. ++-...||..+ ...-.++.++..|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33211 13333222 23568899999999999884 33344555543 34445778999999999998
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC--C
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--P 352 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~ 352 (394)
. |.-|...+|...|..-.+.+.++.+..++++..+ |..- +|......-...|+.+.|..+|+-++....-+ .
T Consensus 431 I---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 431 I---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred h---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 7 8889999999999999999999999999999988 5555 89888888888999999999999887754211 2
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..|...+..-...|.++.|..+++++.+.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 34666777777899999999999998875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-12 Score=114.75 Aligned_cols=263 Identities=10% Similarity=-0.012 Sum_probs=177.2
Q ss_pred CCchHHHHHHHHHHHh-----cCChhHHHHHHHHhcc-CC-ChhHHHHHHHHHH---------hcCCHHHHHHHHHHHHh
Q 016128 43 QSDTMIGTALVDMYLK-----CGCLPCAHNVFQELKG-SR-NILTWNTMIAGMM---------LNGRSEKAMELFEGLAH 106 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~ 106 (394)
+.+...|...+.+... .+++++|+.+|++... .| +...|..+..++. ..+++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4555555555554322 2356788888888775 34 4455665555443 22457889999998888
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHH
Q 016128 107 EGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMA 186 (394)
Q Consensus 107 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 186 (394)
.+.. +..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7543 67788888888888899999999999988764 334567777888888899999999999998887644 23333
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHc
Q 016128 187 TALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGH 263 (394)
Q Consensus 187 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 263 (394)
..++..+...|++++|...+++.... |.++..+..+..++...|+.++|...+.++... .|+ ....+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 33444566678889999998887543 345566777888888899999999998887654 333 3344455556666
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.| +++...++.+.+.....+....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 66 47777777766543333332223 33445556777776666 66665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=103.38 Aligned_cols=290 Identities=12% Similarity=0.070 Sum_probs=190.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhH-HHHHHHHHHh----
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILT-WNTMIAGMML---- 90 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~ll~~~~~---- 90 (394)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.. .|+... |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345667889999999999774433 455667788889999999999999999999886 455544 4555555422
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 91 -NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF-EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 91 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
..+.+...++|+++... .|...+...+.-.+..-..+. .+...+..+...|+++ +|+.+-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 23577888899988776 344444333333333322333 3445556666777664 5666666666555555555
Q ss_pred HHHHHHHHc----C----------CCCCH--HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCC
Q 016128 169 ETHGHVIRA----D----------LNKDE--SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 169 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 231 (394)
+++...... + -.|+. .++..+...|-..|++++|..++++.... |..+..|..-...+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 555554322 1 12333 23455566777888888888888876555 5556678888888888888
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhH--------HHHHHHHHhcCcH
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF--------GCMVDLLGRSGRL 303 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~ 303 (394)
+.+|.+.++..+..... |...-+..+..+.+.|+.++|.+++..+.+. +..|....+ .....+|.+.|++
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888888776543 6666677777778888888888888887765 433322221 3345677788888
Q ss_pred HHHHHHHHhCC
Q 016128 304 DEARELIRELP 314 (394)
Q Consensus 304 ~~a~~~~~~~~ 314 (394)
..|++.|..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 77776655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=108.73 Aligned_cols=226 Identities=11% Similarity=0.025 Sum_probs=199.6
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN 229 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 229 (394)
-+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-+.|.+..+++.|+.++.+-.+. |.++....-..+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 357889999999999999999998887 456778888999999999999999999987666 66777778888999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
++.++|.++|+...+.. ..+.....++...|.-.++.+-|..+++.+..- |+ .++..|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998874 346777778888888999999999999999886 65 5678899999999999999999988
Q ss_pred HHhCCC----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 310 IRELPE----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 310 ~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|++... |+.. +|-.+.......|++..|.+.|+-+...+|++...++.|+-.-.+.|++++|..+++...+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887765 6665 89999999999999999999999999999999999999999999999999999999987654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-12 Score=116.42 Aligned_cols=263 Identities=13% Similarity=0.044 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhh---------ccchhhHHHHHHHHHHH
Q 016128 112 DPATWNSMISGFSQ-----LGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACA---------DLSALKLGKETHGHVIR 176 (394)
Q Consensus 112 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 176 (394)
+...|...+.+... .+++++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55566666555321 23467899999998875 343 445555554433 33558899999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
.+. .+...+..+...+...|++++|...|++.... |.++..+..+...+...|++++|+..+++..+.... +...+.
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 863 47788888888999999999999999997665 666778899999999999999999999999887533 222333
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.++..+...|++++|...+++.... ..+.++..+..+..++...|++++|...++++.. |+.. ..+.+...+...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 4444566689999999999998763 2222455677788889999999999999998765 4444 5666666777777
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++|...++++.+.....+.........+.-.|+.+.+..+ +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4788877777764422222222255566667777777666 7777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-11 Score=99.35 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=230.0
Q ss_pred chHHHHHHHHHHHh--cCChhHHHHHHHHhcc----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHH
Q 016128 45 DTMIGTALVDMYLK--CGCLPCAHNVFQELKG----SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWN 117 (394)
Q Consensus 45 ~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 117 (394)
........+.+++. .++...|..++-.+.. +.|+.....+.+.+...|+.++|+..|+..... .|+ .....
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD 270 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMD 270 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHH
Confidence 33333444555544 3555555555544332 467788889999999999999999999988765 332 22333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016128 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCG 197 (394)
Q Consensus 118 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (394)
.-.-.+.+.|+.++...+...+.... .-+...|-.-.......++++.|..+-++.+..+. .+...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 33445677899999888888876542 23444455555556677899999999998887763 35566666677888899
Q ss_pred CchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH-HHH-HccCCHHHHHHHH
Q 016128 198 QPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL-SAC-GHAGHVDKALQIF 274 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~ 274 (394)
++++|.-.|+..... |.+..+|..|+.+|...|.+.+|.-+-+...+. +..+..+.+.+. ..| ....--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 999999999987665 678899999999999999999998887766554 344666666653 333 2334468899999
Q ss_pred HHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 275 TMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 275 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+...+ +.|+ ....+.+...+...|..+.+..++++... ||....+.|.+.+...+.+++|++.|..+..++|.+
T Consensus 428 ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88774 4565 45667788889999999999999998876 888899999999999999999999999999999999
Q ss_pred CchHHHHHHH
Q 016128 352 PTPFVILSNI 361 (394)
Q Consensus 352 ~~~~~~l~~~ 361 (394)
..+...|-..
T Consensus 505 ~~sl~Gl~~l 514 (564)
T KOG1174|consen 505 KRTLRGLRLL 514 (564)
T ss_pred hHHHHHHHHH
Confidence 7777666443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-10 Score=100.93 Aligned_cols=369 Identities=12% Similarity=0.039 Sum_probs=255.4
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-C--CC-hhHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-S--RN-ILTWNT 83 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~-~~~~~~ 83 (394)
.=|...|..|.-++...|+++.+.+.|++....- -.....|+.+...|...|.-..|+.+++.... . |+ ...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3477888899999999999999999999887543 45677889999999999999999999987653 2 33 333333
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhc--CC--CCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCC-CCC
Q 016128 84 MIAGMM-LNGRSEKAMELFEGLAHE--GF--KPDPATWNSMISGFSQL-----------GMRFEAFKLFEKMQSTG-MVP 146 (394)
Q Consensus 84 ll~~~~-~~~~~~~a~~~~~~m~~~--g~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~-~~~ 146 (394)
.-+.|. +.+..+++++.-.+.... |. ...+..|..+.-+|..+ ....++++.+++..+.+ ..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334444 346777777766666552 11 11344555555455422 22356778888887654 234
Q ss_pred CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC----------
Q 016128 147 SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD---------- 215 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 215 (394)
+...| +.--|+..++++.|.+..++..+.+...+...+..|.-.+.-.+++.+|+.+.+..... +.|
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333 34446677899999999999999877778888988888888889999999888764332 211
Q ss_pred ----------hhhHHHHHHHHh-----------------------hcCChhhHHHHHHHHH--------HcC--------
Q 016128 216 ----------PAFWNAMISGYG-----------------------RNGEYESAVEIFDLMQ--------QEK-------- 246 (394)
Q Consensus 216 ----------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~-------- 246 (394)
.++...++..+- ..++..++.+..+.+. ..|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 111111111111 0112222222222210 001
Q ss_pred -CC--CCH------hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--
Q 016128 247 -VK--PNS------ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-- 315 (394)
Q Consensus 247 -~~--~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (394)
+. |+. ..|......+.+.+..++|.-.+.+..+ ..+.....|......+...|..++|.+.|.....
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01 111 1233455566777788888777777764 4455667788888888999999999999988775
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHH--HHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEE--MAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|+.+ +...+...+.+.|+..-|.. ++..+.+.+|.++..|..++.++.+.|+.++|...|......
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8888 99999999999999988888 999999999999999999999999999999999999988764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=116.69 Aligned_cols=334 Identities=13% Similarity=0.088 Sum_probs=212.2
Q ss_pred ccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHH
Q 016128 2 KECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTW 81 (394)
Q Consensus 2 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 81 (394)
+.. |+.|+.+||..+|..|+..|+++.|- +|..|.-...+.+...++.++......++.+.+. .|...+|
T Consensus 17 e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep~aDty 86 (1088)
T KOG4318|consen 17 EIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EPLADTY 86 (1088)
T ss_pred HHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CCchhHH
Confidence 456 99999999999999999999999999 9999998888999999999999999999887665 6888999
Q ss_pred HHHHHHHHhcCCHHH---HHHHHHHHH----hcCCCCCHHHH--------------HHHHHHHHccCCHHHHHHHHHHHH
Q 016128 82 NTMIAGMMLNGRSEK---AMELFEGLA----HEGFKPDPATW--------------NSMISGFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 82 ~~ll~~~~~~~~~~~---a~~~~~~m~----~~g~~p~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~m~ 140 (394)
..|+.+|...||... +.+.++... ..|+.....-+ ...+......|-++.+++++..+.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998654 333222222 22332211111 112233334455566666655554
Q ss_pred hCC-CCCCHHHHHHHHHHhhcc-chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCCh
Q 016128 141 STG-MVPSLKCVTSVLSACADL-SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDP 216 (394)
Q Consensus 141 ~~~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~ 216 (394)
... ..|... .++-+... ..+++-..+.+...+ .|+..++..++++-...|+.+.|..++.+|... |-++
T Consensus 167 vsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 167 VSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 321 111111 23333322 233333333333333 588999999999999999999999999999887 5556
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHH
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGC 292 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 292 (394)
..|-.|+-+ .++...++.+++-|...|+.|+..|+...+..+.+.|....+.. +...+ ...+..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------GSQLAHGFTAAVRSA 307 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------ccchhhhhhHHHHHH
Confidence 656666555 88888999999999999999999999988888877554211111 22222 222333
Q ss_pred HHHHHHhcCcHHH--HHHHHHhCCC-----CC--hhhHHHHHHHHHhcCCchHHHHHHHHHHh----hCCCCCchHHHHH
Q 016128 293 MVDLLGRSGRLDE--ARELIRELPE-----PT--VSVYHSLLGACWCHLNSDLGEEMAMKLQE----MEPENPTPFVILS 359 (394)
Q Consensus 293 l~~~~~~~g~~~~--a~~~~~~~~~-----~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~ 359 (394)
++++.....+.+. +.-+.....+ -+ ..+|....+ ...+|+.++.+++-..+.. +.+.+...+..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 3322111122211 1112222222 11 124443333 2347888888888776654 3466777777777
Q ss_pred HHHhhc
Q 016128 360 NIYAGL 365 (394)
Q Consensus 360 ~~~~~~ 365 (394)
.-|.+.
T Consensus 387 rqyFrr 392 (1088)
T KOG4318|consen 387 RQYFRR 392 (1088)
T ss_pred HHHHHH
Confidence 777654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-11 Score=100.10 Aligned_cols=327 Identities=16% Similarity=0.112 Sum_probs=225.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcc
Q 016128 50 TALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQL 126 (394)
Q Consensus 50 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 126 (394)
....+-|.+.|++++|++.+.+..+ .|+ +..|.....+|...|+|+++.+.-....+. .|+ +.++..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 3455667889999999999999876 677 788999999999999999998887777765 554 44566666677777
Q ss_pred CCHHHHHH----------------------HHHH---------HHhC--CCCCCHHHHHHHHHHhhc--------cc---
Q 016128 127 GMRFEAFK----------------------LFEK---------MQST--GMVPSLKCVTSVLSACAD--------LS--- 162 (394)
Q Consensus 127 ~~~~~a~~----------------------~~~~---------m~~~--~~~~~~~~~~~l~~~~~~--------~~--- 162 (394)
|++++|+. ++.. +.+. .+.|+.....+....+.. .+
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 77776642 1111 1111 134555444444443321 00
Q ss_pred --hhhHHHHHHH------------HHHHc------CCCC---C------HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-
Q 016128 163 --ALKLGKETHG------------HVIRA------DLNK---D------ESMATALISMYMKCGQPSWARRFFDQFEIK- 212 (394)
Q Consensus 163 --~~~~a~~~~~------------~~~~~------~~~~---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 212 (394)
....+.+.+. .+.+. .... | ..+...-...+.-.|+.-.|..-|+.....
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0111111111 11110 0011 1 111122222344567888888888887665
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-CHhhHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFG 291 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 291 (394)
+.++..|--+...|....+.++....|++..+.+.. ++.+|..-.+...-.+++++|..-|++... +.| +...|-
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~i 432 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYI 432 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHH
Confidence 444444777888899999999999999999887643 777888888888888999999999998874 344 455677
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC------CCchHHHHHHHH
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE------NPTPFVILSNIY 362 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~ 362 (394)
.+..+..+.++++++...|++..+ |+.+ +|+.....+...++++.|.+.|+.++++.|. ++.++..-+.+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 777777889999999999999987 8888 9999999999999999999999999999987 555554433332
Q ss_pred h-hcCCcccHHHHHHHhhhcc
Q 016128 363 A-GLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 363 ~-~~g~~~~a~~~~~~m~~~~ 382 (394)
. =.+++..|+.++++..+.+
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred hchhhhHHHHHHHHHHHHccC
Confidence 2 2378888999988887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-11 Score=106.77 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHhhccchhhHHHHHHHHHHHc-----CC-
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQST-----G-MVPSLKC-VTSVLSACADLSALKLGKETHGHVIRA-----DL- 179 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 179 (394)
..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777665543 1 1222222 222444455555555555555554321 10
Q ss_pred CC-CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 180 NK-DESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 180 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
.| -..+++.|..+|.+.|++++|...+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 01 123334444455555555555444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-11 Score=100.23 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=161.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
......+..+...+...|++++|...+++... +.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 44466788888899999999999999998764 345677888888999999999999999998886433 567788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
..+...|++++|...+++..+... ......+..+..++...|++++|...+.+..+... .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 899999999999999999886432 22345667778888899999999999999887653 3566778888999999999
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 200 SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
++|...+++.... +.++..+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999987654 456666777888888899999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-12 Score=100.61 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=196.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
--+.+.++|.+.|-+.+|.+.|+.-.+. .|-+.||..|.++|.+..++..|+.++.+-.+.- +.++....-....+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3367889999999999999999988775 5677899999999999999999999999988763 335555566778888
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 273 (394)
..++.++|.++++...+. +.++.....+...|.-.++++-|+..|+++.+.|+. ++..|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999997665 666777777778888999999999999999999976 888999999999999999999999
Q ss_pred HHHchhcCCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 274 FTMMDDDFGLKPK--QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 274 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
|+..... --.|+ ..+|..+....+..||+.-|.+.|+-... ++.. .++.|...-.+.|+.+.|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9887754 22233 45788888888899999999999998876 5555 99999999999999999999999999888
Q ss_pred CCC
Q 016128 349 PEN 351 (394)
Q Consensus 349 ~~~ 351 (394)
|.-
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=80.71 Aligned_cols=49 Identities=37% Similarity=0.741 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 76 RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-10 Score=97.64 Aligned_cols=280 Identities=15% Similarity=0.068 Sum_probs=183.4
Q ss_pred hcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 016128 41 EKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS 118 (394)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 118 (394)
+...+......-.+-+...+++.+..++++.+.+ ++....+..-|..+...|+..+-.-+=.++...- +..+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3455666666667777777777777777777664 4555556666667777777777666666666652 225667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc
Q 016128 119 MISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNK-DESMATALISMYMKC 196 (394)
Q Consensus 119 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 196 (394)
+...|...|+.++|.+.|.+..... |+ ...|-....+++-.|..++|...+..+-+.-... -+..| +.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHh
Confidence 7777777777778877777755431 21 2356667777777777777777777665532111 12222 34456667
Q ss_pred CCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC------CCCCHhhHHHHHHHHHccCCHHH
Q 016128 197 GQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK------VKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
+..+.|.++|.+.... |.|+...+-+....-..+.+.+|..+|+..+..- ...-..+++.|.++|.+.+.+++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 7777787777775444 6677777777777777777777777777665210 11134457777777888888888
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHH
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGA 327 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~ 327 (394)
|+..+++... -.+.+..++.++.-.|...|+++.|.+.|.+... |+..+-..++..
T Consensus 474 AI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 474 AIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 8888777765 4455667777777777778888888888777654 666544444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-13 Score=79.55 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 111 PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 111 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-09 Score=92.76 Aligned_cols=353 Identities=13% Similarity=0.114 Sum_probs=207.5
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHH--HHHHH--
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNT--MIAGM-- 88 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--ll~~~-- 88 (394)
..-+=++.+...|++++|.+....++..+ +.+...+.+-+-++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHH
Confidence 33444566778889999999999999877 66777778777788899999999977665431 112222 23333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---------------------
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP--------------------- 146 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--------------------- 146 (394)
.+.+..++|+..++ |..+ +..+...-...+.+.|++++|+++|+.+.+.+.+.
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 36677777777776 2222 23355555666777777777777777764433210
Q ss_pred ------CHHHHHHHH---HHhhccchhhHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHHcCCchHHH
Q 016128 147 ------SLKCVTSVL---SACADLSALKLGKETHGHVIRAD-------LNKDE-------SMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 147 ------~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~g~~~~a~ 203 (394)
...+|..+. ..+...|++.+|+++++...+.+ -.-+. .+-..|...+-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 011232222 23455677777777777763211 00001 11122344555667777777
Q ss_pred HHHHHhhcC-CCChhh----------------------------------------------------------------
Q 016128 204 RFFDQFEIK-PDDPAF---------------------------------------------------------------- 218 (394)
Q Consensus 204 ~~~~~~~~~-~~~~~~---------------------------------------------------------------- 218 (394)
+++..+... +.|...
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777654432 221110
Q ss_pred -----------------HHHHHHHH--hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH----
Q 016128 219 -----------------WNAMISGY--GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT---- 275 (394)
Q Consensus 219 -----------------~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---- 275 (394)
+.+++... ++...+..+.+++....+....-.....-..++.....|+++.|..++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11111110 0111233344444433332211122344455566677788888888887
Q ss_pred ----HchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHH
Q 016128 276 ----MMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 276 ----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
.+. .+.-.+.+...++..+.+.++.+.|..++.+... +... ++..++..-.+.|+-++|...+
T Consensus 405 ~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 333 2233445566667777777776666666655543 1111 4444445556789999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 342 MKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+++.+..|++..+...++.+|.+. +.+.|..+-+.+
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999986 677777665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-09 Score=92.98 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=82.9
Q ss_pred CCCHhh--HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 284 KPKQEH--FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 284 ~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
+|+... +-.++..|-+.|+++.|..+++.... |..+ .|..-.+.+...|+.++|..+++++.+++..|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 455444 44577888999999999999999998 6666 777777889999999999999999999997776666677
Q ss_pred HHHHhhcCCcccHHHHHHHhhhccc
Q 016128 359 SNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
+.-..+++..++|..+....-+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7888899999999999888877664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-11 Score=106.41 Aligned_cols=233 Identities=15% Similarity=0.210 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHHcCCchHHHHHHHHhhcC--------
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRA-----D-LNKDE-SMATALISMYMKCGQPSWARRFFDQFEIK-------- 212 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------- 212 (394)
..+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++.+|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677899999999999999999988664 2 12222 23345778899999999999999986432
Q ss_pred -CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHHccCCHHHHHHHHHHchhcCC--
Q 016128 213 -PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-----KV-KPNS-ASFVAVLSACGHAGHVDKALQIFTMMDDDFG-- 282 (394)
Q Consensus 213 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 282 (394)
|.-..+++.|..+|.+.|++++|...+++..+- |. .|.. ..++.++..|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222344888888999999999999888876431 21 1222 3466777888999999999999987765432
Q ss_pred CCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 283 LKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 283 ~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
..++ ..+++.|...|.+.|++++|.++++++.. +... .++.+...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 35788999999999999999999998874 2222 7888999999999999999999887763
Q ss_pred ----CCCCC---chHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 348 ----EPENP---TPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 348 ----~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+|.++ .+|..|+.+|.+.|+++.|+++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45444 5688899999999999999999988763
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-11 Score=100.29 Aligned_cols=233 Identities=12% Similarity=-0.000 Sum_probs=162.6
Q ss_pred HHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTG-MVPS--LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
....+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+... .+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 344567788888888888542 2222 34577778888999999999999999988763 4688899999999999999
Q ss_pred hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 200 SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
++|...|++.... |.+...|..+..++...|++++|++.+++..+.. |+..........+...++.++|...+....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999987665 6667788889999999999999999999998864 433222222223445678999999997765
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcH--HHHHHHHHhCCC------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRL--DEARELIRELPE------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
. ...++... ..+... ..|+. +++.+.+.+..+ |+.. .|..+...+...|++++|+..|+++.+.+|
T Consensus 193 ~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 33333322 223333 34444 333333332222 3333 788999999999999999999999999996
Q ss_pred CC-CchHHHHHHHHh
Q 016128 350 EN-PTPFVILSNIYA 363 (394)
Q Consensus 350 ~~-~~~~~~l~~~~~ 363 (394)
++ +..-..++....
T Consensus 268 ~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 268 YNFVEHRYALLELAL 282 (296)
T ss_pred chHHHHHHHHHHHHH
Confidence 44 333344444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-08 Score=88.65 Aligned_cols=194 Identities=11% Similarity=0.146 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC-----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC----------
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIKPDD-----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK---------- 248 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 248 (394)
..+..+...|-..|+.+.|..+|++..+.+-. ..+|-.-...-.+..+++.|+++++.....--.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 44566667777777777777777776654221 122444444455566777777777665432111
Q ss_pred C-------CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----CC
Q 016128 249 P-------NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----PT 317 (394)
Q Consensus 249 ~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~ 317 (394)
| +...|..+++.--..|-++....+++.+.+- .+ -++.+.......+....-++++.+++++-+. |+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 0 1223444444444556677777777777654 22 2233333333344556678888888888876 66
Q ss_pred hh-hHHHHHHHHHh---cCCchHHHHHHHHHHhhCCCCCch--HHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 318 VS-VYHSLLGACWC---HLNSDLGEEMAMKLQEMEPENPTP--FVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 318 ~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.. .|+..+.-+.+ ....+.|..+|+++++.-|+...- |...+..-.+.|....|..+++++.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66 88887766654 246789999999999966644322 3333333445677777888887754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-10 Score=94.75 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH
Q 016128 90 LNGRSEKAMELFEGLAHEG-FKPD--PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (394)
..+..+.++.-+.++.... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777777542 2222 3457777777888888888888888877753 3356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
|.+.++...+.... +..++..+..++...|++++|.+.|++.... |.++ ........+...++.++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888888776532 4566677777788888888888888876654 3333 2222222334566788888888665433
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC-----CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK-----PKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
. .|+... ..+.. ...|+...+ ..+..+.+..... .....|..+...+.+.|++++|...|++..+
T Consensus 195 ~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 L-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred C-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 222221 12222 233444333 2334433211111 1234677778888888888888888887765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=88.20 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
+...|.-.|...|+...|..-+++.... |.+..+|..+...|.+.|+.+.|.+.|++....... +....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445666788888888888888776554 556667788888888888888888888888776422 55677777777888
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~ 340 (394)
.|++++|...|+..........-..+|..+.-+..+.|+++.|.+.|++..+ |+.. +.-.+.....+.|++..|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 8888888888888877644444556777777777788888888888888776 5555 777777778888888888888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 341 AMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+++.....+.+...+...+..-.+.|+.+.+-++-.++..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777777777777777777778887777766555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-09 Score=85.96 Aligned_cols=122 Identities=9% Similarity=0.075 Sum_probs=73.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCC--------------ChhH---
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR--------------NILT--- 80 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~--- 80 (394)
..++...|++++|..+|..+.... .++...+..|.-++.-.|.+.+|.++-.+.+..| |..-
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 344557788888888888877755 5666667777777777788888888777665322 1110
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhC
Q 016128 81 -----------WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS-MISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 81 -----------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
--+|.......-.+.+|++++.+.... .|+-...|. +.-+|.+..-++-+.+++.-..+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 112222222334567777777777765 344444443 334566666666666666655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-09 Score=97.38 Aligned_cols=299 Identities=13% Similarity=0.132 Sum_probs=138.0
Q ss_pred HHHHhcCChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-----
Q 016128 54 DMYLKCGCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL----- 126 (394)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----- 126 (394)
..+...|++++|++.++.-.. -.|. .........+.+.|+.++|..++..+.+.++. |..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 344556666666666655442 1232 33444556666666666666666666666321 233333344443211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK-LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.+.+....+|+++...- |.......+.-.+.....+. .+...+..+...|++ .+|+.|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555666555432 33333322222222222222 233444444455532 2344444444333222222222
Q ss_pred HHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCC
Q 016128 206 FDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGL 283 (394)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (394)
+..+... +...+.+.... ....-.|.. .++..+.+.|...|++++|..+++....+
T Consensus 166 ~~~~~~~-------------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--- 223 (517)
T PF12569_consen 166 VEEYVNS-------------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--- 223 (517)
T ss_pred HHHHHHh-------------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Confidence 2222110 00000000000 000011222 23344455566666666666666666543
Q ss_pred CCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCchHHHHHHHHHHhhCC-CCCc-----
Q 016128 284 KPK-QEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSDLGEEMAMKLQEMEP-ENPT----- 353 (394)
Q Consensus 284 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----- 353 (394)
.|+ +..|..-.+.|.+.|++.+|.+.++...+-|.. +-+..+..+.+.|+.++|.+.+..+...+. +...
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 333 455555666666666666666666666552222 444555556666666666666666654431 1111
Q ss_pred -hH--HHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 354 -PF--VILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 354 -~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+| ...+.+|.+.|++..|++.|..+.+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2345566677777777766655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-11 Score=90.65 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=144.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
...|.-.|.+.|+...|..-+++.++... -+..++..+...|.+.|..+.|.+.|+..... -+-+-.+.|...-.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 56677889999999999999999999753 36678999999999999999999999999852 2345678899999999
Q ss_pred hcCcHHHHHHHHHhCCC----CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH
Q 016128 299 RSGRLDEARELIRELPE----PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
..|++++|...|++... +... +|..+.-+..+.|+.+.|...|++..+.+|..+.+...+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999999987 3344 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccc
Q 016128 374 IRQMINDRQL 383 (394)
Q Consensus 374 ~~~~m~~~~~ 383 (394)
+++.....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9998877654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-09 Score=86.87 Aligned_cols=301 Identities=10% Similarity=-0.016 Sum_probs=219.2
Q ss_pred CCCCChHHHHHHHHHhhhhHhHH--HHHHHHHHHHh-hhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChh---
Q 016128 6 SDEPNSVTFISVISACASLLYLQ--FGRQVHGLTLK-IEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNIL--- 79 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 79 (394)
.+.|+..+...-+.+++..-..+ .+.+.+-.+.. .-++.+......+.+++...|+.++|+..|++.. ..|+.
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-~~dpy~i~ 267 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-CANPDNVE 267 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-hCChhhhh
Confidence 45666666666777766554333 33333333332 2357789999999999999999999999999987 33333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
......-.+.+.|+++....+...+....- -....|..-.......++++.|+.+-++.++.. +.+...+-.-..++.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 233344556788999998888888776521 133444444555666788999999999888753 234455666667788
Q ss_pred ccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHH-HHHh-hcCChhhHH
Q 016128 160 DLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMI-SGYG-RNGEYESAV 236 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~-~~~~-~~~~~~~a~ 236 (394)
..++.++|.-.|+...... +-+...|.-|+++|...|++.+|.-+-+..... +.+..+.+.+. ..+. ...--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999999988764 347899999999999999999998877664333 44555544442 2222 223357888
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 237 EIFDLMQQEKVKPN-SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
+++++-... .|+ ....+.+...|...|..+.++.+++.... .-||....+.|...+...+.+++|.+.|.....
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888887765 454 35667788889999999999999999885 478999999999999999999999999987654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-09 Score=90.01 Aligned_cols=348 Identities=11% Similarity=0.079 Sum_probs=222.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-ChhHHHHHHHHHHhcCCHHH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-NILTWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~ll~~~~~~~~~~~ 96 (394)
.+....|+++.|...|...+... +++...|..-..+|++.|++++|++=-.+-.. .| -...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999999998887 66889999999999999999999877666554 34 45679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcc------------------------------------------------CC
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQL------------------------------------------------GM 128 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------------------------------------------------~~ 128 (394)
|+..|.+-.+.... +...++.+..++... .+
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999987776322 344445554444111 00
Q ss_pred HHHHHHHHHHHH--------hCC-------CCC------------C----------HHHHHHHHHHhhccchhhHHHHHH
Q 016128 129 RFEAFKLFEKMQ--------STG-------MVP------------S----------LKCVTSVLSACADLSALKLGKETH 171 (394)
Q Consensus 129 ~~~a~~~~~~m~--------~~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~ 171 (394)
.+......-.+. ..| ..| | ..-...+.++..+..++..+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 011111111100 001 111 0 123677888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh-HHH-------HHHHHhhcCChhhHHHHHHHHH
Q 016128 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF-WNA-------MISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~-------l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
....... .+..-++....+|...|.+..+...-+...+.+..... |+. +..+|.+.++++.++..|++..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 9998876 46777788888899999888777766654443222222 333 3446677788999999999876
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS- 319 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~- 319 (394)
.....|+.. .+....+++.+...... -+.|.. .-...-...+.+.|++..|...|.+++. |++.
T Consensus 326 te~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 654443322 12233344444333322 122221 1111224556666777777766666665 5555
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.|....-+|.+.|.+..|++-.+...+++|+....|..-+.++....+|++|.+.|.+..+.+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666667777777777776666666666666666666666666667777766666655543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-08 Score=82.41 Aligned_cols=194 Identities=16% Similarity=0.085 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTM---IAGMMLNGRSEKAMELFEGLAHEGFKPDPATW-NSMI 120 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~ 120 (394)
++.-.--+...+...|++.+|+.-|.... ..|+..|.++ ...|...|+-.-|+.=+++..+. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44455567778888999999999999988 5555556555 45788889888888888888876 6774432 2344
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHH--------------HH--HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLK--------------CV--TSVLSACADLSALKLGKETHGHVIRADLNKDES 184 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (394)
..+.++|.+++|..=|+...+.. |+.. .+ ...+..+...|+...|.+....+++.. +-+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 56889999999999999988763 2211 11 112223344455555555555555543 23555
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.+..-..+|...|++..|+.=++...+. ..+...+--+...+-..|+.+.++...++.++
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555566666665555555444332 23334444444555555555555555555554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-10 Score=99.16 Aligned_cols=220 Identities=13% Similarity=0.056 Sum_probs=177.7
Q ss_pred hhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHH
Q 016128 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
+.+.|++.+|.-.|+..++.++ -+...|..|.......++-..|+..+++..+. |.+....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4567889999999999888763 47888999999999999999999999887665 677777888888999999999999
Q ss_pred HHHHHHHHcCCC-----C---CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 016128 237 EIFDLMQQEKVK-----P---NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308 (394)
Q Consensus 237 ~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (394)
+.++.-....++ + +...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999987654311 0 0000000 12222334455666666665554666888899999999999999999999
Q ss_pred HHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 309 LIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 309 ~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.|+.... |++. .||.|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.+++|...|=.++.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999886 8888 9999999999999999999999999999999999999999999999999999998877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-08 Score=85.29 Aligned_cols=59 Identities=8% Similarity=-0.073 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCC---------CCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPE---------NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
....++...|+.+.|...++.+...... ........+.++...|++++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556666777777777666552211 2233344455566778888888887776653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=94.64 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=85.0
Q ss_pred HHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCH
Q 016128 192 MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH----AGHV 267 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 267 (394)
.+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...++.++.. .+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhH
Confidence 344455566555554432 344445555666666666666666666666532 22333344444322 2346
Q ss_pred HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc-hHHHHHHHH
Q 016128 268 DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS-DLGEEMAMK 343 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~-~~a~~~~~~ 343 (394)
.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++..+ |+.. +...++.+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 677777777655 3455666666667777777777777777766655 4444 555566666666665 556667777
Q ss_pred HHhhCCCC
Q 016128 344 LQEMEPEN 351 (394)
Q Consensus 344 ~~~~~~~~ 351 (394)
+....|.+
T Consensus 262 L~~~~p~h 269 (290)
T PF04733_consen 262 LKQSNPNH 269 (290)
T ss_dssp CHHHTTTS
T ss_pred HHHhCCCC
Confidence 66666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-07 Score=83.74 Aligned_cols=250 Identities=12% Similarity=0.133 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcC
Q 016128 127 GMRFEAFKLFEKMQSTGMVPS------LKCVTSVLSACADLSALKLGKETHGHVIRADLNKD---ESMATALISMYMKCG 197 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 197 (394)
|+..+....|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+.+.+.- ..+|..-...-.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4445555555555443 2221 23567778888899999999999999988765432 345555556666778
Q ss_pred CchHHHHHHHHhhcCCCC-------------------hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 198 QPSWARRFFDQFEIKPDD-------------------PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
+++.|.++.+.....|.+ ...|...++..-..|-++....+|+++.+..+. ++.......
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 889999988876544332 223666666666777888888888887665432 222222222
Q ss_pred HHHHccC---------------------------------------CHHHHHHHHHHchhcCCCCCCHhh--HHHHHHHH
Q 016128 259 SACGHAG---------------------------------------HVDKALQIFTMMDDDFGLKPKQEH--FGCMVDLL 297 (394)
Q Consensus 259 ~~~~~~~---------------------------------------~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 297 (394)
..+-... .++.|..+|++..+ +++|...- |-.....-
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 2222333 34555555555544 44333211 11111111
Q ss_pred HhcCcHHHHHHHHHhCCC---CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc--hHHHHHHHHhhcCCccc
Q 016128 298 GRSGRLDEARELIRELPE---PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT--PFVILSNIYAGLGRWED 370 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 370 (394)
.+.|-...|+.++++... +... .||..|.-....=.+.....+|+++++.-|++.. +....+..-.+.|..+.
T Consensus 597 Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidR 676 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDR 676 (835)
T ss_pred HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHH
Confidence 223444455555555443 1111 4555443333333334445556666665554322 23334555667788888
Q ss_pred HHHHHHHhhh
Q 016128 371 VGRIRQMIND 380 (394)
Q Consensus 371 a~~~~~~m~~ 380 (394)
|..++.--.+
T Consensus 677 ARaIya~~sq 686 (835)
T KOG2047|consen 677 ARAIYAHGSQ 686 (835)
T ss_pred HHHHHHhhhh
Confidence 8888765444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-10 Score=100.25 Aligned_cols=259 Identities=13% Similarity=0.114 Sum_probs=170.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcC
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRAD 178 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (394)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556666777777777777777777777777776 7777766656666677777777777777666554
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCCHhhHHHH
Q 016128 179 LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ-EKVKPNSASFVAV 257 (394)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 257 (394)
.|.+.+|..|..+|...|+... |+...+ -...+...+...|.-.....++..+.- .+..||..+.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~--- 145 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA--- 145 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---
Confidence 4667777777777777777654 222222 123333445555555555555554332 2234454432
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc-CcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCch
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS-GRLDEARELIRELPE-PTVSVYHSLLGACWCHLNSD 335 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 335 (394)
+......|.++.+.+++..+-......|... +++-.... ..+++-..+.+...+ |+..+|..++.+-...|+.+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3334455777777777765533211122221 24444333 345666666666666 88889999999999999999
Q ss_pred HHHHHHHHHHhhC-CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccccccCCC
Q 016128 336 LGEEMAMKLQEME-PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGI 389 (394)
Q Consensus 336 ~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 389 (394)
.|..++.+|.+.+ |-++..|..|+.. .|+..-++.+++.|.+.|+.|+...
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 9999999999988 7777777777655 7888889999999999999988754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-08 Score=77.62 Aligned_cols=370 Identities=12% Similarity=0.027 Sum_probs=196.3
Q ss_pred CccccCCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChh
Q 016128 1 MKECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNIL 79 (394)
Q Consensus 1 M~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 79 (394)
|... |+..-...+.+++..+.+..++..|++++..-.+.. +.+....+.|..+|....++..|-.+++++.. .|...
T Consensus 1 M~~~-g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 1 MAGS-GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred CCcc-cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 4455 677777778899999999999999999988777665 55777888899999999999999999998875 34444
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHhc------------------CC-------------CCCHHHHHHHHHHHHccC
Q 016128 80 TWNT-MIAGMMLNGRSEKAMELFEGLAHE------------------GF-------------KPDPATWNSMISGFSQLG 127 (394)
Q Consensus 80 ~~~~-ll~~~~~~~~~~~a~~~~~~m~~~------------------g~-------------~p~~~~~~~l~~~~~~~~ 127 (394)
-|.. -..++.+.+.+..|+++...|... +- .-+..+.+.......+.|
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 4432 234555666666666666655432 00 002233333333445667
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC-------------CH----------
Q 016128 128 MRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK-------------DE---------- 183 (394)
Q Consensus 128 ~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------- 183 (394)
+++.|.+-|+...+- |..| ...|+..+ ++.+.++++.|.+...+++++|++. |.
T Consensus 159 qyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 777777777666553 3333 33444333 4445666777777777666655321 10
Q ss_pred -----HHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 184 -----SMATALISMYMKCGQPSWARRFFDQFEIK---PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 184 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
..+|.-...+.+.|+++.|.+.+-.|+.+ ..||.+...+.-. -..+++.+..+-+.-+.+.+. -...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 01111122234556666666666666543 3345443333221 123344444555555555433 2445666
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g 332 (394)
.++-.||+..-++.|-.++.+-....-.-.+...|+.|=......-..++|.+-+..+...-.. ...+-++- .+..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe-~r~~ 393 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE-ARHN 393 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 6666777766666666666543322000122333332222222233445554444333210000 00000111 1111
Q ss_pred CchH----HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 333 NSDL----GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 333 ~~~~----a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+-+. +++-|++..++. ..+...-++.|.+..++..++++|..-.+
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111 222233333322 11334445667788899999999876554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-07 Score=81.73 Aligned_cols=368 Identities=10% Similarity=0.054 Sum_probs=214.4
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMI 85 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll 85 (394)
+|-..++-.-+--|-..+++...++..+.+++ +.+-...+.....-.+...|+-++|......-.. ..+.+.|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 33333333333344566777777777777776 3344445555555555666778888777776553 34556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
-.+-...++++|++.|......+.. |...|.-+.-.-++.|+++.....-.++.+.. +-....|..+..+..-.|+..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888877776433 56666666666667777777666666665541 223345566666666777777
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHHcCCchHHHHHHHHhhcCCCCh-hhHHHHHHHHhhcCChhhHHH
Q 016128 166 LGKETHGHVIRAD-LNKDESMATALI------SMYMKCGQPSWARRFFDQFEIKPDDP-AFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 166 ~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 237 (394)
.|..+++...+.. ..|+...+.-.. ......|..++|.+.+......-.|- ..-..-...+.+.+++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 7777777776554 244554443222 22344555666665555443321111 112334455666777777777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHH--ccCCHHHHHHHHHHchhcC---------------------------------C
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACG--HAGHVDKALQIFTMMDDDF---------------------------------G 282 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------------------------------~ 282 (394)
++..+... .||...|......+. -.+..+....+|....+.+ |
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 77777665 345544443333222 1222222223333332211 3
Q ss_pred CCCCHhhHHHHHHHHHhcCcHH---H-HHHHHHhCC-------------CCChh---hHHHHHHHHHhcCCchHHHHHHH
Q 016128 283 LKPKQEHFGCMVDLLGRSGRLD---E-ARELIRELP-------------EPTVS---VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~---~-a~~~~~~~~-------------~~~~~---~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+++- +..+...|-.....+ + +..+...+. +|... ++-.++..+-..|+++.|..+.+
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3322 222222221111111 0 111111111 13333 44456678888999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 343 KLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
.+.+.-|.-+..|..-++.+.+.|++++|..++++..+.+.
T Consensus 396 ~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 396 LAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99998898888899999999999999999999999877543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=80.97 Aligned_cols=350 Identities=13% Similarity=0.122 Sum_probs=187.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHH
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~ 95 (394)
+.-+...+|+..|+.+++.-...+-.-...+---+..++...|++++|...+.-+.. .++...+..|...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444566788999999998777555333333444456778889999999999998765 456666777777777778888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHc------------------------------cCCHHHHHHHHHHHHhCCCC
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQ------------------------------LGMRFEAFKLFEKMQSTGMV 145 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~------------------------------~~~~~~a~~~~~~m~~~~~~ 145 (394)
+|..+-....+. +-.-..|++...+ .-.+++|+++|.+.... .
T Consensus 109 eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 888776654321 1112222222222 23456666666666543 2
Q ss_pred CCHHHHHHHH-HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCchH----------------HHHHH
Q 016128 146 PSLKCVTSVL-SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC--GQPSW----------------ARRFF 206 (394)
Q Consensus 146 ~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~----------------a~~~~ 206 (394)
|+-...|.-+ -+|.+..-++-+.+++.-....- +.++...|....-..+. |+..+ +..+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 3444444333 33455666666666666555442 22233333222222211 21111 11111
Q ss_pred H-----------------HhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH-----Hcc
Q 016128 207 D-----------------QFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC-----GHA 264 (394)
Q Consensus 207 ~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~ 264 (394)
+ .+.+ .-|..--.|+--|.+.++..+|..+.+++.. ..|.......+..+- ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~--~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMK--HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHh--hChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH
Confidence 1 1100 1122233445556778888888887766532 122222222222111 111
Q ss_pred CCHHHHHHHHHHchhcCCC-----------------------------------CCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 265 GHVDKALQIFTMMDDDFGL-----------------------------------KPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
....-|.+.|+..-.. +. ..|...--.+..+++..|.+.+|.++
T Consensus 337 eHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH
Confidence 1223333333332211 11 11111122356677778888888888
Q ss_pred HHhCCCCC---hhhHHH-HHHHHHhcCCchHHHHHHHHHHhhC-CCCC-chHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 310 IRELPEPT---VSVYHS-LLGACWCHLNSDLGEEMAMKLQEME-PENP-TPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 310 ~~~~~~~~---~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
|-++..|+ ..+|.. |.++|.+.++++.|..++ .+.+ |.+. ..+...++.|.+.+.+--|-+.|+.+...+.
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 88887754 335544 457778888888776654 3334 3222 2344456677788888888888887776543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-07 Score=82.59 Aligned_cols=295 Identities=15% Similarity=0.069 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILT---WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMIS 121 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 121 (394)
..|..+...+...|+.+.+...+..... +++... .......+...|++++|.+++++..+.... +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3444444555555555555444444332 112111 111223344566777777777666655221 3333332 11
Q ss_pred HHH----ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 122 GFS----QLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 122 ~~~----~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
.+. ..+....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222 23333444444433 1112222 2333345556666777777777777776654 23455566666777777
Q ss_pred CCchHHHHHHHHhhcC-CCCh----hhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHHccCCH
Q 016128 197 GQPSWARRFFDQFEIK-PDDP----AFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASF-V--AVLSACGHAGHV 267 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~ 267 (394)
|++++|..++++.... +.++ ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 7777777777765443 1111 1244566667777777777777777643321 1111111 1 222222233322
Q ss_pred HHHHHH---HHHchhc-CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---C---Chh------hHHHHHHHHHhc
Q 016128 268 DKALQI---FTMMDDD-FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---P---TVS------VYHSLLGACWCH 331 (394)
Q Consensus 268 ~~a~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~---~~~------~~~~l~~~~~~~ 331 (394)
+.+..+ ....... .+ ............++...|+.+.|...++.+.. . ... ......-++...
T Consensus 242 ~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 222222 1111110 01 11111112455566777778777777776643 1 101 112222344567
Q ss_pred CCchHHHHHHHHHHhh
Q 016128 332 LNSDLGEEMAMKLQEM 347 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~ 347 (394)
|+.++|.+.+..+...
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=90.17 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=129.9
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
..-.|++..++.-.+ ........+......+.+++...|+.+.++.-...-. +|.......+...+...++-+.++.-
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 334566666665444 1111112233344556666666777665554443333 45555554444444333444445444
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCC
Q 016128 101 FEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADL 179 (394)
Q Consensus 101 ~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 179 (394)
+++....+..+ +..........+...|++++|++++..- .+.......+.++.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 44433332222 2222233334555667777777666432 245556666777777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH
Q 016128 180 NKDESMATALISMYMK----CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (394)
.|.. ...+..++.. ...+.+|..+|+++... ++++.+.+.+..++...|++++|.+++.+....+.. ++.+.
T Consensus 162 -eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~L 238 (290)
T PF04733_consen 162 -EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTL 238 (290)
T ss_dssp -CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHH
T ss_pred -CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHH
Confidence 2332 2334444332 23577777777777666 456666677777777777777777777776654422 55566
Q ss_pred HHHHHHHHccCCH-HHHHHHHHHchh
Q 016128 255 VAVLSACGHAGHV-DKALQIFTMMDD 279 (394)
Q Consensus 255 ~~l~~~~~~~~~~-~~a~~~~~~~~~ 279 (394)
..++......|+. +.+.+++.++..
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6666666666665 556666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-07 Score=77.14 Aligned_cols=312 Identities=10% Similarity=0.014 Sum_probs=194.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHH-HHHHHHHhcC
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWN-TMIAGMMLNG 92 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~ll~~~~~~~ 92 (394)
--+-+.+...|++..|+.-|...++-+ +.+-.++-.-...|...|+-..|+.-+.++.+ +||...-. --...+.+.|
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 344555666677777777777776543 22333344445678888999889888888775 56653322 2235678999
Q ss_pred CHHHHHHHHHHHHhcCCCC--CHHH------------HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 93 RSEKAMELFEGLAHEGFKP--DPAT------------WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
.+++|..=|+...+..... .... ....+..+...|+...|+.....+.+.. +-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 9999999999998873321 1111 2233455677899999999999999863 44777888889999
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
...|++..|..=++...+.... +...+-.+-..+...|+.+.++...++..+..|+-... |..-+...+..+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C------f~~YKklkKv~K~ 272 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC------FPFYKKLKKVVKS 272 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH------HHHHHHHHHHHHH
Confidence 9999999999888888776543 55555567788889999999999999987753432221 1111111222222
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-----HhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-----QEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+..|.+ ....++|.++..-.+...+. .|. ...+..+..++...|++.+|++...++
T Consensus 273 les~e~----------------~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 273 LESAEQ----------------AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHH----------------HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 222222 12233444444444444332 122 122334445555566666666666665
Q ss_pred CC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 314 PE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 314 ~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.+ |+++ ++.--..+|.-...++.|+.-|+++.+.+++|..+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 54 4444 66666666666666666666666666666655443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=87.56 Aligned_cols=322 Identities=10% Similarity=0.064 Sum_probs=196.6
Q ss_pred HHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHH
Q 016128 54 DMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRF 130 (394)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~ 130 (394)
.+.+..|+++.|+.+|.+... ++|...|..=..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 456678999999999998655 678888999999999999999998877666664 666 568899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH---HHHHHHHHHcC---CCCCHHHHHHHHHHHH----------
Q 016128 131 EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG---KETHGHVIRAD---LNKDESMATALISMYM---------- 194 (394)
Q Consensus 131 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~---------- 194 (394)
+|+.-|.+=.+.. +-|...++.+..++......... -.++..+.... .......|..++..+-
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999877653 33555666666665111000000 00111110000 0000011111111110
Q ss_pred HcCCchHHHHHHHH-----------hhcC----C--------C-------------ChhhHHHHHHHHhhcCChhhHHHH
Q 016128 195 KCGQPSWARRFFDQ-----------FEIK----P--------D-------------DPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 195 ~~g~~~~a~~~~~~-----------~~~~----~--------~-------------~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
...+...+...+.. +... | + ...-...+.++.-+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 00001111111110 0000 0 0 001145566777777778888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC--CC----HhhHHHHHHHHHhcCcHHHHHHHHHh
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK--PK----QEHFGCMVDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (394)
+....... -+..-++....+|...|.+.+....-....+. |.. .+ ...+..+..+|.+.++++.|+..|++
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 87777654 34455555666676666665555444433332 111 11 11222344577777777777777776
Q ss_pred CCC----------------------------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 313 LPE----------------------------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 313 ~~~----------------------------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
... |... -...-...+.+.|++..|+..|.+++..+|+++..|...+-+|.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 543 2221 11222455678999999999999999999999999999999999
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
+.|.+..|++-.+...+.
T Consensus 404 kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 999999999877766654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-07 Score=92.03 Aligned_cols=328 Identities=11% Similarity=-0.034 Sum_probs=213.0
Q ss_pred HHHhcCChhHHHHHHHHhcc---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C----CCC--HHHHHHHHHHH
Q 016128 55 MYLKCGCLPCAHNVFQELKG---SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEG--F----KPD--PATWNSMISGF 123 (394)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~----~p~--~~~~~~l~~~~ 123 (394)
.....|+++.+...++.++. ..+..........+...|+++++...++.....- . .|. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456788887777777642 1222233344555667899999999998775431 1 111 11222334556
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccchhhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHH
Q 016128 124 SQLGMRFEAFKLFEKMQSTGMVPSL----KCVTSVLSACADLSALKLGKETHGHVIRADL---NK--DESMATALISMYM 194 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 194 (394)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++...... .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999987653111121 2345566667789999999999888764321 11 1234455677788
Q ss_pred HcCCchHHHHHHHHhhcC----C-C----ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCC--CHhhHHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK----P-D----DPAFWNAMISGYGRNGEYESAVEIFDLMQQEK--VKP--NSASFVAVLSAC 261 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~----~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 261 (394)
..|+++.|...+++.... . + ....+..+...+...|++++|...+.+..... ..+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998875332 1 1 11224455666777899999999998875531 112 233445566677
Q ss_pred HccCCHHHHHHHHHHchhcC-CCCCCHh--h--HHHHHHHHHhcCcHHHHHHHHHhCCCCChh-------hHHHHHHHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDF-GLKPKQE--H--FGCMVDLLGRSGRLDEARELIRELPEPTVS-------VYHSLLGACW 329 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~ 329 (394)
...|+.+.|...+....... ....... . ....+..+...|+.+.|..++.....+... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999888875321 1111111 0 011224455689999999998877653211 1346677888
Q ss_pred hcCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 330 CHLNSDLGEEMAMKLQEMEP------ENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..|++++|...++++..... ....+...++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999887531 122356777888999999999999999987754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-08 Score=78.80 Aligned_cols=192 Identities=14% Similarity=0.061 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS-MISGFS 124 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~ 124 (394)
-+++.+..+.+..++.+|++++....+ +.+....+.|..+|....++..|.+.++++... .|...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 355556666677777777777766554 235555666677777777777777777777665 444444432 234455
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL--SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
+.+.+.+|+++...|.+. |+...-..-+ ......+++..+..+.++.-..| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 667777777777766542 2221111111 12244566666666665543322 333344444445566667776
Q ss_pred HHHHHHhhcC-CCChhh-HHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 203 RRFFDQFEIK-PDDPAF-WNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 203 ~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
.+-|+...+. +-++-. ||. .-++.+.|+++.|++...++.+.|++
T Consensus 164 vqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 6666665443 233322 333 33344556666677766666666543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-07 Score=81.63 Aligned_cols=343 Identities=15% Similarity=0.091 Sum_probs=228.3
Q ss_pred hhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH
Q 016128 40 IEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATW 116 (394)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 116 (394)
..+..|+.+|..+.-+...+|+++.+.+.|++... -.....|+.+...|...|.-..|..+++.-......|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567899999999999999999999999999773 23456799999999999999999999988776543343 3344
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHhhcc-----------chhhHHHHHHHHHHHcCCC
Q 016128 117 NSMISGFS-QLGMRFEAFKLFEKMQST--GM--VPSLKCVTSVLSACADL-----------SALKLGKETHGHVIRADLN 180 (394)
Q Consensus 117 ~~l~~~~~-~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 180 (394)
-.....|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 457777777777766551 11 12233444444444321 2345677888888776643
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-CCC---------
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVK--------- 248 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------- 248 (394)
|+.+.-.+.--|+..++.+.|.+..++.... ..++..|..|.-.+...+++.+|+.+.+..... |..
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3333333555677889999999999887654 467778999999999999999999999876543 110
Q ss_pred ---------CCHhhHHHHHHHHHc------cC-----------------CHHHHHHHHHHc----h---hcC--------
Q 016128 249 ---------PNSASFVAVLSACGH------AG-----------------HVDKALQIFTMM----D---DDF-------- 281 (394)
Q Consensus 249 ---------~~~~~~~~l~~~~~~------~~-----------------~~~~a~~~~~~~----~---~~~-------- 281 (394)
-...|...++..+-. .+ +..++....+.+ . +..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222222210 00 000010000000 0 000
Q ss_pred -CCCCCH--------hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 282 -GLKPKQ--------EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 282 -~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
...|++ ..|......+.+.+..++|...+.+... |-.. .|......+...|+.++|.+.|..+..++|
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 111111 1334455677788888888888887776 4444 777777788889999999999999999999
Q ss_pred CCCchHHHHHHHHhhcCCcccHHH--HHHHhhhccc
Q 016128 350 ENPTPFVILSNIYAGLGRWEDVGR--IRQMINDRQL 383 (394)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~ 383 (394)
+++.....++.++.+.|+..-|.. ++..+.+.+.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 999999999999999998888887 8888776553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-08 Score=90.78 Aligned_cols=234 Identities=11% Similarity=0.126 Sum_probs=183.8
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccC-------CChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016128 33 VHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGS-------RNILTWNTMIAGMMLNGRSEKAMELFEGLA 105 (394)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 105 (394)
=|++.+... |.+...|-..|......++.+.|++++++.... .-...|-++++.-...|.-+...++|++..
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 344444444 667889999999999999999999999998741 123568888888888888899999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CCHH
Q 016128 106 HEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN-KDES 184 (394)
Q Consensus 106 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 184 (394)
+. --.-..|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.. -...
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 85 223457888999999999999999999999876 3356788999999999999999999999998775322 2345
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSAC 261 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 261 (394)
.....+..-.+.|+.++++.+|+..... |...+.|+..++.-.+.|+.+.+..+|++....++.|.. ..|...+..-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 5566677778899999999999987665 778889999999999999999999999999998876643 3455555444
Q ss_pred HccCCHHHH
Q 016128 262 GHAGHVDKA 270 (394)
Q Consensus 262 ~~~~~~~~a 270 (394)
-+.|+-+.+
T Consensus 1682 k~~Gde~~v 1690 (1710)
T KOG1070|consen 1682 KSHGDEKNV 1690 (1710)
T ss_pred HhcCchhhH
Confidence 444554433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-07 Score=87.28 Aligned_cols=325 Identities=10% Similarity=-0.015 Sum_probs=206.7
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc---CC------Ch--hHHHHHHHHHHhcC
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG---SR------NI--LTWNTMIAGMMLNG 92 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------~~--~~~~~ll~~~~~~~ 92 (394)
.|++..+.++++.+.......+..........+...|++++|...+..... .. .. .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 345555555544432221122333334455566778999999998887642 11 11 11222334556789
Q ss_pred CHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHhhccch
Q 016128 93 RSEKAMELFEGLAHEGFKPD----PATWNSMISGFSQLGMRFEAFKLFEKMQST----GM-VPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~ 163 (394)
++++|...+++....-...+ ..+.+.+...+...|++++|...+++.... |. .+...++..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999998876311112 134456667788899999999999887642 11 1112344566677888999
Q ss_pred hhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC----CC--ChhhHHHHHHHHhhcC
Q 016128 164 LKLGKETHGHVIRA----DLN--K-DESMATALISMYMKCGQPSWARRFFDQFEIK----PD--DPAFWNAMISGYGRNG 230 (394)
Q Consensus 164 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~ 230 (394)
++.|...+++.... +.. + ....+..+...+...|++++|...+++.... .+ ....+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999988876542 211 1 2233445666777789999999998875432 11 1233555667788899
Q ss_pred ChhhHHHHHHHHHHcCCCC-CHhhH-----HHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHHHHHHhcC
Q 016128 231 EYESAVEIFDLMQQEKVKP-NSASF-----VAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMVDLLGRSG 301 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (394)
+++.|...+.+........ ....+ ...+..+...|+.+.|..++...... ..... ...+..+..++...|
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcC
Confidence 9999999998875431111 11111 11223445578999999998776542 11111 111345677888999
Q ss_pred cHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 302 RLDEARELIRELPE--------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 302 ~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
++++|...+++... ++.. +...+..++...|+.++|...+.++.+...
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999888764 1222 566677888999999999999999999774
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-08 Score=88.01 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=188.5
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+|-...-..+...+.+.|-...|..+|+++. .|.-++..|...|+..+|..+..+-.++ +||+..|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4444555678888999999999999999977 6777888999999999999998888875 7899999999988
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
....--+++|.++.+..-.. .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 88887889999888775432 11222223345789999999999887765 34677888888899999999999
Q ss_pred HHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 203 RRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.+.|...... |.+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++....
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999887665 6677889999999999999999999999999987 3356667777777889999999999998886543
Q ss_pred CCCCCHhhHHHHHHHHH
Q 016128 282 GLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~ 298 (394)
....|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 33345555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=94.48 Aligned_cols=233 Identities=11% Similarity=0.127 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHhhccchhhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHH
Q 016128 147 SLKCVTSVLSACADLSALKLGKETHGHVIRA-DLNK---DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 222 (394)
+...|-..|......++.++|.++.++++.. ++.- -..+|.++++.-...|.-+...++|++..+.......|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666677777777777777777776543 1111 23455666666666666677777777776654444557777
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc
Q 016128 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (394)
...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+...-..........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777665 23455667777777777777777777777776531111234445555566667777
Q ss_pred HHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC--CCCC-chHHHHHHHHhhcCCcccHHHHHH
Q 016128 303 LDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME--PENP-TPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 303 ~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
.+++..+|+.... |... .|+.+++.-.++|+.+.+..+|+++..+. |... ..|..++..--+.|+-+.++.+=.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 7777777777665 4444 77777777777777777777777777765 3222 234445555555566665555544
Q ss_pred Hhhh
Q 016128 377 MIND 380 (394)
Q Consensus 377 ~m~~ 380 (394)
++.+
T Consensus 1696 rA~E 1699 (1710)
T KOG1070|consen 1696 RAKE 1699 (1710)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-07 Score=82.63 Aligned_cols=226 Identities=15% Similarity=0.116 Sum_probs=152.8
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc------------CCChhHHHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG------------SRNILTWNTMIAGM 88 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~ll~~~ 88 (394)
|...|+.+.|.+-...++ +..+|..+.++|.+..++|-|.-.+-.|.. .++ .+-....-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 556788888877766555 456899999999999999999888877764 122 2222334445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
...|.+++|+.+|.+.+. |..|=+.|...|.|++|+++-+.=.+..+ ..||.....-+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 678999999999998876 44566788889999999988765443333 245555566666677888888
Q ss_pred HHHHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhc
Q 016128 169 ETHGHVI----------RAD---------LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229 (394)
Q Consensus 169 ~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (394)
+.|++.- +.. -..|...|..-...+-..|+.+.|+.+|..... |-.+++..|-.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIKCIQ 951 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeEeec
Confidence 7776432 111 112444455455555566777777777766655 56677777777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
|+.++|-.+-++- -|......|.+.|-..|++.+|..+|.+..
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7777777665442 255555567777878888888887776654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-07 Score=82.10 Aligned_cols=216 Identities=15% Similarity=0.169 Sum_probs=148.1
Q ss_pred HHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 016128 55 MYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132 (394)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 132 (394)
-+.+.|++.+|.-.|+.... +.+...|.-|.......++-..|+..+.+..+.... |..+.-.|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 35567888888888887654 346677888888888888888888888888876433 566777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-----------HHhhccchhhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 133 FKLFEKMQSTGMVPSLKCVTSVL-----------SACADLSALKLGKETHGHV-IRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 133 ~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
++.++.-+....+ |..+. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888776543211 00000 1122223344444444444 44444577778888888888888888
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 201 WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 201 ~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+|...|+..... |.|...||.|...++...+..+|+.-|++.++. .|+ ......|.-+|...|.+++|.+.|-..+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888888876554 667777888888888888888888888888775 444 2344456667788888888877765543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-08 Score=76.26 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=76.8
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.+... ..+-..+...|+-+....+........ .-|.......+......|++..|...+++... .-++|...|+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~ 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNL 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhH
Confidence 333333 334444444455554444444433221 11333333344445555555555555555543 33444555555
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (394)
+.-+|.+.|++++|..-|.+..+ |+.. ..+.+...+.-.|+.+.|..++.......+.++.+-..+..+....|+++
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 55555555555555555555444 3333 55555555555555555555555555555555555555555555555555
Q ss_pred cHHHH
Q 016128 370 DVGRI 374 (394)
Q Consensus 370 ~a~~~ 374 (394)
+|..+
T Consensus 220 ~A~~i 224 (257)
T COG5010 220 EAEDI 224 (257)
T ss_pred HHHhh
Confidence 55443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=78.91 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=54.0
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH-HhcCc--HHH
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL-GRSGR--LDE 305 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 305 (394)
.++.++++..+++..+.. +.|...|..+...|...|++++|...++...+. .+.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 344444444444444432 224444555555555555555555555544431 122333444444432 33343 245
Q ss_pred HHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 306 ARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 306 a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
|.+++++..+ |+.. .+..+...+...|++++|+..|+++.+..|++
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5555554443 3333 44444444445555555555555555544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=77.31 Aligned_cols=183 Identities=12% Similarity=0.078 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCCh---hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDP---AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFV 255 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 255 (394)
....+..+...+...|+++.|...|+++... |.++ ..+..+..++.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556666777777888888888888876554 3333 34566777788888888888888888765322111 1344
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHH
Q 016128 256 AVLSACGHA--------GHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLG 326 (394)
Q Consensus 256 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 326 (394)
.+..++... |+.++|.+.++.+.+. .|+. .....+... +...... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH----------HHHHHHHHH
Confidence 444444443 6788888888888753 3332 222222111 0011100 001224566
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENP---TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.+...|++++|+..++++.+..|.++ ..+..++.++.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999876654 67899999999999999999999887754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-08 Score=87.53 Aligned_cols=214 Identities=12% Similarity=-0.011 Sum_probs=170.2
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhc
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (394)
.-..+...+...|-...|..++++.. .+..++.+|...|+..+|..+..+..++++++..|..+.+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33455666777788888888887653 456688889999999999998888777788888888888888777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. -+....+|-.+.-+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHH
Confidence 7788888888765332 1112222233468899999998887753 234556788888888899999999999
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|..... |+.. .||++-.+|.+.|+..+|...+.++.+.+-.+..+|....-.....|.+++|.+.+.++.+.
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 988876 8888 99999999999999999999999999988888888888888899999999999999988764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-07 Score=78.18 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=90.0
Q ss_pred chHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCCh--hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 199 PSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEY--ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 199 ~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
+++++.+++++... |.+..+|+.....+.+.|+. ++++.+++++.+...+ +..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444443322 33333444333333333331 3444445444444322 44444444444444555555555555
Q ss_pred HchhcCCCCCCHhhHHHHHHHHHhc---Cc----HHHHHHHHHhCCC--CChh-hHHHHHHHHHhc----CCchHHHHHH
Q 016128 276 MMDDDFGLKPKQEHFGCMVDLLGRS---GR----LDEARELIRELPE--PTVS-VYHSLLGACWCH----LNSDLGEEMA 341 (394)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~----g~~~~a~~~~ 341 (394)
++.+. + +.+...|+.....+.+. |. .+++..+..+++. |+.. .|+.+...+... ++..+|.+.+
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 55442 1 22233333333222222 11 2345555544443 5555 777777666652 3445677777
Q ss_pred HHHHhhCCCCCchHHHHHHHHhhcC------------------CcccHHHHHHHhh
Q 016128 342 MKLQEMEPENPTPFVILSNIYAGLG------------------RWEDVGRIRQMIN 379 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 379 (394)
.++...+|.++.++..|+..|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 7777777878888888888887532 2356777777773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-07 Score=85.32 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCC----ChhHHHHHHHH
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSR----NILTWNTMIAG 87 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ll~~ 87 (394)
..|..|-..|+...+...|.+.|+...+.+ +.+...+....+.|+...+++.|..+.-...+.. -...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456666666666666667777777766655 5566666777777777777777777644333211 11123233444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhhccchhh
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS--VLSACADLSALK 165 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--l~~~~~~~~~~~ 165 (394)
|.+.++...|..-|+......++ |...|..++.+|...|++..|+++|.+.... .|+. +|.. ....-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 55666777777777766665443 6777777777888888888888877776553 3332 2222 222345667777
Q ss_pred HHHHHHHHHHH
Q 016128 166 LGKETHGHVIR 176 (394)
Q Consensus 166 ~a~~~~~~~~~ 176 (394)
++...+..+..
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-05 Score=70.66 Aligned_cols=318 Identities=12% Similarity=0.078 Sum_probs=188.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
+=++.+.+.|++++|.+...++.. +.+...+..-+-+.++.++|++|+.+.+.-... ..+..-+..=+.+..+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 345567788999999999999876 456677888888899999999999666542211 1111111122344557899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC---------------------------
Q 016128 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK--------------------------- 181 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------- 181 (394)
.++|+..++-+. ..+..+...-...+.+.|++++|..+|+.+.+.+...
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 999999888322 1233466667788999999999999999986543211
Q ss_pred CHHHHHH---HHHHHHHcCCchHHHHHHHHh--------hcCCCC---hh-----hHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 182 DESMATA---LISMYMKCGQPSWARRFFDQF--------EIKPDD---PA-----FWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 182 ~~~~~~~---l~~~~~~~g~~~~a~~~~~~~--------~~~~~~---~~-----~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
...+|.. ....+...|++.+|+++++.. .....+ .. .-..|.-.+...|+..+|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1112222 233456778999999998876 111111 11 1234555677789999999999888
Q ss_pred HHcCCCCCHhhH----HHHHHHHHcc---------------------------------------------CCHHHHHHH
Q 016128 243 QQEKVKPNSASF----VAVLSACGHA---------------------------------------------GHVDKALQI 273 (394)
Q Consensus 243 ~~~~~~~~~~~~----~~l~~~~~~~---------------------------------------------~~~~~a~~~ 273 (394)
.+... +|.... |.|+..-... +..+.+.++
T Consensus 251 i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77653 333221 1111110000 000111111
Q ss_pred HHHchhcCCCCCCHhhHHHHHHHHH--hcCcHHHHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHH---
Q 016128 274 FTMMDDDFGLKPKQEHFGCMVDLLG--RSGRLDEARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKL--- 344 (394)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~--- 344 (394)
-. ...+..|. ..+..++.... +...+.++.+++....+ |... +.-..++.....|+++.|++++...
T Consensus 330 ~a---~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 330 SA---SLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HH---hCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 00 01011222 22333333322 22235666676666655 4332 5555666677888888888888833
Q ss_pred -----HhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 345 -----QEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 345 -----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+.. ..|.+...+...+.+.++.+.|..++.+...
T Consensus 406 ~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 406 WKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred hhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 2222 3556777777778888888888888877654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-07 Score=83.49 Aligned_cols=237 Identities=10% Similarity=0.050 Sum_probs=116.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 155 (394)
+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++..++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4455666666666666666666666655544 333 22333333345555554443333 1 22
Q ss_pred HHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhh
Q 016128 156 SACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYES 234 (394)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 234 (394)
.......++..+..+...+...+ -+...+..+..+|-+.|+.++|...++++... |.++.+.|.+...|... +.++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22222333333333333333322 23335555666666666666666666665444 55666666666666666 6666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 235 AVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
|.+++.+.... +...+++..+..+|.++... .+.+...+-.+.+.....-....+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~-------- 222 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRL-------- 222 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchh--------
Confidence 66666665543 33344555555555555542 222222222222221111001111
Q ss_pred CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 315 EPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 315 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
..++-.+...|...++++++..+++.+.+.+|.|..+...++..|.
T Consensus 223 ---~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 ---VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1133334444555555555555555555555555555555555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-06 Score=78.26 Aligned_cols=135 Identities=18% Similarity=0.258 Sum_probs=78.9
Q ss_pred HHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
+.+.....+|.+|+.+++.+.........|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 444555667777777777766644444446667777777777777777765431 23445666777777777
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+.+|+.. +..|-++|..+..+++.
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHH
Confidence 777665554 33444555555555566666666666666555555332 23344444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-06 Score=71.56 Aligned_cols=206 Identities=11% Similarity=0.109 Sum_probs=125.9
Q ss_pred HHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH-
Q 016128 54 DMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNG-RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR- 129 (394)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~- 129 (394)
.++...++.++|+.+.+++.. +.+..+|+.--..+...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 334445667777777777654 223344555445555555 567777777777776444 555666555455555542
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCc----hH
Q 016128 130 -FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC---GQP----SW 201 (394)
Q Consensus 130 -~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 201 (394)
++++.+++++.+.. +-|..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56677777777654 236667777777777777777788777777776643 455555554444443 222 34
Q ss_pred HHHHH-HHhhcCCCChhhHHHHHHHHhhc----CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 202 ARRFF-DQFEIKPDDPAFWNAMISGYGRN----GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 202 a~~~~-~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
...+. +.+...|.+...|+-+...+... ++..+|.+.+.+..+.+ ..+...+..|+..|+.
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 55555 33455577888888887777763 34456777777766543 2356667777777764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-08 Score=72.49 Aligned_cols=122 Identities=11% Similarity=-0.072 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
.++++..+. .|+ .+..+...+...|++++|...|+.... --+.+...+..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555443 233 344566677778888888888888764 2344567777788888888888888888888776
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
|+.. .+..+..++...|++++|+..|+++.+..|.++..+.....+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5555 788888888888888888888888888888888877776665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-09 Score=56.42 Aligned_cols=32 Identities=44% Similarity=0.840 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 016128 108 GFKPDPATWNSMISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 108 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 139 (394)
|+.||..||+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-09 Score=57.39 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLT 37 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 37 (394)
|+.||..||++||.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-07 Score=85.32 Aligned_cols=161 Identities=8% Similarity=0.025 Sum_probs=123.6
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (394)
+.++..+-.|.....+.|.+++|..+++...+. .| +......++..+.+.+++++|...++.... .-+.+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 567888888999999999999999999998886 44 456677788888999999999999998886 3344566777
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
.+..++.+.|++++|..+|+++.. |+.. ++..+..++...|+.++|...|+++.+...+....|+.++. +.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 788888999999999999999885 5555 88888899999999999999999998877555555544432 33
Q ss_pred ccHHHHHHHhhhccc
Q 016128 369 EDVGRIRQMINDRQL 383 (394)
Q Consensus 369 ~~a~~~~~~m~~~~~ 383 (394)
..-..+++.+.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 333455555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=73.05 Aligned_cols=106 Identities=11% Similarity=-0.031 Sum_probs=91.8
Q ss_pred HHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 272 QIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.+++...+ +.|+ .+..+...+...|++++|...|+.... |+.. .|..+..++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555543 2344 455678889999999999999999876 6666 99999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 349 PENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
|.++.++..++.++.+.|++++|+..++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-05 Score=66.39 Aligned_cols=132 Identities=8% Similarity=0.087 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIA 86 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~ 86 (394)
+-|+.+|..||+-+..+ .++++++.++++...- +.++..|..-+..-....+++..+++|.+... .-+...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45889999999998777 9999999999998654 66788999999999999999999999999764 456777777776
Q ss_pred HHHhc-CCHHH----HHHHHHHHHh-cCCCCC-HHHHHHHHHHH---------HccCCHHHHHHHHHHHHh
Q 016128 87 GMMLN-GRSEK----AMELFEGLAH-EGFKPD-PATWNSMISGF---------SQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 87 ~~~~~-~~~~~----a~~~~~~m~~-~g~~p~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~m~~ 141 (394)
.--+. |+... ..+.|+-... .|+.+- ...|+..+..+ ..+.+.+...++|+++..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 54432 33222 3334444333 354442 23445444332 333455667777777764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-05 Score=61.83 Aligned_cols=259 Identities=15% Similarity=0.127 Sum_probs=163.9
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMI 85 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll 85 (394)
+..|+...|+ ++.+.-.|++..++..-....... .+...-..+.++|...|.+....+-...-. .+.......+.
T Consensus 5 ~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a 79 (299)
T KOG3081|consen 5 EAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLA 79 (299)
T ss_pred ccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHH
Confidence 3444433333 344555677777776555433321 334444455566767777665544443333 33444444444
Q ss_pred HHHHhcCCHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 86 AGMMLNGRSEK-AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 86 ~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
......++.++ ..++.+.+.......+......-...|...|++++|++...... +......=...+.+..++
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHH
Confidence 44444444433 33455555555444344444445567889999999998876621 333444445667788889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
+.|.+.+++|.+.. +..+.+.|..++.+ .+++.+|.-+|+++..+ +|++.+.+....++...|++++|..++
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 99999999998764 55666667776655 35688999999999884 888888888999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHchh
Q 016128 240 DLMQQEKVKPNSASFVAVLSACGHAGHV-DKALQIFTMMDD 279 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 279 (394)
+........ ++.+...++..-...|.. +-..+.+.+++.
T Consensus 231 ~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 231 EEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 998887544 677776666655555554 444556666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-07 Score=72.60 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=121.0
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-h---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHH
Q 016128 44 SDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-I---LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP--ATW 116 (394)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 116 (394)
.....+..+...+.+.|++++|...|+++.. .|+ . .++..+..++.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677777788888999999888888764 232 2 35667778888889999999999888876332111 245
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 117 NSMISGFSQL--------GMRFEAFKLFEKMQSTGMVPSL-KCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 117 ~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
..+..++... |++++|.+.|+++.+.. |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 5555555544 67788888888887652 332 22222111100 000 00 01112
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhcCCC----ChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 188 ALISMYMKCGQPSWARRFFDQFEIKPD----DPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
.+...|.+.|++++|...++......+ .+..+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466778899999999999998766522 3467889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-06 Score=64.67 Aligned_cols=250 Identities=15% Similarity=0.078 Sum_probs=150.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 167 (394)
+.-.|.+..++..-+...... -++..-.-+.++|...|++...+. +..... .|....+..+.......++.+..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 334566665555544433321 233333444556666665544322 222221 33333333333333334443333
Q ss_pred -HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 168 -KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
.++.+.+.......+......-...|+..|++++|.+..... .+......=+..+.+..+.+-|...+++|.+-
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 234444444443334344444456678888888888887762 34444444455667778888888888888874
Q ss_pred CCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-
Q 016128 247 VKPNSASFVAVLSACGH----AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS- 319 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~- 319 (394)
.+..|.+.|..++.+ .+.+..|.-+|+++.+ +.+|++.+.+....++...|++++|..++++... ++..
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 266777777777654 3567888889999876 5778888888888888888999999998888876 3444
Q ss_pred hHHHHHHHHHhcCCchH-HHHHHHHHHhhCCCCC
Q 016128 320 VYHSLLGACWCHLNSDL-GEEMAMKLQEMEPENP 352 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 352 (394)
+...++.+-...|...+ ..+.+..+....|..+
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666655555665544 4566677776667554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-05 Score=74.09 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+....+..-.|... ..|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345777777777777777776655321 266677777777777777777777766665554444433 456777
Q ss_pred hhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHH
Q 016128 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (394)
|++.+++.+.++++ ..|+......+..-|...|.++.|.-+|..+ ..|..|...+...|++..|.+
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHH
Confidence 77777766655544 2355555566666677777777776666443 348888888888899888887
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCC
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPT 317 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (394)
.-++. .+..||..+-.+|...+.+.-| +|..- ++-....-...++..|-..|-+++.+.+++....-.
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 65543 3667888888888776665443 23211 333445567788999999999999999998877622
Q ss_pred hh---hHHHHHHHHHhcCCchHHHHHHHHHHhh-C-C------CCCchHHHHHHHHhhcCCcccHHH
Q 016128 318 VS---VYHSLLGACWCHLNSDLGEEMAMKLQEM-E-P------ENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 318 ~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~------~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
.. .|+.|.-.|++- ++++..+.++-.... + | .....|..+...|.+-..|+.|.-
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 22 777777777664 456665555544431 1 1 244567888888888777777643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-06 Score=77.54 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=45.2
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
.....|.+|..+++.+..... -...|..+...|...|+++.|+++|-+... ++-.|..|.+.|+++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHH
Confidence 334445555555544443321 122334444455555555555555533222 34444455555555555554
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (394)
-.+.. |.......|..-..-+-..|++.+|++++
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 43322 22222333333333344444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-05 Score=65.37 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|-.+++.-.+..-...|..+|.++.+.+..+ +....++++..+|. ++.+.|.++|+.-.+. ...++.-....+..+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHH
Confidence 5566666666666777777777777766555 55566666666654 6677777777766653 223344445566666
Q ss_pred HhcCcHHHHHHHHHhCCC----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 298 GRSGRLDEARELIRELPE----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
...|+-..+..+|++... ++.. .|..++.--..-|+...+.++-++....-|
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 667777777777776654 2222 677777766777777777666665555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=69.18 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH-HhcCC--chHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC-WCHLN--SDLG 337 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~-~~~g~--~~~a 337 (394)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++... |+.. .+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666554 3345666777777777777777777777777765 5555 666666653 45555 4777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.++++++.+.+|.++.++..++..+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777776644
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-06 Score=74.87 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK 195 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (394)
|.-....+-..|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++ .-|......|.+.|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhh
Confidence 33333333444555555555544432 33444444555555555554433 1244444556666666
Q ss_pred cCCchHHHHHHHHh
Q 016128 196 CGQPSWARRFFDQF 209 (394)
Q Consensus 196 ~g~~~~a~~~~~~~ 209 (394)
.|++.+|..+|.+.
T Consensus 980 ~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRA 993 (1416)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666666553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-06 Score=80.21 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 179 LNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
...+...+..|.....+.|.+++|..+++.+... |.+...+..++..+.+.+++++|...+++..+.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3456888999999999999999999999998776 667777899999999999999999999999987532 56677788
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHH
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLL 325 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 325 (394)
..++.+.|++++|..+|+++.. ..+-+...+..+...+...|+.++|...|++..+ +....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8899999999999999999986 3334578889999999999999999999999876 4444555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.1e-06 Score=64.69 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=93.9
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcC
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNG 230 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 230 (394)
..+-..+...|+-+....+........ ..+......++....+.|++..|...|++.... |+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334444555555555555544433221 224445555666666667777777666665444 666666677777777777
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (394)
+.+.|..-|.+..+... -+...++.+.-.+.-.|+++.|..++...... -.-|..+-..+.......|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777776666666532 24455566666666667777777766666542 2234555566666666667777766665
Q ss_pred HhCCCC
Q 016128 311 RELPEP 316 (394)
Q Consensus 311 ~~~~~~ 316 (394)
..-..+
T Consensus 226 ~~e~~~ 231 (257)
T COG5010 226 VQELLS 231 (257)
T ss_pred cccccc
Confidence 554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-05 Score=70.47 Aligned_cols=293 Identities=14% Similarity=0.174 Sum_probs=168.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhH-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILT-----WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSM 119 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 119 (394)
|+...+.-+.++...+-..+-+++++++.-.+++.+ -|.|+-...+ -+...+.+..+++-.-+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------H
Confidence 455566667777777777777777777654443322 2333333333 234445555555443311 11 2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
.......+-+++|..+|++.. .+....+.|+. ..+.++.|.++-++. ..+.+|..+..+..+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCch
Confidence 233445556677777776542 23344444443 234455555544432 2456777788888888888
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 200 SWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
.+|.+.|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|...+ .|+-+|++.++..+.++++
T Consensus 1121 ~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi----- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI----- 1189 (1666)
T ss_pred HHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-----
Confidence 7777766433 5677788888888888888888888777776655555443 5677777777776655442
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHh-------------
Q 016128 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE------------- 346 (394)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------- 346 (394)
..|+......+..-|...|.++.|.-+|.... -|..|...+...|+++.|....+++-.
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS-----N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS-----NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 13555555556666666666666665554332 445555555555555555544444321
Q ss_pred -----------hC-CCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 347 -----------ME-PENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 347 -----------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
++ -....-+..|+..|...|-+++.+.+++..
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 11 112334556677777777777777776653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-05 Score=76.31 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNI-LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
+.+...+..|+..+...+++++|.++.+.... .|+. ..|-.+...+.+.++.+++..+ .++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 34566788888888888999999888886654 3433 3333344466666665554443 233
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
.......++.-+..++..|... .-+...+..+..+|.+.|+.+++..+++++++.+ +-++.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3334444554444445555543 2344566777777888888888888888887777 44777777788777777 778
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 201 WARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
+|.+++.+... .+...+++..+.++|.++....+. +...+. .+.+.+...
T Consensus 167 KA~~m~~KAV~-------------~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~ 216 (906)
T PRK14720 167 KAITYLKKAIY-------------RFIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH-------------HHHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhh
Confidence 88777665544 255566777777777777665321 222221 222222221
Q ss_pred CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 281 FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+..--..++..+...|...++++++..+++.+.+ |+.. ....++.+|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 12222334455555566666666666666666665 3333 5555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-06 Score=72.50 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=85.9
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...|++++|+..++.+.. ..+-|+.........+.+.|+.++|.+.++.+.. |+.. .+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456788888888888775 4445556666667778888888888888888776 6655 677777888888888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+.+++.....+|.++..|..|+.+|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 88888888888888888888888887777666665554444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-06 Score=64.42 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 126 LGMRFEAFKLFEKMQS---TG-MVPSLKC-VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
..+.++..+++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3455666666666542 22 3333322 2233334444455555555555544332 222222222222233344555
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 201 WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 201 ~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+|.++++.+... |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 555555544333 333333444444444444444454444444443 23344555555555555555555555554444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=68.91 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=111.0
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 269 (394)
.+...|++++|+..++.+... |.|+..+......+...++..+|.+.++++... .|+ ......+.+++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 445678888888888887665 667777777888888889999999999888876 455 4556677888888899988
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
|+.+++.... ..+.|+..|..|.++|...|+..++.....+ .+...|+++.|...+..+.+...
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE--------------~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE--------------GYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH--------------HHHhCCCHHHHHHHHHHHHHhcc
Confidence 8888888876 5667788888889999988888887755544 56778888888888888887664
Q ss_pred CC
Q 016128 350 EN 351 (394)
Q Consensus 350 ~~ 351 (394)
.+
T Consensus 457 ~~ 458 (484)
T COG4783 457 LG 458 (484)
T ss_pred CC
Confidence 33
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=67.70 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=69.5
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-- 315 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (394)
.+++....... +......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|..++++...
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444443211 3344555556666677777777777776542 234556666666777777777777777766654
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
|+.. .+..+..++...|++++|...++++.+..|.+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4443 6666666777777777777777777777765544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-07 Score=77.02 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=91.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++... |... .+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345556666677888888888888764 244 344567777777777788888777765 4444 66666777888
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-06 Score=63.63 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
....+...+...|++++|.+.|+.+.. |+.. .+..+..++...|++++|...++++.+.+|.++..+..++.++...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 344445555556666666666655543 3333 5555555555566666666666666566665666666666666666
Q ss_pred CCcccHHHHHHHhhhc
Q 016128 366 GRWEDVGRIRQMINDR 381 (394)
Q Consensus 366 g~~~~a~~~~~~m~~~ 381 (394)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-07 Score=66.17 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=83.2
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
....-.+...+...|++++|..+|+-+.. |... -|-.|..++...|++++|+..|.++..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455566677889999999999998765 6666 88889999999999999999999999999999999999999999
Q ss_pred hcCCcccHHHHHHHhhhcc
Q 016128 364 GLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~ 382 (394)
..|+.+.|++.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-06 Score=64.95 Aligned_cols=201 Identities=13% Similarity=0.177 Sum_probs=149.2
Q ss_pred ccchhhHHHHHHHHHHH---cC-CCCCH-HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChh
Q 016128 160 DLSALKLGKETHGHVIR---AD-LNKDE-SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 233 (394)
...+.++..+++.+++. .| ..++. .+|..++-+....|+.+.|...++++... |.+...-..-.-.+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 34577888888888754 23 34443 45566777778889999999999998776 334333222233455689999
Q ss_pred hHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 234 SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+|+++|+.+.+.+ +.|..++..=+...-..|+--+|++-+....+ .+..|...|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999886 34666776666666667887788888888877 67889999999999999999999999999988
Q ss_pred CC--CChh-hHHHHHHHHHhcC---CchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 314 PE--PTVS-VYHSLLGACWCHL---NSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 314 ~~--~~~~-~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.- |-.. .+..+...+...| +.+.+.++|.+++++.|.+...+..+-..+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 75 6666 6667776655444 6778899999999999866666555544433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-05 Score=71.55 Aligned_cols=350 Identities=13% Similarity=0.002 Sum_probs=194.1
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIE-KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
+..........+++..+++.|..+.-..-+.. ...-...|....-.|...++...|+.-|+.... +.|...|..+..
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGe 604 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGE 604 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34556677788888889998888722222111 111222344455567788999999999998764 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHh
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNS--MISGFSQLGMRFEAFKLFEKMQST------GMVPSLKCVTSVLSAC 158 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~ 158 (394)
+|.+.|++..|++.|.+.... .|+. +|.. ..-.-+..|.+.+|+..+...... +..--..++-.+...+
T Consensus 605 AY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~ 681 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDS 681 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999988875 4432 2222 233456789999999998887542 1111122333333334
Q ss_pred hccchhhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCC
Q 016128 159 ADLSALKLGKETHGHVIRA-------DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (394)
.-.|-...+..+++..++. ....+...+-.+ ..|..+|-+....-++......+..-.-..+.
T Consensus 682 ~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 682 AITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 4444444444444443321 111111111111 22333343333111222222222221222222
Q ss_pred h---h---hHHHHHHHHHHcCCCCCHhhHHHHHHHHHc--------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 232 Y---E---SAVEIFDLMQQEKVKPNSASFVAVLSACGH--------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 232 ~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
. + -+.+.+-.-.. ...+..+|..++..|.+ ..+...|+..+....+ -...+..+|+.|.-.
T Consensus 752 l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl- 826 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL- 826 (1238)
T ss_pred CcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-
Confidence 1 1 11111111111 12234444444443332 1122355555555543 223344555555443
Q ss_pred HhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHH
Q 016128 298 GRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRI 374 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 374 (394)
...|++.-|...|-+-.. |... +|..+...+.+..+++.|...|.++..++|.|...|......-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 555677777666654443 5555 8888888888888888888888888888888888887777777777766666666
Q ss_pred HHH
Q 016128 375 RQM 377 (394)
Q Consensus 375 ~~~ 377 (394)
|.-
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.9e-06 Score=70.28 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.....|+..+...++++.|..+|+++... ++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 34455666677778888999999988874 45556667888888888888999988888653 3366666667777888
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.++++.|..+.+++.. -.+.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8999999999988875 3333456888899999999999999988888864
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=59.46 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=41.6
Q ss_pred HHhhccchhhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChh
Q 016128 156 SACADLSALKLGKETHGHVIRADLNKD--ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 156 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (394)
..+...|++++|...|+.+......++ ......|...+...|++++|...++.....+..+..+......|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 344445555555555555544432111 112233445555555555555555554433334444455555555555555
Q ss_pred hHHHHHHH
Q 016128 234 SAVEIFDL 241 (394)
Q Consensus 234 ~a~~~~~~ 241 (394)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.1e-07 Score=48.53 Aligned_cols=33 Identities=45% Similarity=0.851 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD 112 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 112 (394)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-07 Score=47.84 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP 111 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 111 (394)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-06 Score=71.21 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred hcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 016128 41 EKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRN-----ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPAT 115 (394)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 115 (394)
+.+.+......+++.+....+++.+..++.+....|+ ..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3466777788888888888899999999998886432 34567999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998777777778887777777655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-05 Score=57.20 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=37.6
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 224 SGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
..+...|++++|...|+........|.. .....+...+...|++++|...++.... -...+..+......|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 4444455555555555555544311111 1222334444455555555555544321 1222333444444555555
Q ss_pred cHHHHHHHHHh
Q 016128 302 RLDEARELIRE 312 (394)
Q Consensus 302 ~~~~a~~~~~~ 312 (394)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=57.79 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+..+...+...|++++|...+++..+ |+.. .+..+...+...|++++|.+.++.+....|.++..+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44556667777788888877777654 4443 66677777777888888888888888888877778888888888888
Q ss_pred CcccHHHHHHHhhhc
Q 016128 367 RWEDVGRIRQMINDR 381 (394)
Q Consensus 367 ~~~~a~~~~~~m~~~ 381 (394)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0028 Score=58.99 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=130.2
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHH--HHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHH
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDM--YLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKA 97 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a 97 (394)
...+++..|.+..+.+.+.. |+.. |...+.+ ..+.|+.++|..+++.... ..|..|...+-..|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35678888888888877653 3332 2233333 4577999999988887664 34777888888889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc----------hhhHH
Q 016128 98 MELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS----------ALKLG 167 (394)
Q Consensus 98 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 167 (394)
..+|++..+. .|+..-...+..+|.+.+.+.+-.+.--+|-+. .+-+...|.++++...+.- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988876 567777777778888887776544444444332 3334555556665553321 12345
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHH-hhcC--CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 168 KETHGHVIRAD-LNKDESMATALISMYMKCGQPSWARRFFDQ-FEIK--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
...++.+.+.+ ..-+..=...-...+...|++++|..++.. .... +.+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666665544 111111111223334556778888888733 2221 1222223344455555555555555555555
Q ss_pred HcC
Q 016128 244 QEK 246 (394)
Q Consensus 244 ~~~ 246 (394)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0011 Score=61.62 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG--FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
.....+++.+|++....+.++ .|+.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 344566777777777776665 33332 2222222 45667777777766666554433 666777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
++|..+|+...... |+......+..+|.+.+.+.+
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 77777777776653 445555556666666665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.4e-06 Score=58.72 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=53.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTV---S-VYHSLL 325 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l~ 325 (394)
++..++..+...|++++|...+..+.....- ......+..+..++.+.|++++|...|+.+.. |+. . ++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555666666666666666543111 11123444455566666666666666665543 331 1 455555
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.++...|+.++|...++++.+..|+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 55555666666666666666666555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=46.98 Aligned_cols=33 Identities=36% Similarity=0.685 Sum_probs=29.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS 147 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 147 (394)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=46.87 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (394)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=74.21 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=89.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.-...+...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..++++.. |+.. .|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3455667889999999999999863 344567888888999999999999999999977 6666 8999999999999
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
++++|+..|+++.+++|.++.....+..+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998877776555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-06 Score=65.61 Aligned_cols=103 Identities=16% Similarity=0.046 Sum_probs=57.5
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~ 338 (394)
.+.+++++|...|.+.++ -.+-|...|..-..+|.+.|.++.|.+-.+..+. |... +|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 445566666666666553 1223344445555566666666666666655555 3333 6666666666666666666
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 339 EMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+.|+++++++|.+......|-.+-.+.+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 6666666666666544444444444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-07 Score=59.71 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHhCCC--CC--h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHH
Q 016128 301 GRLDEARELIRELPE--PT--V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 301 g~~~~a~~~~~~~~~--~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 375 (394)
|+++.|+.+++++.+ |+ . ..+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444555555554443 31 1 1333345555555555555555555 3444444444444455555555555555555
Q ss_pred HH
Q 016128 376 QM 377 (394)
Q Consensus 376 ~~ 377 (394)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00023 Score=63.47 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=51.0
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHH---
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSL--- 324 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l--- 324 (394)
..+...+...+.+...+..|.++|..|-+ ...++......+++.+|..+-++.++ |++. .|...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 34444444445555556666666666542 13455566666777777766666665 3333 22222
Q ss_pred -------HHHHHhcCCchHHHHHHHHHHh
Q 016128 325 -------LGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 325 -------~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
-.+|.+.|+..+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2567778888888888887755
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.1e-05 Score=61.96 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh-cCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK-CGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
.+|..+++.+.+.+.++.|+.+|.+..+.+ ..+..+|.....+-.. .++.+.|..+|+.... +.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 578899999999999999999999998654 3345556555555344 5677779999999776 67788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDP----ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
...|+.+.|..+|++.... .|.. ..|...+..=.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 9999999999999999876 3333 48888998888999999999999888774 344333333433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-05 Score=56.00 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh----hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHH
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTV----SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN---PTPFVILS 359 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 359 (394)
++..++..+.+.|++++|.+.|+.+.. |+. ..+..+..++...|+++.|...++.+....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666666666666666654 332 144455666666666666666666666655543 33455666
Q ss_pred HHHhhcCCcccHHHHHHHhhhc
Q 016128 360 NIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-05 Score=64.31 Aligned_cols=255 Identities=15% Similarity=0.012 Sum_probs=117.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccch
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSA 163 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~ 163 (394)
...+.+..++.+|+..+...++.++. +..-|..-+..+...|++++|+--.++-.+. .|. .....-.-+++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34455667777788888777776443 4555666666677777777776655554432 111 1122233333333444
Q ss_pred hhHHHHHHH---------------HHHHcCC-CCCHHHHHHH-HHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHH-
Q 016128 164 LKLGKETHG---------------HVIRADL-NKDESMATAL-ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISG- 225 (394)
Q Consensus 164 ~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~- 225 (394)
..+|.+.++ ....... +|.-..+..| ..++...|+.++|.+.--.+.+. .....+..++++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl-d~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL-DATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc-ccchhHHHHhccc
Confidence 444433333 1111111 1111222211 23445556666666555444432 111112333332
Q ss_pred -HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH---HHH----------HHccCCHHHHHHHHHHchhcCCCCC-----C
Q 016128 226 -YGRNGEYESAVEIFDLMQQEKVKPNSASFVAV---LSA----------CGHAGHVDKALQIFTMMDDDFGLKP-----K 286 (394)
Q Consensus 226 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~-----~ 286 (394)
+-..++.+.++..|++.+.. .|+...-... ... ..+.|.+..|.+.+.+.+ ++.| +
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~n 286 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTN 286 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchh
Confidence 23355666666666665553 2333222111 111 124455555555555554 2222 2
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
...|........+.|+..+|+.--++..+.|.. .+..-..++...+++++|++-++++.+..
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 233333344444555555555555555553333 22222334444555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.3e-06 Score=52.28 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=35.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...+...|++++|++.|+++++..|.++..+..++.++.+.|++++|...++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-05 Score=67.36 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=82.7
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.....+...|+++.|++.|+++.+... -+...|..+..+|...|++++|+..++.+... -+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345567788999999999999998753 36778888899999999999999999999863 234567888899999999
Q ss_pred CcHHHHHHHHHhCCC--CChhhHHHH
Q 016128 301 GRLDEARELIRELPE--PTVSVYHSL 324 (394)
Q Consensus 301 g~~~~a~~~~~~~~~--~~~~~~~~l 324 (394)
|++++|...|++... |+.......
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999886 666643333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.9e-05 Score=52.30 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGF-KPDPATWNSMISGFSQLG--------MRFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566778888888888888887 778888888777766542 23345666677776667777777776
Q ss_pred HHHHhh
Q 016128 154 VLSACA 159 (394)
Q Consensus 154 l~~~~~ 159 (394)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.6e-05 Score=63.26 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc---CCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH---LNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
+-|...|-.|...|...|+++.|..-|.+... |+.. .+..+..++... ....++..+++++...+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 55677888888888888888888888887765 4444 666666555432 34567788888888888888888888
Q ss_pred HHHHHhhcCCcccHHHHHHHhhhccccccCCCC
Q 016128 358 LSNIYAGLGRWEDVGRIRQMINDRQLTKLPGIS 390 (394)
Q Consensus 358 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 390 (394)
|+..+...|++.+|...|+.|.+.....+|..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 888888888888888888888887665555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-06 Score=52.49 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=53.4
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+...+.+.|++++|...|+++.+ |+.. .+..+..++...|++++|...|+++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56778999999999999999988 7777 999999999999999999999999999999874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00014 Score=60.92 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=70.3
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH-HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA-CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|.++|+...+ .++.+...+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 35555555555555666666666665432 1123333333333 2223555556666666665 344455556666666
Q ss_pred HHhcCcHHHHHHHHHhCCC--CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 297 LGRSGRLDEARELIRELPE--PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+.+.|+.+.|..+|++... +... .|...+..-.+.|+.+.+..+.+++.+.-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666666655 2221 6666666666666666666666666665554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-05 Score=52.24 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++..... .+.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHH
Confidence 34444444555555555555544432 112233444444444445555555544444331 122223334444444444
Q ss_pred CcHHHHHHHHHh
Q 016128 301 GRLDEARELIRE 312 (394)
Q Consensus 301 g~~~~a~~~~~~ 312 (394)
|++++|...+..
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=7e-06 Score=52.47 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC-CcccHHHHHHHhhhc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG-RWEDVGRIRQMINDR 381 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 381 (394)
+|..+...+...|++++|+..|+++++.+|.++.++..++.++.+.| ++++|++.+++..+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67788888888888999999999988888888888888888888888 788888888887653
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=43.16 Aligned_cols=29 Identities=34% Similarity=0.692 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEG 108 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 108 (394)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0056 Score=52.69 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=95.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|..+++.-.+..-.+.|..+|-++.+.| +.++...+++++..++. |+...|..+|+.-... ++.++.-.+..+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 5556666667777888999999998888 66778888888887765 8888888888876653 333344445667777
Q ss_pred HhcCcHHHHHHHHHhCCC---CCh-h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 298 GRSGRLDEARELIRELPE---PTV-S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~---~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
.+.++-..|..+|+...+ .+. . .|..++.--...|+...+..+-+++.+.-|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 888888899999986554 221 2 7888888888888888888777777776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00022 Score=64.78 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=94.7
Q ss_pred CCChhhHHHHHHHHhhc-----CChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHcc--------CCHHHHHHHHHHch
Q 016128 213 PDDPAFWNAMISGYGRN-----GEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGHA--------GHVDKALQIFTMMD 278 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 278 (394)
+.++..|...+++.... ++...|..+|++..+. .|+ ...+..+..++... .+...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56778888888875432 2367899999999886 344 34444443333221 12334444444433
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.......++..|..+.......|++++|...+++... |+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2212344556777776667778999999999998887 65448888889999999999999999999999987774
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=49.73 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=67.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccc--------hhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 117 NSMISGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSVLSACADLS--------ALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 117 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677999999999999999999 999999999999887643 3456778999999999999999999
Q ss_pred HHHHHHHH
Q 016128 188 ALISMYMK 195 (394)
Q Consensus 188 ~l~~~~~~ 195 (394)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=56.28 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=86.2
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (394)
.....+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+++.... .+.+...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 3444577777788888888888888888876543332 356777778888888888888888887753 223455566
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
.+...+...|+...+..-++... ..+++|.++++++.+.+|++ +..++.-+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66667777776655543332211 12567788888888888766 4445554444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0016 Score=54.85 Aligned_cols=57 Identities=7% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHhhcc-chhhHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCchHHHHHHHHhh
Q 016128 154 VLSACADL-SALKLGKETHGHVIRADL---NK--DESMATALISMYMKCGQPSWARRFFDQFE 210 (394)
Q Consensus 154 l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 210 (394)
+...|... |+++.|.+.|++..+.-- .+ -...+..+...+.+.|++++|.++|+++.
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33445555 677777777666543210 00 12233444555555556666665555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00029 Score=51.94 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
.....+...+...|++++|.++|+.+..- |.+...|-.|..++...|++++|+..|.......+ -|+..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33444566677788899999888887654 66677788888888888999999999988887764 47777888888888
Q ss_pred ccCCHHHHHHHHHHchhcCC
Q 016128 263 HAGHVDKALQIFTMMDDDFG 282 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~ 282 (394)
..|+.+.|.+.|+......+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc
Confidence 88999999888888776533
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0008 Score=56.59 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=10.9
Q ss_pred HHHHHccCCHHHHHHHHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m 139 (394)
...|...|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 34455566666666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=79.5
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccH
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDV 371 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 371 (394)
.-+.+.+++++|+..|.+.++ |... .|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 346678999999999999998 6665 8888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 016128 372 GRIRQMINDR 381 (394)
Q Consensus 372 ~~~~~~m~~~ 381 (394)
++.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999887754
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=50.04 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=54.0
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC-CchHHHHHHHHHHhhCC
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL-NSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 349 (394)
+...|..+...+...|++++|+..|++..+ |+.. .|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456778888888889999999999988887 7666 8888888999988 78999999999888876
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=52.68 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccchhhHHHHHHHH
Q 016128 127 GMRFEAFKLFEKMQSTGMV-PSLKCVTSVLSACADLSALKLGKETHGH 173 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 173 (394)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555554443211 1222233344444444444444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.98 E-value=5e-05 Score=58.44 Aligned_cols=93 Identities=13% Similarity=-0.077 Sum_probs=69.8
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC---hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PT---VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (394)
....+..+...+...|++++|...|++... |+ .. ++..+...+...|++++|+..++++....|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 345566667777778888888888877753 22 22 7788888888889999999999998888888888888887
Q ss_pred HHHh-------hcCCcccHHHHHHHh
Q 016128 360 NIYA-------GLGRWEDVGRIRQMI 378 (394)
Q Consensus 360 ~~~~-------~~g~~~~a~~~~~~m 378 (394)
.++. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777 777877666665544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=1e-05 Score=42.15 Aligned_cols=30 Identities=40% Similarity=0.811 Sum_probs=22.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGM 144 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 144 (394)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888887777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0037 Score=47.06 Aligned_cols=132 Identities=12% Similarity=0.146 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC---CChhhHH
Q 016128 144 MVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP---DDPAFWN 220 (394)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 220 (394)
+.|+...--.|..+....|+..+|...|++....-+..|..+...+.++....+++..|...++.+.+.+ .+++..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4566666667777777788888888888777776666677777777777777788888888777765542 3445556
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
.+.+.+...|.+.+|..-|+..... -|+...-......+.++|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6677777788888888888777765 344444444445556667666655544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0092 Score=51.49 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=44.8
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+..+|++.++.-.-.-+.+..| ++.+|..++.++....++++|..++..+..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3457888888887777888888 999999999999999999999999987754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=55.91 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=59.8
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH----------
Q 016128 66 HNVFQELKG-SRNILTWNTMIAGMML-----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR---------- 129 (394)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---------- 129 (394)
...|++... ..+-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHh
Confidence 345555422 5677777777777764 36777777888888888888899999988888765 222
Q ss_pred -------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 130 -------FEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 130 -------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
+-|++++++|...|+.||..++..+++.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 33444444444444444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=62.37 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=102.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE--GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT 152 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (394)
+.+......++..+....+++.+..++-+.... ....-..|.+++++.|.+.|..++++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345566777888888888899999999988875 333345566799999999999999999999999999999999999
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998877777777776666665555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0018 Score=52.83 Aligned_cols=181 Identities=13% Similarity=0.073 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhh---HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAF---WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
....-.....+...|++++|.+.|+.+... |.++.. .-.++.++.+.+++++|...+++..+..+.-....+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 333333455566678888888888887665 333222 2345667778888888888888887764332223333333
Q ss_pred HHHHc--cC---------------C---HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCCh
Q 016128 259 SACGH--AG---------------H---VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTV 318 (394)
Q Consensus 259 ~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 318 (394)
.+.+. .+ + ..+|...|+.+.+. |=.+.-..+|...+..+...-.
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHH
Confidence 33321 10 1 12344444444442 2222223344333333321000
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 319 SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP---TPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 319 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
..--.+.+-|.+.|.+..|+.-++.+++.-|..+ .++..++.+|.+.|..++|..+...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1112455668888999999999999998776554 456777888999999999988776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0064 Score=49.66 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=36.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHh
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLK-PKQEHFGCMVDLLGRSGRLDEARELIRE 312 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (394)
.+...|.+.|.+..|..-++.+.+++.-. ........++.+|.+.|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44556677777777777777777654322 2344555666777777777777665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0039 Score=52.99 Aligned_cols=334 Identities=10% Similarity=-0.041 Sum_probs=172.9
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~ 98 (394)
+.+..++..|+..+...++.. +.+..-|..-...+...|++++|.--.+.-.. +.....+...-..+...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 444556666666666666555 33455555555555556666666555444332 111222222333333333333443
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHhhccchhhHHHHHHHHHHH
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPSLKCVTSV-LSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
+.++ +...| ....++..++....... +|...++..+ ..++...|+.++|.++--.+.+
T Consensus 138 ~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 138 EKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 3333 11111 11223333333332221 2333444433 3445667778877777666666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh-------------HHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF-------------WNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
.+.. +......=..++--.++.+.|...|++.....|+-.. |..=.+-..+.|++..|.+.|.+.+
T Consensus 198 ld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 198 LDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred cccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 5421 2222111122333456677777777776553222111 2222344568899999999999987
Q ss_pred HcC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC
Q 016128 244 QEK---VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE--PT 317 (394)
Q Consensus 244 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 317 (394)
... ..|+...|........+.|+.++|+.--+...+ +.+. ...+..-..++...++|++|.+-|+...+ .+
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 643 455666777777788899999999998877763 2222 12233334466678899999999988775 22
Q ss_pred --hh-hHHHHHHHHHhcCCchHHHHHHHHHHh-hCCCCCchHHHHHHHHh---hcCCcccHHHHHHHhhh
Q 016128 318 --VS-VYHSLLGACWCHLNSDLGEEMAMKLQE-MEPENPTPFVILSNIYA---GLGRWEDVGRIRQMIND 380 (394)
Q Consensus 318 --~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~ 380 (394)
+. ++.....++-+..+.+. ..++.-... ...+...+|..+.-++- ..|.-.+|+..|++.-.
T Consensus 354 ~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 354 CEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred cchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 22 44444444433322211 111111111 11223345555544433 34555677777776543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00046 Score=48.99 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCCHhhHHHHHHHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPKQEHFGCMVDLL 297 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 297 (394)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....+.- +.+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888888775543 245666777788888888888888877764111 01222233344566
Q ss_pred HhcCcHHHHHHHHHhCCCCChhhHHHHHHH
Q 016128 298 GRSGRLDEARELIRELPEPTVSVYHSLLGA 327 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 327 (394)
...|+.++|...+-....++...|..-+..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888877655443333334333333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-05 Score=51.38 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=38.6
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
...|++++|++.|+++.+..|.++..+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356777777777777777777777777777777777777777777777766543
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00061 Score=52.60 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIKPDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAV 257 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (394)
....+..+...+...|++++|...|++.....++ ...+..+...+.+.|++++|...+++..+... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 3456777888899999999999999987654222 35688899999999999999999999988632 256667777
Q ss_pred HHHHHccCCHHHHH
Q 016128 258 LSACGHAGHVDKAL 271 (394)
Q Consensus 258 ~~~~~~~~~~~~a~ 271 (394)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77888777754433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0035 Score=56.87 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=15.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGL 104 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 104 (394)
.|.+..|..+.......-.++.|+..|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 445555555555555555555555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.02 Score=52.59 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=80.8
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGAC 328 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 328 (394)
...-+.+--+.-+...|+-.+|.++-.+++ -||-..|-.=+.+++..+++++-+++-+.... ..-|.-.+.+|
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c 754 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEAC 754 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHH
Confidence 344455555666677788888888777664 37777888788888888888888887777664 34677788888
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 375 (394)
.+.|+.++|..++.+.-. +.....+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 888888888887655411 125677788888888777654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0028 Score=47.70 Aligned_cols=124 Identities=11% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC---hhhHH
Q 016128 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT---VSVYH 322 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~ 322 (394)
.|+...-..|..+....|+..+|...|++...- -+.-|..+.-.+.++....+++..|...++.+-+ |. ....-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 344444445555566666666666666665542 2344555555556666666666666666655544 11 11333
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
.+.+.+...|++..|+..|+.+....| ++..-......+.+.|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 344555556666666666666655554 33444444455555555544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.5e-05 Score=49.32 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..+.+.+++++|.+.++++...+|.++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456667777777777777777777777777777777777777777777777776544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0033 Score=57.26 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555432 34455555555555555555555555555444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0011 Score=50.94 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP--DPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555556666666666666666665542222 1235666666666677777777766666553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=46.01 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHH
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTM 84 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 84 (394)
.+.|++++|.+.|+.+.+.. |.+..+...+..+|.+.|++++|..+++++.. .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35677888888888877765 55777777788888888888888888887765 4553444333
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=49.09 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFG-LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
..|...+....+...++.|.++|-++.+. + ..+++.++++++..++ .|+..-|..+|+--.. ||+. --+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777788889999999999887 5 6788888899888665 5888899999987665 7777 34456667
Q ss_pred HHhcCCchHHHHHHHHHHhhCC--CCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEP--ENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+...++-+.|..+|+..++.-. .-...|..++.--..-|+...+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7788899999999996665332 2256788888888888888777766666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=52.96 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 296 LLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
-+...|++++|..+|+-+.. |... -|..|..++...+++++|+..|..+..++++||.+....+.++...|+.+.|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 34566777777777765543 3333 55666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHhhh
Q 016128 373 RIRQMIND 380 (394)
Q Consensus 373 ~~~~~m~~ 380 (394)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0019 Score=51.27 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC-CC---ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK-PD---DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH- 263 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 263 (394)
....+...|++++|...|+.+... |. .+...-.++.++.+.|+++.|...+++..+.-..-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 444556677777777777776554 22 2233555666777777777777777776665322111222222222211
Q ss_pred ------------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 016128 264 ------------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCH 331 (394)
Q Consensus 264 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (394)
.+...+|...|+.+. .-|=.+.-..+|...+..+.+.=...--.+...|.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111223333343333 3333333444444433333210000112345667888
Q ss_pred CCchHHHHHHHHHHhhCCCCCc---hHHHHHHHHhhcCCcccHH
Q 016128 332 LNSDLGEEMAMKLQEMEPENPT---PFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~ 372 (394)
|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888888776553 3566777788888776443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.027 Score=47.88 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=73.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
.+.-+.-+...|+...|.++-++.. .|+..-|..-+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 4455666677777777776655542 46777788888888888888877665432 123466777888888
Q ss_pred hcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 016128 299 RSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888887743 2556666777777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0029 Score=49.13 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----------------chhhHHH
Q 016128 110 KPDPATWNSMISGFSQ-----LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL----------------SALKLGK 168 (394)
Q Consensus 110 ~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 168 (394)
..+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3477888888888764 477888888999999999999999999999987542 2456788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 016128 169 ETHGHVIRADLNKDESMATALISMYMKCGQ 198 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 198 (394)
+++++|...|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00039 Score=57.19 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=64.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh----hHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----VYHSLL 325 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 325 (394)
.|...+..+.+.|++++|...|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+.+ |+.. .+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556778888888887776421111 134566677777777888888777777764 4322 444455
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
.++...|+.+.|...|+++.+..|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666677777777777777777777654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=46.48 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
..|.+.+++++|.++++++.. |+.. .|.....++...|++++|.+.++++.+..|.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 567888999999999998887 6666 88888888999999999999999999999877655443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.034 Score=47.34 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=86.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWC 330 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 330 (394)
..+.+..+.-|...|+...|.++-.+. ++ |+...|..-+.+++..++|++..++... +..+.-|..++.+|.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLK 249 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHH
Confidence 345666677778889988888876665 33 7888999999999999999999987665 3344699999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888762 22566777888888888876643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00055 Score=48.58 Aligned_cols=88 Identities=20% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC---hh-hHHHHHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPK--QEHFGCMVDLLGRSGRLDEARELIRELPE--PT---VS-VYHSLLGAC 328 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~-~~~~l~~~~ 328 (394)
+..++-..|+.++|+.+|+..... |.... ...+-.+...+...|++++|..+|++... |+ .. ....+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445566777778888887777765 55443 23455566677777777777777776654 44 22 333334456
Q ss_pred HhcCCchHHHHHHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~ 345 (394)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.011 Score=50.73 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-----ChhhHHHHHHHHhh---cCChhhHHHHHHHHHHcCCCCCHhhHH
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIKPD-----DPAFWNAMISGYGR---NGEYESAVEIFDLMQQEKVKPNSASFV 255 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (394)
.+...++-+|....+++.-.++++.+...|. .+..-....-++.+ .|+.++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3334455567777777777777777766421 11122233444555 778888888887765555667777777
Q ss_pred HHHHHHHc---------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc-HH---HHHHHH---Hh------C
Q 016128 256 AVLSACGH---------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR-LD---EARELI---RE------L 313 (394)
Q Consensus 256 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~---~~------~ 313 (394)
.+...|-. ....++|+..|.+.-+ +.|+...--.++-.+...|. .+ +..++- .. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77766532 1236677777766543 34444332222222333332 11 222222 11 1
Q ss_pred CC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 314 PE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 314 ~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.+ .+-..+.+++.++.-.|++++|.+.++++.+..|+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11 223377788899999999999999999999887654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.042 Score=46.72 Aligned_cols=287 Identities=15% Similarity=0.126 Sum_probs=153.7
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHH--HhcCChhHHHHHHHHhccCCChhH--HHHHHHHHHhcCCHHHHHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMY--LKCGCLPCAHNVFQELKGSRNILT--WNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~ 100 (394)
||-..|+++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|...|.... ...|.-..-+.|+.+.|...
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4444555444332211 233444444444332 235788888888888775443322 22233333456777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHhh---ccchhhHHHHHHHHH
Q 016128 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG-MVPSLK--CVTSVLSACA---DLSALKLGKETHGHV 174 (394)
Q Consensus 101 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~ 174 (394)
-++....-.. -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+-. -..+...|...-.+.
T Consensus 177 Ae~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7666554222 35567777777888888888888877655432 333332 1222332211 112445555554444
Q ss_pred HHcCCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCC-CH
Q 016128 175 IRADLNKDES-MATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE-KVKP-NS 251 (394)
Q Consensus 175 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~ 251 (394)
.+.. |+.. .-..-..++.+.|+..++-.+++.+=+..|.+..+...+ +.+.| +.+..-+++..+. .++| +.
T Consensus 256 ~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~g--dta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSG--DTALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcCccch
Confidence 4432 2221 112234567777788888888777766555555543322 22333 3444444443321 1233 34
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH-hcCcHHHHHHHHHhCCC-CChhhHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG-RSGRLDEARELIRELPE-PTVSVYH 322 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-~~~~~~~ 322 (394)
.+...+..+-...|++..|..--+... ...|....|..|.+.-. ..||-.++...+.+... |.+..|.
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 555566667777777777766655554 34666667766666544 34777777777776665 4444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.021 Score=45.44 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 306 (394)
+...|.+.|.+..|..-++.+.+++.-.+. ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 556677777777777777777765322221 23445566677777776644
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=52.32 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=77.0
Q ss_pred HhhHHHHHH---HHHccCCHHHHHHHHHHchhcCCCC--CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHH
Q 016128 251 SASFVAVLS---ACGHAGHVDKALQIFTMMDDDFGLK--PKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLL 325 (394)
Q Consensus 251 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 325 (394)
...|..++. .....++.+.+...++.+...+.-+ ++... ..-.......+++.. ..+...++
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~---~~~~~~l~ 69 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY---LDALERLA 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344444433 3345677888888887777644211 11111 011111111222110 12556677
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-----ccccccCCC
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND-----RQLTKLPGI 389 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 389 (394)
..+...|++++|++.++.+...+|.+...+..++.+|...|+..+|.++++++.. .|+.|++.+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 7888999999999999999999999999999999999999999999999988743 588887653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.046 Score=46.49 Aligned_cols=288 Identities=15% Similarity=0.114 Sum_probs=181.8
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHH
Q 016128 80 TWNTMIAGMM--LNGRSEKAMELFEGLAHEGFKPDPATWNSMIS--GFSQLGMRFEAFKLFEKMQSTGMVPSLKC--VTS 153 (394)
Q Consensus 80 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ 153 (394)
-|..|-.+++ -.|+-..|.++-.+-.+. +..|......++. +-.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3555555554 356777777776655432 2234444444443 334569999999999999752 22221 222
Q ss_pred HHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhh--HHHHHHHHh-
Q 016128 154 VLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK---PDDPAF--WNAMISGYG- 227 (394)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~--~~~l~~~~~- 227 (394)
|.-...+.|+.+.|..+-+..-..-.. -.......+...+..|+++.|+++++.-... .++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333335678888888887777655422 3456677888899999999999999864432 222211 122222211
Q ss_pred --hcCChhhHHHHHHHHHHcCCCCCHhh-HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHH
Q 016128 228 --RNGEYESAVEIFDLMQQEKVKPNSAS-FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLD 304 (394)
Q Consensus 228 --~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (394)
-.-+...|...-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+. .|.+.+....+ +.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH
Confidence 12345555555555444 4555432 233456788999999999999999854 66666655443 44566532
Q ss_pred HH--H--HHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc-CCcccHHHHHHHh
Q 016128 305 EA--R--ELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL-GRWEDVGRIRQMI 378 (394)
Q Consensus 305 ~a--~--~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m 378 (394)
.. . +-++.|. |+.. +.-.+..+....|++..|..-.+.+....| ....|..|.+.-... ||-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 22 1 2234444 4444 788888888899999999888888888888 447888888876654 9999999998887
Q ss_pred hhc
Q 016128 379 NDR 381 (394)
Q Consensus 379 ~~~ 381 (394)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0054 Score=50.15 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=72.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC---cHHHHHHHHHhCCC--CChh-hHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG---RLDEARELIRELPE--PTVS-VYH 322 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~--~~~~-~~~ 322 (394)
-|...|..|...|...|+++.|..-|....+- ..+++..+..+..++.... +..++..+|+++.. |++. +..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 37778888888888888888888888877652 3345556666666554432 34577788888776 5555 666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.|...+...|++.+|...|+.+.+..|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 77777888888888888888888877765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.01 Score=47.37 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHH-----
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATA----- 188 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 188 (394)
...+.++.++.-.|.+.-.+..+.+.++...+.++.....+.+.-.+.||.+.|...++...+..-..+..+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 455677777888888888888888888876666777888888888889999999988887766544444433333
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (394)
....|.-.+++..|...+.++... +.++..-|.-.-+..-.|+..+|++.++.|.+. .|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 334456667888888888887665 566666666666666778999999999999886 344433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0006 Score=57.69 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=121.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPDP----ATWNSMISGFSQLGMRFEAFKLFEKM--QST--GMV-PSLKCVTSVLS 156 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m--~~~--~~~-~~~~~~~~l~~ 156 (394)
.-+++.|+...-..+|+...+.|-. |. ..|..|..+|.-.+++++|+++...= ... |-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478889999999999998887654 43 34566667777778888888765331 111 100 01122334444
Q ss_pred HhhccchhhHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHHcCCc--------------------hHHHHHHHH---
Q 016128 157 ACADLSALKLGKETHGH----VIRADLN-KDESMATALISMYMKCGQP--------------------SWARRFFDQ--- 208 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~--- 208 (394)
.+--.|.+++|.-...+ ..+.|-. .....+..+...|...|+- +.|.++|.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44555666666543322 2222211 1233344466666555431 122222221
Q ss_pred hhcC----CCChhhHHHHHHHHhhcCChhhHHHHHHHH----HHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 209 FEIK----PDDPAFWNAMISGYGRNGEYESAVEIFDLM----QQEKVK-PNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 209 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
+... ......|..|.+.|--.|+++.|+..-+.- .+.|-+ .-...+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 0000 011122444444444455555555443321 122211 1123445555555555555555555554321
Q ss_pred c---CC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 280 D---FG-LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--------PTV-SVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 280 ~---~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
- .| -.....+..+|...|.-..++++|+.++++-.. ... ..+.+|..++...|..++|+.+.+..++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0 01 111223334445555555555555555443321 111 1444555555555555555555555444
Q ss_pred hC
Q 016128 347 ME 348 (394)
Q Consensus 347 ~~ 348 (394)
..
T Consensus 344 ~s 345 (639)
T KOG1130|consen 344 SS 345 (639)
T ss_pred HH
Confidence 44
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.019 Score=45.91 Aligned_cols=229 Identities=12% Similarity=0.140 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCC----------------hhHHH-HHHHH--HHhcCCHHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRN----------------ILTWN-TMIAG--MMLNGRSEKAMELFEGLA 105 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----------------~~~~~-~ll~~--~~~~~~~~~a~~~~~~m~ 105 (394)
..|+.-+.++.+....++|..-++...+ .|+ ...|. .++.+ .-..|...+.+.-+..+.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3566777888888888888776665543 121 11222 12222 334566666655555444
Q ss_pred hcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH
Q 016128 106 HEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM 185 (394)
Q Consensus 106 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 185 (394)
.. -...+.-+......+..++++++-.. ...+.++.++.-.+.+.-....+.++++...+.++..
T Consensus 150 ~~--------V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 150 TV--------VSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HH--------HHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 31 11233333333344666777765432 3456777888888899999999999999887888999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcC--CCChhhHH-----HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIK--PDDPAFWN-----AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
...|++.-.+.|+.+.|...|++..+. ..+...++ .....|.-.+++..|...+.+....+.. |+...|.-.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKA 293 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKA 293 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHH
Confidence 999999999999999999999976544 12222223 3334566778899999999888776422 444444433
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHH
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (394)
-+..-.|+...|.+.++.+... .|.+.+-++++
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~---~P~~~l~es~~ 326 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQ---DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCccchhhhHH
Confidence 3444568999999999999854 66666555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=54.43 Aligned_cols=269 Identities=10% Similarity=0.015 Sum_probs=164.6
Q ss_pred ChHHHHHHHHH--hhhhHhHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHhcCChhHHHHHHHH-------hcc-C
Q 016128 10 NSVTFISVISA--CASLLYLQFGRQVHGLTLKIEKQSD----TMIGTALVDMYLKCGCLPCAHNVFQE-------LKG-S 75 (394)
Q Consensus 10 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-~ 75 (394)
+...|...+.+ +++.|+......+|+..++.| .-| ..+|..|..+|.-.+++++|++.-.. +.. .
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 34455554443 889999999999999999988 333 44677778888888999999887532 111 1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHH----HHHhcCCC-CCHHHHHHHHHHHHccCC--------------------HH
Q 016128 76 RNILTWNTMIAGMMLNGRSEKAMELFE----GLAHEGFK-PDPATWNSMISGFSQLGM--------------------RF 130 (394)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~----~m~~~g~~-p~~~~~~~l~~~~~~~~~--------------------~~ 130 (394)
....+-..|...+--.|.+++|+-.-. -..+.|-+ ....++..+...|...|+ ++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 122333344455555677777654322 22222211 133455556666654432 23
Q ss_pred HHHHHHHHHHh----CCC-CCCHHHHHHHHHHhhccchhhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHHcCCch
Q 016128 131 EAFKLFEKMQS----TGM-VPSLKCVTSVLSACADLSALKLGKETHGHVI----RADLN-KDESMATALISMYMKCGQPS 200 (394)
Q Consensus 131 ~a~~~~~~m~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~ 200 (394)
.|.++|.+-.+ .|- -.--..|..|.+.|.-.|+++.|....+.-. +.|-. .....+..+.+++.-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 45555544221 110 0112356667777777889998887655432 22211 12355677888899999999
Q ss_pred HHHHHHHHh-------hcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCHhhHHHHHHHHHccCCHH
Q 016128 201 WARRFFDQF-------EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ----EK-VKPNSASFVAVLSACGHAGHVD 268 (394)
Q Consensus 201 ~a~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~ 268 (394)
.|.+.|+.. ........+.-+|.+.|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 999888753 22223344466778888888888899888775432 11 1224567888899999999999
Q ss_pred HHHHHHHHchh
Q 016128 269 KALQIFTMMDD 279 (394)
Q Consensus 269 ~a~~~~~~~~~ 279 (394)
+|..+.+...+
T Consensus 333 kAl~fae~hl~ 343 (639)
T KOG1130|consen 333 KALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHH
Confidence 98887765543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=53.70 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC-CCHhhHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPN--SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK-PKQEHFGCMVD 295 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~ 295 (394)
|...+..+.+.|++++|+..|+.+.+...... ...+..+...|...|++++|...|+.+.+.+... .....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444445666666666666655421110 1344455555666666666666666665432111 12233334445
Q ss_pred HHHhcCcHHHHHHHHHhCCC
Q 016128 296 LLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~ 315 (394)
.+...|+.++|..+|+++.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55556666666666655543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=60.27 Aligned_cols=98 Identities=11% Similarity=-0.015 Sum_probs=68.5
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
.+...++.+..+|.+.|++++|+..|++..+ |+.. +|..+..+|...|+.++|++.++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 4566788888899999999999999988776 6654 4888889999999999999999998887421 22211
Q ss_pred HH--HHhhcCCcccHHHHHHHhhhccccc
Q 016128 359 SN--IYAGLGRWEDVGRIRQMINDRQLTK 385 (394)
Q Consensus 359 ~~--~~~~~g~~~~a~~~~~~m~~~~~~~ 385 (394)
.. .+....+..+..++++.+...|...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1112234446777777777766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0079 Score=44.96 Aligned_cols=71 Identities=18% Similarity=0.347 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKCV 151 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 151 (394)
....++..+...|++++|.++.+.+....+. |...|..+|.+|...|+...|++.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4555667777888888888888888877433 777888888888888888888888887643 3777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=9.6e-05 Score=39.15 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=30.1
Q ss_pred HHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 341 AMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
|+++++.+|+++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00037 Score=39.62 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
++..+..+|...|++++|++.|+++++..|+++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778899999999999999999999999999988887764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00043 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=9.2
Q ss_pred HHHHHHHHhhcCCcccHHHHHHH
Q 016128 355 FVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
+..++.++...|++++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333344444444444444433
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00017 Score=47.22 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=51.3
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
..+++.+...|...|++++|+..|++..+ |+.. ++..+..++...|++++|++.++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788899999999999999999988764 3333 8899999999999999999999998764
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.032 Score=41.60 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=65.2
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVD 268 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (394)
..-+...|++++|..+|.-+... +.++..|..|..++...+++++|+..|......+. -|+..+-....++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33445678888888888876554 56777788888888888888888888887665543 25555556677788888888
Q ss_pred HHHHHHHHchh
Q 016128 269 KALQIFTMMDD 279 (394)
Q Consensus 269 ~a~~~~~~~~~ 279 (394)
.|...|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887775
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=55.67 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=97.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCC----CCC---------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFG----LKP---------KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS- 319 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~- 319 (394)
.-...+.+.|++..|..-|+....-.. .++ -..++..|.-++.+.+++.+|++..+...+ |+..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 345788899999999999988654211 111 133566778889999999999999888876 5444
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc-HHHHHHHhhhc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED-VGRIRQMINDR 381 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 381 (394)
..-.-.+++...|+++.|+..|+++++..|.|..+-..++.+-.+...+.+ ..++|..|-..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777778999999999999999999999999998888888887776655554 47788888653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0086 Score=43.04 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=44.9
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 246 KVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
...|+..+..+++.+|+..+++..|.++++.+.+.|+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3678889999999999999999999999999999989888888888888743
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.055 Score=42.94 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC------CChh-hHHHHHHHHHhcCCchHHHHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE------PTVS-VYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
|-..|-.+.-..|+..|...++.-.. ++.. +...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33444445555667777777766322 3333 666666665 445555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.034 Score=39.47 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=88.6
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (394)
+.-.|..++..++..+..... +..-++-+|.-....-+-+-..+.++.+-+.+.+.+- .-...++..|.+.|...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~s- 86 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLS- 86 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchH-
Confidence 345677888888888877652 5555666666666666666677777777554333221 12234455555444322
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 306 ARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 306 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
...+..+..+...|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.++++++.+.|++
T Consensus 87 -------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 -------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 234555677888999999999999988777778999999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.041 Score=49.87 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=113.5
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHHc----cCCHHHHHHHHHHchhcCCCCCC
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNS-----ASFVAVLSACGH----AGHVDKALQIFTMMDDDFGLKPK 286 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 286 (394)
.....++....-.||-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.+++..+.++ -|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 345677777778899999999888876643 22111 123334443332 45788899999999864 455
Q ss_pred HhhHH-HHHHHHHhcCcHHHHHHHHHhCCC-----CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 287 QEHFG-CMVDLLGRSGRLDEARELIRELPE-----PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 287 ~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
...|. .-.+.+...|+.++|.+.|++... +... .+--+.-.+.-..++++|...+.++.+...-+...|..+
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 54443 345667788999999999997664 2222 555566677888999999999999999887777777666
Q ss_pred HHH-HhhcCCc-------ccHHHHHHHhhhc
Q 016128 359 SNI-YAGLGRW-------EDVGRIRQMINDR 381 (394)
Q Consensus 359 ~~~-~~~~g~~-------~~a~~~~~~m~~~ 381 (394)
.-+ +...|+. ++|.+++.++...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 544 5577888 8888888887664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0053 Score=52.22 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHc-----CCCCC---------HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQE-----KVKPN---------SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP 285 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (394)
..-.+.|.+.|++..|...|++.... +..+. ..++..+..++.+.+++..|+..-...+. --++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~ 289 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPN 289 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCC
Confidence 34456788889999999998887553 11111 13466677778888999999988888875 2345
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc-hHHHHHHHHHHhhC
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS-DLGEEMAMKLQEME 348 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~ 348 (394)
++.....=..++...|+++.|+..|+++.+ |+.. +-+.++..-.+.... +...++|..|...-
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566666667788889999999999998887 7776 555555444443333 33355666665533
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.13 Score=41.50 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
.-.+.|++++|.+.|+.+... |.+ ..+--.++-++-+.++++.|+..+++..+.-..-....|...+.++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 344567777777777776654 222 2234445555666777777777777766543322223343344433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.29 Score=45.19 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.|.+..|..+.......-.++.|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 5666777777666666666666666665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0041 Score=50.16 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=52.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CChh-hHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPKQEHFGCMVDLLGRSGRLDEARELIRELPE-----PTVS-VYHSLL 325 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~~l~ 325 (394)
.|+.-+..+ +.|++..|...|....+.|.- .-.+..+--|..++...|++++|..+|..+.+ |... .+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444443 345566666666666653211 11123344456666666666666666655544 2222 444455
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.+..+.|+.++|...|+++.+..|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5555666666666666666666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.02 Score=41.63 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTV---S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
....+.|++++|.+.|+.+.. |-. . .--.++.++.+.+++++|...+++.+++.|.++.+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 334455666666666666654 211 1 45556667777777777777777777777666544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.027 Score=40.52 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 016128 109 FKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST-GMVPSLKCVTSVLS 156 (394)
Q Consensus 109 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~ 156 (394)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555555555555555555555555554432 34444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.071 Score=48.35 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHE-GFKPD-----PATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVT 152 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (394)
.++....=.||-+..++.+.+..+. |+.-. .-+|+..+..+.. ....+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444455555555555554432 22211 1123333332222 23445566666665553 34444443
Q ss_pred HH-HHHhhccchhhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC-hhhHHHHH-HHH
Q 016128 153 SV-LSACADLSALKLGKETHGHVIRAD---LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDD-PAFWNAMI-SGY 226 (394)
Q Consensus 153 ~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~-~~~ 226 (394)
.. .+.+...|++++|.+.++...... .......+--+.-.+.-.+++++|...|..+.+...- ..+|.-+. .++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 22 334455566666666666443211 0112222333455566666666666666666553222 22222222 223
Q ss_pred hhcCCh-------hhHHHHHHHH
Q 016128 227 GRNGEY-------ESAVEIFDLM 242 (394)
Q Consensus 227 ~~~~~~-------~~a~~~~~~~ 242 (394)
...|+. ++|.++|.+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHH
Confidence 345555 6666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0089 Score=42.17 Aligned_cols=86 Identities=21% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCCc---hHHHHHHHHhhcCCcc
Q 016128 297 LGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME-PENPT---PFVILSNIYAGLGRWE 369 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~ 369 (394)
+...|+.+.|++.|.+... |... .||.-.+++.-.|+.++|++-+++++++. |.... .|..-+..|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4445555555555555544 3333 55555555555555555555555555543 22211 2333344455555555
Q ss_pred cHHHHHHHhhhcc
Q 016128 370 DVGRIRQMINDRQ 382 (394)
Q Consensus 370 ~a~~~~~~m~~~~ 382 (394)
.|..-|+.....|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555544433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0076 Score=52.53 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=66.8
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ----EHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSL 324 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 324 (394)
.+...++.+..+|...|++++|+..|+...+ +.|+. ..|..+..+|...|+.++|+..+++..+-....|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3567889999999999999999999999884 35664 3588899999999999999999999876322233211
Q ss_pred HH--HHHhcCCchHHHHHHHHHHhhC
Q 016128 325 LG--ACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 325 ~~--~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.. .+....+.++..++++.+.+-+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhC
Confidence 11 0111223345555555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.21 Score=40.42 Aligned_cols=223 Identities=17% Similarity=0.089 Sum_probs=134.7
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccchhhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCchHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMV-PSLKCVTSVLSACADLSALKLGKETHGHVIRA-DLNKDESMATALISMYMKCGQPSWAR 203 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 203 (394)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555666666665554222 12456666677777777777777777776652 22344555666666677777777777
Q ss_pred HHHHHhhcCCCCh-hhHHHHHH-HHhhcCChhhHHHHHHHHHHcCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 204 RFFDQFEIKPDDP-AFWNAMIS-GYGRNGEYESAVEIFDLMQQEKV--KPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
..+.......++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777766542222 22233333 67777888888888887754221 11233344444445666777777777777765
Q ss_pred cCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC-hhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 280 DFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PT-VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 280 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
. .+. ....+..+...+...++++.|...+..... |+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2 222 355666667777777777777777777766 33 124444444444556677777777777777665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.33 Score=42.41 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=37.2
Q ss_pred ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 215 DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP---NSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
...+|..++..+.+.|+++.|...+.++.+.+... ++.....-+...-..|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666777777777777776666543111 223333344455556666777766666654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.2 Score=44.38 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=68.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChh--hHHHHHHHHH
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVS--VYHSLLGACW 329 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~--~~~~l~~~~~ 329 (394)
..+..++.+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+-.+ |... +|+..+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4566777889999999999999987533323455778899999999999999999888764 4555 6776554433
Q ss_pred hcCCc---------------hHHHHHHHHHHhhCC
Q 016128 330 CHLNS---------------DLGEEMAMKLQEMEP 349 (394)
Q Consensus 330 ~~g~~---------------~~a~~~~~~~~~~~~ 349 (394)
..++. ..|.+.+.++.+.+|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 33331 245677888887665
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.4 Score=41.95 Aligned_cols=333 Identities=13% Similarity=0.069 Sum_probs=157.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcC----CchHHHHHHHHHHHhcCChh--------HHHHHH-------HHhcc-
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQ----SDTMIGTALVDMYLKCGCLP--------CAHNVF-------QELKG- 74 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~--------~A~~~~-------~~~~~- 74 (394)
+..+..+...|++.+++.+++++...-.+ -+..+|+.++-+++++--++ -+...+ .++..
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 56667778889999999888887765444 78888888777776542111 111111 11110
Q ss_pred --------CCChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 016128 75 --------SRNILTWNTMIAGMMLN--GRSEKAMELFEGLAHEGFKPDPA-TWNSMISGFSQLGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 75 --------~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 143 (394)
-|.......++....-. .+..--.++++.-...-+.|+.. ....+...+.+ +.+++..+.+.+....
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~ 289 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK 289 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh
Confidence 01111111122111111 11111223333333333444422 22333333333 5566666555554332
Q ss_pred CCC----CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHH----cCCchHHHHHHHH
Q 016128 144 MVP----SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL-------ISMYMK----CGQPSWARRFFDQ 208 (394)
Q Consensus 144 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~----~g~~~~a~~~~~~ 208 (394)
+.+ =..+|..++....+.++...|.+.+.-+.-.. |+..+-..+ -+..+. .-+...=..+++.
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 211 23467777777788888888877777665443 222211111 111110 0112222334444
Q ss_pred hhcCCCChhh-HHHHH---HHHhhcCC-hhhHHHHHHHHHHcCCCCCHhhHHH----HHHHHHc---cCCHHHHHHHHHH
Q 016128 209 FEIKPDDPAF-WNAMI---SGYGRNGE-YESAVEIFDLMQQEKVKPNSASFVA----VLSACGH---AGHVDKALQIFTM 276 (394)
Q Consensus 209 ~~~~~~~~~~-~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~~~~~~a~~~~~~ 276 (394)
+.....|..- -..|+ .-+-+.|. -++|+++++...+-. .-|...-+. +=.+|.+ ...+.+-..+-+-
T Consensus 368 ~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4332111111 11122 22344454 677888888776642 123322222 2223332 2334444444333
Q ss_pred chhcCCCCCC----HhhHHHHHH--HHHhcCcHHHHHHHHHhC--CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 277 MDDDFGLKPK----QEHFGCMVD--LLGRSGRLDEARELIREL--PEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 277 ~~~~~~~~~~----~~~~~~l~~--~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
+.+. |++|- ...-|.|.+ .+...|++.++.-.-.=+ ..|...+|..+.-++....++++|..++..+
T Consensus 447 i~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L---- 521 (549)
T PF07079_consen 447 ITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL---- 521 (549)
T ss_pred HHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC----
Confidence 3333 66653 233444443 345677877775432222 2365558888877777777888887776653
Q ss_pred CCCCchHHH
Q 016128 349 PENPTPFVI 357 (394)
Q Consensus 349 ~~~~~~~~~ 357 (394)
|+|..++..
T Consensus 522 P~n~~~~ds 530 (549)
T PF07079_consen 522 PPNERMRDS 530 (549)
T ss_pred CCchhhHHH
Confidence 445555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.37 Score=44.11 Aligned_cols=217 Identities=11% Similarity=0.083 Sum_probs=122.9
Q ss_pred HHHHHHhhhhHhHH--HHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccC-CChhHHHH-----HHH
Q 016128 15 ISVISACASLLYLQ--FGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGS-RNILTWNT-----MIA 86 (394)
Q Consensus 15 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~-----ll~ 86 (394)
+..-.+|.+-++.. +..--++++++.|-.|+... +...++-.|++.+|-++|.+-..+ +-...|+- +..
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 34444555444432 33334556666775576643 445566789999999999886531 11222221 123
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------HHhCCCC---CCHHHHHHHHHH
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEK------MQSTGMV---PSLKCVTSVLSA 157 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~~---~~~~~~~~l~~~ 157 (394)
-+...|..++-..+..+-.+. .-|..--.+....+...|+.++|..+.-+ +.+.+-+ .+..+...+..-
T Consensus 679 E~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 344455554444443332211 00111112345566777888877765422 1222212 233445555555
Q ss_pred hhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh-----------HHHHHHHH
Q 016128 158 CADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF-----------WNAMISGY 226 (394)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~l~~~~ 226 (394)
+.+...+..|-++|..+-.. ..++......++|.+|..+-++.++-.+++.. |...-.+|
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 56677778888888876432 34677788889999999999888775444322 33344567
Q ss_pred hhcCChhhHHHHHHHHHHc
Q 016128 227 GRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~ 245 (394)
.+.|+..+|..+++++...
T Consensus 828 hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhcchHHHHHHHHHhhhh
Confidence 7888888888888887554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.025 Score=45.83 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHhcc-CCChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC------------
Q 016128 66 HNVFQELKG-SRNILTWNTMIAGMML-----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG------------ 127 (394)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~------------ 127 (394)
...|..... +.|-.+|-..+..+.. .+.++-.-..++.|.+-|+.-|..+|+.|+..+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 344444442 4566777777766653 3567777778888999999999999999998775432
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 128 ----MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 128 ----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+-+-+++++++|...|+.||..+-..+++++.+.+.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224467788888888888888888888888877664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.24 Score=40.72 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=18.8
Q ss_pred cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 196 CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 196 ~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
.|++.+|...|...... +.+...--.++.+|...|+.+.|..++..+
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444444444433222 223333334444444444444444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=46.21 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=88.8
Q ss_pred HHHHhcCCHHHHHHHHH--HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 86 AGMMLNGRSEKAMELFE--GLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
....-.++++++.++.+ ++.. .+ +..-.+.+++.+.+.|..+.|+++-..- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 34445677777666554 1111 11 2444667777777777777777654321 1 11223345567
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++.|.++.++ ..+...|..|.....+.|+++-|+..|.+... |..|+-.|...|+.+...++.+...
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 7766665433 23566777888888888888888888877766 6777777777787777777776666
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
..|- ++....++...|+.++..+++...
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5542 344445555567777777766554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.037 Score=44.84 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVK--PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVD 295 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 295 (394)
|+.-+.. .+.|++..|...|....+.... -....+-.|..++...|+++.|..+|..+.+.++-.|. +..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444433 3445566666666666654311 11223444666666666666666666666654433332 355556666
Q ss_pred HHHhcCcHHHHHHHHHhCCC
Q 016128 296 LLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~ 315 (394)
...+.|+.++|..+|+++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666666655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.095 Score=38.19 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHhhCCCCC
Q 016128 334 SDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~ 352 (394)
...|...|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777777777777654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.077 Score=44.73 Aligned_cols=224 Identities=13% Similarity=0.022 Sum_probs=114.7
Q ss_pred ccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhhccchhhHHHHHHHH----HHHcC-CCCCHHHHHHHHHHHHHcC
Q 016128 125 QLGMRFEAFKLFEKMQST--GMVPSLKCVTSVLSACADLSALKLGKETHGH----VIRAD-LNKDESMATALISMYMKCG 197 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~g 197 (394)
...+.++|+..+.+-... ...-.-.++..+..+.++.|.++++...--. ..+.. -..--..|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444322 1111223555666666677766665533221 11110 0011233444555555555
Q ss_pred CchHHHHHHHHhhcCCC------ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHccCC
Q 016128 198 QPSWARRFFDQFEIKPD------DPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-----VKPNSASFVAVLSACGHAGH 266 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 266 (394)
++.+++.+-..-...|. .....-++..++...+.++++++.|+...+.- ....-..+..|...|....+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 55555555444322211 11223446667777778888888888765421 11123567777778888888
Q ss_pred HHHHHHHHHHchh---cCCCCCCHhhHH-----HHHHHHHhcCcHHHHHHHHHhCCC-----CChh----hHHHHHHHHH
Q 016128 267 VDKALQIFTMMDD---DFGLKPKQEHFG-----CMVDLLGRSGRLDEARELIRELPE-----PTVS----VYHSLLGACW 329 (394)
Q Consensus 267 ~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~ 329 (394)
+++|.-+..+..+ .+++..-..-|. .+.-++...|+.-.|.+.-++..+ -|.. ....+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8887766554432 223222222222 233355566666666666555543 2222 3445556677
Q ss_pred hcCCchHHHHHHHHHHhhC
Q 016128 330 CHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~ 348 (394)
..|+.+.|..-|+.+....
T Consensus 258 ~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hcccHhHHHHHHHHHHHHH
Confidence 7777777777776655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.4 Score=40.28 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHHHhhccchhh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-ChhhHHHHHHH
Q 016128 150 CVTSVLSACADLSALK---LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPAFWNAMISG 225 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 225 (394)
++..++.++...+..+ +|..+++.+.+... -.+.++..-+..+.+.++.+.+.+.+.+|..... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4455555555554433 34444444433321 1234444445555556666666666666655422 23334444444
Q ss_pred Hhh--cCChhhHHHHHHHHHHcCCCCCH
Q 016128 226 YGR--NGEYESAVEIFDLMQQEKVKPNS 251 (394)
Q Consensus 226 ~~~--~~~~~~a~~~~~~~~~~~~~~~~ 251 (394)
+.. ......+...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 311 12233455555554444344433
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.21 Score=43.99 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=101.1
Q ss_pred hhH--HHHHHHHhhc-----CChhhHHHHHHHHHH-cCCCCC-HhhHHHHHHHHHc---------cCCHHHHHHHHHHch
Q 016128 217 AFW--NAMISGYGRN-----GEYESAVEIFDLMQQ-EKVKPN-SASFVAVLSACGH---------AGHVDKALQIFTMMD 278 (394)
Q Consensus 217 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 278 (394)
..| ..++.+.... ...+.|..+|.+... +...|+ ...|..+..++.. ..+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 6666655442 235677888888872 223444 3444444433321 223445666666665
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch-
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP- 354 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 354 (394)
+ --+.|+.....+..+..-.|+++.|..+|++... |+.. +|......+.-.|+.++|.+.++++.+++|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 2345677777777777888889999999998876 7777 77777777777899999999999999999865543
Q ss_pred -HHHHHHHHhhcCCcccHHHHHH
Q 016128 355 -FVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 355 -~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
....+..|... ..++|++++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 33334345553 5666776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=35.86 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=21.1
Q ss_pred cCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016128 59 CGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGL 104 (394)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 104 (394)
.|.+++..++..+...+.+..-||-+|--....-+-+-..+.++..
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsI 60 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSI 60 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHH
Confidence 4555666666655554444444555554444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.38 Score=40.60 Aligned_cols=125 Identities=11% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh--c----CChhHHHHHHHHhcc------CCChhHHHHHHHHHHhcCC-
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK--C----GCLPCAHNVFQELKG------SRNILTWNTMIAGMMLNGR- 93 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~------~~~~~~~~~ll~~~~~~~~- 93 (394)
++....+++.+.+.|+..+..+|-+..-.... . ....+|.++++.|+. .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55566666667766666666555443333222 1 134455566666654 1233344444333 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 94 ---SEKAMELFEGLAHEGFKPDPA--TWNSMISGFSQLGM--RFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 94 ---~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
.+.++..|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 234445555555555444322 22222221111111 2345555555555555555444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.44 Score=39.29 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=67.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
....|++.+|..+|....... +-+...-..+..++...|+.+.|..++..+-...-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 334455555555555544332 1123334444555555555555555555442221111111122234444455555555
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhHHHHHHHHHccC
Q 016128 203 RRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASFVAVLSACGHAG 265 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 265 (394)
..+-.++...|.|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555555555666666666666666666666666555544321 113333444444444444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.17 Score=39.54 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=82.5
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.-+..||-|.--+...|+++.|.+.|+...+.+..-+-...|.-|.. .--|+++.|.+-+...-..-.-.|-...|-.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 555666777777777777777777777777765433332333332322 2346777776655554432122222222322
Q ss_pred HHHHHHhcCcHHHHH-HHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-------CchHHHHHHHHhh
Q 016128 293 MVDLLGRSGRLDEAR-ELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-------PTPFVILSNIYAG 364 (394)
Q Consensus 293 l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~ 364 (394)
++. ..-++.+|. .+.++....+..-|...+..+.- |+.. ...+++++.+...++ ..+|..|+.-+..
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 221 223444554 33444444444444433333221 1111 122333333322222 2467777777777
Q ss_pred cCCcccHHHHHHHhhhcc
Q 016128 365 LGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~ 382 (394)
.|+.++|..+|+..+..+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 888888888777766543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.55 Score=44.33 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI----SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
...-+..+.+...++-|+.+-+. .+. +..+...++ ..+.+.|++++|...|-+.... +.|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34456666777777777666543 222 333333333 3455778888888877666543 3332 3455
Q ss_pred HhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHH
Q 016128 157 ACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
-+.....+..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..... .-..-....+..+.+.+-.+.|.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCc-ceeeeHHHHHHHHHHhChHHHHH
Confidence 566667777777788888888765 4445567888888888888877777665521 11111345556666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
.+-.+... +......++ -..+++++|.+++..+
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 55544332 333333333 3457788888777665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.27 Score=36.33 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
...++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666677777777777766653 46666677777776543 3333344332 1122223345555555
Q ss_pred cchhhHHHHHHHHH
Q 016128 161 LSALKLGKETHGHV 174 (394)
Q Consensus 161 ~~~~~~a~~~~~~~ 174 (394)
.+-++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=96.32 E-value=1 Score=42.68 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHHh-cCC-----------chHHHHHHHHHHh-------hCCC
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACWC-HLN-----------SDLGEEMAMKLQE-------MEPE 350 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~-~g~-----------~~~a~~~~~~~~~-------~~~~ 350 (394)
....-+...|++++|..+|.-..+.+.+ ..|.++.-... ... ...|..+.+.... ..+.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 3445567889999999999999885555 55555543333 222 2233333333322 1122
Q ss_pred CCchHHHHHHH-----HhhcCCcccHHHHHHHh
Q 016128 351 NPTPFVILSNI-----YAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 351 ~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 378 (394)
+..++..|... +.+.|+|++|++.++++
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 23344444443 45789999998877765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.12 Score=46.34 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
.+.++..+-+.|..+.|+.+.++-. .-.....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555555555555433211 1123334455555554433221 244455555555555
Q ss_pred cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
.|+++-|++.+.+... +..|+-.|.-.|+.+.-.++.+.....+. ++....++...|+.++..+++.
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC----HHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554322 23344445555555444444444333211 2333334444455555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.078 Score=46.59 Aligned_cols=116 Identities=7% Similarity=0.006 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHchhcCCCCCCH-hhHHHHHHHHHh---------cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGR---------SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
..+.|..+|.+......+.|+. ..|..+..++.. ..+..+|.+..++..+ |++. ....+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888898887433556653 344444333321 2345567777777776 5555 7777777778888
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+.+.|...|+++..++|+...+|...+..+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999986553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.51 Score=38.05 Aligned_cols=220 Identities=17% Similarity=0.117 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccchhhHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKE 169 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 169 (394)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555442221 2455566666666666677666666665542 123344455555555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCchHHHHHHHHhhcCCC----ChhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 170 THGHVIRADLNKDESMATALIS-MYMKCGQPSWARRFFDQFEIKPD----DPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.+.........+. ........ .+...|+++.|...+.+.....+ ....+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 6666665443321 11122222 56666777777777766533211 112233333334556667777777776665
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 245 EKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421113455556666666666667777666666542 222 23333333333355556666666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.34 Score=35.79 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNG 92 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~ 92 (394)
....++..+.+.+.+.....+++.+.+.+ +.+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcC
Confidence 34567777777778888888888888777 467778888888888764 3344444442 223334445667777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL-GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
.++++.-++.++.. |...+..+... ++.+.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777665532 12223333333 5666666665541 14445555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.8 Score=39.74 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHhhc---cchhhHHHHHHHHHHHcCCCCCHHHHHHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQSTG---MVPSLKCVTSVLSACAD---LSALKLGKETHGHVIRADLNKDESMATAL 189 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 189 (394)
...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|.+++..+......+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776531 11122222233344445 67777777777775555556666666666
Q ss_pred HHHH
Q 016128 190 ISMY 193 (394)
Q Consensus 190 ~~~~ 193 (394)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.17 Score=42.24 Aligned_cols=155 Identities=12% Similarity=-0.006 Sum_probs=97.8
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH----HHHHHHHccCCHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV----AVLSACGHAGHVDK 269 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ 269 (394)
..|+..+|-..++++.+. |.|...++-.=.+|...|+.+.-...++++... -.||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456777777777776655 667777777777888888888888888777654 233332222 23334456788888
Q ss_pred HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C--Ch---hhHHHHHHHHHhcCCchHHHHHHH
Q 016128 270 ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P--TV---SVYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~---~~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
|++.-++..+ --+.|.....++...+...|+..++.++..+-.. . .. .-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888777764 2234555666677777778888888888776654 1 11 123333444556678888888886
Q ss_pred HHH--hhCCCCC
Q 016128 343 KLQ--EMEPENP 352 (394)
Q Consensus 343 ~~~--~~~~~~~ 352 (394)
.-+ +...++.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 433 2334444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.3 Score=41.45 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=81.4
Q ss_pred HHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 271 LQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
.++.+.+..+++.....-+.+--+..+...|+..+|.++-.+..-||-..|..-+.+++..+++++-+++.+. ..
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks---kk-- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS---KK-- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc---cC--
Confidence 3444555555565555556677777888899999999999999999999888889999999998876665432 22
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
+|.-|.-...+|.+.|+.++|.+++.+..
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 36778888999999999999999887654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.75 Score=38.66 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=13.3
Q ss_pred hhhHhHHHHHHHHHHHHhhh
Q 016128 22 ASLLYLQFGRQVHGLTLKIE 41 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~ 41 (394)
.+.|+++.|..++.+.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~ 23 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL 23 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH
Confidence 45677777777777766533
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.59 Score=37.39 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...|.....+|-...++++|...+.+... +.|...| -....++.|.-+.+++.+. .--+..|+.....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34556666677778888888888777653 2222222 1223345555555555543 11233455566667
Q ss_pred HccCCHHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 124 SQLGMRFEAFKLFEKMQST--GMVPSLK--CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~--~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
...|..+.|-..+++.-+. ++.|+.. .|..-+...-..++...|. ..+......+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------------el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------------ELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------------HHHHHhhhHhhhhHHh
Confidence 7777777766666654321 2333321 1222222222222222222 2233344455555666
Q ss_pred hHHHHHHHHhhcC-------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC---CCCCHhhHHHHHHHHHccCCHHH
Q 016128 200 SWARRFFDQFEIK-------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK---VKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 200 ~~a~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
++|-..|.+-... +.....|-..|-.+....++..|...++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6555444432110 1111224445555556667777777776643332 122445666666666 3466666
Q ss_pred HHHHH
Q 016128 270 ALQIF 274 (394)
Q Consensus 270 a~~~~ 274 (394)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2 Score=42.50 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCHhhHH----HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---h
Q 016128 248 KPNSASFV----AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---V 320 (394)
Q Consensus 248 ~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~ 320 (394)
.|+...+. +....+.....+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++..+.+. +
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 45554443 444455566777777777666542 234567788888888888888888764444 2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
-..|+.-+...+++-+|-++..+.... ....+..+++...|++|+++..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHHHHHHHH
Confidence 366777777777777777766554221 1222333444455555555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.3 Score=40.24 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CCHhhHHHHHHH
Q 016128 184 SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK--PNSASFVAVLSA 260 (394)
Q Consensus 184 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 260 (394)
.+|..-+..-.+.|+.+.+.-+|++.... ..=...|-..+.-....|+.+-|..++....+--++ |....+.+. .
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--F 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--H
Confidence 44444555555566666666666665442 111222444444444457777666666655443322 222222222 2
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHh-hHHHHHHHHHhcCcHHHHH---HHHHhCCC--CChhhHHHHHHH-----HH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQE-HFGCMVDLLGRSGRLDEAR---ELIRELPE--PTVSVYHSLLGA-----CW 329 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~~~~~~~~--~~~~~~~~l~~~-----~~ 329 (394)
+-..|+++.|..+++.+... . |+.. .-..-+....+.|..+.+. +++....+ .+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 33467899999999998874 3 4432 2222344456677777777 44444443 111122222221 23
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
-.++.+.|..++.++.+..|++...|..++......+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 36788999999999999999999999999888776653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.4 Score=40.20 Aligned_cols=122 Identities=13% Similarity=0.032 Sum_probs=82.5
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLG 326 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 326 (394)
+..+|...+..-...|+.+.+.-+|+...- .+..-...|-..++-....|+.+-|..++.+..+ |.......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345677777777788888888888887764 3333445566666666667888888888777665 33332222222
Q ss_pred -HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH
Q 016128 327 -ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 327 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 373 (394)
..-..|+...|..+++.+.+--|.....-..-+....+.|..+.+..
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 23346788888888888887667666666666777777888887773
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.3 Score=39.53 Aligned_cols=179 Identities=9% Similarity=0.079 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHH
Q 016128 145 VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMIS 224 (394)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~ 224 (394)
..|.....+++..+.....+.-++.+..+|...| -+...+..++.+|... ..+.-..+++++....-+......-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3455566667777777777777777777777665 3556666777777776 556666666665544333333333333
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCC------HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPN------SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
.+...++.+.+...|.++...- .|. ...|..+.... ..+.+....+...+....|...-...+..+-..|.
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333366777777777665542 221 12344443321 34666777777777665555555666666667777
Q ss_pred hcCcHHHHHHHHHhCCCC---ChhhHHHHHHHHH
Q 016128 299 RSGRLDEARELIRELPEP---TVSVYHSLLGACW 329 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 329 (394)
...++.+|++++..+.+. |...-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 788888888888877663 3334444554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.59 Score=35.37 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 98 MELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 98 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
.+.+..+.+.|+.|+...+..++..+.+.|++... ..+...++-+|.......+-.+.. ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555566677778888888888888888776543 444555566666555544433222 222333333333222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
= ...+..+++.+...|++-+|.++.+.... .+......++.+..+.+|...-..+++-..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHK--VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC--cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 01234455566666777777766665432 111122444555555555444444444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.098 Score=42.53 Aligned_cols=98 Identities=16% Similarity=0.248 Sum_probs=62.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHhh-----cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc--------------
Q 016128 204 RFFDQFEIKPDDPAFWNAMISGYGR-----NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA-------------- 264 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 264 (394)
..|.......++-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344444333555566666655543 244555566667777777777777777777665432
Q ss_pred --CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc
Q 016128 265 --GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302 (394)
Q Consensus 265 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (394)
.+-+-+++++++|... |+.||..+-..|+.++.+.+-
T Consensus 135 YP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 2234567778888766 888888888888888877664
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.024 Score=43.39 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=66.4
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCH-----hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQ-----EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
.-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.-....++ |... ....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4467788888888888888763 33322 2333334567778888888877777766 3322 44455567777
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
...+++|++-|+++.+.+|....+-...++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 788888888888888888876555444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.85 Score=36.91 Aligned_cols=55 Identities=24% Similarity=0.082 Sum_probs=29.1
Q ss_pred HHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGM--VPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.++++.|....++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455666666666666664321 112334444455555566666666666555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.021 Score=30.07 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+|..+..++...|++++|+..|+++++++|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5677788888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.22 Score=44.09 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC-CCCC
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PT--VS-VYHSLLGACWCHLNSDLGEEMAMKLQEME-PENP 352 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 352 (394)
..+-..+..+..+.|+.++|.+.++++.+ |. .. +...|+.++...+.+.++..++.+..+.. |.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 44445567777788999999999888864 33 22 77788889999999999998888876554 4443
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.03 Score=29.32 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.|..+..++...|++++|++.++++.++.|.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45667777888888888888888888888754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.9 Score=38.66 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC-----CCCCHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQST-GMVP---SLKCVTSVLSACADLSALKLGKETHGHVIRAD-----LNKDESM 185 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 185 (394)
+|..+.+++.+..++.+++.+-..-... |..| --....++..++...+.++++.+.|+...+.- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444554444555555444333221 2111 01222345555666666666666666654321 1123456
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcC----C-CChhh-H-----HHHHHHHhhcCChhhHHHHHHHHHH----cCCCC-
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIK----P-DDPAF-W-----NAMISGYGRNGEYESAVEIFDLMQQ----EKVKP- 249 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~-~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~- 249 (394)
+..|...|.+..++++|.-+....... . .|... | -.+..++...|....|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777666554432111 1 12211 2 2233455566666666666655433 33221
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
.......+.+.|...|+.|.|..-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334456666777777777766665543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.27 Score=40.71 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=78.5
Q ss_pred hhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 016128 40 IEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNIL-----TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPA 114 (394)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 114 (394)
.|.+.+..+...++..-.+..++++++..+-+++.+|+.. +-.+++..+. .-+.++++.++..=++-|+.||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4556666677777777777899999999999888654432 1122233332 346779999999889999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.2 Score=40.55 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=40.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
-++..+.+..+++.+..+.+...+-+...|..++..+++.+..+...+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4566777778888888888877766666888899988888877666665555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.5 Score=38.39 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEP----ENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+|..++..+.+.|.++.|...+.++....+ ..+.....-+..+...|+..+|+..++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777777777766441 2455566666777777777777777777665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.3 Score=40.43 Aligned_cols=112 Identities=10% Similarity=-0.056 Sum_probs=51.9
Q ss_pred CChhhHHHHHHHHHHcC-CCCCH--hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 230 GEYESAVEIFDLMQQEK-VKPNS--ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
.+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-++.-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566666666553332 21111 12222322222222244445555443321 12333344444444466666666
Q ss_pred HHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHH
Q 016128 307 RELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKL 344 (394)
Q Consensus 307 ~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 344 (394)
...+..|.. .+.. -.--+.+++...|+.++|...|+.+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666654 1111 2333445555566777776666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.058 Score=44.43 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|++.++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33444444444455555555555555555555555555555555555555555554444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.042 Score=31.04 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=10.4
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
..+...|...|++++|+++|++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.32 Score=40.22 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKCVTSVL 155 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~ 155 (394)
+..++..+...|+++.+...++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 444556666667777777777777766433 666777777777777777777777776654 35666555554444
Q ss_pred HH
Q 016128 156 SA 157 (394)
Q Consensus 156 ~~ 157 (394)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.9 Score=38.31 Aligned_cols=126 Identities=10% Similarity=0.025 Sum_probs=82.7
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNG 92 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~ 92 (394)
..-|..-...|++-.|-+-+...+..- +.++.........+...|+++.+...+..... .....+-..++....+.|
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 334444445677666655444444322 33333333333446678999999998876654 345667888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
++++|..+-+-|....+. ++..........-..|-++++...++++...
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999999999887666 5554444444445556788888888887654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.52 Score=38.74 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
+++.....|...|.+.+|.++.+++...+|-+...+..++..+...||--+|...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4566668899999999999999999999999999999999999999998888888877743
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.31 E-value=5.1 Score=43.05 Aligned_cols=318 Identities=9% Similarity=0.039 Sum_probs=174.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhcc----C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 51 ALVDMYLKCGCLPCAHNVFQELKG----S-RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
.+..+=.+++.+.+|...+++-.. + .....|..+...|...+++|....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344456678999999999998422 1 1223355555599999999998887764221 22222 34445677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.|++..|...|+.+.+.+ ++...+++.++......+.++...-..+........-....++.-+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999874 3346778888888777888877776555544332221223333344555677888777776
Q ss_pred HHHhhcCCCChhhHHHH--HHHHhhcC--ChhhHHHHHHHHHHcCCCC---------CHhhHHHHHHHHHccCCHHHHHH
Q 016128 206 FDQFEIKPDDPAFWNAM--ISGYGRNG--EYESAVEIFDLMQQEKVKP---------NSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 206 ~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.. . .+..+|... ...+.+.. +.-.-.+.++.+++.-+.| -...|..++....- .+.+...+
T Consensus 1541 l~---~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~ 1614 (2382)
T KOG0890|consen 1541 LS---D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-LELENSIE 1614 (2382)
T ss_pred hh---c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55 2 344455444 23332222 2212223333333221111 11233333333221 11222222
Q ss_pred HHHHchhcCCCCCCHhhHHHHH---HHHHhcCcHHHHH-HHHHhC--C---CCChh-hHHHHHHHHHhcCCchHHHHHHH
Q 016128 273 IFTMMDDDFGLKPKQEHFGCMV---DLLGRSGRLDEAR-ELIREL--P---EPTVS-VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~-~~~~~~--~---~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
.+...........+...|..-+ ..+.+...+=-|. +.+... . ..... +|-...+.....|+++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222211101111111111111 1122211111111 111111 1 12333 88888888888999999988877
Q ss_pred HHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 343 KLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
.+.+.. -+..+...+..+.+.|+...|+.++++..+...
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 777766 356788888889999999999999988775443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.51 Score=33.65 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=57.5
Q ss_pred HHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCH---HHHHHHHHHHHccCC
Q 016128 55 MYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPDP---ATWNSMISGFSQLGM 128 (394)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~~~ 128 (394)
+++..|+++.|++.|.+... +.....||.-..++--.|+.++|++-+++..+. |.+ .. .+|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 45666778888877777654 456667777777777777777777777777664 322 22 223333445666777
Q ss_pred HHHHHHHHHHHHhCC
Q 016128 129 RFEAFKLFEKMQSTG 143 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~ 143 (394)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777666555
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.1 Score=34.59 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH--HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH-----
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV--AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG----- 291 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 291 (394)
|..++.... .+.. +......++..........++. .+...+...+++++|+..++..... |....+.
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHH
Confidence 444554443 2333 5555556666543221222222 3445678889999999999988753 2222333
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 292 CMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
.|.+.....|.+++|+..++...+++-. ....-.+.+...|+.++|...|+++.+.++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3556778899999999999998876444 455566889999999999999999999874
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.2 Score=33.75 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=89.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP-ATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK-CVT 152 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~ 152 (394)
+.+...|..-++ +++.+..++|+.-|..+.+.|...=+ -............|+...|...|++.-.....|-.. -..
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 344445555444 35677889999999999887654211 122233445677889999999999987654444332 112
Q ss_pred HH--HHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 153 SV--LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 153 ~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
.| .-.+...|.++......+.+...+.+.-...-..|.-+-.+.|++.+|.+.|.++...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22 2234567788887777777665554545555667777777888888888888887664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=37.45 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC----HHHHHHHHHHchhcCCCC
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH----VDKALQIFTMMDDDFGLK 284 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~ 284 (394)
...+.++++.+.+.|+++....|..+.-...-.+. .+...++.+.+.+..++.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 34678888888888888777777665443322222 333444445554443433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.06 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.065 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+|..+...+...|++++|...|+++.++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777777888888888888888877773
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.4 Score=35.84 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHhhccchhh
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST---GMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
-..|++.+|-..++++.+. .+.|..++...=.++.-.|+...-...++++... +++..+..-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467788888888888776 3447777777778888889988888888887754 33333333344555567788999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChh-----hHHHHHHHHhhcCChhhHHHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA-----FWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
+|++.-++..+.+ +.|.-...++.+.+...|+..++.++..+-...-.... .|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888888776 44667777888888889999999998877655422111 12233344566789999999998
Q ss_pred H
Q 016128 241 L 241 (394)
Q Consensus 241 ~ 241 (394)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.071 Score=28.49 Aligned_cols=24 Identities=8% Similarity=-0.130 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKL 344 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~ 344 (394)
|..|...|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.6 Score=33.10 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHH-----HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHH--
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMI-----AGMMLNGRSEKAMELFEGLAHEGFKPDPA-TWNS-- 118 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~-- 118 (394)
..|...++ +++.+..++|+.-|..+. +.+...|-.|. ....+.|+...|...|++.-.....|-.. -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~le-ktg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLE-KTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444443 456788899999998888 55555554443 45667899999999999988764444332 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC
Q 016128 119 MISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNK 181 (394)
Q Consensus 119 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 181 (394)
-.-.+...|.++++....+-+-..+-+.....-..|.-+-.+.|++..|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 123456778888888877777665544445555677777788999999999999887654444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.56 Score=36.24 Aligned_cols=94 Identities=18% Similarity=0.040 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhccC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKGS-----RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMIS 121 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 121 (394)
..+..+...|.+.|+.+.|.+.|.++... .-...+-.+|......+++..+...+++....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778888999999999999999988752 1233466778888888888888888777665422222121111111
Q ss_pred -----HHHccCCHHHHHHHHHHHH
Q 016128 122 -----GFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 122 -----~~~~~~~~~~a~~~~~~m~ 140 (394)
.+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2334677888877776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.1 Score=33.13 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcCCCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIKPDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.+..+...|.+.|+.+.|.+.|.++.....+ ...+-.++......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445666666666666666666665543211 22245555666666666666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.8 Score=32.40 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.5
Q ss_pred HHccCCHHHHHHHHHHHH
Q 016128 123 FSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~ 140 (394)
+...|+|.+|+.+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444555555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.44 Score=31.87 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+ +..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 45567777888888888999999999999999999999999999988753 2224446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.058 Score=40.08 Aligned_cols=129 Identities=18% Similarity=0.131 Sum_probs=82.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHH
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 95 (394)
.+++.+.+.+.+....++++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 4677888889999999999999987766778999999999999988888888887433 133445667777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+|.-++.++....- .+..+...++++.|.+.+.+ .++...|..++..|...+.
T Consensus 88 ~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 77766655433210 01112233344444422211 2345677777777765544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.97 E-value=7.4 Score=38.89 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHhhccc--hhhHHHHHHHHHHH
Q 016128 145 VPSLKCVTSVLSACADLS--ALKLGKETHGHVIR 176 (394)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 176 (394)
.|+ .....+|.++.+.+ .++.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 33446677777666 56666666555554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.27 Score=41.23 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=53.1
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh---hHHHHHHHHHhcCCch
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS---VYHSLLGACWCHLNSD 335 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 335 (394)
-|.++|.+++|+..|..... ..| ++.++..-..+|.+..++..|..-.......|.. .|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666666666665542 233 5555655566666666666665555544442221 4555555555566677
Q ss_pred HHHHHHHHHHhhCCCCCc
Q 016128 336 LGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~ 353 (394)
+|.+-++.+++++|.+..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 777777777777776543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.16 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m 139 (394)
|..|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.8 Score=40.48 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=42.4
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 338 (394)
...|+++.+.+.+..... -+.....+...+++...+.|++++|...-..|.. .+..+...........|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 345566666555555432 2333444555555555566666666555555543 11112222222223345555565
Q ss_pred HHHHHHHhhCCCC
Q 016128 339 EMAMKLQEMEPEN 351 (394)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (394)
-.|+++..+.|+.
T Consensus 412 ~~wk~~~~~~~~~ 424 (831)
T PRK15180 412 HYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccCChh
Confidence 5666555555433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.4 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 335667777777788899999999999999999999999999999887533 33336766664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.15 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=17.1
Q ss_pred HHHhhhcCCchHHHHHHHHHHHhcCChhHHH
Q 016128 36 LTLKIEKQSDTMIGTALVDMYLKCGCLPCAH 66 (394)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 66 (394)
+.++.. |.+...|+.+..+|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334333 445666666666666666666654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.4 Score=35.06 Aligned_cols=32 Identities=3% Similarity=-0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+--+..--+..+++.+|+++|+++....-+|+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33333444566788888888888877554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.08 E-value=3 Score=31.65 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 016128 30 GRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF 109 (394)
Q Consensus 30 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 109 (394)
..+..+.+.+.+++|+...+..+++.+.+.|++.....++..-. -+|.......+-.+. +....+.++=-+|.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V-i~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV-IPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc-cCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 34556666778889999999999999999999888888877644 334333333332222 2223333333333332
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 016128 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 110 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
=...+..++..+...|++-+|+++.++.....-. + -..++.+..+.+|...-..+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~-~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSV-P---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC-C---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113566778888899999999888775332111 1 23344555555554444444444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.1 Score=34.67 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHH
Q 016128 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNS-----ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDL 296 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 296 (394)
.+-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.-.....+ +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 44577888899999988888876 33322 2344444566777888888777666653 2332 1222223457
Q ss_pred HHhcCcHHHHHHHHHhCCC
Q 016128 297 LGRSGRLDEARELIRELPE 315 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~ 315 (394)
|.+...+++|++-|+.+.+
T Consensus 178 yek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 7788888888888888877
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.49 Score=34.69 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=40.1
Q ss_pred hcCcHHHHHHHHHhCCC--CChh---hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 299 RSGRLDEARELIRELPE--PTVS---VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~--~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
..++++++..++..+.- |+.. ++... .+...|++++|+++++.+.+-.+..+..-..++.++.-.||.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 46777777777766653 4444 33333 355677778888777777666654444444444444444543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.49 E-value=7 Score=34.37 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=104.9
Q ss_pred cCCchHHHHHHHHhhcC--CCChhhHHHHHHH-HhhcCChhhHHHHHHHHHHc--CCCCCHhhHHHHHHHHHccCCHHHH
Q 016128 196 CGQPSWARRFFDQFEIK--PDDPAFWNAMISG-YGRNGEYESAVEIFDLMQQE--KVKPNSASFVAVLSACGHAGHVDKA 270 (394)
Q Consensus 196 ~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 270 (394)
.|+..++.+.+..+... +.....+-.|+.+ .....+...|+++|+...-. |--........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 57777777777776544 3333445555544 34456777888888776542 1111223344444555677888887
Q ss_pred HHHHHHchhcCCCCCCHhhH-HHHHHHHHhc---CcHHHHHHHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 271 LQIFTMMDDDFGLKPKQEHF-GCMVDLLGRS---GRLDEARELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
..+-.....+|...|-..-| ..+...+.+. -..+.-..++..|..+... .|-.+.+.-.-.|+.+.|.-.-+++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 77666666554444433322 2233333333 2344555556666543333 88888888888888888888888888
Q ss_pred hhCCCCCchHHHHHHHHh-----hcCCcccHHHHHHHhhhccc
Q 016128 346 EMEPENPTPFVILSNIYA-----GLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~~~ 383 (394)
.+... ...-...+..|. -..+++++.+.+..+....+
T Consensus 285 ~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 285 KLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 76632 222222222222 23456666666666554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.25 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
+++.+...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555666666655555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.26 Score=36.59 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=67.5
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++... . .-...+++.+.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhc
Confidence 3455566666777777777777765545556667777777777766666666655221 1 1223445556666
Q ss_pred CcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 301 GRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
|.+++|.-++.++...+... ..+...++++.|.+++.+ .+++..|..++..+...++
T Consensus 84 ~l~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence 66666666666654311110 012233444444422211 2335566666666555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=9.2 Score=34.59 Aligned_cols=176 Identities=9% Similarity=0.057 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
.|.....+++..+..+-++.-.+.+-.++..-+.+-..+-.++.+|... ..+.-..+|+++.+..+. |...-..|+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 4556667788888888888888888888877777788889999999988 678889999999887543 44444455555
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCC------HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CChhhHHHHHHHHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPK------QEHFGCMVDLLGRSGRLDEARELIRELPE-----PTVSVYHSLLGACW 329 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~ 329 (394)
|-+ ++.+++..+|.++..+ +-|. ...|..|...- ..+.+....+...+.. .-.+.+.-+..-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 544 8888888888888763 2221 12344444321 3566677777666654 22235555667788
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...++++|++++..+.+.+..|.-+-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 8889999999999888888767666666655544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=6.7 Score=33.02 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCCHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRS----EKAMELFEGLAHEGFKPDPATWNS 118 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ 118 (394)
.+|..+....+..+...|.. ++...+..+...+|...-...+.++.+.|+. +++...+..+... .|+..+-..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 34555555556666555543 2333333333355555555556666666652 3455555555333 334444444
Q ss_pred HHHHHHccCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016128 119 MISGFSQLGMR-----FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY 193 (394)
Q Consensus 119 l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (394)
.+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.++
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aL 183 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 44444443211 122222222222 2233444445555555544 2333443333332 2334444444444
Q ss_pred HHcC-CchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 016128 194 MKCG-QPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 194 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.+.+ +...+...+..+... ++..+-...+.++.+.|+. .++..+-+..+.+. .....+.++...|+. +|..
T Consensus 184 g~~~~~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQD-KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred hcCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHH
Confidence 4432 122333333333322 3444445555555555552 34444433333321 122344455555553 3444
Q ss_pred HHHHch
Q 016128 273 IFTMMD 278 (394)
Q Consensus 273 ~~~~~~ 278 (394)
.+..+.
T Consensus 256 ~L~~l~ 261 (280)
T PRK09687 256 VLDTLL 261 (280)
T ss_pred HHHHHH
Confidence 444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.98 E-value=22 Score=38.82 Aligned_cols=313 Identities=10% Similarity=0.005 Sum_probs=166.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHH----HhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 016128 16 SVISACASLLYLQFGRQVHGLT----LKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLN 91 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~ 91 (394)
++..+=.+.+.+..|.-.++.- .+.. -....+-.+...|+.-+++|...-+...-...|+. +. -|--....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~-qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQ-QILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--HH-HHHHHHhh
Confidence 3444555678888888888873 2211 12334445555899999999888888752224443 22 34445668
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHhhccchhhHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS-VLSACADLSALKLGKET 170 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 170 (394)
|++..|..-|+.+.+.+.. ...+++-++......|.++.++-..+-.... ..+....++. -+.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999999987422 4778888888888888888887766555543 2333333333 34444667777776666
Q ss_pred HHHHHHcCCCCCHHHHHH--HHHHHHHcCCch-----HHHHHHHHhhcC--------CCChhhHHHHHHHHhhcCChhhH
Q 016128 171 HGHVIRADLNKDESMATA--LISMYMKCGQPS-----WARRFFDQFEIK--------PDDPAFWNAMISGYGRNGEYESA 235 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~-----~a~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 235 (394)
.. .. +..+|.. ++....+..+-+ +..+..++.... +.-...|..++..+.-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 54 11 1122221 222222222111 111111111110 10012244444443322111111
Q ss_pred HHHHHHHHHcCCCCCHhh------HHHHHHHHHccCCHHHHHHHHHHc-hh---cCCC-CCCHhhHHHHHHHHHhcCcHH
Q 016128 236 VEIFDLMQQEKVKPNSAS------FVAVLSACGHAGHVDKALQIFTMM-DD---DFGL-KPKQEHFGCMVDLLGRSGRLD 304 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~-~~---~~~~-~~~~~~~~~l~~~~~~~g~~~ 304 (394)
. ... +..++..+ |..-+..-....+..+-+--+++. .. +.+. ..-..+|-...+...+.|+++
T Consensus 1614 ~----~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1614 E----ELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred H----Hhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 1 111 11222211 111111111111111111111111 11 0011 122457778888888899999
Q ss_pred HHHHHHHhCCCCChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 305 EARELIRELPEPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 305 ~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
.|...+-...+.... .+-..+.-+...|+...|+.++++..+..
T Consensus 1688 ~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998877776664444 78888888999999999999999998754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.32 Score=24.95 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=14.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555553
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.15 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=15.8
Q ss_pred hHHHHHHHHhhcCCcccHHHHHH
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
....++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.74 E-value=4.1 Score=30.07 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 016128 88 MMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~ 107 (394)
++..|++++|.++|++..+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34455555555555555444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.61 E-value=12 Score=35.17 Aligned_cols=275 Identities=11% Similarity=0.057 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHH----H-HHccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHhhcc
Q 016128 94 SEKAMELFEGLAHEGFKPDPATWNSMIS----G-FSQLGMRFEAFKLFEKMQS-------TGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 94 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~----~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~ 161 (394)
...|.+.++...+.|. ......+.. + +...++.+.|+.+|+...+ .|. ......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcC
Confidence 4678888888877753 222222222 2 4466789999999998876 442 23455566666553
Q ss_pred c-----hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHhhcCCCChhhHHHHHHHH---hhcCCh
Q 016128 162 S-----ALKLGKETHGHVIRADLNKDESMATALISMYMK-CGQPSWARRFFDQFEIKPDDPAFWNAMISGY---GRNGEY 232 (394)
Q Consensus 162 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 232 (394)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|......+.....+..-+.-. ....+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 2 66779999999888874 444443333222222 2356789999988877654444433322211 134578
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH---Hh----cCcHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL---GR----SGRLDE 305 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~ 305 (394)
..|..++++..+.| .|...--...+..+.. ++++.+...+..+... +.+.....-..++... .. ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhH
Confidence 88999999998887 3332222233333444 6666666665555443 3322211111111111 11 224555
Q ss_pred HHHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC---CcccHHHHHHH
Q 016128 306 ARELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG---RWEDVGRIRQM 377 (394)
Q Consensus 306 a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~ 377 (394)
+...+.+....... ....+...|.. ..+++.|...+..+.... ......++..+..-- .+..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 66666655543333 55555554433 235778888888777666 566666666665432 14567777776
Q ss_pred hhhc
Q 016128 378 INDR 381 (394)
Q Consensus 378 m~~~ 381 (394)
....
T Consensus 535 ~~~~ 538 (552)
T KOG1550|consen 535 ASEE 538 (552)
T ss_pred HHhc
Confidence 6553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.60 E-value=4.6 Score=30.33 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHcCCchHHHHHHHHhhcC
Q 016128 193 YMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~ 212 (394)
+...|++.+|..+|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 44555555555555555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.48 E-value=14 Score=35.81 Aligned_cols=216 Identities=12% Similarity=0.024 Sum_probs=109.4
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCH----H---HHHHH-HHHHHHcCCchHHHHHHHHhhcC-C-----CChhhHHHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDE----S---MATAL-ISMYMKCGQPSWARRFFDQFEIK-P-----DDPAFWNAMIS 224 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l-~~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~~~l~~ 224 (394)
....++.+|..++.++...-..|+. . .++.| .......|++++|.++.+..... + .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4556777777777776543222211 1 12221 12233467888888887775443 2 23334666777
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHhh---HHHHH--HHHHccCC--HHHHHHHHHHchhcCCC--C---CCHhhHHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNSAS---FVAVL--SACGHAGH--VDKALQIFTMMDDDFGL--K---PKQEHFGC 292 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~--~---~~~~~~~~ 292 (394)
+..-.|++++|..+.++..+..-.-+... +..+. ..+...|+ .++.+..+......... + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77888999999888877655422223322 22222 22445553 23333333333221111 1 11223344
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC------CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-Cch-HHHH--
Q 016128 293 MVDLLGRSGRLDEARELIRELPE------PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-PTP-FVIL-- 358 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~------~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-~~~l-- 358 (394)
+..++.+ .+.+..-.....+ |... .+..|+......|+.++|...+.++......+ +.+ |...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 4443333332222 2222 33366777788899999999888888755222 222 2211
Q ss_pred -H--HHHhhcCCcccHHHHHHH
Q 016128 359 -S--NIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 359 -~--~~~~~~g~~~~a~~~~~~ 377 (394)
+ ......|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1 123355777766665544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.30 E-value=7.7 Score=32.32 Aligned_cols=64 Identities=5% Similarity=-0.050 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 109 FKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST-GMVPSLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 109 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
-.++..+...++..++..++|.+-.++++..... +..-|...|...|+.....|+..-...+..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555666666666666666655555433 334455556666666666666554444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.36 Score=40.59 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=70.0
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc
Q 016128 294 VDLLGRSGRLDEARELIRELPE--P-TVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED 370 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (394)
...|.+.|.+++|+..|..... | +.+++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3568899999999999998877 6 556888888899999999999988888888887666777777777777777777
Q ss_pred HHHHHHHhhh
Q 016128 371 VGRIRQMIND 380 (394)
Q Consensus 371 a~~~~~~m~~ 380 (394)
|.+-.+....
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 7766666554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.16 Score=42.57 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=42.6
Q ss_pred cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHH
Q 016128 300 SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQ 376 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 376 (394)
.|.++.|++.|...++ |+.. .|..-..++.+.++...|++-+..+.+++|+...-|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 3445555555554444 2222 444444455555555555555555555555555555555555555555555555555
Q ss_pred Hhhhccc
Q 016128 377 MINDRQL 383 (394)
Q Consensus 377 ~m~~~~~ 383 (394)
...+.++
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 5554444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.07 E-value=2.9 Score=35.04 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-----ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh
Q 016128 178 DLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-----DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA 252 (394)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (394)
|......+...++..-....+++.++..+-++...+. +... .+.++. +-.-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 3334444445555555556677777777776665421 1111 122222 23345678888888888888899999
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
+++.+++.+.+.+++..|..+...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999988888887776654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.68 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=12.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555554443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.21 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=24.8
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+..++.++.+.|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.72 E-value=2.7 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQ 140 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 140 (394)
++.+-++.+....+.|++....+.+++|.+.+++.-|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555555566666666666666666666666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.59 E-value=3.8 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=15.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhh
Q 016128 174 VIRADLNKDESMATALISMYMKCGQPSWARRFFDQFE 210 (394)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 210 (394)
+...++.|++.+..+.+.++.+.+++..|.++|+.+.
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.83 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 114 ATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776643
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.5 Score=32.26 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC--CCCCCHhhHHHHHHHHHhcCcHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF--GLKPKQEHFGCMVDLLGRSGRLDEAR 307 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (394)
+.|.+.|-++...+..-++.....|...|. ..+.+++..++....+-. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666665545555555555554 467777777776665432 22566777777777777777777664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.05 E-value=4.1 Score=31.88 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCc
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA---DLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
+.+.|+ +.|.+.|-++...+..-++.....+...|. ..+.+++..++-...+. +-.+|+.++.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344443 557777777776665545555555555444 56777777777776543 2356788888888888888888
Q ss_pred hHHH
Q 016128 200 SWAR 203 (394)
Q Consensus 200 ~~a~ 203 (394)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.88 Score=36.32 Aligned_cols=83 Identities=11% Similarity=0.012 Sum_probs=44.5
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhh-HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEH-FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDL 336 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 336 (394)
|....+++.|+..+.+.. .+.|+..+ |..=+..+.+..+++.+..--.+..+ |+.+ ..-.+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555544 33455433 33444455556666655555444444 5555 44445555556666666
Q ss_pred HHHHHHHHHh
Q 016128 337 GEEMAMKLQE 346 (394)
Q Consensus 337 a~~~~~~~~~ 346 (394)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666644
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=4.4 Score=36.21 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=35.6
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC 64 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 64 (394)
-...+.++...+++..+...|.......+|.-+..|.+.|....
T Consensus 27 ~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 27 QFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred ccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh
Confidence 34567899999999999999977777788888888888886543
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.77 E-value=13 Score=32.53 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCC
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG-----SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE---------GFKPD 112 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------g~~p~ 112 (394)
..+..+...|..+|+++.|++.+.+.+. +..+..|-.+|..-+-.|+|........+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4667788888889999999999888664 123345666677777778887777776666543 12223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-C-----CCCCHHHHHHHHHHhhccchhhHHHHHHHHHH-HcCCCCCHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQST-G-----MVPSLKCVTSVLSACADLSALKLGKETHGHVI-RADLNKDESM 185 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 185 (394)
...+..+.....+ ++..|.+.|-..... . +.|...+....+.+++--++-+.-..+..... +.-....+..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 3344444443333 566665555333211 0 23333333333444433333222222111110 0001223444
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
...+...| .+++..+.++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 44444444 3567777777777665
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.74 E-value=3.6 Score=31.46 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=32.4
Q ss_pred CChh-hHHHHHHHHHhcC-----------CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 316 PTVS-VYHSLLGACWCHL-----------NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
|+.. ++..+..++...+ .+++|...|+++.+.+|.| ..|..-+.... +|-++..++.+++
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 5555 6666665554432 2466667777777778866 45555545443 3555555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.68 E-value=2.2 Score=33.67 Aligned_cols=57 Identities=16% Similarity=-0.051 Sum_probs=30.8
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHh
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQEL 72 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 72 (394)
+.-++.+.+.+.+.+++.....-++.. |.|...-..+++.++-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334445555555666665555544443 445555555666666666666665554443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.52 Score=27.78 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
.+.-++.+.|++++|.+..+.+.+++|.|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3556788999999999999999999998865543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.23 E-value=18 Score=33.49 Aligned_cols=131 Identities=12% Similarity=0.020 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
-+.+.+.+.+.|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++..+.++
T Consensus 617 rt~va~Fle~~g~~e~AL~~s------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 344555555555555554431 11111 1223345566666665544322 44556666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 129 RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
+..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 6666666555432 334444444555555444444444444421 2222344455666666665544
Q ss_pred h
Q 016128 209 F 209 (394)
Q Consensus 209 ~ 209 (394)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=13 Score=31.41 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHhCCCCCCHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR----FEAFKLFEKMQSTGMVPSLKC 150 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~ 150 (394)
.+|.......+..+...|.. ++...+..+... +|...-...+.++...|+. .++...+..+... .|+...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 55555555556666555542 233333333322 2444444555555555542 3455555555322 334444
Q ss_pred HHHHHHHhhc
Q 016128 151 VTSVLSACAD 160 (394)
Q Consensus 151 ~~~l~~~~~~ 160 (394)
-...+.++..
T Consensus 108 R~~A~~aLG~ 117 (280)
T PRK09687 108 RASAINATGH 117 (280)
T ss_pred HHHHHHHHhc
Confidence 4444444443
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.82 E-value=3.1 Score=29.53 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
-+..+.++.+...++.|++......+++|.+.+++..|..+|+-++. ++.+....|..++.
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 35666777777888899999999999999999999999999999876 44444445655553
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.52 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 356 VILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 356 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788888888888888888887654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.77 E-value=13 Score=31.07 Aligned_cols=150 Identities=10% Similarity=0.004 Sum_probs=95.3
Q ss_pred CCCCChHHHHHHHHHhhh----------------hHhHHHHHHHHHHHHh-hhcCCchHHHHHHHHHHHh-cCC----hh
Q 016128 6 SDEPNSVTFISVISACAS----------------LLYLQFGRQVHGLTLK-IEKQSDTMIGTALVDMYLK-CGC----LP 63 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~----~~ 63 (394)
|.+++..-+-.+++.+.. +..+.+|+.+|+..-. ..+-.|..+...+++.... .+. +-
T Consensus 107 g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alY 186 (292)
T PF13929_consen 107 GCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALY 186 (292)
T ss_pred CCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHH
Confidence 666666666666665332 2234445555552221 2244567777778877776 222 11
Q ss_pred HHHHHHHH-hccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH---
Q 016128 64 CAHNVFQE-LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPDPATWNSMISGFSQLGMRFEAFKLFEK--- 138 (394)
Q Consensus 64 ~A~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 138 (394)
+.+..+-. ....++..+...++..++..+++.+-.++++..... +..-|...|..+++.....|+..-..++.++
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhL 266 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHL 266 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCe
Confidence 22222211 112467778888999999999999999999988776 6677999999999999999998877666554
Q ss_pred --HHhCCCCCCHHHHHHHH
Q 016128 139 --MQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 139 --m~~~~~~~~~~~~~~l~ 155 (394)
+.+.++..+...-..+-
T Consensus 267 LwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 267 LWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred EEeeecCCcCCHHHHHHHH
Confidence 23445555555444443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.95 Score=22.40 Aligned_cols=29 Identities=24% Similarity=0.083 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
|..+...+...|+++.|...++...+..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555566666666666666655544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.43 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.6
Q ss_pred hHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998864
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.27 E-value=19 Score=32.52 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=65.1
Q ss_pred CCHh-hHHHHHHHHHhcCcHHHHHHHHHhCCC---CChhhHHHHHHHHH--hcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 285 PKQE-HFGCMVDLLGRSGRLDEARELIRELPE---PTVSVYHSLLGACW--CHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 285 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
|+.. .-+.+++.+.+.|-..+|..++..+.. |....|..+++.-. ...+...+..+|+.+......++..|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4433 345677777888888888888887776 23336777765432 22346677788887777554777888887
Q ss_pred HHHHhhcCCcccHHHHHHHhhh
Q 016128 359 SNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...-...|..+.+-.++-++.+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhhccCCCcccccHHHHHHHH
Confidence 7777788888887777665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.10 E-value=23 Score=33.29 Aligned_cols=147 Identities=13% Similarity=-0.039 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHH-----HHhcCChhHHHHHHHHhcc-------CCChhHHHHHHHHHHhcC--
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDM-----YLKCGCLPCAHNVFQELKG-------SRNILTWNTMIAGMMLNG-- 92 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~ll~~~~~~~-- 92 (394)
...+.++++...+.| +......+..+ +....+.+.|...|+.... ........-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345666666666655 22222222221 2344577777777766542 223334444555555432
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--hccchhhH
Q 016128 93 ---RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ-LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC--ADLSALKL 166 (394)
Q Consensus 93 ---~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 166 (394)
+.+.|..++...-..|.+ +....-..+..... ..+...|.++|...-..|..+ ..-+..++-.. ....+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHH
Confidence 455566666666665432 33332222222222 234566666666666665332 11111111111 12235566
Q ss_pred HHHHHHHHHHcC
Q 016128 167 GKETHGHVIRAD 178 (394)
Q Consensus 167 a~~~~~~~~~~~ 178 (394)
|..++.+..+.|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 666666666665
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.10 E-value=27 Score=34.05 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=112.2
Q ss_pred HHHHcCCchHHHHHHHHhhcC--CCCh-------hhHHHHHH-HHhhcCChhhHHHHHHHHHHcC----CCCCHhhHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK--PDDP-------AFWNAMIS-GYGRNGEYESAVEIFDLMQQEK----VKPNSASFVAV 257 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~--~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 257 (394)
......++.+|..+..++... +++. ..|+.+-. .....|+++.|.++-+.....= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344568899999998886544 1111 12444433 3446789999999988776541 23344556677
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhH---HHH--HHHHHhcCcHH--HHHHHHHhCCC------CC----hhh
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHF---GCM--VDLLGRSGRLD--EARELIRELPE------PT----VSV 320 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~~--~a~~~~~~~~~------~~----~~~ 320 (394)
..+..-.|++++|..+.+...+. .-.-+...+ ..+ ...+...|... +....|..... |- ..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77777889999999888766542 112233222 222 23455667333 33333333322 11 114
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhC----CCCCch---HHHHHHHHhhcCCcccHHHHHHHhhhccccccCCCCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEME----PENPTP---FVILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISA 391 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 391 (394)
+..+..++.+ .+.+..-.....+.+ |..... +..|+......|+.++|...++++......+.+...|
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 4444444444 444444444443322 322222 2357788889999999999999998866555544444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.77 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.7
Q ss_pred chHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 353 TPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36788999999999999999999998764
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.87 E-value=11 Score=29.34 Aligned_cols=57 Identities=7% Similarity=-0.014 Sum_probs=27.0
Q ss_pred HHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
.......|++++|...++......-.......-.+.+...|+-++|..-|++..+.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344445555555555555544421122222333344555555555555555555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.50 E-value=13 Score=29.61 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADL-NKDESMATALIS 191 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 191 (394)
+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|+++.|.+-+...-..+. .|-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5567777777777888888888888777654322222222222 23345677777665555544432 222222222221
Q ss_pred HHHHcCCchHHHHHH-HHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC------CCHhhHHHHHHHHHcc
Q 016128 192 MYMKCGQPSWARRFF-DQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK------PNSASFVAVLSACGHA 264 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~ 264 (394)
..-++.+|..-+ ++... .+...|...+..|-- |+.. ...+++++....-. .-..||--+...+...
T Consensus 178 ---~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 223455554433 33333 344444433333221 1111 12233333221110 1135777888888888
Q ss_pred CCHHHHHHHHHHchhc
Q 016128 265 GHVDKALQIFTMMDDD 280 (394)
Q Consensus 265 ~~~~~a~~~~~~~~~~ 280 (394)
|+.++|..+|+-....
T Consensus 251 G~~~~A~~LfKLaian 266 (297)
T COG4785 251 GDLDEATALFKLAVAN 266 (297)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888877654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.28 E-value=10 Score=35.07 Aligned_cols=131 Identities=16% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNG 92 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~ 92 (394)
.-+.+..-+.++|-.++|+++ .+|+. .-.....+.|+++.|.++..+.. +..-|..|.++..+.+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d---~rFelal~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPD---QRFELALKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChh---hhhhhhhhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcc
Confidence 344555555566655555544 22322 11234456788888877766643 5566888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |... .++...|+++++.+++.
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF-----~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAF-----LAYFLSGDYEECLELLI 745 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chHH-----HHHHHcCCHHHHHHHHH
Confidence 88888887765443 455666666777766655555555555532 3222 23445677777776655
Q ss_pred H
Q 016128 173 H 173 (394)
Q Consensus 173 ~ 173 (394)
.
T Consensus 746 ~ 746 (794)
T KOG0276|consen 746 S 746 (794)
T ss_pred h
Confidence 4
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.21 E-value=3 Score=33.59 Aligned_cols=98 Identities=15% Similarity=0.037 Sum_probs=46.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcC-----CCCCCHh-----------hHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDF-----GLKPKQE-----------HFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
+...-.+-+.+.|++.+|..-|++..... .-+|... .+..+..++...|++-++++.-.++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 33344445566677777777666543210 1112111 112222334444555555555555443
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
|+.+ .|-.-..+.+..=+..+|.+-|.++++++|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3333 4444444544444555555555555555553
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.8 Score=34.87 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.+-.+|.+.++++.|+++.+.+..+.|+++.-+.--+..|.+.|.+..|..-++...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444433
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.16 E-value=37 Score=33.59 Aligned_cols=339 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHH----HHhcCChhHHHHHHHHhccCCChhHHHHHHHHHH
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDM----YLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMM 89 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~ 89 (394)
+..=+..+.+..++++|..+-+.....+......+-..-+.- +...|++++|.+.|.++...| ..++..|-
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~-----~~vi~lfP 384 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDP-----RHVISLFP 384 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCh-----HHHHHhch
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHH----------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 90 LNGRSEKAMELFEGLAHEGFKPDPATWN----------SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~----------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
+-.-+-.......|..|+..... .++.-+....+-..+.-=...|... ...-+.......
T Consensus 385 -----~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~-----~~~~~~~~s~~~ 454 (877)
T KOG2063|consen 385 -----DLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYM-----NYFKNTLISELL 454 (877)
T ss_pred -----hhcCCcccccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHH-----hhhhccCcchhh
Q ss_pred ccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 160 DLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
....-+-+..+=..+.+.-...++.....++..-...-..++...++.+... |..|+..|...|+.++|+++|
T Consensus 455 ~~~~~~~~~~IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-------y~~Li~LY~~kg~h~~AL~ll 527 (877)
T KOG2063|consen 455 KSDLNDILELIDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-------YRELIELYATKGMHEKALQLL 527 (877)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-------HHHHHHHHHhccchHHHHHHH
Q ss_pred HHHHH---cCCCCCHhhHHHHHHHHHccCCH--HHHHHHHHHchhcCCCCCCHhhHHH------------HHHHHHhcCc
Q 016128 240 DLMQQ---EKVKPNSASFVAVLSACGHAGHV--DKALQIFTMMDDDFGLKPKQEHFGC------------MVDLLGRSGR 302 (394)
Q Consensus 240 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~ 302 (394)
.+... ..-.--...+..++..+.+.+.. +-..++-+..... .......++.. -+-.|.....
T Consensus 528 ~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~ 606 (877)
T KOG2063|consen 528 RDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKE 606 (877)
T ss_pred HHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-CchhheeeeeccChhhhccCCHHHHHHHhhhhC
Q ss_pred HHHHHHHHHhCCC----CChhhHHHHHHHHHhcCC-----------------chHHHHHHHHHHhhCC-------CCCch
Q 016128 303 LDEARELIRELPE----PTVSVYHSLLGACWCHLN-----------------SDLGEEMAMKLQEMEP-------ENPTP 354 (394)
Q Consensus 303 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~~~~-------~~~~~ 354 (394)
.+-+..+++.+.. ++....+.++..|...=+ .+.....++.-....| +....
T Consensus 607 ~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l 686 (877)
T KOG2063|consen 607 PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDEL 686 (877)
T ss_pred cchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhH
Q ss_pred HHHHHHHHhhcCCcccHHHHH
Q 016128 355 FVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~ 375 (394)
|...+-.+.+.|+-++|+.++
T Consensus 687 ~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 687 YEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred HHHHHHHHhhhhhHHHHHHHH
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.03 E-value=11 Score=28.95 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHH---HhcCChhHHHHHHHHhcc--------CCC-hhHHHHHHHHHHhcC--
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMY---LKCGCLPCAHNVFQELKG--------SRN-ILTWNTMIAGMMLNG-- 92 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~ll~~~~~~~-- 92 (394)
++.|++.++.-...+ |.|...++.-..++ ++.....++.++++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 556666666655555 55666555443333 333444445555444322 333 345555555544322
Q ss_pred --C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 93 --R-------SEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 93 --~-------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
+ +++|.+.|+..... .|+..+|+.-+.... +|-.+..++.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 34444444444443 566666666665543 244455555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.87 E-value=2.3 Score=23.89 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=10.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
..+|...|+.+.|..++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.83 E-value=37 Score=33.20 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=80.6
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH
Q 016128 53 VDMYLKCGCLPCAHNVFQELKGSRNI--LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF 130 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 130 (394)
=+.|...|+++.|+++-+.- |+. ..+..-...|.+.+++..|.+++.++.+ .|..+.--+....+.+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~---p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR---PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHhcchHHHHHHhccCC---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHH
Confidence 34566778888887765542 222 2233445667777888888888877633 2334444444444444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH-----HHh-hccchhh----HHHHHHHH--------HHH-cCCCCCHHHHHHHHH
Q 016128 131 EAFKLFEKMQSTGMVPSLKCVTSVL-----SAC-ADLSALK----LGKETHGH--------VIR-ADLNKDESMATALIS 191 (394)
Q Consensus 131 ~a~~~~~~m~~~~~~~~~~~~~~l~-----~~~-~~~~~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~l~~ 191 (394)
+++.|-.=+-..++|...+-..++ ..+ .+.++++ ++.+-++. +.. .....+...+.+...
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 444332211112334333322222 221 1122211 22211111 110 001112222233334
Q ss_pred HHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
.....|+.+....+-.-+.. |..++.-+.+.+.+++|++++..
T Consensus 513 l~~~~~~~e~ll~fA~l~~d-------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLIKD-------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666655544444 56677777777777777776654
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.41 E-value=12 Score=31.02 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=5.9
Q ss_pred HHHHccCCHHHHHH
Q 016128 121 SGFSQLGMRFEAFK 134 (394)
Q Consensus 121 ~~~~~~~~~~~a~~ 134 (394)
.+++..++|.+++.
T Consensus 91 QALAEmnrWreVLs 104 (309)
T PF07163_consen 91 QALAEMNRWREVLS 104 (309)
T ss_pred HHHHHHhhHHHHHH
Confidence 33444444444443
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.35 E-value=25 Score=30.91 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=33.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCC-CCchHHHHHHHHh-hcCCcccHHHHHHHhh
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPE-NPTPFVILSNIYA-GLGRWEDVGRIRQMIN 379 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 379 (394)
.+..+.+.|.+..|.++.+-+..++|. ||-.....++.|+ +.++++--+++.+...
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 345556666666666666666666665 6655555555554 5566655555555443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.09 E-value=24 Score=30.46 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh---cCcHHHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR---SGRLDEAREL 309 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 309 (394)
+.-+.++++..+.+. .+......++..+.+..+.++..+-|+.+... .+-+...|...+..... .-.++....+
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 445566666666532 34455556666666666666666677776653 22245555555544332 1223344333
Q ss_pred HHhCC-------CC------Ch-----h---hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 310 IRELP-------EP------TV-----S---VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 310 ~~~~~-------~~------~~-----~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
|.+.. .. +. . ++..+...+...|-.+.|+.+++-+.+.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33332 11 01 1 33334445567899999999999988866
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.94 E-value=21 Score=29.51 Aligned_cols=277 Identities=11% Similarity=0.081 Sum_probs=161.6
Q ss_pred CCCCChHHHHHHHHHhh-hhHhHHHHHHHHHHHHhhhcCCch---HHHHHHHHHHHhcCChhHHHHHHHHhcc-------
Q 016128 6 SDEPNSVTFISVISACA-SLLYLQFGRQVHGLTLKIEKQSDT---MIGTALVDMYLKCGCLPCAHNVFQELKG------- 74 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 74 (394)
+-+||+..=|.--..-+ +..++++|+.-|...++.....-. .....++..+.+.|++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 45566655444333322 344788999999988875433222 3445678889999999999988888753
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC---
Q 016128 75 -SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE--GFKPDPA----TWNSMISGFSQLGMRFEAFKLFEKMQSTGM--- 144 (394)
Q Consensus 75 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--- 144 (394)
.-+..+.|++++....+.+.+....+++.-... .-+ +.. |-..|...|...|++.+..+++.++..+--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 234566788888777777766665555543321 001 211 224577788888888888888888864311
Q ss_pred -CC-------CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC-CCCCHHHHHHHH----HHHHHcCCchHHHH-HHHHhh
Q 016128 145 -VP-------SLKCVTSVLSACADLSALKLGKETHGHVIRAD-LNKDESMATALI----SMYMKCGQPSWARR-FFDQFE 210 (394)
Q Consensus 145 -~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~a~~-~~~~~~ 210 (394)
.. -...|..=|..|....+-.....++++..... .-|.+.....+- ....+.|++++|.. +|+...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11 12467777888888887777788888764322 234554444322 23445677877753 444443
Q ss_pred cC-----CCChhh--HHHHHHHHhhcCChhhHHHHHHH--HHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 211 IK-----PDDPAF--WNAMISGYGRNGEYESAVEIFDL--MQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 211 ~~-----~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.- |+.... |-.|.+.+.+.|- .-|+. .....-.|.....+.++.+|.. ++..+-++++..-..
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-- 331 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-- 331 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc--
Confidence 22 222222 4444444444431 00111 1111123455667788888854 677777777766544
Q ss_pred CCCCCHhhHH
Q 016128 282 GLKPKQEHFG 291 (394)
Q Consensus 282 ~~~~~~~~~~ 291 (394)
.+..|+....
T Consensus 332 ~IM~DpFIRe 341 (440)
T KOG1464|consen 332 NIMDDPFIRE 341 (440)
T ss_pred cccccHHHHH
Confidence 5666665544
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.59 E-value=22 Score=29.62 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-------HHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCHHHHH
Q 016128 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATW-------NSMISGFSQLGMRFEAFKLFEKMQ----STGMVPSLKCVT 152 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~ 152 (394)
+.+-.++.+++++|+..+.+....|+..|..+. ..+...|...|+....-++..... +-.-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344455666777777777777766665544333 345566666666554443333221 111111223344
Q ss_pred HHHHHhhcc-chhhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 016128 153 SVLSACADL-SALKLGKETHGHVIRADLNK-----DESMATALISMYMKCGQPSWARRFFDQ 208 (394)
Q Consensus 153 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 208 (394)
+++.-+... ..++....+....++....- ....-..++..+.+.|++.+|..+...
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444322 23333333333333221111 111223466677777887777766544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.50 E-value=3 Score=32.96 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+.+.-++.+.+.+...+++...++-.+ |... .-..+++.++-.|++++|..-++-+-++.|...
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345556778888899999888776654 6666 777888999999999999998888888887553
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.86 E-value=14 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=61.4
Q ss_pred HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC--hhhHHHHHHHHhh--
Q 016128 153 SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDD--PAFWNAMISGYGR-- 228 (394)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l~~~~~~-- 228 (394)
.=|++++..++|.++....-+-.+..-+..+.+...-|-.|.+.|.+..+.++-......|.| ..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347888888999988876655544433445566666677789999998888888776665433 3337777766554
Q ss_pred ---cCChhhHHHHH
Q 016128 229 ---NGEYESAVEIF 239 (394)
Q Consensus 229 ---~~~~~~a~~~~ 239 (394)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 68899998877
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.62 E-value=12 Score=25.59 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 143 (394)
.+...|++++|..+.+.+ ..||...|-.|.. .+.|-.+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555554443 2455555544332 24444444444444554444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.45 E-value=2.6 Score=28.24 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=31.3
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHHHHhhcCCcc
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 369 (394)
|++. .--.+...+...|+++.|++.+-.+++.++. +...-..++..+.-.|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5554 6666667777777777777777777776543 3455566666666655543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.19 E-value=23 Score=28.66 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=12.2
Q ss_pred HHhcCChhHHHHHHHHhc
Q 016128 56 YLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~ 73 (394)
+.-.+++++|-++|.+..
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 444567888888877654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=45 Score=32.08 Aligned_cols=173 Identities=12% Similarity=-0.003 Sum_probs=81.8
Q ss_pred chHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 199 PSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..+|...++.......+......-+......++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555443332333333444444445566666666665553321 1122223334455445566666666665543
Q ss_pred hcC-----------CCC--------CCHh------hHHHHHHHHHhcCcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcC
Q 016128 279 DDF-----------GLK--------PKQE------HFGCMVDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGACWCHL 332 (394)
Q Consensus 279 ~~~-----------~~~--------~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g 332 (394)
... |.+ |... ---.-+..+...|+...|...+..+.. .+......+.....+.|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 211 111 0000 001123455666777777777666554 33334455555555677
Q ss_pred CchHHHHHHHHHHhhC---CCCCchHHHHHHHHhhcCCcccHH
Q 016128 333 NSDLGEEMAMKLQEME---PENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
.++.++.........+ -.-|..|...+..+.+.-.++.++
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 7777766655433311 122334555555555544555544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.78 E-value=6.4 Score=32.78 Aligned_cols=68 Identities=13% Similarity=0.000 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (394)
.+.+-.+|.+.++++.|+.+.+.+.. |+.. -+.--.-.|.+.|.+..|..-++..++.-|.+|.+-..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34455678888999999999888876 7766 56666677888999999999999999888887765433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.75 E-value=13 Score=25.41 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
..++|..+-+.+... +-. ...+--.-+..+...|++++|..+.+....||...|-.|.. .+.|-......-+.++.
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356677776666543 211 22222223456778899999999888888788888877653 35566565555555554
Q ss_pred hhC
Q 016128 346 EME 348 (394)
Q Consensus 346 ~~~ 348 (394)
..+
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.72 E-value=27 Score=29.16 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=111.1
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHH-------HHHHHHHHhcCChhHHHHHHHHhcc-------CCChhHH
Q 016128 16 SVISACASLLYLQFGRQVHGLTLKIEKQSDTMIG-------TALVDMYLKCGCLPCAHNVFQELKG-------SRNILTW 81 (394)
Q Consensus 16 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~ 81 (394)
-+.+...+.+++++|...+..++..|...+..+. .-+...|.+.|+...-.++.....+ +..+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 4556677889999999999999999877665544 4577888888887766665544332 3445556
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCHHHH
Q 016128 82 NTMIAGMMLN-GRSEKAMELFEGLAHEGFKPDPAT-----WNSMISGFSQLGMRFEAFKLFEKM----QSTGMVPSLKCV 151 (394)
Q Consensus 82 ~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~-----~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~ 151 (394)
.+|+.-+-.. ..++..+.+.....+...+-.... =..++..+.+.|.+.+|+.+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 6666665543 456666666666554322212111 134677888999999998876544 444445554443
Q ss_pred HHH-HHHhhccchhhHHHHHHHHHHH----cCCCCCHHHHHHHHHHH--HHcCCchHHHHHHHHh
Q 016128 152 TSV-LSACADLSALKLGKETHGHVIR----ADLNKDESMATALISMY--MKCGQPSWARRFFDQF 209 (394)
Q Consensus 152 ~~l-~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 209 (394)
..+ -.+|....+..++..-+..... .-.+|....---|+++- |...++..|..+|-+.
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 322 2344444444444443333321 11233333323333332 3334566666666543
|
|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.38 E-value=51 Score=32.16 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHH-HHHHhc---C-CchHHHHHH---HHHHhhCCCCC-----chH
Q 016128 291 GCMVDLLGRSGRLDEARELIRELPEPTVS--VYHSLL-GACWCH---L-NSDLGEEMA---MKLQEMEPENP-----TPF 355 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~-~~~~~~---g-~~~~a~~~~---~~~~~~~~~~~-----~~~ 355 (394)
....+-+-..|++++|..++....++|.+ +.|.++ .+.... + +.++-..+. ..+....|..+ .++
T Consensus 626 ~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~ 705 (835)
T KOG2168|consen 626 LEVASEADEDGLFEDAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTL 705 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHH
Confidence 34445566789999999999998887776 555554 232221 1 222222222 23333333322 234
Q ss_pred HHHHHH-----HhhcCCcccHHHHHHHhh
Q 016128 356 VILSNI-----YAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 356 ~~l~~~-----~~~~g~~~~a~~~~~~m~ 379 (394)
..|... ....|+|++|+++++...
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444433 335688888888887664
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.25 E-value=5.6 Score=25.66 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=7.2
Q ss_pred HHHHHHHHhcCcHHHHH
Q 016128 291 GCMVDLLGRSGRLDEAR 307 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~ 307 (394)
..++.+|...|++.+++
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.55 E-value=1.1 Score=39.55 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH-HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC-MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
-+..+...+.++.|..++.++.+ +.|+...|-. =..++.+.+++..|+.=+...++ |... .|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999999884 4676554433 33678899999999888888877 4444 6666677888888
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
.+.+|...|+......|+++.+...+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999887665544
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=81.54 E-value=19 Score=26.65 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 112 DPATWNSMISGFSQLGM-RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
+...|+.++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33444555544443333 223344445554444455555555555554443
|
|
| >PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes | Back alignment and domain information |
|---|
Probab=81.35 E-value=10 Score=23.49 Aligned_cols=52 Identities=8% Similarity=-0.218 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC 59 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 59 (394)
+.|+...++.++..+++..-++.++..+..+.+.| ..+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999988 46677777777766653
|
ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.11 E-value=55 Score=31.62 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=43.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCC---chHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQS---DTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGR 93 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 93 (394)
+.-+.+.+.+++|....+.... ..| -......+|..+.-.|++++|-...-.|. ..+..-|.-.+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-GNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-cchHHHHHHHHHHhccccc
Confidence 3445667788888877665432 233 34567778888888888888877766655 3333344444444444333
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.92 E-value=9.5 Score=27.69 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCHhhHHHHHHHHHhcCcH---HHHHHHHHhCCC---CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 285 PKQEHFGCMVDLLGRSGRL---DEARELIRELPE---PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~---~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
++..+--.+..++.+..+. .+-+.+++++.+ |... ..-.|.-++.+.++++.+.++.+.+.+.+|+|.++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444444555544433 334445555442 2222 33344456667777777777777777777766544
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.91 E-value=33 Score=28.97 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=8.2
Q ss_pred CCCChHHHHHHHHHh
Q 016128 7 DEPNSVTFISVISAC 21 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~ 21 (394)
+.|....++.+|+.|
T Consensus 107 i~~~~qvf~KliRRy 121 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRY 121 (412)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566666654
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.79 E-value=32 Score=28.67 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 284 KPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.-++.....+...|.+.|++.+|...|-....++...+..++..+...|...++--+ ....+--|.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf--------------i~RaVL~yL 152 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF--------------IARAVLQYL 152 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH--------------HHHHHHHHH
Confidence 346788899999999999999999888665544333333344333334443333111 222333455
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
-.|+...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 667777777777666543
|
; PDB: 3LKU_E 2WPV_G. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.48 E-value=3.6 Score=20.64 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
|+.+.+..+|+++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778888888888778777777666543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=80.45 E-value=16 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888887766
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.33 E-value=38 Score=29.29 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=81.7
Q ss_pred HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh---cCCchHHHHH
Q 016128 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC---HLNSDLGEEM 340 (394)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~---~g~~~~a~~~ 340 (394)
.+.-+.+++++.+. .+.+......+++.+.+..+.++..+-++++.. |+.. .|...+..... ...++.....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34556777887764 335667778888899999999999999998887 6655 88888876654 3456777777
Q ss_pred HHHHHhhC---C--------CCCc-------hHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 341 AMKLQEME---P--------ENPT-------PFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 341 ~~~~~~~~---~--------~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
|.+..+.- . +.+. .+..+...+.++|..+.|..+++.+.+.++-
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 77666521 1 1111 2333444466889999999999999998763
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.22 E-value=23 Score=28.68 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhh-HHHHHHHHHhcCc
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNSA-SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH-FGCMVDLLGRSGR 302 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 302 (394)
.|.....++.|+..|.+.... .|+.. -|+.=+-.+.+..+++.+..--...+ .+.|+... ...+...+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhcc
Confidence 345566788888877777664 56663 34555566677888888777666655 44565443 3344556667778
Q ss_pred HHHHHHHHHhCC
Q 016128 303 LDEARELIRELP 314 (394)
Q Consensus 303 ~~~a~~~~~~~~ 314 (394)
+++|+..+++..
T Consensus 94 ~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 94 YDEAIKVLQRAY 105 (284)
T ss_pred ccHHHHHHHHHH
Confidence 888888887763
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=80.21 E-value=17 Score=29.65 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHh-----hCCCCCchHHHHH----HHHhhcCCcccHHHHHHHhhhcc
Q 016128 335 DLGEEMAMKLQE-----MEPENPTPFVILS----NIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 335 ~~a~~~~~~~~~-----~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.|.+.|+.+.+ +.|.+|.-+...+ ..|--.|+.++|.++.+...+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 455566665554 2344443322222 23445778888777776665543
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.3 bits (165), Expect = 2e-12
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 5/226 (2%)
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194
L + + P + + +L +L + + G +A L+ + A +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 195 KCGQPSWARRFFDQFEIKPD-----DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP 249
Q A + +NA++ G+ R G ++ V + +++ + P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
+ S+ A L G ++ GLK + ++ R+ L ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 310 IRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPF 355
P + + G KL F
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 1e-11
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 7/164 (4%)
Query: 2 KECLSDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC 61
+ P ++ L L + G + + A L
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 62 LPCAHNVFQELKGSR------NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPAT 115
LP AH++ G R + +N ++ G G ++ + + + G PD +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 116 WNSMISGFSQLGMRFEAF-KLFEKMQSTGMVPSLKCVTSVLSAC 158
+ + + + + E+M G+ +LS
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 5e-05
Identities = 19/151 (12%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMEL---FEGLAHEGFKPDPATWNSMISGFSQL 126
+ + S +L + A L G + +N+++ G+++
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 127 GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS-ALKLGKETHGHVIRADLNKDESM 185
G E + ++ G+ P L + L + + + L
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDP 216
L+S + + F + P P
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 6e-09
Identities = 53/422 (12%), Positives = 120/422 (28%), Gaps = 124/422 (29%)
Query: 2 KECLSDEPNSVTFISVISACASL-LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG 60
K + + C S + + ++ L LK S + L + +
Sbjct: 163 KTWV-----------ALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQID 210
Query: 61 CLPCAHN--------VFQELKGSRNILTWNTMIAGMML---NGRSEKAMELFEG----L- 104
+ + ++ L + +L N ++ KA F L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 105 ---------AHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM--QSTGMVPSLKCVTS 153
+ + + E L K +P T+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 154 VLSACADLSALKL-GKETHGHVIRAD----LNKDESMATALISMYMKCGQPSWARRFFDQ 208
L + + + D +N D+ T +I + +P+ R+ FD+
Sbjct: 327 PR-------RLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDR 377
Query: 209 FEIKPDD---PA-----FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260
+ P P W +I + + V + L + V+ +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVI-------KSDVMVVVNKLHKYSLVEKQPKESTISI-- 428
Query: 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIR-----ELPE 315
+ +++ +++ ++++ L H R + + + + +L
Sbjct: 429 --PSIYLELKVKL----ENEYAL-----H---------R--SIVDHYNIPKTFDSDDLIP 466
Query: 316 PTVSVY-HSLLGACWCHL-NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR 373
P + Y +S +G HL N + E M + ++ R+ + +
Sbjct: 467 PYLDQYFYSHIGH---HLKNIEHPERMTL---------------FRMVFLDF-RFLE-QK 506
Query: 374 IR 375
IR
Sbjct: 507 IR 508
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 34/298 (11%), Positives = 80/298 (26%), Gaps = 34/298 (11%)
Query: 90 LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149
+ A +L G K + + ++ L A + +++ + +
Sbjct: 179 FRKDEKNANKLLM--QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE--ALMVDAKCY 234
Query: 150 CVTSVLSACADLSALK----LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205
L + L+A + + K + + D S+ ++ + A +
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294
Query: 206 FDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC-GHA 264
+ + I + ++ P + + A +
Sbjct: 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLHES 352
Query: 265 GHVDKALQIFTMMDDDFGLKPKQE--HF--GCMVDLLGRSGRLDEARELIR---ELPEPT 317
G +K I + D P++ G ++ EAR + +P
Sbjct: 353 GEKNKLYLISNDLVD---RHPEKAVTWLAVGI---YYLCVNKISEARRYFSKSSTM-DPQ 405
Query: 318 VSVYHSLLGACWCHLNSDLGE-EMAM----KLQEMEPENPTPFVILSNIYAGLGRWED 370
H + GE + A+ + P++ L + LG
Sbjct: 406 FGPAWIGFA----HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 56/228 (24%)
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKL 135
N+ + +A + +G K + L P+ TW ++ + + EA +
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRY 395
Query: 136 FEKMQSTGMVPSLKCVTSVLSACADLSALKLGK---ETH---GHVIRADLNKDESMA--- 186
F K + + H + D++++
Sbjct: 396 FSK------------------------SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431
Query: 187 TAL------------ISM-YMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEY 232
TA + M +M+ G A + + + DP N + +
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491
Query: 233 ESAVEIFD--LMQQEKVKPNSASFVAVLSACGHA----GHVDKALQIF 274
++A+ F L+ +K + N + A + GHA D A+
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 32/191 (16%)
Query: 185 MATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243
AT ++M G+ A + +K D A + G+ + A + F +
Sbjct: 43 RATVFLAM----GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK--K 96
Query: 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRL 303
K P+ A D+ ++ + D
Sbjct: 97 VLKSNPSEQ---EEKEAESQLVKADEMQRLRSQALD-----------------AFDGADY 136
Query: 304 DEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGE--EMAMKLQEMEPENPTPFVILS 359
A + ++ E + L C+ + + +++ +N F +S
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEG-EPRKAISDLKAASKLKSDNTEAFYKIS 195
Query: 360 NIYAGLGRWED 370
+Y LG E
Sbjct: 196 TLYYQLGDHEL 206
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 51/316 (16%), Positives = 90/316 (28%), Gaps = 49/316 (15%)
Query: 77 NILTWNTM-IAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFK 134
N + + + + G+S+ A+ K D A + G EA
Sbjct: 36 NYIAYYRRATVFLAM-GKSKAALPDLT-KVIA-LKMDFTAARLQRGHLLLKQGKLDEAED 92
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194
F+K LK S S L E +A
Sbjct: 93 DFKK--------VLKSNPSEQEEKEAESQLVKADEMQRLRSQAL-------------DAF 131
Query: 195 KCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253
+ A F D+ E+ D + + GE A+ K+K ++
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKSDNTE 189
Query: 254 FVAVLSACGHA-GHVDKALQIFTM---MDDDF-------GLKPKQEHFGCMVDLLGRSGR 302
+S + G + +L +D D K + L R GR
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 249
Query: 303 LDEA----RELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAM----KLQEMEPENPTP 354
+A +++ P S C C + E A+ ++ +MEP+N
Sbjct: 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE-AIRICSEVLQMEPDNVNA 308
Query: 355 FVILSNIYAGLGRWED 370
+ Y +++
Sbjct: 309 LKDRAEAYLIEEMYDE 324
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-07
Identities = 53/304 (17%), Positives = 91/304 (29%), Gaps = 48/304 (15%)
Query: 88 MMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146
+ + G+S+ A+ + K D A + G EA F+K
Sbjct: 71 LAM-GKSKAALPDLT-KVIQ-LKMDFTAARLQRGHLLLKQGKLDEAEDDFKK-------- 119
Query: 147 SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFF 206
LK S S L E +A G + A F
Sbjct: 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL-------------NAFGSGDYTAAIAFL 166
Query: 207 DQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA- 264
D+ E+ D + + GE A+ DL K+K ++ +S +
Sbjct: 167 DKILEVCVWDAELRELRAECFIKEGEPRKAIS--DLKAASKLKNDNTEAFYKISTLYYQL 224
Query: 265 GHVDKALQIFTM---MDDDF-------GLKPKQEHFGCMVDLLGRSGRLDEA----RELI 310
G + +L +D D K + L R GR +A ++
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284
Query: 311 RELPEPTVSVYHSLLGACWCHLNSDLGEEMAM----KLQEMEPENPTPFVILSNIYAGLG 366
+ P S C C + E A+ ++ +MEP+N + Y
Sbjct: 285 KTEPSIAEYTVRSKERICHCFSKDEKPVE-AIRVCSEVLQMEPDNVNALKDRAEAYLIEE 343
Query: 367 RWED 370
+++
Sbjct: 344 MYDE 347
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 47/326 (14%), Positives = 96/326 (29%), Gaps = 90/326 (27%)
Query: 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFE-AFK 134
+ I ++ ++ + L L P P +W ++ + +G + E A +
Sbjct: 55 HASCLPVHIGTLVELNKANELFYLSHKLVD--LYPSNPVSWFAVGCYYLMVGHKNEHARR 112
Query: 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK---ETH---GHVIRADLNKDESMA-- 186
K A L K GH + D++MA
Sbjct: 113 YLSK------------------------ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148
Query: 187 -TAL------------ISM-YMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGE 231
TA I + Y A RFF Q I P+DP + + +NGE
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208
Query: 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG 291
+++A + F AL+ + ++ + +
Sbjct: 209 WKTAEKWF----------------------------LDALEKIKAIGNEVTVDKWEPLLN 240
Query: 292 CMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGE-----EMAMKL 344
+ + + + EA + R+ P + +S +G + + A+ L
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-NFENAVDYFHTALGL 299
Query: 345 QEMEPENPTPFVILSNIYAGLGRWED 370
+ ++ +L + +
Sbjct: 300 R---RDDTFSVTMLGHCIEMYIGDSE 322
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 25/194 (12%), Positives = 59/194 (30%), Gaps = 20/194 (10%)
Query: 188 ALISMYMKCGQPSWARRFFDQF---EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQ 244
+ D+ + + F S Y + ++A+
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH---- 125
Query: 245 EKVKPNSASFVAVLSACGHA-GHVDKALQIFTMM---DDDFGLKPKQEHFGCMVDLLGRS 300
+ +S +A+ +D A + M D+D + V L
Sbjct: 126 ---QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGG 179
Query: 301 GRLDEARELIRELPE--PTVSVYHSLLGACWCHL-NSDLGEEMAMKLQEMEPENPTPFVI 357
+L +A + +E+ + + + AC + E + + + + +P +
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 358 LSNIYAGLGRWEDV 371
L + LG+ +V
Sbjct: 240 LVVLSQHLGKPPEV 253
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 23/190 (12%)
Query: 193 YMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS 251
+ +C + + F + P ++ + + Y G+ + A+E + ++KP+
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDF 100
Query: 252 ASFVAVL-SACGHAGHVDKALQIFTMMDDDFGLKPK--QEHFGCMVDLLGRSGRLDEARE 308
L +A AG ++ A+Q + P + +LL GRL+EA+
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSA---LQYNPDLYCVRSD-LGNLLKALGRLEEAKA 156
Query: 309 LIR---ELPEPTVSVYHSLLGACWCHLNSDLGE-----EMAMKLQEMEPENPTPFVILSN 360
E +P +V S LG + ++ E A+ L P ++ L N
Sbjct: 157 CYLKAIET-QPNFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVTLD---PNFLDAYINLGN 211
Query: 361 IYAGLGRWED 370
+ ++
Sbjct: 212 VLKEARIFDR 221
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 8e-05
Identities = 18/167 (10%), Positives = 40/167 (23%), Gaps = 12/167 (7%)
Query: 210 EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA-GHVD 268
+ P+ + G + + + Q + P +A A V
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 269 KALQIFTMMDDDFGLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLL 325
+ L + GL P+Q + ++ + P V +
Sbjct: 124 RLLPVL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180
Query: 326 GACWCHLNSDLGEEMA--MKLQEMEPENPTPFVILSNIYAGLGRWED 370
G L + + + + P+ L +
Sbjct: 181 GGGKQALE-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 32/188 (17%), Positives = 50/188 (26%), Gaps = 50/188 (26%)
Query: 193 YMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS 251
YM+ A + + P + W Y + A E F
Sbjct: 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF------------ 65
Query: 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEAR 307
+AL I KP ++G L GR R E+
Sbjct: 66 ----------------RQALSI----------KPDSAEINNNYG--WFLCGRLNRPAESM 97
Query: 308 EL----IRELPEPTVSVYHSLLGACWCHL-NSDLGEEMAMKLQEMEPENPTPFVILSNIY 362
+ + PT + + G C L E + +P+ P F L+
Sbjct: 98 AYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157
Query: 363 AGLGRWED 370
G+ D
Sbjct: 158 MLAGQLGD 165
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 34/232 (14%), Positives = 63/232 (27%), Gaps = 45/232 (19%)
Query: 51 ALVDMYLKCGCLPCAHNVFQE---LKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE 107
DM A N+++ +N+L + + EK ++ L
Sbjct: 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 108 GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167
+ + + +F+K A +
Sbjct: 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK------------------------AREDA 164
Query: 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGY 226
+ H + A AL+ Y S A + F+ + D P + A I
Sbjct: 165 RTRHHVYVTA----------ALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 213
Query: 227 GRNGEYESAVEIFDL------MQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272
E + +F+ + EK A F+A S G + K +
Sbjct: 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 5e-04
Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Query: 179 LNKDESMATALISMYMKCGQPSWARRFFDQF--EIKPDDPAFWNAMISGYGRNGEYESAV 236
L + + M A +++ + + + A +YE
Sbjct: 60 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119
Query: 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274
I++ + + + ++ + A + IF
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 45/340 (13%), Positives = 98/340 (28%), Gaps = 69/340 (20%)
Query: 70 QELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPA---------TWNSMI 120
+ N + L G++E A+E A E + + A TW +
Sbjct: 43 EFQNREFKATMCNLLAYLKHLKGQNEAALECLR-KAEELIQQEHADQAEIRSLVTWGNYA 101
Query: 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180
+ +G + +K + ++
Sbjct: 102 WVYYHMGRLSDVQIYVDK------------------------VKHVCEKFSSPYRIESPE 137
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
D + Q A+ F++ E KP +P F + + R + +
Sbjct: 138 LDCEEGWTRLKCGGN--QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195
Query: 240 DLMQQ-EKVKPNSASF-----VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEH-FGC 292
D ++Q ++ P++ + + + ++ + P
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE---KAPGVTDVLRS 252
Query: 293 MVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACW---------CHLNSDLGEEMA 341
R D+A EL+++ E P + H +G C+ N G+
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 342 MKLQ-----------EMEPENPTPFVILSNIYAGLGRWED 370
++L E IL++++A ++E+
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 22/181 (12%), Positives = 51/181 (28%), Gaps = 41/181 (22%)
Query: 81 WNTMIAGMML--NGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFE 137
W ++ G+ N + A+ A P A ++ + A
Sbjct: 58 WRSL--GLTQAENEKDGLAIIALN-HARM-LDPKDIAVHAALAVSHTNEHNANAALASLR 113
Query: 138 KMQSTGMVPSLKCVTSVLSACADLSALKLG---KETHGHVIRADLNKDESMATALISMYM 194
L ++ ++AD++ D+ + +
Sbjct: 114 A------------------------WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149
Query: 195 KCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFD--LMQQEKVKPNS 251
+ R E+ P+D ++ Y + Y+SA + +++P+
Sbjct: 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV----ELRPDD 205
Query: 252 A 252
A
Sbjct: 206 A 206
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 179 LNKDESMATALISM---YMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYES 234
E L ++ + G+ A++ F + D ++ + + G YE
Sbjct: 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70
Query: 235 AVEIFDLMQQEKVKPNSASFVAVLSACGHA-GHVDKALQIF 274
A++ + + N F + C G +D A F
Sbjct: 71 ALQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGF 109
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.78 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.76 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.7 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.69 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.66 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.65 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.65 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.58 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.58 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.52 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.51 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.39 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.38 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.35 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.34 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.33 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.32 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.3 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.28 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.25 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.24 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.22 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.21 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.21 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.2 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.2 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.15 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.12 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.11 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.08 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.05 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.05 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.03 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.02 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.0 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.96 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.96 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.94 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.93 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.91 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.91 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.91 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.9 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.89 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.87 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.87 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.86 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.86 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.84 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.83 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.83 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.82 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.81 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.81 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.8 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.77 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.65 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.65 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.63 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.63 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.61 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.56 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.54 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.53 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.52 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.47 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.41 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.41 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.24 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.17 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.97 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.74 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.19 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.89 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.81 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.53 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.33 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.29 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.26 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.14 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.62 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.0 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.33 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.84 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.75 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.72 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.52 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 93.35 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.54 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.08 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.96 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.19 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.51 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.42 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.01 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 87.86 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 87.2 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.32 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.63 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.94 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.78 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.73 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.59 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.51 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=283.51 Aligned_cols=265 Identities=8% Similarity=-0.021 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISM 192 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (394)
..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 3333344444444444444444444443322 1133334444444444444444444444444332 3467788888899
Q ss_pred HHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 016128 193 YMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKAL 271 (394)
Q Consensus 193 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 271 (394)
|.+.|++++|.++|+++... |.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999887653 5677889999999999999999999999988764 347788899999999999999999
Q ss_pred HHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CC--hhhHHHHHHHHHhcCCchHHHHHH
Q 016128 272 QIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--------PT--VSVYHSLLGACWCHLNSDLGEEMA 341 (394)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~--~~~~~~l~~~~~~~g~~~~a~~~~ 341 (394)
++|+.+.+. .+.++.+|+.++..|.+.|++++|.++|+++.+ |+ ..+|..++.+|.+.|++++|.+.+
T Consensus 462 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 462 EYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998863 345788899999999999999999999988743 55 338999999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 342 MKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+++.+.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=287.59 Aligned_cols=365 Identities=10% Similarity=-0.038 Sum_probs=323.3
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAG 87 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~ 87 (394)
++...|+.++..|.+.|++++|.++|+.+... .|+..++..++.+|.+.|++++|+.+|+++.. +++..+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 67889999999999999999999999999954 46778999999999999999999999999854 6889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 016128 88 MMLNGRSEKAMELFEGLAHE---------------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVT 152 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~---------------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (394)
|.+.|++++|.++|+++... |..++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953222 23346889999999999999999999999999876422 333333
Q ss_pred H--------------------------------------HHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 153 S--------------------------------------VLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 153 ~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
. ++..|.+.|++++|.++++++.+. +++..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 2 255667889999999999998876 478999999999999
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQI 273 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 273 (394)
+.|++++|..+|+++... |.+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998654 6678889999999999999999999999998764 45788999999999999999999999
Q ss_pred HHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 274 FTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+ |+.. +|..++.+|.+.|++++|.+.|+++.+..|.
T Consensus 396 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 396 FSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999863 345678999999999999999999999998865 5444 9999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
++.+|..++.+|.+.|++++|+++++++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=237.28 Aligned_cols=358 Identities=11% Similarity=0.014 Sum_probs=310.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS 94 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~ 94 (394)
+...+.+.|++++|.+.+..+.+.. |.+...+..+...+.+.|++++|...++.... +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3456778999999999999988776 66677888888899999999999999988765 55778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHH
Q 016128 95 EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHV 174 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (394)
++|+..|+++.+... .+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999988632 256789999999999999999999999998764 334566778888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh
Q 016128 175 IRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253 (394)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (394)
.+.. +.+..++..+...+...|++++|...|+++... |.+...|..+...+...|++++|+..+++..+... .+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHH
Confidence 8875 346788999999999999999999999997654 66677899999999999999999999999988642 35788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
+..+...+...|++++|...++.+.+. .+.++.++..+...+.+.|++++|...|+++.+ |+.. ++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 889999999999999999999999863 344577899999999999999999999999876 6555 99999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 331 HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.|++++|...++++.+..|+++.++..++.++.+.|++++|...++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-31 Score=230.84 Aligned_cols=353 Identities=12% Similarity=0.070 Sum_probs=312.5
Q ss_pred CCC-hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHH
Q 016128 8 EPN-SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTM 84 (394)
Q Consensus 8 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 84 (394)
.|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|+..|+++.. +.+..+|..+
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 454 4566667777888999999999999998776 77889999999999999999999999999875 4456789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 85 IAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+..++...|++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999987432 56677888999999999999999999998763 34678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++|...++++.+.+. .+...+..+...+...|++++|...|++.... |.++.++..+...+...|++++|+..|+++.
T Consensus 186 ~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999998763 46788999999999999999999999987554 6678889999999999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-h
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-V 320 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~ 320 (394)
+.+. .+..++..+...+.+.|++++|...++.+.+ ..+.+..++..+...+.+.|++++|...++++.+ |+.. +
T Consensus 265 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 265 ELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 8742 3577899999999999999999999999987 3466788999999999999999999999999987 6666 9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
+..++.++.+.|++++|...++++.+..|.++..+..++..+.+.|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999998887664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=250.69 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=179.0
Q ss_pred CccccCCCCCh-HHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC---------hhHHHHHHH
Q 016128 1 MKECLSDEPNS-VTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC---------LPCAHNVFQ 70 (394)
Q Consensus 1 M~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~ 70 (394)
|+++ ++.+++ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|+
T Consensus 16 ~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 16 AKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 3455 666554 46899999999999999999999999999999999999999999998765 688999999
Q ss_pred Hhcc---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 016128 71 ELKG---SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS 147 (394)
Q Consensus 71 ~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 147 (394)
+|.. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 9986 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC 196 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (394)
..||+.+|.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=242.64 Aligned_cols=200 Identities=9% Similarity=0.055 Sum_probs=173.3
Q ss_pred HHHHHHHhcc---C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------HHH
Q 016128 65 AHNVFQELKG---S-RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM---------RFE 131 (394)
Q Consensus 65 A~~~~~~~~~---~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---------~~~ 131 (394)
+..+.+++.. . .....++.+|++|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3444455543 1 22345888899999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 132 AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C--CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 016128 212 K--PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA 264 (394)
Q Consensus 212 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (394)
. .||..+|+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 6 6788999999999999999999999999999999999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-28 Score=220.50 Aligned_cols=365 Identities=10% Similarity=-0.048 Sum_probs=313.6
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
...+......+.+.|++++|.+.|+.+++.+ |+..++..+..++.+.|++++|+..|+++.. +.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4567778888999999999999999999876 6899999999999999999999999999875 45677899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---------------------------------------------------------
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKP--------------------------------------------------------- 111 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p--------------------------------------------------------- 111 (394)
.+.|++++|...|+++...+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999987764211
Q ss_pred ---------------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHH
Q 016128 112 ---------------------DPATWNSMISGFSQ---LGMRFEAFKLFEKMQS-----TGM--------VPSLKCVTSV 154 (394)
Q Consensus 112 ---------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~l 154 (394)
+...+......+.. .|++++|+..|+++.+ ... +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 13333444444443 8999999999999987 311 2235677888
Q ss_pred HHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChh
Q 016128 155 LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYE 233 (394)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 233 (394)
..++...|++++|...++++.+.... ...+..+..++...|++++|...++++... |.+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 89999999999999999999987644 888899999999999999999999997765 667888999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 234 SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+|+..++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988753 36678889999999999999999999999864 3445678899999999999999999999988
Q ss_pred CC--CCh-------hhHHHHHHHHHh---cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 314 PE--PTV-------SVYHSLLGACWC---HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 314 ~~--~~~-------~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.. |+. ..+..+..++.. .|++++|...++++.+..|.++.++..++.++.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 75 322 288899999999 999999999999999999999999999999999999999999999998875
Q ss_pred c
Q 016128 382 Q 382 (394)
Q Consensus 382 ~ 382 (394)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-27 Score=209.92 Aligned_cols=339 Identities=13% Similarity=0.049 Sum_probs=265.4
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016128 30 GRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 30 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 107 (394)
+...+..+.... +.+...+..+...+.+.|++++|+.+|+++.. +.+..+|..+...+...|++++|+..|+++.+.
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444444 56777888888889999999999999988765 456778888888999999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H---HHHHHH------------HHHhhccchhhHHHHHH
Q 016128 108 GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS-L---KCVTSV------------LSACADLSALKLGKETH 171 (394)
Q Consensus 108 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~l------------~~~~~~~~~~~~a~~~~ 171 (394)
+.. +..++..+..+|.+.|++++|...|+++.+.. |+ . ..+..+ ...+...|++++|...+
T Consensus 90 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 533 67888888899999999999999999888753 33 3 444444 44478889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 016128 172 GHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN 250 (394)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (394)
+++.+.. +.+..++..++.+|...|++++|...|+++... |.++.+|..+...|...|++++|+..|+++.+... .+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 9998775 347888889999999999999999999987654 67788899999999999999999999999987632 23
Q ss_pred HhhHHHH------------HHHHHccCCHHHHHHHHHHchhcCCCCCC-----HhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 251 SASFVAV------------LSACGHAGHVDKALQIFTMMDDDFGLKPK-----QEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 251 ~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
...+..+ +..+...|++++|...|+.+.+. .|+ ...+..+...+.+.|++++|...++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444 78888999999999999999864 343 347788889999999999999999988
Q ss_pred CC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH------------HHhhcC-----CcccHHH
Q 016128 314 PE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN------------IYAGLG-----RWEDVGR 373 (394)
Q Consensus 314 ~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~ 373 (394)
.+ |+.. +|..++.+|...|++++|...++++.+..|.++..+..+.. .|...| +.+++.+
T Consensus 322 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 75 6655 99999999999999999999999999999999888888883 355555 4455666
Q ss_pred HHHH
Q 016128 374 IRQM 377 (394)
Q Consensus 374 ~~~~ 377 (394)
.+++
T Consensus 402 ~y~~ 405 (450)
T 2y4t_A 402 AYRK 405 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-26 Score=207.90 Aligned_cols=356 Identities=10% Similarity=0.001 Sum_probs=293.5
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..++...|++++|+..|+++.. +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356778889999999999999999999999775 66899999999999999999999999999876 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDP---ATWNSM------------ISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCV 151 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (394)
.|.+.|++++|.+.|+++.+.... +. .++..+ ...+...|++++|+..|+++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999986322 33 555555 445889999999999999998764 4578889
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHH--------
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAM-------- 222 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l-------- 222 (394)
..+..++...|++++|.+.++++.+.. +.+..++..++.+|...|++++|...|+++... |.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875 347889999999999999999999999998655 5555656555
Q ss_pred ----HHHHhhcCChhhHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHH
Q 016128 223 ----ISGYGRNGEYESAVEIFDLMQQEKVKPN-----SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCM 293 (394)
Q Consensus 223 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 293 (394)
...+...|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|...++.+.+. .+.+...+..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 888999999999999999998863 44 347888899999999999999999998863 34468899999
Q ss_pred HHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH------------HHhcC-----CchHHHHHHHH-HHhhCCCCC
Q 016128 294 VDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA------------CWCHL-----NSDLGEEMAMK-LQEMEPENP 352 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~ 352 (394)
..+|...|++++|...|+++.+ |+.. .+..+..+ |...| +.+++.+.+++ +.+..|++.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999976 7666 67666633 33344 56778888886 666666543
Q ss_pred c----------hHHHHHHHHhhcCCcccHH
Q 016128 353 T----------PFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 353 ~----------~~~~l~~~~~~~g~~~~a~ 372 (394)
. .+..+..+|...++.+++.
T Consensus 416 ~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 416 QNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2 4556666666666665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=206.41 Aligned_cols=365 Identities=10% Similarity=0.018 Sum_probs=296.8
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
...|..+...+.+.|++++|.+.|+.+++.. +.+..++..+..++.+.|++++|++.|+++.. +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567788888999999999999999999887 67889999999999999999999999999875 55678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC------------------------------------CCCHH------------------
Q 016128 89 MLNGRSEKAMELFEGLAHEGF------------------------------------KPDPA------------------ 114 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~------------------ 114 (394)
...|++++|...|+.+....- .|+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999999999964321110 01111
Q ss_pred ------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHhhccchhhHH
Q 016128 115 ------------TWNSMISGFSQ--------LGMRFEAFKLFEKMQSTGMVPS-------LKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 115 ------------~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a 167 (394)
....+...+.. .|++++|+.+|+++.+... .+ ..++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11122222221 2478899999999987532 22 23466677788889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (394)
...++.+.+.. |+...+..+...+...|++++|...+++.... |.++.+|..+...+...|++++|+..++++.+..
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999875 45888889999999999999999999987654 6778889999999999999999999999998875
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-----
Q 016128 247 VKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----- 319 (394)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----- 319 (394)
. .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...|+++.+ |+..
T Consensus 341 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 P-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp T-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 3 35678889999999999999999999999874 345577889999999999999999999999865 2111
Q ss_pred --hHHHHHHHHHhc----------CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 --VYHSLLGACWCH----------LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 --~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.+.....++... |++++|...++++.+..|.++.++..++.++.+.|++++|.+.++++.+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 244455677777 999999999999999999999999999999999999999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-25 Score=200.87 Aligned_cols=347 Identities=12% Similarity=-0.019 Sum_probs=292.8
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C-------
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-N------- 77 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~------- 77 (394)
..|+...|..+..++.+.|++++|.+.++.+++.+ +.+..++..+..++.+.|++++|...|+++.. .| +
T Consensus 35 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (514)
T 2gw1_A 35 LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113 (514)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH
T ss_pred cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHH
Confidence 35899999999999999999999999999999877 66788999999999999999999999998754 11 1
Q ss_pred ------------------------------------------------------------------------hhHHHHHH
Q 016128 78 ------------------------------------------------------------------------ILTWNTMI 85 (394)
Q Consensus 78 ------------------------------------------------------------------------~~~~~~ll 85 (394)
...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 22222333
Q ss_pred HHHHh---cCCHHHHHHHHHHHHh-----cCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 016128 86 AGMML---NGRSEKAMELFEGLAH-----EGFK--------PDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 86 ~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 149 (394)
..+.. .|++++|...|+++.+ .... .+..++..+...+...|++++|...|+++.+.. |+..
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 33333 8999999999999988 3111 245678889999999999999999999998864 3388
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhh
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGR 228 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~ 228 (394)
.+..+..++...|++++|...++.+.+... .+..++..+...+...|++++|...|++.... |.+...+..+...+..
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 889999999999999999999999988753 46778889999999999999999999997655 6677889999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHh---cC
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGR---SG 301 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g 301 (394)
.|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998864 336678889999999999999999999998764122222 3388899999999 99
Q ss_pred cHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 302 RLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 302 ~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
++++|...++++.+ |+.. ++..+..++...|++++|...++++.+..|.++..+..+
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999876 6656 899999999999999999999999999999888777665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-23 Score=181.01 Aligned_cols=313 Identities=12% Similarity=0.027 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
.+..+...+...|++++|+..|+++.. +.+..++..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 334444444444444444444444432 223344444444444555555555555544443211 34444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCHHHHHH------------HHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016128 126 LGMRFEAFKLFEKMQSTGMV--PSLKCVTS------------VLSACADLSALKLGKETHGHVIRADLNKDESMATALIS 191 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~--~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 191 (394)
.|++++|...|++..+.... .+...+.. +...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55555555555554443110 12222222 2456667777777777777777664 345677777777
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHH------------HHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFV------------AVL 258 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~ 258 (394)
++...|++++|...+++.... |.++..+..+...+...|++++|...+++..+.... +...+. .+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888776554 566777778888888888888888888887765322 233222 235
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQ----EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~ 331 (394)
..+...|++++|...++.+.+. . +.+. ..+..+...+.+.|++++|...+++..+ |+.. ++..+..++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 6678888999999888888764 1 2222 2344567788888999999988888875 6555 888888889999
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
|++++|...++++.+..|.++..+..+..+....
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999998888887777765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=176.48 Aligned_cols=301 Identities=12% Similarity=0.095 Sum_probs=256.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
++..+..+...+...|++++|+..|+++.+.... +..++..+..++...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888899999999999999999999987433 68899999999999999999999999998764 336788999999
Q ss_pred HhhccchhhHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHH
Q 016128 157 ACADLSALKLGKETHGHVIRADLN--KDESMATAL------------ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNA 221 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 221 (394)
++...|++++|...++++.+.... .+...+..+ ...+...|++++|...++++... |.++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999887530 244444444 57889999999999999997654 677888999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHH----------
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFG---------- 291 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 291 (394)
+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 447788999999999999999999999999864 223333332
Q ss_pred --HHHHHHHhcCcHHHHHHHHHhCCC--CChh-----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 292 --CMVDLLGRSGRLDEARELIRELPE--PTVS-----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 292 --~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
.+...+.+.|++++|...++++.+ |+.. .+..+..++...|++++|+..++++.+..|.++.++..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 236678999999999999998876 5543 3556778999999999999999999999999999999999999
Q ss_pred hhcCCcccHHHHHHHhhhcc
Q 016128 363 AGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~~~ 382 (394)
.+.|++++|...++++.+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-22 Score=182.83 Aligned_cols=342 Identities=11% Similarity=-0.003 Sum_probs=275.5
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChh---------
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNIL--------- 79 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 79 (394)
.+...|..+..++.+.|++++|.+.++.+++.+ +.+..++..+..++...|++++|+..|+.+...|+..
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 135 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 367889999999999999999999999999887 6688899999999999999999999997553222211
Q ss_pred ------------------------------------------------------------HHHHHHHHHH--------hc
Q 016128 80 ------------------------------------------------------------TWNTMIAGMM--------LN 91 (394)
Q Consensus 80 ------------------------------------------------------------~~~~ll~~~~--------~~ 91 (394)
....+...+. ..
T Consensus 136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 215 (537)
T 3fp2_A 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215 (537)
T ss_dssp HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1111111111 12
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchh
Q 016128 92 GRSEKAMELFEGLAHEGFKPD-------PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSAL 164 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (394)
|++++|..+++++.+.... + ..++..+...+...|++++|...|++..+. .|+...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 4789999999999886332 2 335777778889999999999999999886 45688899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++|...++++.+... .+..++..+...+...|++++|...|++.... |.+...|..+...+...|++++|...++++.
T Consensus 293 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999988763 47888999999999999999999999997654 6677889999999999999999999999998
Q ss_pred HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCC----CCCCHhhHHHHHHHHHhc----------CcHHHHHHH
Q 016128 244 QEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFG----LKPKQEHFGCMVDLLGRS----------GRLDEAREL 309 (394)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~ 309 (394)
+.. +.+...+..+...+...|++++|...++.+.+... .......+..+...+... |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 874 33667888999999999999999999999875311 111222344556677777 999999999
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
|++..+ |+.. ++..+..++...|++++|.+.|+++.+..|.++....
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999876 6666 9999999999999999999999999999998766544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-22 Score=170.97 Aligned_cols=289 Identities=10% Similarity=-0.018 Sum_probs=157.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
+.+...+..+...+...|++++|+++|+++.. +.+...+..++..+...|++++|..+++++.+.... +..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 34445555555566666666666666665543 233444555555556666666666666666554222 445555555
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc
Q 016128 121 SGFSQLG-MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQP 199 (394)
Q Consensus 121 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 199 (394)
..+...| ++++|...|++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 155 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------------------- 155 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---------------------
Confidence 5566666 5666666666555432 2233444455555555555555555555544443
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 200 SWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
|.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 156 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 156 -------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp -------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2233334444444445555555555555544432 12344444555555555555555555554443
Q ss_pred cC-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 280 DF-------GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 280 ~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
.. ..+....++..+...|...|++++|...+++..+ |+.. .+..+..++...|++++|.+.++++.+..|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 10 0123345666666666666666666666666654 4444 677777777777777777777777777777
Q ss_pred CCCchHHHHHHHH-hhcCCc
Q 016128 350 ENPTPFVILSNIY-AGLGRW 368 (394)
Q Consensus 350 ~~~~~~~~l~~~~-~~~g~~ 368 (394)
.++..+..++.++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 7777777777766 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-21 Score=166.06 Aligned_cols=285 Identities=9% Similarity=0.023 Sum_probs=207.3
Q ss_pred CCCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHH
Q 016128 6 SDEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNT 83 (394)
Q Consensus 6 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 83 (394)
+.+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++.++...|++++|..+++++.. +.+...|..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 355677788889999999999999999999999876 66777788888999999999999999999876 457788999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 84 MIAGMMLNG-RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 84 ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
+...+...| ++++|...|++..+.... +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 999999999999987433 67789999999999999999999999998764 234456666777788888
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC----------CCChhhHHHHHHHHhhcCCh
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK----------PDDPAFWNAMISGYGRNGEY 232 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~ 232 (394)
++++|...++++.+.. +.+..++..+...+...|++++|...+++.... +.....+..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 8888888888877664 335666667777777777777777777665432 22344556666666666666
Q ss_pred hhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 233 ESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
++|+..+++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 666666666655432 24455555555566666666666666655531 122344444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-19 Score=162.92 Aligned_cols=352 Identities=12% Similarity=-0.002 Sum_probs=298.1
Q ss_pred ChHHHHHHHHHhhh----hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHH
Q 016128 10 NSVTFISVISACAS----LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTW 81 (394)
Q Consensus 10 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 81 (394)
+...+..+-..+.. .++++.|.+.|+...+.| ++..+..|...|.. .+++++|...|++.....+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666766 789999999999988765 66788889999998 89999999999998866788888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 82 NTMIAGMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 82 ~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888888 889999999999998875 67788888888887 789999999999998875 5677888
Q ss_pred HHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHH
Q 016128 154 VLSACAD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISG 225 (394)
Q Consensus 154 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 225 (394)
+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|..+|++.... .++..+..+...
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~ 264 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 8888877 899999999999998875 56778888888887 78999999999997765 456677788888
Q ss_pred Hhh----cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 226 YGR----NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHA-----GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 226 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
|.. .+++++|+..|++..+.| +...+..+...|... +++++|..+++...+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998765 566777788888776 8999999999999875 3 45677778888
Q ss_pred HHhcC---cHHHHHHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh----
Q 016128 297 LGRSG---RLDEARELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG---- 364 (394)
Q Consensus 297 ~~~~g---~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 364 (394)
|...| ++++|.++|++..+.+.. .+..+...|.. .+++++|...|+++.+.+ ++.++..|+.+|.+
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 899999999998875555 88899999988 899999999999998865 57789999999998
Q ss_pred cCCcccHHHHHHHhhhccc
Q 016128 365 LGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~~ 383 (394)
.+++++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988773
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=175.06 Aligned_cols=300 Identities=11% Similarity=-0.006 Sum_probs=195.5
Q ss_pred HhcCChhHHHH-HHHHhcc-C---C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH
Q 016128 57 LKCGCLPCAHN-VFQELKG-S---R--NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129 (394)
Q Consensus 57 ~~~g~~~~A~~-~~~~~~~-~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 129 (394)
.-.|++++|.. .|++... . | +...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34466666666 6664432 1 1 234455666666666666666666666666532 2555666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 130 FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.... +...+..+... .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~--------- 176 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A--------- 176 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h---------
Confidence 66666666665543 234555555555555566666666665555554321 11111000000 0
Q ss_pred hcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 210 EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
........+..+...+ ..|++++|+..++++.+..... +..++..+...+...|++++|...++.+.+. .+.+..
T Consensus 177 -~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 252 (368)
T 1fch_A 177 -GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYL 252 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred -hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHH
Confidence 0000000111233333 8889999999999988764321 4788888999999999999999999998763 344577
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-----------Cch
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-----------PTP 354 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~ 354 (394)
.+..+...+...|++++|...|+++.+ |+.. ++..+..++...|++++|...++++.+..|.+ ..+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 888999999999999999999998876 6655 89999999999999999999999999988877 688
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 355 FVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 355 ~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
|..++.++...|++++|..++++..
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999999999887543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-20 Score=167.06 Aligned_cols=370 Identities=9% Similarity=-0.055 Sum_probs=227.5
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhh--------cCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc------
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIE--------KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG------ 74 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 74 (394)
.....|+.+...+...|++++|++.|++.++.. -+....+|+.+..+|...|++++|...+++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678888888888888888888888766421 122356788888888888888888888876543
Q ss_pred C----CChhHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCC
Q 016128 75 S----RNILTWNTMIAGMMLN--GRSEKAMELFEGLAHEGFKPDPATWNSMISG---FSQLGMRFEAFKLFEKMQSTGMV 145 (394)
Q Consensus 75 ~----~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~ 145 (394)
. ....++..+..++... +++++|++.|++..+..+. ++..+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1234565555555443 4688888888888776332 45555555444 345567778888888777653 3
Q ss_pred CCHHHHHHHHHHh----hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHH
Q 016128 146 PSLKCVTSVLSAC----ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWN 220 (394)
Q Consensus 146 ~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~ 220 (394)
.+...+..+...+ ...+++++|.+.+++..... +.+..++..+...|...|++++|...+++.... |.+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 3455555444433 34567788888888887765 346777788888888888888888888886554 55666666
Q ss_pred HHHHHHhhc-------------------CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 221 AMISGYGRN-------------------GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 221 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.+..+|... +..+.|...+++..+.. +.+..++..+...+...|++++|+..|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 666655322 23566777777776654 235567777888888888888888888887754
Q ss_pred CCCCCH--hhHHHHHH-HHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 282 GLKPKQ--EHFGCMVD-LLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 282 ~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
...+.. ..+..+.. .+...|++++|+..|++..+ |+....... ...+..++++..+.+|.++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 222211 12222222 23467888888888887665 443322221 23445667777788899999999
Q ss_pred HHHHHHhhcCCcccHHHHHHHhhhccccccCCCCCC
Q 016128 357 ILSNIYAGLGRWEDVGRIRQMINDRQLTKLPGISAG 392 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 392 (394)
.++.+|...|++++|++.+++..+.+.......+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999877666677765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-19 Score=163.16 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAGM 88 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~~ 88 (394)
|...|..++.. .+.|+++.|..+|+.+++.. |.+...|..++..+.+.|++++|..+|++... .|+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56788888884 77899999999999999875 77888999999999999999999999999876 57777777777533
Q ss_pred -HhcCCHHHHHH----HHHHHHhc-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHh
Q 016128 89 -MLNGRSEKAME----LFEGLAHE-GFKP-DPATWNSMISGFSQ---------LGMRFEAFKLFEKMQS 141 (394)
Q Consensus 89 -~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 141 (394)
...|+.++|.+ +|+..... |..| +...|...+..... .|++++|..+|++..+
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 34577766655 77766553 5444 56677777776654 6788999999998887
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=163.97 Aligned_cols=287 Identities=15% Similarity=0.073 Sum_probs=182.7
Q ss_pred hhhHhHHHHHH-HHHHHHhhhc---CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHH
Q 016128 22 ASLLYLQFGRQ-VHGLTLKIEK---QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 22 ~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~ 95 (394)
...|+++.|.+ .++...+... ..+...+..+...+.+.|++++|+..|+++.. +.+..+|..+...+...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34567788887 7776554331 11356688899999999999999999999875 457788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHhhc
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTS---------------VLSACAD 160 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------l~~~~~~ 160 (394)
+|...|+++.+... .+..++..+...|...|++++|+..++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998753 37889999999999999999999999999876422 2111111 1222236
Q ss_pred cchhhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 161 LSALKLGKETHGHVIRADLNK-DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
.|++++|...++++.+..... +..++..+...|...|++++|...|++.... |.++..|..+...+...|++++|+..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666777777776666554221 4566666666666666666666666664432 44555666666666666666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCC---------CCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGL---------KPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
|+++.+.. +.+...+..+...+...|++++|...++.+.+...- +....++..+..+|...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 66665543 224555666666666666666666666655432000 00134445555555555555555544
Q ss_pred HH
Q 016128 310 IR 311 (394)
Q Consensus 310 ~~ 311 (394)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-21 Score=165.96 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
..+..+...+.+.|++++|+..|+++.+.... +..+|..+..+|...|++++|+..|++..+.. +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555556666666666666666666554322 45555666666666666666666666555432 22344444455555
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
...|++++|...++++.+.... +...+..+ ......+..+...+...|++++|+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPK-YKYLVKNK-----------------------KGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH-HHCC------------------------------------------CCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCcc-chHHHhhh-----------------------ccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 5555555555555444432200 00000000 01122345567788889999999999
Q ss_pred HHHHHHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--
Q 016128 239 FDLMQQEKVK-PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE-- 315 (394)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (394)
++++.+.... ++..++..+...+...|++++|...++++.+. .+.+..++..+...|.+.|++++|...|+++.+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999886432 15788888999999999999999999998863 345678899999999999999999999998876
Q ss_pred CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC------------CCchHHHHHHHHhhcCCcccHHHHHHH
Q 016128 316 PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE------------NPTPFVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
|+.. ++..+..++...|++++|...++++.++.|. +...|..+..++...|+.+.+.++.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 6666 8999999999999999999999999998765 367799999999999999988887765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-18 Score=156.05 Aligned_cols=335 Identities=9% Similarity=-0.048 Sum_probs=282.1
Q ss_pred ChHHHHHHHHHhhh----hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHH
Q 016128 10 NSVTFISVISACAS----LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTW 81 (394)
Q Consensus 10 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 81 (394)
+...+..|-..+.. .+++++|.+.|+...+.| ++..+..|..+|.. .+++++|+..|++.....+...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566777777777 889999999999998765 66778888888988 78999999999998867788888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 016128 82 NTMIAGMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVTS 153 (394)
Q Consensus 82 ~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 153 (394)
..+...|.. .+++++|++.|++..+.| +..++..+...|.. .+++++|+..|++..+.| +...+..
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 889988887 789999999999998874 78889999999988 899999999999998875 4567777
Q ss_pred HHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHH
Q 016128 154 VLSACAD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISG 225 (394)
Q Consensus 154 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 225 (394)
+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++.... .++..+..+...
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7777765 789999999999998875 56677778888888 89999999999998764 567778888888
Q ss_pred Hhhc-----CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 226 YGRN-----GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG---HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 226 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|... +++++|+..|++..+.| +...+..+...|...| +.++|..+|+...+. .++..+..+...|
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 8887 89999999999999875 5567777888877655 789999999999874 4677888899999
Q ss_pred Hh----cCcHHHHHHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCC---CCchHHHHHHHHhh
Q 016128 298 GR----SGRLDEARELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPE---NPTPFVILSNIYAG 364 (394)
Q Consensus 298 ~~----~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 364 (394)
.. .+++++|..+|++..+.+.. .+..+...|.. .++.++|...|+++.+.+|. ++.....+..++..
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88 89999999999998875555 88889999988 89999999999999999954 66666666655543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-20 Score=153.01 Aligned_cols=269 Identities=12% Similarity=0.074 Sum_probs=196.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPD--PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+-....|++..|+..++..... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3344567777777776655443 222 23445566777777777777765533 1 34566667777777777777
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 164 LKLGKETHGHVIRADLNK-DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
.++|.+.++++...+..| +...+..+...+...|++++|.+.+++ |.++..+..++..+.+.|++++|.+.|+++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777777665333 566667777888888999999888887 578888889999999999999999999999
Q ss_pred HHcCCCCCHhhH---HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC
Q 016128 243 QQEKVKPNSASF---VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT 317 (394)
Q Consensus 243 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 317 (394)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...|++..+ |+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8864 443211 12334444568999999999999874 456788899999999999999999999999876 77
Q ss_pred hh-hHHHHHHHHHhcCCchH-HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 318 VS-VYHSLLGACWCHLNSDL-GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 318 ~~-~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
.. ++..++..+...|+.++ +.++++++.+..|.++.+.. ...+.+.++++.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~ 285 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLV 285 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHH
Confidence 77 89999999999999876 57899999999998865433 344444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=158.55 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=208.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...+..+...+.+.|++++|+..|+++.. +.+..+|..+...+...|++++|+..|+++.+... .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 455688899999999999999999999875 56788899999999999999999999999998743 368899999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPS-----------LKCVTSVLSACADLSALKLGKETHGHVIRADLN-KDESMATALI 190 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 190 (394)
|...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998742 22 223344577888999999999999999887533 2688888899
Q ss_pred HHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHH
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDK 269 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (394)
..|...|++++|...|++.... |.++.+|..+..+|...|++++|+..|+++.+.. +.+..++..+...|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999886554 6678889999999999999999999999988864 2357788888899999999999
Q ss_pred HHHHHHHchhcCCC--C--------CCHhhHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 270 ALQIFTMMDDDFGL--K--------PKQEHFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 270 a~~~~~~~~~~~~~--~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
|...++++.+...- . .+..++..+..++...|+.+.+..+.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999888753100 0 12456777777777788877777776653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=163.60 Aligned_cols=303 Identities=12% Similarity=0.070 Sum_probs=143.7
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFE 102 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 102 (394)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik---a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5577899999988872 335899999999999999999999976 3566789999999999999999999888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC
Q 016128 103 GLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD 182 (394)
Q Consensus 103 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 182 (394)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77764 4567888899999999999999888774 367779999999999999999999999976
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +..++.-...++..|.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 218 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHH
Confidence 35888999999999999999999988 3788899999999999999999655443 2234444557888899
Q ss_pred ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh--cCcHHHHHHHHHhCCC-CC-------hhhHHHHHHHHHhcC
Q 016128 263 HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR--SGRLDEARELIRELPE-PT-------VSVYHSLLGACWCHL 332 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~-~~-------~~~~~~l~~~~~~~g 332 (394)
+.|.+++|..+++..... . +-...+|+.|..+|.+ .++..+.++.|..-.. |. ...|..+...|...+
T Consensus 219 k~G~~eEai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 219 DRGYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTCHHHHHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988743 2 4456677777777765 4566677777766555 33 238888999999999
Q ss_pred CchHHHHHHHHHHhh------------CCCCCchHHHHHHHHh
Q 016128 333 NSDLGEEMAMKLQEM------------EPENPTPFVILSNIYA 363 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~ 363 (394)
+++.|....-.-... .+.|...|...+..|.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 999887654332211 3556666666666555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=166.77 Aligned_cols=281 Identities=12% Similarity=0.111 Sum_probs=138.4
Q ss_pred hcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 016128 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFE 137 (394)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 137 (394)
+.|++++|.+.++++. .| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~~-~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996 44 48999999999999999999999653 588899999999999999999999777
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChh
Q 016128 138 KMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPA 217 (394)
Q Consensus 138 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 217 (394)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|++++|..+|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------- 149 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 149 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------
Confidence 76663 4567889999999999999999988875 3677799999999999999999999999873
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
.|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ ...+.....++..|
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYY 217 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHH
Confidence 5999999999999999999999998 27899999999999999999996544432 23445566799999
Q ss_pred HhcCcHHHHHHHHHhCCCC--Chh-hHHHHHHHHHhc--CCchHHHHHHHHHHhhCC-----CCCchHHHHHHHHhhcCC
Q 016128 298 GRSGRLDEARELIRELPEP--TVS-VYHSLLGACWCH--LNSDLGEEMAMKLQEMEP-----ENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~ 367 (394)
.+.|++++|..+++....- ... .|+.+..++++- ++..+.++.|..-..+.| .+...|..++..|.+-++
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999999999999873 333 888888888765 344444454444344446 688999999999999999
Q ss_pred cccHHHHH
Q 016128 368 WEDVGRIR 375 (394)
Q Consensus 368 ~~~a~~~~ 375 (394)
++.|...+
T Consensus 298 ~d~A~~tm 305 (449)
T 1b89_A 298 YDNAIITM 305 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-20 Score=158.30 Aligned_cols=276 Identities=9% Similarity=0.001 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
..+..+...+...|++++|..+|+++.+.... +..++..+..++...|++++|...++++.+.. +.+..++..+..++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34556666677777777777777777665322 56666666777777777777777777666542 23445555555555
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHH-HH-HHhhcCChhhHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM-IS-GYGRNGEYESAV 236 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~ 236 (394)
...|++++|.+.++++.+.... +...+..+.... ++......+ .. .+...|++++|.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD--------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC----------------------------------------CCTTSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH--------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 5555666665555555544321 111111110000 000011112 22 377788899999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
..++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999887643 36788888889999999999999999988763 344577888899999999999999999998875
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC------------CCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE------------NPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
|+.. ++..+..++...|++++|.+.++++.+..|. ++..+..++.++.+.|++++|..++++..+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6555 8999999999999999999999999999988 678899999999999999999999876654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-18 Score=154.12 Aligned_cols=342 Identities=11% Similarity=0.072 Sum_probs=249.6
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016128 34 HGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKP 111 (394)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 111 (394)
++..++.. |-+...|..++. +.+.|++++|..+|+++.. +.+...|..++..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555554 668889999998 4789999999999999876 456778999999999999999999999999987 46
Q ss_pred CHHHHHHHHHHH-HccCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHhhc---------cchhhHHHHHHHHHH
Q 016128 112 DPATWNSMISGF-SQLGMRFEAFK----LFEKMQST-GMVP-SLKCVTSVLSACAD---------LSALKLGKETHGHVI 175 (394)
Q Consensus 112 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~m~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 175 (394)
+...|...+... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++.+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 888887777533 45677776655 77766543 5444 45667666665543 688889999988887
Q ss_pred HcCCCCCHHHHHHHHHH---------------------------------------------------------------
Q 016128 176 RADLNKDESMATALISM--------------------------------------------------------------- 192 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~--------------------------------------------------------------- 192 (394)
+.........|......
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 73211112222211110
Q ss_pred --HHHc----CCc----hHHHHHHHHhhcC-CCChhhHHHHHHHHhh-------cCChh-------hHHHHHHHHHHcCC
Q 016128 193 --YMKC----GQP----SWARRFFDQFEIK-PDDPAFWNAMISGYGR-------NGEYE-------SAVEIFDLMQQEKV 247 (394)
Q Consensus 193 --~~~~----g~~----~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~ 247 (394)
.... ++. +++..+|++.... |.++..|..++..+.+ .|+++ +|..+|++..+.-.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 0000 011 1344455554333 5667778777777775 68887 89999999886322
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-H-hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHH
Q 016128 248 KPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-Q-EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYH 322 (394)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~ 322 (394)
+.+...+..++..+.+.|++++|..+|+.+.+. .|+ . ..|..++..+.+.|++++|..+|++..+ |... .|.
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 335778888889999999999999999999863 443 3 4788888888899999999999999876 3322 333
Q ss_pred HHHHH-HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 323 SLLGA-CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 323 ~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
..+.. +...|+.++|..+|+++.+..|.++..+..++..+.+.|+.++|..+|++....+
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 32222 3358999999999999999999999999999999999999999999999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-19 Score=150.08 Aligned_cols=265 Identities=11% Similarity=0.010 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...+..+...+...|++++|..+|+++.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 34455566666777777777777776654 34556666677777777777777777777766532 2566777777777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HhhccchhhHHHHHHHHHHHcCCCCCHHHHHH
Q 016128 124 SQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV--------------LS-ACADLSALKLGKETHGHVIRADLNKDESMATA 188 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (394)
...|++++|+..++++.+.... +...+..+ .. .+...|++++|...++++.+... .+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 7777777777777777654211 11122221 22 37788899999999998887753 36788888
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHV 267 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (394)
+...+...|++++|...+++.... |.++..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 888889999999999988886554 5667778888888888999999999998887764 33577788888888888888
Q ss_pred HHHHHHHHHchhcCCCCC-----------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 268 DKALQIFTMMDDDFGLKP-----------KQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
++|...++.+.+. .... +...+..+..++.+.|++++|..++++..+
T Consensus 257 ~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888887653 1111 356777788888888888888888876653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=146.72 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=169.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 98 (394)
+.....|+++.|+...+........+.......+.++|...|+++.|+..++... +|+..++..+...+...++.++|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~-~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS-CHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccC-ChhHHHHHHHHHHHcCCCcHHHHH
Confidence 3445567777777776655433312223344556677777777777777665542 556666777777777777777777
Q ss_pred HHHHHHHhcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 99 ELFEGLAHEGFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 99 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.+.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7777777665444 455566666777777777777777765 345666777777777777777777777777666
Q ss_pred CCCCCHHHH---HHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhh
Q 016128 178 DLNKDESMA---TALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSAS 253 (394)
Q Consensus 178 ~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (394)
. |+.... ...+..+...|++++|..+|+++... |.++..++.+..++.+.|++++|+..|++..+.. +-+..+
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 4 332111 11223333346677777777776543 5566667777777777777777777777766653 225566
Q ss_pred HHHHHHHHHccCCHHH-HHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 016128 254 FVAVLSACGHAGHVDK-ALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (394)
+..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 6667766666676654 45666666542 333222 223344555555554433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-20 Score=173.41 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLAH---EGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 154 (394)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35799999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-------CCChhhHHHHHHHH
Q 016128 155 LSACADLSAL-KLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-------PDDPAFWNAMISGY 226 (394)
Q Consensus 155 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~~ 226 (394)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+. .+++..+++... ++...+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999984 78999999999999999999999988766654 334444444222 11233445666667
Q ss_pred hhcC
Q 016128 227 GRNG 230 (394)
Q Consensus 227 ~~~~ 230 (394)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=168.10 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG------SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNS 118 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 118 (394)
-..+|+++|++|++.|++++|.++|++|.. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988652 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 016128 119 MISGFSQLGMR-FEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKD------ESMATALIS 191 (394)
Q Consensus 119 l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 191 (394)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+ +++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 789999999999999999999998886554433 33333333 2233332 334445566
Q ss_pred HHHHcC
Q 016128 192 MYMKCG 197 (394)
Q Consensus 192 ~~~~~g 197 (394)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-18 Score=139.73 Aligned_cols=227 Identities=10% Similarity=-0.026 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGM--VPSLKCVTSVLS 156 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~ 156 (394)
..|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|+..+++..+... .|+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345555555555566666666655555554 4555555555555555555555555555543210 01100
Q ss_pred HhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHH
Q 016128 157 ACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
....++..+...+...|++++|...|++.....++. ..+...|++++|.
T Consensus 77 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 77 ------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHH
Confidence 002333334444444444444444444433322221 1233334444555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
..++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++..+
T Consensus 126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5555444431 112334444444555555555555555555432 122344455555555555555555555555443
Q ss_pred -CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 316 -PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 316 -~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
|+.. .|..+..++...|++++|...++++.+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 3333 55555566666666666666666666555
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=137.72 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC-------hhhHH
Q 016128 149 KCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD-------PAFWN 220 (394)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-------~~~~~ 220 (394)
..+..+...+...|++++|...++++.+.. .+..++..+..++...|++++|...+++.... |.+ +..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666655 45666666777777777777777777765443 111 56789
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS 300 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (394)
.+...+...|++++|+..|++..+.. |+. ..+...|++++|...++.+... .+.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHh
Confidence 99999999999999999999998863 443 3466678899999999998863 334567788899999999
Q ss_pred CcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHH
Q 016128 301 GRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQM 377 (394)
Q Consensus 301 g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 377 (394)
|++++|...+++..+ |+.. ++..+..++...|++++|+..++++.+..|.++..+..++.++.+.|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999876 6655 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 016128 378 INDRQ 382 (394)
Q Consensus 378 m~~~~ 382 (394)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=144.00 Aligned_cols=335 Identities=11% Similarity=-0.054 Sum_probs=221.4
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhc-------CCchHHHHHHHHHHHhc--CChhHHHHHHHHhcc-CC-Ch
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEK-------QSDTMIGTALVDMYLKC--GCLPCAHNVFQELKG-SR-NI 78 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~-~~-~~ 78 (394)
...+|+.+..+|...|++++|...+++..+... .....++..+..++... +++++|+..|++... .| +.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 346899999999999999999999998876421 12345666666666654 479999999999875 34 45
Q ss_pred hHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 016128 79 LTWNTMIAG---MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCV 151 (394)
Q Consensus 79 ~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (394)
..+..+... +...++.++|++.+++..+.... +..++..+...+.. .|++++|.+.+++..... +.+...+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 555555544 34567888999999988876432 56667666655544 467889999999988764 4567788
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------------------CCchHHHHHHHHhhc-
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKC-------------------GQPSWARRFFDQFEI- 211 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~- 211 (394)
..+...+...|++++|...++++.+... .+..++..+..+|... +..+.|...+++...
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999988763 3677777777666432 235667777777544
Q ss_pred CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHh--hHHHHHH-HHHccCCHHHHHHHHHHchhcCCCCCCHh
Q 016128 212 KPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSA--SFVAVLS-ACGHAGHVDKALQIFTMMDDDFGLKPKQE 288 (394)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (394)
.|.+...+..+...+...|++++|+..|++..+....+... .+..+.. .....|++++|+..|++..+ +.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccH
Confidence 36677789999999999999999999999998865443321 2223332 23567999999999999885 345543
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (394)
.... ....+.++++...+ |+.. +|..+..++...|++++|++.|+++++.+|.+|.+...++
T Consensus 407 ~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3222 22333444444433 6666 9999999999999999999999999999998888776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=133.13 Aligned_cols=198 Identities=14% Similarity=0.051 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
+++...+..+...+.+.|++++|...|++.... |.++..+..+...+.+.|++++|+..+++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 345666777888888888888888888886554 66777788888888888888888888888887642 3567777888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHH
Q 016128 259 SACGHA-----------GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLL 325 (394)
Q Consensus 259 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~ 325 (394)
..+... |++++|+..+++..+. -+.+...+..+...+...|++++|+..|++..+ .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999998863 234567888888999999999999999988765 3333888999
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.++...|++++|+..|+++.+..|.++..+..++.++.+.|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=141.80 Aligned_cols=345 Identities=9% Similarity=0.014 Sum_probs=213.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCCh---hHHHHHHHHhccCCChhHHHHHHHHHHhcC-
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCL---PCAHNVFQELKGSRNILTWNTMIAGMMLNG- 92 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~- 92 (394)
+...+.+.|++++|.++|+...+.| +...+..+..+|...|+. ++|...|++.... +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCC
Confidence 5667788999999999999998876 344455666777778888 9999999998844 7777777877566555
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 93 ----RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF---EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 93 ----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+......|. ......+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 789999999999987643 26667777777655433 34555555554443 234555566666656444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc----CChhhHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCG---QPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN----GEYESAVE 237 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~----~~~~~a~~ 237 (394)
++......+.+.-...++..+..|...|...| +.++|...|++.... +.+...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44333222222211223336677777888888 778888888876554 34444446666666554 67888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHH-H--HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC-----cHHHHHHH
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSA-C--GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG-----RLDEAREL 309 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 309 (394)
.|++.. .| +...+..+... + ...+++++|..+|++..+. | ++..+..|...|. .| ++++|..+
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 888877 33 44555556555 3 4578888888888887764 4 5666667777666 44 88888888
Q ss_pred HHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh----cCCcccHHHHHHHhhh
Q 016128 310 IRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG----LGRWEDVGRIRQMIND 380 (394)
Q Consensus 310 ~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 380 (394)
|++.. ++.. .+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..++++|..+++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88888 6666 77777766665 337888888888876643 56677777777764 3477778888887776
Q ss_pred ccc
Q 016128 381 RQL 383 (394)
Q Consensus 381 ~~~ 383 (394)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-15 Score=146.01 Aligned_cols=313 Identities=12% Similarity=0.093 Sum_probs=225.2
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 96 (394)
+...|...|.+++|.++|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHHH
Confidence 45556667777777777776421 111122222 25677788887777664 46677788888888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 016128 97 AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIR 176 (394)
Q Consensus 97 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (394)
|++.|.+. -|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.++++....+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888653 377788888888888888888888888766643 33333335788888888777544332 1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 177 ADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
.++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. .+..+|..
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 335556667888888888888888888775 35888888888888888888888876 25678888
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc--
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH-- 331 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~-- 331 (394)
+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.... +... .|+.+...+++.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 888888888888887765432 34566778899999999999999999988876 3333 777777777664
Q ss_pred CCchHHHHHHHHHHhhCC-----CCCchHHHHHHHHhhcCCcccHHHH
Q 016128 332 LNSDLGEEMAMKLQEMEP-----ENPTPFVILSNIYAGLGRWEDVGRI 374 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 374 (394)
++..++.+.|..-..+.| .+...|..++..|.+.|+++.|...
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 455555666655444444 5777899999999999999998843
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-15 Score=143.53 Aligned_cols=324 Identities=13% Similarity=0.056 Sum_probs=191.6
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHh---------------------------cCCh
Q 016128 12 VTFISVISACASLLYLQFGRQVHGLTLKIE--KQSDTMIGTALVDMYLK---------------------------CGCL 62 (394)
Q Consensus 12 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---------------------------~g~~ 62 (394)
.--...+++|...|.+.+|+++++.+.-.+ +..+...-+.++.+..+ .|.+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 334567788888999999999999888432 11233444445544433 3444
Q ss_pred hHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 63 PCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++++|++.|.+.
T Consensus 1066 EEAf~IYkKa~--~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD--VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHcC--CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 44444444432 11111111111 344455555555433 14556666666666666666666666442
Q ss_pred CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHH
Q 016128 143 GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAM 222 (394)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 222 (394)
-|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+. . .++...|..+
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-GPNNAHIQQV 1201 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-CCCHHHHHHH
Confidence 245556666666666666666666666655543 22222334666666666665433332 1 2344445556
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc
Q 016128 223 ISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR 302 (394)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (394)
...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|...|+
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhH
Confidence 66666667777777666663 256666666666677776666666552 34566666666666677
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc--CCcccHHHHHH
Q 016128 303 LDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL--GRWEDVGRIRQ 376 (394)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 376 (394)
+..|......+. .+...+..++..|.+.|.+++|+.+++....++|.+...|..++.++.+- ++..++.++|.
T Consensus 1266 f~LA~~cgl~Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1266 FRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHhhh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 766666655432 22235557777888888899999999888888888888887777777753 34444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-17 Score=134.17 Aligned_cols=242 Identities=10% Similarity=-0.071 Sum_probs=170.2
Q ss_pred ccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 125 QLGMRFEAFKLFEKMQSTGM---VPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
..|++++|+..|+++.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34566666666666665421 1134455666666666677777777777666654 2356777777778888888888
Q ss_pred HHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 202 ARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 202 a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
|...|++.... |.++..+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888776553 5567778888888888888888888888888753 44444444445556678899999998777663
Q ss_pred CCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C----Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 281 FGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P----TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.+++...+ .++..+...++.++|...+++... | +.. ++..+..++...|++++|...++++.+..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23333333 467777788888899999988877 2 223 8888999999999999999999999999887754
Q ss_pred hHHHHHHHHhhcCCcccHHHHH
Q 016128 354 PFVILSNIYAGLGRWEDVGRIR 375 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~ 375 (394)
. ...++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 366777888888888766
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-17 Score=134.16 Aligned_cols=246 Identities=13% Similarity=0.038 Sum_probs=130.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHh
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP--SLKCVTSVLSAC 158 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~ 158 (394)
+......+...|++++|+..|++..+.... +...+..+..+|...|++++|+..+++..+.+..| ....|..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444556666667777777777766665322 34466666666666677777776666666532111 122345555555
Q ss_pred hccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHH
Q 016128 159 ADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (394)
...|++++|...+++..+... .+..++..+...|...|++++|...|++.... |.++..|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 23344444555555555555555555544332 3333444444412222234444444
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCC
Q 016128 238 IFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGR---LDEARELIRELP 314 (394)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 314 (394)
.|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 164 ~~~~a~~~~-------------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLELK-------------------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHS-------------------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHhC-------------------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 444444432 1223333344444444443 333333333332
Q ss_pred C-----CC-----h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 315 E-----PT-----V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 315 ~-----~~-----~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
+ |+ . .+|..+...+...|++++|.+.++++.+.+|.++.+...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 2 21 1 26777888888899999999999999999998888877776655543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=127.50 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=108.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
|++...+..+...+.+.|++++|+..|++... +.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 34455555555556666666666666665543 334455555556666666666666666665554322 455555556
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHH
Q 016128 121 SGFSQL-----------GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATAL 189 (394)
Q Consensus 121 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 189 (394)
..+... |++++|+..|++..+.. +-+...+..+..++...|++++|...+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666665 66666666666666542 2245556666666666666666666666666665 456666666
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
..+|...|++++|...|++.... |.++..+..+...+...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 67777777777777777665443 5556666667777777777777777666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-16 Score=134.13 Aligned_cols=245 Identities=12% Similarity=0.079 Sum_probs=132.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA-LKLGKETHGHVIRADLNKDESMATALISMY 193 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (394)
+|..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++++++... .+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 34444444555555555555555554432 2234444444555555553 5555555555554432 2445555555555
Q ss_pred HHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cCCHHHH-
Q 016128 194 MKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH-AGHVDKA- 270 (394)
Q Consensus 194 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 270 (394)
...|++++|+..|+++... |.+...|..+..++...|++++|+..++++.+.... +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHH
Confidence 5555555555555554332 445555555555566666666666666665554322 44555555555555 3333444
Q ss_pred ----HHHHHHchhcCCCCCCHhhHHHHHHHHHhcC--cHHHHHHHHHhCCC-CChh-hHHHHHHHHHhcC--------C-
Q 016128 271 ----LQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG--RLDEARELIRELPE-PTVS-VYHSLLGACWCHL--------N- 333 (394)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~-~~~~-~~~~l~~~~~~~g--------~- 333 (394)
+..++..... -+-+...|..+...+...| ++++|.+.++++.. |+.. .+..++.++.+.| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 3555555432 1223455566666666655 46666666666521 4444 6666666666653 2
Q ss_pred chHHHHHHHHH-HhhCCCCCchHHHHHHHHhh
Q 016128 334 SDLGEEMAMKL-QEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 334 ~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 364 (394)
.++|+++++++ .+.+|.....|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 47777888887 77777777777777665553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-15 Score=123.71 Aligned_cols=226 Identities=13% Similarity=0.001 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD----LSALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
++.++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677778888888888888888888887732 45566777777777 888888888888887765 667777
Q ss_pred HHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 188 ALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR----NGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 188 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
.+...|.. .+++++|...|++.... .++..+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 77777777 78888888888776654 366667777777777 778888888887777754 4556666666
Q ss_pred HHHc----cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHhCCCCChh-hHHHHHHHHHh
Q 016128 260 ACGH----AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR----SGRLDEARELIRELPEPTVS-VYHSLLGACWC 330 (394)
Q Consensus 260 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~ 330 (394)
.+.. .+++++|...++...+. + ++..+..+...|.. .+++++|...|++..+.+.. .+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7766 77777777777777654 2 45566666677777 77777777777766553333 66666666666
Q ss_pred ----cCCchHHHHHHHHHHhhCCCC
Q 016128 331 ----HLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 331 ----~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 677777777777777776643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-16 Score=128.37 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=176.0
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhh----HHHHHHHH
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAF----WNAMISGY 226 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~l~~~~ 226 (394)
+......+...|++++|...++++.+... .+...+..+..+|...|++++|...+++....+.++.. |..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34445556666666666666666665542 23446666777888888888888888887665444333 78888899
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888643 36678889999999999999999999998863 344566777777344445699999
Q ss_pred HHHHHhCCC--CChh-hHHHHHHHHHhcCC---chHHHHHHHHHHhhC---CCC-----CchHHHHHHHHhhcCCcccHH
Q 016128 307 RELIRELPE--PTVS-VYHSLLGACWCHLN---SDLGEEMAMKLQEME---PEN-----PTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 307 ~~~~~~~~~--~~~~-~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~a~ 372 (394)
...|+++.+ |+.. .+..+..++...|+ +++|...++++.+.. |.. ..++..++..|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999887 6655 88888888888888 889999999999875 332 257888999999999999999
Q ss_pred HHHHHhhhcc
Q 016128 373 RIRQMINDRQ 382 (394)
Q Consensus 373 ~~~~~m~~~~ 382 (394)
..++++.+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=125.01 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=89.5
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcC
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNG 230 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 230 (394)
..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++... |.+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333333444444444444444443332 123344444444444444444444444443322 233444444444455555
Q ss_pred ChhhHHHHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555444421122 2334444444455555555555555554432 122344444455555555555555555
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
++++.+ |+.. .+..+...+...|+.++|.+.++++.+..|.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 554433 3222 444455555555555555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=129.67 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=113.0
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhh
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGR 228 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~ 228 (394)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.... +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 33344444444455555555555444432 223445555555555555555555555554332 3445555666666666
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 016128 229 NGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARE 308 (394)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 308 (394)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|..
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665543 224555666666666666666666666666542 23345556666666666666666666
Q ss_pred HHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 309 LIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 309 ~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
.++++.+ |+.. ++..+..++...|++++|...++++.+..|.++..+..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666554 4434 667777777777777777777777777777766666555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-15 Score=125.90 Aligned_cols=198 Identities=10% Similarity=0.003 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
...+..+...+...|++++|...|+++... |.+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 566788889999999999999999987654 66788899999999999999999999999988743 3678889999999
Q ss_pred HccCCHHHHHHHHHHchhcCCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
...|++++|..+++.+.+. +..| +...+..+...+...|++++|...+++..+ |+.. .+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3445 456788899999999999999999999876 5555 899999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 338 EEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
...++++.+..|.++..+..++..+...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=128.38 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
.....+..+...+...|++++|...|+++... |.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 35567777888999999999999999998765 6678889999999999999999999999998874 337788899999
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchH
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDL 336 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~ 336 (394)
.+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++.+ |+.. .+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 345678889999999999999999999999876 5555 89999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 337 GEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
|...++++.+..|.++.++..++.++.+.|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-14 Score=118.42 Aligned_cols=224 Identities=9% Similarity=-0.069 Sum_probs=128.3
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTWNTMI 85 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ll 85 (394)
+..++..+...+...|++++|.+.|+...+ +.+...+..+...|.. .+++++|...|++.....+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344555555566666666666666666655 2234555556666666 666666666666655444555566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 016128 86 AGMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA 157 (394)
Q Consensus 86 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 157 (394)
..|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666 666666666666665543 55556666666665 666666666666665543 33444455555
Q ss_pred hhc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh-
Q 016128 158 CAD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR- 228 (394)
Q Consensus 158 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~- 228 (394)
+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..... ++..+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 554 556666666666655543 34455555555555 566666666665554432 24445555555555
Q ss_pred ---cCChhhHHHHHHHHHHcC
Q 016128 229 ---NGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 229 ---~~~~~~a~~~~~~~~~~~ 246 (394)
.+++++|.+.|++..+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 556666666666555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-16 Score=128.22 Aligned_cols=116 Identities=11% Similarity=-0.110 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHhccC------CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 016128 60 GCLPCAHNVFQELKGS------RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAF 133 (394)
Q Consensus 60 g~~~~A~~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 133 (394)
|++++|+..|+++... .+..+|..+...+...|++++|...|++..+.... +..+|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555554431 12334445555555555555555555555544221 3445555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 134 KLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
..|++..+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555554432 123344444444455555555555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-14 Score=126.39 Aligned_cols=226 Identities=9% Similarity=0.094 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGR-SEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
..|..+..++.+.|++++|+..|+++.. +.+...|+.+..++...|+ +++|+..|++..+.... +...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4555566666666666666666666554 3345556666666666664 66666666666665333 556666666666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCchHH
Q 016128 124 SQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK-CGQPSWA 202 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a 202 (394)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|...++++++.+. .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 66666666666666666543 22455566666666666666666666666665542 245555556666655 3443555
Q ss_pred -----HHHHHHhhc-CCCChhhHHHHHHHHhhcC--ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC---------
Q 016128 203 -----RRFFDQFEI-KPDDPAFWNAMISGYGRNG--EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG--------- 265 (394)
Q Consensus 203 -----~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 265 (394)
+..|++... .|.+...|+.+...+...| ++++|++.+.++ +. ...+...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 244444322 2445555555555555555 455555555555 22 1223444555555555442
Q ss_pred CHHHHHHHHHHc
Q 016128 266 HVDKALQIFTMM 277 (394)
Q Consensus 266 ~~~~a~~~~~~~ 277 (394)
..++|.++++.+
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 135555555555
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-15 Score=120.23 Aligned_cols=168 Identities=13% Similarity=-0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc-CChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHH
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN-GEYESAVEIFDLMQQEKVKPN-SASFVAVLSAC 261 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 261 (394)
.+..+...+...|++++|...+++.... |.+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 3333444444444444444444443222 23334444444444444 555555555544444111121 23444444444
Q ss_pred HccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C-Chh-hHHHHHHHHHhcCCchHH
Q 016128 262 GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--P-TVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~a 337 (394)
...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++.+ | +.. .+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 5555555555555544432 122234444444455555555555555544443 3 333 444444444555555555
Q ss_pred HHHHHHHHhhCCCCCch
Q 016128 338 EEMAMKLQEMEPENPTP 354 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~ 354 (394)
..+++.+.+..|.++..
T Consensus 202 ~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 55555555555544433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-16 Score=137.16 Aligned_cols=346 Identities=8% Similarity=-0.025 Sum_probs=236.3
Q ss_pred HHHHhhhhHhH---HHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC-----ChhHHHHHHHHhccCCChhHHHHHHHHH
Q 016128 17 VISACASLLYL---QFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG-----CLPCAHNVFQELKGSRNILTWNTMIAGM 88 (394)
Q Consensus 17 ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~ll~~~ 88 (394)
|-..+...|+. ++|.+.|+...+. ++..+..+..++...+ +.++|...|++.....+...+..|...|
T Consensus 41 Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 116 (452)
T 3e4b_A 41 LADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLY 116 (452)
T ss_dssp CC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444556777 8999999988854 5555666776555555 7889999999987665666888888888
Q ss_pred HhcCCHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc---
Q 016128 89 MLNGRSEK---AMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS--- 162 (394)
Q Consensus 89 ~~~~~~~~---a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--- 162 (394)
...+..++ +.+.+......| ++..+..+...|...+.++++......+.+.-...++..+..+...|...|
T Consensus 117 ~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 117 LQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPE 193 (452)
T ss_dssp HHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 87765444 445555555444 455677788888888866555554333322211222337778888888888
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCchHHHHHHHHhhcCCCChhhHHHHHHH-H--hhcCChhhH
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKC----GQPSWARRFFDQFEIKPDDPAFWNAMISG-Y--GRNGEYESA 235 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a 235 (394)
+.++|.+.|++..+.| .++...+..|...|... +++++|...|++.. +.++..+..|... + ...+++++|
T Consensus 194 ~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 9999999999999988 44666656677777655 68999999999988 6788888888887 4 568999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccC-----CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh----cCcHHHH
Q 016128 236 VEIFDLMQQEKVKPNSASFVAVLSACGHAG-----HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR----SGRLDEA 306 (394)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 306 (394)
+..|++..+.| +...+..+...|. .| ++++|..+|+... .-++.....|...|.. ..++++|
T Consensus 271 ~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A 341 (452)
T 3e4b_A 271 MKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKA 341 (452)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 99999999876 6777778887776 45 9999999999886 2356777778777776 4499999
Q ss_pred HHHHHhCCCCChh-hHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 307 RELIRELPEPTVS-VYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..+|++..+++.. ....|...|.. ..+.++|..+|+++.+.+++........+......++..+|.++.++..+.
T Consensus 342 ~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 342 LDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999886555 77788887764 458999999999999988654443433444444556777888888776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=116.26 Aligned_cols=198 Identities=15% Similarity=0.047 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...+..+...+...|++++|...|+++.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 34444555555555555555555554433 23344455555555555555555555555554421 1444555555555
Q ss_pred Hcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH
Q 016128 124 SQL-GMRFEAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW 201 (394)
Q Consensus 124 ~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 201 (394)
... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555554211222 3444555555555555555555555555543 2235555556666666666666
Q ss_pred HHHHHHHhhcC-C-CChhhHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 202 ARRFFDQFEIK-P-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 202 a~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
|...+++.... | .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666654433 3 44555555555566666666666666665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=138.05 Aligned_cols=298 Identities=11% Similarity=-0.015 Sum_probs=163.8
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-C
Q 016128 44 SDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-N----ILTWNTMIAGMMLNGRSEKAMELFEGLAHE----GFKP-D 112 (394)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 112 (394)
.....+......+...|++++|+..|++... .| + ...|..+...+...|++++|...+++.... +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566667777777777777777777654 22 2 245666777777777777777777765442 1111 2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccch--------------------hhHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPS----LKCVTSVLSACADLSA--------------------LKLG 167 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 167 (394)
..++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566667777777777777777776654210 011 2345555555666666 5555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV 247 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (394)
...+++..+. +......+....++..+...+...|++++|+..+++..+...
T Consensus 167 ~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555443321 000000011122345555555555555555555555443210
Q ss_pred -CCC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---
Q 016128 248 -KPN----SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE--- 315 (394)
Q Consensus 248 -~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 315 (394)
.++ ..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++..+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 011 124555555566666666666666555431000011 33455566666666666666666665543
Q ss_pred --CC----hhhHHHHHHHHHhcCCchHHHHHHHHHHhhC------CCCCchHHHHHHHHhhcCCcc
Q 016128 316 --PT----VSVYHSLLGACWCHLNSDLGEEMAMKLQEME------PENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 316 --~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~ 369 (394)
++ ..++..+...+...|++++|...++++.++. +....++..++.++...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11 1166667777777777777777777777653 222345666777777766653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=138.68 Aligned_cols=269 Identities=10% Similarity=0.013 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHH
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDP----ATWNSMISGFSQLGMRFEAFKLFEKMQST----GM-VPSLK 149 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 149 (394)
..+..+...+...|++++|+..|++..+.+.. +. .++..+...|...|++++|+..+++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555667788889999999999888886332 33 46778888888889999998888887643 11 12334
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC-----------------chHHHHHHH
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRAD-----LNKDESMATALISMYMKCGQ-----------------PSWARRFFD 207 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~ 207 (394)
.+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56667777777788888877777765431 11123455566666666666 666666655
Q ss_pred HhhcC-------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 208 QFEIK-------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK-PN----SASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 208 ~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
+.... +.....+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 53221 111223555555566666666666666655443110 01 1144455555555555555555555
Q ss_pred HchhcCCCCC----CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CC---hh-hHHHHHHHHHhcCCchHHHHHHH
Q 016128 276 MMDDDFGLKP----KQEHFGCMVDLLGRSGRLDEARELIRELPE-----PT---VS-VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 276 ~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~-~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
+......-.. ...++..+...|...|++++|...+++... ++ .. ++..+..++...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5443200000 023344444455555555555555544432 11 01 34444444444555555555555
Q ss_pred HHHhhC
Q 016128 343 KLQEME 348 (394)
Q Consensus 343 ~~~~~~ 348 (394)
++.++.
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=129.96 Aligned_cols=236 Identities=11% Similarity=0.037 Sum_probs=155.7
Q ss_pred CCCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHhcCChhHHHHHHHHhcc----C---
Q 016128 7 DEPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSD----TMIGTALVDMYLKCGCLPCAHNVFQELKG----S--- 75 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~--- 75 (394)
..+....+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++... .
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 35566777888888999999999999999999875 333 35788899999999999999999988643 1
Q ss_pred -CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHccCC--------------------H
Q 016128 76 -RNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF-KPD----PATWNSMISGFSQLGM--------------------R 129 (394)
Q Consensus 76 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~--------------------~ 129 (394)
....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1245688888999999999999999998776411 012 4478888999999999 8
Q ss_pred HHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCc
Q 016128 130 FEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLN-KD----ESMATALISMYMKCGQP 199 (394)
Q Consensus 130 ~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~ 199 (394)
++|+..+++..+. +..| ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9998888876532 1111 1234556666666777777777776665543110 11 12444555555555555
Q ss_pred hHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 200 SWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 200 ~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
++|...+++.... ..+ ..++..+...+...|++++|...+++..
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555555543221 001 2234444455555555555555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-15 Score=115.96 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=99.9
Q ss_pred ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHH
Q 016128 215 DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMV 294 (394)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 294 (394)
++..|..+...|.+.|++++|++.|++..+... -+..++..+...+...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 444555666666666666666666666555432 24455555666666666666666666655542 223344555555
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccH
Q 016128 295 DLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDV 371 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 371 (394)
..+...++++.|...+.+... |+.. .+..+..++...|++++|++.|+++.+.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 556666666666666665544 4444 6666666666677777777777777777777767777777777777777777
Q ss_pred HHHHHHhhhc
Q 016128 372 GRIRQMINDR 381 (394)
Q Consensus 372 ~~~~~~m~~~ 381 (394)
++.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777666553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-16 Score=131.89 Aligned_cols=275 Identities=12% Similarity=0.067 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 016128 80 TWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD----PATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKC 150 (394)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~ 150 (394)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|+..+++..+. +..| ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556677778888888888887776322 2 356677777777888888888877776432 1111 1334
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC-------------chHHHHHHHHhhcC
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLN-KD----ESMATALISMYMKCGQ-------------PSWARRFFDQFEIK 212 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~ 212 (394)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 555555566666666666666655432110 11 2234444444444444 0000000
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE----KVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK- 286 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 286 (394)
+++|...+++.... +..+ ...++..+...+...|++++|...++...+...-.++
T Consensus 159 -------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 159 -------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 44444444433221 1000 1234455555555666666666666555432000011
Q ss_pred ---HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CC----hhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---
Q 016128 287 ---QEHFGCMVDLLGRSGRLDEARELIRELPE-----PT----VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--- 351 (394)
Q Consensus 287 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 351 (394)
..++..+...+...|++++|...+++... ++ ..++..+...+...|++++|...++++.+..+..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 22455566666666676666666665543 11 1266667777777788888887777777654322
Q ss_pred ---CchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 352 ---PTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 352 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
..++..++.++.+.|++++|...++++.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 236677777888888888888888877653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=133.56 Aligned_cols=270 Identities=10% Similarity=-0.020 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-I----LTWNTMIAGMMLNGRSEKAMELFEGLAHE----GF-KPDPA 114 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ 114 (394)
...+..+...+...|++++|+..|++... .|+ . ..|..+...+...|++++|...+++..+. +. .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555677788889999999999998765 333 2 46788888899999999999999987653 11 12356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHhhccch-----------------hhHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQST----GM-VPSLKCVTSVLSACADLSA-----------------LKLGKETHG 172 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 172 (394)
++..+...|...|++++|+..+++..+. +- .....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999999887653 11 1234467788888889999 899998888
Q ss_pred HHHHcC----C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-C--CC----hhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 173 HVIRAD----L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK-P--DD----PAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 173 ~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
+..+.. . .....++..+...|...|++++|...+++.... + .+ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 875431 1 112356777888899999999999999886543 1 11 1257888889999999999999998
Q ss_pred HHHHcCCC-C----CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC----CHhhHHHHHHHHHhcCcHHHHHHHHH
Q 016128 241 LMQQEKVK-P----NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP----KQEHFGCMVDLLGRSGRLDEARELIR 311 (394)
Q Consensus 241 ~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (394)
+..+.... . ...++..+...+...|++++|...+++......-.. ...++..+...|.+.|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87654211 1 145677888889999999999999988765311111 13467778889999999999999988
Q ss_pred hCCC
Q 016128 312 ELPE 315 (394)
Q Consensus 312 ~~~~ 315 (394)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=127.22 Aligned_cols=229 Identities=9% Similarity=-0.006 Sum_probs=132.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC------CCHHHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLN------KDESMATA 188 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 188 (394)
...+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+.... ....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34444555555555555555432 1011 1234445555555555555555555554432110 01345556
Q ss_pred HHHHHHHcCCchHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CCCHhhHHH
Q 016128 189 LISMYMKCGQPSWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQE----KV-KPNSASFVA 256 (394)
Q Consensus 189 l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 256 (394)
+...|...|++++|...|++.... ..+ ..++..+...|...|++++|+..+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666677777777777776664322 111 124667777777788888888777776652 22 223456777
Q ss_pred HHHHHHccCCHHHHHHHHHHchhcC---CCCCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCCC-CChh-hHHHHHHHH
Q 016128 257 VLSACGHAGHVDKALQIFTMMDDDF---GLKPKQEHFGCMVDLLGRSGR---LDEARELIRELPE-PTVS-VYHSLLGAC 328 (394)
Q Consensus 257 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~-~~~~l~~~~ 328 (394)
+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++... |+.. .+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7777777888888887777665421 111112234556666777777 7777777777755 3333 666777777
Q ss_pred HhcCCchHHHHHHHHHHhhC
Q 016128 329 WCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~ 348 (394)
...|++++|...++++.++.
T Consensus 350 ~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 77788888877777776644
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=136.20 Aligned_cols=210 Identities=10% Similarity=-0.013 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCc-hHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHH
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYMKCGQP-SWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDL 241 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (394)
++++...++...... +.+...+..+...+...|++ ++|...|++.... |.+...|..+..+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444455555444332 23566677777777777777 7777777775443 55667777777888888888888888887
Q ss_pred HHHcCCCCCHhhHHHHHHHHHcc---------CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc--------CcHH
Q 016128 242 MQQEKVKPNSASFVAVLSACGHA---------GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS--------GRLD 304 (394)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 304 (394)
..+. .|+...+..+...+... |++++|...+++..+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7765 35567777777777777 8888888888887753 234567777788888777 8888
Q ss_pred HHHHHHHhCCC--C---Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 305 EARELIRELPE--P---TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 305 ~a~~~~~~~~~--~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+|...|++..+ | +.. .|..+..++...|++++|.+.|+++.+.+|.++.++..+..++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888775 5 455 88888889999999999999999999999988888899999998888888888654433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-12 Score=121.09 Aligned_cols=371 Identities=7% Similarity=-0.022 Sum_probs=212.1
Q ss_pred CCChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC---hhHHHHHHHHhcc-C---CChhH
Q 016128 8 EPNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC---LPCAHNVFQELKG-S---RNILT 80 (394)
Q Consensus 8 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~---~~~~~ 80 (394)
+-|..+|..++..+.+.+.++.+..+|+.++..- |.+...|...+..-.+.|. ++.+..+|++... - |++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3478899999999999999999999999999774 7888999999999999998 9999999999876 3 88888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHHHHHhc-CC-CC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRS--------EKAMELFEGLAHE-GF-KP-DPATWNSMISGFSQ---------LGMRFEAFKLFEKMQ 140 (394)
Q Consensus 81 ~~~ll~~~~~~~~~--------~~a~~~~~~m~~~-g~-~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~ 140 (394)
|...+....+.++. +.+.++|+..... |. .| +...|...+..... +++.+.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665543 3445788876653 66 55 45678777765442 345677888888877
Q ss_pred hCCCCCCHHHHHH---HHHHhhc----------cchhhHHHHH-------------------------------------
Q 016128 141 STGMVPSLKCVTS---VLSACAD----------LSALKLGKET------------------------------------- 170 (394)
Q Consensus 141 ~~~~~~~~~~~~~---l~~~~~~----------~~~~~~a~~~------------------------------------- 170 (394)
......-..+|.. .-..... ..+++.|...
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5311111122211 1111000 0111222222
Q ss_pred ------------------------------HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHH-HHHHHhhcC-CCChhh
Q 016128 171 ------------------------------HGHVIRADLNKDESMATALISMYMKCGQPSWAR-RFFDQFEIK-PDDPAF 218 (394)
Q Consensus 171 ------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~-~~~~~~ 218 (394)
|++.+... +....+|...+..+...|+.++|. .+|++.... |.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22222221 113333344444444555555664 666554433 344444
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCC---------CCC------------HhhHHHHHHHHHccCCHHHHHHHHHHc
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKV---------KPN------------SASFVAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
|-.++....+.|+++.|.++|+++.+... .|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555556666666666666666554210 121 124555555555556666666666666
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhc-CcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC---
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGRS-GRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--- 350 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 350 (394)
.+. ........|...+..-.+. ++.+.|..+|+...+ |+.. .|...+......|+.+.|..+|+++....|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 542 0111222232222222222 335666666666655 4444 5555555555566666666666666665542
Q ss_pred CCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 351 NPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
....|..++....+.|+.+.+..+.+++.+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2344555555555666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=127.04 Aligned_cols=276 Identities=10% Similarity=-0.023 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc-CC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG-SR-N----ILTWNTMIAGMMLNGRSEKAMELFEGLAHE----GFKP-DPA 114 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 114 (394)
...+......+...|++++|+..|++... .| + ...+..+...+...|++++|.+.+++.... +..| ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556677888999999999999999765 33 3 356888899999999999999999987653 2222 356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccch--------------------hhHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPS----LKCVTSVLSACADLSA--------------------LKLGKE 169 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 169 (394)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999999765311 122 3367788888888899 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-C
Q 016128 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-K 248 (394)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~ 248 (394)
.+++..+. .+.....+.....+..+...+...|++++|...+++..+... .
T Consensus 165 ~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 77665432 111111001122334444444445555555555544432100 0
Q ss_pred C----CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----
Q 016128 249 P----NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----- 315 (394)
Q Consensus 249 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 315 (394)
+ ...++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++...
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0 1124455555555666666666655554431000111 33455566666667777777666665543
Q ss_pred CC---hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 016128 316 PT---VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEP 349 (394)
Q Consensus 316 ~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (394)
.+ .. ++..+...+...|++++|...++++.++.+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 11 12 666777778888888888888888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=112.56 Aligned_cols=167 Identities=14% Similarity=0.012 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhc-CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEI-KPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSA 260 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 260 (394)
+..+|..+...|...|++++|...|++... .|.++..|..+..+|.+.|++++|+..+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 567888888888888999999998888654 367788888888899999999999999988877643 356677777888
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++..+ |+.. +|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88889999999998888763 345677888888899999999999999988876 6666 899999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 016128 338 EEMAMKLQEMEPEN 351 (394)
Q Consensus 338 ~~~~~~~~~~~~~~ 351 (394)
++.|+++.+.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999988865
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-15 Score=128.51 Aligned_cols=227 Identities=8% Similarity=-0.005 Sum_probs=175.2
Q ss_pred HHHHhhccchhhHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CC-----ChhhHH
Q 016128 154 VLSACADLSALKLGKETHGHVIRADL-NK----DESMATALISMYMKCGQPSWARRFFDQFEIK---PD-----DPAFWN 220 (394)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-----~~~~~~ 220 (394)
....+...|++++|...+++..+.-. .+ ...++..+...|...|++++|...+++.... .. ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667889999999999999876411 12 3467888999999999999999999885432 11 234588
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcC---CC-CCCHhhHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVK-PN----SASFVAVLSACGHAGHVDKALQIFTMMDDDF---GL-KPKQEHFG 291 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 291 (394)
.+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653111 12 2478889999999999999999999887510 12 33356788
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC-----CChh---hHHHHHHHHHhcCC---chHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE-----PTVS---VYHSLLGACWCHLN---SDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
.+...|.+.|++++|...+++..+ .+.. .+..+...+...|+ .++|+.++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 899999999999999999998765 2222 45678888888898 77777777765 222445567888999
Q ss_pred HHhhcCCcccHHHHHHHhhhc
Q 016128 361 IYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.|.+.|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-13 Score=114.03 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-------cchh-------hHHHHH
Q 016128 113 PATWNSMISGFSQL----GMR----FEAFKLFEKMQSTGMVPSLKCVTSVLSACAD-------LSAL-------KLGKET 170 (394)
Q Consensus 113 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 170 (394)
...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666654443 233 57777888877652 3456667766666643 3554 778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC-Chh-hHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 016128 171 HGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPD-DPA-FWNAMISGYGRNGEYESAVEIFDLMQQEKVK 248 (394)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (394)
+++.++.-.+.+...+..++..+.+.|++++|..+|++....+| ++. .|..++..+.+.|++++|..+|++..+...
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 88777731133566777777777788888888888887766533 344 677777777778888888888888776532
Q ss_pred CCHhhHHHHHHHHH-ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----C-C-hh-h
Q 016128 249 PNSASFVAVLSACG-HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE----P-T-VS-V 320 (394)
Q Consensus 249 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~-~~-~ 320 (394)
++...|...+.... ..|+.++|..+|+...+. .+.+...+..++..+.+.|++++|..+|++... + + .. .
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 23344433332221 257888888888777653 234566777777777778888888888777754 2 1 22 6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
|..++..+...|+.+.|..+++++.+..|.++..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 7777777777788888888888888777765533
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-13 Score=112.26 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=175.4
Q ss_pred ChhHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHH
Q 016128 77 NILTWNTMIAGMMLN----GRS----EKAMELFEGLAHEGFKPDPATWNSMISGFSQ-------LGMR-------FEAFK 134 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~ 134 (394)
+...|...+....+. ++. ++|..+|++..... +-++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345577777765554 233 67888888888763 2367788888877753 4775 88999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHhhcC-
Q 016128 135 LFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDES-MATALISMYMKCGQPSWARRFFDQFEIK- 212 (394)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 212 (394)
+|++..+.-.+-+...|..++..+...|++++|..+|+++++.... +.. +|..++..+.+.|++++|..+|++....
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9998887312335567888888888889999999999998875432 333 7888888888889999999999887765
Q ss_pred CCChhhHHHHHHHHh-hcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC--CHhh
Q 016128 213 PDDPAFWNAMISGYG-RNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP--KQEH 289 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 289 (394)
|.+...|...+.... ..|++++|..+|++..+.. +-+...+..++..+...|++++|..+|+.......++| ....
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 444445544433322 3689999999999887763 23677788888888888999999999998887422354 3567
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS 319 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~ 319 (394)
|..++..+.+.|+.++|..+++++.+ |+..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 88888888888999999988888765 5543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-14 Score=125.65 Aligned_cols=215 Identities=11% Similarity=0.002 Sum_probs=182.3
Q ss_pred CChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 016128 60 GCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS-EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF 136 (394)
Q Consensus 60 g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 136 (394)
+.+++++..+++... +.+...+..+...+...|++ ++|++.|++..+.... +..+|..+..+|...|++++|+..|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456778888877654 34677888889999999999 9999999999887433 6889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhcc---------chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCc
Q 016128 137 EKMQSTGMVPSLKCVTSVLSACADL---------SALKLGKETHGHVIRADLNKDESMATALISMYMKC--------GQP 199 (394)
Q Consensus 137 ~~m~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 199 (394)
++..+. .|+...+..+..++... |++++|.+.+++..+... .+...+..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999876 46778888999999999 999999999999988763 4688888999999988 999
Q ss_pred hHHHHHHHHhhcC-C---CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 016128 200 SWARRFFDQFEIK-P---DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFT 275 (394)
Q Consensus 200 ~~a~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 275 (394)
++|...|++.... | .++..|..+..+|...|++++|+..|++..+... .+...+..+...+...|++++|...+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999997664 5 5788899999999999999999999999988743 356778888899999999999998777
Q ss_pred Hchh
Q 016128 276 MMDD 279 (394)
Q Consensus 276 ~~~~ 279 (394)
.+..
T Consensus 317 ~~~~ 320 (474)
T 4abn_A 317 KTKP 320 (474)
T ss_dssp TCCH
T ss_pred cccC
Confidence 6643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=127.28 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc------C
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQST-------GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA------D 178 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 178 (394)
+..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567778888888888888888888887752 22333456667777777778888888777776654 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc---
Q 016128 179 L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK---------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE--- 245 (394)
Q Consensus 179 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 245 (394)
. .....++..+...|...|++++|...+++.... +.....+..+...+...|++++|++.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123455566666677777777777766664332 112333556666666666666666666666543
Q ss_pred ---CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHchhcC------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 246 ---KVKP-NSASFVAVLSACGHAGHVDKALQIFTMMDDDF------GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 246 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
+..| ...++..+...+...|++++|...++++.+.. ...+..........
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------------------- 245 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE-------------------- 245 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH--------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH--------------------
Confidence 1111 22345555666666666666666666655310 00000000000000
Q ss_pred CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 316 PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 316 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+..+...+...+.+.++...++.+....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 246 ----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 246 ----EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111222233344444555555555555555555566666666666666666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=132.14 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=132.7
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.+...|+.|...|.+.|++++|++.|++..+... -+..++..+..+|.+.|++++|+..|++..+. -+-+...|..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 44566678888888888888888888888877642 25677788888888888888888888887753 2334677888
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (394)
+..+|.+.|++++|++.|++..+ |+.. .|..+..++...|++++|++.|+++.+++|.++.++..++.++...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888888765 6666 88888889999999999999999999999999899999999999999999
Q ss_pred cHHHHHHHhhh
Q 016128 370 DVGRIRQMIND 380 (394)
Q Consensus 370 ~a~~~~~~m~~ 380 (394)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-13 Score=116.02 Aligned_cols=224 Identities=12% Similarity=0.014 Sum_probs=121.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC------CCHHHHHHHHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGM-VPS----LKCVTSVLSACADLSALKLGKETHGHVIRADLN------KDESMATALIS 191 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~ 191 (394)
+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+++..+.... ....+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3444555555555555443200 011 223444444455555555555554444332100 01334455566
Q ss_pred HHHHcCCchHHHHHHHHhhcC---CC----ChhhHHHHHHHHhhcCChhhHHHHHHHHHH-----cCCCCCHhhHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK---PD----DPAFWNAMISGYGRNGEYESAVEIFDLMQQ-----EKVKPNSASFVAVLS 259 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~ 259 (394)
+|...|++++|...|++.... .. ...++..+..+|...|++++|+..+++..+ .. +....++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHH
Confidence 666666666666666553321 01 123356666777777777777777776655 22 222556666777
Q ss_pred HHHccCCHHHHHHHHHHchhcCCC---CCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCCC-CChh-hHHHHHHHHHhc
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGL---KPKQEHFGCMVDLLGRSGR---LDEARELIRELPE-PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~-~~~~l~~~~~~~ 331 (394)
.+...|++++|...+++..+...- +.....+..+...+...|+ +.+|...+++... ++.. .+..+...|...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 777777777777777766543111 1112334445555566666 6777777776554 3333 566677777777
Q ss_pred CCchHHHHHHHHHHhh
Q 016128 332 LNSDLGEEMAMKLQEM 347 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~ 347 (394)
|++++|...++++.+.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-15 Score=124.73 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=169.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHE-------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST------G 143 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 143 (394)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|+..+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998873 22334667888999999999999999999998754 2
Q ss_pred C-CCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---
Q 016128 144 M-VPSLKCVTSVLSACADLSALKLGKETHGHVIRA------DL-NKDESMATALISMYMKCGQPSWARRFFDQFEIK--- 212 (394)
Q Consensus 144 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 212 (394)
- +.....+..+...+...|++++|...++++.+. +. ......+..+...+...|++++|..++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 234567888999999999999999999998765 22 223566788899999999999999999986542
Q ss_pred ------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHchh
Q 016128 213 ------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-------VKPNSASFVAVLSACGHAGHVDKALQIFTMMDD 279 (394)
Q Consensus 213 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 279 (394)
+....++..+...+...|++++|...++++.+.. ..+.........
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--------------------- 244 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA--------------------- 244 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH---------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH---------------------
Confidence 2234458889999999999999999999998752 111111111111
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 280 DFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
..+..+...+...+.+.++...++.... |+.. ++..+..+|...|++++|.+.++++.++.|.
T Consensus 245 --------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 --------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112222223334444455555555554 3333 7777888888888888888888888776653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-12 Score=111.22 Aligned_cols=293 Identities=9% Similarity=-0.012 Sum_probs=191.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPA----TWNSMISGFSQLGMRFEAFKLFEKMQSTGM-VPSL----KCV 151 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~ 151 (394)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556678899999999999987764332332 456677788889999999999988764310 1122 235
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHcC----CC--C-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCC------Chhh
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRAD----LN--K-DESMATALISMYMKCGQPSWARRFFDQFEIKPD------DPAF 218 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~ 218 (394)
..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++.....+ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888899999998888876532 11 2 234556677888888999999888887543211 1234
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHccCCHHHHHHHHHHchhcCCCCCC---Hhh
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS-ASFV-----AVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEH 289 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 289 (394)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++..... ...+. ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 677778888888999998888887654212111 1121 1223466788888888888887653 21111 224
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC-----C---Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE-----P---TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
+..+...+...|++++|...+++... + +.. .+..+..++...|+.++|...++++....++.... .
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~-----~ 330 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI-----S 330 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC-----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH-----H
Confidence 56677788888888888888877654 1 122 55566777788888888888888888777653322 2
Q ss_pred HHhhcCCcccHHHHHHHhhhc
Q 016128 361 IYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~~ 381 (394)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 233344 4556666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-11 Score=109.48 Aligned_cols=354 Identities=9% Similarity=0.015 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCC---HHHHHHHH
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGR---SEKAMELF 101 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~---~~~a~~~~ 101 (394)
.......++..+..+ +.|...|..++..+.+.+.++.+..+|+++.. +.....|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334455677777776 77999999999999999999999999999876 5677889999999889998 99999999
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHhhc---------
Q 016128 102 EGLAHEG-FKPDPATWNSMISGFSQLGMR--------FEAFKLFEKMQS-TGM-VPS-LKCVTSVLSACAD--------- 160 (394)
Q Consensus 102 ~~m~~~g-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~~--------- 160 (394)
++..... ..|++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9999874 247888988887766655543 334577777654 466 554 4677777765432
Q ss_pred cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------cCCch---------------------------
Q 016128 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMK-------------CGQPS--------------------------- 200 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~--------------------------- 200 (394)
.++++.+..+|+.++......-..+|......-.. ..+++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 34567788888887753222112222111100000 00011
Q ss_pred ----------------------------------------HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHH-HH
Q 016128 201 ----------------------------------------WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAV-EI 238 (394)
Q Consensus 201 ----------------------------------------~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~-~~ 238 (394)
.+..+|++.... |..+..|-..+..+...|+.++|. .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 122333333222 445556666677777788888997 99
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC---------CCCCC------------HhhHHHHHHHH
Q 016128 239 FDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF---------GLKPK------------QEHFGCMVDLL 297 (394)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~------------~~~~~~l~~~~ 297 (394)
|++.... ++.+...+...+......|++++|..+|+.+.... .. |+ ..+|...++..
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHH
Confidence 9998875 33455566777888888999999999999887531 11 31 23677778888
Q ss_pred HhcCcHHHHHHHHHhCCCC-Ch---hhHHHHHHHHHhc-CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHH
Q 016128 298 GRSGRLDEARELIRELPEP-TV---SVYHSLLGACWCH-LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVG 372 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~-~~---~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 372 (394)
.+.|..+.|..+|.+..+. +. ..|...+..-.+. ++.+.|..+|+.+++..|.++..+...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8889999999999988652 21 2444333333344 45899999999999999989888888899888999999999
Q ss_pred HHHHHhhhccc
Q 016128 373 RIRQMINDRQL 383 (394)
Q Consensus 373 ~~~~~m~~~~~ 383 (394)
.+|++......
T Consensus 525 ~lferal~~~~ 535 (679)
T 4e6h_A 525 SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHHhcC
Confidence 99999887644
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=107.73 Aligned_cols=163 Identities=13% Similarity=0.005 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.+..+...+...|++++|...++++... |.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444455555555555555555554433 3344445555555555555555555555554432 1233444444444444
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
.|++++|...++.+.+. .+.+.. .+..+...+...|++++|...+++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~-------------------------------~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFN-------------------------------VRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 45555555444444432 122233 455555555556666666666666
Q ss_pred HHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 344 LQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+.+..|.++..+..++.++...|++++|...++++.+.
T Consensus 136 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666655556666666666666666666666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.6e-13 Score=106.31 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHH
Q 016128 146 PSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMIS 224 (394)
Q Consensus 146 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~ 224 (394)
.|+..+......+...|++++|...|++..+....++...+..+..++...|++++|...|++.... |.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888888899999999999999999998875467777777999999999999999999987665 566777899999
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNS-------ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMV 294 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 294 (394)
.+...|++++|+..+++..+.... +. ..|..+...+...|++++|+..++...+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 999999999999999999886422 44 4577788888899999999999999885 3454 56777777
Q ss_pred HHHHhcCcH--HHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 295 DLLGRSGRL--DEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 295 ~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
..|...|+. +++. .+...+...|.... ....+.+++|+..++++.++.|.++.+...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKAT----PLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHG----GGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777766553 2222 22222222444333 23456789999999999999999988777766554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-12 Score=110.30 Aligned_cols=305 Identities=8% Similarity=0.025 Sum_probs=212.9
Q ss_pred CCCChHHHHHHHHHh--hhhHhHHHHHHHHHHHHhhh--cCCc--hHHHHHHHHHH--HhcCChhHHH---------HHH
Q 016128 7 DEPNSVTFISVISAC--ASLLYLQFGRQVHGLTLKIE--KQSD--TMIGTALVDMY--LKCGCLPCAH---------NVF 69 (394)
Q Consensus 7 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~--~~~g~~~~A~---------~~~ 69 (394)
+.|+..+-..+-..+ .+.+++++|.++++.+.+.. ...| ...|-.++..- .-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 455666666666666 78899999999999887643 2233 33334444321 1123333333 566
Q ss_pred HHhcc--CC-C-h---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHH
Q 016128 70 QELKG--SR-N-I---LTWNTMIAGMMLNGRSEKAMELFEGLAHEGF-KPD----PATWNSMISGFSQLGMRFEAFKLFE 137 (394)
Q Consensus 70 ~~~~~--~~-~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 137 (394)
+.+.. .+ + . ..|......+...|++++|+..|++..+... .++ ..++..+...|...|+++.|+..++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 65542 11 1 1 1223345566789999999999999876411 122 5578889999999999999999999
Q ss_pred HHHhC----CC-CC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHHcCCchHHHHHH
Q 016128 138 KMQST----GM-VP-SLKCVTSVLSACADLSALKLGKETHGHVIRAD--LN---KDESMATALISMYMKCGQPSWARRFF 206 (394)
Q Consensus 138 ~m~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 206 (394)
+..+. +. .+ ...++..+..++...|++++|.+.+++..+.. .. ....++..+..+|...|++++|...|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87643 11 11 24577888999999999999999999887632 11 12356778999999999999999999
Q ss_pred HHhhc-----C-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC---C-CHhhHHHHHHHHHccCC---HHHHHHH
Q 016128 207 DQFEI-----K-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK---P-NSASFVAVLSACGHAGH---VDKALQI 273 (394)
Q Consensus 207 ~~~~~-----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~a~~~ 273 (394)
++... . +....++..+...+.+.|++++|...+++..+.... | ....+..+...+...++ +++|..+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 98755 3 444666888999999999999999999998775321 1 23445666667777788 7788887
Q ss_pred HHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 274 FTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
++... ..+.....+..+...|...|++++|...|++..
T Consensus 326 ~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 326 FEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77642 222334567788999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=102.08 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGY 226 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~ 226 (394)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.... |.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567778888999999999999999988765 346888899999999999999999999997654 66788899999999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874 347788888999999999999999999998764 233455666666666666666666
Q ss_pred HHHHHhCC
Q 016128 307 RELIRELP 314 (394)
Q Consensus 307 ~~~~~~~~ 314 (394)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-12 Score=108.35 Aligned_cols=299 Identities=10% Similarity=0.038 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CC-Ch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH----HH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SR-NI----LTWNTMIAGMMLNGRSEKAMELFEGLAHEGF-KPDP----AT 115 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~ 115 (394)
........+...|++++|...+++... ++ +. ..++.+...+...|++++|.+.+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344555667788999999999998654 22 22 2466677888899999999999998876311 1122 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC----CHH
Q 016128 116 WNSMISGFSQLGMRFEAFKLFEKMQST----GMV--P-SLKCVTSVLSACADLSALKLGKETHGHVIRADLNK----DES 184 (394)
Q Consensus 116 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 184 (394)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999987653 222 2 23456678888899999999999999987654221 245
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhhHH-----HHHHHHhhcCChhhHHHHHHHHHHcCCCCC---Hhh
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK---PDDPAFWN-----AMISGYGRNGEYESAVEIFDLMQQEKVKPN---SAS 253 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 253 (394)
.+..+...+...|++++|...+++.... +..+..+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6778888999999999999999986432 22222222 233447789999999999998876542221 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcC---CCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDF---GLKPKQ-EHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACW 329 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 329 (394)
+..+...+...|++++|...++...... +..++. ..+..+..++...|+.++|...+++...-.. -......+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~~g~~~~~~ 333 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--RTGFISHFV 333 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHCCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--cccHHHHHH
Confidence 6677888999999999999999875431 222222 3566678889999999999999988754000 011122333
Q ss_pred hcCCchHHHHHHHHHHhhCCC
Q 016128 330 CHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~ 350 (394)
..| +....+++.+....|.
T Consensus 334 ~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp TTH--HHHHHHHHHHHHTTCS
T ss_pred Hcc--HHHHHHHHHHHhCCCC
Confidence 344 5566666766666664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=105.72 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-C-CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHH
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQFEIK-P-DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVL 258 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (394)
.++..+......+...|++++|...|++.... | ++...+..+..++...|++++|+..+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 46678888888999999999999999986654 4 67777777888999999999999999998876432 567788888
Q ss_pred HHHHccCCHHHHHHHHHHchhcCCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hh-hHHHHHH
Q 016128 259 SACGHAGHVDKALQIFTMMDDDFGLKPKQ-------EHFGCMVDLLGRSGRLDEARELIRELPE--PT--VS-VYHSLLG 326 (394)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~-~~~~l~~ 326 (394)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|...|++..+ |+ .. .|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8999999999999999998864 22334 4577777888889999999999998887 66 55 7777777
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++... +...++++..+.+.++..+... .....+.+++|+..+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 77554 3455677777776664444433 3445677899999999988754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-11 Score=99.50 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHc-CCchHHHHHHHHhhcC-C--CC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-----
Q 016128 185 MATALISMYMKC-GQPSWARRFFDQFEIK-P--DD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS----- 251 (394)
Q Consensus 185 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 251 (394)
++..+...|... |++++|...|++.... + .+ ..++..+...+...|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 445556666664 6666666666654332 1 01 234566666777777777777777776664322211
Q ss_pred -hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh------hHHHHHHHHH--hcCcHHHHHHHHHhCCCC
Q 016128 252 -ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE------HFGCMVDLLG--RSGRLDEARELIRELPEP 316 (394)
Q Consensus 252 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 316 (394)
..+..+..++...|++++|...+++..+ +.|+.. .+..++.++. ..+++++|+..|+++...
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1345556666667777777777777653 223211 2233444443 345566666666666553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=115.64 Aligned_cols=162 Identities=6% Similarity=0.003 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...++.+..++.+.|++++|++.|++..+ +.+..+|+.+...|.+.|++++|++.|++..+.... +..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345556666666666666666666665543 234455555666666666666666666655554222 35555555556
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
|...|++++|++.|++..+.. +-+...|..+..++...|++++|.+.|++.++... -+...+..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 666666666666655555432 12344455555555555555555555555554432 2344444455555555555555
Q ss_pred HHHHHHh
Q 016128 203 RRFFDQF 209 (394)
Q Consensus 203 ~~~~~~~ 209 (394)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-13 Score=110.66 Aligned_cols=154 Identities=13% Similarity=0.030 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 016128 125 QLGMRFEAFKLFEKMQST-------GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRA------DL-NKDESMATALI 190 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 190 (394)
..|++++|+..|++..+. ..+....++..+..++...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445555555555554331 11222344555555566666666666666555433 11 11233444555
Q ss_pred HHHHHcCCchHHHHHHHHhhcC---------CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHc------CCCC-CHhhH
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK---------PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQE------KVKP-NSASF 254 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 254 (394)
..|...|++++|...+++.... +.....+..+...+...|++++|+..+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5555555555555555543321 112223444455555555555555555554432 0011 12334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHch
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..+...+...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444445555555555544443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-10 Score=94.98 Aligned_cols=180 Identities=9% Similarity=0.022 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC---CChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKP---DDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
+...+++..+.+ .++......+..++...|++++|++++.+..... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 3455555677788888888888888888764432 455667778888888888888888888887
Q ss_pred HcCCCC-----CHhhHHHHHHHH--HccC--CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 244 QEKVKP-----NSASFVAVLSAC--GHAG--HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 244 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
+. .| +..+...++.++ ...| +..+|..+|+++... .|+...-..++.++.+.|++++|...++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 45 355566666553 2234 788888888888654 3443333444447888899999888887654
Q ss_pred C------------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 315 E------------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 315 ~------------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
+ |+.. ++..++......|+ +|.++++++.+..|.+|..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 3 5555 66566655556676 7889999999999987644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-12 Score=103.19 Aligned_cols=189 Identities=14% Similarity=0.076 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CC-CHhhHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KP-NSASFVA 256 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ 256 (394)
...+..+...+.+.|++++|...|+++... |.+ +..+..+..+|.+.|++++|+..|++..+... .| ....+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 334444444555555555555555554433 222 33444555555555555555555555554321 11 1233444
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHchhcCCCCCCHh---------------hHHHHHHHHHhcCcHHHHHHHHHhC
Q 016128 257 VLSACGH--------AGHVDKALQIFTMMDDDFGLKPKQE---------------HFGCMVDLLGRSGRLDEARELIREL 313 (394)
Q Consensus 257 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (394)
+..++.. .|++++|...|+++.+.+.-.+... .+..+...|.+.|++++|...|+++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444444 5555555555555554311111111 1255677888999999999999888
Q ss_pred CC--CC---hh-hHHHHHHHHHhc----------CCchHHHHHHHHHHhhCCCCCch---HHHHHHHHhhcCCcccH
Q 016128 314 PE--PT---VS-VYHSLLGACWCH----------LNSDLGEEMAMKLQEMEPENPTP---FVILSNIYAGLGRWEDV 371 (394)
Q Consensus 314 ~~--~~---~~-~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a 371 (394)
.+ |+ .. .+..+..++... |++++|+..++++.+..|+++.. ...+...+.+.++++++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 65 54 33 677777788765 88899999999999999988643 44444455555554443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=103.34 Aligned_cols=157 Identities=10% Similarity=0.063 Sum_probs=117.7
Q ss_pred HhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 016128 89 MLNGRSEKAMELFEGLAHE-------GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST------GM-VPSLKCVTSV 154 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 154 (394)
...|++++|+.++++..+. ..+....++..+...|...|++++|+..+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22224667888999999999999999999998754 22 2235678888
Q ss_pred HHHhhccchhhHHHHHHHHHHHcC------C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---------CCChhh
Q 016128 155 LSACADLSALKLGKETHGHVIRAD------L-NKDESMATALISMYMKCGQPSWARRFFDQFEIK---------PDDPAF 218 (394)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~ 218 (394)
..++...|++++|.+.++++.+.. . +....++..+...|...|++++|...+++.... +....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 899999999999999999887651 1 224567788889999999999999999886543 222445
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQE 245 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (394)
+..+...+...|++++|...+++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=94.88 Aligned_cols=240 Identities=11% Similarity=0.024 Sum_probs=168.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+-..-.|++..++.-..++. ..........+.+++...|++... ....|....+..+...+ ..
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~---- 83 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT---- 83 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT----
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc----
Confidence 33445677777776332221 111223333455667666666531 12234444444444433 32
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 201 WARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 201 ~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
.|...|+++... +++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 277888887655 35666667888999999999999999999877654 2356778888999999999999999999997
Q ss_pred hcCCCCC-----CHhhHHHHHHHH--HhcC--cHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 279 DDFGLKP-----KQEHFGCMVDLL--GRSG--RLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 279 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+ |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 56 355666666663 3334 89999999999987 54223344444889999999999999988776
Q ss_pred ----------CCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 348 ----------EPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 348 ----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+|.++.++..++......|+ +|.++++++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899999888888887887 8999999988754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=93.60 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH--hhHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK-PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS--ASFV 255 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 255 (394)
+...+..+...+...|++++|...|+++... |.+ ...+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888889999999999987654 323 245777888889999999999999998876432111 2344
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCC
Q 016128 256 AVLSACGH------------------AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPT 317 (394)
Q Consensus 256 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (394)
.+..++.. .|++++|...|+.+.+. .+-+.......... +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHH----------
Confidence 44455443 34556666666665542 11111111111100 0000000
Q ss_pred hhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcccHHHHHHHhhhccccc
Q 016128 318 VSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP---TPFVILSNIYAGLGRWEDVGRIRQMINDRQLTK 385 (394)
Q Consensus 318 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 385 (394)
......+...+...|++++|+..|+++.+..|.++ .++..++.++.+.|++++|++.++.+...+...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113456778899999999999999999999876 568899999999999999999999888765443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=96.05 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=108.9
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|+..|++..+. -+.+...+..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 4455666778888888888776542 113445667788888888888888888888763 2345778888888888899
Q ss_pred cHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHH-HHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 302 RLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEM-AMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 302 ~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
++++|...|++..+ |+.. +|..+...+.+.|+.++|.+. ++++.+++|.++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999988888876 7666 888899999999998776654 589999999999998888888877774
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-11 Score=96.89 Aligned_cols=169 Identities=11% Similarity=0.032 Sum_probs=140.3
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-Hh
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPN---SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QE 288 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 288 (394)
+.++..+-.+...+.+.|++++|+..|+++.+.... + ...+..+..++...|++++|...|+.+.+.+.-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456777888889999999999999999999887422 3 567888999999999999999999999875222222 45
Q ss_pred hHHHHHHHHHh--------cCcHHHHHHHHHhCCC--CChh-hH-----------------HHHHHHHHhcCCchHHHHH
Q 016128 289 HFGCMVDLLGR--------SGRLDEARELIRELPE--PTVS-VY-----------------HSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 289 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~--~~~~-~~-----------------~~l~~~~~~~g~~~~a~~~ 340 (394)
.+..+..++.. .|++++|...|+++.+ |+.. .. ..+...+...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67778888888 9999999999999886 6554 44 5568889999999999999
Q ss_pred HHHHHhhCCCCC---chHHHHHHHHhhc----------CCcccHHHHHHHhhhcc
Q 016128 341 AMKLQEMEPENP---TPFVILSNIYAGL----------GRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 341 ~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 382 (394)
|+++.+..|.++ ..+..++.+|... |++++|+..++++.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999999998855 4788888899876 88899999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-09 Score=97.58 Aligned_cols=353 Identities=10% Similarity=-0.017 Sum_probs=194.8
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC-hhHHHHHHHHhcc-----CCChhHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC-LPCAHNVFQELKG-----SRNILTWNT 83 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~-----~~~~~~~~~ 83 (394)
-...|...+..+-. |+++.+.++|+..+.. .|+...|...+....+.++ .+....+|+.... ..+...|..
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 34556666666544 6778888888877763 3577788877777766653 3556666666543 235566666
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHHhCCCCC
Q 016128 84 MIAGMM----LNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ-------------LGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 84 ll~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~~~~~~ 146 (394)
.+..+. ..++.+.+.++|++........-...|......-.. .+.+..|..+++++...-...
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 666543 235677788888887764211112222222221111 011223333343333210001
Q ss_pred CHHHHHHHHHHhhcc----c---hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhH
Q 016128 147 SLKCVTSVLSACADL----S---ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFW 219 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~----~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 219 (394)
+...|...+..-... . ..+.+..+|++++... +.+..+|...+..+.+.|+.++|..++++....|.+...|
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHH
Confidence 223444444332211 0 1344566777777654 3456777777777777888888888888755543333333
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcC---------CCC---CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQEK---------VKP---NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ 287 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (394)
.. |....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. .. . ..+.
T Consensus 250 ~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~ 319 (493)
T 2uy1_A 250 LY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGP 319 (493)
T ss_dssp HH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCH
T ss_pred HH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCCh
Confidence 32 2221111222 22222210 001 1234556666666677888888888888 32 1 2233
Q ss_pred hhHHHHHHHHHh-cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 288 EHFGCMVDLLGR-SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 288 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.+|...+..-.. .++.+.|..+|+...+ |+.. .|...++.....|+.+.|..+|+++ +.....|...+..-.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 444332222222 2368888888887765 5444 5566677777788888888888886 234556777777777
Q ss_pred hcCCcccHHHHHHHhhh
Q 016128 364 GLGRWEDVGRIRQMIND 380 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~ 380 (394)
..|+.+.+..+++++.+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78888888888877764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-11 Score=86.65 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=65.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|..+++++.. |+.. .+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3444444444455554444444432 122333444444445555555555555544433 3322 5555556666666
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
++++|...++++.+..|.++..+..++.++.+.|++++|...++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666666666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=116.08 Aligned_cols=166 Identities=11% Similarity=-0.040 Sum_probs=76.5
Q ss_pred HcCCchHHHHHHHHhh--------cC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 195 KCGQPSWARRFFDQFE--------IK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
..|++++|.+.+++.. .. |.+...+..+..++...|++++|+..|++..+... .+...+..+..++...|
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcC
Confidence 3444555555554443 11 33344444444455555555555555555444321 13344444444455555
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAM 342 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 342 (394)
++++|...|++..+. .+.+...+..+..+|.+.|++++ ...|++..+ |+.. .|..+..++...|++++|++.|+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 11223344444444555555555 444444443 3333 44445555555555555555555
Q ss_pred HHHhhCCCCCchHHHHHHHHhh
Q 016128 343 KLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
++.+.+|.+..++..++.++..
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-
T ss_pred hhcccCcccHHHHHHHHHHHHc
Confidence 5555555444445444444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-10 Score=93.60 Aligned_cols=205 Identities=11% Similarity=0.010 Sum_probs=150.5
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc------CC--ChhHHHHHHHHHHhcCCHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG------SR--NILTWNTMIAGMMLNGRSEK 96 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~--~~~~~~~ll~~~~~~~~~~~ 96 (394)
+++++|.+.|+.. ...|...|++++|...|++... .+ ...+|+.+...|.+.|++++
T Consensus 31 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3588888888776 3457788999999999987653 11 14678899999999999999
Q ss_pred HHHHHHHHHhcCCC-CC----HHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCC----CCC-HHHHHHHHHHhhccchhh
Q 016128 97 AMELFEGLAHEGFK-PD----PATWNSMISGFSQL-GMRFEAFKLFEKMQSTGM----VPS-LKCVTSVLSACADLSALK 165 (394)
Q Consensus 97 a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~----~~~-~~~~~~l~~~~~~~~~~~ 165 (394)
|+..|++..+.... .+ ..+++.+...|... |++++|+..|++..+... .+. ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999887764111 01 45788899999996 999999999998875311 111 356888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCchHHHHHHHHhhcCCCC-hh-----hHHHHHHHHh--hcCC
Q 016128 166 LGKETHGHVIRADLNKDE------SMATALISMYMKCGQPSWARRFFDQFEIKPDD-PA-----FWNAMISGYG--RNGE 231 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~l~~~~~--~~~~ 231 (394)
+|...+++..+....... ..+..+..++...|++++|...|++.....|+ .. .+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999999886543322 25677888999999999999999998764222 21 2344555554 4567
Q ss_pred hhhHHHHHHHHHH
Q 016128 232 YESAVEIFDLMQQ 244 (394)
Q Consensus 232 ~~~a~~~~~~~~~ 244 (394)
+++|+..|+++..
T Consensus 256 ~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 256 LSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHhccCCc
Confidence 8888888876644
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-10 Score=80.55 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHh
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMML 90 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~ 90 (394)
.|..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+++.. +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34455555556666666666666655543 33445555555555555666666665555443 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555554421 1344555555555555555555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-10 Score=90.02 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=97.6
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG 301 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (394)
+..+|.+.|++++|+..|++..+... -+...+..+...+...|++++|...|++..+. -+.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 88888999999999999999888743 36788888999999999999999999998863 2345677888888776655
Q ss_pred c--HHHHHHHHHhCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 302 R--LDEARELIRELPEPTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 302 ~--~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+ .+.+...++....|+.. .+.....++...|++++|+..|++++++.|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 3 45667778877776554 44555667777899999999999999999853
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-10 Score=105.75 Aligned_cols=170 Identities=12% Similarity=0.006 Sum_probs=103.5
Q ss_pred hccchhhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhc
Q 016128 159 ADLSALKLGKETHGHVI--------RADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRN 229 (394)
Q Consensus 159 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 229 (394)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|...|++.... |.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666667776666665 322 234455666666666777777777777665443 55666666666677777
Q ss_pred CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 230 GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
|++++|+..|++..+.... +...+..+..++...|++++ +..|++..+. -+.+...+..+..++.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776665322 45556666666666777766 6666666542 223455666666677777777777777
Q ss_pred HHhCCC--CChh-hHHHHHHHHHhcCC
Q 016128 310 IRELPE--PTVS-VYHSLLGACWCHLN 333 (394)
Q Consensus 310 ~~~~~~--~~~~-~~~~l~~~~~~~g~ 333 (394)
|++..+ |+.. .+..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 776665 5444 56666666555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-10 Score=96.13 Aligned_cols=164 Identities=9% Similarity=-0.018 Sum_probs=127.8
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHH
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGC 292 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (394)
|.+...+..+...+...|++++|+..|++..+... -+...+..+...+...|++++|...++.+... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 35556677777888888888889888888887643 25677888888888889999999888888753 445433322
Q ss_pred -HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC--CchHHHHHHHHhhcC
Q 016128 293 -MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--PTPFVILSNIYAGLG 366 (394)
Q Consensus 293 -l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 366 (394)
....+...++.++|...+++... |+.. .+..+...+...|++++|+..++++.+.+|.+ ...+..++.++...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22345667777778888887765 7766 88888999999999999999999999999877 778999999999999
Q ss_pred CcccHHHHHHHhhh
Q 016128 367 RWEDVGRIRQMIND 380 (394)
Q Consensus 367 ~~~~a~~~~~~m~~ 380 (394)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888877653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=90.16 Aligned_cols=159 Identities=9% Similarity=0.025 Sum_probs=108.7
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH-
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL- 296 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 296 (394)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+... .|++..+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 34555666777777777777777766543 225566677777777777777777777777643 2233333222211
Q ss_pred HHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC--CchHHHHHHHHhhcCCcccH
Q 016128 297 LGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN--PTPFVILSNIYAGLGRWEDV 371 (394)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 371 (394)
+...++..+|...+++..+ |+.. .+..+..++...|++++|...|+++.+..|.. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122222345666766654 6665 88888889999999999999999999988764 45888899999999999999
Q ss_pred HHHHHHhhh
Q 016128 372 GRIRQMIND 380 (394)
Q Consensus 372 ~~~~~~m~~ 380 (394)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-09 Score=86.35 Aligned_cols=172 Identities=7% Similarity=-0.056 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC----CHHHHHHHHHHc
Q 016128 202 ARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG----HVDKALQIFTMM 277 (394)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 277 (394)
|.+.|++.... .++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|+..
T Consensus 5 A~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44444444332 455555566666666666666666666665543 44555555555555 4 666666666666
Q ss_pred hhcCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHhCCCCCh-----hhHHHHHHHHHh----cCCchHHHHHHHHH
Q 016128 278 DDDFGLKPKQEHFGCMVDLLGR----SGRLDEARELIRELPEPTV-----SVYHSLLGACWC----HLNSDLGEEMAMKL 344 (394)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~ 344 (394)
.+. -++..+..|...|.. .+++++|..+|++..+.+. ..+..|...|.. .+++++|+..|+++
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 543 244555556666655 5667777777776666222 366666666666 66777777777777
Q ss_pred HhhCCCCCchHHHHHHHHhhc-C-----CcccHHHHHHHhhhccc
Q 016128 345 QEMEPENPTPFVILSNIYAGL-G-----RWEDVGRIRQMINDRQL 383 (394)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 383 (394)
.+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 766 45566777777777643 2 67777777777776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-09 Score=84.65 Aligned_cols=174 Identities=11% Similarity=-0.011 Sum_probs=78.2
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHh
Q 016128 66 HNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG----MRFEAFKLFEKMQS 141 (394)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~ 141 (394)
.+.|++..+..++..+..+...|...+++++|+..|++..+.| ++.++..|...|.. + ++++|+.+|++..+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444432 33444444444444 3 44555555554444
Q ss_pred CCCCCCHHHHHHHHHHhhc----cchhhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcC
Q 016128 142 TGMVPSLKCVTSVLSACAD----LSALKLGKETHGHVIRADLN-KDESMATALISMYMK----CGQPSWARRFFDQFEIK 212 (394)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 212 (394)
.| +...+..+...|.. .+++++|...+++..+.+.. .++..+..|...|.. .+++++|..+|++....
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 32 23334444444433 44444555554444443311 013444445555544 44555555555554443
Q ss_pred CCChhhHHHHHHHHhhc-C-----ChhhHHHHHHHHHHcC
Q 016128 213 PDDPAFWNAMISGYGRN-G-----EYESAVEIFDLMQQEK 246 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 246 (394)
+.++..+..|...|... | +.++|...|++..+.|
T Consensus 159 ~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 159 SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 33444444455544432 1 5555555555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=107.74 Aligned_cols=161 Identities=11% Similarity=0.001 Sum_probs=127.3
Q ss_pred cCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 016128 196 CGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274 (394)
Q Consensus 196 ~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (394)
.|++++|...|++.... |.+...|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999987655 6678889999999999999999999999998874 336788999999999999999999999
Q ss_pred HHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc---CCchHHHHHHHHHHhhC
Q 016128 275 TMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH---LNSDLGEEMAMKLQEME 348 (394)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 348 (394)
++..+. .+.+...+..+...|.+.|++++|.+.|++..+ |+.. .+..+..++... |+.++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 344578899999999999999999999999876 6665 899999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 016128 349 PENPTPFVILS 359 (394)
Q Consensus 349 ~~~~~~~~~l~ 359 (394)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-10 Score=104.96 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=121.3
Q ss_pred cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 161 LSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...|++.... |.+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988765 336888999999999999999999999997665 667888999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc---CcHHHHHHHHHhCCC-
Q 016128 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS---GRLDEARELIRELPE- 315 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~- 315 (394)
++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++..+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998874 336788999999999999999999999999864 234577888999999999 999999999998876
Q ss_pred -CChh-hHHHHH
Q 016128 316 -PTVS-VYHSLL 325 (394)
Q Consensus 316 -~~~~-~~~~l~ 325 (394)
|+.. .|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 5544 554443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-09 Score=85.42 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=37.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 016128 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACA 159 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 159 (394)
+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455555555555555555555554322 45555555555555555555555555555432 223444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-09 Score=86.78 Aligned_cols=186 Identities=11% Similarity=0.013 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChh---hHH
Q 016128 147 SLKCVTSVLSACADLSALKLGKETHGHVIRADLNK--DESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPA---FWN 220 (394)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~ 220 (394)
+...+..+...+...|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++... |.++. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556677788899999999999999998865322 2467778899999999999999999997664 44443 355
Q ss_pred HHHHHHhh------------------cCChhhHHHHHHHHHHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 221 AMISGYGR------------------NGEYESAVEIFDLMQQEKVKPNSA-SFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 221 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
.+..++.. .|++++|+..|+++.+. .|+.. ........ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 55555543 57899999999999886 34432 22211110 01111111
Q ss_pred CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh----hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 282 GLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS----VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
.....+...|.+.|++++|...|+++.+ |+.. .+..+..++.+.|+.++|.+.++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1123466788899999999999998876 5543 6888889999999999999999999888887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-07 Score=79.46 Aligned_cols=218 Identities=11% Similarity=0.071 Sum_probs=152.8
Q ss_pred hhHh-HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC--ChhHHHHHHHHhcc--CCChhHHHHHHHHH----Hhc--
Q 016128 23 SLLY-LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG--CLPCAHNVFQELKG--SRNILTWNTMIAGM----MLN-- 91 (394)
Q Consensus 23 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~ll~~~----~~~-- 91 (394)
+.|. .++|+++++.++..+ |-+..+|+.--.++...| ++++++..++.+.. +.+..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3343 457888888888877 666778888888888888 89999999888765 44555666544444 444
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-----
Q 016128 92 -GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF--EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA----- 163 (394)
Q Consensus 92 -~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----- 163 (394)
+++++++.+++.+.+...+ +..+|+.-.-++.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 7888899999988887554 7888888777777888887 88888888887653 367777766666666665
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHhhcC----CCChhhHHHHHHHHhhcCChhhHHH
Q 016128 164 -LKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSW-ARRFFDQFEIK----PDDPAFWNAMISGYGRNGEYESAVE 237 (394)
Q Consensus 164 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (394)
++++.+.+..++...+ -|...++.+...+.+.|+... +..+.+++... +.++..+..++..|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 6777777777777653 367777777777777766433 44455554331 3455556667777777777777777
Q ss_pred HHHHHHH
Q 016128 238 IFDLMQQ 244 (394)
Q Consensus 238 ~~~~~~~ 244 (394)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-09 Score=88.15 Aligned_cols=164 Identities=9% Similarity=-0.025 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 016128 75 SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSV 154 (394)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 154 (394)
+.+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 334444555555555666666666666665554222 4555555566666666666666666555443 2333222211
Q ss_pred -HHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC--hhhHHHHHHHHhhcC
Q 016128 155 -LSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD--PAFWNAMISGYGRNG 230 (394)
Q Consensus 155 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~ 230 (394)
...+...++.+.|...+++..... +.+...+..+...+...|++++|...|+++... |.+ ...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 122334444555555555555443 224445555555555555555555555554433 222 334555555555555
Q ss_pred ChhhHHHHHHHH
Q 016128 231 EYESAVEIFDLM 242 (394)
Q Consensus 231 ~~~~a~~~~~~~ 242 (394)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=84.08 Aligned_cols=159 Identities=9% Similarity=-0.024 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCChhHHHHHHHH-HHhc
Q 016128 14 FISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRNILTWNTMIAG-MMLN 91 (394)
Q Consensus 14 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~~-~~~~ 91 (394)
+..+...+.+.|++++|...++..++.. |.+...+..+..++...|++++|+..|++... .|+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3444455556666666666666666554 44556666666666666666666666666543 2233222211111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccchhhHHHHH
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP-SLKCVTSVLSACADLSALKLGKET 170 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 170 (394)
+...+|+..+++..+.... +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223345555555554221 45555556666666666666666666655543221 233444555555555555555555
Q ss_pred HHHH
Q 016128 171 HGHV 174 (394)
Q Consensus 171 ~~~~ 174 (394)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-10 Score=82.53 Aligned_cols=110 Identities=8% Similarity=-0.050 Sum_probs=53.3
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~ 98 (394)
+...|++++|++.+....... +.+...+..+..+|.+.|++++|++.|++... +.+..+|..+...|.+.|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 344555555555555544332 22233344455555555555555555555433 234444555555555555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 132 (394)
..|++..+.... +..+|..+...|.+.|++++|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Confidence 555555544221 344455555555555554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-08 Score=81.90 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=93.2
Q ss_pred CCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChh--hHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC------H
Q 016128 197 GQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYE--SAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH------V 267 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 267 (394)
++++++..+++.+... |.+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 4566666666665433 556666666666666666666 677777777666433 55555555555555454 6
Q ss_pred HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH-HHHHHHhCCC-----CChh-hHHHHHHHHHhcCCchHHHHH
Q 016128 268 DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE-ARELIRELPE-----PTVS-VYHSLLGACWCHLNSDLGEEM 340 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~ 340 (394)
+++++.++.+.. ..+-|...|+.+...+.+.|+... +..+..++.+ |... .+..++.++.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 666666666654 223455556655555655555333 3344444433 2222 666666667677777777777
Q ss_pred HHHHHh-hCCCCCchHHHHH
Q 016128 341 AMKLQE-MEPENPTPFVILS 359 (394)
Q Consensus 341 ~~~~~~-~~~~~~~~~~~l~ 359 (394)
++.+.+ .+|.+...|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 777765 5666655555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=91.89 Aligned_cols=221 Identities=12% Similarity=-0.008 Sum_probs=140.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARR 204 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (394)
..|++++|.+++++..+.. +.. .+...++++.|...|..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577888888888776531 110 011145666666665543 445667788888887
Q ss_pred HHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcC--C-CCC--HhhHHHHHHHHHccCCHHHHHH
Q 016128 205 FFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEK--V-KPN--SASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 205 ~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.|.+.... ..+ ..+|+.+...|...|++++|+..|++..+.- . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77764332 111 3357777788888888888888888765431 1 111 3466777777777 88888888
Q ss_pred HHHHchhcCCCCC----CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CC---hh-hHHHHHHHHHhcCCchHHHH
Q 016128 273 IFTMMDDDFGLKP----KQEHFGCMVDLLGRSGRLDEARELIRELPE-----PT---VS-VYHSLLGACWCHLNSDLGEE 339 (394)
Q Consensus 273 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~-~~~~l~~~~~~~g~~~~a~~ 339 (394)
.+++..+...-.. ...++..+...|.+.|++++|+..|++... ++ .. .+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887764311011 135677778888888888888888887765 11 12 55666677777788888888
Q ss_pred HHHHHHhhCCCCCch-----HHHHHHHHhhcCCcccHHH
Q 016128 340 MAMKLQEMEPENPTP-----FVILSNIYAGLGRWEDVGR 373 (394)
Q Consensus 340 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~ 373 (394)
.|+++. ..|..... ...++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888888 77765443 33344444 4566555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-08 Score=87.17 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH-AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
|...+....+.++.+.|..+|++. +. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 444444444455555555565555 21 11122223221111111 124555556665555432 12233344444544
Q ss_pred HhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 298 GRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
.+.|+.+.|..+|+++.. ....|...+..-...|+.+.+..++++..+
T Consensus 365 ~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555556666655531 222555555554555555555555555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=94.50 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 185 MATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 185 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.+..+...+...|++++|...|++.... |.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444455555555555443322 3344444455555555555555555555544432 1133444444455555
Q ss_pred cCCHHHHHHHHHHch
Q 016128 264 AGHVDKALQIFTMMD 278 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~ 278 (394)
.|++++|...|+...
T Consensus 85 ~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 85 MESYDEAIANLQRAY 99 (281)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=84.66 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+.+.|++++|...|++... |+.. .|..+..++...|++++|+..|+++.+++|.++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 44566677778888888888888888775 6666 88888888888888888888888888888888888888888888
Q ss_pred hcCCcccHHHHHHHhhhcc
Q 016128 364 GLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~~ 382 (394)
+.|++++|+..|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=79.05 Aligned_cols=108 Identities=7% Similarity=-0.069 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC 328 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~ 328 (394)
..+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++..+ |+.. .|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555666677777777777777776652 234566667777777777777777777777665 5555 777777778
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
...|++++|++.|+++.+++|.++.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888777776666544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-09 Score=84.90 Aligned_cols=128 Identities=14% Similarity=-0.010 Sum_probs=103.1
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHH
Q 016128 218 FWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLL 297 (394)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (394)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...++..... .+.+...+..+...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 35566777888899999999888773 567888888888899999999999999888763 244667888888889
Q ss_pred HhcCcHHHHHHHHHhCCC--CC----------------h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 298 GRSGRLDEARELIRELPE--PT----------------V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~--~~----------------~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
...|++++|...|++..+ |+ . ..+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999988887764 21 2 377888888888999999999999998888865
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-08 Score=85.09 Aligned_cols=226 Identities=10% Similarity=-0.033 Sum_probs=147.5
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFE 102 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 102 (394)
..|++++|.+++++..+... .. .+...++++.|...|.+. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 46889999999998876542 11 011146777777777664 345667788888888777
Q ss_pred HHHhc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 103 GLAHE----GFKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 103 ~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
+..+. |-.+ -..+|+.+...|...|++++|+..|++..+. |-.. ...++..+..+|.. |++++|...++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76543 1111 1446777888888888888888888776532 2111 13466777777877 88888888888
Q ss_pred HHHHcCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHH
Q 016128 173 HVIRADLNK-----DESMATALISMYMKCGQPSWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFD 240 (394)
Q Consensus 173 ~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 240 (394)
+..+..... ...++..+...|...|++++|...|++.... ... ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 776542111 1456777888888999999999888876542 111 2245666677778899999999999
Q ss_pred HHHHcCCCC-CH---hhHHHHHHHHHccCCHHHHHHH
Q 016128 241 LMQQEKVKP-NS---ASFVAVLSACGHAGHVDKALQI 273 (394)
Q Consensus 241 ~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~~ 273 (394)
+.. ..... +. .....++.++ ..++.+.+..+
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 887 42111 11 2344555555 56777776663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=85.81 Aligned_cols=159 Identities=7% Similarity=-0.068 Sum_probs=106.8
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCC-CCCHh----hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHH
Q 016128 222 MISGYGRNGEYESAVEIFDLMQQEKV-KPNSA----SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGC 292 (394)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 292 (394)
.+..+...|++++|...+++..+... .|+.. .+..+...+...+++++|...++...+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677777777777777765321 12211 2234555566667778888777777653111222 225777
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC------CchHH
Q 016128 293 MVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN------PTPFV 356 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 356 (394)
+...|...|++++|...|+++.+ +... ++..+...|...|++++|+..++++.++.+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77778888888888777777652 2222 77888888889999999999998888765322 45688
Q ss_pred HHHHHHhhcCC-cccHHHHHHHhhh
Q 016128 357 ILSNIYAGLGR-WEDVGRIRQMIND 380 (394)
Q Consensus 357 ~l~~~~~~~g~-~~~a~~~~~~m~~ 380 (394)
.++.++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999985 5888888887754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.5e-08 Score=80.01 Aligned_cols=204 Identities=11% Similarity=0.016 Sum_probs=139.5
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 136 FEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESM---ATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 136 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
+.++......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444433346777776666665543211 1111111222222 233467788899999999999987765
Q ss_pred CC-Chh------hHHHHHHHHhhcCChhhHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 213 PD-DPA------FWNAMISGYGRNGEYESAVEIFDLMQQEKVK-PN----SASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 213 ~~-~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
.+ ++. .+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 222 2345677777888999999999999874322 22 236888999999999999999999988742
Q ss_pred C----CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCC-chHHHHHHHHHH
Q 016128 281 F----GLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--------PTVS-VYHSLLGACWCHLN-SDLGEEMAMKLQ 345 (394)
Q Consensus 281 ~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~-~~~a~~~~~~~~ 345 (394)
. +..+ ...++..+...|.+.|++++|...+++..+ +... +|..+..++...|+ +++|.+.++++.
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1111 134678888999999999999999988764 2223 88899999999995 599999999988
Q ss_pred hhC
Q 016128 346 EME 348 (394)
Q Consensus 346 ~~~ 348 (394)
.+.
T Consensus 265 ~i~ 267 (293)
T 3u3w_A 265 FFF 267 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-08 Score=83.24 Aligned_cols=161 Identities=7% Similarity=-0.059 Sum_probs=100.0
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHccCCHHHHHHHHHHchhcCC--CCCC--Hhh
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS-----ASFVAVLSACGHAGHVDKALQIFTMMDDDFG--LKPK--QEH 289 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~ 289 (394)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 444555666677777777777666554222111 1233344555666777777777776654211 1111 336
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC-----CC----h-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--C----Cc
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE-----PT----V-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--N----PT 353 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~ 353 (394)
++.+...|...|++++|...|++..+ |+ . .++..+...|...|++++|+..++++.+..+. + ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66777777777777777777776652 22 1 36777777788888888888888877765421 1 34
Q ss_pred hHHHHHHHHhhcCCcccH-HHHHHHhh
Q 016128 354 PFVILSNIYAGLGRWEDV-GRIRQMIN 379 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a-~~~~~~m~ 379 (394)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 567778888888888888 66666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-09 Score=80.32 Aligned_cols=126 Identities=7% Similarity=-0.081 Sum_probs=86.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++... |+.. .+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555666666666666666666542 233455666666677777777777777766654 4444 7777778888
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHH--HhhcCCcccHHHHHHHhhh
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNI--YAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 380 (394)
..|++++|...++++.+..|.++..+..+..+ +.+.|++++|+..++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888888777776444444 6677888888888776643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=77.97 Aligned_cols=95 Identities=7% Similarity=0.026 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+......|.+.|++++|++.|++..+ |+.. .|..+..++...|++++|+..++++++++|.++.+|..++.++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4677788999999999999999999876 7666 999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHhhhcc
Q 016128 365 LGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~~ 382 (394)
.|++++|++.|++..+..
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 999999999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=83.15 Aligned_cols=101 Identities=11% Similarity=-0.085 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC 328 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~ 328 (394)
..+..+...+...|++++|...|+..... -+.+...+..+..+|...|++++|...|++... |+.. .+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555556666666666666666666542 233455566666666666666666666666654 4444 666666666
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
...|++++|+..|+++.+..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 66666666666666666666655544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.8e-09 Score=75.45 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=86.9
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+ |+.. .+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666667777777777777776653 233556667777777777777777777777665 5544 77888888
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (394)
+...|++++|...++++.+..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888899999999999998888888888888888888877753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-08 Score=76.99 Aligned_cols=128 Identities=8% Similarity=-0.141 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGM 128 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 128 (394)
+..+...+...|++++|+..|++.. +++...|..+...+...|++++|+..|++..+... .+..+|..+..+|...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHccc
Confidence 3445556666777777777777766 55666777777777777777777777777766532 256667777777777777
Q ss_pred HHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcC
Q 016128 129 RFEAFKLFEKMQSTGMV--------------P-SLKCVTSVLSACADLSALKLGKETHGHVIRAD 178 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (394)
+++|+..|++..+.... | ....+..+..++...|++++|...++...+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777776653211 1 11445555566666666666666666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-09 Score=75.62 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=77.0
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++..+ |+.. .+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345555566666666666666666666542 223455666666666666777777666666654 4444 77777778
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+...|++++|.+.++++.+..|.+...+..++.++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888877777877777776655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-10 Score=88.72 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+..+..+|.+.|++++|...+++... |+.. .+..+..++...|++++|+..|+++.+..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888899999999999888876 6555 888999999999999999999999999999999999999999999
Q ss_pred cCCcccHH-HHHHHhhhc
Q 016128 365 LGRWEDVG-RIRQMINDR 381 (394)
Q Consensus 365 ~g~~~~a~-~~~~~m~~~ 381 (394)
.++.+++. ..+..|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888877 556655543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=73.29 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=78.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH
Q 016128 251 SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA 327 (394)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~ 327 (394)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|..+++++.. |+.. ++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666666667777777766666543 233455666666777777777777777766654 4444 77777788
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 328 CWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888777777777665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-06 Score=73.22 Aligned_cols=167 Identities=8% Similarity=-0.012 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC-ChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc-C-CHHHHHHHH
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG-CLPCAHNVFQELKG--SRNILTWNTMIAGMMLN-G-RSEKAMELF 101 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~-~-~~~~a~~~~ 101 (394)
.++|+++++.++..+ +-+..+|+.--.++...| .+++++..++.+.. +.+..+|+.-...+.+. + +++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 345666666666555 444555555555555555 36666666665543 33444555544444444 4 556666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-------hhH
Q 016128 102 EGLAHEGFKPDPATWNSMISGFSQLGMRF--------EAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA-------LKL 166 (394)
Q Consensus 102 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 166 (394)
+.+.+...+ |..+|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 666655333 5555554444444444443 5555555555543 2244555554444444443 344
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016128 167 GKETHGHVIRADLNKDESMATALISMYMKCG 197 (394)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (394)
+.+.+.+++...+ -|...++.+-..+.+.|
T Consensus 227 ELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 227 ELIYILKSIHLIP-HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 4444444444432 24444444444444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-08 Score=80.77 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=66.8
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC--HhhHHHHHHHHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK--QEHFGCMVDLLG 298 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 298 (394)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 34455555666666666665555432 33223334444555556666666666544321 0 110 124445555566
Q ss_pred hcCcHHHHHHHHHhCCC-C---C-hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 299 RSGRLDEARELIRELPE-P---T-VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~-~---~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
+.|++++|+..|++... | . .. .......++.+.|+.++|...|+++...+|. +.....|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 66666666666665532 2 1 11 4444555555666666666666666666654 4333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-09 Score=78.18 Aligned_cols=97 Identities=13% Similarity=-0.061 Sum_probs=44.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~ 331 (394)
..+...+...|++++|...|+..... -+.+...+..+..+|.+.|++++|...|++... |+.. .+..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33344444445555555555544431 122334444444444455555555555444443 3333 444444444455
Q ss_pred CCchHHHHHHHHHHhhCCCCCc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
|++++|...|+++.+..|.++.
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCcc
Confidence 5555555555555444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=7.5e-09 Score=88.48 Aligned_cols=125 Identities=10% Similarity=-0.067 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----------------HhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----------------QEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
..+..+...+...|++++|...|++.... .|+ ...+..+..+|.+.|++++|+..+++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555432 111 46778888888889999999988888876
Q ss_pred --CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccH-HHHHHHhh
Q 016128 316 --PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDV-GRIRQMIN 379 (394)
Q Consensus 316 --~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 379 (394)
|+.. .|..+..++...|++++|+..|+++.++.|.++.++..++.++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 8889999999999999999999999999999999999999999999999988 44555553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-09 Score=79.17 Aligned_cols=95 Identities=13% Similarity=-0.003 Sum_probs=67.0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+.+.|++++|...|++... |+.. .|..+..++...|++++|+..|+++.+.+|.++..+..++.++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34555666677777777777777776654 5544 66777777777777777777777777777777777777777777
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
..|++++|+..+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=81.44 Aligned_cols=127 Identities=9% Similarity=0.078 Sum_probs=101.1
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH-HHhcCcH-
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL-LGRSGRL- 303 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 303 (394)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++...+. .+.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 456789999999999988764 346788889999999999999999999998763 23466777788888 7788998
Q ss_pred -HHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchH
Q 016128 304 -DEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPF 355 (394)
Q Consensus 304 -~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 355 (394)
++|...+++..+ |+.. .+..+...+...|++++|...++++.+..|.++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999998876 6655 888888999999999999999999999998876544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-08 Score=82.64 Aligned_cols=190 Identities=10% Similarity=-0.038 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 016128 148 LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGY 226 (394)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~ 226 (394)
...+..+...+...|++++|...+++..+... .+...+..+..+|.+.|++++|...+++.... |.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455555556666666666666666655532 25666677777777777777777777775554 55666677777777
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHH
Q 016128 227 GRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEA 306 (394)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 306 (394)
...|++++|+..|++..+.... +...+...+....+ ..++... ...... ..+.+......+... ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHH--HHHHHHHH
Confidence 7888888888877776654211 11111111111111 1111111 112122 334444444443322 25777888
Q ss_pred HHHHHhCCC--CChh-hHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 016128 307 RELIRELPE--PTVS-VYHSLLGACWCH-LNSDLGEEMAMKLQE 346 (394)
Q Consensus 307 ~~~~~~~~~--~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 346 (394)
.+.+++..+ |+.. ....+...+.+. +.++++.++|+++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 877777665 5444 444444444443 556777777777765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=79.44 Aligned_cols=164 Identities=5% Similarity=-0.096 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--H
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPD-----PATWNSMISGFSQLGMRFEAFKLFEKMQSTGM---VPS--L 148 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~ 148 (394)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566677777888888877777666432211 12233455556677777777777777664311 111 3
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHhhcCC---C----C
Q 016128 149 KCVTSVLSACADLSALKLGKETHGHVIRA--DLNKD----ESMATALISMYMKCGQPSWARRFFDQFEIKP---D----D 215 (394)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----~ 215 (394)
.+++.+...|...|++++|...++++.+. ..+.+ ..++..+...|...|++++|...+++..... . -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35666666666777777777776666521 01111 1355566666666666666666666543210 0 1
Q ss_pred hhhHHHHHHHHhhcCChhhH-HHHHHHH
Q 016128 216 PAFWNAMISGYGRNGEYESA-VEIFDLM 242 (394)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 242 (394)
..+|..+..+|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33455566666666666666 5545544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=75.50 Aligned_cols=121 Identities=9% Similarity=0.008 Sum_probs=97.5
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHH-HHhcCCH--H
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAG-MMLNGRS--E 95 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~-~~~~~~~--~ 95 (394)
+...|+++.|...++...+.. +.+...+..+..++...|++++|+..|++... +.+...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788999999999988776 66788899999999999999999999998765 4567778888888 7788998 9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 143 (394)
+|...+++..+.... +...+..+...|...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999998887433 67788888999999999999999999988753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=71.92 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
..+..+...+...|++++|...|++... +.+...+..+...+...|++++|...+++..+... .+..++..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 3455566666667777777777766543 34556666666777777777777777777666532 25666677777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccchhhHHHHHHHHHH
Q 016128 125 QLGMRFEAFKLFEKMQSTGMVPSLKCVT--SVLSACADLSALKLGKETHGHVI 175 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 175 (394)
..|++++|...|++..+.. +.+...+. .....+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766542 22333332 23333556677777777766554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=71.92 Aligned_cols=98 Identities=10% Similarity=0.013 Sum_probs=75.4
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NPTPFVILSN 360 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 360 (394)
+...+..+...+...|++++|...|++..+ |+.. .+..+..++...|++++|+..++++.+..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 344566667777777788888777777654 4444 7777888888888888888888888888888 7788888888
Q ss_pred HHhhc-CCcccHHHHHHHhhhccc
Q 016128 361 IYAGL-GRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 361 ~~~~~-g~~~~a~~~~~~m~~~~~ 383 (394)
++.+. |++++|.+.++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888876543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.2e-09 Score=74.73 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=48.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+..+...+...|++++|...|+...+. .+.+...+..+..+|.+.|++++|...+++..+ |+.. .|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455555555555555555555442 122344555555555555555555555555443 3333 5555555555
Q ss_pred hcCCchHHHHHHHHHHhhC
Q 016128 330 CHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~ 348 (394)
..|++++|+..++++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 5555555555555555555
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=75.03 Aligned_cols=97 Identities=14% Similarity=-0.042 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..|++..+..+. ++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 344555666666666666666666666554 345556666666666666666666666666665322 45566666666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 016128 123 FSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~ 142 (394)
|...|++++|+..|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=74.47 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPT-------PFVILS 359 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 359 (394)
+..+...+.+.|++++|+..|++..+ |+.. .|..+..+|...|++++|++.+++++++.|.++. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 44455555555555555555555544 4444 5555555555666666666666665555544432 344445
Q ss_pred HHHhhcCCcccHHHHHHHhhh
Q 016128 360 NIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.++...|++++|++.+++...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555566666666555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-06 Score=70.76 Aligned_cols=172 Identities=9% Similarity=0.032 Sum_probs=118.5
Q ss_pred HhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-CHHH
Q 016128 57 LKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNG-RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQL-G-MRFE 131 (394)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~-~~~~ 131 (394)
.+.+..++|+++++.+.. +.+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 344555688999888775 345566777777777777 599999999999987655 778888877777666 6 7889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----
Q 016128 132 AFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK--------LGKETHGHVIRADLNKDESMATALISMYMKCGQ----- 198 (394)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 198 (394)
++++++++.+.. +-|...|+.-..++.+.+.++ ++.+.++++++.++ -|...++.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccch
Confidence 999999988764 346777776666666666665 77777777777653 366666666666666654
Q ss_pred --chHHHHHHHHhh-cCCCChhhHHHHHHHHhhcCC
Q 016128 199 --PSWARRFFDQFE-IKPDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 199 --~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 231 (394)
++++.+.+++.. ..|.|...|+-+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 455666665533 336666666666555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-09 Score=74.04 Aligned_cols=94 Identities=11% Similarity=-0.104 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
.+..+...+.+.|++++|...|++..+ |+.. .|..+..++...|++++|+..++++.+++|.++..+..++.++.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455667788899999999999998876 7666 8889999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhhcc
Q 016128 366 GRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 366 g~~~~a~~~~~~m~~~~ 382 (394)
|++++|+..+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-08 Score=80.50 Aligned_cols=185 Identities=9% Similarity=-0.070 Sum_probs=94.1
Q ss_pred hhHhHHHHHHHHHHHHhhhcCCchHHHHHH-------HHHHHhcCChhHHHHHHHHhcc-CC-------C----------
Q 016128 23 SLLYLQFGRQVHGLTLKIEKQSDTMIGTAL-------VDMYLKCGCLPCAHNVFQELKG-SR-------N---------- 77 (394)
Q Consensus 23 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~-~~-------~---------- 77 (394)
..++...|.+.|..+.+.. |.....|..+ ...+.+.++..+++..+.+-.. .| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566777777777777665 4556666665 4555555555555555544332 11 1
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHH
Q 016128 78 -----ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS--LKC 150 (394)
Q Consensus 78 -----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~ 150 (394)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0112334555666666666666666665542 332244445556666666666666665433221 110 123
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHhhc
Q 016128 151 VTSVLSACADLSALKLGKETHGHVIRADLNKD--ESMATALISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555543222122 22333444455555555555555555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-06 Score=71.98 Aligned_cols=194 Identities=13% Similarity=0.011 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--chHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCC-hhhHHHHHH
Q 016128 165 KLGKETHGHVIRADLNKDESMATALISMYMKCGQ--PSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGE-YESAVEIFD 240 (394)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 240 (394)
+++..+++.+..... .+..+|+.-...+...|+ ++++..+++.+... |.|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 444444444444332 244444444444444442 44555555554332 4445555554444444454 355555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHcc--------------CCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhc------
Q 016128 241 LMQQEKVKPNSASFVAVLSACGHA--------------GHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRS------ 300 (394)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 300 (394)
++.+..+. |...|+.....+... +.++++++.+...... .+-|...|+.+-..+.+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 55554322 444444433333322 3355566666555542 233444444333333332
Q ss_pred -----CcHHHHHHHHHhCCC--CChh-hHHHHHH---HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 301 -----GRLDEARELIRELPE--PTVS-VYHSLLG---ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 301 -----g~~~~a~~~~~~~~~--~~~~-~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
+.++++++.++++.+ |+.. .+..++. +....|..+++...+.++.+++|....-|..+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 456777777777776 6654 3333221 222356777888888888888887777676665443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-07 Score=66.85 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGF 123 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 123 (394)
...+..+...+...|++++|.+.|+++.. +.+..++..+...+...|++++|...++++..... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 34455555555555666666666555443 23444555555666666666666666666555422 2455556666666
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 016128 124 SQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~ 142 (394)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=74.39 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQE----KVKP--NSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
+..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555544332 1011 12234444455555555555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-08 Score=69.05 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGAC 328 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~ 328 (394)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+ |+.. .+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555666666666666665542 223455555566666666666666666665544 4433 666666677
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 329 WCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777666555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=84.64 Aligned_cols=147 Identities=8% Similarity=-0.049 Sum_probs=89.8
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC----------------hhHHHHHHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN----------------ILTWNTMIAG 87 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------~~~~~~ll~~ 87 (394)
++++.|.+.++...+.. +.+...+..+...+.+.|++++|+..|++... .|+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444332 23455667777777777777777777777654 232 3566666677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG 167 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 167 (394)
+.+.|++++|+..+++..+.... +..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665322 56666666777777777777777777666542 23455566666666666666655
Q ss_pred -HHHHHHH
Q 016128 168 -KETHGHV 174 (394)
Q Consensus 168 -~~~~~~~ 174 (394)
...++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=71.26 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
..+..+...+.+.|++++|...|++..+ |+.. .|..+..++...|++++|+..++++.+.+|.++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4455666677777777777777777665 5554 777777777777777777777777777777777777777777777
Q ss_pred cCCcccHHHHHHHhhhc
Q 016128 365 LGRWEDVGRIRQMINDR 381 (394)
Q Consensus 365 ~g~~~~a~~~~~~m~~~ 381 (394)
.|++++|+..+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 77777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-08 Score=72.93 Aligned_cols=99 Identities=7% Similarity=-0.171 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLG 326 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~ 326 (394)
+...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++... |+.. .+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666666666666666666666542 233455666666666666666666666666554 4444 6666666
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCC
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
++...|++++|+..++++.+..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-08 Score=73.55 Aligned_cols=108 Identities=16% Similarity=0.020 Sum_probs=80.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLG 326 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~ 326 (394)
+...+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..|++..+ |+.. .|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455666667777777777777777777653 233566777777778888888888888877765 5555 8888888
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILS 359 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (394)
++...|++++|+..|+++.++.|.++..+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888999999999998888888887654443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=73.57 Aligned_cols=95 Identities=11% Similarity=-0.063 Sum_probs=72.7
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+.+.|++++|...|++... |+.. .|..+..++...|++++|+..|+++.+.+|.++..+..++.++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34555666777788888888888877765 5555 77777788888888888888888888888888888888888888
Q ss_pred hcCCcccHHHHHHHhhhc
Q 016128 364 GLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 364 ~~g~~~~a~~~~~~m~~~ 381 (394)
..|++++|+..+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=68.77 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 45 DTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
+...+..+...+...|++++|...|++... +.+...+..+...+...|++++|...++....... .+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 344555566666666666666666666543 33455566666666666677777666666665532 245566666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA 163 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 163 (394)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 677777777777776666542 2244555555555555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=76.70 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=89.9
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
.+...+..+...+.+.|++++|+..|++..+ |+.. .|..+..++...|++++|+..++++++++|.++..+..++.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456788888999999999999999999886 6666 999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccHHHHHHHhhhcc
Q 016128 362 YAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 362 ~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.+.|++++|+..+++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999988753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-07 Score=73.56 Aligned_cols=131 Identities=10% Similarity=0.009 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHc----CCC--C
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRA----DLN--K 181 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 181 (394)
..++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+. +.. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444555555555555555555444321 1111 1223333444444444444444444443322 000 0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCCh----hhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 182 DESMATALISMYMKCGQPSWARRFFDQFEIK---PDDP----AFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
....+..+...+...|++++|...+++.... ..++ .++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1223344445555555555555555443211 1111 123445555555666666665555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=68.43 Aligned_cols=116 Identities=8% Similarity=-0.010 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMI 120 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 120 (394)
+.+...+..+...+.+.|++++|...|++... +.+...+..+...+...|++++|+..+++..+... .+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 34455666666677777777777777776554 33556666666777777777777777777666532 2566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 121 SGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
.++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 77777777777777777766542 2233444455544443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=69.64 Aligned_cols=111 Identities=14% Similarity=-0.084 Sum_probs=74.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHH
Q 016128 250 NSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYH 322 (394)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~ 322 (394)
+...+..+...+...|++++|...|+...+. .|+ ...+..+...|...|++++|...+++..+ |+.. .+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455556666666666677776666666532 344 45566666677777777777777766654 4444 677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.+..++...|++++|...++++.+..|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777778888888888888888888877766666655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-08 Score=71.15 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=50.4
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
+...+..+...+...|++++|...|++... |+.. .|..+..++...|++++|+..++++.+..|.++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344455555555555555555555555443 3333 5555555555555555555555555555555555555555555
Q ss_pred hhcCCcccHHHHHHHhhh
Q 016128 363 AGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 363 ~~~g~~~~a~~~~~~m~~ 380 (394)
...|++++|+..++++.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=74.39 Aligned_cols=147 Identities=12% Similarity=-0.036 Sum_probs=76.9
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCCh----------------hH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNI----------------LT 80 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----------------~~ 80 (394)
......|+++.+.+.++.-.... ......+..+...+.+.|++++|+..|++... +.+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444566666666665433222 22445566666777777777777777776653 1122 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD 160 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 160 (394)
|..+..++.+.|++++|+..++...+... .+..++..+..+|...|++++|+..|++..+.. +-+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 55566666666666666666666665522 245566666666666666666666666665542 2234445555555554
Q ss_pred cchhhHHH
Q 016128 161 LSALKLGK 168 (394)
Q Consensus 161 ~~~~~~a~ 168 (394)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-07 Score=65.09 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--hh-hHHHHHH
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT--VS-VYHSLLG 326 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~-~~~~l~~ 326 (394)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...+++..+ |+ .. .+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444555555556666666666555542 123445555566666666666666666665544 44 33 6667777
Q ss_pred HHHhc-CCchHHHHHHHHHHhhCCCCC
Q 016128 327 ACWCH-LNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 327 ~~~~~-g~~~~a~~~~~~~~~~~~~~~ 352 (394)
++... |++++|.+.++++....|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777776553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=84.17 Aligned_cols=128 Identities=11% Similarity=-0.058 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-------------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C
Q 016128 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-------------KQEHFGCMVDLLGRSGRLDEARELIRELPE--P 316 (394)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 316 (394)
..+..+...+.+.|++++|...|++..+...-.+ ....|..+..+|.+.|++++|+..+++..+ |
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455555566666666666666666554211111 046778888889999999999999998876 6
Q ss_pred Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHH-HHHHhh
Q 016128 317 TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGR-IRQMIN 379 (394)
Q Consensus 317 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 379 (394)
+.. .|..+..+|...|++++|+..|+++.++.|.+..++..+..++.+.|+++++.+ .++.|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 888999999999999999999999999999999999999999999998887764 444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.64 E-value=6.5e-08 Score=86.74 Aligned_cols=117 Identities=8% Similarity=-0.079 Sum_probs=88.3
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS 334 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 334 (394)
...+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|...+++..+ |+.. .|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33455667777777777777653 233466777777788888888888888877765 5555 888888999999999
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHH--HhhcCCcccHHHHHH
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNI--YAGLGRWEDVGRIRQ 376 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 376 (394)
++|++.++++.+..|.++..+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999888888887 888899999999888
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=60.82 Aligned_cols=95 Identities=15% Similarity=-0.008 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016128 47 MIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS 124 (394)
Q Consensus 47 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 124 (394)
..+..+...+...|++++|...|++... +.+...+..+...+...|++++|...+++..+.... +...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3444555555556666666666655443 234455555556666666666666666665554221 4555666666666
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 016128 125 QLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~ 142 (394)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=68.77 Aligned_cols=98 Identities=15% Similarity=0.007 Sum_probs=89.1
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTV---S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
.+...+..+...+...|++++|...|++..+ |+. . .+..+..++...|++++|+..++++.+..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4567788889999999999999999999876 664 4 888999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccHHHHHHHhhhcc
Q 016128 359 SNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 359 ~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-07 Score=81.06 Aligned_cols=161 Identities=9% Similarity=-0.104 Sum_probs=79.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHh----hHHHHHHHHHccCCHHHHHHHHHHchhcC---CCCC-CHhh
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSA----SFVAVLSACGHAGHVDKALQIFTMMDDDF---GLKP-KQEH 289 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 289 (394)
+..+...|...|++++|.+.+.++...- ..++.. +.+.+...+...|+++++..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555556666666665555543311 011111 11222222334455666655555443210 1111 1334
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CC-----c
Q 016128 290 FGCMVDLLGRSGRLDEARELIRELPE--------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPE--NP-----T 353 (394)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~-----~ 353 (394)
+..+...|...|++++|..++++... +... ++..++..|...|++++|..+++++....+. ++ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 55566666666666666666554432 2222 5666666666667777776666666654311 11 2
Q ss_pred hHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 354 PFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 354 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555666666666666665554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=67.30 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=58.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC--------hhhHHH
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT--------VSVYHS 323 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--------~~~~~~ 323 (394)
+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++... |+ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444444555555555555554432 122344444555555555555555555554443 11 225666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
+..++...|++++|.+.++++.+..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 67777777777777777777777766 4555555544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=67.65 Aligned_cols=180 Identities=13% Similarity=0.024 Sum_probs=132.4
Q ss_pred chHHHHHHHHhhc-CCCChhhHHHHHHHHhhcC--ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC-HHHHHHHH
Q 016128 199 PSWARRFFDQFEI-KPDDPAFWNAMISGYGRNG--EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGH-VDKALQIF 274 (394)
Q Consensus 199 ~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 274 (394)
++++..+++.+.. .|.+..+|+.-...+...+ ++++++.+++++.+.... |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677888877654 4788888998888888888 489999999999998644 77888877777777887 68999999
Q ss_pred HHchhcCCCCCCHhhHHHHHHHHHhc--------------CcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc------
Q 016128 275 TMMDDDFGLKPKQEHFGCMVDLLGRS--------------GRLDEARELIRELPE--PTVS-VYHSLLGACWCH------ 331 (394)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~------ 331 (394)
..+.+. -+-|...|+.....+.+. +.++++++.+.+... |++. .|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 345666676665555544 568889999988876 7777 777555444443
Q ss_pred -----CCchHHHHHHHHHHhhCCCCCchHHHHHHHH---hhcCCcccHHHHHHHhhhc
Q 016128 332 -----LNSDLGEEMAMKLQEMEPENPTPFVILSNIY---AGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 332 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 381 (394)
+.++++++.++++.+..|++.-++..++... ...|..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3578999999999999998844443333221 2456777888888888754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-06 Score=62.50 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHHHH
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF--KPD----PATWNSM 119 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l 119 (394)
.+..+...+.+.|++++|+..|++... +.+...|+.+..+|.+.|++++|++.+++..+... .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555555443 33444555555555555555555555555544211 111 1244445
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=67.57 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=73.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH---hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CCh---h-hHHHH
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ---EHFGCMVDLLGRSGRLDEARELIRELPE--PTV---S-VYHSL 324 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~-~~~~l 324 (394)
+..+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...|++... |+. . .+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 344566777788888888888887764 12222 4666777788888888888888887765 554 3 67777
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 358 (394)
..++...|++++|...++++.+..|.++......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 7888888888888888888888887765544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=68.73 Aligned_cols=61 Identities=15% Similarity=-0.012 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhh-------CCCCCchH----HHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEM-------EPENPTPF----VILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555566666666666666555 66665566 6666666666666666666665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=66.24 Aligned_cols=96 Identities=9% Similarity=-0.053 Sum_probs=58.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHh
Q 016128 254 FVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWC 330 (394)
Q Consensus 254 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~ 330 (394)
+..+...+.+.|++++|...++...+. -+.+...+..+..++...|++++|+..|++..+ |+.. .+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344455566666777777766666642 233455666666666677777777777766654 5544 66667777777
Q ss_pred cCCchHHHHHHHHHHhhCCCC
Q 016128 331 HLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 331 ~g~~~~a~~~~~~~~~~~~~~ 351 (394)
.|++++|+..++++.+..|.+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-06 Score=75.46 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=131.0
Q ss_pred HcCC-chHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCC----------hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 195 KCGQ-PSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGE----------YESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 195 ~~g~-~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
+.|. .++|.+.++.+... |.+...|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3344 35677777776544 5666667776666666666 78888888888877544 6677777777777
Q ss_pred ccC--CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC-cHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc-----
Q 016128 263 HAG--HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG-RLDEARELIRELPE--PTVS-VYHSLLGACWCH----- 331 (394)
Q Consensus 263 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~----- 331 (394)
+.+ +++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++++.+ |+.. .|+.....+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 778 678888888888864 2345666776666677778 88889999888887 5555 787777666553
Q ss_pred ---------CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCccc
Q 016128 332 ---------LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWED 370 (394)
Q Consensus 332 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (394)
+.++++++.+.++...+|.+..+|..+..++.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-07 Score=64.55 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=48.5
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHH
Q 016128 221 AMISGYGRNGEYESAVEIFDLMQQEKVKPNS---ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMV 294 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 294 (394)
.+...+...|++++|+..|++..+.... +. ..+..+..++...|++++|...++.+.+. .+.+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 3444555566666666666665554211 12 34455555555666666666666655543 1111 34455555
Q ss_pred HHHHhcCcHHHHHHHHHhCCC
Q 016128 295 DLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.++.+.|++++|...|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=63.26 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHHHHH
Q 016128 49 GTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF--KPD----PATWNSMI 120 (394)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l~ 120 (394)
+..+...+...|++++|...|++... +.+...+..+...+...|++++|...+++...... .++ ..++..+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 34444444444555555555444432 22334444444455555555555555554444311 111 44455555
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 016128 121 SGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~ 141 (394)
.++...|++++|...|++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.3e-05 Score=66.49 Aligned_cols=192 Identities=8% Similarity=-0.123 Sum_probs=124.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcc-CCC------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC
Q 016128 53 VDMYLKCGCLPCAHNVFQELKG-SRN------------------ILTWNTMIAGMMLNGRSEKAMELFEGLAHE-GFKPD 112 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~-~~~------------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 112 (394)
...+.+.|++++|++.|..+.. .++ ..++..+...|...|++++|.+.+...... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778899999998888764 111 023667788888888888888888877653 11122
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCC----
Q 016128 113 P----ATWNSMISGFSQLGMRFEAFKLFEKMQS----TGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADL---- 179 (394)
Q Consensus 113 ~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 179 (394)
. .+.+.+...+...|+++.|..++..... .+..+. ..++..+...+...|++++|..+++++...-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1233334445566788888888877653 222222 45667778888888888888888887654311
Q ss_pred -CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC----CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHH
Q 016128 180 -NKDESMATALISMYMKCGQPSWARRFFDQFEIK----PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQ 244 (394)
Q Consensus 180 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (394)
.....++..++..|...|++++|..++++.... +.+ ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112456777778888888888888888765332 112 12356666677778888888877776644
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.5e-08 Score=82.29 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 216 PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 444777778888889999999999888775 344331 22333344333222 1 136778888
Q ss_pred HHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH-hhcCCcccH
Q 016128 296 LLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY-AGLGRWEDV 371 (394)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a 371 (394)
+|.+.|++++|+..+++..+ |+.. .|..+..++...|++++|+..|+++.++.|.++.++..+..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988876 6655 8899999999999999999999999999999988888888773 455677888
Q ss_pred HHHHHHhhhcc
Q 016128 372 GRIRQMINDRQ 382 (394)
Q Consensus 372 ~~~~~~m~~~~ 382 (394)
...++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=70.53 Aligned_cols=77 Identities=18% Similarity=0.056 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC-chHHHHHHHH
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP-TPFVILSNIY 362 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~ 362 (394)
...+..+..+|.+.|++++|+..+++..+ |+.. .|..+..++...|++++|...|+++.+++|.++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888776 6666 888888899999999999999999999998887 4444444443
Q ss_pred h
Q 016128 363 A 363 (394)
Q Consensus 363 ~ 363 (394)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.4e-08 Score=68.63 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHchhcCC--CCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHH
Q 016128 264 AGHVDKALQIFTMMDDDFG--LKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~ 338 (394)
.|++++|+..|++..+. + -+.+...+..+...|...|++++|...|++..+ |+.. .+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35556666666666542 1 122334555666666666666666666666654 5555 6666777777777777777
Q ss_pred HHHHHHHhhCCCCCch
Q 016128 339 EMAMKLQEMEPENPTP 354 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~ 354 (394)
..++++.+..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777666543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-07 Score=79.11 Aligned_cols=88 Identities=14% Similarity=-0.020 Sum_probs=77.6
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
+...|..+..+|.+.|++++|+..+++..+ |+.. .|..+..++...|++++|+..|+++.++.|.++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356788888899999999999999998887 6666 8999999999999999999999999999999999999999998
Q ss_pred hhcCCcccHHH
Q 016128 363 AGLGRWEDVGR 373 (394)
Q Consensus 363 ~~~g~~~~a~~ 373 (394)
...++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-08 Score=67.84 Aligned_cols=93 Identities=13% Similarity=-0.074 Sum_probs=78.1
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC------CchHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN------PTPFV 356 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 356 (394)
+...+..+...+...|++++|...|++..+ |+.. .+..+..++...|++++|+..++++.+..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888889999999999888776 6555 88899999999999999999999999999988 67788
Q ss_pred HHHHHHhhcCCcccHHHHHHHh
Q 016128 357 ILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~~~~m 378 (394)
.++.++...|+++.|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888889888887766554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.7e-07 Score=68.49 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEP------ENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
++..+...+...|++++|.+.++++.+..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555566666666666666666655421 1123456667777777777777777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-07 Score=68.66 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.|..+..++...|++++|+..++++++++|.++.+|..++.++...|++++|...+++..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999999999999999999999999988754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-07 Score=81.23 Aligned_cols=124 Identities=10% Similarity=0.108 Sum_probs=95.4
Q ss_pred HHHccCCHHHHHHHHHHchhcC--CCCC----CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHH
Q 016128 260 ACGHAGHVDKALQIFTMMDDDF--GLKP----KQEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-VYH 322 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~ 322 (394)
.+...|++++|+.++++..+.. -+.+ ...+++.|...|...|++++|..++++..+ |+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557889999988887765431 1122 235678888899999999999888887764 4555 899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCch---HHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQE-----MEPENPTP---FVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
.|...|...|++++|+.+++++.+ .+|++|.+ ...+..++...+.+++|+.++.++++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887 45766655 45667778888999999999999987543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.9e-07 Score=66.38 Aligned_cols=96 Identities=13% Similarity=-0.039 Sum_probs=51.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC-----C---Chh-
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE-----P---TVS- 319 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~- 319 (394)
++..+...+...|++++|...++...+...-..+ ...+..+...+...|++++|...+++..+ . ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555544321000011 23444555556666666666665555442 1 111
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
++..+...+...|++++|.+.++++.+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777777788888888877776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=78.41 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=78.9
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVD 268 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (394)
...+.+.|++++|.+.|++.... |.+...|..+..+|.+.|++++|++.+++..+... .+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34456677888888888775443 55677778888888888888888888888777642 25667777777888888888
Q ss_pred HHHHHHHHchhcCCCCCCHhhHHHHHHH--HHhcCcHHHHHHHHH
Q 016128 269 KALQIFTMMDDDFGLKPKQEHFGCMVDL--LGRSGRLDEARELIR 311 (394)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 311 (394)
+|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888776541 2223344444444 677778888887777
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=78.61 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCC---------------hhHHHHHHHHH
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRN---------------ILTWNTMIAGM 88 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---------------~~~~~~ll~~~ 88 (394)
+++.|.+.|+...+.. +.....+..+...+.+.|++++|+..|++... +.+ ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554433322 23455666777777777777777777777654 222 35566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
.+.|++++|+..+++..+.... +..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++...++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665322 55666666666666666666666666666542 123344555555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=74.44 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
...+..+...+.+.|++++|...|++.....++.. .+...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677788888899999999999999765323221 1223333344332221 136777888888
Q ss_pred ccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHH-HHhcCCchHHH
Q 016128 263 HAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGA-CWCHLNSDLGE 338 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~-~~~~g~~~~a~ 338 (394)
+.|++++|+..++...+. .+.+...+..+..+|...|++++|...|++..+ |+.. .+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888763 234667888888889999999999999998876 5555 66666555 23456677888
Q ss_pred HHHHHHHhhCCCCC
Q 016128 339 EMAMKLQEMEPENP 352 (394)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (394)
..|+++....|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 88888888777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=64.84 Aligned_cols=72 Identities=14% Similarity=-0.083 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCC---------CCChh-hH----HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELP---------EPTVS-VY----HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
.|..+..++.+.|++++|+..+++.. .|+.. .| .....++...|++++|+..|+++.++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56666666667777666666655554 36666 88 899999999999999999999999999988776
Q ss_pred HHHHHH
Q 016128 355 FVILSN 360 (394)
Q Consensus 355 ~~~l~~ 360 (394)
...+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=61.51 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHhhcC----CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 016128 197 GQPSWARRFFDQFEIK----PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 197 g~~~~a~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
|++++|+..|++.... |.+...+..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444444332 222333444444444445555555555444443211 33444444444444455555554
Q ss_pred HHHHch
Q 016128 273 IFTMMD 278 (394)
Q Consensus 273 ~~~~~~ 278 (394)
.++...
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=58.89 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
.+..+..++...|++++|+..|+++.+.+|.++.+|..++.+|...|++++|++.+++..+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666666666666666666666666666666666666666666655543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-06 Score=57.00 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=63.0
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
...+..+...+...|++++|...|++..+ |+.. .+..+..++...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566677777888888888888877765 5555 78888888888899999999999998888888888888887776
Q ss_pred hcC
Q 016128 364 GLG 366 (394)
Q Consensus 364 ~~g 366 (394)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-05 Score=68.86 Aligned_cols=91 Identities=11% Similarity=-0.022 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 156 (394)
+...|..+..+|.+.|++++|+..+++..+.... +..+|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456777778888888888888888888776332 57777788888888888888888888877653 235566666677
Q ss_pred HhhccchhhHHHH
Q 016128 157 ACADLSALKLGKE 169 (394)
Q Consensus 157 ~~~~~~~~~~a~~ 169 (394)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-05 Score=56.11 Aligned_cols=115 Identities=10% Similarity=-0.151 Sum_probs=91.3
Q ss_pred hhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHh----cCCHHHH
Q 016128 22 ASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML----NGRSEKA 97 (394)
Q Consensus 22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 97 (394)
...+++++|.+.|+...+.| .++.. +...|...+.+++|.+.|++.....+...+..|...|.. .+++++|
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34578899999999988887 33333 777777778888899999888767778888888888887 7888999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCC
Q 016128 98 MELFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTGM 144 (394)
Q Consensus 98 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~ 144 (394)
...|++..+.| ++..+..|...|.. .+++++|..+|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988888764 67777888888887 7888888888888887763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00014 Score=66.50 Aligned_cols=170 Identities=8% Similarity=-0.014 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHhcc--CCChhHHHHHHHHHHhcC--
Q 016128 27 LQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC----------LPCAHNVFQELKG--SRNILTWNTMIAGMMLNG-- 92 (394)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~-- 92 (394)
-++|.+.++.++..+ +-+..+|+.--.++...|+ ++++++.++.+.. +.+..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 346777888877766 5566677766666666666 7788888877765 456667777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----------
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG-MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL---------- 161 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---------- 161 (394)
+++++++.++++.+.... +..+|+.-..++.+.| .++++++.++++.+.. +-|...|+....++.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888877554 7777777777777777 7778888887777654 33566666555554432
Q ss_pred ----chhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCch
Q 016128 162 ----SALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPS 200 (394)
Q Consensus 162 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 200 (394)
+.++++.+.+..++.... -+...|..+...+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCcc
Confidence 556777777777766543 25566666666665555533
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-06 Score=59.21 Aligned_cols=80 Identities=10% Similarity=-0.085 Sum_probs=57.3
Q ss_pred HHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 269 KALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
.+...++...+ ..+.+...+..+...|...|++++|...|++... |+.. .|..+..++...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666654 2234566777777788888888888888877765 5555 77777788888888888888888887
Q ss_pred hhCCC
Q 016128 346 EMEPE 350 (394)
Q Consensus 346 ~~~~~ 350 (394)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.7e-07 Score=65.07 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=45.8
Q ss_pred cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc----------hHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 016128 300 SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS----------DLGEEMAMKLQEMEPENPTPFVILSNIYAGLG 366 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (394)
.+.+++|.+.+++..+ |+.. .|..+..++...+++ ++|+..|+++++++|.+..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3444555555554443 4444 555555555444433 36666666666666666666666666666553
Q ss_pred -----------CcccHHHHHHHhhhc
Q 016128 367 -----------RWEDVGRIRQMINDR 381 (394)
Q Consensus 367 -----------~~~~a~~~~~~m~~~ 381 (394)
++++|++.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 566666666666543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-05 Score=52.30 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=55.4
Q ss_pred CChh-hHHHHHHHHHhcCC---chHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 316 PTVS-VYHSLLGACWCHLN---SDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 316 ~~~~-~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
|+.. .+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3344 67777777754444 689999999999999999999999999999999999999999998876544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=1e-05 Score=72.10 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=90.8
Q ss_pred HHhhcCChhhHHHHHHHHHHcC---CCCC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcC----CC-CCC-HhhHH
Q 016128 225 GYGRNGEYESAVEIFDLMQQEK---VKPN----SASFVAVLSACGHAGHVDKALQIFTMMDDDF----GL-KPK-QEHFG 291 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~-~~~~~ 291 (394)
.+...|++++|+.++++..+.. +.|+ ..+++.|...|...|++++|+.++++....+ |- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567889999999888775431 2222 3578888889999999999988888765421 21 222 35678
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE----------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEM 347 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 347 (394)
.|...|...|++++|..++++..+ |+.. +.+.+..++...+.+++|+..|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999888887764 3334 6677778888889999999999988773
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.5e-05 Score=52.92 Aligned_cols=65 Identities=11% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 213 PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
|.++..+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|...|+...
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555555444321 133444444455555555555555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00037 Score=50.53 Aligned_cols=110 Identities=8% Similarity=-0.127 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHH
Q 016128 128 MRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWAR 203 (394)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 203 (394)
++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555444 12221 4444444444445555555554443 34444445555554 44555555
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHhh----cCChhhHHHHHHHHHHcC
Q 016128 204 RFFDQFEIKPDDPAFWNAMISGYGR----NGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 246 (394)
.+|++.... .++..+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555554433 344444555555554 455555555555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.4e-05 Score=55.52 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 217 AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334555555555566666666666555542 2244555555555556666666666665555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=7.5e-05 Score=54.79 Aligned_cols=86 Identities=16% Similarity=0.005 Sum_probs=59.1
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChh----------HHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLP----------CAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
..+.+.+++|.+.++...+.. |.+...|..+..++...++++ +|+..|++... +.+..+|..+..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 346778888999999888877 678888888888888877654 66666666554 33455666666666
Q ss_pred HhcC-----------CHHHHHHHHHHHHhc
Q 016128 89 MLNG-----------RSEKAMELFEGLAHE 107 (394)
Q Consensus 89 ~~~~-----------~~~~a~~~~~~m~~~ 107 (394)
...| ++++|++.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6553 555566666555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.8e-05 Score=69.37 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=51.6
Q ss_pred cCcHHHHHHHHHhCCC----------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCc---hHHHHHH
Q 016128 300 SGRLDEARELIRELPE----------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQE-----MEPENPT---PFVILSN 360 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~ 360 (394)
.|++++|..++++..+ |+.. +++.+..+|...|++++|+.+++++++ .+|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3556666665554432 3333 677777777777777777777777765 2344443 3666777
Q ss_pred HHhhcCCcccHHHHHHHhhh
Q 016128 361 IYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 361 ~~~~~g~~~~a~~~~~~m~~ 380 (394)
+|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00023 Score=46.97 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+..+...+...|++++|+..|++..+... .+..++..+..++...|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33333444444444444444444443321 1333444444444444444444444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5e-05 Score=66.72 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCc---hHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQE-----MEPENPT---PFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
+++.++.+|...|++++|+.+++++++ .+|.+|. .++.|+.+|...|++++|+.++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444444444444444444444443 1222222 2444444444455555544444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=49.75 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQ 243 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (394)
...+..+..+|...|++++|...|++.... |.++..|..+..+|...|++++|+..|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444455555555555555443322 3334444444445555555555555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0015 Score=55.18 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 77 NILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444444444455555555555544442 3444444444444455555555555544444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.70 E-value=4e-05 Score=51.91 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=55.7
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CCh-h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTV-S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
....+.+.|++++|...|++..+ |+. . .+..+..++...|++++|+..|+++.+.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 34566777888888888877765 433 4 67777888888888888888888888888888776632 344
Q ss_pred ccHHHHHHHhh
Q 016128 369 EDVGRIRQMIN 379 (394)
Q Consensus 369 ~~a~~~~~~m~ 379 (394)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=64.08 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=77.3
Q ss_pred HHHHHccCCHHHHHHHHHHchhcC--CCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-h
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDF--GLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-V 320 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~ 320 (394)
+..+...|++++|+.++++..+.. -+.|+ ..+++.+...|...|++++|+.++++... |+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998886532 12232 35678888999999999999998887764 5555 8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh-----hCCCCCchHHH
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQE-----MEPENPTPFVI 357 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 357 (394)
++.|...|...|++++|+.+++++.+ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 99999999999999999999999987 45777655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.4e-05 Score=64.87 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=71.4
Q ss_pred ccCCHHHHHHHHHHchhcC--CCCCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC----------CChh-hHHHHH
Q 016128 263 HAGHVDKALQIFTMMDDDF--GLKPK----QEHFGCMVDLLGRSGRLDEARELIRELPE----------PTVS-VYHSLL 325 (394)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~-~~~~l~ 325 (394)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..++++..+ |+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888887765421 12222 35678889999999999999998888764 5555 899999
Q ss_pred HHHHhcCCchHHHHHHHHHHh-----hCCCCCchH
Q 016128 326 GACWCHLNSDLGEEMAMKLQE-----MEPENPTPF 355 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 355 (394)
..|...|++++|+.+++++.+ .+|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 456665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0083 Score=57.62 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhh
Q 016128 87 GMMLNGRSEKAME-LFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALK 165 (394)
Q Consensus 87 ~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (394)
.....+++++|.+ ++.. .|+......++..+.+.|.++.|+++.+. |. .- .......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHH
Confidence 3345667777665 4411 11122235566666677777776654421 10 00 12233455666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH
Q 016128 166 LGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI 238 (394)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 238 (394)
.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHH
Confidence 665554321 2455666666666666666666666665544 34444444444444443333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00077 Score=56.89 Aligned_cols=138 Identities=10% Similarity=-0.032 Sum_probs=82.0
Q ss_pred CCChhhHHHHHHHHhh--c---CChhhHHHHHHHHHHcCCCCC-HhhHHHHHHHHHc---cC--C---HHHHHHHHHHch
Q 016128 213 PDDPAFWNAMISGYGR--N---GEYESAVEIFDLMQQEKVKPN-SASFVAVLSACGH---AG--H---VDKALQIFTMMD 278 (394)
Q Consensus 213 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~~ 278 (394)
|.++..|...+++... . .+..+|+.+|++..+. .|+ ...+..+..++.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5667777777765432 2 2346788888888876 343 3444433333321 00 1 111111111111
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 279 DDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
.....+.++.++..+...+...|++++|...++++.. |+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1112355667777777667767888888888887776 5444666777777788888888888888888887553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0068 Score=42.37 Aligned_cols=141 Identities=11% Similarity=0.067 Sum_probs=103.3
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (394)
+.-.|..++..++..+..... +..-|+-+|.-....-+-+-..+.++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 445688888888888887652 55667777776667777777777777776543332 2344444
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 306 ARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 306 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
....+-.+. .+....+..+..+...|+.+.-.+++..+....+++|..+..++.+|.+.|+..+|.++++++.+.|++
T Consensus 80 Vi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 233355666677888999999999999987777889999999999999999999999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.48 E-value=8.1e-05 Score=50.35 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCc-hHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 324 LLGACWCHLNSDLGEEMAMKLQEMEPENPT-PFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 324 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
....+...|++++|+..++++.+..|.++. .+..++.++...|++++|+..+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999 99999999999999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0096 Score=57.18 Aligned_cols=152 Identities=10% Similarity=-0.024 Sum_probs=86.5
Q ss_pred hhhHhHHHHHH-HHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 016128 22 ASLLYLQFGRQ-VHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMEL 100 (394)
Q Consensus 22 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 100 (394)
...++++.|.+ ++..+ ++......++..+.+.|..++|.++.+. +. .-.......|++++|.++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~----~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD----QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC----HH-----HHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC----cc-----hheehhhhcCCHHHHHHH
Confidence 34567777665 44221 1122236777777788888888765532 11 113345667888888887
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC
Q 016128 101 FEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLN 180 (394)
Q Consensus 101 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 180 (394)
.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+.....|.
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 5432 3677888888888888888888888887743 33344444445555544444443333321
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 181 KDESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
++....+|.+.|++++|.+++.++
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 122233344445555555444433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0019 Score=42.89 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=53.4
Q ss_pred CCCHhhHHHHHHHHHhcCc---HHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 284 KPKQEHFGCMVDLLGRSGR---LDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+.++..+..+..++...++ .++|..++++... |+.. ....+...+...|++++|+..|+++.+.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566777777777765544 6888888888876 7776 78888888888999999999999998888873
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0019 Score=44.06 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=49.3
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
...+..+...+.+.|+++.|...|+...+ ++.. ++..+..++.+.|+++.|...++++.+..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444555556666666666655555432 1223 7888888999999999999999999999998876655
Q ss_pred HH
Q 016128 357 IL 358 (394)
Q Consensus 357 ~l 358 (394)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=53.60 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCC--CC--hh-hHHHHHHHHHh-----cCCchHHHHHHHHHHhhCCCC-CchHHHHHHHHhh-cCCccc
Q 016128 303 LDEARELIRELPE--PT--VS-VYHSLLGACWC-----HLNSDLGEEMAMKLQEMEPEN-PTPFVILSNIYAG-LGRWED 370 (394)
Q Consensus 303 ~~~a~~~~~~~~~--~~--~~-~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~ 370 (394)
...|...+++..+ |+ .. .|..+...|.. -|+.++|.+.|++++++.|.. ..++...+..++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4455566666655 44 22 67777777776 377788888888888877754 7777777777776 477777
Q ss_pred HHHHHHHhhhccccccCC
Q 016128 371 VGRIRQMINDRQLTKLPG 388 (394)
Q Consensus 371 a~~~~~~m~~~~~~~~~~ 388 (394)
|.+.+++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 788877777765553344
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0036 Score=45.42 Aligned_cols=88 Identities=16% Similarity=0.022 Sum_probs=56.3
Q ss_pred HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC---cHHHHHHHHHhCCCCC----hh-hHHHHHHHHHhcCCchHHHH
Q 016128 268 DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG---RLDEARELIRELPEPT----VS-VYHSLLGACWCHLNSDLGEE 339 (394)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~----~~-~~~~l~~~~~~~g~~~~a~~ 339 (394)
..+.+.|.+.... + +++..+...+..++++++ +.++++.+|++..+.+ .. .+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444432 2 256666666666666666 5556666666655422 12 55566677888899999999
Q ss_pred HHHHHHhhCCCCCchHHH
Q 016128 340 MAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (394)
.++.+.+.+|.+..+...
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999987655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.89 E-value=1.3e-06 Score=75.04 Aligned_cols=304 Identities=9% Similarity=0.032 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016128 46 TMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQ 125 (394)
Q Consensus 46 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 125 (394)
+.+|..|..+....+++.+|++.|=+. .|+..|..++....+.|.+++-...+...++..-.| ..=+.|+-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 345555666666666666555544332 344445556666666666666666655444442222 222355666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--------------------------HhhccchhhHHHHHHHHHHHcCC
Q 016128 126 LGMRFEAFKLFEKMQSTGMVPSLKCVTSVLS--------------------------ACADLSALKLGKETHGHVIRADL 179 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~ 179 (394)
.++..+-.+++. .||..-...+.. .+.+.|++..|.+.-+ +
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr---K--- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR---K--- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT---T---
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---h---
Confidence 655544322211 122222333333 3444455444433221 1
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHH
Q 016128 180 NKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLS 259 (394)
Q Consensus 180 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (394)
..++.||..+-.+|...+.+.-|.-.--.+... +.-...++..|-..|.+++.+.+++.-... -+...-.|+-|.-
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 235667777778888888877766555444432 222345667788889999999988887643 2456778888888
Q ss_pred HHHccCCHHHHHHHHHHchhcCCCCC------CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-CChh-hHHHHHHHHHhc
Q 016128 260 ACGHAGHVDKALQIFTMMDDDFGLKP------KQEHFGCMVDLLGRSGRLDEARELIRELPE-PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~l~~~~~~~ 331 (394)
.|++ -+.++..+.++....+-+++- ....|..++-.|.+-.+++.|.. .|.+ |... --..+-....+.
T Consensus 272 LYsK-Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l---tMi~h~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 272 LYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HHHS-SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH---TTTSCHHHHCCGGGGTTTGGGC
T ss_pred HHHh-cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH---HHHhCChhhccHHHHHHHHHHc
Confidence 7876 466777776666554323322 22345556666666666665432 2222 1111 222222333444
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHh
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 378 (394)
.+.+---+...-.+ ...|...+-|+.++...=|..++.++|++.
T Consensus 348 aN~EiyYKAi~FYL---~e~P~lL~DLL~vL~prlDh~RvV~~~~k~ 391 (624)
T 3lvg_A 348 ANVELYYRAIQFYL---EFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 391 (624)
T ss_dssp SCSHHHHHHHHHHT---TSCCTTSHHHHHHHCTTCCSTTTHHHHHTT
T ss_pred chHHHHHHHHHHHH---HhChHHHHHHHHhccccCChHHHHHHHHhc
Confidence 44443222222222 234456677777776666666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.15 Score=41.40 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHH------HHhcCChhHHHHHHHHhcc-CCChhHHHHHHH-HHHhc--CC--
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDM------YLKCGCLPCAHNVFQELKG-SRNILTWNTMIA-GMMLN--GR-- 93 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ll~-~~~~~--~~-- 93 (394)
+...|.+++....+.+. ..|-.. -.+.++..+-.+.+.+... .+....|..++. .++.. |+
T Consensus 102 ~~~RA~~Ly~ra~~y~~-------raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~ 174 (301)
T 3u64_A 102 AYSRARKLYLRGARYAL-------SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSA 174 (301)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChH
Confidence 45566777776665441 111110 1223444444444544441 223345666554 33432 33
Q ss_pred ----HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 94 ----SEKAMELFEGLAHEGFKPD---PATWNSMISGFSQL-----GMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 94 ----~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++..
T Consensus 175 Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred HHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 46777778888776 455 56888888889884 99999999999998864222367777788888874
Q ss_pred -chhhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 016128 162 -SALKLGKETHGHVIRADLN--KDESMATAL 189 (394)
Q Consensus 162 -~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 189 (394)
|+.+++.+.+++....+.. |+....+.+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8999999999999988776 665554433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00062 Score=58.99 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHH
Q 016128 10 NSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMM 89 (394)
Q Consensus 10 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~ 89 (394)
|+..|..++.++.+.|.++.-.+.+....+.. .++.+=+.|+-+|++.+++.+-.++ ...||..-...+.+-|.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEef----l~~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----INGPNNAHIQQVGDRCY 155 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTST----TSCCSSSCTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHH----HcCCCcccHHHHHHHHH
Confidence 55667777777777777777777776655543 3334446777777777776543322 22455555555666666
Q ss_pred hcCCHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 016128 90 LNGRSEKAMELFEGLAHEG--------------------FKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLK 149 (394)
Q Consensus 90 ~~~~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 149 (394)
..|.++.|.-+|..+.... -..++.||-.+-.+|...+++.-|.-.--.++-. |+
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad-- 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD-- 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--
Confidence 6666666665555432210 0115667777777777777766554443333311 11
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---C------CChhhHH
Q 016128 150 CVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK---P------DDPAFWN 220 (394)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~------~~~~~~~ 220 (394)
....++.-|-..|.+++...+++...... .....+|+-|.-.|++- ++++..+.++..-.+ | .....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 12234555667777777777777766432 45778888888877765 455555554433222 1 1234477
Q ss_pred HHHHHHhhcCChhhHHH
Q 016128 221 AMISGYGRNGEYESAVE 237 (394)
Q Consensus 221 ~l~~~~~~~~~~~~a~~ 237 (394)
-++-.|.+-.++|.|..
T Consensus 309 ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcchhHHHHHH
Confidence 77777777777776643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.1 Score=38.81 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 016128 88 MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKM 139 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 139 (394)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 33445555555544433 14445555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.09 Score=36.88 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=29.8
Q ss_pred hcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016128 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 106 (394)
-.|.+++..++..+...+.+..-||-+|--....-+-+-..++++..-+
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk 67 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS 67 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh
Confidence 3577777777777666455555566666666655666655555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.023 Score=41.17 Aligned_cols=82 Identities=11% Similarity=-0.057 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC---ChhHHHHHHHHhcc-C-C--ChhHHHHHHHHHHhcCCHHHH
Q 016128 25 LYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG---CLPCAHNVFQELKG-S-R--NILTWNTMIAGMMLNGRSEKA 97 (394)
Q Consensus 25 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~ll~~~~~~~~~~~a 97 (394)
..+..+.+-|....+.+ +++..+...+..++++.+ ++++++.+|+.+.. . | +...+-.+.-++.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 44555555566555555 456666666666666666 55566666666553 2 2 223334445555666666666
Q ss_pred HHHHHHHHhc
Q 016128 98 MELFEGLAHE 107 (394)
Q Consensus 98 ~~~~~~m~~~ 107 (394)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.63 Score=42.75 Aligned_cols=313 Identities=9% Similarity=-0.041 Sum_probs=166.0
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCch-HHHHHHHHHHHhcCChhHHHHHHHHhccCCCh-hHHHHHHHHHHh
Q 016128 13 TFISVISACASLLYLQFGRQVHGLTLKIEKQSDT-MIGTALVDMYLKCGCLPCAHNVFQELKGSRNI-LTWNTMIAGMML 90 (394)
Q Consensus 13 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ll~~~~~ 90 (394)
.|.....++ +.|++..+.++...+... +..+ ..|..+...+ .....++....+++.+..|-. ..-+..+..+.+
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHh
Confidence 344444443 457777777766554321 2211 1232222211 223567777777776543332 223455677778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH--HH
Q 016128 91 NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL--GK 168 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~ 168 (394)
.+++...+.++.. .+.+...--....+....|+..+|......+-..| ......+..++..+.+.|.+.. ..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 8888877765542 23345444556677778888888887777766554 2234456667777665554332 22
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-----------HHHH-cCCchHHHHHHHHhhcCCCChhh---HHHHHHHHhhcCChh
Q 016128 169 ETHGHVIRADLNKDESMATALIS-----------MYMK-CGQPSWARRFFDQFEIKPDDPAF---WNAMISGYGRNGEYE 233 (394)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~-~g~~~~a~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 233 (394)
.-++.+...| +...-..++. .+.. ..++..+....... +++... +...+.-+.+ .+.+
T Consensus 159 ~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 159 ERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTT---GATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHS---CCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhcc---CCChhhHHHHHHHHHHHHh-cCHH
Confidence 2222223322 1111111111 1110 01222222222221 112211 1122223333 4789
Q ss_pred hHHHHHHHHHHcCCCCCHhhHH----HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 016128 234 SAVEIFDLMQQEKVKPNSASFV----AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309 (394)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (394)
.|...+....+... .+..... .++......+...++...+...... ..+.....-.+....+.|+++.|...
T Consensus 232 ~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 232 NARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999998876542 2333222 2333333445345566666665432 34444455555556678999999999
Q ss_pred HHhCCCCC--hh-hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016128 310 IRELPEPT--VS-VYHSLLGACWCHLNSDLGEEMAMKLQE 346 (394)
Q Consensus 310 ~~~~~~~~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 346 (394)
|+.|.... .. ..--+.+++...|+.++|..+|+.+.+
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998732 22 344566778889999999999999865
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.03 Score=39.00 Aligned_cols=89 Identities=16% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH---HHHHHHhCCCCC---hh--hHHHHHHHHHhcCCchHHH
Q 016128 267 VDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE---ARELIRELPEPT---VS--VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~---~~--~~~~l~~~~~~~g~~~~a~ 338 (394)
...+.+.+...... +. ++..+-..+..+++++.+... ++.+++.+...+ .. ..-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444332 22 566666666666776665554 666776666522 11 4455667888899999999
Q ss_pred HHHHHHHhhCCCCCchHHH
Q 016128 339 EMAMKLQEMEPENPTPFVI 357 (394)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ 357 (394)
+.++.+++.+|.|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999988665443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.22 Score=37.08 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=21.8
Q ss_pred HcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 345555555554443 23444555555555555555555555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.009 Score=42.75 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCHhhHHHHHHHHHccCCH------HHHHHHHHHchhcCCCCCCHh-hHHHHHH------HHHhcCcHHHHHHHHHhCCC
Q 016128 249 PNSASFVAVLSACGHAGHV------DKALQIFTMMDDDFGLKPKQE-HFGCMVD------LLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 315 (394)
-|..+|-..+...-+.|+. ++..++|++... .++|+.. .+...+. .+...++.++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3677888888887777888 888888888876 5566532 1112211 22345788888888887754
Q ss_pred --CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 316 --PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 316 --~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
..-. .|....+.-.++|+...|.+++.++..+.|.....+...+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1112 66677777778888888888888888888766555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.049 Score=36.81 Aligned_cols=65 Identities=9% Similarity=-0.108 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhc------CCchHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEK------QSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
.+...+..+...+.+.|++..|...|+...+... .+...++..+..++.+.|+++.|...+++..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445555666666677777777777776665321 2234555666666666666666666666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.32 Score=42.80 Aligned_cols=186 Identities=8% Similarity=0.006 Sum_probs=94.2
Q ss_pred hHhHHHHHHHHHHHHhhh-----cCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCC--hhHHHHHH----HHHHhcC
Q 016128 24 LLYLQFGRQVHGLTLKIE-----KQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRN--ILTWNTMI----AGMMLNG 92 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ll----~~~~~~~ 92 (394)
.|+++.|.+.+-.+.+.. ..........++..|...|+++...+.+..+..... -.....++ .......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 378888888776665432 344566777888888888888888777666553211 11122222 2222222
Q ss_pred CHHH--HHHHHHHHHhc--C-CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHhh
Q 016128 93 RSEK--AMELFEGLAHE--G-FKP---DPATWNSMISGFSQLGMRFEAFKLFEKMQST--GMVPS---LKCVTSVLSACA 159 (394)
Q Consensus 93 ~~~~--a~~~~~~m~~~--g-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~l~~~~~ 159 (394)
..+. -..+.+..... | +.. .......|...|...|++.+|.+++.++... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 11122111110 1 111 1122345666677777777777777776532 22111 124445556666
Q ss_pred ccchhhHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 160 DLSALKLGKETHGHVIR----ADLNKD--ESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 160 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666666665532 111111 133344455555556666665555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.023 Score=53.08 Aligned_cols=55 Identities=7% Similarity=-0.049 Sum_probs=50.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhh
Q 016128 325 LGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIN 379 (394)
Q Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 379 (394)
...|...|+++-|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3556778999999999999999999999999999999999999999999999985
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.12 Score=37.03 Aligned_cols=53 Identities=17% Similarity=0.044 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMV 145 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 145 (394)
++.++|.++|+.+...+-+- ...|......-.++|+..+|.+++......+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554431111 445555555555666666666666666655544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.7 Score=46.25 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHhhcC--CCCh----hhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHH
Q 016128 183 ESMATALISMYMKCGQPSWARRFFDQFEIK--PDDP----AFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVA 256 (394)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (394)
..-|..++..+.+.+.++.+.++-...... +.+. ..|..+...+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 344566666777777777766665543221 1121 1367777777777777777777776655432 3445555
Q ss_pred HHHHHHccCCHH
Q 016128 257 VLSACGHAGHVD 268 (394)
Q Consensus 257 l~~~~~~~~~~~ 268 (394)
|+..++..|..+
T Consensus 977 LV~~lce~~~~~ 988 (1139)
T 4fhn_B 977 FVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHhCCChh
Confidence 666555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.19 Score=47.02 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccch-hhHHHHHHHHHHHc------CCC-CCH----
Q 016128 117 NSMISGFSQLGM-RFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSA-LKLGKETHGHVIRA------DLN-KDE---- 183 (394)
Q Consensus 117 ~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~-~~~---- 183 (394)
..++..+...++ .+.|..+|+++.......+......++..+...++ --+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555555 47788888888765322122222233333333332 22334444333321 111 111
Q ss_pred ------HHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 184 ------SMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 184 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
.....-...+...|+++-|+.+.++.... |.+..+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222244566678888888888886554 667788889999999999999888888776
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.81 E-value=0.3 Score=32.13 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+ +.....+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 55677788888888889999999999999999999999999999999874 33345567766643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.057 Score=46.69 Aligned_cols=67 Identities=12% Similarity=-0.068 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-----ccccccCC
Q 016128 322 HSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND-----RQLTKLPG 388 (394)
Q Consensus 322 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 388 (394)
..++.++...|++++++..++.+...+|-+...+..++.++.+.|+..+|++.|+.+.+ .|+.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556666777777777777777777777777777777777777777777777776543 36666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.51 E-value=3.6 Score=39.63 Aligned_cols=256 Identities=8% Similarity=0.099 Sum_probs=126.6
Q ss_pred HHhcCChhHHHHHHHHhcc---CCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 016128 56 YLKCGCLPCAHNVFQELKG---SRNIL--TWNTMIAGMMLNGRSEKAMELFEGLAHEGF-------KPDPATWNSMISGF 123 (394)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~l~~~~ 123 (394)
....|+.++++.+++.... ..+.. .=..+.-+.+..|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445777777777777653 11222 122333445556665667776666554311 01111222333333
Q ss_pred HccCC-HHHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCC
Q 016128 124 SQLGM-RFEAFKLFEKMQSTGMVPSLKCVT--SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY--MKCGQ 198 (394)
Q Consensus 124 ~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~ 198 (394)
+-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+..++ ...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33333 2455565655554321 1111112 22333455666666666666665432 333444344433 35678
Q ss_pred chHHHHHHHHhhcCCCChhh-HH---HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 016128 199 PSWARRFFDQFEIKPDDPAF-WN---AMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIF 274 (394)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 274 (394)
.+.+..+.+.+... .++.. |. ++.-+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888777777654 23333 33 34456777788777777887777642 223333333333444456656666666
Q ss_pred HHchhcCCCCCCHhhHHHHHHHHHhcCcH-HHHHHHHHhCCC-CChh
Q 016128 275 TMMDDDFGLKPKQEHFGCMVDLLGRSGRL-DEARELIRELPE-PTVS 319 (394)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~-~~~~ 319 (394)
+.+.+. ..|....-..+.-+....|.. .++...+..+.. ++..
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 655542 233333223333333334433 566667766664 4444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.48 E-value=2.6 Score=42.17 Aligned_cols=128 Identities=9% Similarity=0.138 Sum_probs=62.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSL----KCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALI 190 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 190 (394)
-|..++..+.+.+.++.+.++-....+.....+. ..|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455555565666666655555444332111111 1345555666666666666655555543322 233444444
Q ss_pred HHHHHcCC------------chHHHHHHHHhhc----CCCChhhHHHHHHHHhhcCChhhHHH-HHHHHHH
Q 016128 191 SMYMKCGQ------------PSWARRFFDQFEI----KPDDPAFWNAMISGYGRNGEYESAVE-IFDLMQQ 244 (394)
Q Consensus 191 ~~~~~~g~------------~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 244 (394)
...+..|+ .++..+++..... ....+..|..|-.-+...|++.+|-. +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 44444433 3344444432211 01234556777777777788766544 4555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=2.5 Score=37.12 Aligned_cols=188 Identities=9% Similarity=0.029 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc
Q 016128 126 LGMRFEAFKLFEKMQST-----GMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMY----MKC 196 (394)
Q Consensus 126 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 196 (394)
.|++++|++.+..+.+. ...-+......++..|...++++...+.+..+.+..... ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37889998888766542 345567788889999999999999988887765433222 23333344332 223
Q ss_pred CCchH--HHHHHHHhhcCCCC---h-----hhHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCC---HhhHHHHHHHH
Q 016128 197 GQPSW--ARRFFDQFEIKPDD---P-----AFWNAMISGYGRNGEYESAVEIFDLMQQE--KVKPN---SASFVAVLSAC 261 (394)
Q Consensus 197 g~~~~--a~~~~~~~~~~~~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 261 (394)
...+. -..+.+.+.....+ . .....|...+...|++.+|.+++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33322 22222222221111 1 12356788889999999999999998643 22211 23566777889
Q ss_pred HccCCHHHHHHHHHHchhcC-CCCCCH----hhHHHHHHHHHhcCcHHHHHHHHHhCC
Q 016128 262 GHAGHVDKALQIFTMMDDDF-GLKPKQ----EHFGCMVDLLGRSGRLDEARELIRELP 314 (394)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (394)
...+++.+|..++..+.... ...+++ ..+...+..+...+++.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998874311 122222 345666777888899999888776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.32 E-value=4 Score=39.36 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=12.5
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHH
Q 016128 15 ISVISACASLLYLQFGRQVHGLTL 38 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~ 38 (394)
..++++..+.++.+.+.++|..+.
T Consensus 234 ~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 234 LTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444555555566655544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.19 Score=36.85 Aligned_cols=119 Identities=16% Similarity=0.031 Sum_probs=61.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHHhCCC-----CChh-
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-------EHFGCMVDLLGRSGRLDEARELIRELPE-----PTVS- 319 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~- 319 (394)
++..-++.+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++... +...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444566667777777777766654321223331 2445566677777777777777766432 1110
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhccc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQL 383 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 383 (394)
+...+. . ...... -. ..+.+.+.-..++.+|.+.|++++|+.+++.+.....
T Consensus 102 ~~~~~~-~---~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 102 VRPSTG-N---SASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred cccccc-c---cCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 100000 0 000000 00 0012224556678888888999999888887655433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.75 E-value=1.2 Score=31.08 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=50.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhH---HHHHHHHhccC--C--ChhHHHHHHHHHHh
Q 016128 18 ISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPC---AHNVFQELKGS--R--NILTWNTMIAGMML 90 (394)
Q Consensus 18 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~ll~~~~~ 90 (394)
+..-.....+..+.+-|......| .++..+--.+..++.+.....+ ++.+++.+... | .....-.|.-++.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 333344455556666666655555 4666666666666766665544 66667666532 1 11222334455666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 016128 91 NGRSEKAMELFEGLAHE 107 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~ 107 (394)
.|++++|.+.++.+.+.
T Consensus 87 lg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQT 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.5 Score=34.60 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHhhcC---CCCh-------hhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHh-hHH
Q 016128 188 ALISMYMKCGQPSWARRFFDQFEIK---PDDP-------AFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKPNSA-SFV 255 (394)
Q Consensus 188 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-~~~ 255 (394)
.-+..+...|.++.|+-+.+.+... +++. .++..+.+++...+++..|...|++..+.. .-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455666677777777666653222 2221 134556667777777777777777764421 111111 111
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
.+. ....... ......+...-..+..+|.+.|++++|+.+++.++.
T Consensus 105 ~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 110 0000000 001223344555577788888888888888888765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=4.3 Score=37.35 Aligned_cols=309 Identities=11% Similarity=0.021 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 127 (394)
.-+..+..+.+.+++...+..+.. . +.+...-.....+....|+..+|......+-..|-. .+..+..++..+.+.|
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence 345566777888899888886665 3 456665666778888889988888877777666533 5567778888888776
Q ss_pred CHHH--HHHHHHHHHhCC-----------CCCCHHH-HHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHH---HHHHH
Q 016128 128 MRFE--AFKLFEKMQSTG-----------MVPSLKC-VTSVLSACADLSALKLGKETHGHVIRADLNKDESM---ATALI 190 (394)
Q Consensus 128 ~~~~--a~~~~~~m~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~ 190 (394)
.... ...=++.+...| +.++... ...++....+ ...+...... ..++... +...+
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAAVAF 222 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc-----cCCChhhHHHHHHHH
Confidence 6543 222223333332 1111111 1111111111 1111111111 1223221 22223
Q ss_pred HHHHHcCCchHHHHHHHHhhcC-CCChhh----HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 016128 191 SMYMKCGQPSWARRFFDQFEIK-PDDPAF----WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAG 265 (394)
Q Consensus 191 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (394)
.-+.+ .+.+.|...+...... ..+... +..+...+...+...++...+...... .++.....-.+....+.|
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHT
T ss_pred HHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCC
Confidence 33333 3788999999887543 223332 333333444555455667777765543 234444444455555779
Q ss_pred CHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 266 HVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
+++.|...|..+... . .....-.--+.+++...|+.++|..+|+.+..+. .-|..+. ..+.|..... . ..
T Consensus 300 d~~~a~~~~~~l~~~-~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~-~fYg~lA--a~~Lg~~~~~-~----~~ 369 (618)
T 1qsa_A 300 DRRGLNTWLARLPME-A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR-GFYPMVA--AQRIGEEYEL-K----ID 369 (618)
T ss_dssp CHHHHHHHHHHSCTT-G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SHHHHHH--HHHTTCCCCC-C----CC
T ss_pred CHHHHHHHHHHcccc-c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHH--HHHcCCCCCC-C----CC
Confidence 999999999998653 1 1233334556778889999999999999998753 2343332 2233321100 0 00
Q ss_pred hhCCCCCc-----hHHHHHHHHhhcCCcccHHHHHHHhhh
Q 016128 346 EMEPENPT-----PFVILSNIYAGLGRWEDVGRIRQMIND 380 (394)
Q Consensus 346 ~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 380 (394)
...+.... .-..-+..+...|....|...+..+..
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 00111111 122334556778888888887776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=2 Score=37.05 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 016128 84 MIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKCV 151 (394)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 151 (394)
++..+...|++++|...+..+..... -+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455566777777766666655422 2566677777777777777777777666532 3666665543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.84 Score=31.90 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDL 296 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (394)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+ +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 45567777888888889999999999999999999999999999999874 44445567776643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=1.7 Score=30.94 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=48.9
Q ss_pred CCCHhhHHHHHHHHHhcCcHH---HHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 284 KPKQEHFGCMVDLLGRSGRLD---EARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
.|+..+--.+..++.++.+.+ +++.+++++.. |... ..-.|.-++.+.|++++|.++.+.+++.+|.|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 456666556666666665443 45555555543 4222 5556667888999999999999999999998865543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.08 E-value=4.4 Score=33.43 Aligned_cols=166 Identities=13% Similarity=0.015 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHH
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKL----FEKMQSTGMVPSLKCVTSVLS 156 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~ 156 (394)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ .+-..+.+++++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455566677777777777654322 24445665554443 344445567777777777776
Q ss_pred Hhhccch-----hhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhc
Q 016128 157 ACADLSA-----LKLGKETHGHVIRAD--LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRN 229 (394)
Q Consensus 157 ~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (394)
.+..... .+-..+.+..-.+.| ..-++.....+...|.+.|++.+|+..|-.-.. .++..+..++.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~--~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH--DSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--ccHHHHHHHHHHHHHh
Confidence 6654321 122222333333332 224778888888999999999888887752211 1344444444333332
Q ss_pred ---CChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 230 ---GEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 230 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
|...++ +...-..++. |.-.++...|..+++...
T Consensus 179 ~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 332221 1111222222 334577888877777654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.96 E-value=0.9 Score=29.94 Aligned_cols=61 Identities=10% Similarity=-0.011 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHH
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIA 86 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~ 86 (394)
|.=+.++-++.+...++.|++.+..+.+++|-+-+++..|.++|+-++. .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3345666677777777888888888888888888888888888887765 223334554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.49 E-value=5.4 Score=33.21 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHH----HHHHHHcCCCCCHhhHHHHHHHH
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEI----FDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
|.++..=|.+.+++++|.+++..-. ..+.+.|+...+.++ ++-+.+.++++|......++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3445555666666666666553311 122233333333222 23334445555555555555554
Q ss_pred HccCC--H------HHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 016128 262 GHAGH--V------DKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELI 310 (394)
Q Consensus 262 ~~~~~--~------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 310 (394)
..... . .+|+++=... .. .-.-|+.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~-g~-~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKF-GD-YPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHH-SS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhc-CC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 43322 1 1112211110 00 12335666667777777777777776665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.7 Score=32.37 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=37.6
Q ss_pred CCHhhHHHHHHHHHhcCcH---HHHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 016128 285 PKQEHFGCMVDLLGRSGRL---DEARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTP 354 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 354 (394)
|++.+--.+..++.++.+. .+++.+++++.. |... .+-.+.-++.+.|++++|.+..+.+.+.+|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444444444444433 234444444432 2211 44455566677777777777777777777766544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.51 E-value=3.1 Score=33.26 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHh----hHHHHHHHHHhc
Q 016128 225 GYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQE----HFGCMVDLLGRS 300 (394)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 300 (394)
.+.+.|+.+++++....-++.. +-|...-..+++.+|-.|++++|.+-++...+. .|+.. .|..+|++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556677777777777666653 235666666777777777777777777666532 33322 33333332
Q ss_pred CcHHHH-HHHHHhCCCC-----ChhhHHHHHHHH--HhcCCchHHHHHHHHHHhhCCCCCc
Q 016128 301 GRLDEA-RELIRELPEP-----TVSVYHSLLGAC--WCHLNSDLGEEMAMKLQEMEPENPT 353 (394)
Q Consensus 301 g~~~~a-~~~~~~~~~~-----~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~ 353 (394)
+.. .++|..-..| ...-...++.+. ...|+.++|.++-..+.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 1233322221 111233334443 3458888888888877777665543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.42 E-value=7.9 Score=33.24 Aligned_cols=286 Identities=9% Similarity=-0.003 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-------CCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHH---
Q 016128 48 IGTALVDMYLKCGCLPCAHNVFQELKG-------SRNILTWNTMIAGMMLN-GRSEKAMELFEGLAHEGFKPDPATW--- 116 (394)
Q Consensus 48 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~--- 116 (394)
....|...|.+.|+.++..+++..... .......+.+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 446677788888888888888877653 11334456677776654 3344444444444332100 11223
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHhhccchhhHHHHHHHHHHHc--CCCCCHHHH
Q 016128 117 ---NSMISGFSQLGMRFEAFKLFEKMQST--GMVPS---LKCVTSVLSACADLSALKLGKETHGHVIRA--DLNKDESMA 186 (394)
Q Consensus 117 ---~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 186 (394)
..++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++.++...+...... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25778888889999998888887753 11111 234555667778888888888888776543 232444433
Q ss_pred HHH----HHHHH-HcCCchHHHHHHHHhhcC---CCCh-----hhHHHHHHHHhhcCChhhHHHHHH-HHHHcCCCCCHh
Q 016128 187 TAL----ISMYM-KCGQPSWARRFFDQFEIK---PDDP-----AFWNAMISGYGRNGEYESAVEIFD-LMQQEKVKPNSA 252 (394)
Q Consensus 187 ~~l----~~~~~-~~g~~~~a~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 252 (394)
..+ ...+. ..+++..|...|-+.-.. ..++ ..|..+.. .. .++..+.-.++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHH
Confidence 222 23345 678888887776554211 1111 11322222 22 233333333322 211111345556
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChh-hHHHHHHHHHhc
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVS-VYHSLLGACWCH 331 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~ 331 (394)
.+..++.++ ..+++.+...++..... .+..|+.....+ ..+.+ .-. ...+.++.+|-.. ++..+...+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~-~~L~~-~Ir---~~~L~~i~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHL-GTLYD-TML---EQNLCRIIEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHH-HHHHH-HHH---HHHHHHHHTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHH-HHHHH-HHH---HHHHHHHhHhhceeeHHHHHHHHCc-
Confidence 666777765 45788888888877654 455565432211 11111 001 1122222334333 77777766643
Q ss_pred CCchHHHHHHHHHHh
Q 016128 332 LNSDLGEEMAMKLQE 346 (394)
Q Consensus 332 g~~~~a~~~~~~~~~ 346 (394)
..++++..+.++..
T Consensus 329 -s~~evE~~L~~lI~ 342 (394)
T 3txn_A 329 -PMPQVEKKLSQMIL 342 (394)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 56788888888776
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.28 E-value=6.9 Score=32.31 Aligned_cols=113 Identities=10% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHH----HHHHHHHcCCCCCHhhHHHHHHHH
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVE----IFDLMQQEKVKPNSASFVAVLSAC 261 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~ 261 (394)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.+ +.+-..+.+.+++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444455556666666666543321 12233344333333 233444455666666655555554
Q ss_pred HccCC-----HHHHHHHHHHchhcCC-CCCCHhhHHHHHHHHHhcCcHHHHHHHHH
Q 016128 262 GHAGH-----VDKALQIFTMMDDDFG-LKPKQEHFGCMVDLLGRSGRLDEARELIR 311 (394)
Q Consensus 262 ~~~~~-----~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (394)
..... .+-..+...+..+..+ -.-++..+..+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33211 1111112222221101 12356677777777777777777776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.23 E-value=7.2 Score=32.48 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHh
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLF----EKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
++..-|.+.+++++|++++-.-. ..+.+.|+...+-++- +-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444555666666666543321 1233344444433332 3333445556665555555555
Q ss_pred hccchh-----hHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCC
Q 016128 159 ADLSAL-----KLGKETHGHVIRAD--LNKDESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGE 231 (394)
Q Consensus 159 ~~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (394)
.....- .-..+.+..-.+.| ..-++.....+...|.+.+++.+|+..|- ....+.+..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcC
Confidence 443321 11112222222322 33477888888999999999999888773 2211223455444433333332
Q ss_pred hhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHch
Q 016128 232 YESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMD 278 (394)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 278 (394)
..+ ++...-..++. |.-.++...|..+++...
T Consensus 183 ~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 183 SHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred Ccc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 211 12222223333 334577777777665554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.01 E-value=5.3 Score=28.00 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 163 ALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
+...+..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+...
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33445555555554432112333334455555666666666666555544
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.86 E-value=5.4 Score=33.64 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=13.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMM 277 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~ 277 (394)
..++.-|...++.++|.+.++++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL 243 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKEL 243 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHc
Confidence 34555555566666666666665
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.20 E-value=8.3 Score=33.66 Aligned_cols=99 Identities=9% Similarity=-0.044 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHH--
Q 016128 79 LTWNTMIAGMMLNGRSEKAMELFEGLAHE--GFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS---TGMVPSLKCV-- 151 (394)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~-- 151 (394)
.+...+...|.+.|++++|.+.|.++... +..--...+-..++.+...+++..+...+.+... .+..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 34556667777777777777777777664 2222355666667777777777777777666542 2222222211
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHHc
Q 016128 152 TSVLSACADLSALKLGKETHGHVIRA 177 (394)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (394)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11112234456677776666665443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.32 E-value=6.7 Score=34.26 Aligned_cols=119 Identities=12% Similarity=-0.000 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhhccchhhHHH
Q 016128 93 RSEKAMELFEGLAHEG-FKP-DPATWNSMISGFSQLGMRFEAFKLFEKMQST--GMVPSLKCVTSVLSACADLSALKLGK 168 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 168 (394)
..++-.+..+...+.. ... -..++..+...|.+.|++++|.+.|.++... +...-...+..+++.+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3445555555554432 222 2346778999999999999999999999864 33334567888899999999999999
Q ss_pred HHHHHHHHcC-CCCCHHHHHHH----HHHHHHcCCchHHHHHHHHhhc
Q 016128 169 ETHGHVIRAD-LNKDESMATAL----ISMYMKCGQPSWARRFFDQFEI 211 (394)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~ 211 (394)
..+.++...- -.++....+.+ +..+...+++..|.+.|-+...
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999875431 12232222211 2223456889998888876543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.63 E-value=7.4 Score=27.30 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVL 155 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 155 (394)
+..+-++.+...++.|++......+++|.+.+++.-|.++|+..+.+ ..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45566666666777777777777777777777777777777777654 222233454443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.94 E-value=7.1 Score=25.66 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
....++|..+-+.+... +. ...+--.-+..+...|++++|..+.+...-||...|-.|.. .+.|-..++...+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567777777777654 22 22222223446778899999988888888888888877753 466777777666655
Q ss_pred HHhhC
Q 016128 344 LQEME 348 (394)
Q Consensus 344 ~~~~~ 348 (394)
+...+
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 54444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.78 E-value=12 Score=28.35 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 016128 91 NGRSEKAMELFEGLAHEGFKPD-PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVP 146 (394)
Q Consensus 91 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (394)
.+...++.++|..|..+|+--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4557789999999988876543 5567888888889999999999999988887777
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.56 E-value=7.4 Score=25.61 Aligned_cols=80 Identities=14% Similarity=0.014 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMK 343 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 343 (394)
....++|..+-+.+... +. ...+--.-+..+...|++++|..+.+...-||...|-.|.. .+.|-..++...+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567777777777654 22 22222222446778888888888888888888888777653 356666666665544
Q ss_pred HHhhC
Q 016128 344 LQEME 348 (394)
Q Consensus 344 ~~~~~ 348 (394)
+...+
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 44433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.73 E-value=11 Score=26.85 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 016128 164 LKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK 212 (394)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 212 (394)
..++..+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+...
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3344444544444332112222233444555555555555555554443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.59 E-value=31 Score=32.00 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCCChh--hHHHHHHHHH-hcC--C---------chHHHHHHHHHHhhC-----------
Q 016128 294 VDLLGRSGRLDEARELIRELPEPTVS--VYHSLLGACW-CHL--N---------SDLGEEMAMKLQEME----------- 348 (394)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~-~~g--~---------~~~a~~~~~~~~~~~----------- 348 (394)
..-+...|++++|..+|.-..+.|.+ +.|.++.-.. ... + .+.-..+.+++.+.-
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 34567899999999999999886665 5665553333 221 1 012233333333321
Q ss_pred CCCCchHHHHHHH-----HhhcCCcccHHHHHHHh
Q 016128 349 PENPTPFVILSNI-----YAGLGRWEDVGRIRQMI 378 (394)
Q Consensus 349 ~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 378 (394)
+.+..++..|... +.+.|+|+.|++.++++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2233455555443 36889999999888875
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.51 E-value=7 Score=29.69 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCC----CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 016128 303 LDEARELIRELPE----PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEME 348 (394)
Q Consensus 303 ~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 348 (394)
..++..+|.-|.. .... .|......+...|++.+|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455555544433 2222 45555555555566666666655555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 394 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%)
Query: 181 KDESMATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIF 239
+ L ++ G+ A F++ + P+ + + + ++ AV +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQ-EHFGCMVDLLG 298
+ G +D A+ + L+P + + + + L
Sbjct: 227 LRALSLSPNHAVVHG-NLACVYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALK 282
Query: 299 RSGRLDEARELIREL--PEPTVSVYHSLLGACWCHL-NSDLGEEMAMKLQEMEPENPTPF 355
G + EA + PT + + L N + + K E+ PE
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 356 VILSNIYAGLGRWED 370
L+++ G+ ++
Sbjct: 343 SNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 23/204 (11%), Positives = 65/204 (31%), Gaps = 8/204 (3%)
Query: 52 LVDMYLKCGCLPCAHNVFQEL--KGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGF 109
L ++ G + A + F++ + + + + ++A+ + A
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLS 233
Query: 110 KPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKE 169
++ + + G+ A + + + + P L+ E
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 170 THGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGR 228
+ L ++ + G A R + + E+ P+ A + + S +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 229 NGEYESAVEIFDLMQQEKVKPNSA 252
G+ + A+ + + ++ P A
Sbjct: 352 QGKLQEALMHYK--EAIRISPTFA 373
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/181 (11%), Positives = 42/181 (23%), Gaps = 5/181 (2%)
Query: 193 YMKCGQPSWARRFFDQF-EIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS 251
+ G A R Q +PD+ + S + + + + K P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLL 66
Query: 252 ASFVAVLSAC--GHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEAREL 309
A + L + + + + G +A
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 310 IRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWE 369
+ V L + + +K E +P + L ++ G
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 370 D 370
Sbjct: 187 L 187
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 39.6 bits (92), Expect = 4e-04
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 5/140 (3%)
Query: 193 YMKCGQPSWARRFFDQ-FEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS 251
+ GQ A + + P D + ++ I +G++E A E LMQ K+ P
Sbjct: 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE--QLMQSIKLFPEY 63
Query: 252 ASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIR 311
+ L A K G + +L S ++ EL
Sbjct: 64 LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123
Query: 312 ELPE--PTVSVYHSLLGACW 329
++ E +
Sbjct: 124 QIEELRQEKGFLANDTSFSD 143
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.76 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.45 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.43 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.42 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.93 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.93 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.87 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.87 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.66 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.61 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.48 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.27 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.07 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.82 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.1 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.06 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.87 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.51 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.6e-26 Score=197.01 Aligned_cols=344 Identities=10% Similarity=0.028 Sum_probs=218.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCH
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRS 94 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~ 94 (394)
+...+.+.|++++|.+.++.+++.. |.+..++..+..++.+.|++++|+..|++... +.+..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4456778999999999999999876 56788999999999999999999999999765 45678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHH----------------------------------HHHHHHHHHH
Q 016128 95 EKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRF----------------------------------EAFKLFEKMQ 140 (394)
Q Consensus 95 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~----------------------------------~a~~~~~~m~ 140 (394)
++|+..+....+.... +..............+... .+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999999886433 3333333333333333333 3333333333
Q ss_pred hCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhH
Q 016128 141 STGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDDPAFW 219 (394)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 219 (394)
... +.+...+..+...+...|+++.|...+++..+... .+...+..+...+...|++++|...+++.... +.+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 221 22334455555555666666666666666555432 24555555666666666666666666554432 3444555
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh
Q 016128 220 NAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR 299 (394)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (394)
..+...+.+.|++++|+..|++..+... -+..++..+...+...|++++|...++.... ..+.+...+..+...+.+
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 5566666666666666666666655421 2345555566666666666666666665554 334445555556666666
Q ss_pred cCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 300 SGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 300 ~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
.|++++|...|++..+ |+.. ++..+..++...|++++|+..|+++++++|.++.++..++.+|.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 6666666666666554 4444 556666666666666666666666666666666666666666655553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-23 Score=180.90 Aligned_cols=324 Identities=11% Similarity=0.043 Sum_probs=267.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhcc--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCH
Q 016128 52 LVDMYLKCGCLPCAHNVFQELKG--SRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMR 129 (394)
Q Consensus 52 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 129 (394)
+...+.+.|++++|++.++++.. +.+...+..+...+.+.|++++|...|++..+.... +..+|..+..+|...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 45567789999999999999865 446788999999999999999999999999887433 678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH----------------------------------HhhccchhhHHHHHHHHHH
Q 016128 130 FEAFKLFEKMQSTGMVPSLKCVTSVLS----------------------------------ACADLSALKLGKETHGHVI 175 (394)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~~~~~~ 175 (394)
++|+..+....+.... +......... .....+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999998765322 2222222221 2222333334444444444
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhc-CCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhH
Q 016128 176 RADLNKDESMATALISMYMKCGQPSWARRFFDQFEI-KPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASF 254 (394)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (394)
... +.+...+..+...+...|++++|...+++... .|.++..|..+...+...|++++|+..+++....+ ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 443 33567788888999999999999999988654 46778889999999999999999999999998875 3467788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhc
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCH 331 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~ 331 (394)
..+...+...|++++|...|++..+. .+.+..++..+...+...|++++|.+.++.... |+.. .+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 88999999999999999999998863 344577889999999999999999999998876 5555 889999999999
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 332 LNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 332 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
|++++|+..++++.+..|.++.++..++.++.+.|++++|+..++++.+.
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.3e-17 Score=137.45 Aligned_cols=237 Identities=13% Similarity=0.012 Sum_probs=153.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 016128 118 SMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCG 197 (394)
Q Consensus 118 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 197 (394)
.....+.+.|++++|+..|++..+.. +-+...|..+..++...|+++.|...+.+..+... -+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45667889999999999999988764 33577888888899999999999999999887753 36778888888899999
Q ss_pred CchHHHHHHHHhhcCCCC-hhhH---------------HHHHHHHhhcCChhhHHHHHHHHHHcCC-CCCHhhHHHHHHH
Q 016128 198 QPSWARRFFDQFEIKPDD-PAFW---------------NAMISGYGRNGEYESAVEIFDLMQQEKV-KPNSASFVAVLSA 260 (394)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~-~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 260 (394)
++++|.+.+++.....++ ...+ ...+..+...+.+.+|...+.+..+... .++...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999998886554222 1110 1111222334455566666666554322 2234555566666
Q ss_pred HHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHH
Q 016128 261 CGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLG 337 (394)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a 337 (394)
+...|++++|...++..... .+.+...+..+...|.+.|++++|.+.|++..+ |+.. +|..++.+|...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 66666666666666666542 223455566666666666666666666666554 5544 666666666666666666
Q ss_pred HHHHHHHHhhCCCCCchHHHH
Q 016128 338 EEMAMKLQEMEPENPTPFVIL 358 (394)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l 358 (394)
+..|++++++.|.++..+...
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~ 280 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEG 280 (323)
T ss_dssp HHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHhCCcChhhhhhh
Confidence 666666666666665544433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.7e-16 Score=130.94 Aligned_cols=228 Identities=11% Similarity=0.030 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc
Q 016128 83 TMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS 162 (394)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 162 (394)
.....+.+.|++++|+..|++..+..+. +..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4566788999999999999999987433 68899999999999999999999999988764 336778888889999999
Q ss_pred hhhHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHHcCCchHHHHHHHHhhcC---CCChhhHHHHHHH
Q 016128 163 ALKLGKETHGHVIRADLNK--------------DESMATALISMYMKCGQPSWARRFFDQFEIK---PDDPAFWNAMISG 225 (394)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~l~~~ 225 (394)
++++|.+.++.+....... +.......+..+...+.+.+|...|.+.... ..++..+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999999987654211 0011111223344556677888888775432 2345668888899
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (394)
+...|++++|+..+++...... -+...+..+...+...|++++|...++...+. -+-+...+..+..+|.+.|++++
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999887643 36778888999999999999999999998863 23356788889999999999999
Q ss_pred HHHHHHhCCC
Q 016128 306 ARELIRELPE 315 (394)
Q Consensus 306 a~~~~~~~~~ 315 (394)
|+..|++..+
T Consensus 259 A~~~~~~al~ 268 (323)
T d1fcha_ 259 AVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=3.4e-13 Score=113.67 Aligned_cols=261 Identities=11% Similarity=-0.041 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc-
Q 016128 94 SEKAMELFEGLAHEGFKPDPATWNSMISG----------FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS- 162 (394)
Q Consensus 94 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~----------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~- 162 (394)
.++|+++++...+..+. +...|+..-.. +...|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 45666666666554221 23333322221 223345677777787777653 335555665655555444
Q ss_pred -hhhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHH
Q 016128 163 -ALKLGKETHGHVIRADLNKDESMA-TALISMYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIF 239 (394)
Q Consensus 163 -~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 239 (394)
+++++...+..+.+.... +...+ ......+...+.+++|...++..... |.+...|+.+...+.+.|++++|...+
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 467888888887776533 34443 34556677778888888888876655 667778888888888888888776666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CC
Q 016128 240 DLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PT 317 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~ 317 (394)
+...+. .|+. ..+...+...+..+++...+..... ..+++...+..+...+...|++++|...+.+..+ |+
T Consensus 202 ~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 202 RLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp SSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 544432 1111 1223334455666667777776655 3344555666677788888999999999999887 44
Q ss_pred hh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 016128 318 VS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAG 364 (394)
Q Consensus 318 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (394)
.. ++..++.++...|+.++|+..++++.+++|.+...|..|...+.-
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 44 888899999999999999999999999999888888878766653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=4.6e-11 Score=101.07 Aligned_cols=288 Identities=10% Similarity=0.010 Sum_probs=162.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 016128 86 AGMMLNGRSEKAMELFEGLAHEGFKPD----PATWNSMISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLS 156 (394)
Q Consensus 86 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~ 156 (394)
..+...|++++|++++++..+.....+ ..++..+..+|...|++++|+..|++..+. +..+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334445555555555555444311111 123444445555555555555555554321 0000 1122333444
Q ss_pred HhhccchhhHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCC------CChhhHHHHH
Q 016128 157 ACADLSALKLGKETHGHVIRA----DLNK---DESMATALISMYMKCGQPSWARRFFDQFEIKP------DDPAFWNAMI 223 (394)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~l~ 223 (394)
.+...|++..+...+...... +... ....+..+...+...|+++.+...+....... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 455555555555555544321 1111 12334455666777777777777776654321 1122345555
Q ss_pred HHHhhcCChhhHHHHHHHHHHcC--CCCC----HhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHH
Q 016128 224 SGYGRNGEYESAVEIFDLMQQEK--VKPN----SASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMV 294 (394)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 294 (394)
..+...++...+...+.+..... .... ...+..+...+...|++++|...++..... ....+ ...+..+.
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHH
Confidence 66777788888777777654321 1111 223455566677888899998888877653 21111 23455677
Q ss_pred HHHHhcCcHHHHHHHHHhCCC--------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---------CchHH
Q 016128 295 DLLGRSGRLDEARELIRELPE--------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN---------PTPFV 356 (394)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~--------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~ 356 (394)
..+...|++++|...+++... |+.. ++..+..++...|++++|.+.++++.++.+.. ...+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~ 338 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 338 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 888889999999888887642 3333 77888888999999999999999888765321 12344
Q ss_pred HHHHHHhhcCCcccHHHH
Q 016128 357 ILSNIYAGLGRWEDVGRI 374 (394)
Q Consensus 357 ~l~~~~~~~g~~~~a~~~ 374 (394)
.++..+...++.+++.+.
T Consensus 339 ~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 339 QQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhcCCChHHHHH
Confidence 455566677777777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=3.3e-11 Score=101.99 Aligned_cols=267 Identities=10% Similarity=-0.069 Sum_probs=194.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCC-CC----HHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPS----LKCVTSVLSACADLSALKLGKETHGHVIRADLN-KD----ESM 185 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 185 (394)
........+...|++++|+.++++..+.....+ ...+..+..++...|++++|...+++..+.... ++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456678899999999999999887532211 245677788899999999999999988653211 11 344
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhhcC------CCC---hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCC----CCHh
Q 016128 186 ATALISMYMKCGQPSWARRFFDQFEIK------PDD---PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVK----PNSA 252 (394)
Q Consensus 186 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 252 (394)
+..+...+...|++..+...+...... +.. ...+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566777888999999999988774321 111 223566778889999999999999988764322 2334
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCC-CCC----HhhHHHHHHHHHhcCcHHHHHHHHHhCCC--C---Ch-h-h
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGL-KPK----QEHFGCMVDLLGRSGRLDEARELIRELPE--P---TV-S-V 320 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~-~-~ 320 (394)
++......+...++...+...+........- ... ...+..+...+...|++++|...+++... + .. . .
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5556667778889999888887765432111 111 23455667788899999999999998876 1 11 1 5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhh------CCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 321 YHSLLGACWCHLNSDLGEEMAMKLQEM------EPENPTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 321 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+..+..++...|++++|...++++... .|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667888999999999999999998753 2445567888999999999999999999987653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=3.9e-12 Score=102.88 Aligned_cols=222 Identities=9% Similarity=-0.053 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 016128 129 RFEAFKLFEKMQSTGM-VP--SLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRF 205 (394)
Q Consensus 129 ~~~a~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 205 (394)
.+.++.-+++...... .+ ...++..+..+|.+.|++++|.+.|++.++.. +.++.++..+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555555554321 11 12355566667777777777777777777765 23677788888888888888888888
Q ss_pred HHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC
Q 016128 206 FDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK 284 (394)
Q Consensus 206 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (394)
|++.... |.++.++..+..++...|++++|+..|++..+... .+......+...+...+..+....+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 8876554 56677788888888888888888888888877642 24444434444445555555555554444432 2
Q ss_pred CCHhhHHHHHHHHHhcCc----HHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 285 PKQEHFGCMVDLLGRSGR----LDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
++...+. ++..+..... .+.+...+..... |+.. +|..+...+...|++++|...|++++..+|.+...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 2222222222 2222222222111 4444 7778889999999999999999999999997754443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.6e-11 Score=100.68 Aligned_cols=147 Identities=11% Similarity=0.042 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccc-hhhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016128 113 PATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLS-ALKLGKETHGHVIRADLNKDESMATALIS 191 (394)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 191 (394)
..+|+.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|...++.+++... -+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 3455556666666777777777777776653 224455566665655544 46666666666666542 35666666666
Q ss_pred HHHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 016128 192 MYMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACG 262 (394)
Q Consensus 192 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (394)
.+.+.|++++|+..++++... |.+...|..+...+...|++++|+..++++.+.++. +...|+.+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHH
Confidence 666666666666666665443 555666666666666666666666666666665322 4445554444433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=2.3e-10 Score=94.72 Aligned_cols=187 Identities=12% Similarity=0.084 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHH
Q 016128 93 RSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHG 172 (394)
Q Consensus 93 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (394)
..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666677777665444445566666667777777777777777777664333234456666677777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHHcCCchHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCC
Q 016128 173 HVIRADLNKDESMATALISM-YMKCGQPSWARRFFDQFEIK-PDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEK-VKP 249 (394)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 249 (394)
.+.+.+.. +...+...... +...|+.+.|..+|+..... |.++..|...+..+.+.|+.+.|..+|++..... ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 76665432 23333333322 23346667777777765554 5566667777777777777777777777766543 222
Q ss_pred C--HhhHHHHHHHHHccCCHHHHHHHHHHchhc
Q 016128 250 N--SASFVAVLSACGHAGHVDKALQIFTMMDDD 280 (394)
Q Consensus 250 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 280 (394)
+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 235556666556667777777777666553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=3e-10 Score=94.06 Aligned_cols=217 Identities=8% Similarity=-0.024 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhc--------------CChhHHHHHHHHhcc---CCChhHHHHHHHHH
Q 016128 26 YLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKC--------------GCLPCAHNVFQELKG---SRNILTWNTMIAGM 88 (394)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~---~~~~~~~~~ll~~~ 88 (394)
..+.+..+|++++... +.++.+|...+..+-+. +..++|..+|++... +.+...|...+...
T Consensus 31 ~~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 31 ITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566778899988765 66777887776655432 345788999998764 34556788888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccchhhHH
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSA-CADLSALKLG 167 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 167 (394)
.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|....+.+. .+...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHH
Confidence 99999999999999999875444466899999999999999999999999987753 344444444333 3456889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHhhcC-CCC----hhhHHHHHHHHhhcCChhhHHHHHHHH
Q 016128 168 KETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQFEIK-PDD----PAFWNAMISGYGRNGEYESAVEIFDLM 242 (394)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (394)
..+|+.+.+.. +.+...+...+..+.+.|+.+.|+.+|++.... +.+ ...|...+..-...|+.+.+.++++++
T Consensus 189 ~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998874 457889999999999999999999999997554 223 235888888888899999999999988
Q ss_pred HHc
Q 016128 243 QQE 245 (394)
Q Consensus 243 ~~~ 245 (394)
.+.
T Consensus 268 ~~~ 270 (308)
T d2onda1 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.6e-10 Score=95.85 Aligned_cols=126 Identities=6% Similarity=0.020 Sum_probs=60.9
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcC-ChhHHHHHHHHhcc--CCChhHHHHHHHHHHhc
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCG-CLPCAHNVFQELKG--SRNILTWNTMIAGMMLN 91 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~ll~~~~~~ 91 (394)
+.+-..+.+.+..++|+++++.+++.+ |-+...|+....++...| ++++|+..+++... +.+..+|+.+...+.+.
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh
Confidence 333334444445555555555555544 334444555544444443 24555555554433 23344455555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 92 GRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 92 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
|++++|+..++++.+.... +..+|..+...+...|++++|+..++++.+.
T Consensus 126 ~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 126 RDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544222 4445555555555555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.1e-11 Score=98.42 Aligned_cols=218 Identities=11% Similarity=0.033 Sum_probs=153.0
Q ss_pred cchhhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHhhc-CCCChhhHHHHHHHHhhcCChhhHH
Q 016128 161 LSALKLGKETHGHVIRADLNK---DESMATALISMYMKCGQPSWARRFFDQFEI-KPDDPAFWNAMISGYGRNGEYESAV 236 (394)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 236 (394)
..+.+.+..-+++........ ...++..+..+|.+.|++++|...|++... .|.++.+|+.+..+|.+.|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 345566666666666543211 235677788999999999999999998655 4788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC-
Q 016128 237 EIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE- 315 (394)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 315 (394)
+.|+++.+.... +..++..+..++...|++++|...++...+. .+.+......+...+.+.+..+.+..+......
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 999999987532 5678888999999999999999999999864 233444444455556666665555554444333
Q ss_pred -CChhhHHHHHHHHHh----cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 316 -PTVSVYHSLLGACWC----HLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 316 -~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+....++. +..+.. .+..+.+...+.......|....++..++..+...|++++|...+++.....
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 169 DKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222222 222221 1223333333333344456666788889999999999999999999988654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=2.5e-11 Score=102.01 Aligned_cols=261 Identities=8% Similarity=-0.040 Sum_probs=172.5
Q ss_pred CChhHHHHHHHHhcc-CCCh-hHHHHHHHH----------HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 016128 60 GCLPCAHNVFQELKG-SRNI-LTWNTMIAG----------MMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLG 127 (394)
Q Consensus 60 g~~~~A~~~~~~~~~-~~~~-~~~~~ll~~----------~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 127 (394)
+..++|+.+++++.. .|+. ..|+..-.. +...|++++|+.+++...+...+ +...|..+..++...+
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence 334677777777654 4433 334332222 22344577888888888776433 6667777766666554
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 016128 128 --MRFEAFKLFEKMQSTGMVPSLKCVT-SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARR 204 (394)
Q Consensus 128 --~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 204 (394)
++++|+..+.+..+.. +++...+. .....+...+.++.|...++.+++.+. -+...+..+..++...|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHH
Confidence 4788888888887753 33455443 444666777888888888888877764 367788888888888888887766
Q ss_pred HHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCC
Q 016128 205 FFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLK 284 (394)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (394)
.++..... .+.. ..+...+...+..+++...+....... +++...+..++..+...++.++|...+.+..+. .+
T Consensus 200 ~~~~~~~~--~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p 273 (334)
T d1dcea1 200 QGRLPENV--LLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NK 273 (334)
T ss_dssp CCSSCHHH--HHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHhHHh--HHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--Cc
Confidence 55543331 1111 223344556677778888888777664 334555666667777778888888888877642 22
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHH
Q 016128 285 PKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACW 329 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~ 329 (394)
.+...+..+...|...|++++|.+.+++..+ |+.. .|..+...+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 3456677788888899999999999998876 6555 6666655554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=8.5e-10 Score=85.04 Aligned_cols=117 Identities=8% Similarity=-0.149 Sum_probs=94.3
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHH
Q 016128 249 PNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLL 325 (394)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~ 325 (394)
|+...+......+.+.|++++|+..|+..... .+.++..|..+..+|.+.|++++|+..|++..+ |+.. +|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777888888899999999999999888763 345677888888899999999999999998887 7666 888899
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 326 GACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
.++...|++++|+..|+++.++.|.+...+...+..+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887766666555555554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3.7e-09 Score=73.26 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=64.3
Q ss_pred HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCc
Q 016128 258 LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNS 334 (394)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 334 (394)
...+...|++++|+..|+...+. .+.++..|..+..+|.+.|++++|+..+.+..+ |+.. .|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44555666666666666666542 234455666666666666666666666666654 4444 666666666677777
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
++|+..|+++.+..|.++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777767666665555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=8.5e-08 Score=78.14 Aligned_cols=199 Identities=9% Similarity=-0.025 Sum_probs=101.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCC-----CHHHHHHH
Q 016128 120 ISGFSQLGMRFEAFKLFEKMQST----GMVP-SLKCVTSVLSACADLSALKLGKETHGHVIRADLNK-----DESMATAL 189 (394)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 189 (394)
...|...|++++|...|.+..+. +-.+ ...+|..+..+|.+.|++++|.+.++...+..... ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566666666666666665432 1111 12355556666666666666666666544321110 12334444
Q ss_pred HHHHHH-cCCchHHHHHHHHhhcC----CC---ChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH------hhHH
Q 016128 190 ISMYMK-CGQPSWARRFFDQFEIK----PD---DPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNS------ASFV 255 (394)
Q Consensus 190 ~~~~~~-~g~~~~a~~~~~~~~~~----~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 255 (394)
...|.. .|++++|...+++.... +. ...++..+...+...|++++|+..|++.......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444433 46667776666654221 11 1223566667777777777777777776654221111 1123
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCC---HhhHHHHHHHHHh--cCcHHHHHHHHHhCCCCCh
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPK---QEHFGCMVDLLGR--SGRLDEARELIRELPEPTV 318 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~ 318 (394)
..+..+...++++.|...++...+...--++ ......++.++.. .+.+++|+..|+++..-|.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 3334455667777777777776543100011 1233445555544 2346677777766665443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=2.5e-09 Score=82.35 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=83.4
Q ss_pred CChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC-CHhhHHH
Q 016128 214 DDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP-KQEHFGC 292 (394)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 292 (394)
|+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 455566777889999999999999999998875 34778899999999999999999999999984 344 4678888
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC
Q 016128 293 MVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
+..+|.+.|++++|...|++..+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=7.2e-08 Score=73.08 Aligned_cols=87 Identities=8% Similarity=-0.124 Sum_probs=69.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHH
Q 016128 53 VDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEA 132 (394)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 132 (394)
...+...|+++.|++.|+++. +++..+|..+..+|...|++++|++.|++..+.... +...|..+..+|.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 345667788888888888876 677778888888888888888888888888887543 677888888888888888888
Q ss_pred HHHHHHHHh
Q 016128 133 FKLFEKMQS 141 (394)
Q Consensus 133 ~~~~~~m~~ 141 (394)
+..|++...
T Consensus 90 ~~~~~kAl~ 98 (192)
T d1hh8a_ 90 IKDLKEALI 98 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3e-09 Score=73.75 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=84.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 292 CMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
.-...+.+.|++++|+..|++..+ |+.. .|..+..++...|++++|+..++++.+++|.++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 346778899999999999999976 7777 8999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhhcc
Q 016128 369 EDVGRIRQMINDRQ 382 (394)
Q Consensus 369 ~~a~~~~~~m~~~~ 382 (394)
++|+..+++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.7e-08 Score=76.65 Aligned_cols=126 Identities=15% Similarity=0.048 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHH
Q 016128 219 WNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLG 298 (394)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (394)
|+. ...+...|+++.|++.|.++ ..|+..++..+..++...|++++|+..|++..+. -+.+...|..+..+|.
T Consensus 9 ~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 9 WNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHH
Confidence 443 55677889999999988764 3567788888899999999999999999998863 2445678888888999
Q ss_pred hcCcHHHHHHHHHhCCC--C----------------Ch-hhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 299 RSGRLDEARELIRELPE--P----------------TV-SVYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 299 ~~g~~~~a~~~~~~~~~--~----------------~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
+.|++++|...|++... + .. .++..+..++...|++++|.+.++++.+..|..
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999988887532 0 11 145567778888999999999999888888754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.87 E-value=2.4e-09 Score=73.54 Aligned_cols=89 Identities=10% Similarity=-0.094 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 291 GCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
..+...+.+.|++++|...|++... |+.. .|..+..++.+.|++++|+..++++.+++|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 3457778899999999999999886 7777 999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhh
Q 016128 368 WEDVGRIRQMIN 379 (394)
Q Consensus 368 ~~~a~~~~~~m~ 379 (394)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.1e-08 Score=75.37 Aligned_cols=117 Identities=8% Similarity=-0.088 Sum_probs=92.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHL 332 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g 332 (394)
.....|.+.|++++|...|++..+. -+.+...|..+..+|...|++++|...|++..+ |+.. +|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455677889999999999888864 245677888888899999999999999998876 7776 8999999999999
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHH--hhcCCcccHHHH
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIY--AGLGRWEDVGRI 374 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 374 (394)
++++|...++++....|.++..+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888877766553 344455555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=1.3e-08 Score=83.03 Aligned_cols=161 Identities=11% Similarity=0.040 Sum_probs=76.8
Q ss_pred HHHHHHcCCchHHHHHHHHhhcC---CCC----hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCC---C--CCHhhHHHH
Q 016128 190 ISMYMKCGQPSWARRFFDQFEIK---PDD----PAFWNAMISGYGRNGEYESAVEIFDLMQQEKV---K--PNSASFVAV 257 (394)
Q Consensus 190 ~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l 257 (394)
...|...|++++|...|.+.... ..+ ..+|..+..+|.+.|++++|++.+++..+.-. . ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44455556666666665553221 011 23355556666666666666666665433210 0 012334444
Q ss_pred HHHHH-ccCCHHHHHHHHHHchhcC---CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh--------hHH
Q 016128 258 LSACG-HAGHVDKALQIFTMMDDDF---GLKP-KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS--------VYH 322 (394)
Q Consensus 258 ~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~--------~~~ 322 (394)
...|. ..|++++|+..+++..+.. +.++ -..++..+...|...|++++|...|+++.. ++.. .+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 44443 3466666666665543210 1111 123345556666666666666666665432 1110 123
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 016128 323 SLLGACWCHLNSDLGEEMAMKLQEMEPE 350 (394)
Q Consensus 323 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (394)
..+..+...|+++.|...++++.+.+|.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 3334445566666666666666666553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.1e-08 Score=75.25 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 016128 291 GCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGR 367 (394)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (394)
......|.+.|++++|...|++..+ |+.. .|..+..++...|++++|+..|+++++.+|.++.+|..++.++...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 3445678899999999999999987 7777 999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhhcc
Q 016128 368 WEDVGRIRQMINDRQ 382 (394)
Q Consensus 368 ~~~a~~~~~~m~~~~ 382 (394)
+++|...+++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.72 E-value=1.2e-05 Score=64.09 Aligned_cols=229 Identities=12% Similarity=-0.061 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cchhhHHHHHHHHHHHcCCCCCHHHHH
Q 016128 112 DPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACAD----LSALKLGKETHGHVIRADLNKDESMAT 187 (394)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (394)
|+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..+...+...+....+.+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45566667777777778888888887777665 33444445554443 345666666666655544 233333
Q ss_pred HHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 016128 188 ALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGH 263 (394)
Q Consensus 188 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (394)
.+...+.. ..+.+.|...++....... ......+...+... ...
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~-------------------------------~~~ 122 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDG-------------------------------KVV 122 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHC-------------------------------SSS
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh-hhHHHhhcccccCC-------------------------------Ccc
Confidence 33333332 1233444444444433211 11112222222110 001
Q ss_pred cCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHhCCCCChh-hHHHHHHHHHh----cCCc
Q 016128 264 AGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGR----SGRLDEARELIRELPEPTVS-VYHSLLGACWC----HLNS 334 (394)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~----~g~~ 334 (394)
......+...+..... ..+...+..|...|.. ..+...+..+++...++... ....+...+.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 2223333333333322 1223333333333332 23344444444444332222 44444444443 4567
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHhh----cCCcccHHHHHHHhhhcccc
Q 016128 335 DLGEEMAMKLQEMEPENPTPFVILSNIYAG----LGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 384 (394)
++|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|-.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 77777777776664 34566667776664 33677777777777666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=8.4e-08 Score=71.15 Aligned_cols=82 Identities=12% Similarity=-0.055 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
+|+.+..+|.+.|++++|+..++.... |+.. +|..++.++...|++++|+..|+++.+++|.++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 566778889999999999999998886 7666 9999999999999999999999999999999999988888877665
Q ss_pred CCccc
Q 016128 366 GRWED 370 (394)
Q Consensus 366 g~~~~ 370 (394)
+...+
T Consensus 144 ~~~~~ 148 (170)
T d1p5qa1 144 RRQLA 148 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.67 E-value=4.1e-05 Score=60.77 Aligned_cols=223 Identities=9% Similarity=-0.052 Sum_probs=118.0
Q ss_pred hHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHh----cCChhHHHHHHHHhccCCChhHHHHHHH
Q 016128 11 SVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLK----CGCLPCAHNVFQELKGSRNILTWNTMIA 86 (394)
Q Consensus 11 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ll~ 86 (394)
+..+..|-..+.+.+++++|.+.|++..+.| +...+..|..+|.. ..+...|...+.......+......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccc
Confidence 4455555556666777777777777776655 44555556666655 4466667766666654444444444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 016128 87 GMML----NGRSEKAMELFEGLAHEGFKPDPATWNSMISGFS----QLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSAC 158 (394)
Q Consensus 87 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 158 (394)
.+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..+...+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhh
Confidence 4432 34566677777766665432 22222222222 2334555555555554432 344444455444
Q ss_pred hc----cchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh--
Q 016128 159 AD----LSALKLGKETHGHVIRADLNKDESMATALISMYMK----CGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR-- 228 (394)
Q Consensus 159 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-- 228 (394)
.. ..+...+...++...+.| +......+...|.. ..++++|...|++.... .++..+..|...|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-cCHHHHHHHHHHHHcCC
Confidence 43 334455555555555543 34444445544444 34566666666665443 244444555555543
Q ss_pred --cCChhhHHHHHHHHHHcC
Q 016128 229 --NGEYESAVEIFDLMQQEK 246 (394)
Q Consensus 229 --~~~~~~a~~~~~~~~~~~ 246 (394)
..+.++|.+.|++..+.|
T Consensus 229 g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHCc
Confidence 235666666666665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4.8e-08 Score=67.69 Aligned_cols=105 Identities=15% Similarity=-0.002 Sum_probs=80.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcC---cHHHHHHHHHhCCC--CCh--h-hHHHHHH
Q 016128 255 VAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSG---RLDEARELIRELPE--PTV--S-VYHSLLG 326 (394)
Q Consensus 255 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~--~~~--~-~~~~l~~ 326 (394)
..++..+...+++++|++.|+..... -+.++.++..+..++.+.+ ++++|+.+|+++.. |+. . +|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677777888899999999888763 3456778888888887654 44568888888876 322 2 6778889
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 016128 327 ACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNI 361 (394)
Q Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (394)
+|.+.|++++|++.|+++++++|.+..+.......
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999887766555433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.61 E-value=7.9e-05 Score=60.66 Aligned_cols=135 Identities=11% Similarity=0.079 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHH
Q 016128 9 PNSVTFISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGM 88 (394)
Q Consensus 9 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~ 88 (394)
||..--..+...|.+.|.++.|..+|..+.. |..++.++.+.++++.|.+++.+.. +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 3444444555556666666666666654332 3445555566666666666655443 444555556666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 016128 89 MLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADL 161 (394)
Q Consensus 89 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 161 (394)
.+......| .+...+...++.....++..|-..|.+++...+++..... -.++...++.++..|++.
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 555544332 1222223334444555666666666666666666655432 133445555566555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.59 E-value=9e-05 Score=60.32 Aligned_cols=269 Identities=11% Similarity=0.076 Sum_probs=169.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016128 43 QSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISG 122 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 122 (394)
.|+..--..+.+.|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 4566666778888999999999999999877 47778889999999999988876542 77799999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 123 FSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
+.......-+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++-
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHH
Confidence 8887766543 23333344566677789999999999999999999876543 567888899999998864 4455
Q ss_pred HHHHHHhhcCCCC----------hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 016128 203 RRFFDQFEIKPDD----------PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQ 272 (394)
Q Consensus 203 ~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 272 (394)
.+.+...... -+ ...|..++-.|.+.|+++.|..++-. . .++.......+..+.+..+.+...+
T Consensus 152 ~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~ 225 (336)
T d1b89a_ 152 REHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYR 225 (336)
T ss_dssp HHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred HHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHH
Confidence 5555443221 11 11256666667777777766655322 1 2334344455666667777776666
Q ss_pred HHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCC-------------CCChh-hHHHHHHHHHhcCCchHHH
Q 016128 273 IFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELP-------------EPTVS-VYHSLLGACWCHLNSDLGE 338 (394)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------~~~~~-~~~~l~~~~~~~g~~~~a~ 338 (394)
......+. ++...+.++......-+..+..+.+++-. +.+.. +.+++...|...++++.-.
T Consensus 226 ~i~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 226 AIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHHHH
Confidence 66655543 23444555555555555555555555443 33333 8899999999999976544
Q ss_pred HHH
Q 016128 339 EMA 341 (394)
Q Consensus 339 ~~~ 341 (394)
...
T Consensus 301 ~~i 303 (336)
T d1b89a_ 301 TSI 303 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=7.3e-08 Score=67.72 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=27.3
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 016128 293 MVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENP 352 (394)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (394)
+...+.+.|++++|+..|++..+ |+.. ++..+..+|...|++++|+..++++++++|.++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~ 72 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence 33444444444444444444443 3333 444444444444444444444444444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.53 E-value=3.6e-07 Score=66.30 Aligned_cols=76 Identities=9% Similarity=-0.092 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYA 363 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (394)
.+|..+..+|.+.|++++|++.+++..+ |+.. +|..++.++...|++++|+..|+++.+++|.++.+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3566677788888888888888888776 6666 88888888888888888888888888888888777666655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=2.7e-07 Score=68.37 Aligned_cols=83 Identities=13% Similarity=-0.046 Sum_probs=69.7
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
....+..+..++.+.|++++|+..+++..+ |+.. .|..+..++...|++++|++.|+++.+++|.++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667788889999999999999999887 7666 9999999999999999999999999999999988888877766
Q ss_pred hhcCCc
Q 016128 363 AGLGRW 368 (394)
Q Consensus 363 ~~~g~~ 368 (394)
.+....
T Consensus 156 ~~l~~~ 161 (169)
T d1ihga1 156 QKIKAQ 161 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.48 E-value=6.2e-07 Score=66.20 Aligned_cols=92 Identities=10% Similarity=-0.088 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 016128 289 HFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGL 365 (394)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (394)
+|..+..+|.+.|++++|+..+++... |+.. +|..+..++...|++++|...|+++.+++|.++.+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 566677889999999999999998886 7666 9999999999999999999999999999999998888888877666
Q ss_pred CCccc-HHHHHHHhhh
Q 016128 366 GRWED-VGRIRQMIND 380 (394)
Q Consensus 366 g~~~~-a~~~~~~m~~ 380 (394)
+...+ ..+++..|-+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 54443 4445554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=1.3e-06 Score=59.36 Aligned_cols=85 Identities=8% Similarity=0.027 Sum_probs=38.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhH
Q 016128 87 GMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKL 166 (394)
Q Consensus 87 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (394)
.+.+.|++++|+..|++....... +..+|..+..++.+.|++++|+..|++..+.. +.+...+..+..++...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 344444444444444444443221 34444444444444444444444444444432 2234444444444444444444
Q ss_pred HHHHHHH
Q 016128 167 GKETHGH 173 (394)
Q Consensus 167 a~~~~~~ 173 (394)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.4e-07 Score=68.59 Aligned_cols=112 Identities=9% Similarity=-0.040 Sum_probs=80.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcC
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHL 332 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 332 (394)
.+......+.+.|++++|+..|.+........+.... ........+ ...+|+.+..+|.+.|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~------~~~~~~nla~~y~k~~ 76 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQAL------RLASHLNLAMCHLKLQ 76 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchh------HHHHHHHHHHHHHhhh
Confidence 3444555667777777777777766643211111000 000000000 0126778889999999
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 333 NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
++++|+..++++++++|.++.++..++.+|...|++++|+..|+++.+..
T Consensus 77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.7e-08 Score=87.63 Aligned_cols=224 Identities=9% Similarity=-0.045 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHh
Q 016128 131 EAFKLFEKMQSTGMVPS-LKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWARRFFDQF 209 (394)
Q Consensus 131 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 209 (394)
+|.+.|++..+. .|+ ...+..+..++...+++++| +++++..+.. .....+.... +. ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~-Lw-~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQD-LW-NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHH-HH-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHH-HH-HHHHHHHHHHHHHh
Confidence 577778777653 333 23445555666666777655 5666544311 0111111111 11 11244566666665
Q ss_pred hcCCCChhh--HHHHHHH--HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC
Q 016128 210 EIKPDDPAF--WNAMISG--YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP 285 (394)
Q Consensus 210 ~~~~~~~~~--~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (394)
......+.. ....... ....+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+...... .|
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---HH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH
Confidence 544222221 1111111 222344555555444443332 234556667777777888888888776655432 11
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHhCCC--CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 016128 286 KQEHFGCMVDLLGRSGRLDEARELIRELPE--PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIY 362 (394)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (394)
..++..+...+...|++++|...|++..+ |+.. .|+.++..+...|+..+|+..|.++....|+.+.++..|...+
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 24566778888888888999888888876 7777 8888888888888888898888888888888888888888877
Q ss_pred hhcCC
Q 016128 363 AGLGR 367 (394)
Q Consensus 363 ~~~g~ 367 (394)
.+..+
T Consensus 231 ~~~~~ 235 (497)
T d1ya0a1 231 SKALE 235 (497)
T ss_dssp HHHTT
T ss_pred HHhhh
Confidence 65543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.8e-06 Score=56.84 Aligned_cols=92 Identities=12% Similarity=-0.025 Sum_probs=63.9
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCC---hhHHHHHHHHhcc-CCCh---hHHHHHHHH
Q 016128 15 ISVISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGC---LPCAHNVFQELKG-SRNI---LTWNTMIAG 87 (394)
Q Consensus 15 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~---~~~~~ll~~ 87 (394)
..+++.+...+++++|.+.|+..++.+ |.++.++..+..++.+.++ +++|+.+|+++.. .|+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456677777788888888888888776 6677777777777766443 4457777777653 2222 256667777
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 016128 88 MMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 88 ~~~~~~~~~a~~~~~~m~~~ 107 (394)
|.+.|++++|++.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777775
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=4.9e-07 Score=66.89 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
.|..+..++.+.|++++|+..+.++++++|.++.+|..++.++.+.|++++|+..|+++.+..
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 788889999999999999999999999999999999999999999999999999999998753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=7.5e-07 Score=64.56 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=80.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHchhcCCCCC---CHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHH
Q 016128 253 SFVAVLSACGHAGHVDKALQIFTMMDDDFGLKP---KQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACW 329 (394)
Q Consensus 253 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 329 (394)
.+..-...+.+.|++++|+..|..........+ +....... .. ....+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-----------------KN---IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-----------------HH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-----------------hh---HHHHHHhhHHHHHH
Confidence 444555667777788888877777664311111 11100000 00 01236788999999
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 330 CHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+.|++++|++.++++++++|.+..+|..++.++...|++++|+..|++..+..
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=1e-06 Score=65.51 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=84.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCch
Q 016128 256 AVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPEPTVSVYHSLLGACWCHLNSD 335 (394)
Q Consensus 256 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 335 (394)
.........|++++|...|.....-+.-.+-... ..+.+ +...-..+.......+..++.++...|+++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALVEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 3345667889999999999988764221110000 00000 000001111011226778889999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhh-----ccccccCC
Q 016128 336 LGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMIND-----RQLTKLPG 388 (394)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 388 (394)
+|+..++++.+.+|.+...|..++.++.+.|++++|++.|+++.+ .|+.|++.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999998743 58888764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.27 E-value=1.3e-06 Score=64.47 Aligned_cols=63 Identities=8% Similarity=-0.037 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQ 382 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 382 (394)
+|..+..++.+.|++++|+..++++++++|.++.+|..++.++...|++++|+..++++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 677788899999999999999999999999999999999999999999999999999988653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=7e-07 Score=78.44 Aligned_cols=108 Identities=7% Similarity=-0.125 Sum_probs=36.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016128 115 TWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYM 194 (394)
Q Consensus 115 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (394)
.+..+...+.+.|+.++|...+....... | ..++..+...+...|++++|...|++..+.. +.+...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34444444444444444444443332210 1 1233344444444445555555555544443 123344444555555
Q ss_pred HcCCchHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 016128 195 KCGQPSWARRFFDQFEIK-PDDPAFWNAMISGY 226 (394)
Q Consensus 195 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~ 226 (394)
..|+..+|...|.+.... ++-+.++..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 555555554444443322 33344444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.2e-05 Score=53.04 Aligned_cols=56 Identities=5% Similarity=-0.007 Sum_probs=27.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhc
Q 016128 17 VISACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELK 73 (394)
Q Consensus 17 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 73 (394)
+-..+.+.|++++|++.|+..++.+ |.+..++..+..+|.+.|++++|+..++++.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344445555555555555555444 3344455555555555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.7e-06 Score=55.08 Aligned_cols=75 Identities=15% Similarity=0.015 Sum_probs=58.2
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHhCCC---------CChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 287 QEHFGCMVDLLGRSGRLDEARELIRELPE---------PTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
...+..+...+.+.|++++|...|++..+ ++.. +++.+..++.+.|++++|+..++++++++|.++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 33444667777788888888777776643 2333 7888999999999999999999999999999988887
Q ss_pred HHHHH
Q 016128 357 ILSNI 361 (394)
Q Consensus 357 ~l~~~ 361 (394)
.+...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.13 E-value=3e-06 Score=60.53 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCC--CChh-hHHHHHHHHHhcC-----------CchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCc
Q 016128 303 LDEARELIRELPE--PTVS-VYHSLLGACWCHL-----------NSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRW 368 (394)
Q Consensus 303 ~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (394)
+++|+..|++..+ |+.. +|..+..+|...| .+++|.+.|+++.+++|.+...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 3455555555543 4444 5555555554433 36889999999999999887666666444
Q ss_pred ccHHHHHHHhhhccc
Q 016128 369 EDVGRIRQMINDRQL 383 (394)
Q Consensus 369 ~~a~~~~~~m~~~~~ 383 (394)
.+|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 456777777766664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=4.2e-05 Score=56.48 Aligned_cols=72 Identities=15% Similarity=0.316 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 016128 78 ILTWNTMIAGMMLNGRSEKAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS-----TGMVPSLKC 150 (394)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 150 (394)
...+..+...+.+.|++++|+..++.+...... +...|..++.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345666777777777777777777777776433 677777777777777777777777777632 466666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=3.9e-05 Score=54.51 Aligned_cols=69 Identities=16% Similarity=-0.047 Sum_probs=46.1
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCCh----------hHHHHHHHHhcc--CCChhHHHHHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCL----------PCAHNVFQELKG--SRNILTWNTMIAGM 88 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~--~~~~~~~~~ll~~~ 88 (394)
|-+.+.+++|++.|+..++.. |.++.++..+..++...+++ ++|+..|++... +.+..+|..+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 456788999999999999887 77888888888888755443 455555555443 33444555555544
Q ss_pred Hh
Q 016128 89 ML 90 (394)
Q Consensus 89 ~~ 90 (394)
..
T Consensus 86 ~~ 87 (145)
T d1zu2a1 86 TS 87 (145)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.99 E-value=1.2e-05 Score=63.64 Aligned_cols=127 Identities=9% Similarity=0.012 Sum_probs=85.8
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCC-HhhHHHHHHHHHhcCcHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPK-QEHFGCMVDLLGRSGRLD 304 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 304 (394)
..+.|++++|+..+++..+... -|...+..++..++..|++++|.+.++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 4567888888888888887743 36778888888888888888888888888753 343 344444444554444444
Q ss_pred HHHHHHHhCC---CCChh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHH
Q 016128 305 EARELIRELP---EPTVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFV 356 (394)
Q Consensus 305 ~a~~~~~~~~---~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 356 (394)
++..-..... .|+.. .+......+...|+.++|.+.++++.+..|..+..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 4433222211 13333 4455566778889999999999999999888776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.90 E-value=1.4e-05 Score=57.85 Aligned_cols=62 Identities=15% Similarity=-0.068 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC-----------CchHHHHHHHHhhcCCcccHHHHHHHhhhc
Q 016128 320 VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN-----------PTPFVILSNIYAGLGRWEDVGRIRQMINDR 381 (394)
Q Consensus 320 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 381 (394)
+|+.+..+|...|++++|+..+++++++.|.. ..++..++.+|...|++++|+..|++..+.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777788888877777777653211 124667788888888888888888887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.89 E-value=8.1e-06 Score=64.55 Aligned_cols=121 Identities=7% Similarity=-0.105 Sum_probs=72.7
Q ss_pred hhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhcc-CCC-hhHHHHHHHHHHhcCCHHHHH
Q 016128 21 CASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKG-SRN-ILTWNTMIAGMMLNGRSEKAM 98 (394)
Q Consensus 21 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~ll~~~~~~~~~~~a~ 98 (394)
..+.|++++|++.++..++.. |.+...+..+...++..|++++|...|+.... .|+ ...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 446688888888888888776 67778888888888888888888888887765 343 334444444443333333222
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 016128 99 ELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQST 142 (394)
Q Consensus 99 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 142 (394)
.-...-...+.+++...+......+...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111111111222333444455667778888888887777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.82 E-value=3e-05 Score=56.03 Aligned_cols=64 Identities=16% Similarity=-0.110 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHhCCC---------C----Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 016128 288 EHFGCMVDLLGRSGRLDEARELIRELPE---------P----TVS-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPEN 351 (394)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (394)
..|+.+..+|.+.|++++|...+++... + ... .+..+..+|...|++++|+..|+++.++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3455666666677776666666555432 1 111 56778888999999999999999988876533
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.041 Score=46.65 Aligned_cols=318 Identities=8% Similarity=-0.052 Sum_probs=167.2
Q ss_pred HHhhhhHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH--hcCChhHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHH
Q 016128 19 SACASLLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYL--KCGCLPCAHNVFQELKGSRNI-LTWNTMIAGMMLNGRSE 95 (394)
Q Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 95 (394)
....+.|+...+.++...+.. .| ...|-..-..-. .....++...++++.+..|-. ..-...+..+.+.++++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~d--yp--L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~ 89 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKD--YP--LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWR 89 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTT--ST--THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHhhhcC--CC--CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHH
Confidence 334567788888887777642 22 233333322222 345667777777776543322 22344567778888887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccchhhHH--HHHHHH
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQSTGMVPSLKCVTSVLSACADLSALKLG--KETHGH 173 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~ 173 (394)
..+..+. ..+++...-.....+....|+.++|...+..+-..|.. .+..+..+...+...|.+... .+-+..
T Consensus 90 ~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt~~~~~~R~~~ 163 (450)
T d1qsaa1 90 GLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRL 163 (450)
T ss_dssp HHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6554432 22335555556777788889998888888777655421 222333344333333222111 111111
Q ss_pred HHHcC-----------CCC-CHHHHHHHHHHHHHcCCchHHHHHHHHhhcCCCChhhHHHHHHHHhh--cCChhhHHHHH
Q 016128 174 VIRAD-----------LNK-DESMATALISMYMKCGQPSWARRFFDQFEIKPDDPAFWNAMISGYGR--NGEYESAVEIF 239 (394)
Q Consensus 174 ~~~~~-----------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~ 239 (394)
+...| +++ ........+... .+...+....... +.+......+..++.+ ..+.+.+..++
T Consensus 164 ~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~---~~p~~~~~~~~~~---~~~~~~~~~~~~~l~rla~~d~~~a~~~l 237 (450)
T d1qsaa1 164 AMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT---GATDFTRQMAAVAFASVARQDAENARLMI 237 (450)
T ss_dssp HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHcCChhhHHHHHhhCChhHHHHHHHHHHHH---hChHhHHHHHhcC---CCChhhhHHHHHHHHHHhccChhHHHHHH
Confidence 11111 011 111112222211 1222222222221 2233333333333333 35778888888
Q ss_pred HHHHHcCCCCCHhhHHHH----HHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHhCCC
Q 016128 240 DLMQQEKVKPNSASFVAV----LSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDEARELIRELPE 315 (394)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (394)
......... +......+ .......+..+.+..++...... ..+.....-.+......+++..+...++.+..
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~ 313 (450)
T d1qsaa1 238 PSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (450)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred Hhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHHHHHHHhcCc
Confidence 887665322 22222222 22223456677777777766543 34555555566666778899999999998876
Q ss_pred -CCh-h-hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 016128 316 -PTV-S-VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSN 360 (394)
Q Consensus 316 -~~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (394)
+.. . -.--+.+++...|+.+.|...|..+.. . +..|..|+.
T Consensus 314 ~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~---~~fYG~LAa 357 (450)
T d1qsaa1 314 EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-Q---RGFYPMVAA 357 (450)
T ss_dssp TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S---CSHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-C---CChHHHHHH
Confidence 211 2 335566888899999999999988764 2 235555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.24 E-value=0.01 Score=39.14 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=102.7
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHHHHHhcCcHHH
Q 016128 226 YGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVDLLGRSGRLDE 305 (394)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (394)
+.-.|..++..+++.+.... .+..-|+-+|.-....-+-+-..+.++.+-+.+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 45568888888888888765 2556677777777777777888888888766444333 233333
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcccHHHHHHHhhhcccc
Q 016128 306 ARELIRELPEPTVSVYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPFVILSNIYAGLGRWEDVGRIRQMINDRQLT 384 (394)
Q Consensus 306 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 384 (394)
....+-.+. .+....+..+..+..+|+-+.-.++++.+.+.+..+|.....++.+|.+.|...++.+++.++.+.|++
T Consensus 75 vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 222345566677888999999999999988888889999999999999999999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0035 Score=40.21 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016128 81 WNTMIAGMMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~m~~~ 107 (394)
++.+..++.+.|++++|+..+++..+.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.06 E-value=0.017 Score=38.14 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=29.3
Q ss_pred hcCChhHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016128 58 KCGCLPCAHNVFQELKGSRNILTWNTMIAGMMLNGRSEKAMELFEGLAH 106 (394)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 106 (394)
..|.+++..++..+...+.+..-||-++--....-+-+-..+.++..-+
T Consensus 14 ldG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~ 62 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS 62 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh
Confidence 4566677777766665445555566666666655666655555555433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.90 E-value=0.027 Score=38.45 Aligned_cols=112 Identities=12% Similarity=-0.113 Sum_probs=58.0
Q ss_pred hHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhcCChhHHHHHHHHhccCCChhHHHHHHHHHHh----cCCHHHHHH
Q 016128 24 LLYLQFGRQVHGLTLKIEKQSDTMIGTALVDMYLKCGCLPCAHNVFQELKGSRNILTWNTMIAGMML----NGRSEKAME 99 (394)
Q Consensus 24 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~ 99 (394)
..|+++|.++|++..+.| +......|.. ....+.++|.+.+++.-+..++.....|...|.. ..+.++|.+
T Consensus 6 ~kd~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 357788888888877766 2222222221 2234556666666665544445554444444443 234556666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 016128 100 LFEGLAHEGFKPDPATWNSMISGFSQ----LGMRFEAFKLFEKMQSTG 143 (394)
Q Consensus 100 ~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 143 (394)
+|++..+.| ++.....|...|.. ..+.++|..+|+...+.|
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 666655543 33344444444433 234555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.48 E-value=0.062 Score=36.51 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=7.7
Q ss_pred ChhhHHHHHHHHHHcC
Q 016128 231 EYESAVEIFDLMQQEK 246 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~ 246 (394)
+..+|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4445555555544443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.015 Score=38.76 Aligned_cols=71 Identities=11% Similarity=-0.041 Sum_probs=47.7
Q ss_pred CCHhhHHHHHHHHHhcC---cHHHHHHHHHhCCC--CChh--hHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchH
Q 016128 285 PKQEHFGCMVDLLGRSG---RLDEARELIRELPE--PTVS--VYHSLLGACWCHLNSDLGEEMAMKLQEMEPENPTPF 355 (394)
Q Consensus 285 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 355 (394)
++..+--.+..++.++. +.++++.+|+++.. |... .+-.|..+|.+.|++++|.+.++++++++|.+..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 44455555555565543 44567777776654 4332 566677788888888888888888888888876553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.52 E-value=0.19 Score=31.23 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcCCCCCCHhhHHHHHH
Q 016128 231 EYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDFGLKPKQEHFGCMVD 295 (394)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (394)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+ +.++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 55567777888888888999999999999999999999999999998874 3334556666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.31 Score=32.17 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=40.2
Q ss_pred CCchHHHHHHHHHHHhc---CChhHHHHHHHHhcc-CC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016128 43 QSDTMIGTALVDMYLKC---GCLPCAHNVFQELKG-SR-N-ILTWNTMIAGMMLNGRSEKAMELFEGLAHE 107 (394)
Q Consensus 43 ~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~-~~-~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 107 (394)
.++..+--....+++++ .++++++.+|+++.. .| + ...+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34455555555556554 345677777777653 23 2 234455666777778888888888777776
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=4 Score=33.78 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHhhccchhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCchHH
Q 016128 127 GMRFEAFKLFEKMQSTGMVPSLKCVT----SVLSACADLSALKLGKETHGHVIRADLNKDESMATALISMYMKCGQPSWA 202 (394)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 202 (394)
.+.+.+..++......... +...+. .+.......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 4667777777776543211 222221 22223334555666666666655543 3444555555566677888888
Q ss_pred HHHHHHhhcCCCC-hhhHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHchhcC
Q 016128 203 RRFFDQFEIKPDD-PAFWNAMISGYGRNGEYESAVEIFDLMQQEKVKPNSASFVAVLSACGHAGHVDKALQIFTMMDDDF 281 (394)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 281 (394)
...+..+...+.. ..-.--+..++...|+.+.|...|...... ++ |-..+.+- +.|..- .+...
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~-------~~~~~- 369 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEY-------ELKID- 369 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCC-------CCCCC-
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCC-------CCCcC-
Confidence 8888877654222 222345567778888888888888887542 22 32222211 112110 00000
Q ss_pred CCC--CCHh----hHHHHHHHHHhcCcHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHHHHHHHHH
Q 016128 282 GLK--PKQE----HFGCMVDLLGRSGRLDEARELIRELPE-PTVSVYHSLLGACWCHLNSDLGEEMAMKLQ 345 (394)
Q Consensus 282 ~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 345 (394)
..+ +... .-..-+..+...|+...|...+..+.. .+......+.....+.|.++.|+....+..
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 111 1110 011235567788888888887776654 444466667777788888888887776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.04 E-value=1.9 Score=26.69 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 016128 96 KAMELFEGLAHEGFKPDPATWNSMISGFSQLGMRFEAFKLFEKMQS 141 (394)
Q Consensus 96 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 141 (394)
++.+-++.+....+.|++....+.+++|.+.+++.-|.++|+..+.
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666666666666665553
|