Citrus Sinensis ID: 016134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccEEEEcccccEEEEccccccEEEcccccccccccccccEEEEEcccccccccccccccEEEEEEEccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEcccccccEEcccccEEEEccccccEEEEEEcccEEEEEccccccccEEEEEEcccEEEEccccccEEEEEcccccEEEccccccccEEEEEEcccEEEEEcccccEEEEEcccccccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEcccccEEcccccccEEEEEEEccccEEEEEcccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEcccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEccccEEEEcccccEEEEEEccccccEEEEEccccccccEEEcccccEEEEEEEccccccEEEEcccccEEEEEEcccccEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEcccccEEEEEcccccEEEEEEcccEEEEcccccccccEEEEEccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccccccEEEEEccccEEEEEEcccccEEEEEccccEEEEEEEccccEEEEEccccEEEEEEcccccc
Coil and Loop (DISEMBL)
mdvkaskrftdqrersffnpingqagggvgggwptNKVVCVYVLegrcnrnpcrfahtessslllsnpklakksppsynrlknnlwvssgsedriphvrnrenpgytgpknsssasstvsdesgdkstskkttlknvcchwllgncvrgdecrflhswfcgeGLTMLAKLEGhekavsgialplrsdklfsgsrdgtawniessaefsldgpvgeVYSMVVANEMlfagaqdghtrpvtclavgrsrlcsgsmdntirvweldtlepvmtlndhtdapmsllCWDQFLLSCSLDHTIKVWFATGrgnleaaythkedngvlalgglndpdgkpvlicacndntvhlyelpsfmergrifskhevrvieigpdklfftgdgaGMLGVWKLLAKPS
Flexible Loop (DISEMBL)
mdvkaskrftdqrersffnpingqagggvgggwpTNKVVCVYVLEGRCNRNPCRFAHtessslllsnpklakksppsynrlknnlwvssgsedriphvrnrenpgytgpknsssasstvsdesgdkstskkttlknvcCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFagaqdghtrpVTCLAVgrsrlcsgsmdNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIgpdklfftgdgAGMLGVWKLLAKPS
Low Complexity Region (SEG)
MDVKASKRFTDQRERSFFNPINgqagggvgggWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNsssasstvsdesGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS
Disordered region (IsUnstruct)
*****************FNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAH***************************************************************************TLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL****
Disordered Region (DISOPRED)
***********QRERSF********************VVCVYVLEGRCNRNPCRFAHTESSSLL********************LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK**
Disordered Region (DISEMBL)
**********DQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPG**************************TTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS
Disordered Region (DISPRO)
*******RFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q9FNZ1	443	Zinc finger CCCH domain-c	yes	no	0.888	0.790	0.427	3e-88
Q9FNZ2	430	Zinc finger CCCH domain-c	no	no	0.842	0.772	0.423	7e-88
Q0DYP5	435	Zinc finger CCCH domain-c	yes	no	0.916	0.829	0.410	7e-85
Q9FE91	419	Zinc finger CCCH domain-c	no	no	0.652	0.613	0.410	8e-61
Q9FKR9	472	Zinc finger CCCH domain-c	no	no	0.718	0.599	0.379	9e-59
P90648	732	Myosin heavy chain kinase	yes	no	0.436	0.234	0.310	1e-11
P87053	605	F-box/WD repeat-containin	yes	no	0.446	0.290	0.309	2e-11
Q6BU94	417	Pre-mRNA-splicing factor	no	no	0.459	0.434	0.263	2e-09
Q969H0	707	F-box/WD repeat-containin	yes	no	0.5	0.278	0.273	6e-09
Q8VBV4	629	F-box/WD repeat-containin	no	no	0.494	0.310	0.270	1e-08

>sp|Q9FNZ1|C3H63_ARATH Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1

 Score =  325 bits (834), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/442 (42%), Positives = 246/442 (55%), Gaps = 92/442 (20%)

Query: 26  GGGVGGGWP-----TNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNR 80
           GGG G   P     T + VC +   GRCNR+PC + H E     L  P   +   P Y  
Sbjct: 17  GGGGGSTRPMAPTDTRQKVCFHWRAGRCNRSPCPYLHRE-----LPGPGPGQGQGPGYTN 71

Query: 81  LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH 140
            +         E       +R  PG+ G     ++SS+     G+++ +K    + VC  
Sbjct: 72  KR------VAEESGFAGPSHRRGPGFNG-----NSSSSWGRFGGNRTVTKT---EKVCNF 117

Query: 141 WLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--- 197
           W+ GNC  GD+CR+LH W  GE   +L +L+GHEK VSGIALP  SDKL++GS+D T   
Sbjct: 118 WVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRV 177

Query: 198 -------------------------------------AWNIESSAEFSLDGPVGEVYSMV 220
                                                AWNIE++A+ SL GPVG+VYS+V
Sbjct: 178 WDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLV 237

Query: 221 VANEMLFAGAQDG----------------------HTRPVTCLAVGRSRLCSGSMDNTIR 258
           V  ++LFAG QDG                      HT  V  L VG +RL SGSMD TI+
Sbjct: 238 VGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIK 297

Query: 259 VWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN 318
           VW LD L+ + TL DH+   MSL+CWDQFLLSCSLD+T+K+W A   GNLE  YTHKE++
Sbjct: 298 VWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEH 357

Query: 319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPS------FMERGRIFSKHEVRVIEIGPD 372
           GVLAL G++D + KPVL+CACNDNT+ LY+LPS      F ERG+IF+K E+R I+IGP 
Sbjct: 358 GVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSLGLFIRFTERGKIFAKQEIRAIQIGPG 417

Query: 373 KLFFTGDGAGMLGVWKLLAKPS 394
            +FFTGDG G + VWK   +P+
Sbjct: 418 GIFFTGDGTGQVKVWKWCTEPT 439

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNZ2|C3H48_ARATH Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1

 Score =  324 bits (831), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 176/416 (42%), Positives = 238/416 (57%), Gaps = 84/416 (20%)

Query: 35  TNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDR 94
           +N+ VC +   GRCNR PC + H E     L  P     +  S  R+ +        E  
Sbjct: 27  SNQKVCFHWRAGRCNRYPCPYLHRE-----LPGPGSGPVAASSNKRVAD--------ESG 73

Query: 95  IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF 154
                +R  PG++G  N+           G   T  KT  + +C  W+ GNC  GD+CR+
Sbjct: 74  FAGPSHRRGPGFSGTANNWG-------RFGGNRTVTKT--EKLCKFWVDGNCPYGDKCRY 124

Query: 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----------------- 197
           LH W  G+  ++L +L+GH+K V+GIALP  SDKL++ S+D T                 
Sbjct: 125 LHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLNL 184

Query: 198 -----------------------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG- 233
                                  AWNI+++A+ SL+GPVG+VYS+VV  ++LFAG QDG 
Sbjct: 185 GGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVYSLVVGTDLLFAGTQDGS 244

Query: 234 ---------------------HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN 272
                                HT  V  L VG +RL SG+MDN+I+VW LD L+ + TL 
Sbjct: 245 ILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDNSIKVWSLDNLQCIQTLT 304

Query: 273 DHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK 332
           +HT   MSL+CWDQFLLSCSLD+T+K+W AT  GNLE  YTHKE+ GVLAL G++D + K
Sbjct: 305 EHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHKEEYGVLALCGVHDAEAK 364

Query: 333 PVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWK 388
           PVL+C+CNDN++HLY+LPSF ERG+I +K E+R I+IGP  +FFTGDG+G + VWK
Sbjct: 365 PVLLCSCNDNSLHLYDLPSFTERGKILAKQEIRSIQIGPGGIFFTGDGSGQVKVWK 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2

 Score =  314 bits (805), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 186/453 (41%), Positives = 236/453 (52%), Gaps = 92/453 (20%)

Query: 1   MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTES 60
           MD++   RF ++R      P NG A     G       VC++   GRCNR PC + H+E 
Sbjct: 1   MDIETDGRFGNKRVHHRLGPANGAASSSTSGK------VCIHWRAGRCNRFPCPYLHSEL 54

Query: 61  SSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPH---VRNRENPGYTGPKNSSSASS 117
                  P+   K P S +    N+W       R PH      R   G  GP        
Sbjct: 55  -------PEATAKRP-SQSGGGGNVW-------RNPHSGGGGGRGAGGAGGPNKWGRGPG 99

Query: 118 TVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAV 177
                   K   +       C ++L G+C  G++CR+ HS+   + +TML  L+GHEK V
Sbjct: 100 GADGGPRHKVPDRP------CRYFLAGDCSYGEKCRYPHSYSMSDSITMLTPLQGHEKVV 153

Query: 178 SGIALPLRSDKLFSGSRDGTA--------------------------------------- 198
           +GIALP  SDKL+SGS+DGT                                        
Sbjct: 154 TGIALPAGSDKLYSGSKDGTVRMWDCQTGQCAGVINMGREIGCMISEGPWLFVGIPDAVK 213

Query: 199 -WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG----------------------HT 235
            WN+++ AE +L GP G+VY++ V NE+LFA  QDG                      H 
Sbjct: 214 VWNMQTQAEMNLTGPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASLVGHQ 273

Query: 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDH 295
             V  L VG  RL S SMD TIRVW+L TL+ + TL+DHT   MS+LCWDQFLLSCSLD 
Sbjct: 274 LAVVSLVVGAMRLYSASMDKTIRVWDLATLQCIQTLSDHTGVVMSVLCWDQFLLSCSLDQ 333

Query: 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355
           TIKVW AT  G+LE  YTHKE++G LAL G+ D   KPVL+C+ NDNTV LY+LPSF +R
Sbjct: 334 TIKVWAATESGSLEVTYTHKEEHGALALSGMPDAQSKPVLLCSLNDNTVRLYDLPSFSDR 393

Query: 356 GRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWK 388
           GRIFSK E+R I++GP  LFFTGDG G L VW+
Sbjct: 394 GRIFSKQEIRAIQVGPSGLFFTGDGTGELKVWQ 426

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE91|C3H62_ARATH Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1

 Score =  234 bits (597), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 133/324 (41%), Positives = 177/324 (54%), Gaps = 67/324 (20%)

Query: 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR 194
           K VC +W  G C RG++C+FLHSW C  GL M+A LEGH K + GIALP  SDKLFS S 
Sbjct: 92  KWVCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSI 151

Query: 195 DGT----------------------------------------AWNIESSAEFSLD--GP 212
           DGT                                        A+N+++S +  L   G 
Sbjct: 152 DGTLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGV 211

Query: 213 VGEVYSMVVANEMLFAGAQ------------------------DGHTRPVTCLAVGRSRL 248
           VG+V +M +AN MLFAG                          +GH+  VTC AVG   L
Sbjct: 212 VGQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQML 271

Query: 249 CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNL 308
            SGS+D TI++W+L+TL+ +MTL  HT    SLLCWD+ L+S SLD TIKVW  +  G L
Sbjct: 272 YSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTIKVWAYSENGIL 331

Query: 309 EAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI 367
           +   T + E + V AL G++D + KP++ C+  + TV +++LPSF ERGR+FS H +  +
Sbjct: 332 KVVQTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFDLPSFQERGRMFSTHTIATL 391

Query: 368 EIGPDKLFFTGDGAGMLGVWKLLA 391
            IGP  L F+GD +G L VW L A
Sbjct: 392 TIGPQGLLFSGDESGNLRVWTLAA 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKR9|C3H59_ARATH Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1

 Score =  228 bits (580), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 186/353 (52%), Gaps = 70/353 (19%)

Query: 101 RENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC 160
           R+N  Y GP+     SS++SD  G       +  K+VC  W  GNC +G++C+FLHSW C
Sbjct: 120 RKNAVY-GPR-----SSSLSDTRGCGPRLNGSPKKSVCNFWKDGNCKKGEKCQFLHSWSC 173

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----------------------- 197
             GL M+A LEGH+  + GIALP  SDKLFS S DGT                       
Sbjct: 174 FPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQAEAGS 233

Query: 198 -----------------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG------- 233
                            A+N+++S +  L+G VG+V++M  AN MLFAG   G       
Sbjct: 234 LISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVGQVHAMTAANGMLFAGTSSGSILVWKA 293

Query: 234 -----------------HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
                            H+  VTC  VG   L SGS+D TI+VW+L+TL+  MTL  H  
Sbjct: 294 TDSESDPFKYLTSLEGHHSGEVTCFVVGGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIG 353

Query: 277 APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336
              SLLCWD+ L+S SLD TIK+W  +   +L+   T K++  V  L G++D + KP++ 
Sbjct: 354 TVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQTRKQELSVHTLCGMHDAEAKPIMF 413

Query: 337 CACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKL 389
           C+  +  V +++LPSF ERG++FS   +  + IGP  L F+GD +G L VW L
Sbjct: 414 CSYQNGAVGIFDLPSFEERGKMFSTQTICTLTIGPGGLLFSGDKSGNLRVWSL 466

Arabidopsis thaliana (taxid: 3702)

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 88/203 (43%), Gaps = 31/203 (15%)

Query: 208 SLDGPVGEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGRSRLC 249
           +L G  G V S+   ++ LF+G+ D                  GH +PV  + +    L 
Sbjct: 497 TLKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDKYLF 556

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATGRGNL 308
           SGS D TI+VW+L TLE   TL  H  A  +L    Q+L S S D TIKVW   T R N 
Sbjct: 557 SGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDLKTFRCNY 616

Query: 309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIE 368
                H +    + + G N       L     D T+ ++ L S +E       H+ R +E
Sbjct: 617 TLK-GHTKWVTTICILGTN-------LYSGSYDKTIRVWNLKS-LECSATLRGHD-RWVE 666

Query: 369 --IGPDKLFFTGDGAGMLGVWKL 389
             +  DKL FT      + +W L
Sbjct: 667 HMVICDKLLFTASDDNTIKIWDL 689

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 88/207 (42%), Gaps = 31/207 (14%)

Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS-LDGPVGEVYSMV 220
              +A LEGH   V+   L     KL SGS D T   WN  +S   S L G    V  + 
Sbjct: 303 FQQVALLEGHSSGVT--CLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLT 360

Query: 221 VANEMLFAGAQD-----------------GHTRPVTCLAVGRSR--LCSGSMDNTIRVWE 261
             + +L +G+ D                 GHT PV  + + R R  + SGS D+TI++W 
Sbjct: 361 FDSTLLVSGSADCTVKLWHFSGGKRITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWS 420

Query: 262 LDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
           L+T   + T + H     SL   D  L SCSLD TIK W    +  +   + H E    +
Sbjct: 421 LETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTLFGHIEGVWEI 480

Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYE 348
           A   L        LI   +D  V ++E
Sbjct: 481 AADHLR-------LISGAHDGVVKVWE 500

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BU94|PRP46_DEBHA Pre-mRNA-splicing factor PRP46 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PRP46 PE=3 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 35/216 (16%)

Query: 168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS------LDGPVGEVYSM 219
           A + GH   V  +A+  R   LFSGS D T   W++E +   S        G VG +Y+M
Sbjct: 158 ATITGHIMGVRSLAVSSRYPYLFSGSEDKTVKCWDLERTNSSSGCQIRNYHGHVGGIYAM 217

Query: 220 VVANEM--LFAGAQD------------------GHTRPVTCLA--VGRSRLCSGSMDNTI 257
            +  E+  LF G +D                  GH   +T +A  +G  ++ + SMD TI
Sbjct: 218 ALHPELDLLFTGGRDSVIRVWDLRSRTEIMVLSGHRSDITSIASQIGDPQIITSSMDATI 277

Query: 258 RVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHT--IKVWFATGRGNLEAAYTHK 315
           R+W++      + L  H+ +  S+    Q +  CS D +  +K W   G G L   + H 
Sbjct: 278 RLWDIRKATTQLALTHHSKSIRSMAMHPQEMTMCSGDTSGNLKEWLLPG-GELLNEFGHS 336

Query: 316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
            +N ++    +N  +    L    +D  +  Y+  S
Sbjct: 337 GENKIINTLSINPSNN--TLFSGYDDGRMEFYDYVS 370

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 30/227 (13%)

Query: 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204
           + G   R L  W    G   +  L GH   V    + L   ++ SGSRD T   W+IE+ 
Sbjct: 435 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETG 491

Query: 205 AEFS-LDGPVGEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGR 245
                L G V  V  +      + +GA D                  GHT  V  L    
Sbjct: 492 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 551

Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATG 304
             + SGS+D +IRVW+++T   + TL  H      +   D  L+S + D T+K+W   TG
Sbjct: 552 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 611

Query: 305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           +        +K  + V  L        K  +I + +D TV L++L +
Sbjct: 612 QCLQTLQGPNKHQSAVTCL-----QFNKNFVITSSDDGTVKLWDLKT 653

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Homo sapiens (taxid: 9606)

>sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 34/229 (14%)

Query: 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204
           + G   R L  W    G   +  L GH   V    + L   ++ SGSRD T   W+IE+ 
Sbjct: 357 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETG 413

Query: 205 AEFS-LDGPVGEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGR 245
                L G V  V  +      + +GA D                  GHT  V  L    
Sbjct: 414 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 473

Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATG 304
             + SGS+D +IRVW+++T   + TL  H      +   D  L+S + D T+K+W   TG
Sbjct: 474 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 533

Query: 305 R--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           +    L+    H+     L          K  +I + +D TV L++L +
Sbjct: 534 QCLQTLQGPSKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKT 575

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
225463643	469	PREDICTED: zinc finger CCCH domain-conta	0.961	0.808	0.430	6e-95
225463655	469	PREDICTED: zinc finger CCCH domain-conta	0.961	0.808	0.421	3e-93
225431016	468	PREDICTED: zinc finger CCCH domain-conta	0.961	0.809	0.421	2e-92
225429007	469	PREDICTED: zinc finger CCCH domain-conta	0.951	0.799	0.420	8e-92
359484146	473	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.951	0.792	0.420	3e-91
297735297	446	unnamed protein product [Vitis vinifera]	0.906	0.800	0.436	9e-91
356559882	427	PREDICTED: zinc finger CCCH domain-conta	0.860	0.793	0.421	2e-90
297796001	440	hypothetical protein ARALYDRAFT_495266 [	0.865	0.775	0.447	8e-90
356530911	426	PREDICTED: zinc finger CCCH domain-conta	0.860	0.795	0.420	1e-89
356500854	421	PREDICTED: zinc finger CCCH domain-conta	0.862	0.807	0.426	5e-89

>gi|225463643|ref|XP_002272321.1| PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis vinifera]

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 265/479 (55%), Gaps = 100/479 (20%)

Query: 1   MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTE- 59
           MD+K S+   D+ ER               G    N +VC Y L GRCNRNPCRF H E 
Sbjct: 1   MDIKPSRLVGDKNER---------------GRRRVNNMVCSYWLRGRCNRNPCRFLHQEL 45

Query: 60  --SSSLLLSNP---KLAKKSPPSYNRLKNNLWV---SSGS-------EDRIPHVRNRENP 104
             ++   +SN       +++P S ++  ++L     SSGS            H  NRE  
Sbjct: 46  PQNTHYQISNQFHKNCWQRNPDSDSKRASSLTSLDRSSGSTTPKRSSASNQSHRNNREGT 105

Query: 105 GYTGPKNS-------SSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHS 157
            Y+  K          S+S T +  S     ++K   + VC +WL GNCV  D+C++LHS
Sbjct: 106 LYSDQKGEWDSTNLRCSSSPTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADKCQYLHS 165

Query: 158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG--------------------- 196
           WF G G+  LA+L GH KA+SGI LP  S+KL++ SRDG                     
Sbjct: 166 WFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASRDGYIRVWDCHTGQCDGVVNLGGE 225

Query: 197 -------------------TAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ------ 231
                               AWNIES  + SLDGPVG++Y+MVV N+MLFAGAQ      
Sbjct: 226 IGSLISAGPWLFAGIKDVVKAWNIESCTDLSLDGPVGQIYAMVVNNDMLFAGAQNGTIYA 285

Query: 232 ----------------DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                           +GH   V  L VG  RL SGSMDNTIRVW+LDTL+ + TL +H 
Sbjct: 286 WKANKGNNAFEPATTLEGHNGAVVSLTVGDGRLYSGSMDNTIRVWDLDTLQCIHTLKEHA 345

Query: 276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335
              MSL+CW  +L+SCSLD TIKVWFAT  GNLE  YT  E++GVL+L G+N+ +GKP+L
Sbjct: 346 SVVMSLVCWGPYLISCSLDQTIKVWFATEAGNLEVTYTRNEEHGVLSLFGMNNSEGKPIL 405

Query: 336 ICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS 394
           +C+CNDN+V LYELPSF E+GRIF+K EVR I+IGP  L FTGDG G + VWK  A+P+
Sbjct: 406 LCSCNDNSVRLYELPSFTEKGRIFAKEEVREIQIGPGGLVFTGDGTGQVDVWKWQAEPT 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463655|ref|XP_002272770.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Vitis vinifera]

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 202/479 (42%), Positives = 255/479 (53%), Gaps = 100/479 (20%)

Query: 1   MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTE- 59
           MD+K S+   D+ ER               G    N +VC Y L GRCNRNPCRF H E 
Sbjct: 1   MDIKPSRLVGDKNER---------------GRRHVNNMVCSYWLRGRCNRNPCRFLHQEL 45

Query: 60  ------------SSSLLLSNPKLAKKSPPSY---NRLKNNLWVSSGSEDRIPHVRNRENP 104
                         +    NP    KS  S    +R   +      S     H  +RE  
Sbjct: 46  PQNTHYQISNQFRKNCWQRNPDSDSKSASSLTSLDRPSGSTTPKRSSASNQSHRNHREGT 105

Query: 105 GYTGPKNS-------SSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHS 157
            Y+  K          S+S T +  S     ++    + VC +WL GNCV  D+CR+LHS
Sbjct: 106 LYSDQKGEWDSTNLRCSSSPTRAGSSSGNGITQNVIGERVCKYWLHGNCVEADKCRYLHS 165

Query: 158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG--------------------- 196
           WF G G+  LA+L GH KA+SGI LP  S+KL++ SRDG                     
Sbjct: 166 WFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASRDGYIRVWDCHTGQCDGVVNLGGE 225

Query: 197 -------------------TAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ------ 231
                               AWNIES A+ SLDGPVG++Y+MVV N+MLFAGAQ      
Sbjct: 226 IGSLISAGPWVFAGIKDVVKAWNIESCADVSLDGPVGQIYAMVVNNDMLFAGAQNGTIHA 285

Query: 232 ----------------DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                           +GH   V  L VG  RL SGSMDNTIRVW+LDTL+ +  L +H 
Sbjct: 286 WKANKETNAFKPATTLEGHNGAVVSLTVGGGRLYSGSMDNTIRVWDLDTLQCIHALKEHA 345

Query: 276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335
              MSL+CW  +L+SCSLD TIKVWFAT  GNLE  +TH E++GVL+L G+N+ +GKP+L
Sbjct: 346 SVVMSLVCWGPYLISCSLDQTIKVWFATEAGNLEVTHTHNEEHGVLSLFGMNNSEGKPIL 405

Query: 336 ICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS 394
           +C+CNDN+V LYELPSF E+G IF+K EVR I+IGP  L FTGDG G + VWK  A+P+
Sbjct: 406 LCSCNDNSVRLYELPSFTEKGSIFAKEEVREIQIGPGGLVFTGDGTGQVDVWKWQAEPT 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431016|ref|XP_002273063.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Vitis vinifera]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/479 (42%), Positives = 263/479 (54%), Gaps = 100/479 (20%)

Query: 1   MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTE- 59
           MD+K S+   D+ ER               G    N +VC Y L GRCNRNPCRF H E 
Sbjct: 1   MDIKPSRLVGDKNER---------------GRRHVNNMVCSYWLRGRCNRNPCRFLHQEL 45

Query: 60  --SSSLLLSNP---KLAKKSPPSYNRLKNNL---WVSSGS-------EDRIPHVRNRENP 104
             ++   +SN       +++P S ++  ++L   + SSGS            H  NRE  
Sbjct: 46  PQNTHYQISNQFRKNCWQRNPDSDSKSASSLTSLYRSSGSTPPKCSSASNQSHRNNRERT 105

Query: 105 GYTGPKNS-------SSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHS 157
            Y+  K          S+S T +  S     ++K   + VC +WL GNCV  D C++LHS
Sbjct: 106 LYSDQKGEWDSTNLRCSSSPTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADRCQYLHS 165

Query: 158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG--------------------- 196
           WF G G+  LA+L GH KA+SGI LP  S+KL++ S DG                     
Sbjct: 166 WFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASGDGYIRVWDCHTGHCDGAVNLGGE 225

Query: 197 -------------------TAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG---- 233
                               AWNIE  A+ SLDGPVG++Y+MVV ++MLFAGA++G    
Sbjct: 226 IGSLISAGPWVFAGIKNVVKAWNIEYCADLSLDGPVGQIYAMVVDHDMLFAGAENGTIYA 285

Query: 234 ------------------HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                             H   V  L VG  +L SGSMDNTIRVW+L+TL+ + TL +H 
Sbjct: 286 WKPNKETNAFELATTLGGHNCAVVSLTVGGGKLYSGSMDNTIRVWDLNTLQCIHTLKEHA 345

Query: 276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335
              MSL CW  +L+SCSLD TIKVWFAT  GNLE  YTH E++GVLAL G+ + +GKP+L
Sbjct: 346 SVVMSLGCWGPYLISCSLDQTIKVWFATEAGNLEVTYTHNEEHGVLALFGMFNSEGKPIL 405

Query: 336 ICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS 394
           +C+CNDN+V LYELPSF ER RIF+K EVR I+IGP  LFFTGDG G + +WK  A+P+
Sbjct: 406 LCSCNDNSVRLYELPSFTERARIFAKEEVRAIQIGPGGLFFTGDGTGQVDIWKWQAEPT 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429007|ref|XP_002264800.1| PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis vinifera] gi|296083041|emb|CBI22445.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 203/483 (42%), Positives = 255/483 (52%), Gaps = 108/483 (22%)

Query: 1   MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTE- 59
           MD+K S+   D+ ER   +                N +VC Y L GRCNRNPCRF H E 
Sbjct: 1   MDIKPSRLIGDKNERERRH---------------VNNMVCSYWLRGRCNRNPCRFLHQEL 45

Query: 60  ------------SSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGS-------EDRIPHVRN 100
                         +    NP    KS  S   L      SSGS            H  N
Sbjct: 46  PQNTHYQISNQFGKNCWQRNPDSDSKSASSLTSLDR----SSGSTTPKCSSASNQSHRNN 101

Query: 101 RENPGYTGPKNSSSASS-------TVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR 153
           RE   Y+  K    +++       T +  S     ++K   + VC +WL GNCV  D+C+
Sbjct: 102 RERSLYSDQKGEWDSTNLRCSSSSTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADKCQ 161

Query: 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG----------------- 196
           +LHSWF G G+  LA+L GH  A+SGI LP  S KL++ SRDG                 
Sbjct: 162 YLHSWFKGHGVFKLAELNGHIMAISGIVLPSGSKKLYTASRDGYIRVWDCHTGQCDGVVN 221

Query: 197 -----------------------TAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ-- 231
                                   AWNIES A  SLDGPVG++Y+MVV N++LFAGAQ  
Sbjct: 222 LGGEIGSLISAGPWVFAGIKDVVKAWNIESCANLSLDGPVGQIYAMVVNNDILFAGAQNG 281

Query: 232 --------------------DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL 271
                               +GH   V  L VG  RL SGSMDNTIRVW+LDTL+ + TL
Sbjct: 282 TIHAWKANKETNAFEPATTLEGHNGAVVSLTVGGGRLYSGSMDNTIRVWDLDTLQCIHTL 341

Query: 272 NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331
            +H    MSL+CW  +L+SCSLD TIKVWFA   GNLE  YTH E++GVL+L G+N+ +G
Sbjct: 342 KEHASVVMSLVCWGPYLISCSLDQTIKVWFAIEAGNLEVTYTHNEEHGVLSLFGMNNLEG 401

Query: 332 KPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391
           KP+L+C+CNDN+V LYELPSF E+GRIF+K EVR I+IGP  L FTGDG G + VWK  A
Sbjct: 402 KPILLCSCNDNSVRLYELPSFTEKGRIFAKEEVREIQIGPGGLVFTGDGTGQVDVWKWQA 461

Query: 392 KPS 394
           +P+
Sbjct: 462 EPT 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484146|ref|XP_003633069.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 48-like [Vitis vinifera]

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 205/488 (42%), Positives = 255/488 (52%), Gaps = 113/488 (23%)

Query: 1   MDVKASKRFTDQRERSFFNPINGQAGGGVGGGWPTNKVVCVYVLEGRCNRNPCRFAHTE- 59
           MD+K S+   D+ ER               G    N +VC Y L GRCNRNPCRF H E 
Sbjct: 1   MDIKPSRSVGDKNER---------------GRRHVNNMVCSYWLRGRCNRNPCRFLHQEL 45

Query: 60  ------------SSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGS-------EDRIPHVRN 100
                         +    NP    KS  S   L      SSGS            H  N
Sbjct: 46  PQNTHYQVSNQFRKNCWQRNPDSDSKSASSLTSLDR----SSGSTTPKCTSASNQSHRNN 101

Query: 101 RENPGYTGPKNS-------SSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR 153
           RE   Y+  K          S+S T +  S     ++K   + VC + L GNCV  D+C+
Sbjct: 102 RERTLYSDQKGEWDSTNLRCSSSQTRAGSSSGNGITQKVIGERVCKYXLHGNCVEADKCQ 161

Query: 154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG----------------- 196
           +LHSWF G G+  LAKL GH KA+SGI LP  S+KL++ SRDG                 
Sbjct: 162 YLHSWFKGHGVFKLAKLNGHIKAISGIVLPSGSEKLYTASRDGYIRVWDCHTGQCDGVVN 221

Query: 197 -----------------------TAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG 233
                                   AWNIES A+ SLDGPVG++Y+MVV ++MLFAGA++G
Sbjct: 222 LGGEIGSLISAGPWVFAGIKDVVKAWNIESCADLSLDGPVGQIYAMVVDHDMLFAGAENG 281

Query: 234 ----------------------HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL 271
                                 H   V  L VG  RL SGS+DNTIRVW+L+TL+ + TL
Sbjct: 282 TIYAWKPSKETNAFELATTLGGHNCAVFSLTVGGGRLYSGSLDNTIRVWDLNTLQCIHTL 341

Query: 272 NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-----NGVLALGGL 326
            +H    MSL+CW  +L+SCSLD  IKVWFAT  GNLE  YTH E+     NGVLAL G+
Sbjct: 342 KEHASVVMSLVCWGPYLISCSLDQKIKVWFATEAGNLEVTYTHNEEPLYQGNGVLALFGM 401

Query: 327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGV 386
            D +GKP+L+C+CNDN+V LYELPSF ER RIF+K +VR I+IGP  LFF GDG G + V
Sbjct: 402 FDSEGKPILLCSCNDNSVRLYELPSFTERARIFAKEQVRAIQIGPGGLFFIGDGTGQVDV 461

Query: 387 WKLLAKPS 394
           WK  A+P+
Sbjct: 462 WKWQAEPT 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735297|emb|CBI17659.3| unnamed protein product [Vitis vinifera]

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 193/442 (43%), Positives = 251/442 (56%), Gaps = 85/442 (19%)

Query: 38  VVCVYVLEGRCNRNPCRFAHTE---SSSLLLSNP---KLAKKSPPSYNRLKNNL---WVS 88
           +VC Y L GRCNRNPCRF H E   ++   +SN       +++P S ++  ++L   + S
Sbjct: 1   MVCSYWLRGRCNRNPCRFLHQELPQNTHYQISNQFRKNCWQRNPDSDSKSASSLTSLYRS 60

Query: 89  SGS-------EDRIPHVRNRENPGYTGPKNS-------SSASSTVSDESGDKSTSKKTTL 134
           SGS            H  NRE   Y+  K          S+S T +  S     ++K   
Sbjct: 61  SGSTPPKCSSASNQSHRNNRERTLYSDQKGEWDSTNLRCSSSPTRAGSSSGNGITQKVIG 120

Query: 135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR 194
           + VC +WL GNCV  D C++LHSWF G G+  LA+L GH KA+SGI LP  S+KL++ S 
Sbjct: 121 ERVCKYWLHGNCVEADRCQYLHSWFKGHGVFKLAELNGHIKAISGIVLPSGSEKLYTASG 180

Query: 195 DG----------------------------------------TAWNIESSAEFSLDGPVG 214
           DG                                         AWNIE  A+ SLDGPVG
Sbjct: 181 DGYIRVWDCHTGHCDGAVNLGGEIGSLISAGPWVFAGIKNVVKAWNIEYCADLSLDGPVG 240

Query: 215 EVYSMVVANEMLFAGAQDG----------------------HTRPVTCLAVGRSRLCSGS 252
           ++Y+MVV ++MLFAGA++G                      H   V  L VG  +L SGS
Sbjct: 241 QIYAMVVDHDMLFAGAENGTIYAWKPNKETNAFELATTLGGHNCAVVSLTVGGGKLYSGS 300

Query: 253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAY 312
           MDNTIRVW+L+TL+ + TL +H    MSL CW  +L+SCSLD TIKVWFAT  GNLE  Y
Sbjct: 301 MDNTIRVWDLNTLQCIHTLKEHASVVMSLGCWGPYLISCSLDQTIKVWFATEAGNLEVTY 360

Query: 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD 372
           TH E++GVLAL G+ + +GKP+L+C+CNDN+V LYELPSF ER RIF+K EVR I+IGP 
Sbjct: 361 THNEEHGVLALFGMFNSEGKPILLCSCNDNSVRLYELPSFTERARIFAKEEVRAIQIGPG 420

Query: 373 KLFFTGDGAGMLGVWKLLAKPS 394
            LFFTGDG G + +WK  A+P+
Sbjct: 421 GLFFTGDGTGQVDIWKWQAEPT 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559882|ref|XP_003548225.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/434 (42%), Positives = 244/434 (56%), Gaps = 95/434 (21%)

Query: 31  GGWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSG 90
           GG   ++ VC +   G+CNR PC F H+E                     L  N   ++G
Sbjct: 15  GGDAKHQKVCFHWQAGKCNRYPCPFLHSE---------------------LPANSHHANG 53

Query: 91  SEDRIPHVRNRENPGYTGPKNSSSASST--------VSDESGDKSTSKKTTLKNVCCHWL 142
           +  +    R  +N G++GP+ S S ++T                        + VC +W+
Sbjct: 54  ASSK----RAYDNSGFSGPRRSPSFNNTWGRGGSRGGGGAGAGAGRGVVVKAEKVCNYWI 109

Query: 143 LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA---- 198
            GNC  G+ C+FLH+W  G+G ++L +LEGH+KAVS IA P  SDKL++GS D TA    
Sbjct: 110 QGNCSYGERCKFLHTWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWD 169

Query: 199 ------------------------------------WNIESSAEFSLDGPVGEVYSMVVA 222
                                               WN ++ +E SL+GPVG+VY++VV 
Sbjct: 170 CQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALVVN 229

Query: 223 NEMLFAGAQDG----------------------HTRPVTCLAVGRSRLCSGSMDNTIRVW 260
           N+MLFAG QDG                      H+R V  L VG +RL SGSMDNTIRVW
Sbjct: 230 NDMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVW 289

Query: 261 ELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV 320
            L+TL+ + TL +HT   MS+LCWDQFLLSCSLD T+KVW+AT  GNLE  YTH E+NG+
Sbjct: 290 NLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEENGI 349

Query: 321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDG 380
           L L G++D  GKP+L+CACNDNTVHLY+LPSF ERG+I +K EVR I+IGP+ +FFTGDG
Sbjct: 350 LTLCGMHDSQGKPILLCACNDNTVHLYDLPSFAERGKILTKKEVRAIQIGPNGIFFTGDG 409

Query: 381 AGMLGVWKLLAKPS 394
            G + VW  +A+ +
Sbjct: 410 TGEVRVWNWIAEAT 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796001|ref|XP_002865885.1| hypothetical protein ARALYDRAFT_495266 [Arabidopsis lyrata subsp. lyrata] gi|297311720|gb|EFH42144.1| hypothetical protein ARALYDRAFT_495266 [Arabidopsis lyrata subsp. lyrata]

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 189/422 (44%), Positives = 240/422 (56%), Gaps = 81/422 (19%)

Query: 35  TNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDR 94
           T + VC +   GRCNR+PC + H E     L  P   +   P Y   +         E  
Sbjct: 34  TRQKVCFHWRAGRCNRSPCPYLHRE-----LPGPGPGQGQGPGYTNKR------VAEESG 82

Query: 95  IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF 154
                +R  PG+ G  NSS          G   T  KT  + VC  W+ GNC  GD+CR+
Sbjct: 83  FAGPSHRRGPGFNGNSNSSWG------RFGGNRTVTKT--EKVCNFWVDGNCTYGDKCRY 134

Query: 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----------------- 197
           LH W  GE  ++L +L+GHEK VSGIALP  SDKL++GS+D T                 
Sbjct: 135 LHCWSKGESFSLLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKL 194

Query: 198 -----------------------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG- 233
                                  AWNIE++AE SL+GPVG+VYS+VV  ++LFAG QDG 
Sbjct: 195 GGEVGCVLSEGPWLLVGMPNLVKAWNIETNAEQSLNGPVGQVYSLVVGTDLLFAGTQDGS 254

Query: 234 ---------------------HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN 272
                                HT  V  L VG +RL SGSMD TI+VW LD L+ + TL 
Sbjct: 255 ILAWRYNAATNCFEPAASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLT 314

Query: 273 DHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK 332
           DHT   MSL+CWDQFLLSCSLD+T+K+W A   GNLEA YTHKE++GVLAL G++D + K
Sbjct: 315 DHTSVVMSLICWDQFLLSCSLDNTVKIWAAVEGGNLEATYTHKEEHGVLALCGVHDAEAK 374

Query: 333 PVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392
           PVL+C+CNDNT+ LY+LPSF ERG+IF+K E+R I+IGP  +FFTGDG G + VWK   +
Sbjct: 375 PVLLCSCNDNTLRLYDLPSFTERGKIFAKQEIRAIQIGPGGIFFTGDGTGQVKVWKWCTE 434

Query: 393 PS 394
           P+
Sbjct: 435 PT 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530911|ref|XP_003534022.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/433 (42%), Positives = 246/433 (56%), Gaps = 94/433 (21%)

Query: 31  GGWPTNKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSG 90
           GG   ++ VC +   G+CNR PC F H+ES               P+ +   N      G
Sbjct: 15  GGDAKHQKVCYHWQAGKCNRYPCPFLHSES---------------PANSHHAN------G 53

Query: 91  SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKK-------TTLKNVCCHWLL 143
           +  +    R  +N G++GP+ S + ++T     G                 + VC +W+ 
Sbjct: 54  TSSK----RTYDNSGFSGPRRSPNFNNTWGRGGGRGGGGGGGAGRGVVVKAEKVCNYWIQ 109

Query: 144 GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA----- 198
           G+C  G+ C+FLHSW  G+G ++L +LEGH+KAVS IA P  SDKL++GS D TA     
Sbjct: 110 GSCSYGERCKFLHSWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDC 169

Query: 199 -----------------------------------WNIESSAEFSLDGPVGEVYSMVVAN 223
                                              WN ++ +E SL+GPVG+VY++VV N
Sbjct: 170 QCGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALVVNN 229

Query: 224 EMLFAGAQDG----------------------HTRPVTCLAVGRSRLCSGSMDNTIRVWE 261
           +MLFAG QDG                      H+R V  L VG +RL SGSMDNTI+VW 
Sbjct: 230 DMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIKVWN 289

Query: 262 LDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
           L+TL+ + TL +HT   MS+LCWDQFLLSCSLD T+KVW+AT  GNLE  Y+H E+NG+L
Sbjct: 290 LETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYSHNEENGIL 349

Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGA 381
            L G++D  GKP+L+CACNDNTVHLY+LPSF ERG+I +K EVR I+IGP+ +FFTGDG 
Sbjct: 350 TLCGMHDSQGKPILLCACNDNTVHLYDLPSFAERGKILTKQEVRAIQIGPNGIFFTGDGT 409

Query: 382 GMLGVWKLLAKPS 394
           G + VW  +A+ +
Sbjct: 410 GEVRVWNWIAEAT 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500854|ref|XP_003519245.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 179/420 (42%), Positives = 236/420 (56%), Gaps = 80/420 (19%)

Query: 37  KVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIP 96
           +  C Y   GRCNRNPCRF H E+             SPP+     N  +    S  + P
Sbjct: 14  RTTCSYWRAGRCNRNPCRFLHIET------------PSPPAACGYGNTAY----SYGKKP 57

Query: 97  HVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLH 156
           H  +   P Y   K     +    D +      KK++ + +C +W+  NCV G++C +LH
Sbjct: 58  HSSSENTPKYGSKKALLRDNGDRGDATRVAKAFKKSSPR-ICKYWINNNCVHGEQCLYLH 116

Query: 157 SWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT------------------- 197
           SWFCG+G + + KL+ H+K ++GIALP+ SDKL+SGS DGT                   
Sbjct: 117 SWFCGDGFSTVTKLQEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGA 176

Query: 198 ---------------------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG--- 233
                                AWNI++ +EF+LDGP G V +M V N  LFAGA+DG   
Sbjct: 177 EVTSLISEGSWIFVGLQNAVKAWNIQTMSEFTLDGPKGRVRAMTVGNNTLFAGAEDGVIF 236

Query: 234 --------------------HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND 273
                               HT+ V CLAVG   L SGSMD +I+VW++DTL+  MTLND
Sbjct: 237 AWRGSSKADSPFELVASLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLND 296

Query: 274 HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333
           HTD   SL+CWDQ+LLS S D TIKVW     G+LE  YTH E+NGV++L G+ D +GKP
Sbjct: 297 HTDVVTSLICWDQYLLSSSSDRTIKVWACIEAGSLEVIYTHTEENGVVSLFGMPDAEGKP 356

Query: 334 VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP 393
           +L  +C DN+VH+YELPSF ERGR+F+K +V +IE+GP  LFFTGD +G+L VWK L  P
Sbjct: 357 ILFSSCRDNSVHMYELPSFSERGRLFAKKDVALIELGPGGLFFTGDESGLLMVWKWLEVP 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2173103	443	AT5G51980 [Arabidopsis thalian	0.411	0.365	0.595	1e-80
TAIR|locus:2155904	419	AT5G49200 [Arabidopsis thalian	0.406	0.381	0.484	2.3e-60
TAIR|locus:2131799	430	ZFWD1 "zinc finger WD40 repeat	0.484	0.444	0.523	2e-59
TAIR|locus:2164456	472	AT5G40880 [Arabidopsis thalian	0.395	0.330	0.442	9.9e-54
DICTYBASE|DDB_G0289115	732	mhkB "myosin heavy chain kinas	0.375	0.202	0.335	5.4e-13
TAIR|locus:2127408	479	EMB2271 "AT4G21130" [Arabidops	0.520	0.427	0.266	4.4e-10
CGD|CAL0004039	735	orf19.3301 [Candida albicans (	0.373	0.2	0.316	4.2e-09
UNIPROTKB|F1NIY8	364	F1NIY8 "Uncharacterized protei	0.522	0.565	0.238	5.6e-09
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.380	0.427	0.262	1.2e-08
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.383	0.321	0.274	1.6e-08

TAIR|locus:2173103 AT5G51980 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
 Identities = 100/168 (59%), Positives = 125/168 (74%)

Query:   233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
             GHT  V  L VG +RL SGSMD TI+VW LD L+ + TL DH+   MSL+CWDQFLLSCS
Sbjct:   272 GHTLAVVTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCS 331

Query:   293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS- 351
             LD+T+K+W A   GNLE  YTHKE++GVLAL G++D + KPVL+CACNDNT+ LY+LPS 
Sbjct:   332 LDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSL 391

Query:   352 -----FMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKPS 394
                  F ERG+IF+K E+R I+IGP  +FFTGDG G + VWK   +P+
Sbjct:   392 GLFIRFTERGKIFAKQEIRAIQIGPGGIFFTGDGTGQVKVWKWCTEPT 439

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2155904 AT5G49200 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 78/161 (48%), Positives = 108/161 (67%)

Query:   232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC 291
             +GH+  VTC AVG   L SGS+D TI++W+L+TL+ +MTL  HT    SLLCWD+ L+S 
Sbjct:   255 EGHSGEVTCFAVGGQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISS 314

Query:   292 SLDHTIKVWFATGRGNLEAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350
             SLD TIKVW  +  G L+   T + E + V AL G++D + KP++ C+  + TV +++LP
Sbjct:   315 SLDGTIKVWAYSENGILKVVQTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFDLP 374

Query:   351 SFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA 391
             SF ERGR+FS H +  + IGP  L F+GD +G L VW L A
Sbjct:   375 SFQERGRMFSTHTIATLTIGPQGLLFSGDESGNLRVWTLAA 415

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2131799 ZFWD1 "zinc finger WD40 repeat protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 110/210 (52%), Positives = 146/210 (69%)

Query:   181 ALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV 238
             +L + +D LF+G++DG+   W   S+   S   P         A  +L      GHT  V
Sbjct:   228 SLVVGTDLLFAGTQDGSILVWRYNSTT--SCFDP---------AASLL------GHTLAV 270

Query:   239 TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIK 298
               L VG +RL SG+MDN+I+VW LD L+ + TL +HT   MSL+CWDQFLLSCSLD+T+K
Sbjct:   271 VSLYVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVK 330

Query:   299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI 358
             +W AT  GNLE  YTHKE+ GVLAL G++D + KPVL+C+CNDN++HLY+LPSF ERG+I
Sbjct:   331 IWAATEGGNLEVTYTHKEEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSFTERGKI 390

Query:   359 FSKHEVRVIEIGPDKLFFTGDGAGMLGVWK 388
              +K E+R I+IGP  +FFTGDG+G + VWK
Sbjct:   391 LAKQEIRSIQIGPGGIFFTGDGSGQVKVWK 420

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2164456 AT5G40880 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 69/156 (44%), Positives = 99/156 (63%)

Query:   234 HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSL 293
             H+  VTC  VG   L SGS+D TI+VW+L+TL+  MTL  H     SLLCWD+ L+S SL
Sbjct:   311 HSGEVTCFVVGGEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSL 370

Query:   294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353
             D TIK+W  +   +L+   T K++  V  L G++D + KP++ C+  +  V +++LPSF 
Sbjct:   371 DGTIKLWACSENESLKVVQTRKQELSVHTLCGMHDAEAKPIMFCSYQNGAVGIFDLPSFE 430

Query:   354 ERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKL 389
             ERG++FS   +  + IGP  L F+GD +G L VW L
Sbjct:   431 ERGKMFSTQTICTLTIGPGGLLFSGDKSGNLRVWSL 466

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0289115 mhkB "myosin heavy chain kinase B" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 54/161 (33%), Positives = 74/161 (45%)

Query:   232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC 291
             +GH +PV  + +    L SGS D TI+VW+L TLE   TL  H  A  +L    Q+L S 
Sbjct:   539 EGHDKPVHTVLLNDKYLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYLFSG 598

Query:   292 SLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350
             S D TIKVW   T R N      H +    + + G N       L     D T+ ++ L 
Sbjct:   599 SNDKTIKVWDLKTFRCNYTLK-GHTKWVTTICILGTN-------LYSGSYDKTIRVWNLK 650

Query:   351 SFMERGRIFSKHEVRVIE--IGPDKLFFTGDGAGMLGVWKL 389
             S +E       H+ R +E  +  DKL FT      + +W L
Sbjct:   651 S-LECSATLRGHD-RWVEHMVICDKLLFTASDDNTIKIWDL 689

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0031037 "myosin II filament disassembly" evidence=IMP

GO:0005826 "actomyosin contractile ring" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0045159 "myosin II binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA;IC

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0016905 "myosin heavy chain kinase activity" evidence=IEA;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2127408 EMB2271 "AT4G21130" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 62/233 (26%), Positives = 108/233 (46%)

Query:   173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGA 230
             H+ +V+G+AL     + FS S+DGT   W++ S        P  EV     ++ + F  +
Sbjct:   144 HQHSVTGVALSDDDSRGFSVSKDGTILHWDVSSGKSDEYKWPSDEVLK---SHGLKFQES 200

Query:   231 -QDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQ 286
                 H +    LAV   GR  L +G +D  + +W++ T E V     H    +S LC+ +
Sbjct:   201 WYTRHNKQSLALAVSSDGRY-LATGGVDCHVHLWDIRTREHVQAFTGHCGI-VSSLCFRE 258

Query:   287 F---LLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT 343
                 L S S D T+ +W A  R  +E+ + H+ +  +L++  L    G+  ++    D T
Sbjct:   259 GTAELFSGSYDGTLSIWNAEHRTYIESCFGHQSE--LLSIDAL----GRERVLSVGRDRT 312

Query:   344 VHLYELPSFMERGRIFSKHEVRVIE----IGPDKLFFTGDGAGMLGVWKLLAK 392
             + LY++P   E  R+  +      E    +  D+ F +G   G + +W +L K
Sbjct:   313 MQLYKVP---ESTRLIYRASESNFECCCFVNSDE-FLSGSDNGSIALWSILKK 361

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0006364 "rRNA processing" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

CGD|CAL0004039 orf19.3301 [Candida albicans (taxid:5476)]

 Score = 166 (63.5 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 51/161 (31%), Positives = 81/161 (50%)

Query:   233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
             GH+  VTCL   R  L +GS D TI++W++D+ E V TL  HT    +L+  +Q L+S  
Sbjct:   381 GHSDGVTCLQFNRKYLMTGSYDTTIKIWKIDSGECVKTLTGHTKGVRALVFDNQKLISGG 440

Query:   293 LDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
             LD TIKVW + TG+    A Y   ED  V+++   N       ++    D+TV ++ + S
Sbjct:   441 LDSTIKVWNYHTGQ--CIATYRGHED-AVVSVDFTNKS-----IVSGSADHTVRVWHVDS 492

Query:   352 ---FMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKL 389
                +  RG     + V+ I    + +F   D    + +W +
Sbjct:   493 RTCYTLRGHTDWVNHVK-IHSASNTIFSASDDT-TIRMWDM 531

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

UNIPROTKB|F1NIY8 F1NIY8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 160 (61.4 bits), Expect = 5.6e-09, P = 5.6e-09
 Identities = 55/231 (23%), Positives = 99/231 (42%)

Query:   170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227
             L GH+ +V+ + +      +FS ++DG+   W +ES          G+   +V   +   
Sbjct:    85 LRGHQHSVTCLVVSPDDKFIFSAAKDGSVIKWEVES----------GKKLCVVPGGKKST 134

Query:   228 AGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAP--MSLLC 283
              G   GHT  V C+A+      L +G  +  I +WE  T + + T   H DA   +S   
Sbjct:   135 EGQPMGHTAHVLCIAISSDGKYLATGDRNKLILIWEAATCKRLYTFTGHRDAVSGLSFRK 194

Query:   284 WDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT 343
                 L S S D ++KVW       +E  + H++      + G++    +  +     D T
Sbjct:   195 GTYQLYSASHDRSVKVWNVEENAYVETLFGHQD-----VITGMDSLSRECCVTSGGRDGT 249

Query:   344 VHLYELPSFMERGRIFSKHE--VRVIEIGPDKLFFTGDGAGMLGVWKLLAK 392
             V  +++P   E   IF  H+  +  I++  ++   +G   G + +W L  K
Sbjct:   250 VRFWKIPE--ESQLIFYGHQGSIDCIQLINEEHMVSGADDGSVALWGLAKK 298

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 43/164 (26%), Positives = 76/164 (46%)

Query:   234 HTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC 291
             H+  V+CL++   +  L S S D T++VW +  L+ + ++  H DA  S+   +  + + 
Sbjct:   134 HSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAESLVFTG 193

Query:   292 SLDHTIKVWFATGRGNLEAAYTH----KEDNGVLALGGLNDPDGKPVLICACNDNTVHLY 347
             S D T+KVW    RG   A        K+++ V AL           +    +D  V+ +
Sbjct:   194 SADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTAL-----VTSHMAVYSGSSDGAVNFW 248

Query:   348 EL--PSFMERGRIFSKHEVRVIEIGP-DKLFFTGDGAGMLGVWK 388
             E+     ++   +F KH + V+ I    KL F+G     + VW+
Sbjct:   249 EMGDKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWR 292

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 45/164 (27%), Positives = 81/164 (49%)

Query:   234 HTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC-WDQFLLS 290
             H   ++CLA+   +  L SGS D T +VW +  L  V ++N H DA  +++  +D  + +
Sbjct:   210 HLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESVNAHEDAVNAVVSGFDGLVFT 269

Query:   291 CSLDHTIKVWFATGRG-NLEAAYTH---KEDNGVLALGGLNDPDGKPVLI-CACNDNTVH 345
              S D T+KVW    +  + +  ++    K+D  V A+      D    L+ C  +D TV+
Sbjct:   270 GSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIA----VDQSATLVYCGSSDGTVN 325

Query:   346 LYELPSFMERGRIFSKHEVRVI-EIGPDKLFFTGDGAGMLGVWK 388
              +E  + M+ G +   H++ V+  +    L F+G     + VW+
Sbjct:   326 FWERENNMKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVWR 369

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0DYP5	C3H17_ORYSJ	No assigned EC number	0.4105	0.9162	0.8298	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003102001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (469 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000022001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (461 aa)			•						0.467
	GSVIVG00014488001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa)			•						0.456
	GSVIVG00018072001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa)			•						0.437
	GSVIVG00028473001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (520 aa)			•						0.436
	GSVIVG00027473001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (339 aa)			•						0.431
	GSVIVG00036790001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (310 aa)			•						0.430
	GSVIVG00023743001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa)			•						0.422
	GSVIVG00027417001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (370 aa)			•						0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  103 bits (258), Expect = 5e-25
 Identities = 66/240 (27%), Positives = 98/240 (40%), Gaps = 36/240 (15%)

Query: 162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSM 219
           E   +L  L+GH   V  +A       L SGS D T   W++E+            V ++
Sbjct: 39  ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE---------CVRTL 89

Query: 220 VVANEMLFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277
                        GHT  V+ +A       L S S D TI+VW+++T + + TL  HTD 
Sbjct: 90  T------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137

Query: 278 PMSL--LCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335
             S+       F+ S S D TIK+W     G   A  T      V ++     PDG+ +L
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTG-HTGEVNSV--AFSPDGEKLL 193

Query: 336 ICACNDNTVHLYELPSFMERGRIFSKHEVRVIEI---GPDKLFFTGDGAGMLGVWKLLAK 392
             + +D T+ L++L +    G     HE  V  +       L  +G   G + VW L   
Sbjct: 194 SSS-SDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 91.2 bits (227), Expect = 7e-21
 Identities = 64/234 (27%), Positives = 93/234 (39%), Gaps = 40/234 (17%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227
           L+GH   V+ +A       L +GS DGT   W++E+                        
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK---------------- 48

Query: 228 AGAQDGHTRPVT-CLAVGRS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW- 284
                GHT PV    A      L SGS D TIR+W+L+T E V TL  HT    S + + 
Sbjct: 49  -----GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS-VAFS 102

Query: 285 --DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND 341
              + L S S D TIKVW   TG+           D  V ++     PDG   +  +  D
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGK--CLTTLRGHTD-WVNSV--AFSPDGT-FVASSSQD 156

Query: 342 NTVHLYELPSFMERGRIFSKHEVRV--IEIGPD-KLFFTGDGAGMLGVWKLLAK 392
            T+ L++L +  +     + H   V  +   PD +   +    G + +W L   
Sbjct: 157 GTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 44/220 (20%)

Query: 162 EGLTMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGTA--WNIES-SAEFSLDGPVGEVY 217
           E    +  L GH   VS +A      + L S SRD T   W++E+     +L G    V 
Sbjct: 81  ETGECVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139

Query: 218 SMVVA--NEMLFAGAQD------------------GHTRPVTCLAV--GRSRLCSGSMDN 255
           S+  +     + + +QD                  GHT  V  +A      +L S S D 
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 256 TIRVWELDTLEPVMTLNDHTDAPMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAY 312
           TI++W+L T + + TL  H +   S + +      L S S D TI+VW      +L    
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNS-VAFSPDGYLLASGSEDGTIRVW------DLRTGE 252

Query: 313 THKE----DNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348
             +      N V +L     PDGK  L     D T+ +++
Sbjct: 253 CVQTLSGHTNSVTSLAW--SPDGK-RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.3 bits (173), Expect = 2e-13
 Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 45/259 (17%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSA------EFSLDGPVGEVYSMVV 221
           L GHE +++ IA     + L SGS DGT   W++++        E   D  V ++     
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 222 ANEMLFAGAQD---------------------GHTRPVTCLAV---GRSRLCSGSMDNTI 257
               +   +                       GH+  VT LA    G+      S+D TI
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 258 RVWELDTLEPVMTLNDHTDAPMSLL---CWDQFLLSCSLDHTIKVW-FATGRGNLEAAYT 313
           ++W+L T +P+ TL  HTD   SL         + S S D TI++W  +TG+        
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGP 371
           H  D+ V +      PDG  +L    +D T+ L++L S     R  S H   V  +   P
Sbjct: 241 HS-DSVVSSF----SPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 372 D-KLFFTGDGAGMLGVWKL 389
           D KL  +G   G + +W L
Sbjct: 295 DGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.4 bits (163), Expect = 4e-12
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 59/398 (14%)

Query: 49  NRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTG 108
           N +      ++        P L   S  S    ++ + + +   D +  + +  +    G
Sbjct: 4   NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63

Query: 109 PKN---------------SSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR----- 148
            ++               S S+  T+     D       +L+ +    +    +      
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123

Query: 149 ------GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--W 199
                       +  W       ++  LEGH ++V+ +A  P         S DGT   W
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183

Query: 200 NIESSAEFS-LDGPVGEVYSMV----------------------VANEMLFAGAQDGHT- 235
           ++ +    S L G    V S+                       ++   L      GH+ 
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLC--WDQFLLSCS 292
             V+  +   S L SGS D TIR+W+L +    + TL+ H+ + +S+      + L S S
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352
            D T+++W       L +      +  V +L     PDG  ++    +D T+ L++L + 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS--PDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 353 MERGRIFSKHEVRVIEIGPDKLFF-TGDGAGMLGVWKL 389
                +     V  +   PD     +G   G + +W L
Sbjct: 362 KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 70/338 (20%), Positives = 112/338 (33%), Gaps = 47/338 (13%)

Query: 36  NKVVCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRI 95
           +  V ++ L            H+ES + L  +P    K   S + L   + +      + 
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKP 190

Query: 96  PHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLL------------ 143
                      +    S      ++  S D +               L            
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS 250

Query: 144 ---GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-- 198
                   G     +  W      ++L  L GH  +V  +A       L SGS DGT   
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310

Query: 199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDN 255
           W++E+    S                        GH  PV+ L+    G   +  GS D 
Sbjct: 311 WDLETGKLLSSLT-------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 256 TIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLS-CSLDHTIKVWFATGRGNLEAAYTH 314
           TIR+W+L T +P+ TL  H++        D  ++S  S D T+++W  +    L     H
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352
                 L       PDGK  L    +DNT+ L++L + 
Sbjct: 412 TSRVTSLDF----SPDGKS-LASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 232 DGHTRPVTCLAV--GRSRLCSGSMDNTIRVW 260
            GHT PVT +A     + L SGS D T+RVW
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 232 DGHTRPVTCLAV--GRSRLCSGSMDNTIRVWE 261
            GHT PVT +A       L SGS D TI++W+
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 137 VCCHWLLGNCVRGDECRFLHS 157
           +C  +  G C RGD C+F H 
Sbjct: 6   LCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 264 TLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVW 300
           + E + TL  HT    S+  +    ++L S S D TIK+W
Sbjct: 1   SGELLKTLKGHTGPVTSV-AFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 112 SSSASSTVS--DESGDKSTSKKTT-----LKNVCCHWLLGNCVRGDECRFLHSW-FCGEG 163
           S S+  T+   D     S  +  +     + +V           G     +  W      
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317

Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSG-SRDGT--AWNIESSAEFSLDGPVGEVYSMV 220
           L     L+GHE  VS ++       L SG S DGT   W++ +            V S+ 
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS 377

Query: 221 V--------------------ANEMLFAGAQDGHTRPVTCLAVGRS--RLCSGSMDNTIR 258
                                 +        DGHT  VT L        L SGS DNTIR
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437

Query: 259 VWELDTLEPVMTLND 273
           +W+L T    ++ + 
Sbjct: 438 LWDLKTSLKSVSFSP 452

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 266 EPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVW 300
           + + TL  HT    S+  +      L S S D T++VW
Sbjct: 2   KLLRTLKGHTGPVTSV-AFSPDGNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
PTZ00421	493	coronin; Provisional	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
PTZ00420	568	coronin; Provisional	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.86
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.86
KOG0289	506	consensus mRNA splicing factor [General function p	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.83
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG2048	691	consensus WD40 repeat protein [General function pr	99.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG2096	420	consensus WD40 repeat protein [General function pr	99.78
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.78
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG0639	705	consensus Transducin-like enhancer of split protei	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
KOG1274	933	consensus WD40 repeat protein [General function pr	99.76
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.74
KOG1539	910	consensus WD repeat protein [General function pred	99.73
KOG1273	405	consensus WD40 repeat protein [General function pr	99.71
KOG2048	691	consensus WD40 repeat protein [General function pr	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG2055	514	consensus WD40 repeat protein [General function pr	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.66
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.65
KOG1188	376	consensus WD40 repeat protein [General function pr	99.65
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.64
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
KOG1188	376	consensus WD40 repeat protein [General function pr	99.58
PRK11028	330	6-phosphogluconolactonase; Provisional	99.57
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.56
KOG4227	609	consensus WD40 repeat protein [General function pr	99.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.54
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.54
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.54
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.53
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.52
KOG1334	559	consensus WD40 repeat protein [General function pr	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.5
KOG4227	609	consensus WD40 repeat protein [General function pr	99.49
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.48
KOG1963	792	consensus WD40 repeat protein [General function pr	99.47
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.45
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
PRK01742	429	tolB translocation protein TolB; Provisional	99.44
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.42
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.41
KOG1310	758	consensus WD40 repeat protein [General function pr	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.36
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.34
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.33
KOG2321	703	consensus WD40 repeat protein [General function pr	99.33
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.33
KOG2139	445	consensus WD40 repeat protein [General function pr	99.31
PRK04922	433	tolB translocation protein TolB; Provisional	99.29
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.28
KOG2139	445	consensus WD40 repeat protein [General function pr	99.28
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.26
PRK03629	429	tolB translocation protein TolB; Provisional	99.25
PRK05137	435	tolB translocation protein TolB; Provisional	99.24
PRK02889	427	tolB translocation protein TolB; Provisional	99.21
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.21
PRK03629	429	tolB translocation protein TolB; Provisional	99.19
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.18
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.18
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.17
PRK04922	433	tolB translocation protein TolB; Provisional	99.17
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.15
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.14
PRK05137	435	tolB translocation protein TolB; Provisional	99.13
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.13
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.11
KOG1334	559	consensus WD40 repeat protein [General function pr	99.11
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.1
KOG2321	703	consensus WD40 repeat protein [General function pr	99.09
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.09
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.07
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.06
PRK00178	430	tolB translocation protein TolB; Provisional	99.04
PRK02889	427	tolB translocation protein TolB; Provisional	99.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.99
KOG2315	566	consensus Predicted translation initiation factor	98.96
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.91
KOG4547	541	consensus WD40 repeat-containing protein [General	98.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
KOG4547	541	consensus WD40 repeat-containing protein [General	98.88
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.84
PRK04792	448	tolB translocation protein TolB; Provisional	98.83
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.83
KOG2695	425	consensus WD40 repeat protein [General function pr	98.81
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.81
PRK01029	428	tolB translocation protein TolB; Provisional	98.81
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.8
PRK00178	430	tolB translocation protein TolB; Provisional	98.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.74
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.73
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.73
PRK04792	448	tolB translocation protein TolB; Provisional	98.72
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.69
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.68
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.67
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.65
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.54
PRK01029	428	tolB translocation protein TolB; Provisional	98.54
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.53
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.53
COG4946	668	Uncharacterized protein related to the periplasmic	98.51
KOG2695	425	consensus WD40 repeat protein [General function pr	98.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.5
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.45
KOG2314	698	consensus Translation initiation factor 3, subunit	98.39
KOG2315	566	consensus Predicted translation initiation factor	98.37
PRK04043	419	tolB translocation protein TolB; Provisional	98.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.31
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.3
COG4946	668	Uncharacterized protein related to the periplasmic	98.27
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.26
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.26
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.23
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.08
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.04
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.03
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.99
KOG2314	698	consensus Translation initiation factor 3, subunit	97.98
PRK04043	419	tolB translocation protein TolB; Provisional	97.97
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.92
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.87
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.83
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.74
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.65
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.56
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.46
KOG3621	726	consensus WD40 repeat-containing protein [General	97.43
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.4
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.39
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.24
PRK02888	635	nitrous-oxide reductase; Validated	97.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.16
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.13
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.13
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.04
KOG3621	726	consensus WD40 repeat-containing protein [General	96.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.77
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.71
KOG2395	644	consensus Protein involved in vacuole import and d	96.68
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.63
PHA02713	557	hypothetical protein; Provisional	96.59
PRK02888	635	nitrous-oxide reductase; Validated	96.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.49
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.46
KOG2444	238	consensus WD40 repeat protein [General function pr	96.41
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.17
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.97
PHA02713	557	hypothetical protein; Provisional	95.88
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.87
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.84
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.46
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.43
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.18
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.9
smart00356	27	ZnF_C3H1 zinc finger.	94.86
KOG2444	238	consensus WD40 repeat protein [General function pr	94.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.79
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.47
PHA03098	534	kelch-like protein; Provisional	94.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.26
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.86
COG3391	381	Uncharacterized conserved protein [Function unknow	93.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.29
PHA02790	480	Kelch-like protein; Provisional	93.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.02
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.99
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	92.7
KOG2395	644	consensus Protein involved in vacuole import and d	92.67
PHA03098	534	kelch-like protein; Provisional	92.38
PHA02790	480	Kelch-like protein; Provisional	92.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.33
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.32
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.22
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.06
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.98
COG5276	370	Uncharacterized conserved protein [Function unknow	91.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.44
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.32
COG5167	776	VID27 Protein involved in vacuole import and degra	91.29
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.23
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.14
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	90.79
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.56
COG3391	381	Uncharacterized conserved protein [Function unknow	89.62
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	89.6
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.37
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.09
PRK13616	591	lipoprotein LpqB; Provisional	88.73
KOG1040	325	consensus Polyadenylation factor I complex, subuni	88.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.9
PRK13616	591	lipoprotein LpqB; Provisional	87.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	87.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	87.09
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	86.31
KOG2247	615	consensus WD40 repeat-containing protein [General	86.18
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	85.44
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	85.17
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.22
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	83.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.42
COG5276	370	Uncharacterized conserved protein [Function unknow	82.21
COG5167	776	VID27 Protein involved in vacuole import and degra	82.13
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.71
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.47

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-44  Score=315.54  Aligned_cols=284  Identities=21%  Similarity=0.319  Sum_probs=256.1

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..++|||+|.|+|+||+++.....            ...||+..|-+++ |+|++.+||++|.+|    .|++||.++
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~TeTp~~------------t~KgH~~WVlcva-wsPDgk~iASG~~dg----~I~lwdpkt  188 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDTETPLF------------TCKGHKNWVLCVA-WSPDGKKIASGSKDG----SIRLWDPKT  188 (480)
T ss_pred             CCceEEecCCCceEEeeccCCCCcce------------eecCCccEEEEEE-ECCCcchhhccccCC----eEEEecCCC
Confidence            78899999999999999999776532            5779999999999 999999999999888    999999999


Q ss_pred             CceEEEEecccCCCeEEEEecC-----CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC-EEEEEecC-
Q 016134          163 GLTMLAKLEGHEKAVSGIALPL-----RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE-MLFAGAQD-  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~-----~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~~-  232 (394)
                      +.+....|.+|+..|++|+|.|     ..++|++++.||.  |||+..+.++ .+.+|..+|+++.|..+ .+++++.| 
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr  268 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR  268 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence            9999999999999999999965     6789999999999  7999999887 78899999999999966 99999988 


Q ss_pred             -----------------CCCCCEEEEEec-------------CC-------------------------eEEEEeCCCeE
Q 016134          233 -----------------GHTRPVTCLAVG-------------RS-------------------------RLCSGSMDNTI  257 (394)
Q Consensus       233 -----------------~h~~~V~~l~~~-------------~~-------------------------~l~sgs~Dg~V  257 (394)
                                       +|...|+.|+.+             ++                         .|++|+.|.++
T Consensus       269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence                             899999988865             33                         49999999999


Q ss_pred             EEEeCCC-CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134          258 RVWELDT-LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       258 ~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      .+|+... .+++..+.+|...|..+.|+  +.++|+++.|..|++||.++++.+..+.+|-..+..++    |+.|.+ +
T Consensus       349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva----wsaDsR-L  423 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA----WSADSR-L  423 (480)
T ss_pred             EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE----eccCcc-E
Confidence            9999754 55888899999999999999  78999999999999999999999999988876544443    588888 9


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          335 LICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      |++|+.|.++++||+++.++...+. +.++|.++.|+||| .+++|+.|..+++|.
T Consensus       424 lVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999988888 48899999999999 999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.7e-41  Score=302.04  Aligned_cols=274  Identities=24%  Similarity=0.305  Sum_probs=241.2

Q ss_pred             CCCCCcccc-cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc--ccccCCCeec
Q 016134           72 KKSPPSYNR-LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC--CHWLLGNCVR  148 (394)
Q Consensus        72 ~~~~~~~~~-~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~--~~~~~~~~~~  148 (394)
                      ..+|.+.-. ..++..|+|||-+.+++||+..+.+...            ..+||...+..+. |.|.  ..-+|+++.|
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~------------~l~gH~~~v~~~~-fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ------------TLRGHTSRVGAAV-FHPVDSDLNLATASAD  240 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE------------EEeccccceeeEE-EccCCCccceeeeccC
Confidence            466666655 4488899999999999999999775432            5889999999998 9986  4567766666


Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      |    ++++|++.+. .+++.+.+|...|..++|+|+|++|+|++.|.+  +||++++..+..                 
T Consensus       241 g----tvklw~~~~e-~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~-----------------  298 (459)
T KOG0272|consen  241 G----TVKLWKLSQE-TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL-----------------  298 (459)
T ss_pred             C----ceeeeccCCC-cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-----------------
Confidence            6    9999999887 899999999999999999999999999999999  899999987631                 


Q ss_pred             EEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134          227 FAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~  302 (394)
                          ..||...|.+++|+  |.++++|+.|..-||||++++.++..|.+|..+|.+|.|+  |..||||+.|++++|||+
T Consensus       299 ----QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  299 ----QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             ----hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence                22788888888886  8899999999999999999999999999999999999999  789999999999999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      +....+..+..|...+..+.    |+|+...+|+|++.|++++||..+++.++..+.+ ...|.++++++|+ .|+|++.
T Consensus       375 R~r~~ly~ipAH~nlVS~Vk----~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  375 RMRSELYTIPAHSNLVSQVK----YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             cccccceecccccchhhheE----ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence            99999888888876655444    5885555999999999999999999999998876 7789999999999 9999999


Q ss_pred             CCeEEEEe
Q 016134          381 AGMLGVWK  388 (394)
Q Consensus       381 Dg~I~vWd  388 (394)
                      |.++++|.
T Consensus       451 DRT~KLW~  458 (459)
T KOG0272|consen  451 DRTIKLWR  458 (459)
T ss_pred             Cceeeecc
Confidence            99999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-39  Score=286.40  Aligned_cols=262  Identities=23%  Similarity=0.281  Sum_probs=230.6

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      -..||..+|-+++ |+|.+..+++++    .|.++|+||+.+. .+..+.++|...|.|++|+|||+.||||+.||+  +
T Consensus       110 S~~GH~e~Vl~~~-fsp~g~~l~tGs----GD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQ-FSPTGSRLVTGS----GDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             ccCCCCCcEEEEE-ecCCCceEEecC----CCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            4669999999999 999998888654    4559999999987 889999999999999999999999999999999  5


Q ss_pred             eecCCCcEE--EecCCCCcEEEEEEcCC-------EEEEEecC------------------CCCCCEEEEEec-CCeEEE
Q 016134          199 WNIESSAEF--SLDGPVGEVYSMVVANE-------MLFAGAQD------------------GHTRPVTCLAVG-RSRLCS  250 (394)
Q Consensus       199 Wd~~~~~~~--~~~~~~~~v~~l~~~~~-------~l~~~~~~------------------~h~~~V~~l~~~-~~~l~s  250 (394)
                      ||.++++++  .+.+|...|.+++|.|-       .+++++.|                  +|+.+|+|+.|. .+++++
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS  263 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS  263 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence            999999987  78999999999999874       56666656                  899999999998 689999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-------------CC-------------------------EEEEEe
Q 016134          251 GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-------------DQ-------------------------FLLSCS  292 (394)
Q Consensus       251 gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-------------~~-------------------------~l~s~s  292 (394)
                      ||.|++|++|+...+++.+++++|...|+.++.+             +.                         .|++|+
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            9999999999999999999999999999999875             22                         499999


Q ss_pred             CCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEEC
Q 016134          293 LDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIG  370 (394)
Q Consensus       293 ~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~s  370 (394)
                      .|.++.+|+-... +++..+.+|...+.    .+.|+||+. ++|+++.|..|++||.++++.+..+. |-..|+.++|+
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn----~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws  418 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVN----HVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS  418 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhhee----eEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence            9999999986543 35555666654433    345799999 99999999999999999999999988 47889999999


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          371 PDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       371 p~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .|. +|++|+.|.++++|++.++.
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeee
Confidence            999 99999999999999998764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.2e-34  Score=245.96  Aligned_cols=270  Identities=17%  Similarity=0.230  Sum_probs=223.3

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ...|++  |+..|+|+|.|..+-|||.-|.+-.. .    -..+.       ..|-..+ ++|.+.++|.+..+.    .
T Consensus        60 ~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~h-a----ipl~s-------~WVMtCA-~sPSg~~VAcGGLdN----~  120 (343)
T KOG0286|consen   60 AMDWST--DSRRIVSASQDGKLIVWDSFTTNKVH-A----IPLPS-------SWVMTCA-YSPSGNFVACGGLDN----K  120 (343)
T ss_pred             eeEecC--CcCeEEeeccCCeEEEEEccccccee-E----EecCc-------eeEEEEE-ECCCCCeEEecCcCc----e
Confidence            345666  99999999999999999987665321 0    00111       2455666 999999999777666    8


Q ss_pred             EEEEEcCCC-----ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          155 LHSWFCGEG-----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       155 i~iWd~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      ..||++.+.     .+..+++.+|++.+.|+.|-+ ...|+|+|.|.+  +||+++++...                   
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~-------------------  180 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ-------------------  180 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE-------------------
Confidence            889988633     256788999999999999976 567999999999  79999999874                   


Q ss_pred             EEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134          228 AGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~  302 (394)
                        .+.+|...|.+|.+.   ++.+++|+.|++.+|||++.+.++++|.+|...|.++.|.  |.-|++|++|++.++||+
T Consensus       181 --~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  181 --VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             --EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence              222667777777765   5889999999999999999999999999999999999999  789999999999999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      |..+.+..+........+.+  +.|+..|+ +|++|..|.++.+||.-.++.+..+.. +..|+++..+||| .++||+.
T Consensus       259 RaD~~~a~ys~~~~~~gitS--v~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW  335 (343)
T KOG0286|consen  259 RADQELAVYSHDSIICGITS--VAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW  335 (343)
T ss_pred             cCCcEEeeeccCcccCCcee--EEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch
Confidence            99888877764443334443  35789999 899999999999999999988888876 7789999999999 9999999


Q ss_pred             CCeEEEEe
Q 016134          381 AGMLGVWK  388 (394)
Q Consensus       381 Dg~I~vWd  388 (394)
                      |.+|+||.
T Consensus       336 Ds~lriW~  343 (343)
T KOG0286|consen  336 DSTLRIWA  343 (343)
T ss_pred             hHheeecC
Confidence            99999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-34  Score=261.51  Aligned_cols=300  Identities=18%  Similarity=0.217  Sum_probs=247.1

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccC-----CCCccceeeeccccccccccCCCeecC
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDE-----SGDKSTSKKTTLKNVCCHWLLGNCVRG  149 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~-----~g~~~~v~~~~~~~~~~~~~~~~~~~g  149 (394)
                      -.+|+|+ ..+.+++|++|-+.|+|++....-..   +.-...+....     ....+.|++++ |+.++.+||++..+|
T Consensus       183 ~~~WnP~-~~~llasg~~~s~ari~~l~e~~~~~---~~q~~lrh~~~~~~~s~~~nkdVT~L~-Wn~~G~~LatG~~~G  257 (524)
T KOG0273|consen  183 ICAWNPL-RDGLLASGSGDSTARIWNLLENSNIG---STQLVLRHCIREGGKSVPSNKDVTSLD-WNNDGTLLATGSEDG  257 (524)
T ss_pred             EEecCch-hhhhhhccCCccceeeeeehhhcccc---chhhhhhhhhhhhcccCCccCCcceEE-ecCCCCeEEEeecCc
Confidence            3467762 22256889999999999988511100   00001111111     12237899999 999999999998888


Q ss_pred             CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC-E
Q 016134          150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE-M  225 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~-~  225 (394)
                          .+|||+...  .++.+|..|+++|.+|.|+..|++|++++.|++  +||..+++.. .+.-+..+...+.|..+ .
T Consensus       258 ----~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~  331 (524)
T KOG0273|consen  258 ----EARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE  331 (524)
T ss_pred             ----EEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence                999999865  578899999999999999999999999999999  6999998876 44556666566777554 4


Q ss_pred             EEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-
Q 016134          226 LFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-  284 (394)
Q Consensus       226 l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-  284 (394)
                      +++.+.+                  +|.++|.+|.|+  +.+|+++|.|++++||.+....+...|.+|...|+.+.|+ 
T Consensus       332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence            4433333                  899999999999  8899999999999999999999999999999999999987 


Q ss_pred             ----------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          285 ----------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       285 ----------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                                +..+++++.|++|++||+..+.++..+..|..++..++    |+|+|+ ++++|+.|+.|.||+.++++.
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva----fS~~g~-ylAsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA----FSPNGR-YLASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE----ecCCCc-EEEecCCCCeeEeccccchhe
Confidence                      35899999999999999999999999988887665554    599999 999999999999999999999


Q ss_pred             eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          355 RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       355 ~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ...+.....|..++|+.+| +|..+-.|+.+++-|+.
T Consensus       487 ~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  487 VKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999988899999999999 99999999999998875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-35  Score=267.08  Aligned_cols=254  Identities=20%  Similarity=0.303  Sum_probs=214.0

Q ss_pred             eEEEeeeCccCCCCCccccccCCCcccCCCcccCCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccc
Q 016134           39 VCVYVLEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASST  118 (394)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~  118 (394)
                      +|+.|.+..||--.-=.-|..-            -+...|.|..+...++|+|.|+++++|.+++.....          
T Consensus       198 ~~kvW~~~~~~~~~~l~gH~~~------------v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~----------  255 (459)
T KOG0272|consen  198 LVKVWSVPQCNLLQTLRGHTSR------------VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ----------  255 (459)
T ss_pred             ceeEeecCCcceeEEEeccccc------------eeeEEEccCCCccceeeeccCCceeeeccCCCcchh----------
Confidence            8999999998543222223221            133444442235578999999999999999765443          


Q ss_pred             cccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-
Q 016134          119 VSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-  197 (394)
Q Consensus       119 ~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-  197 (394)
                        ...||...|..|+ |+|.|.|++++|+|-    +-++||+.++ ..+...+||...|.+|+|.+||.+++||+.|.. 
T Consensus       256 --~l~gH~~RVs~Va-fHPsG~~L~TasfD~----tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  256 --DLEGHLARVSRVA-FHPSGKFLGTASFDS----TWRLWDLETK-SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG  327 (459)
T ss_pred             --hhhcchhhheeee-ecCCCceeeeccccc----chhhcccccc-hhhHhhcccccccceeEecCCCceeeccCccchh
Confidence              6779999999999 999999999999998    9999999988 556667899999999999999999999999988 


Q ss_pred             -eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 016134          198 -AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH  274 (394)
Q Consensus       198 -vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h  274 (394)
                       |||++++.++.+                     +++|..+|.+++|+  |..|+||+.|++++|||++..+++.++.+|
T Consensus       328 RvWDlRtgr~im~---------------------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH  386 (459)
T KOG0272|consen  328 RVWDLRTGRCIMF---------------------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH  386 (459)
T ss_pred             heeecccCcEEEE---------------------ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc
Confidence             999999998742                     23677777777776  567999999999999999999999999999


Q ss_pred             CCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          275 TDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       275 ~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                      .+-|+.|.|.   |.+|+|++.|++++||..++..+++.+.+|...+..+.+    ++++. ++++++.|+++++|.
T Consensus       387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di----s~d~~-~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI----SPDSQ-AIATSSFDRTIKLWR  458 (459)
T ss_pred             cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe----ccCCc-eEEEeccCceeeecc
Confidence            9999999998   789999999999999999999999999999876554444    89999 999999999999995

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.6e-34  Score=241.73  Aligned_cols=274  Identities=22%  Similarity=0.310  Sum_probs=212.5

Q ss_pred             CCCcccc-ccccc--ccccCCCCCcccccccCCCC-CCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC
Q 016134           74 SPPSYNR-LKNNL--WVSSGSEDRIPHVRNRENPG-YTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG  149 (394)
Q Consensus        74 ~~~~~~~-~~~~~--~~~s~s~d~~~~~w~~~~~~-~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g  149 (394)
                      ..--|+. .+|..  -|+|+|+||.+|+|+...+. ++-         ...-.-||+++|++++ |+|++++||+++++.
T Consensus        14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c---------k~vld~~hkrsVRsvA-wsp~g~~La~aSFD~   83 (312)
T KOG0645|consen   14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC---------KTVLDDGHKRSVRSVA-WSPHGRYLASASFDA   83 (312)
T ss_pred             CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE---------EEeccccchheeeeee-ecCCCcEEEEeeccc
Confidence            3334444 44553  68999999999999998533 211         0112348999999999 999999999999998


Q ss_pred             CCCCeEEEEEcC-CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          150 DECRFLHSWFCG-EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       150 ~~~~~i~iWd~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                          ++-||.-. ..++++.+++||...|.+++|+++|.+|||++.|+.|  |.+..+..+.                  
T Consensus        84 ----t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe------------------  141 (312)
T KOG0645|consen   84 ----TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE------------------  141 (312)
T ss_pred             ----eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE------------------
Confidence                99999875 5579999999999999999999999999999999995  5555444432                  


Q ss_pred             EEEecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCC---CCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134          227 FAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELD---TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV  299 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v  299 (394)
                      +.+....|+..|.-+.|++  .+|+++|.|.+|++|+-.   ..+++++|.+|...|.+++|+  |..|++++.|++++|
T Consensus       142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I  221 (312)
T KOG0645|consen  142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI  221 (312)
T ss_pred             EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence            2234458999999999996  889999999999999765   457899999999999999999  789999999999999


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC------ceeEEE--ecCCcEEEEEECC
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF------MERGRI--FSKHEVRVIEIGP  371 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~------~~~~~~--~~~~~v~~l~~sp  371 (394)
                      |-+...-    ...|......+++    . ++  +|++++.|+.|++|.....      +.+...  .|...|++++|.|
T Consensus       222 w~~~~~~----~~~~sr~~Y~v~W----~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  222 WRLYTDL----SGMHSRALYDVPW----D-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP  290 (312)
T ss_pred             eeeccCc----chhcccceEeeee----c-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence            9865321    1112222222332    3 33  7999999999999976643      122212  2355799999999


Q ss_pred             CC--EEEEEeCCCeEEEEeCC
Q 016134          372 DK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       372 ~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      ..  +|++|+.||.|++|.+.
T Consensus       291 ~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  291 KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCceeecCCCceEEEEEec
Confidence            53  99999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-33  Score=238.97  Aligned_cols=265  Identities=20%  Similarity=0.269  Sum_probs=216.9

Q ss_pred             ccccccCCCCCcccccccCCCCC--CCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGY--TGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG  161 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~--~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~  161 (394)
                      ..-++++|-|+++.+|++.....  ....         .-..||...|..+. .++++.+..+++.++    ++|+||+.
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~---------r~~~GHsH~v~dv~-~s~dg~~alS~swD~----~lrlWDl~   93 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPV---------RRLTGHSHFVSDVV-LSSDGNFALSASWDG----TLRLWDLA   93 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCcee---------eeeeccceEecceE-EccCCceEEeccccc----eEEEEEec
Confidence            34567889999999999987532  1111         13569999999999 999999998877777    99999999


Q ss_pred             CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      ++ +..+.|.||...|.+++|++|.+.|+||+.|.+  +|++.....+.+..                    +.+...|.
T Consensus        94 ~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~--------------------~~~~~WVs  152 (315)
T KOG0279|consen   94 TG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE--------------------DSHREWVS  152 (315)
T ss_pred             CC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec--------------------CCCcCcEE
Confidence            98 899999999999999999999999999999999  69988776655432                    24567788


Q ss_pred             EEEecC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134          240 CLAVGR----SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT  313 (394)
Q Consensus       240 ~l~~~~----~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  313 (394)
                      |+.|++    ..|++++.|++|++||+++.+....+.+|++.++.+.++  |.++++|+.||.+.+||++.++.+..+..
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a  232 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA  232 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence            888874    369999999999999999999999999999999999999  88999999999999999999988665543


Q ss_pred             ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----------CCcEEEEEECCCC-EEEEEeCCC
Q 016134          314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----------KHEVRVIEIGPDK-LFFTGDGAG  382 (394)
Q Consensus       314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------~~~v~~l~~sp~~-~l~tgs~Dg  382 (394)
                       .  ..+.+  .+|+|+.- +|+ ...+..|+|||+.+...+..+..          .-...+++|++|| .|+.|-.|+
T Consensus       233 -~--~~v~s--l~fspnry-wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  233 -F--DIVNS--LCFSPNRY-WLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             -C--CeEee--EEecCCce-eEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence             2  23333  34788764 444 55567799999999877665543          1236788999999 999999999


Q ss_pred             eEEEEeCC
Q 016134          383 MLGVWKLL  390 (394)
Q Consensus       383 ~I~vWd~~  390 (394)
                      .|++|.+.
T Consensus       306 ~irv~qv~  313 (315)
T KOG0279|consen  306 VIRVWQVA  313 (315)
T ss_pred             cEEEEEee
Confidence            99999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.5e-32  Score=228.14  Aligned_cols=266  Identities=19%  Similarity=0.225  Sum_probs=211.4

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      +.-.++|+|-|.|||+|.+.+|.+...            .+-....|..+. ..|++.+||.++.-     .||+||+.+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rT------------iqh~dsqVNrLe-iTpdk~~LAaa~~q-----hvRlyD~~S   70 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRT------------IQHPDSQVNRLE-ITPDKKDLAAAGNQ-----HVRLYDLNS   70 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEE------------EecCccceeeEE-EcCCcchhhhccCC-----eeEEEEccC
Confidence            445678999999999999999997641            222224567777 88999999988875     699999976


Q ss_pred             Cc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          163 GL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       163 ~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      +. .++.++.+|++.|+++.|..+|+.++||+.||+  |||++...+.+..                      .|..+|+
T Consensus        71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------------------~~~spVn  128 (311)
T KOG0315|consen   71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------------------QHNSPVN  128 (311)
T ss_pred             CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc----------------------cCCCCcc
Confidence            54 489999999999999999999999999999999  7999996665544                      4556677


Q ss_pred             EEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce------e
Q 016134          240 CLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN------L  308 (394)
Q Consensus       240 ~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~------~  308 (394)
                      ++..++  ..|++|..+|.|+|||+.+..+...+. .....|.++...  |.+|+.+...|...+|++-....      +
T Consensus       129 ~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~  208 (311)
T KOG0315|consen  129 TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV  208 (311)
T ss_pred             eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence            777763  469999999999999999887766654 334567777766  89999999999999999876432      2


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEE
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLG  385 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~  385 (394)
                      .++..|.    ...+.+.++|+++ +|++++.|.+++||+.+++ +....+.. ...++.++|+.|+ +|+|++.|+.++
T Consensus       209 ~k~~ah~----~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~r  283 (311)
T KOG0315|consen  209 HKFQAHN----GHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTAR  283 (311)
T ss_pred             hheeccc----ceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCcee
Confidence            2333333    2334445799999 9999999999999999998 33333333 5579999999999 999999999999


Q ss_pred             EEeCCCCC
Q 016134          386 VWKLLAKP  393 (394)
Q Consensus       386 vWd~~~~~  393 (394)
                      +|++....
T Consensus       284 lW~~~~~k  291 (311)
T KOG0315|consen  284 LWDLSAGK  291 (311)
T ss_pred             ecccccCc
Confidence            99998754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=248.05  Aligned_cols=265  Identities=23%  Similarity=0.289  Sum_probs=233.4

Q ss_pred             ccccc-ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEE
Q 016134           81 LKNNL-WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWF  159 (394)
Q Consensus        81 ~~~~~-~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd  159 (394)
                      ++|+- ..+++|.|.++++||.+++.+..            +.+||...+-.++ +.-.+.++++.+.|-    .+++||
T Consensus       116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~------------~LrGHt~sv~di~-~~a~Gk~l~tcSsDl----~~~LWd  178 (406)
T KOG0295|consen  116 FHPSEALVVSASEDATIKVFDTETGELER------------SLRGHTDSVFDIS-FDASGKYLATCSSDL----SAKLWD  178 (406)
T ss_pred             eccCceEEEEecCCceEEEEEccchhhhh------------hhhccccceeEEE-EecCccEEEecCCcc----chhhee
Confidence            55665 34577789999999999999853            8999999999999 998999999887776    599999


Q ss_pred             cCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEEEEcCCEEEEEecCCCCC
Q 016134          160 CGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSMVVANEMLFAGAQDGHTR  236 (394)
Q Consensus       160 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~~~~~h~~  236 (394)
                      ..+.+++++.+.+|...|.+++|-|.|.+|+|++.|.+  .|++.++-++. +.                      +|..
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~----------------------~h~e  236 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP----------------------GHSE  236 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc----------------------CchH
Confidence            98878999999999999999999999999999999999  49999999873 33                      5555


Q ss_pred             CEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------------C-----CEEEEEeCCCcE
Q 016134          237 PVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------------D-----QFLLSCSLDHTI  297 (394)
Q Consensus       237 ~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------------~-----~~l~s~s~Dg~i  297 (394)
                      .|.-++.+  +.++++++.|.+|++|-+.++++...+..|.-+|.+++|.            +     +++.+++.|++|
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            66666665  6789999999999999999999999999999999999884            2     599999999999


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EE
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF  375 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l  375 (394)
                      ++||+.++.++.++.+|...+..++    |+|.|+ +|+++.+|+++++||+++.++...+.. .+-|++++|+.+. ++
T Consensus       317 k~wdv~tg~cL~tL~ghdnwVr~~a----f~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  317 KIWDVSTGMCLFTLVGHDNWVRGVA----FSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             EEEeccCCeEEEEEecccceeeeeE----EcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence            9999999999999999987666555    499999 999999999999999999988888765 7779999999988 99


Q ss_pred             EEEeCCCeEEEEeC
Q 016134          376 FTGDGAGMLGVWKL  389 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~  389 (394)
                      +||+-|..+++|.-
T Consensus       392 vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  392 VTGSVDQTVKVWEC  405 (406)
T ss_pred             Eeccccceeeeeec
Confidence            99999999999973

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.4e-34  Score=255.62  Aligned_cols=294  Identities=19%  Similarity=0.284  Sum_probs=241.1

Q ss_pred             eeCccCCCCCccccccCCCcccCCCcccCCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCC
Q 016134           44 LEGRCNRNPCRFAHTESSSLLLSNPKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDES  123 (394)
Q Consensus        44 ~~~~~~~~~~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~  123 (394)
                      +.-.|+.++.+|+|.-+=..-      ..-.-+.|.+  ++-.|++||+-..+.+||..+-++.            ...+
T Consensus        76 ~~dp~~~~~tKf~h~s~NKvk------c~V~~v~WtP--eGRRLltgs~SGEFtLWNg~~fnFE------------tilQ  135 (464)
T KOG0284|consen   76 LDDPSSAFTTKFVHTSSNKVK------CPVNVVRWTP--EGRRLLTGSQSGEFTLWNGTSFNFE------------TILQ  135 (464)
T ss_pred             cCCcccccccceEeccccccc------cceeeEEEcC--CCceeEeecccccEEEecCceeeHH------------HHhh
Confidence            345555566666666433221      1234567888  8889999999999999998654443            2567


Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEEEeCCCc--eee
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFSGSRDGT--AWN  200 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~--vWd  200 (394)
                      .|...|++.. |+..+.|+.++    +.+++|++|+.+.  ..++.+++|. ..|.+++|+|+...|+|++.|++  |||
T Consensus       136 aHDs~Vr~m~-ws~~g~wmiSg----D~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  136 AHDSPVRTMK-WSHNGTWMISG----DKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             hhcccceeEE-EccCCCEEEEc----CCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence            8888999999 99999998754    5555999999854  3456666665 99999999999999999999999  699


Q ss_pred             cCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCc
Q 016134          201 IESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP  278 (394)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v  278 (394)
                      ....+..+.                     ..+|.-.|.+++|+  ..+|++++.|..|++||.++++|+.++.+|...|
T Consensus       209 f~~~kee~v---------------------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV  267 (464)
T KOG0284|consen  209 FRMPKEERV---------------------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV  267 (464)
T ss_pred             ccCCchhhe---------------------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence            876654321                     12788889999998  5789999999999999999999999999999999


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      +.+.|.  +++|+++|.|..++++|+++.+.+..+..|+.......    |+|-...+|++|+.||.|..|.+...+++.
T Consensus       268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~----WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~  343 (464)
T KOG0284|consen  268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT----WHPLNESLFTSGGSDGSVVHWVVGLEEPLG  343 (464)
T ss_pred             EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec----cccccccceeeccCCCceEEEecccccccc
Confidence            999999  88999999999999999998888888888887665554    478777799999999999999998666666


Q ss_pred             EEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          357 RIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       357 ~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      .+..  ...|++++|+|-| +|++|+.|.++++|.-
T Consensus       344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             CCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            6654  6679999999999 9999999999999964

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.5e-31  Score=228.01  Aligned_cols=224  Identities=21%  Similarity=0.346  Sum_probs=203.4

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------  232 (394)
                      ++..++|+||.+.|.++.|++|.++|+++|.||.  |||.-+.... .+.-+...|...+|+|.  ++++|+.|      
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            3556899999999999999999999999999999  6998766554 66778889999999998  88888777      


Q ss_pred             ------------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEE
Q 016134          233 ------------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLS  290 (394)
Q Consensus       233 ------------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s  290 (394)
                                        +|+..+.|..|- .+.|+++|.|.++.+||+++++.++.|.+|.+.|.++.+.   ++.+++
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence                              899999999996 7889999999999999999999999999999999999998   689999


Q ss_pred             EeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEE
Q 016134          291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVI  367 (394)
Q Consensus       291 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l  367 (394)
                      |+.|+..+|||+|.+.+++.+.+|...+..+.+    .|+|. -+++|++|++.++||++..+++..+.+   ..+|+++
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~f----fP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF----FPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV  279 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEE----ccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence            999999999999999999999999988776654    89998 899999999999999999998888876   5579999


Q ss_pred             EECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          368 EIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       368 ~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +|+..| +|++|..|.++.+||.-..
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             EEcccccEEEeeecCCceeEeecccc
Confidence            999999 9999999999999997544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.3e-33  Score=244.13  Aligned_cols=245  Identities=22%  Similarity=0.350  Sum_probs=213.3

Q ss_pred             cccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCC
Q 016134          138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVG  214 (394)
Q Consensus       138 ~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~  214 (394)
                      |-+|-..--++|..|.+|+|||.++- .+++.+.||++.|.|+.|.  .+.|++|+.|.+  |||+++++++ .+..|..
T Consensus       202 ClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHce  278 (499)
T KOG0281|consen  202 CLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE  278 (499)
T ss_pred             EEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcc
Confidence            33444445567888889999998775 8899999999999999984  569999999999  6999999998 6788999


Q ss_pred             cEEEEEEcCCEEEEEecC---------------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC
Q 016134          215 EVYSMVVANEMLFAGAQD---------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND  273 (394)
Q Consensus       215 ~v~~l~~~~~~l~~~~~~---------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~  273 (394)
                      .|..+.|++.++++++.|                     ||...|+.+.|+.+++++++.|.+|++|++.++++++++.+
T Consensus       279 aVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g  358 (499)
T KOG0281|consen  279 AVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG  358 (499)
T ss_pred             eeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhc
Confidence            999999999999998887                     89999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          274 HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       274 h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      |...|.|+.+.++++++|+.|.+|++||+..+.++..+.+|++-+..+.+      +.+ -+++|..||+|+|||+..+.
T Consensus       359 HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF------d~k-rIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  359 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------DNK-RIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee------cCc-eeeeccccceEEEEeccccc
Confidence            99999999999999999999999999999999999999999887666654      445 79999999999999998764


Q ss_pred             eeE----------EEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          354 ERG----------RIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       354 ~~~----------~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ...          ...+.+.|..+.|..- .+++++.|.+|.|||+...+
T Consensus       432 dpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  432 DPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             CCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEEEEcCCCC
Confidence            331          1123567999988432 89999999999999987654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-31  Score=226.39  Aligned_cols=242  Identities=20%  Similarity=0.279  Sum_probs=202.0

Q ss_pred             ccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134          120 SDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD  195 (394)
Q Consensus       120 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D  195 (394)
                      +...||+..|+.++ -.+..   ....++.+.|.++.+|++...    ..+++.|.||...|..+..++||++.++++.|
T Consensus         9 ~tl~gh~d~Vt~la-~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    9 GTLEGHTDWVTALA-IKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             eeecCCCceEEEEE-eecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            35778888999888 55542   223456677779999998532    25789999999999999999999999999999


Q ss_pred             Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          196 GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       196 g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      ++  +||+.+++....                     +.+|...|.+++|+  ..++++|+.|.+|++|+.. +.+..++
T Consensus        85 ~~lrlWDl~~g~~t~~---------------------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~  142 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRR---------------------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTI  142 (315)
T ss_pred             ceEEEEEecCCcEEEE---------------------EEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEE
Confidence            99  699999876531                     12788888888887  5789999999999999987 5666666


Q ss_pred             cCC--CCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEE
Q 016134          272 NDH--TDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVH  345 (394)
Q Consensus       272 ~~h--~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~  345 (394)
                      ..+  .+.|.++.|+    +.+|++++.|++|++||+++.+....+.+|......+.+    +|||. ++++|+.||.+.
T Consensus       143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v----SpDGs-lcasGgkdg~~~  217 (315)
T KOG0279|consen  143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV----SPDGS-LCASGGKDGEAM  217 (315)
T ss_pred             ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEE----CCCCC-EEecCCCCceEE
Confidence            544  7899999999    458999999999999999998888888888766555544    99999 999999999999


Q ss_pred             EEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          346 LYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       346 iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +||++.++.+..+.+...|.+++|+|+.+.++...+..|+|||+.++
T Consensus       218 LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  218 LWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             EEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence            99999999999999999999999999995555566667999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.2e-32  Score=239.28  Aligned_cols=239  Identities=23%  Similarity=0.426  Sum_probs=211.7

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--e
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--W  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--W  199 (394)
                      ..||...|++++ +.|...|+++++.|+    +|+|||+.++ ++..++.||...|..+++++-..||++++.|+.|  |
T Consensus       147 i~gHlgWVr~va-vdP~n~wf~tgs~Dr----tikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  147 ISGHLGWVRSVA-VDPGNEWFATGSADR----TIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhccceEEEEe-eCCCceeEEecCCCc----eeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            349999999999 999999999877766    9999999999 9999999999999999999999999999999995  9


Q ss_pred             ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Q 016134          200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA  277 (394)
Q Consensus       200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~  277 (394)
                      |++..+.++                     .+-+|-..|.|++.+  -+.|++|+.|.++||||+++...+..+.+|..+
T Consensus       221 DLe~nkvIR---------------------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  221 DLEYNKVIR---------------------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             echhhhhHH---------------------HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence            999988764                     122778888888887  467999999999999999999999999999999


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      |.++.+.  +..+++||.|++|++||++.++....+..|+..+.++++    +|... .+++++.| .|+-|+++.+..+
T Consensus       280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l----hP~e~-~fASas~d-nik~w~~p~g~f~  353 (460)
T KOG0285|consen  280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL----HPKEN-LFASASPD-NIKQWKLPEGEFL  353 (460)
T ss_pred             ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec----CCchh-hhhccCCc-cceeccCCccchh
Confidence            9999998  789999999999999999999998888887765555554    88876 88888877 5999999999887


Q ss_pred             EEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          356 GRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       356 ~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ..+.. ..-|++++...|+++++|++.|.|.+||+.+..
T Consensus       354 ~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  354 QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             hccccccceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence            77554 556999999999999999999999999998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=240.87  Aligned_cols=273  Identities=22%  Similarity=0.339  Sum_probs=228.1

Q ss_pred             CCCCcccc---cc-cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec
Q 016134           73 KSPPSYNR---LK-NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        73 ~~~~~~~~---~~-~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      .+-+.|.+   +. -+.|++|||+|++++|||+.++.+--            ...||...|+.++ +++--.|+.++..+
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl------------tltGhi~~vr~va-vS~rHpYlFs~ged  214 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL------------TLTGHIETVRGVA-VSKRHPYLFSAGED  214 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE------------eecchhheeeeee-ecccCceEEEecCC
Confidence            44556766   23 35699999999999999999999743            5778999999999 99888888766555


Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      +    .|+.||++.+ +.++.+.||-..|.|++.+|.-+.|+||+.|.+  |||+++...+.                  
T Consensus       215 k----~VKCwDLe~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~------------------  271 (460)
T KOG0285|consen  215 K----QVKCWDLEYN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH------------------  271 (460)
T ss_pred             C----eeEEEechhh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE------------------
Confidence            5    9999999988 899999999999999999999999999999999  79999987663                  


Q ss_pred             EEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134          227 FAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~  302 (394)
                         ...+|..+|..+.+.  ...+++||.|++|++||++.++...++..|...|.+++.+  ...|++++.| .|+-|++
T Consensus       272 ---~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~  347 (460)
T KOG0285|consen  272 ---VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKL  347 (460)
T ss_pred             ---EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence               222778888888876  6789999999999999999999999999999999999998  4567777776 5899999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE---------ecCCcEEEEEECCCC
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI---------FSKHEVRVIEIGPDK  373 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~---------~~~~~v~~l~~sp~~  373 (394)
                      ..+..+..+..|......++.    +.|+  ++++|+++|.|.+||.+++...+..         ..+..|.+.+|...+
T Consensus       348 p~g~f~~nlsgh~~iintl~~----nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  348 PEGEFLQNLSGHNAIINTLSV----NSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             Cccchhhccccccceeeeeee----ccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            999888887777655555544    4454  7999999999999999987544433         125569999999999


Q ss_pred             -EEEEEeCCCeEEEEeCCC
Q 016134          374 -LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       374 -~l~tgs~Dg~I~vWd~~~  391 (394)
                       .|+||..|.+|++|.-++
T Consensus       422 ~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  422 SRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ceEEeccCCcceEEEeccc
Confidence             999999999999998554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.8e-32  Score=256.83  Aligned_cols=290  Identities=21%  Similarity=0.287  Sum_probs=228.3

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      .++.+++|+.|+.++|||+..+..+.            -.+||+..|.++. |.|.-.+  --.++|+.|+.+++||+.+
T Consensus       116 ~g~LlAtggaD~~v~VWdi~~~~~th------------~fkG~gGvVssl~-F~~~~~~--~lL~sg~~D~~v~vwnl~~  180 (775)
T KOG0319|consen  116 TGTLLATGGADGRVKVWDIKNGYCTH------------SFKGHGGVVSSLL-FHPHWNR--WLLASGATDGTVRVWNLND  180 (775)
T ss_pred             CCceEEeccccceEEEEEeeCCEEEE------------EecCCCceEEEEE-eCCccch--hheeecCCCceEEEEEccc
Confidence            55677899999999999999988764            5889999999998 8886555  3456778888999999986


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEe-------------------------------
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSL-------------------------------  209 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~-------------------------------  209 (394)
                      ...++.+++.|...|++++|.+|+.-+++++.|..  |||+.+.+....                               
T Consensus       181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g  260 (775)
T KOG0319|consen  181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG  260 (775)
T ss_pred             CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence            65678899999999999999999999999999998  577644322111                               


Q ss_pred             -----------------------------------------------------------cCCCCcEEEEEEcC---CEEE
Q 016134          210 -----------------------------------------------------------DGPVGEVYSMVVAN---EMLF  227 (394)
Q Consensus       210 -----------------------------------------------------------~~~~~~v~~l~~~~---~~l~  227 (394)
                                                                                 .+..++|.+|.|-.   +.++
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la  340 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA  340 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence                                                                       11122333333322   1333


Q ss_pred             EEecC-----------------CCCCCEEEEE-ec-CCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCcEEEEEc
Q 016134          228 AGAQD-----------------GHTRPVTCLA-VG-RSRLCSGSMDNTIRVWELDTLE----PVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       228 ~~~~~-----------------~h~~~V~~l~-~~-~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~  284 (394)
                      +++..                 +|+..|.++. |+ +.+|++|+.|.++++|.++.+.    ++....+|...|.+++++
T Consensus       341 VATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  341 VATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS  420 (775)
T ss_pred             EEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec
Confidence            33322                 8999999999 54 6699999999999999884432    456667899999999998


Q ss_pred             ---CCEEEEEeCCCcEEEEEeCCCcee---------eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          285 ---DQFLLSCSLDHTIKVWFATGRGNL---------EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       285 ---~~~l~s~s~Dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                         ..+|+++|.|.+|++|++...+..         .....|...+..+++    +|+.+ +++||+.|.+.+||+++..
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai----a~ndk-LiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI----APNDK-LIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe----cCCCc-eEEecccccceeeecccCc
Confidence               579999999999999999762211         122345555666665    89888 9999999999999999988


Q ss_pred             ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          353 MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .....+.+ ...|+++.|+|.. .++|+|.|++|+||.+++.
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF  537 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence            88888876 6679999999988 9999999999999999763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-30  Score=239.85  Aligned_cols=294  Identities=16%  Similarity=0.231  Sum_probs=231.3

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC  152 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~  152 (394)
                      .=.++|+|  |+++++|.|+|+++||||+.+..+..           +|..|.+..-     +.....|......+-+..
T Consensus       238 IfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~-----------t~~~~~~v~d-----qqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  238 IFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVS-----------TWPMGSTVED-----QQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             EEEEEECC--CCceEEEecCCceEEEEEeeccceEE-----------EeecCCchhc-----eEEEEEEeCCeEEEEEcC
Confidence            44578999  99999999999999999999998753           3666665211     334445555555555566


Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEe--cCCCCcEEEEEEcC-CEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSL--DGPVGEVYSMVVAN-EMLF  227 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~--~~~~~~v~~l~~~~-~~l~  227 (394)
                      |+|.+++.... .+++++.||.+.|++++.++++++|+||+.||.|  |+..++..-++  ..|..+|..++... +.++
T Consensus       300 G~in~ln~~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~  378 (603)
T KOG0318|consen  300 GTINYLNPSDP-SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF  378 (603)
T ss_pred             cEEEEecccCC-ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence            69999999888 5999999999999999999999999999999996  99998887766  56888888888777 4666


Q ss_pred             EEecC---------------------------------------------------------CCCCCEEEEEec--CCeE
Q 016134          228 AGAQD---------------------------------------------------------GHTRPVTCLAVG--RSRL  248 (394)
Q Consensus       228 ~~~~~---------------------------------------------------------~h~~~V~~l~~~--~~~l  248 (394)
                      +.+.|                                                         .-.-...+++++  ++.+
T Consensus       379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence            65555                                                         011123344554  6789


Q ss_pred             EEEeCCCeEEEEeCCCCce--eEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec-ccCCcceEEE
Q 016134          249 CSGSMDNTIRVWELDTLEP--VMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT-HKEDNGVLAL  323 (394)
Q Consensus       249 ~sgs~Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~  323 (394)
                      +.|+.|+.|+||.+...+.  ...+..|.++|++++|+  +.+|+++...+.+.+||+.+.+....... |.  ..+.  
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt--akI~--  534 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHT--AKIN--  534 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeee--eeEE--
Confidence            9999999999999986543  33456799999999999  78999999999999999988766333222 33  2333  


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      +++|+|+.+ ++|+|+.|..|.||++........+..  ...|+.+.|-.+..|++.++|..|++|++.
T Consensus       535 ~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  535 CVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEeCCCce-EEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence            335799999 999999999999999998766655554  445999999988899999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=3.7e-31  Score=254.51  Aligned_cols=201  Identities=19%  Similarity=0.324  Sum_probs=180.8

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      ....++.||+++|..+.|+|+.++|+++|.|++  +|.+++..++.                     ...+|..+|+++.
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---------------------~y~GH~~PVwdV~  500 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---------------------IYKGHLAPVWDVQ  500 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---------------------EecCCCcceeeEE
Confidence            345668999999999999999999999999999  69999988763                     2237788888888


Q ss_pred             ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134          243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                      |+  |-+|||+|.|++.++|.....++++.+.+|.+.|.|+.|+  ..++++||.|.+||+||+.++..++.+.+|..++
T Consensus       501 F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V  580 (707)
T KOG0263|consen  501 FAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV  580 (707)
T ss_pred             ecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence            87  6789999999999999999999999999999999999999  6799999999999999999999999999988766


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .+++    |+|+|. +|++|+.|+.|.|||+.+++.+..+.. .+.|.++.|+.+| .||+|+.|.+|++||+..
T Consensus       581 ~al~----~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  581 TALA----FSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEE----EcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            5554    599999 999999999999999999988877765 7779999999999 999999999999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.7e-30  Score=250.76  Aligned_cols=268  Identities=24%  Similarity=0.334  Sum_probs=227.3

Q ss_pred             cccccccCCCCCcccccccCCCC--CCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPG--YTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~--~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~  160 (394)
                      ++..+++++.|+++++|+.++..  +.            ....||...|..++ |+|++.+++++..|.    +|+|||+
T Consensus       170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~------------~~l~~h~~~v~~~~-fs~d~~~l~s~s~D~----tiriwd~  232 (456)
T KOG0266|consen  170 DGRALAAASSDGLIRIWKLEGIKSNLL------------RELSGHTRGVSDVA-FSPDGSYLLSGSDDK----TLRIWDL  232 (456)
T ss_pred             CCCeEEEccCCCcEEEeecccccchhh------------ccccccccceeeeE-ECCCCcEEEEecCCc----eEEEeec
Confidence            77789999999999999997665  22            13479999999999 999999888776666    9999999


Q ss_pred             CCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       161 ~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      ......++++++|...|++++|+|+++++++|+.|++  |||++++++..                     ...+|...|
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---------------------~l~~hs~~i  291 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---------------------KLKGHSDGI  291 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---------------------eeeccCCce
Confidence            6666899999999999999999999999999999999  69999988764                     223778888


Q ss_pred             EEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCC--cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          239 TCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDA--PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~--v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      ++++|+  +++|++++.|+.|+|||+.+++  ++..+..+...  ++++.|+  +.+|+++..|+.+++||++....+..
T Consensus       292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence            888887  7899999999999999999998  66777776655  8999998  88999999999999999999999888


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--CcEEEEEECCCC-EEEEEe--CCCeEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--HEVRVIEIGPDK-LFFTGD--GAGMLG  385 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~sp~~-~l~tgs--~Dg~I~  385 (394)
                      +..|.... ...+...+++.+. ++++|+.|+.|++||+.++..+..+...  ..+..++++|.. ++++++  .|+.|+
T Consensus       372 ~~~~~~~~-~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~  449 (456)
T KOG0266|consen  372 YTGHSNLV-RCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR  449 (456)
T ss_pred             ecccCCcc-eeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence            88887652 1222334467787 9999999999999999998777766653  668999999998 888888  799999


Q ss_pred             EEeCC
Q 016134          386 VWKLL  390 (394)
Q Consensus       386 vWd~~  390 (394)
                      +|..+
T Consensus       450 ~w~~~  454 (456)
T KOG0266|consen  450 LWKYD  454 (456)
T ss_pred             EecCC
Confidence            99865

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=4.8e-29  Score=229.74  Aligned_cols=300  Identities=15%  Similarity=0.177  Sum_probs=240.6

Q ss_pred             CCCCCcccc-cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCC
Q 016134           72 KKSPPSYNR-LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGD  150 (394)
Q Consensus        72 ~~~~~~~~~-~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~  150 (394)
                      ..++..-.. ..|.+.-+-.-..+.+.+.+++++....            ....|...++... ++|.+.|+|++-.+| 
T Consensus        16 t~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~------------iYtEH~~~vtVAk-ySPsG~yiASGD~sG-   81 (603)
T KOG0318|consen   16 TERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVD------------IYTEHAHQVTVAK-YSPSGFYIASGDVSG-   81 (603)
T ss_pred             ccCCcceEeccCCCCCeEEEeCCCEEEEEECCCcccee------------eeccccceeEEEE-eCCCceEEeecCCcC-
Confidence            344444433 3344444445667888899999776321            2334444555455 999999999877777 


Q ss_pred             CCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEE-EecCCCCcEEEEEEcCC
Q 016134          151 ECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEF-SLDGPVGEVYSMVVANE  224 (394)
Q Consensus       151 ~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~-~~~~~~~~v~~l~~~~~  224 (394)
                         .|||||... ...+..+++.-.++|.+|+|+.|+++|+..++.+.    ++-++++..+ .+.+|...|.++.|.|.
T Consensus        82 ---~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps  158 (603)
T KOG0318|consen   82 ---KVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS  158 (603)
T ss_pred             ---cEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence               999999965 55667788888999999999999999998887665    3444466655 78899999999999887


Q ss_pred             ---EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc---CCCCCc
Q 016134          225 ---MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN---DHTDAP  278 (394)
Q Consensus       225 ---~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~h~~~v  278 (394)
                         ++++++.|                  .|..-|.|+.|+  ++++++++.||+|.|||-.+++.+..|.   +|.+.|
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI  238 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI  238 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence               78888887                  699999999998  7899999999999999999999999998   899999


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      .++.|+  +..|++++.|.+++|||+.+.+.++++..... ..-+.+-+.|.  .. .|++-+.+|+|.+++......+.
T Consensus       239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWq--kd-~lItVSl~G~in~ln~~d~~~~~  314 (603)
T KOG0318|consen  239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQ--KD-HLITVSLSGTINYLNPSDPSVLK  314 (603)
T ss_pred             EEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEEe--CC-eEEEEEcCcEEEEecccCCChhh
Confidence            999999  78999999999999999999988887765443 22333333344  33 68889999999999999998766


Q ss_pred             EEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          357 RIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       357 ~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+.+ ...|+++..+|++ +|++|+.||.|.-|++.+.
T Consensus       315 ~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  315 VISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             eecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence            6665 6789999999999 9999999999999998754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=6.2e-29  Score=214.87  Aligned_cols=269  Identities=19%  Similarity=0.249  Sum_probs=229.3

Q ss_pred             CccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC
Q 016134          115 ASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR  194 (394)
Q Consensus       115 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~  194 (394)
                      -..+.....||+..|.... |.|++.+++++..|-    .|.+|++....+-...+++|+++|..+.|.+|+..|++++.
T Consensus        36 l~ap~m~l~gh~geI~~~~-F~P~gs~~aSgG~Dr----~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIK-FHPDGSCFASGGSDR----AIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             ccchhhhcCCCcceEEEEE-ECCCCCeEeecCCcc----eEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC
Confidence            3444567889999999999 999999998766655    99999986666778889999999999999999999999999


Q ss_pred             CCc--eeecCCCcEE-EecCCCCcEEEEEEcCC---EEEEEecC-----------------CCCCCEEEEEec--CCeEE
Q 016134          195 DGT--AWNIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQD-----------------GHTRPVTCLAVG--RSRLC  249 (394)
Q Consensus       195 Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~  249 (394)
                      |.+  .||+++++.. +...|..-|..+....-   ++.+++.|                 ...-+++++.|.  ...++
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence            999  4999999987 67788888888874332   66666666                 224578888997  68899


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC----CceeeEeecccCCcceEEE
Q 016134          250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG----RGNLEAAYTHKEDNGVLAL  323 (394)
Q Consensus       250 sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~  323 (394)
                      +|+-|+.|++||++.....+.+.+|.+.|+.+..+  |.++++-+.|.++++||++.    ..++..+..+........+
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL  270 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL  270 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence            99999999999999999999999999999999988  89999999999999999984    3456667776655555556


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      .+.|+|++. .+..|+.|..+++||......+..+++ ...|++++|+|.. .|.+++.|.+|.+=++
T Consensus       271 ~cswsp~~~-~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  271 KCSWSPNGT-KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             eeeccCCCC-ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence            667899999 889999999999999999888888877 6779999999999 9999999999987544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.9e-30  Score=227.44  Aligned_cols=244  Identities=21%  Similarity=0.291  Sum_probs=208.5

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..|+...|+.+- +.|....+++++.++    +|++||..++ ++...|+||++.|.+|+|+..|++|++++.|-.  +|
T Consensus       104 l~g~r~~vt~v~-~hp~~~~v~~as~d~----tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  104 LAGHRSSVTRVI-FHPSEALVVSASEDA----TIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             hhccccceeeee-eccCceEEEEecCCc----eEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            447778888888 889888887766665    9999999998 779999999999999999999999999999986  69


Q ss_pred             ecCCC-cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Q 016134          200 NIESS-AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       200 d~~~~-~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      |.++. ++.+                     +.-+|...|.++.|-  ++++++++.|.+|+.|++.++.++++|.+|..
T Consensus       178 d~~~~~~c~k---------------------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e  236 (406)
T KOG0295|consen  178 DFDTFFRCIK---------------------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE  236 (406)
T ss_pred             eHHHHHHHHH---------------------HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH
Confidence            98763 2221                     111677777787775  79999999999999999999999999999999


Q ss_pred             CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee-ECC---------CCCcEEEEEeCCCeE
Q 016134          277 APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL-NDP---------DGKPVLICACNDNTV  344 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~s~---------~g~~~l~sgs~dg~I  344 (394)
                      .|..+...  |.++++|+.|.+|++|-+.+.++...+..|+.+..++++... +.|         ++..++++++.|++|
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            99999988  789999999999999999998888888888877776665421 011         223499999999999


Q ss_pred             EEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          345 HLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       345 ~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++||+.++.++.++.. ...|..++|+|.| +|+++.+|+++++||++..
T Consensus       317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence            9999999999999887 7789999999999 9999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.8e-28  Score=256.15  Aligned_cols=275  Identities=16%  Similarity=0.218  Sum_probs=207.1

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc-ccccCCCeecCCCCC
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECR  153 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~  153 (394)
                      ..+|++  ++..+++|+.|++|+|||.+..........     .+.....+...+..+. |++. +.++++++.+|    
T Consensus       488 ~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~v~~l~-~~~~~~~~las~~~Dg----  555 (793)
T PLN00181        488 AIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIH-----YPVVELASRSKLSGIC-WNSYIKSQVASSNFEG----  555 (793)
T ss_pred             EEEECC--CCCEEEEEeCCCEEEEEECCcccccccccc-----cceEEecccCceeeEE-eccCCCCEEEEEeCCC----
Confidence            345555  777899999999999999864321110000     0000111233566777 7663 56777666555    


Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      +|++||+.++ +.+..+.+|.+.|++++|+| ++.+|+||+.|++  +||+.++..+...                    
T Consensus       556 ~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------  614 (793)
T PLN00181        556 VVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI--------------------  614 (793)
T ss_pred             eEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------
Confidence            9999999887 78889999999999999997 7899999999999  6999887765321                    


Q ss_pred             cCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCC
Q 016134          231 QDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       231 ~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                        .+...|.++.|.   +.+|++|+.|+.|++||+++.+ ++..+.+|...|.++.|. +.+|++++.|++|++||++..
T Consensus       615 --~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        615 --KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             --ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence              122457777773   6789999999999999998765 577888999999999997 789999999999999999743


Q ss_pred             ------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--------------cCCcEE
Q 016134          306 ------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--------------SKHEVR  365 (394)
Q Consensus       306 ------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------------~~~~v~  365 (394)
                            ..+..+..|......+    .+++++. +|++|+.|+.|++|+......+..+.              +...|.
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v----~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~  767 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFV----GLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS  767 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEE----EEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence                  3455555555433333    3588888 99999999999999987654332211              134599


Q ss_pred             EEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          366 VIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       366 ~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      +++|+|++ +|++|+.||.|+||++
T Consensus       768 ~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        768 SVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999999 9999999999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=228.62  Aligned_cols=243  Identities=20%  Similarity=0.296  Sum_probs=202.1

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      |..+|+||+-|+||+|||.++-.+..            ...||...|-++. +  |...+    ++|+.|.+|+|||+++
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~c~~------------~L~GHtGSVLCLq-y--d~rvi----isGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLECLK------------ILTGHTGSVLCLQ-Y--DERVI----VSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cchhhhcccccCceEEeccccHHHHH------------hhhcCCCcEEeee-c--cceEE----EecCCCceEEEEeccC
Confidence            77799999999999999999766532            5778888888776 3  23344    4566666999999999


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCCEEEEEecC----
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQD----  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~~----  232 (394)
                      + +++.++.+|...|..+.|+  ..+++|++.|.+  |||+......    .+.+|...|+.+.|...++++++.|    
T Consensus       267 g-e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTik  343 (499)
T KOG0281|consen  267 G-EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK  343 (499)
T ss_pred             C-chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEE
Confidence            8 9999999999999999996  569999999999  6999887654    3578999999999999999988887    


Q ss_pred             --------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEE
Q 016134          233 --------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIK  298 (394)
Q Consensus       233 --------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~  298 (394)
                                    +|...|-|+.+.+.++++|+.|.+|++||+..|.+++.+++|..-|.++.|+.+.+++|+.||+|+
T Consensus       344 vW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkik  423 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK  423 (499)
T ss_pred             EEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEE
Confidence                          899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcee---------eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          299 VWFATGRGNL---------EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       299 vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      +||+......         ..+..|..  .+.  ...|  |.. .+++++.|.+|-|||..++..
T Consensus       424 vWdl~aaldpra~~~~~Cl~~lv~hsg--RVF--rLQF--D~f-qIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  424 VWDLQAALDPRAPASTLCLRTLVEHSG--RVF--RLQF--DEF-QIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             EEecccccCCcccccchHHHhhhhccc--eeE--EEee--cce-EEEeccCCCeEEEEEcCCCCc
Confidence            9999765432         12222222  222  2234  333 688889999999999987643

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-29  Score=208.95  Aligned_cols=237  Identities=19%  Similarity=0.264  Sum_probs=198.7

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..+++.+|+.+. ++.+++|..+..    .|++|++|++..+ .+++++.+|..+|.+++.+.|...|++|+.|+.  +|
T Consensus        13 l~~~qgaV~avr-yN~dGnY~ltcG----sdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   13 LDCAQGAVRAVR-YNVDGNYCLTCG----SDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ecccccceEEEE-EccCCCEEEEcC----CCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            446677899998 999999976554    4559999999888 899999999999999999999999999999998  69


Q ss_pred             ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC--CceeEEEcCCC
Q 016134          200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT--LEPVMTLNDHT  275 (394)
Q Consensus       200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~--~~~~~~~~~h~  275 (394)
                      |+++|+..+.                     +.+|...|+.++|+  ...+++|+.|.++++||.++  .++++.+....
T Consensus        87 DV~TGkv~Rr---------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   87 DVNTGKVDRR---------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             EcccCeeeee---------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence            9999998742                     22677778888887  46799999999999999876  56899998889


Q ss_pred             CCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       276 ~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      +.|.++...+..|++|+.||++|.||++.+........++  +..+    +|+++++ .++.++.|++|++.|-.+++++
T Consensus       146 D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~p--it~v----s~s~d~n-c~La~~l~stlrLlDk~tGklL  218 (307)
T KOG0316|consen  146 DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHP--ITSV----SFSKDGN-CSLASSLDSTLRLLDKETGKLL  218 (307)
T ss_pred             CceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCc--ceeE----EecCCCC-EEEEeeccceeeecccchhHHH
Confidence            9999999999999999999999999999987766655543  3333    3699999 7888999999999999999998


Q ss_pred             EEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          356 GRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.+   ...-...+++... .+++|++||.|.+||+..+
T Consensus       219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            88776   1223334455555 9999999999999998765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.3e-28  Score=238.92  Aligned_cols=238  Identities=26%  Similarity=0.370  Sum_probs=198.9

Q ss_pred             ccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134          126 KSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE  202 (394)
Q Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~  202 (394)
                      ...|.++. +++++.++++++.++    .+++|+..+.. ..++.+.+|...|.+++|+|++++|++++.|++  |||++
T Consensus       159 ~~sv~~~~-fs~~g~~l~~~~~~~----~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  159 CPSVTCVD-FSPDGRALAAASSDG----LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cCceEEEE-EcCCCCeEEEccCCC----cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            57888888 999999999888877    99999996552 277888999999999999999999999999999  69994


Q ss_pred             -CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcE
Q 016134          203 -SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM  279 (394)
Q Consensus       203 -~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~  279 (394)
                       .+..+.                     ...+|...|++++|+  ++++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus       234 ~~~~~~~---------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  234 DDGRNLK---------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             CCCeEEE---------------------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence             434442                     223788888888887  68999999999999999999999999999999999


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEeCCCc--eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          280 SLLCW--DQFLLSCSLDHTIKVWFATGRG--NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      +++|.  +.+|++++.|+.|++||+.++.  +...+..+....  ....+.|+|+++ +|+++..|+.+++||+..+..+
T Consensus       293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA--PVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC--ceeEEEECCCCc-EEEEecCCCeEEEEEccCCcce
Confidence            99999  7899999999999999999887  345555544432  333456899999 8999999999999999998887


Q ss_pred             EEEec-CC---cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          356 GRIFS-KH---EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ~~~~~-~~---~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.. ..   .+.+...++.+ ++++|+.|+.|.+|++.+.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            77665 22   34444556677 9999999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=221.29  Aligned_cols=262  Identities=14%  Similarity=0.154  Sum_probs=219.2

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC--CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--  197 (394)
                      ...|...|--+. |++.|.|+|+++.+.    +..||++.  ...++..++.+|..+|..|.|+||.++|++|+.|..  
T Consensus       220 l~~htdEVWfl~-FS~nGkyLAsaSkD~----Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  220 LQDHTDEVWFLQ-FSHNGKYLASASKDS----TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             HhhCCCcEEEEE-EcCCCeeEeeccCCc----eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            346677888888 999999999887666    88999873  446789999999999999999999999999999988  


Q ss_pred             eeecCCCcEEEecCC--CCcEEEEEEcCC--EEEEEecCC------------------CCCCEEEEEec--CCeEEEEeC
Q 016134          198 AWNIESSAEFSLDGP--VGEVYSMVVANE--MLFAGAQDG------------------HTRPVTCLAVG--RSRLCSGSM  253 (394)
Q Consensus       198 vWd~~~~~~~~~~~~--~~~v~~l~~~~~--~l~~~~~~~------------------h~~~V~~l~~~--~~~l~sgs~  253 (394)
                      +||+.++.......+  ...+.+.+|.||  .+++|+.|.                  ....|.+++..  |.++++...
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            699999998865444  478999999999  888888771                  23458888875  888999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134          254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG  331 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  331 (394)
                      |..|++|+.++......+. ...+|+++..+  ++++++--.+..+++||+.....++.+.+|+....++.-  ||--..
T Consensus       375 d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS--CFgg~~  451 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS--CFGGGN  451 (519)
T ss_pred             ccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe--ccCCCC
Confidence            9999999998766665444 34689999988  678888888999999999988888888888876555543  354434


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          332 KPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       332 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..++++|++|+.|+||+..+++++..+.+ ...|++++|+|..  ++|+++.||+|+||....
T Consensus       452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            34999999999999999999999999887 6679999999988  999999999999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=235.09  Aligned_cols=285  Identities=20%  Similarity=0.283  Sum_probs=243.2

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ..++.+.-..|+.+.++|.++.....            ...|....|....++.|...++|.+..++    .+|+++..+
T Consensus       292 ~~~~~l~vtaeQnl~l~d~~~l~i~k------------~ivG~ndEI~Dm~~lG~e~~~laVATNs~----~lr~y~~~~  355 (775)
T KOG0319|consen  292 SMSQLLLVTAEQNLFLYDEDELTIVK------------QIVGYNDEILDMKFLGPEESHLAVATNSP----ELRLYTLPT  355 (775)
T ss_pred             ccCceEEEEccceEEEEEccccEEeh------------hhcCCchhheeeeecCCccceEEEEeCCC----ceEEEecCC
Confidence            33444556789999999988777543            34566668888888899999999888888    899998877


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-----EecCCCCcEEEEEEcCC---EEEEEecC
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-----SLDGPVGEVYSMVVANE---MLFAGAQD  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-----~~~~~~~~v~~l~~~~~---~l~~~~~~  232 (394)
                      . .+ +.+.||+..|.++....+|.+|+||+.|.+  +|.++.+...     ...+|...|.+++++..   ++++++.|
T Consensus       356 ~-~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  356 S-YC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             C-ce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence            5 33 388999999999997778899999999999  6988655443     34789999999999754   88888877


Q ss_pred             ---------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134          233 ---------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       233 ---------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~  283 (394)
                                                 .|...|+|++++  ..+++|||.|++.+||+++..+.+.+|.+|...|.++.|
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence                                       699999999997  578999999999999999999999999999999999999


Q ss_pred             c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134          284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-  360 (394)
Q Consensus       284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-  360 (394)
                      +  ++.++|+|.|.+|+||.+.+..+++++.+|...+-    .+.|-.+++ .|++++.||.|+||++.+.+++..+.. 
T Consensus       514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl----ra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL----RASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             ccccceeEeccCCceEEEEEeccceeeeeecCccceeE----eeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            9  67999999999999999999999999998875433    334566787 899999999999999999999988875 


Q ss_pred             CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .+.|++++.++.. +++||+.||.|.+|.=.
T Consensus       589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  589 NDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             cceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            7889999999998 99999999999999633

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=3.2e-28  Score=221.66  Aligned_cols=259  Identities=22%  Similarity=0.292  Sum_probs=213.1

Q ss_pred             Cccceeeecccccccc-ccCCCeecCCCCCeEEEEEcCCC-ceE--EEEec------c----cCCCeEEEEecCCCCEEE
Q 016134          125 DKSTSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGEG-LTM--LAKLE------G----HEKAVSGIALPLRSDKLF  190 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~~-~~~--~~~l~------~----h~~~V~~l~~s~~~~~l~  190 (394)
                      |+..|...+ |+|... .++    +|+.+.+.++|++... ...  +..|+      +    -...|++|+|+.+|..||
T Consensus       177 ~~~~V~~~~-WnP~~~~lla----sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  177 HESEVFICA-WNPLRDGLLA----SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             CCCceEEEe-cCchhhhhhh----ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            667777777 998665 444    4455558999998641 111  11111      1    246899999999999999


Q ss_pred             EEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec-CCe
Q 016134          191 SGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG-RSR  247 (394)
Q Consensus       191 sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~-~~~  247 (394)
                      +|+.||.  ||+........+..|.++|.++.|+..  +|++++.|                  -|..+-..+.|- .+.
T Consensus       252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~  331 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE  331 (524)
T ss_pred             EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence            9999999  799988888889999999999999987  78888877                  244444556665 678


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEe
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGG  325 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  325 (394)
                      |++++.|+.|+|+.+....++.++.+|.++|.++.|+  +.+|++||.|++++||..........+..|...+..+.   
T Consensus       332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~---  408 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK---  408 (524)
T ss_pred             EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe---
Confidence            9999999999999999999999999999999999999  89999999999999999988888888888875543333   


Q ss_pred             eECCCC--------CcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          326 LNDPDG--------KPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       326 ~~s~~g--------~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                       |+|.|        ...|++++.|++|++||+..+.++..+ .|..+|.+++|+|++ ++|+|+.||.|.+|++++.
T Consensus       409 -wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  409 -WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             -ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence             34433        337999999999999999999999988 568899999999999 9999999999999998764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=208.02  Aligned_cols=259  Identities=20%  Similarity=0.267  Sum_probs=216.6

Q ss_pred             cCCCCccceeeecccc---ccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKN---VCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~---~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      .-.||.+.|-.++ ++   |+++++.++|-+|...    +-+-+++ .-+.+|.||+++|+...++.+..+-++++.|-+
T Consensus         9 ~c~ghtrpvvdl~-~s~itp~g~flisa~kd~~pm----lr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadft   82 (334)
T KOG0278|consen    9 TCHGHTRPVVDLA-FSPITPDGYFLISASKDGKPM----LRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFT   82 (334)
T ss_pred             EEcCCCcceeEEe-ccCCCCCceEEEEeccCCCch----hccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccch
Confidence            3458889999988 77   5899999999888542    2222344 678999999999999999999999999999987


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEec--CCeEEEEe
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs  252 (394)
                        |||.-++..+....|.--|.+++|+.|  .|++|+.+                   +|++.|..+.|.  .+.|++.+
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence              899999999877788889999999998  88898877                   899999999995  67788889


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134          253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG  331 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  331 (394)
                      .|++||+||.++++.++++. ...+|+++.++ ...+++-...+.|++||..+-+.++..... ..+...+    .+|+.
T Consensus       163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SAS----L~P~k  236 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESAS----LHPKK  236 (334)
T ss_pred             cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-ccccccc----ccCCC
Confidence            99999999999999999997 56789999998 556667777889999999887666554432 1223333    48888


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEEE-e-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          332 KPVLICACNDNTVHLYELPSFMERGRI-F-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       332 ~~~l~sgs~dg~I~iwd~~~~~~~~~~-~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      . ++++|++|..++.||..+++.+..+ . +.++|.|+.|+|+| ..++||+||+|+||.+...
T Consensus       237 ~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  237 E-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             c-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            6 9999999999999999999988875 2 36789999999999 9999999999999987654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=7.7e-28  Score=235.43  Aligned_cols=249  Identities=29%  Similarity=0.458  Sum_probs=218.7

Q ss_pred             ccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCC
Q 016134          137 VCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPV  213 (394)
Q Consensus       137 ~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~  213 (394)
                      .|.++.-..+..++.+.+|++||..++..+...+.||.+.|.++++...+.+|++|+.|.+  |||..++++. .+.+|.
T Consensus       212 ~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~  291 (537)
T KOG0274|consen  212 LCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT  291 (537)
T ss_pred             hhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC
Confidence            3444555567788888899999999996666669999999999999877899999999999  7999999998 678899


Q ss_pred             CcEEEEEEcCCEEEEEecC------------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134          214 GEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       214 ~~v~~l~~~~~~l~~~~~~------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      ..|.++...+..++.|+.|                  +|..+|.++..++.++++|+.|++|+|||+.++++++++.+|.
T Consensus       292 stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~  371 (537)
T KOG0274|consen  292 SSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT  371 (537)
T ss_pred             ceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence            9999999988888887777                  6999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcC-CEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          276 DAPMSLLCWD-QFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       276 ~~v~~l~~~~-~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      ..|+++.+.+ +.+++|+.|++|++||+++. +++..+..|..-...+      ...++ +|++++.|++|++||..+++
T Consensus       372 ~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l------~~~~~-~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  372 GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL------LLRDN-FLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc------ccccc-eeEeccccccEEEeecccCc
Confidence            9999999998 99999999999999999998 8888887776544322      23455 89999999999999999999


Q ss_pred             eeEEEecC--CcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          354 ERGRIFSK--HEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       354 ~~~~~~~~--~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .+..+...  ..|.++++. +..+++++.|+.+++||+.+..
T Consensus       445 ~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  445 CLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             eeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence            99988873  678888887 3489999999999999998753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2e-27  Score=227.26  Aligned_cols=256  Identities=20%  Similarity=0.353  Sum_probs=212.5

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      ..|..+. ++.-|.|+|-+|.-   -+.+-||+...+ ..+...++|...|++++++|||++||||+.||.  |||..++
T Consensus       308 ~~I~t~~-~N~tGDWiA~g~~k---lgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg  382 (893)
T KOG0291|consen  308 QKILTVS-FNSTGDWIAFGCSK---LGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG  382 (893)
T ss_pred             ceeeEEE-ecccCCEEEEcCCc---cceEEEEEeecc-ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence            3566777 99999999987754   458999999877 677788999999999999999999999999999  6999999


Q ss_pred             cEE-EecCCCCcEEEEEEcCC--EEEEEecCC-------------------CCCCEEEEEec--CCeEEEEeCCC-eEEE
Q 016134          205 AEF-SLDGPVGEVYSMVVANE--MLFAGAQDG-------------------HTRPVTCLAVG--RSRLCSGSMDN-TIRV  259 (394)
Q Consensus       205 ~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~~-------------------h~~~V~~l~~~--~~~l~sgs~Dg-~V~i  259 (394)
                      -|+ ++..|...|..+.|+..  .+++.+.||                   ......|++.+  |.+++.|+.|. .|.|
T Consensus       383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV  462 (893)
T ss_pred             eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence            987 88999999999999876  888888882                   23345567776  78888888876 7999


Q ss_pred             EeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134          260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       260 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                      |++++|+.+-.+.+|.++|.+++|+  ++.|+++|.|.+||+||+-............    ..++.+.|.|+|+ -|++
T Consensus       463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~----sdvl~vsfrPdG~-elaV  537 (893)
T KOG0291|consen  463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR----SDVLAVSFRPDGK-ELAV  537 (893)
T ss_pred             EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec----cceeEEEEcCCCC-eEEE
Confidence            9999999999999999999999988  8999999999999999987643222222222    2334445799999 8999


Q ss_pred             EeCCCeEEEEECCCCceeEEEec---------------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          338 ACNDNTVHLYELPSFMERGRIFS---------------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       338 gs~dg~I~iwd~~~~~~~~~~~~---------------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +..||.|.+||...+.....+..                     ....+.+++++|| .|++|+....|++|++.++
T Consensus       538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence            99999999999987765544321                     2458999999999 9999999999999998764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.4e-28  Score=236.88  Aligned_cols=266  Identities=20%  Similarity=0.299  Sum_probs=212.1

Q ss_pred             cccccccccCCCCCcccccccCCCCCCC----------CCC---------CCCCccccccCCCCccceeeeccccccccc
Q 016134           81 LKNNLWVSSGSEDRIPHVRNRENPGYTG----------PKN---------SSSASSTVSDESGDKSTSKKTTLKNVCCHW  141 (394)
Q Consensus        81 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~----------~~~---------s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~  141 (394)
                      ..+++.+|-|=.|..|++|.+...++..          .++         -..+........||.+.|-... |+|+..|
T Consensus       387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s-FsPd~rf  465 (707)
T KOG0263|consen  387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS-FSPDRRF  465 (707)
T ss_pred             cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee-ecccccc
Confidence            3377777777779999999998533110          000         0011111223669999999999 9999999


Q ss_pred             cCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEE
Q 016134          142 LLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSM  219 (394)
Q Consensus       142 ~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l  219 (394)
                      |.+.+-|+    +||+|.+.+. ..+..++||..+|.++.|+|.|-++||+|.|++  +|..+....+++          
T Consensus       466 LlScSED~----svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi----------  530 (707)
T KOG0263|consen  466 LLSCSEDS----SVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI----------  530 (707)
T ss_pred             eeeccCCc----ceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh----------
Confidence            98665555    9999999886 888899999999999999999999999999999  899887665542          


Q ss_pred             EEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          220 VVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       220 ~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                                 .-+|.+.|.|+.|+  .+++++||.|.+||+||..++..++.|.+|.++|.+++|+  |.+|++|+.|+
T Consensus       531 -----------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  531 -----------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             -----------hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence                       11788888888887  5789999999999999999999999999999999999999  99999999999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce---------------------
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME---------------------  354 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~---------------------  354 (394)
                      .|++||+.++..+..+..|...+  .++  .|+.+|. +||+|+.|++|++||+..-..                     
T Consensus       600 ~I~iWDl~~~~~v~~l~~Ht~ti--~Sl--sFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGHTGTI--YSL--SFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNAS  674 (707)
T ss_pred             cEEEEEcCCCcchhhhhcccCce--eEE--EEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCC
Confidence            99999999999999999885433  333  3689999 999999999999999865322                     


Q ss_pred             ---eEEEec-CCcEEEEEECCCC-EEEEE
Q 016134          355 ---RGRIFS-KHEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       355 ---~~~~~~-~~~v~~l~~sp~~-~l~tg  378 (394)
                         +..+.. ..+|..+.|...+ .|+.|
T Consensus       675 ~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  675 SLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cceeeeeeecCceEEEEEEeccceeEEec
Confidence               222222 4468888888777 44444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=7.3e-29  Score=222.57  Aligned_cols=274  Identities=17%  Similarity=0.181  Sum_probs=224.4

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC  152 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~  152 (394)
                      -+.+.|-+  .+..+++|+.|+.|++||+....+..+.          ...|....+.++. +.+.+.++.++..++   
T Consensus       178 v~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~~----------tLaGs~g~it~~d-~d~~~~~~iAas~d~---  241 (459)
T KOG0288|consen  178 VHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELIS----------TLAGSLGNITSID-FDSDNKHVIAASNDK---  241 (459)
T ss_pred             cceeEEcc--Ccchhhhcchhhhhhhhhcccchhhhhh----------hhhccCCCcceee-ecCCCceEEeecCCC---
Confidence            45556666  7789999999999999999988855444          5778888899999 777777777676666   


Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                       .+++|++... +...+|.||++.|+++.|......+++|+.|.+  +||+....+....-.                  
T Consensus       242 -~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~------------------  301 (459)
T KOG0288|consen  242 -NLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP------------------  301 (459)
T ss_pred             -ceeeeeccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc------------------
Confidence             8999999887 889999999999999999887777999999999  599999877643222                  


Q ss_pred             cCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee
Q 016134          231 QDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       231 ~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                          ...+.+|...+..+++|..|++||.||+++..+......+. .|+++..+  +..|++++.|.++.+.|+++.+..
T Consensus       302 ----~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~  376 (459)
T KOG0288|consen  302 ----GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR  376 (459)
T ss_pred             ----cccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEE
Confidence                22344445556779999999999999999999999988764 89999887  778999999999999999988777


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CC-cEEEEEECCCC-EEEEEeCCCeE
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KH-EVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~-~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      ..+.........-...++|+|++. |+++|+.||.|+||++.++++...+..  .. .|++++|+|.| .|++++.++.+
T Consensus       377 ~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  377 QTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             EEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence            666543322222223445899999 999999999999999999988887766  22 59999999999 99999999999


Q ss_pred             EEEe
Q 016134          385 GVWK  388 (394)
Q Consensus       385 ~vWd  388 (394)
                      .+|.
T Consensus       456 ~lW~  459 (459)
T KOG0288|consen  456 TLWT  459 (459)
T ss_pred             EecC
Confidence            9993

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4.4e-27  Score=224.86  Aligned_cols=300  Identities=17%  Similarity=0.241  Sum_probs=236.0

Q ss_pred             CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC
Q 016134           72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE  151 (394)
Q Consensus        72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~  151 (394)
                      ......|+.  |+-.+++||-|.++|||.++...-...          .-..||+..|-... |..+..-+.+.+-    
T Consensus       147 di~si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~----------~~l~gHkd~Vvacf-F~~~~~~l~tvsk----  209 (893)
T KOG0291|consen  147 DITSIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFT----------YALNGHKDYVVACF-FGANSLDLYTVSK----  209 (893)
T ss_pred             ceeEEEecc--CCceEEeccccceEEEEEeccccccce----------EeccCCCcceEEEE-eccCcceEEEEec----
Confidence            345667777  999999999999999999985442111          13567776666554 6555555554444    


Q ss_pred             CCeEEEEEcCC-----------------------Cce-----E-----EEEecccCCCeEEEEecCCCCEEEEEeCCCc-
Q 016134          152 CRFLHSWFCGE-----------------------GLT-----M-----LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-  197 (394)
Q Consensus       152 ~~~i~iWd~~~-----------------------~~~-----~-----~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-  197 (394)
                      ||.|.+|....                       +.+     .     ..-+......|++.+|++..+.|++|=..|. 
T Consensus       210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f  289 (893)
T KOG0291|consen  210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF  289 (893)
T ss_pred             CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence            44999998750                       101     0     1111223478999999999999999999998 


Q ss_pred             -eeecCCCcEE-EecCCCCcEEEEEEc--CCEEEEEecC-------------------CCCCCEEEEEec--CCeEEEEe
Q 016134          198 -AWNIESSAEF-SLDGPVGEVYSMVVA--NEMLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       198 -vWd~~~~~~~-~~~~~~~~v~~l~~~--~~~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs  252 (394)
                       ++++..-.++ .+.-...+|..++|+  .+.++.|+..                   +|...+++++++  ++++++|+
T Consensus       290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence             6888887776 344445678888888  5577777655                   899999999998  67999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC
Q 016134          253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .||+|+|||..++-|+.+|..|+..|+.+.|.  ++.+++.+.||+|+.||+...++.+++....   .....+++.+|.
T Consensus       370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~---p~QfscvavD~s  446 (893)
T KOG0291|consen  370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE---PIQFSCVAVDPS  446 (893)
T ss_pred             CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC---ceeeeEEEEcCC
Confidence            99999999999999999999999999999999  8999999999999999998887777665432   333334445888


Q ss_pred             CCcEEEEEeCCC-eEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          331 GKPVLICACNDN-TVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       331 g~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |. +++.|+.|. .|++|++++++++-.+.+ +++|.+++|+|++ .|+++|.|.+|++||+-..
T Consensus       447 Ge-lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  447 GE-LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             CC-EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            98 777777765 599999999999988876 8899999999999 9999999999999998654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=1.2e-26  Score=210.80  Aligned_cols=256  Identities=27%  Similarity=0.371  Sum_probs=212.7

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..+|...|.++. +++++.+++++..+|    .|++|+..++ +....+..|...+..+.|.+++++|++++.|+.  +|
T Consensus         5 ~~~h~~~i~~~~-~~~~~~~l~~~~~~g----~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200           5 LKGHTGGVTCVA-FSPDGKLLATGSGDG----TIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             hcccCCCEEEEE-EcCCCCEEEEeecCc----EEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            347888999999 999988888766554    9999999876 577888899999999999999999999999998  69


Q ss_pred             ecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEecC--CeEEEEeCCCe
Q 016134          200 NIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNT  256 (394)
Q Consensus       200 d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~~--~~l~sgs~Dg~  256 (394)
                      |+++++.. .+..+...+.++.|.++  .++++..+                  .|...|.++.|++  .++++++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            99986554 56677789999999986  55555523                  4778899999984  66777777999


Q ss_pred             EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134          257 IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       257 V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      |++||+++++++..+..|...+.++.+.  ++.+++++.|+.|++||++..+.+..+..+....  ..  ..++|++. +
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~--~~~~~~~~-~  233 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV--NS--VAFSPDGY-L  233 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCce--EE--EEEcCCCc-E
Confidence            9999999999999999999999999998  4589999999999999998877766665554332  22  34688866 8


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          335 LICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      +++++.|+.|++||+.+++....+.. ...|.+++|+|++ +|++++.|+.|++|+
T Consensus       234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            88888899999999998877776654 5579999999998 999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.3e-28  Score=201.13  Aligned_cols=273  Identities=17%  Similarity=0.183  Sum_probs=217.8

Q ss_pred             CCCCcccccc-cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC
Q 016134           73 KSPPSYNRLK-NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE  151 (394)
Q Consensus        73 ~~~~~~~~~~-~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~  151 (394)
                      +++....+|. ++.+.++.+.||++|+||...+.+..            ...||...|..++ .+.+..-++    +++.
T Consensus        17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik------------tYsghG~EVlD~~-~s~Dnskf~----s~Gg   79 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK------------TYSGHGHEVLDAA-LSSDNSKFA----SCGG   79 (307)
T ss_pred             ccceEEEEEccCCCEEEEcCCCceEEeecccccceee------------eecCCCceeeecc-ccccccccc----cCCC
Confidence            3444433322 88899999999999999999988764            5678888888777 554444444    4566


Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAG  229 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~  229 (394)
                      |+.|.+||++++ +.++.+.+|.+.|+.++|+.+...+++|+.|.+  +||-++.....+.                   
T Consensus        80 Dk~v~vwDV~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ-------------------  139 (307)
T KOG0316|consen   80 DKAVQVWDVNTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ-------------------  139 (307)
T ss_pred             CceEEEEEcccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc-------------------
Confidence            779999999999 999999999999999999999999999999999  5998876543221                   


Q ss_pred             ecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134          230 AQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       230 ~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      ..+.....|.++...+..|+.|+.||++|.||++.++.....-+|  +|+++.|+  ++..+.++.|++|++.|-.+++.
T Consensus       140 ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  140 ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL  217 (307)
T ss_pred             hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence            112446788889999999999999999999999999887766555  89999998  88999999999999999999999


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCc--EEEEEECCCC-EEEEEeCCCeE
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE--VRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      +....+|......  +..+++.... .+++|++||.|++||+.....+..+.....  |..++++|.- .|+++.. +.+
T Consensus       218 L~sYkGhkn~eyk--ldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~  293 (307)
T KOG0316|consen  218 LKSYKGHKNMEYK--LDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGD  293 (307)
T ss_pred             HHHhcccccceee--eeeeecccce-eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cce
Confidence            9998888754433  3334555555 899999999999999999998888877433  7899999987 5656544 345


Q ss_pred             EEEe
Q 016134          385 GVWK  388 (394)
Q Consensus       385 ~vWd  388 (394)
                      .+|.
T Consensus       294 ~~~~  297 (307)
T KOG0316|consen  294 LFWY  297 (307)
T ss_pred             ecee
Confidence            5553

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.5e-28  Score=226.21  Aligned_cols=251  Identities=21%  Similarity=0.328  Sum_probs=225.0

Q ss_pred             CccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134          125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE  202 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~  202 (394)
                      +...|+++. +.|-..|+..+.++|    .|.||+.++. .+++.++-..-+|.+..|-+..+.+++|+.|..  |++..
T Consensus        12 rSdRVKsVd-~HPtePw~la~LynG----~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   12 RSDRVKSVD-FHPTEPWILAALYNG----DVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             cCCceeeee-cCCCCceEEEeeecC----eeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            334789999 999999999999999    8999999887 888999999999999999999999999999998  69999


Q ss_pred             CCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEec---CCeEEEEeCCCeE
Q 016134          203 SSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVG---RSRLCSGSMDNTI  257 (394)
Q Consensus       203 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V  257 (394)
                      +++.+ .+..|..-|.+++.+|.  .+++++.|                   +|+..|.+++|+   .+.+++++.|++|
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            99887 78899999999999998  88888777                   899999999998   5789999999999


Q ss_pred             EEEeCCCCceeEEEcCCCCCcEEEEEc-C---CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          258 RVWELDTLEPVMTLNDHTDAPMSLLCW-D---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       258 ~iwd~~~~~~~~~~~~h~~~v~~l~~~-~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      +||.+.+..+..++++|...|.++.|. +   .+|++|+.|.+|+|||..+..+++++.+|...+...+    |+|.-. 
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~----fhp~lp-  240 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF----FHPELP-  240 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE----ecCCCc-
Confidence            999999999999999999999999998 3   4999999999999999999999999999987665444    588877 


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134          334 VLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGV  386 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~v  386 (394)
                      ++++|++||+++||+..+.++...+.- ...|++++-.+.+ .++.|.+.|.|.+
T Consensus       241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999999877766654 6789999988877 8888888887654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=2.9e-28  Score=222.68  Aligned_cols=260  Identities=18%  Similarity=0.233  Sum_probs=191.1

Q ss_pred             cCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134          121 DESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--  197 (394)
                      ...||.+.|+++. |-| .+.+++++..++    .|+||++-....+++++.+|..+|.+++|+++|..|+|++.|+.  
T Consensus       209 ~~~gH~kgvsai~-~fp~~~hLlLS~gmD~----~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQ-WFPKKGHLLLSGGMDG----LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhh-hccceeeEEEecCCCc----eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            3569999999999 666 777777666555    99999998766999999999999999999999999999999999  


Q ss_pred             eeecCCCcEEEecCCCCcEEEEEEcCC---EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCC
Q 016134          198 AWNIESSAEFSLDGPVGEVYSMVVANE---MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMD  254 (394)
Q Consensus       198 vWd~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~D  254 (394)
                      +||+++|+++........++++.|.|+   .+++|..+                  .|-+.|..+.|-  +.++++.+.|
T Consensus       284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            699999999876666666777777765   45555544                  355566666663  5556666666


Q ss_pred             CeEEEEeCCCCceeEEE---cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCce---eeEeecccCCcceEEEEeeEC
Q 016134          255 NTIRVWELDTLEPVMTL---NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGN---LEAAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~s  328 (394)
                      ++++||+.+..-+++.+   ..|+-+...+...++.++.-+.|+.|.++.+...-.   .+.+.+|.  ..-.++.+.|+
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~--vaGys~~v~fS  441 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS--VAGYSCQVDFS  441 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee--ccCceeeEEEc
Confidence            66666666554433322   224333333333356666666666666665432211   12223333  23344556799


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWK  388 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd  388 (394)
                      |||. +|++|..||.+.+||.++-+++..+.. ...+..+.|+|..  .+||++.||.|++|+
T Consensus       442 pDG~-~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  442 PDGR-TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCC-eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999 999999999999999999988888876 5789999999987  999999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=3.6e-27  Score=209.74  Aligned_cols=253  Identities=23%  Similarity=0.292  Sum_probs=208.9

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC---CCCEEEEEeCCCc--e
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--A  198 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--v  198 (394)
                      -|.-.|.++. -.  ..|+.++|++|    ++||||...  +.+.++.||.++|.+++|.-   ....|++++.|.+  +
T Consensus       103 ~hdDWVSsv~-~~--~~~IltgsYDg----~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L  173 (423)
T KOG0313|consen  103 LHDDWVSSVK-GA--SKWILTGSYDG----TSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL  173 (423)
T ss_pred             cchhhhhhhc-cc--CceEEEeecCC----eeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence            3445666665 33  78999999998    999999854  67889999999999998843   3346999999999  5


Q ss_pred             eecCCCcEE-----EecCCCCcEEEEEEcCC--EEEEEecC---------------------------------------
Q 016134          199 WNIESSAEF-----SLDGPVGEVYSMVVANE--MLFAGAQD---------------------------------------  232 (394)
Q Consensus       199 Wd~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~~---------------------------------------  232 (394)
                      |.++.++..     ...+|...|.++...++  .+++|+.|                                       
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            888776654     23589999999998877  88888887                                       


Q ss_pred             ----CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134          233 ----GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       233 ----~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                          +|+.+|.++.|. ...+++++.|.+|+.||+.++.++.++.+ ...+.++.+.  ..+|++|+.|..|++||.+++
T Consensus       254 vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC
Confidence                899999999998 67899999999999999999999888874 4678899988  679999999999999999875


Q ss_pred             c---eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-eeEEEec-CCcEEEEEECCCCEEEEEeC
Q 016134          306 G---NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-ERGRIFS-KHEVRVIEIGPDKLFFTGDG  380 (394)
Q Consensus       306 ~---~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~-~~~v~~l~~sp~~~l~tgs~  380 (394)
                      .   ..+.+.+|..-+..+    .|+|...++|++++.|+++++||+++.. ++..+.. .+.|.++.|...++|++|+.
T Consensus       333 ~gs~v~~s~~gH~nwVssv----kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGa  408 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSV----KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGA  408 (423)
T ss_pred             CCceeEEeeecchhhhhhe----ecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccC
Confidence            3   334455565543333    3589998899999999999999999876 6666654 77899999997779999999


Q ss_pred             CCeEEEEeCC
Q 016134          381 AGMLGVWKLL  390 (394)
Q Consensus       381 Dg~I~vWd~~  390 (394)
                      |.+|+|+.-.
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999998743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-26  Score=196.18  Aligned_cols=239  Identities=22%  Similarity=0.311  Sum_probs=191.3

Q ss_pred             cCCCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCC--CceEEEEe-cccCCCeEEEEecCCCCEEEEEeCCC
Q 016134          121 DESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGE--GLTMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDG  196 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~--~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg  196 (394)
                      ...||+..+-.++ |+|. +..+|    +++.|+.||||+...  .+.+...+ .+|+..|.+++|+|.|++|++||.|.
T Consensus         9 ~~~gh~~r~W~~a-whp~~g~ilA----scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    9 KLSGHKDRVWSVA-WHPGKGVILA----SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             eecCCCCcEEEEE-eccCCceEEE----eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4567887888898 9997 56555    455667999999874  34555555 47999999999999999999999999


Q ss_pred             c--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC---CceeE
Q 016134          197 T--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT---LEPVM  269 (394)
Q Consensus       197 ~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~---~~~~~  269 (394)
                      +  ||.-..++..                   .++..+||..+|.|++|+  |++||+++.|++|-||.+..   .+++.
T Consensus        84 t~~Iw~k~~~efe-------------------cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a  144 (312)
T KOG0645|consen   84 TVVIWKKEDGEFE-------------------CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA  144 (312)
T ss_pred             eEEEeecCCCcee-------------------EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence            9  6876544322                   233556999999999997  89999999999999999864   45788


Q ss_pred             EEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCC---CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134          270 TLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATG---RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTV  344 (394)
Q Consensus       270 ~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I  344 (394)
                      .|+.|+..|..+.|++  .+|++++.|++|++|+-..   ..+++++..|..    ..++..|++.|. .|+++++|++|
T Consensus       145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~----TVW~~~F~~~G~-rl~s~sdD~tv  219 (312)
T KOG0645|consen  145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN----TVWSLAFDNIGS-RLVSCSDDGTV  219 (312)
T ss_pred             eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc----eEEEEEecCCCc-eEEEecCCcce
Confidence            8999999999999994  8999999999999998662   345666666653    334446899998 89999999999


Q ss_pred             EEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          345 HLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       345 ~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +||.+...   ....+...+..++|. ++.|++++.|+.|++|.-...
T Consensus       220 ~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  220 SIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             EeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCC
Confidence            99986632   122335679999999 779999999999999987654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=1.1e-28  Score=221.11  Aligned_cols=231  Identities=20%  Similarity=0.306  Sum_probs=199.2

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA  205 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~  205 (394)
                      .|..|. |.|.|+-|.+++.+|    -+.+|+. +.+.....++.|..+|.++.|++++.+++||+.+|.  +|+..-..
T Consensus        98 ~V~~v~-WtPeGRRLltgs~SG----EFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   98 PVNVVR-WTPEGRRLLTGSQSG----EFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ceeeEE-EcCCCceeEeecccc----cEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence            566677 999999999999999    7999997 344666778899999999999999999999999999  49876554


Q ss_pred             EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134          206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~  283 (394)
                      ...+..                     .|...|.+++|+  ...|+++|.|++|+|||....+....+.+|.-.|.+++|
T Consensus       172 Vk~~~a---------------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW  230 (464)
T KOG0284|consen  172 VKIIQA---------------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW  230 (464)
T ss_pred             hHHhhH---------------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence            433222                     344778888887  578999999999999999998888889999999999999


Q ss_pred             c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-c
Q 016134          284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-S  360 (394)
Q Consensus       284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~  360 (394)
                      +  ..+|++++.|..|++||.+++.++.++..|+.  .++.+  .|++++. +|++++.|..+++||+++.+++..+. +
T Consensus       231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~--~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAV--KFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             CCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEE--EEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcc
Confidence            9  67999999999999999999999999888774  34433  4799996 99999999999999999888887777 4


Q ss_pred             CCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134          361 KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       361 ~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      +..|+++.|+|-.  +|.+|+.||.|..|.+.
T Consensus       306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             hhhheeeccccccccceeeccCCCceEEEecc
Confidence            7889999999976  99999999999999987

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.2e-27  Score=228.25  Aligned_cols=253  Identities=18%  Similarity=0.354  Sum_probs=218.4

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA  205 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~  205 (394)
                      .|+.++ |.|...|+.++..+|    .|++||...+ .++..|..|.++|..++|+|+..+++||+.|-.  ||+..+.+
T Consensus        11 RvKgls-FHP~rPwILtslHsG----~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen   11 RVKGLS-FHPKRPWILTSLHSG----VIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             ccccee-cCCCCCEEEEeecCc----eeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            577788 999999999999999    9999999888 889999999999999999999999999999998  69999999


Q ss_pred             EE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeC
Q 016134          206 EF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWEL  262 (394)
Q Consensus       206 ~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~  262 (394)
                      ++ ++.+|...|..+.|++.  .+++++.|                  ||...|.|..|+  .++++++|.|.+|||||+
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI  164 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence            87 88999999999999998  88888887                  899999999998  578999999999999998


Q ss_pred             CC--------C-------------------c--eeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCce--ee
Q 016134          263 DT--------L-------------------E--PVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRGN--LE  309 (394)
Q Consensus       263 ~~--------~-------------------~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~~--~~  309 (394)
                      ..        +                   .  ..+.+++|...|..++|++  .+|++|+.|+.|++|.+...+.  +.
T Consensus       165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD  244 (1202)
T KOG0292|consen  165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD  244 (1202)
T ss_pred             cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence            52        1                   0  1245688999999999996  8999999999999999876543  33


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                      +..+|...+..+    .|+|... ++++.++|++|+|||+.....+.++.. .+.-+.++.+|...|+.++.|+-+.||.
T Consensus       245 tcrgH~nnVssv----lfhp~q~-lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  245 TCRGHYNNVSSV----LFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             hhhcccCCcceE----EecCccc-eeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence            445555444433    3688877 999999999999999999999888876 6679999999999666667788888998


Q ss_pred             CCC
Q 016134          389 LLA  391 (394)
Q Consensus       389 ~~~  391 (394)
                      ++-
T Consensus       320 leR  322 (1202)
T KOG0292|consen  320 LER  322 (1202)
T ss_pred             Ecc
Confidence            873

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=5.3e-27  Score=229.56  Aligned_cols=252  Identities=32%  Similarity=0.431  Sum_probs=215.9

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG  163 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~  163 (394)
                      ...+++++.|+++++|+..++.....           ...||...|..+. +...+..+.    +|+.|.+++|||..++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~-----------~l~GH~g~V~~l~-~~~~~~~lv----sgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILT-----------RLVGHFGGVWGLA-FPSGGDKLV----SGSTDKTERVWDCSTG  281 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEe-----------eccCCCCCceeEE-EecCCCEEE----EEecCCcEEeEecCCC
Confidence            45778999999999999998886541           3789999999998 554555554    5566669999999888


Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecC-CCCcEEEEEEcCCEEEEEecC--------
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDG-PVGEVYSMVVANEMLFAGAQD--------  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~-~~~~v~~l~~~~~~l~~~~~~--------  232 (394)
                       ++..++.+|+..|.++...  ..++++|+.|.+  +|+++++..+.+.. |.++|.++....+.+++|+.|        
T Consensus       282 -~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  282 -ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             -cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEh
Confidence             9999999999999999874  467888999999  69999999996655 999999999998899999988        


Q ss_pred             ----------CCCCCEEEEEecC-CeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEE
Q 016134          233 ----------GHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW  300 (394)
Q Consensus       233 ----------~h~~~V~~l~~~~-~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vw  300 (394)
                                +|...|.++.+++ +.+++|+.|++|++||+++. +|+.++.+|...+..+.+.+++|++++.|++|++|
T Consensus       359 ~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W  438 (537)
T KOG0274|consen  359 RTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLW  438 (537)
T ss_pred             hhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEe
Confidence                      8999999999998 99999999999999999999 99999999999999999999999999999999999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      |..++++++.+... +...+..+.    .. +..+++++.|+++++||++++.....+..
T Consensus       439 D~~~~~~~~~~~~~-~~~~v~~l~----~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~  492 (537)
T KOG0274|consen  439 DAEEGECLRTLEGR-HVGGVSALA----LG-KEEILCSSDDGSVKLWDLRSGTLIRTLLS  492 (537)
T ss_pred             ecccCceeeeeccC-CcccEEEee----cC-cceEEEEecCCeeEEEecccCchhhhhhh
Confidence            99999999998874 212333332    11 23788899999999999999988776644

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.95  E-value=2.3e-26  Score=194.18  Aligned_cols=222  Identities=16%  Similarity=0.284  Sum_probs=179.6

Q ss_pred             ccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEE
Q 016134          141 WLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSM  219 (394)
Q Consensus       141 ~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l  219 (394)
                      +|+++++|-    +||+|...++ .+.++++-..+.|+.|.+.|+++.||+++.-.. ++|+.++....+          
T Consensus        12 iLvsA~YDh----TIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv----------   76 (311)
T KOG0315|consen   12 ILVSAGYDH----TIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV----------   76 (311)
T ss_pred             EEEeccCcc----eeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCce----------
Confidence            345555554    9999999999 899999988899999999999999999998877 899988765211          


Q ss_pred             EEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          220 VVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       220 ~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                               .+.++|++.|+++.|.  +..+++|++||+++|||++...+.+.++ |..+|+++..+  ...|++|..+|
T Consensus        77 ---------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg  146 (311)
T KOG0315|consen   77 ---------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG  146 (311)
T ss_pred             ---------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence                     1455888999999996  8899999999999999999977777665 77999999998  45899999999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee------EEEec-CCcEEEEE
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER------GRIFS-KHEVRVIE  368 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~------~~~~~-~~~v~~l~  368 (394)
                      .|++||+.+..+...+..... ..+..+.  ..|||+ +|+.+...|..++|++-.....      .++.. ...+..+.
T Consensus       147 ~irvWDl~~~~c~~~liPe~~-~~i~sl~--v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~  222 (311)
T KOG0315|consen  147 NIRVWDLGENSCTHELIPEDD-TSIQSLT--VMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL  222 (311)
T ss_pred             cEEEEEccCCccccccCCCCC-cceeeEE--EcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence            999999998766555443222 3333332  489999 8999999999999998765322      22322 55689999


Q ss_pred             ECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          369 IGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       369 ~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ++||+ +|++++.|.+++||+++.
T Consensus       223 lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  223 LSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             ECCCCcEEEeecCCceEEEEecCC
Confidence            99999 999999999999999764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=6.6e-26  Score=216.79  Aligned_cols=291  Identities=23%  Similarity=0.295  Sum_probs=228.0

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      +...++-|=+|..|+||+.++....-            ...||+.+|+.+. +.-.|..+++++.|    +.|.+||+-.
T Consensus        76 d~l~lAVGYaDGsVqif~~~s~~~~~------------tfngHK~AVt~l~-fd~~G~rlaSGskD----t~IIvwDlV~  138 (888)
T KOG0306|consen   76 DILLLAVGYADGSVQIFSLESEEILI------------TFNGHKAAVTTLK-FDKIGTRLASGSKD----TDIIVWDLVG  138 (888)
T ss_pred             CcceEEEEecCceEEeeccCCCceee------------eecccccceEEEE-EcccCceEeecCCC----ccEEEEEecc
Confidence            55567888999999999999764321            4679999999998 77777777655554    4899999966


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC-------
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD-------  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~-------  232 (394)
                      . .-+..++||++.|+..-|..+.++|++.+.|..  +||+++..+. ....|.++++.+++.++.++++..+       
T Consensus       139 E-~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~  217 (888)
T KOG0306|consen  139 E-EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE  217 (888)
T ss_pred             c-eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence            5 668899999999999999998999999999999  5999999998 6678999999999998866666544       


Q ss_pred             --------------------------------------------------------------------------------
Q 016134          233 --------------------------------------------------------------------------------  232 (394)
Q Consensus       233 --------------------------------------------------------------------------------  232 (394)
                                                                                                      
T Consensus       218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~  297 (888)
T KOG0306|consen  218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE  297 (888)
T ss_pred             eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------CCCCCEE
Q 016134          233 -------------------------------------------------------------------------GHTRPVT  239 (394)
Q Consensus       233 -------------------------------------------------------------------------~h~~~V~  239 (394)
                                                                                               +|...|.
T Consensus       298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR  377 (888)
T KOG0306|consen  298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR  377 (888)
T ss_pred             ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence                                                                                     7999999


Q ss_pred             EEEecC-CeEEEEeCCCeEEEEeCCCCceeEEE----------------------------------------cCCCCCc
Q 016134          240 CLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTL----------------------------------------NDHTDAP  278 (394)
Q Consensus       240 ~l~~~~-~~l~sgs~Dg~V~iwd~~~~~~~~~~----------------------------------------~~h~~~v  278 (394)
                      +++++. +.++..+..+.++||+..+.+|++++                                        ++|.+.|
T Consensus       378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI  457 (888)
T KOG0306|consen  378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI  457 (888)
T ss_pred             EEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence            999984 33333344678999999876665542                                        4577888


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEeCCC-----ceeeEeeccc---CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          279 MSLLCW--DQFLLSCSLDHTIKVWFATGR-----GNLEAAYTHK---EDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~-----~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                      ++++..  +..+++++.|.+|++||..--     ...+.+.-+.   -...-..+++.++||++ +|+++-.|++|+||-
T Consensus       458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYF  536 (888)
T ss_pred             eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEE
Confidence            888877  778999999999999996421     1111011110   01122234556899999 999999999999999


Q ss_pred             CCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          349 LPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       349 ~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.+.+....+.+ .-+|.|+.++||+ +++|||.|..|+||-++-.
T Consensus       537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence            999887777665 6789999999999 9999999999999987653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-26  Score=197.09  Aligned_cols=259  Identities=18%  Similarity=0.206  Sum_probs=205.2

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      -.+||.+.++.+. ++-.+.+|.+..-+    .++.||-..++ +.+-++.||++.|+++..+.+.++|+||+.|.+  +
T Consensus         5 ~l~GHERplTqiK-yN~eGDLlFscaKD----~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIK-YNREGDLLFSCAKD----STPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEE-ecCCCcEEEEecCC----CCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            4679999999999 99999998866544    49999998888 889999999999999999999999999999997  7


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCC-EEEEEecC-------------------------------CCCCCEEEEEec--
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQD-------------------------------GHTRPVTCLAVG--  244 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~-------------------------------~h~~~V~~l~~~--  244 (394)
                      ||+++|+++.......+|..+.|+.+ .++..+.|                               .+.+.++.+-|.  
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            99999999988888889999999987 44433333                               455778888887  


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      ++.|++|..||.|.+||+++++ .+...+.|...|+.++++  ..++++++.|.+-++||.++-+.++++... .+....
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~a  237 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTA  237 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccce
Confidence            7899999999999999999975 455667899999999999  679999999999999999988777776543 334444


Q ss_pred             EEEeeECCCCCcEEEEEeCCCe-EEEEECCCC------------ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134          322 ALGGLNDPDGKPVLICACNDNT-VHLYELPSF------------MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGV  386 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~------------~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~v  386 (394)
                      ++    +|....+++.|+.+-. |.-=+.+.+            +++..+.. =++|++++|+|+| ..++|++||.|++
T Consensus       238 ai----sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  238 AI----SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL  313 (327)
T ss_pred             ec----ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence            44    7776645555554321 111112222            22333332 4589999999999 9999999999998


Q ss_pred             EeCC
Q 016134          387 WKLL  390 (394)
Q Consensus       387 Wd~~  390 (394)
                      .-++
T Consensus       314 h~Fd  317 (327)
T KOG0643|consen  314 HHFD  317 (327)
T ss_pred             EEec
Confidence            7654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=3.6e-26  Score=217.02  Aligned_cols=260  Identities=21%  Similarity=0.264  Sum_probs=207.9

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceee-eccccccccccCCCeecCCCCCeEEEEEcC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKK-TTLKNVCCHWLLGNCVRGDECRFLHSWFCG  161 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~-~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~  161 (394)
                      +..+|+++|.|+++++|.-....+.++.          ...|+...+.. +. +-++..|   ....|+.|.+|.+|...
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~----------~~~~~~g~i~~~i~-y~e~~~~---~l~~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQYLETH----------AFEGPKGFIANSIC-YAESDKG---RLVVGGMDTTIIVFKLS   89 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcccccce----------ecccCcceeeccce-eccccCc---ceEeecccceEEEEecC
Confidence            6778899999999999999877776644          35555544443 33 2223333   13446667799999998


Q ss_pred             CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      +. .++.+|++|+..|.+++...++. |+|||.|.+  ||-......                       ...+|+..|+
T Consensus        90 ~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----------------------~l~gH~asVW  144 (745)
T KOG0301|consen   90 QA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----------------------SLQGHTASVW  144 (745)
T ss_pred             CC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-----------------------ccCCcchhee
Confidence            76 89999999999999999887777 999999999  687654332                       2338889999


Q ss_pred             EEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          240 CLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       240 ~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      +++.- .+.++|||.|++|++|.-  ++++++|.+|++.|..+++- +..|++|+.||.|++|++ +++.+..+.+|...
T Consensus       145 Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~  221 (745)
T KOG0301|consen  145 AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF  221 (745)
T ss_pred             eeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceE
Confidence            88764 678999999999999975  78899999999999999998 559999999999999999 67888888887754


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-cEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-EVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      ...+..    ..++. +++++++|++++||+..  ++.+.+.+.. .|+++.+-++|-|++|+.||.|+||....
T Consensus       222 vYsis~----~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  222 VYSISM----ALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEEe----cCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            444442    44555 89999999999999987  6667776644 79999999999999999999999998653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=9.4e-27  Score=203.26  Aligned_cols=258  Identities=21%  Similarity=0.346  Sum_probs=213.4

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEE--------EecccCCCeEEEEecCCCCEEEEEe
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLA--------KLEGHEKAVSGIALPLRSDKLFSGS  193 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~--------~l~~h~~~V~~l~~s~~~~~l~sgs  193 (394)
                      ..|.+..+.+.. |+|+++|+++++.+|    +|.+|+..++ ++..        .+.-|..+|.|+.|+.|...|++|+
T Consensus       209 KFg~KSh~EcA~-FSPDgqyLvsgSvDG----FiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  209 KFGQKSHVECAR-FSPDGQYLVSGSVDG----FIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             ecccccchhhee-eCCCCceEeeccccc----eeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence            346666677776 999999999887777    9999999877 3333        2334789999999999999999999


Q ss_pred             CCCc--eeecCCCcEEE-ec-CCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCe
Q 016134          194 RDGT--AWNIESSAEFS-LD-GPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSR  247 (394)
Q Consensus       194 ~Dg~--vWd~~~~~~~~-~~-~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~  247 (394)
                      .||.  ||.+++|.+++ +. .|...|.++.|+.|  .+++++.|                  +|+..|+...|.  |..
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~  362 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH  362 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence            9999  69999999984 43 68899999999988  78888877                  899999999996  889


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcC--CCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLND--HTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA  322 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  322 (394)
                      +++++.||+|+||+.++.+|+.+|+.  ...+|.++...   ...++.|...++|.+-++. ++.++.+...+...... 
T Consensus       363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF-  440 (508)
T KOG0275|consen  363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF-  440 (508)
T ss_pred             EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce-
Confidence            99999999999999999999999875  34567777665   5689999999999999985 56666665544333322 


Q ss_pred             EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      ++.+.+|.|. ++.+.++|+.++.|.+.++.+...+.- +..|..++-+|.. +|++-++||.+++|.
T Consensus       441 i~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  441 INAILSPKGE-WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEecCCCc-EEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            2334699999 999999999999999999988877765 6678999999988 999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.9e-25  Score=197.92  Aligned_cols=264  Identities=16%  Similarity=0.201  Sum_probs=212.3

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ....|+..+.+++ .+|...|++++    +.|-.-.+|+..++ ....++.+|+..|+++.|+.+|.+||||+.+|.  |
T Consensus        59 tF~~H~~svFavs-l~P~~~l~aTG----GgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   59 TFDKHTDSVFAVS-LHPNNNLVATG----GGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV  132 (399)
T ss_pred             ehhhcCCceEEEE-eCCCCceEEec----CCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence            3557777888888 88877777755    44448999999998 688999999999999999999999999999999  6


Q ss_pred             eecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCC
Q 016134          199 WNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDN  255 (394)
Q Consensus       199 Wd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg  255 (394)
                      |+..++... .+......+.-|.|+|.  .+++|+.|                  +|..++++=.|.  |++++++..||
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence            999998876 45556677888889987  77777777                  788888888885  78999999999


Q ss_pred             eEEEEeCCCCceeEEEcC-CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec--------ccCCcceEEEE
Q 016134          256 TIRVWELDTLEPVMTLND-HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT--------HKEDNGVLALG  324 (394)
Q Consensus       256 ~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~  324 (394)
                      +|++||+++++++..+.. ......++.+.  +..++.|+.++.+++-+..+++.+.....        +......+.. 
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~-  291 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES-  291 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh-
Confidence            999999999999888863 23345566665  77888899999988888777776655542        1111222211 


Q ss_pred             eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          325 GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       325 ~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..++..-. +.|+|+.||+|.|||+..........++..|+.+.|.++.+|++++.||.|++||..+.
T Consensus       292 ~~~ss~lp-L~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  292 IPSSSKLP-LAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             cccccccc-hhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc
Confidence            11233334 89999999999999999999998999999999999999559999999999999998875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=4.4e-25  Score=195.62  Aligned_cols=283  Identities=17%  Similarity=0.201  Sum_probs=226.9

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      .+.+.+||++|...+||+..++.+..            ...||+-+|+++. |+-++.|||++..+|    .|+||+..+
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~ge~~~------------eltgHKDSVt~~~-FshdgtlLATGdmsG----~v~v~~~st  137 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTGEFAG------------ELTGHKDSVTCCS-FSHDGTLLATGDMSG----KVLVFKVST  137 (399)
T ss_pred             CCceEEecCCCceEEEEEccCCccee------------EecCCCCceEEEE-EccCceEEEecCCCc----cEEEEEccc
Confidence            45577999999999999999998643            5678999999999 999999999888887    999999988


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCC-CcEEEecCCCCcEEEEEEcCC--EEEEEecCC----
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYSMVVANE--MLFAGAQDG----  233 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~-~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~~----  233 (394)
                      + .....+..--..|.=|.|+|.+..|+.|+.||.+  |.+.+ +.+..+.+|..++.+=.|.|+  .++++..++    
T Consensus       138 g-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~  216 (399)
T KOG0296|consen  138 G-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV  216 (399)
T ss_pred             C-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence            8 4445555566788889999999999999999996  66766 445578899999999999998  888887771    


Q ss_pred             ------C---------CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc--------CCCCCcEEEEEc----
Q 016134          234 ------H---------TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN--------DHTDAPMSLLCW----  284 (394)
Q Consensus       234 ------h---------~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--------~h~~~v~~l~~~----  284 (394)
                            +         ..+..++.++  +..++.|+.++.+++-+..+++.+..+.        .+...+.++.+.    
T Consensus       217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence                  1         1234455554  6789999999999999999988877665        344445555544    


Q ss_pred             -CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CC
Q 016134          285 -DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KH  362 (394)
Q Consensus       285 -~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~  362 (394)
                       =.+.|+|+.||+|.|||+...+. +....|...  ++.+  .|.+ .. +|++++.+|.|++||.++++++..+.+ ..
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~--V~~l--~w~~-t~-~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~  369 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAASTL-RHICEHEDG--VTKL--KWLN-TD-YLLTACANGKVRQWDARTGQLKFTYTGHQM  369 (399)
T ss_pred             ccchhhcccccceEEEEecccchh-heeccCCCc--eEEE--EEcC-cc-hheeeccCceEEeeeccccceEEEEecCch
Confidence             25788999999999999976543 444445544  3333  3455 33 899999999999999999999998876 66


Q ss_pred             cEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .|.+++++|+. +++|+|.|++.+||++.
T Consensus       370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  370 GILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            79999999999 99999999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=1.5e-25  Score=194.05  Aligned_cols=222  Identities=22%  Similarity=0.366  Sum_probs=189.0

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc-E-EEecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA-E-FSLDGPVGEVYSMVVANE--MLFAGAQD------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~-~-~~~~~~~~~v~~l~~~~~--~l~~~~~~------  232 (394)
                      .++..+.+|++.|+.+.|+|+|.+|+||+.|..  +|+..... . ..+.+|.+.|..+.|..+  .+++++.|      
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            567788999999999999999999999999999  59854332 2 367899999999999988  77777776      


Q ss_pred             ------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          233 ------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       233 ------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                                  +|..-|+++...   ..++.+++.|++++|||+++.+++++++ ....++++.|.  +..+++|+-|+
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence                        788888888764   5679999999999999999999998886 45788999998  78899999999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc----eeEEEec-----CCcEEE
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM----ERGRIFS-----KHEVRV  366 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~-----~~~v~~  366 (394)
                      .|++||++.......+.+|...+..+.+    +++|. ++.+-+.|.++++||++...    ++..+..     +.....
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsl----s~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSL----SRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEe----ccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            9999999999999999999987777766    89999 89999999999999998653    2333332     345677


Q ss_pred             EEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          367 IEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       367 l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++|+|++ .+..|+.|..+.+||....
T Consensus       272 cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  272 CSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             eeccCCCCccccccccceEEEeecccc
Confidence            8999999 9999999999999998763

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.7e-24  Score=210.07  Aligned_cols=207  Identities=19%  Similarity=0.288  Sum_probs=160.0

Q ss_pred             EecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134          169 KLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-  244 (394)
Q Consensus       169 ~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-  244 (394)
                      .+.+|.+.|++++|+| ++++|++|+.|++  |||+.++.....  ....+            ....+|...|.+++|+ 
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~~~l------------~~L~gH~~~V~~l~f~P  135 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--ISDPI------------VHLQGHTKKVGIVSFHP  135 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cCcce------------EEecCCCCcEEEEEeCc
Confidence            5789999999999999 8899999999999  699976532110  00011            1233789999999997 


Q ss_pred             --CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce
Q 016134          245 --RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV  320 (394)
Q Consensus       245 --~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  320 (394)
                        +++|++++.|++|+|||+++++.+..+..|...|.+++|+  +.+|++++.|++|++||+++++.+..+..|......
T Consensus       136 ~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~  215 (493)
T PTZ00421        136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ  215 (493)
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce
Confidence              3589999999999999999999999999999999999998  789999999999999999998887777666543222


Q ss_pred             EEEEeeECCCCCcEEEEE---eCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEe-CCCeEEEEeCCCC
Q 016134          321 LALGGLNDPDGKPVLICA---CNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sg---s~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs-~Dg~I~vWd~~~~  392 (394)
                      .   ..|.+++..++.+|   +.|+.|++||+++.........   ...+....|++++ +|++++ .|+.|++||+..+
T Consensus       216 ~---~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        216 R---CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             E---EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            2   23577776344444   3479999999997654333222   3346667899998 777776 6999999999764

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=3.8e-24  Score=210.25  Aligned_cols=228  Identities=14%  Similarity=0.170  Sum_probs=171.3

Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      |+..+.|++|+.... ..+..+.+|.+.|.+++|+|+ +.+|+||+.|++  |||+.++..... ....++         
T Consensus        50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p~---------  118 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDPQ---------  118 (568)
T ss_pred             CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccce---------
Confidence            556669999998765 678899999999999999996 789999999999  699986532100 000001         


Q ss_pred             EEEEecCCCCCCEEEEEecC--C-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          226 LFAGAQDGHTRPVTCLAVGR--S-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~~--~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                         ....+|...|.+++|++  . +|++++.|++|+|||+++++.+..+. |...|.+++|+  +.+|++++.|+.|+||
T Consensus       119 ---~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIw  194 (568)
T PTZ00420        119 ---CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHII  194 (568)
T ss_pred             ---EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEE
Confidence               12237889999999983  3 56899999999999999998887776 66789999998  8899999999999999


Q ss_pred             EeCCCceeeEeecccCCcceEEE-EeeECCCCCcEEEEEeCC----CeEEEEECCC-CceeEEEecCC---cEEEEEECC
Q 016134          301 FATGRGNLEAAYTHKEDNGVLAL-GGLNDPDGKPVLICACND----NTVHLYELPS-FMERGRIFSKH---EVRVIEIGP  371 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~l~sgs~d----g~I~iwd~~~-~~~~~~~~~~~---~v~~l~~sp  371 (394)
                      |+++++.+..+..|........+ ...|++++. +|++++.|    ++|+|||++. ...+..+....   .+......+
T Consensus       195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~  273 (568)
T PTZ00420        195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES  273 (568)
T ss_pred             ECCCCcEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence            99999888888777654333322 223568888 67776655    4799999996 44554444322   233333344


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCC
Q 016134          372 DK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       372 ~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++ ++++|+.|+.|++|++..+
T Consensus       274 tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        274 TGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCCEEEEEECCCeEEEEEccCC
Confidence            56 8999999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.1e-26  Score=212.60  Aligned_cols=223  Identities=18%  Similarity=0.302  Sum_probs=197.5

Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC--------
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD--------  232 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~--------  232 (394)
                      ..+.+..|+..|.++.|+|....++++=..|.  ||+.++...+ .+.-.+.+|.+..|-..  .+++|+.|        
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34566779999999999999999999999998  7999998887 55666778888888665  88888877        


Q ss_pred             ----------CCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCc
Q 016134          233 ----------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHT  296 (394)
Q Consensus       233 ----------~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~  296 (394)
                                .|.+.|.+|+.++  .+++++|.|-+|++||.+. ..+.++|++|.-.|++++|.   .+.+++++.|++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence                      7999999999995  5799999999999999975 57899999999999999999   579999999999


Q ss_pred             EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-E
Q 016134          297 IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-L  374 (394)
Q Consensus       297 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~  374 (394)
                      |+||.+....+..++.+|...+.++.+   +....+++|++|++|.+|+|||.++..++.++.+ .+.|..+.|+|.- .
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdy---y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDY---YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI  241 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEe---ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence            999999999999999999877776665   4555567999999999999999999999999985 7889999999998 9


Q ss_pred             EEEEeCCCeEEEEeCCC
Q 016134          375 FFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~~~  391 (394)
                      |++|++||+|+||+-.+
T Consensus       242 iisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EEEecCCccEEEecCcc
Confidence            99999999999998654

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2e-24  Score=211.06  Aligned_cols=262  Identities=15%  Similarity=0.134  Sum_probs=188.4

Q ss_pred             cccccccCCCCCcccccccCCCCCC-CCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEc
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYT-GPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~-~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~  160 (394)
                      +.+.+++++.+..+..|+...+... .+.+.-.......-..||...|..+. |+| ++.++++++.++    +|++||+
T Consensus        31 d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~-fsP~d~~~LaSgS~Dg----tIkIWdi  105 (493)
T PTZ00421         31 DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVA-FNPFDPQKLFTASEDG----TIMGWGI  105 (493)
T ss_pred             CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEE-EcCCCCCEEEEEeCCC----EEEEEec
Confidence            4456677888888888876654321 11110000111224569999999999 999 777888776666    9999999


Q ss_pred             CCCc------eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          161 GEGL------TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       161 ~~~~------~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      .++.      .++..+.+|...|.+++|+|++ ++|++++.|++  |||+++++...                     ..
T Consensus       106 ~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---------------------~l  164 (493)
T PTZ00421        106 PEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---------------------VI  164 (493)
T ss_pred             CCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---------------------EE
Confidence            6542      4678899999999999999975 79999999998  69999886542                     11


Q ss_pred             CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcE-EEEEc--CCEEEEEe----CCCcEEEEEe
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM-SLLCW--DQFLLSCS----LDHTIKVWFA  302 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~--~~~l~s~s----~Dg~i~vwd~  302 (394)
                      .+|...|.+++|+  +.+|++++.|++|+|||+++++.+.++.+|.+.+. .+.|.  +..|++++    .|+.|++||+
T Consensus       165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            2577788888886  67899999999999999999999999999987543 45555  45666654    4799999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK  373 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~  373 (394)
                      ++..............  ......|++++. +|++++ .|+.|++||+.+++.......  ...+..++|.|..
T Consensus       245 r~~~~p~~~~~~d~~~--~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        245 RKMASPYSTVDLDQSS--ALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCCCceeEeccCCCC--ceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            8755333322222111  222334789998 666665 599999999999877655433  4567888888864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=8.9e-25  Score=185.86  Aligned_cols=260  Identities=15%  Similarity=0.160  Sum_probs=217.0

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--  197 (394)
                      .++|...+.+|+ |+.++..++++++++    ++.+|+++.. ...-....+|.+.|-.++|+| ..++|++++.|.+  
T Consensus        16 ~~~~~~~v~Sv~-wn~~g~~lasgs~dk----tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   16 LQGHVQKVHSVA-WNCDGTKLASGSFDK----TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             hhhhhhcceEEE-EcccCceeeecccCC----ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            567778899999 999999999887777    9999999755 223345578999999999987 5689999999998  


Q ss_pred             eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCe
Q 016134          198 AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNT  256 (394)
Q Consensus       198 vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~  256 (394)
                      +||+..+++.......++-.-+.|+|+  .++++..+                 ...-.+..+.|+  +++++.....|+
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            699999998865555555566778777  66666655                 334567777886  677777777799


Q ss_pred             EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134          257 IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       257 V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      |.|......++++++++|.....|+.|+  |++||+|+.|-.+.+||+..--+++.+..+.-++..++    |+.+|+ +
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS----FS~dg~-~  245 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS----FSHDGR-M  245 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE----eccCcc-e
Confidence            9999999999999999999999999999  89999999999999999998888888887776666555    488999 9


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCC---------CeEEEEeCCC
Q 016134          335 LICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGA---------GMLGVWKLLA  391 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~D---------g~I~vWd~~~  391 (394)
                      ||++++|..|-|=++++|..+..+....+...++|+|.. +||.++.|         |.|++|-+.+
T Consensus       246 lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  246 LASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             eeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence            999999999999999999999999999999999999999 77777654         6788876653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=195.08  Aligned_cols=263  Identities=21%  Similarity=0.297  Sum_probs=207.2

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc-----
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC-----  160 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~-----  160 (394)
                      -+.++|+|.|.+||.+|++.+..            ...||...|.++. |++.+.++++++-++    +-+||..     
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~------------~Y~GH~GSVNsik-fh~s~~L~lTaSGD~----taHIW~~av~~~  224 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLA------------TYTGHTGSVNSIK-FHNSGLLLLTASGDE----TAHIWKAAVNWE  224 (481)
T ss_pred             ceeecccccceeEEeecccccee------------eecccccceeeEE-eccccceEEEccCCc----chHHHHHhhcCc
Confidence            45689999999999999999753            4678999999999 999999888776655    8888871     


Q ss_pred             -CC------------------------------C---ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          161 -GE------------------------------G---LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       161 -~~------------------------------~---~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                       ..                              +   ..++..|.+|...|.+..|-..++.+++++.|.+  +||++++
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence             11                              0   1357788999999999999999999999999999  8999999


Q ss_pred             cEEE-ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEE
Q 016134          205 AEFS-LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMS  280 (394)
Q Consensus       205 ~~~~-~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~  280 (394)
                      +.+. +.                      +|..+.+-++-+  ..++++.+.|-+.++||++. -..+..|++|+..|++
T Consensus       305 e~v~~Lt----------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  305 EVVNILT----------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             ceecccc----------------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            9873 33                      555555555544  46788999999999999985 3457788999999999


Q ss_pred             EEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134          281 LLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF  359 (394)
Q Consensus       281 l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~  359 (394)
                      +.|. +..+++++.|.+|++||+++............+...+++    +..+. +|+.--++..|++||+.... +..++
T Consensus       363 ~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvav----s~g~~-iIAiPhDNRqvRlfDlnG~R-laRlP  436 (481)
T KOG0300|consen  363 VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAV----SKGHP-IIAIPHDNRQVRLFDLNGNR-LARLP  436 (481)
T ss_pred             EEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEe----ecCCc-eEEeccCCceEEEEecCCCc-cccCC
Confidence            9999 899999999999999999976543333333444455554    33444 88888888999999997543 33333


Q ss_pred             ------cCCcEEEEEECCCC---EEEEEeCCCeEEEEeCCCCC
Q 016134          360 ------SKHEVRVIEIGPDK---LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       360 ------~~~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~~  393 (394)
                            +..-|+|++|..+.   .|++++.|..+.-|++....
T Consensus       437 rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             cccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence                  23459999999876   89999999999999998653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.4e-26  Score=192.57  Aligned_cols=231  Identities=16%  Similarity=0.163  Sum_probs=180.4

Q ss_pred             ceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCC
Q 016134          128 TSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIES  203 (394)
Q Consensus       128 ~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~  203 (394)
                      .+-.|+ |++. ...+.+++-||    ++++||......+++.++.|+.+|.++.|++ +.+.++++|.|++  +|+...
T Consensus        62 ~LfdV~-Wse~~e~~~~~a~GDG----SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   62 GLFDVA-WSENHENQVIAASGDG----SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             ceeEee-ecCCCcceEEEEecCc----eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            344455 6663 33344445454    9999999877789999999999999999998 5677888899999  699887


Q ss_pred             CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134          204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS  280 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~  280 (394)
                      .+.+.                     +..+|...|...+|+   +++++++|.|+++++||++.......++.|...|.+
T Consensus       137 ~~Sv~---------------------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~  195 (311)
T KOG0277|consen  137 PNSVQ---------------------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC  195 (311)
T ss_pred             CcceE---------------------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence            77653                     233677777777776   789999999999999999875544558999999999


Q ss_pred             EEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          281 LLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       281 l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      +.|+   ...|+|++.|+.|++||+++-+ ++..+..|.-.+..    +.|+|....+|++++.|-+++|||...+....
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk----vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~  271 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK----VKFSPHHASLLASASYDMTVRIWDPERQDSAI  271 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE----EecCcchhhHhhhccccceEEecccccchhhh
Confidence            9998   6799999999999999998754 44555555433332    34688877799999999999999998654333


Q ss_pred             -EEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134          357 -RIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWK  388 (394)
Q Consensus       357 -~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd  388 (394)
                       +..+ ..-|..+.|++-.  ++|+++.|+.+.||+
T Consensus       272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hhhhccceEEeccccccccCceeeecccccceeeec
Confidence             3333 4448899999865  999999999999998

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.8e-24  Score=195.57  Aligned_cols=265  Identities=17%  Similarity=0.223  Sum_probs=211.8

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG  163 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~  163 (394)
                      +..+.+|+.|+++-+.|...+..-.            ...||.+.|..+. +++....+++++.+-    .|+||.....
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~------------~~~Gh~kki~~v~-~~~~~~~v~~aSad~----~i~vws~~~~  293 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILA------------TLKGHTKKITSVK-FHKDLDTVITASADE----IIRVWSVPLS  293 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhh------------hccCcceEEEEEE-eccchhheeecCCcc----eEEeeccccc
Confidence            4678999999999999998777543            6789999999999 999888877776665    9999999776


Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL  241 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l  241 (394)
                       ........|..+|+.+..+|.|+||++++.|++  .-|++++..+....+.                   ...-.+++.
T Consensus       294 -s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-------------------~s~v~~ts~  353 (506)
T KOG0289|consen  294 -SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-------------------TSDVEYTSA  353 (506)
T ss_pred             -cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-------------------cccceeEEe
Confidence             456777899999999999999999999999999  4788888876432221                   122346666


Q ss_pred             Eec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          242 AVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       242 ~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      +|+  +.+|.+|..|+.|+|||+.+...+..|.+|+++|.++.|+  |.+|++++.|+.|++||+|..+...++......
T Consensus       354 ~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~  433 (506)
T KOG0289|consen  354 AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK  433 (506)
T ss_pred             eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc
Confidence            776  5678899999999999999999999999999999999999  789999999999999999998877766654332


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECC--CCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELP--SFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                       .+.++  .|++.|. +|+.++.|=+|++++-.  ++.++..+.. .+..+++.|.... ++++++.|..++++.+
T Consensus       434 -~v~s~--~fD~SGt-~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  434 -EVNSL--SFDQSGT-YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             -cceeE--EEcCCCC-eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence             33333  4688999 78778777666666633  3444444443 4468889998887 9999999999999865

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.7e-25  Score=185.93  Aligned_cols=233  Identities=16%  Similarity=0.201  Sum_probs=180.1

Q ss_pred             ccc---cccccCCCeecC-CCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCc
Q 016134          135 KNV---CCHWLLGNCVRG-DECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSA  205 (394)
Q Consensus       135 ~~~---~~~~~~~~~~~g-~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~  205 (394)
                      |+|   ....+|++...| ..+|.+.|.++..+  ....+.+ .-.+.+.+++|+++ .+.+++++.||.  |||+....
T Consensus        16 fSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s   94 (311)
T KOG0277|consen   16 FSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS   94 (311)
T ss_pred             ecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC
Confidence            555   233356665555 56789999999533  2333333 24688999999985 578999999999  69954332


Q ss_pred             EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEE
Q 016134          206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL  282 (394)
Q Consensus       206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  282 (394)
                      ..        +.            ....|..+|.++.|+   ...++++|.|++|++||....+.++++.+|...|+...
T Consensus        95 ~P--------i~------------~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   95 KP--------IH------------KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             cc--------hh------------HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence            21        11            233788889999987   46688889999999999999999999999999999999


Q ss_pred             Ec---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-eEEE
Q 016134          283 CW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-RGRI  358 (394)
Q Consensus       283 ~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-~~~~  358 (394)
                      |+   +++++++|.|+++++||++.......+..|..  .+++.  .|+.-..++|+||+.|+.|++||+++.+. +..+
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~c--dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCC--DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEee--cccccCCcEEEecCCCceEEEEehhhccccceee
Confidence            98   78999999999999999998777666776663  33333  35665566999999999999999998754 3333


Q ss_pred             ec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          359 FS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       359 ~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .. .-.|+.+.|+|..  +|++++.|-+++|||...+
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            32 4459999999987  9999999999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.4e-25  Score=213.29  Aligned_cols=243  Identities=15%  Similarity=0.185  Sum_probs=191.5

Q ss_pred             cccCC-CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC--------------------------------C--
Q 016134          119 VSDES-GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE--------------------------------G--  163 (394)
Q Consensus       119 ~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~--------------------------------~--  163 (394)
                      .++.. .|+++|-+.. |++||.|||+++-|+    .||||.+..                                .  
T Consensus       259 ~Qe~~~ah~gaIw~mK-FS~DGKyLAsaGeD~----virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMK-FSHDGKYLASAGEDG----VIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             eeccccccCCcEEEEE-eCCCCceeeecCCCc----eEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence            34555 8889999999 999999999888777    999998755                                0  


Q ss_pred             -------------------------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcE
Q 016134          164 -------------------------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEV  216 (394)
Q Consensus       164 -------------------------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v  216 (394)
                                               .++++.|.||.+.|.+|.|+. ..+|+|++.|.+  +|++...+++...      
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F------  406 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF------  406 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE------
Confidence                                     235677789999999999986 469999999999  6999999998654      


Q ss_pred             EEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE
Q 016134          217 YSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC  291 (394)
Q Consensus       217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~  291 (394)
                                      .|...|+|++|+   .++|++|+-|++||||++...+.+.-.. -..-|++++|.  |+..+.|
T Consensus       407 ----------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIG  469 (712)
T KOG0283|consen  407 ----------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIG  469 (712)
T ss_pred             ----------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEE
Confidence                            567777888886   6899999999999999998766655444 44889999998  8999999


Q ss_pred             eCCCcEEEEEeCCCceeeEeecccC------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CC
Q 016134          292 SLDHTIKVWFATGRGNLEAAYTHKE------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KH  362 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~  362 (394)
                      +.+|.+++|+.+..+..........      ...+..+.  |.|....-|++.+.|..|||||.++..++..+.+   ..
T Consensus       470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q--~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~  547 (712)
T KOG0283|consen  470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ--FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS  547 (712)
T ss_pred             EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE--ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence            9999999999987665544433211      12344444  3433322455567899999999988888877775   34


Q ss_pred             cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .-....|+.|| +|+++++|..|+||+++..
T Consensus       548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  548 SQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            45667899999 9999999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=5.1e-24  Score=201.89  Aligned_cols=237  Identities=23%  Similarity=0.384  Sum_probs=198.9

Q ss_pred             CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecC-CCCcEEEEEEcCCE
Q 016134          150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDG-PVGEVYSMVVANEM  225 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~-~~~~v~~l~~~~~~  225 (394)
                      ..+..|++|+..++ .......-+...|+++.|+++|.+|+.|..+|.  |||..+.+.+ .+.. |...|.+++|....
T Consensus       194 alg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~  272 (484)
T KOG0305|consen  194 ALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSV  272 (484)
T ss_pred             EecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCce
Confidence            34448999999887 444444445899999999999999999999999  6999888776 4555 89999999999888


Q ss_pred             EEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134          226 LFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       226 l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  284 (394)
                      +.+|+.+                   +|..+|..++|+  +.+||+|+.|+.+.|||....+++..+..|..+|.+++|+
T Consensus       273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc  352 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC  352 (484)
T ss_pred             EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence            8888776                   799999999997  7899999999999999998889999999999999999998


Q ss_pred             ---CCEEEEEe--CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-EeCCCeEEEEECCCCceeEEE
Q 016134          285 ---DQFLLSCS--LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-ACNDNTVHLYELPSFMERGRI  358 (394)
Q Consensus       285 ---~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-gs~dg~I~iwd~~~~~~~~~~  358 (394)
                         ..+||+|+  .|+.|++||..++..+..+....   .+.  .+.|++..+.++.+ |..++.|.||+..+.+.+..+
T Consensus       353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVc--sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l  427 (484)
T KOG0305|consen  353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVC--SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL  427 (484)
T ss_pred             CCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---cee--eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence               67899876  59999999999888777665432   233  33478888745554 455789999999998887777


Q ss_pred             ec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          359 FS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       359 ~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .. ...|..++++||| .+++|+.|.++++|++-.+
T Consensus       428 ~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            65 7789999999999 9999999999999998763

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=6.7e-24  Score=208.51  Aligned_cols=242  Identities=15%  Similarity=0.142  Sum_probs=176.6

Q ss_pred             cCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCCc---
Q 016134           89 SGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEGL---  164 (394)
Q Consensus        89 s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~~---  164 (394)
                      +|+.+..+++|+.......            ....||...|.++. |+|. ..++++++.++    +|+|||+.++.   
T Consensus        49 gGG~~gvI~L~~~~r~~~v------------~~L~gH~~~V~~la-fsP~~~~lLASgS~Dg----tIrIWDi~t~~~~~  111 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPV------------IKLKGHTSSILDLQ-FNPCFSEILASGSEDL----TIRVWEIPHNDESV  111 (568)
T ss_pred             CCCceeEEEeeecCCCceE------------EEEcCCCCCEEEEE-EcCCCCCEEEEEeCCC----eEEEEECCCCCccc
Confidence            4555778888876643221            24678999999999 9996 67888776666    99999997532   


Q ss_pred             ----eEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCC
Q 016134          165 ----TMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRP  237 (394)
Q Consensus       165 ----~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~  237 (394)
                          .++..+.+|...|.+++|+|++.. |++++.|++  |||+++++.....                      .|...
T Consensus       112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i----------------------~~~~~  169 (568)
T PTZ00420        112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI----------------------NMPKK  169 (568)
T ss_pred             cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE----------------------ecCCc
Confidence                245678899999999999998875 579999999  6999988754211                      23456


Q ss_pred             EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE-----c--CCEEEEEeCCC----cEEEEEeCC
Q 016134          238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC-----W--DQFLLSCSLDH----TIKVWFATG  304 (394)
Q Consensus       238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~-----~--~~~l~s~s~Dg----~i~vwd~~~  304 (394)
                      |.+++|+  +.+|++++.|+.|+|||+++++.+.++.+|.+.+.+..+     .  +.+|++++.|+    +|+|||++.
T Consensus       170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            7788886  788999999999999999999999999999887654332     2  57888888774    799999996


Q ss_pred             -CceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCce--eEEEecCCcEEEEEECCCC
Q 016134          305 -RGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFME--RGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       305 -~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~sp~~  373 (394)
                       .+++..+ .+......+  ...+++ ++. ++++|+.|++|++|++..+..  +..+....++.+++|.|..
T Consensus       250 ~~~pl~~~-~ld~~~~~L--~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        250 TTSALVTM-SIDNASAPL--IPHYDESTGL-IYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCceEEE-EecCCccce--EEeeeCCCCC-EEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence             4444433 232222222  112344 465 889999999999999987632  2222235678899999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=9.4e-24  Score=220.71  Aligned_cols=236  Identities=15%  Similarity=0.182  Sum_probs=184.8

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-------eEEEEecccCCCeEEEEecC-CCCEEEEEe
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-------TMLAKLEGHEKAVSGIALPL-RSDKLFSGS  193 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-------~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs  193 (394)
                      ..+|...|.+++ |++++.++++++.++    .|+||+.....       .+...+. +...|.+++|++ ++.+|++++
T Consensus       479 ~~~~~~~V~~i~-fs~dg~~latgg~D~----~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        479 LLNSSNLVCAIG-FDRDGEFFATAGVNK----KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             ccCCCCcEEEEE-ECCCCCEEEEEeCCC----EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence            445778899999 999999998877666    99999975311       1233343 356899999987 578999999


Q ss_pred             CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCcee
Q 016134          194 RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPV  268 (394)
Q Consensus       194 ~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~  268 (394)
                      .|++  |||+.+++.+.                     ...+|...|++++|+   +.+|++|+.|++|++||+++++++
T Consensus       553 ~Dg~v~lWd~~~~~~~~---------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        553 FEGVVQVWDVARSQLVT---------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             CCCeEEEEECCCCeEEE---------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            9999  69999876553                     122678888888886   468999999999999999999999


Q ss_pred             EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134          269 MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTV  344 (394)
Q Consensus       269 ~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I  344 (394)
                      ..+..+ ..|.++.|.   +.+|++|+.|+.|++||+++.+ .+..+..|...+..+.    |. ++. +|++++.|++|
T Consensus       612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~----f~-~~~-~lvs~s~D~~i  684 (793)
T PLN00181        612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR----FV-DSS-TLVSSSTDNTL  684 (793)
T ss_pred             EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE----Ee-CCC-EEEEEECCCEE
Confidence            888754 678999885   7899999999999999998765 3445555554333332    34 556 89999999999


Q ss_pred             EEEECCCC------ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          345 HLYELPSF------MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       345 ~iwd~~~~------~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +|||++..      ..+..+.. ...+..++|+|++ +|++|+.|+.|++|+...
T Consensus       685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            99999753      34444443 5568999999999 999999999999999653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=2.6e-23  Score=188.94  Aligned_cols=220  Identities=30%  Similarity=0.487  Sum_probs=183.4

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC---------
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD---------  232 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~---------  232 (394)
                      ++++++|.++|++++|+|++++|++++.|+.  +|++.+++.. .+..+...+..+.|.++  .+++++.+         
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            3567799999999999999999999999998  6999887654 56678888889999887  67777655         


Q ss_pred             ---------CCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134          233 ---------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV  299 (394)
Q Consensus       233 ---------~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v  299 (394)
                               .|...|.++.|.+  .++++++.|+.|++||+++++.+..+..|...+.++.++  +.++++++.|+.|++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence                     4677899999984  677777779999999999999999999999999999999  467777777999999


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEE
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~t  377 (394)
                      ||++..+.+..+..+......+    .++|+++ .|++++.|+.|++||++.++.+..+ .+...+.+++|+|++ ++++
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~----~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSV----AFSPDGE-KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             EEccccccceeEecCccccceE----EECCCcC-EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence            9999877777776554433333    3589987 6777888999999999998887777 446689999999998 7888


Q ss_pred             EeCCCeEEEEeCCC
Q 016134          378 GDGAGMLGVWKLLA  391 (394)
Q Consensus       378 gs~Dg~I~vWd~~~  391 (394)
                      ++.|+.|++|++.+
T Consensus       237 ~~~~~~i~i~~~~~  250 (289)
T cd00200         237 GSEDGTIRVWDLRT  250 (289)
T ss_pred             EcCCCcEEEEEcCC
Confidence            87799999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.5e-23  Score=171.60  Aligned_cols=256  Identities=17%  Similarity=0.217  Sum_probs=200.2

Q ss_pred             CccceeeeccccccccccCCCeecCCCCCeEEEEEcC------CC--------ceEEEEecccCCCeEEEEecCCCCEEE
Q 016134          125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG------EG--------LTMLAKLEGHEKAVSGIALPLRSDKLF  190 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~------~~--------~~~~~~l~~h~~~V~~l~~s~~~~~l~  190 (394)
                      +..+|++|+ |.|.+.+-|.++.+.    ++||-...      .+        ....+.-+-|++.|.|.+|+|+|++|+
T Consensus        31 dsqairav~-fhp~g~lyavgsnsk----t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia  105 (350)
T KOG0641|consen   31 DSQAIRAVA-FHPAGGLYAVGSNSK----TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA  105 (350)
T ss_pred             chhheeeEE-ecCCCceEEeccCCc----eEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence            345889999 999888877666555    77775332      11        122333456899999999999999999


Q ss_pred             EEeCCCce----eecCCC----cEEEecCCCCcEEEEEEcCC------EEEEEecC-------------------CCCCC
Q 016134          191 SGSRDGTA----WNIESS----AEFSLDGPVGEVYSMVVANE------MLFAGAQD-------------------GHTRP  237 (394)
Q Consensus       191 sgs~Dg~v----Wd~~~~----~~~~~~~~~~~v~~l~~~~~------~l~~~~~~-------------------~h~~~  237 (394)
                      +|+.|.+|    ++.++.    ..+.+.-|.+.|..++|-.+      .|++++..                   +|++.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            99999994    555543    34577889999999999654      45544332                   79999


Q ss_pred             EEEE-EecCCeEEEEeCCCeEEEEeCCCCceeEEEcC--C-----CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134          238 VTCL-AVGRSRLCSGSMDNTIRVWELDTLEPVMTLND--H-----TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       238 V~~l-~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--h-----~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      |.++ .|++-++++|+.|.+||.||++-..++.++..  |     .+.|.+++..  |.+|+++-.|....+||++.++.
T Consensus       186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            9887 47899999999999999999999888887743  2     3568888877  89999999999999999999999


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC---cee--EEEecCCcEEEEEECCCC-EEEEEeCC
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF---MER--GRIFSKHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~---~~~--~~~~~~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                      ++.+..|...+.++    .|+|... ++++++.|..|++-|++..   ++.  ..-.++..+..+.|+|.. -+++.+.|
T Consensus       266 iq~f~phsadir~v----rfsp~a~-yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad  340 (350)
T KOG0641|consen  266 IQRFHPHSADIRCV----RFSPGAH-YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD  340 (350)
T ss_pred             eeeeCCCccceeEE----EeCCCce-EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence            99988877655544    3588776 9999999999999998743   111  222346778889999999 89999999


Q ss_pred             CeEEEEeCC
Q 016134          382 GMLGVWKLL  390 (394)
Q Consensus       382 g~I~vWd~~  390 (394)
                      .++.+|-++
T Consensus       341 kt~tlwa~~  349 (350)
T KOG0641|consen  341 KTATLWALN  349 (350)
T ss_pred             ceEEEeccC
Confidence            999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.7e-24  Score=210.35  Aligned_cols=219  Identities=17%  Similarity=0.275  Sum_probs=165.4

Q ss_pred             eEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecC------------------------------
Q 016134          165 TMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDG------------------------------  211 (394)
Q Consensus       165 ~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~------------------------------  211 (394)
                      ...+.+. +|+++|.++.|++||+|||+|+.|+.  ||.+...+......                              
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4456666 89999999999999999999999999  69987622211000                              


Q ss_pred             ----CCCcEEEEEEcCCEEEE------EecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134          212 ----PVGEVYSMVVANEMLFA------GAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS  280 (394)
Q Consensus       212 ----~~~~v~~l~~~~~~l~~------~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~  280 (394)
                          ......++.+ |...+.      ..+.||.+.|.+|.|+ .++|+++|+|.+||+|++...+|+..|. |.+.|+|
T Consensus       337 s~~~~~~~s~~~~~-p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLL-PLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             cccccccCCccccC-CCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence                0000001111 111111      1122999999999999 7899999999999999999999999997 9999999


Q ss_pred             EEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE
Q 016134          281 LLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR  357 (394)
Q Consensus       281 l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~  357 (394)
                      ++|+   +++|++|+.|+.||||++...+.+. ......-++    +++|.|+|+ ..+.|+.+|.+++|+....+....
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lIT----Avcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLIT----AVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhhe----eEEeccCCc-eEEEEEeccEEEEEEccCCeEEEe
Confidence            9999   7899999999999999997654433 333332233    334699999 888899999999999998766544


Q ss_pred             Eec---------CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          358 IFS---------KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       358 ~~~---------~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..-         .+.|+.+.|.|..  .|+..+.|..|+|+|+.+
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~  533 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD  533 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence            321         2369999999876  688889999999999854

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.9e-25  Score=196.34  Aligned_cols=262  Identities=16%  Similarity=0.223  Sum_probs=204.7

Q ss_pred             CCCCCcccc--cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC
Q 016134           72 KKSPPSYNR--LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG  149 (394)
Q Consensus        72 ~~~~~~~~~--~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g  149 (394)
                      .....-|-.  .+++.++||+|.|.|.-+|.+........++         ..-||...|..+. |+|+.+|+.+...+.
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~---------tlvgh~~~V~yi~-wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKK---------TLVGHSQPVSYIM-WSPDDRYLLACGFDE  291 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeee---------eeecccCceEEEE-ECCCCCeEEecCchH
Confidence            445566655  3377799999999999999988655432222         5678999999999 999999988766655


Q ss_pred             CCCCeEEEEEcCCCceEEEEe-cccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecC-CCCcEEEEEEcCC-
Q 016134          150 DECRFLHSWFCGEGLTMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDG-PVGEVYSMVVANE-  224 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~-~~~~v~~l~~~~~-  224 (394)
                          .+.+||+.++ ...+.+ .+|...+.+++|.|||..+++|+.|+.+  ||++......-.+ ....|.+++..+| 
T Consensus       292 ----~~~lwDv~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  292 ----VLSLWDVDTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             ----heeeccCCcc-hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence                6999999988 444433 4567899999999999999999999994  9987765443222 2246888888887 


Q ss_pred             -EEEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEE--E
Q 016134          225 -MLFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL--L  282 (394)
Q Consensus       225 -~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l--~  282 (394)
                       .+++...|                 ....+|+++..+  +.++++--.+..|++||++..+.++.+.+|...-.-+  +
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC  446 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC  446 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence             44444444                 345688888887  6778888889999999999999999999987654433  3


Q ss_pred             Ec---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          283 CW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       283 ~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      |-   ..++++||+|++|+||+..+++.+..+.+|.....+++    |+|....++|++++||+|+||.....
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs----wNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS----WNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe----cCCCCHHHhhccCCCCeEEEecCCcc
Confidence            33   47999999999999999999999999999885554443    58988889999999999999987643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=6.3e-24  Score=206.35  Aligned_cols=244  Identities=20%  Similarity=0.284  Sum_probs=191.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ....++||++|..|+|||..+..+.-            ...||---|+.+. |.+.-.|+.+++-|-    +||||+..+
T Consensus        62 ~qplFVSGGDDykIkVWnYk~rrclf------------tL~GHlDYVRt~~-FHheyPWIlSASDDQ----TIrIWNwqs  124 (1202)
T KOG0292|consen   62 TQPLFVSGGDDYKIKVWNYKTRRCLF------------TLLGHLDYVRTVF-FHHEYPWILSASDDQ----TIRIWNWQS  124 (1202)
T ss_pred             CCCeEEecCCccEEEEEecccceehh------------hhccccceeEEee-ccCCCceEEEccCCC----eEEEEeccC
Confidence            55578999999999999999888753            5779999999999 999999998776554    999999998


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCC--CCcEEEE-----EE-cCCEEEEEecC
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGP--VGEVYSM-----VV-ANEMLFAGAQD  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~--~~~v~~l-----~~-~~~~l~~~~~~  232 (394)
                      . +++..+.||..-|.|..|+|..++++|+|-|.+  |||+..-+.......  .......     -| ..|.++--..+
T Consensus       125 r-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  125 R-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             C-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence            8 899999999999999999999999999999999  699976544322111  1111111     11 12344555667


Q ss_pred             CCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCc
Q 016134          233 GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       233 ~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                      ||...|+-++|++  .+|++|+.|..|++|.+..-+  .+-+..+|...|.++.|++  +++++.++|++|+|||+...+
T Consensus       204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence            9999999999997  689999999999999987644  3556789999999999994  899999999999999999988


Q ss_pred             eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      .++++......-.+++.    +|..+ ++++| .|+-+.+|.++
T Consensus       284 ~v~tfrrendRFW~laa----hP~lN-LfAAg-HDsGm~VFkle  321 (1202)
T KOG0292|consen  284 SVQTFRRENDRFWILAA----HPELN-LFAAG-HDSGMIVFKLE  321 (1202)
T ss_pred             ceeeeeccCCeEEEEEe----cCCcc-eeeee-cCCceEEEEEc
Confidence            88888765544444443    77777 66644 45555555544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=2.2e-24  Score=187.47  Aligned_cols=265  Identities=17%  Similarity=0.170  Sum_probs=211.7

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-----------------CceEEEEecccCCCeEEEEec
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-----------------GLTMLAKLEGHEKAVSGIALP  183 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-----------------~~~~~~~l~~h~~~V~~l~~s  183 (394)
                      ....|+...+.-+ |+++|.++|+++.+.    .|+|.|++.                 ....+++|-.|.++|+++.|+
T Consensus       107 ylt~HK~~cR~aa-fs~DG~lvATGsaD~----SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  107 YLTSHKSPCRAAA-FSPDGSLVATGSADA----SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             EEeecccceeeee-eCCCCcEEEccCCcc----eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            3446777777777 999999999988887    899999861                 124688999999999999999


Q ss_pred             CCCCEEEEEeCCCc--eeecCCCcEE---EecCCCCcEEEEEEcCC--EEEEEecC---------------------CCC
Q 016134          184 LRSDKLFSGSRDGT--AWNIESSAEF---SLDGPVGEVYSMVVANE--MLFAGAQD---------------------GHT  235 (394)
Q Consensus       184 ~~~~~l~sgs~Dg~--vWd~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~~---------------------~h~  235 (394)
                      |....|++++.|++  ++|+......   .......+|.++.|+|.  ++++|+..                     +|+
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            99999999999999  5887654322   34455668999999987  77777654                     799


Q ss_pred             CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCC-CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceee
Q 016134          236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTD-APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE  309 (394)
Q Consensus       236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~-~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~  309 (394)
                      ..|+++.++  +++.++++.||.|+|||--+++|+.++. +|.+ .|.+..|.  ++++++.+.|..+++|.+.+++.+.
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence            999999998  7899999999999999999999999885 4654 57778887  8899999999999999999999888


Q ss_pred             EeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE--ecCCcEEEEEECCCC-EEEEEeCCCeEE
Q 016134          310 AAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI--FSKHEVRVIEIGPDK-LFFTGDGAGMLG  385 (394)
Q Consensus       310 ~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~~sp~~-~l~tgs~Dg~I~  385 (394)
                      ...+.... .........|+....++|.---..+.+.-||.++...+..+  .+.+.++.+.-+|.+ -++|++.|-.++
T Consensus       342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR  421 (430)
T KOG0640|consen  342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR  421 (430)
T ss_pred             EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence            87654211 11122223367777755555555688999999998665544  346779999999999 999999999999


Q ss_pred             EEeCC
Q 016134          386 VWKLL  390 (394)
Q Consensus       386 vWd~~  390 (394)
                      +|--.
T Consensus       422 FWyrr  426 (430)
T KOG0640|consen  422 FWYRR  426 (430)
T ss_pred             eeeec
Confidence            99643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.7e-24  Score=193.77  Aligned_cols=228  Identities=21%  Similarity=0.326  Sum_probs=184.1

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIES  203 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~  203 (394)
                      ..+.++. |..+|.++|.+..+|    .|+|+|.++ ...++.+.+|+.+|..+.|+|++ ..|++|+.|+.  +||+.+
T Consensus        69 ~~v~s~~-fR~DG~LlaaGD~sG----~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   69 DVVYSVD-FRSDGRLLAAGDESG----HVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             cceeEEE-eecCCeEEEccCCcC----cEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            4677777 888899998777776    999999554 36788999999999999999965 55667777766  699988


Q ss_pred             CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcE
Q 016134          204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPM  279 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~  279 (394)
                      .....                     ...+|++.|.|.+|+   +.+++||+.||+||+||+++. ..+.++. |..+|.
T Consensus       143 a~v~~---------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe  200 (487)
T KOG0310|consen  143 AYVQA---------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE  200 (487)
T ss_pred             cEEEE---------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee
Confidence            76421                     233888899999987   458999999999999999987 6666765 889999


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          280 SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      .+.+-  |..+++++. ..|++||+.++..+..... |...++++.+    ..++. .|++++.|+.|++||+.+.+.+.
T Consensus       201 ~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l----~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  201 SVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL----ASDST-RLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             eEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEe----ecCCc-eEeecccccceEEEEccceEEEE
Confidence            99988  578888775 6899999986655444433 5554554444    45676 89999999999999999999999


Q ss_pred             EEecCCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          357 RIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       357 ~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      .+.-..+|.+++.+|++ .++.|..||.+.+=+
T Consensus       275 s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  275 SWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             eeecccceeeEEecCCCceEEEecccceeeeeh
Confidence            88889999999999998 999999999886653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-23  Score=202.62  Aligned_cols=285  Identities=15%  Similarity=0.178  Sum_probs=225.1

Q ss_pred             ccccc---ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEE
Q 016134           81 LKNNL---WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHS  157 (394)
Q Consensus        81 ~~~~~---~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~i  157 (394)
                      ++|++   +|+-||.+..+.+||+.+++..-            ..++....|+++. ++|.-..+|-++.+|    .|.|
T Consensus       166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~------------~f~~~~s~IT~ie-qsPaLDVVaiG~~~G----~Vii  228 (910)
T KOG1539|consen  166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVY------------TFQEFFSRITAIE-QSPALDVVAIGLENG----TVII  228 (910)
T ss_pred             ecchhheeeEEEeecCCcEEEEEeccCcEEE------------EecccccceeEec-cCCcceEEEEeccCc----eEEE
Confidence            55666   57789999999999999998642            2445556788888 999999999999988    9999


Q ss_pred             EEcCCCceEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEE--EecCCCCcEEEEEEcCC--EEEEEe
Q 016134          158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEF--SLDGPVGEVYSMVVANE--MLFAGA  230 (394)
Q Consensus       158 Wd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~  230 (394)
                      ++++.+ +.+.+++--.+.|+.++|.-||+. |++|...|.  +||++..+..  ....|.+.|....|.+.  .+++++
T Consensus       229 fNlK~d-kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~  307 (910)
T KOG1539|consen  229 FNLKFD-KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG  307 (910)
T ss_pred             EEcccC-cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc
Confidence            999988 778888755799999999999865 566667686  6999887665  22345555555555443  333333


Q ss_pred             cC------------------------------------------------------------------------------
Q 016134          231 QD------------------------------------------------------------------------------  232 (394)
Q Consensus       231 ~~------------------------------------------------------------------------------  232 (394)
                      .|                                                                              
T Consensus       308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~  387 (910)
T KOG1539|consen  308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV  387 (910)
T ss_pred             CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence            33                                                                              


Q ss_pred             ----------------------------------------------------CCC------CCEEEEEec--CCeEEEEe
Q 016134          233 ----------------------------------------------------GHT------RPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       233 ----------------------------------------------------~h~------~~V~~l~~~--~~~l~sgs  252 (394)
                                                                          .+.      ..+++++.+  |++.+.|+
T Consensus       388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~  467 (910)
T KOG1539|consen  388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY  467 (910)
T ss_pred             cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence                                                                222      456666665  89999999


Q ss_pred             CCCeEEEEeCCCCceeEEE---cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE-----------------
Q 016134          253 MDNTIRVWELDTLEPVMTL---NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA-----------------  310 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~-----------------  310 (394)
                      ..|+|-+|++++|-...++   ..|..+|+.++.+  ++.+++++.+|.+++||..+...+..                 
T Consensus       468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence            9999999999999888888   6999999999999  99999999999999999876542222                 


Q ss_pred             ------------------------eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE
Q 016134          311 ------------------------AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV  366 (394)
Q Consensus       311 ------------------------~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~  366 (394)
                                              +.+|..  .+.  ..+|+|||+ +|++++.|++|++||+.++.++-.+.-..++++
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n--rit--d~~FS~Dgr-WlisasmD~tIr~wDlpt~~lID~~~vd~~~~s  622 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGN--RIT--DMTFSPDGR-WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTS  622 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhcccc--cee--eeEeCCCCc-EEEEeecCCcEEEEeccCcceeeeEecCCccee
Confidence                                    112222  222  234799999 999999999999999999999999988999999


Q ss_pred             EEECCCC-EEEEEeCC-CeEEEEe
Q 016134          367 IEIGPDK-LFFTGDGA-GMLGVWK  388 (394)
Q Consensus       367 l~~sp~~-~l~tgs~D-g~I~vWd  388 (394)
                      +.|+|+| +|||...| .-|.+|.
T Consensus       623 ls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  623 LSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eEECCCCCEEEEEEecCceEEEEE
Confidence            9999999 99999998 5799995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=2.8e-23  Score=198.98  Aligned_cols=257  Identities=16%  Similarity=0.280  Sum_probs=222.5

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|+++. ++.+...++++...     .|+||+..+. ++++++..  +.+.+..|-|.++++++|...|.  |
T Consensus       368 ~~~GHR~dVRsl~-vS~d~~~~~Sga~~-----SikiWn~~t~-kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  368 EIGGHRSDVRSLC-VSSDSILLASGAGE-----SIKIWNRDTL-KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eeccchhheeEEE-eecCceeeeecCCC-----cEEEEEccCc-ceeEEecc--ccEEEEEecCCCceEEEeccCCceEE
Confidence            3559999999999 88877777755432     7999999887 88888864  38899999999999999999998  6


Q ss_pred             eecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------------------CCCCCEEEEEec-
Q 016134          199 WNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------------------GHTRPVTCLAVG-  244 (394)
Q Consensus       199 Wd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------------------~h~~~V~~l~~~-  244 (394)
                      +|+.+...+ ....|.+.+.+++..|+  .+++|+.|                              .-...|.|+.++ 
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            999888776 56789999999999998  77777777                              234688899998 


Q ss_pred             -CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          245 -RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       245 -~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                       +.+|+++--|.+|+||-+++.+..-++.+|.-+|.|+..+  +++++|||.|..|++|-+.=+.+-+.+..|...+..+
T Consensus       519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV  598 (888)
T ss_pred             CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence             7899999999999999999999999999999999999888  7899999999999999998899999998888654433


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .    |-|+.. ++.+++.|+.|+-||-.+++.+..+.. ...|++++.+|+| ++++++.|..|++|....
T Consensus       599 ~----F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  599 Q----FLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             E----Ecccce-eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            3    578766 899999999999999999999998877 6679999999999 999999999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=1.9e-23  Score=186.12  Aligned_cols=213  Identities=26%  Similarity=0.430  Sum_probs=178.9

Q ss_pred             ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcC-C----EEEEEecC------------
Q 016134          172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVAN-E----MLFAGAQD------------  232 (394)
Q Consensus       172 ~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~-~----~l~~~~~~------------  232 (394)
                      -|.+-|.++...  ++.|+||++||.  |||..........+|.+++.++++.. +    .+++++.|            
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            488999999887  789999999999  79998888889999999999887743 2    58888887            


Q ss_pred             ----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC-------------------------CCceeEEEcCCC
Q 016134          233 ----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD-------------------------TLEPVMTLNDHT  275 (394)
Q Consensus       233 ----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~-------------------------~~~~~~~~~~h~  275 (394)
                                ||...|.++...  +..+++||.|.+|+||+..                         ++.++.++.+|.
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence                      899999999975  7899999999999999932                         134677889999


Q ss_pred             CCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-
Q 016134          276 DAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-  353 (394)
Q Consensus       276 ~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-  353 (394)
                      .+|.++.|. ...+++++.|.+|+.||+.+++....+.+...   ..  ++.++|... +|++|+.|..|++||.+++. 
T Consensus       261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks---l~--~i~~~~~~~-Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS---LN--CISYSPLSK-LLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcc---ee--Eeecccccc-eeeecCCCCceeecCCCCCCC
Confidence            999999999 77899999999999999999988877765432   22  334578777 99999999999999999763 


Q ss_pred             -eeE-EE-ecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          354 -ERG-RI-FSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       354 -~~~-~~-~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                       .+. ++ .|...|.++.|+|..  +|++++.|+++++||+.+.
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence             222 22 236679999999988  9999999999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2e-23  Score=182.00  Aligned_cols=222  Identities=19%  Similarity=0.329  Sum_probs=173.4

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------  232 (394)
                      .++++.|.||++.|+.++.......+.+++.|.+  ||.++++.++ ...+|.+.|+++.|++.  .+++++.|      
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            3556666677777777766655566667777766  6777777766 55667777777777665  55555544      


Q ss_pred             ----------------------------------------------------CCCCCEEEEEec--CCeEEEEeCCCeEE
Q 016134          233 ----------------------------------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIR  258 (394)
Q Consensus       233 ----------------------------------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~  258 (394)
                                                                          +|...|.+..|-  ++.+++++.|.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence                                                                788888888884  78999999999999


Q ss_pred             EEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEE
Q 016134          259 VWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVL  335 (394)
Q Consensus       259 iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l  335 (394)
                      +||+++++++..+.+|....+.++-+  .+++++.+.|.+.++||++.. ..+..+.+|...+....    |..+.+  +
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v----F~~dd~--v  371 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV----FNTDDR--V  371 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE----EecCCc--e
Confidence            99999999999999999999888877  568889999999999999853 23455666665544433    455554  8


Q ss_pred             EEEeCCCeEEEEECCCC-ceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          336 ICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       336 ~sgs~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ++|++|.+|+|||+++. ..+.++....+++.++++..+ .|+.--.+..|++||++-
T Consensus       372 VSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             eecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence            99999999999999987 466777778899999999888 888888889999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=9.4e-24  Score=192.15  Aligned_cols=245  Identities=18%  Similarity=0.251  Sum_probs=183.4

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC---------ceEEEEecccCCCeEEEEecCC-CCEEEEEe
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG---------LTMLAKLEGHEKAVSGIALPLR-SDKLFSGS  193 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---------~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs  193 (394)
                      -|.+.|..+.+.......+|+....+    .|.|||..+-         ..+-..|.+|++.=++|+|++. .-.|++++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~----dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSG----DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCC----CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence            34455555552222344455554444    8999998532         2233488999998899999984 45789999


Q ss_pred             CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC--CCc
Q 016134          194 RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD--TLE  266 (394)
Q Consensus       194 ~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~--~~~  266 (394)
                      .|++  +||+.......      .+        ........+|...|..++|+   .++|++++.|+.+.|||+|  +.+
T Consensus       198 ~d~~i~lwdi~~~~~~~------~~--------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  198 DDHTICLWDINAESKED------KV--------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK  263 (422)
T ss_pred             CCCcEEEEeccccccCC------cc--------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence            9998  69997654320      00        01112334899999999997   6889999999999999999  567


Q ss_pred             eeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC
Q 016134          267 PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN  342 (394)
Q Consensus       267 ~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg  342 (394)
                      +.+..++|...|.|++|+   +..||+||.|++|.+||+|+.. ++..+..|...+    +.+.|+|....+|++++.|+
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev----~~V~WSPh~etvLASSg~D~  339 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV----FQVEWSPHNETVLASSGTDR  339 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce----EEEEeCCCCCceeEecccCC
Confidence            778889999999999998   6789999999999999999754 455555555433    33457999888999999999


Q ss_pred             eEEEEECCCCceeE------------EEec---CCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134          343 TVHLYELPSFMERG------------RIFS---KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       343 ~I~iwd~~~~~~~~------------~~~~---~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      .+.|||+..-....            .+.|   ...|..+.|+|..  .|++.++|+.+.||++.
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            99999987532221            1223   4569999999998  99999999999999976

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.2e-23  Score=189.90  Aligned_cols=238  Identities=18%  Similarity=0.288  Sum_probs=189.1

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE---E-------------EEe-cccCCCeEEEEecC
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM---L-------------AKL-EGHEKAVSGIALPL  184 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~---~-------------~~l-~~h~~~V~~l~~s~  184 (394)
                      ...|..++.+++ ++|+..++.+++-+|    +|.-|++.++...   +             ..- ++|.+.|.+++.++
T Consensus       138 ~~~H~~s~~~va-ls~d~~~~fsask~g----~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  138 IGKHQLSVTSVA-LSPDDKRVFSASKDG----TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             eccccCcceEEE-eeccccceeecCCCc----ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            347778999998 999888887666665    8999998766322   1             111 37899999999999


Q ss_pred             CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEE
Q 016134          185 RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVW  260 (394)
Q Consensus       185 ~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iw  260 (394)
                      |+++|++|+.|..  ||+.++.+.+..                     +.+|.+.|.+++|-  .+.|++++.|++|++|
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~---------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw  271 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKV---------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVW  271 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhc---------------------ccccccceeeeeeecCccceeeeecCCceEEE
Confidence            9999999999998  699999886632                     22788899999986  5789999999999999


Q ss_pred             eCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          261 ELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       261 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                      +++....+.++.+|++.|..+...  +..+-+++.|+++++|++.. +....+..+.....+.++   .+.  . .+++|
T Consensus       272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~---In~--~-HfvsG  344 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAF---IND--E-HFVSG  344 (479)
T ss_pred             ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEE---ecc--c-ceeec
Confidence            999988999999999999999887  45555566999999999954 333445555434444444   232  2 68999


Q ss_pred             eCCCeEEEEECCCCceeEEEec-----C--------CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          339 CNDNTVHLYELPSFMERGRIFS-----K--------HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       339 s~dg~I~iwd~~~~~~~~~~~~-----~--------~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.||.|.+|++.+.+++.....     .        .+|++++..|.. ++++|+.+|+|++|.+.+.
T Consensus       345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            9999999999998887766543     1        179999999988 9999999999999998765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=3.4e-23  Score=206.11  Aligned_cols=284  Identities=14%  Similarity=0.136  Sum_probs=217.3

Q ss_pred             cccccccCC--CCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc
Q 016134           83 NNLWVSSGS--EDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s--~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~  160 (394)
                      +..+++||+  .|..++||+.+.=.-....+..+-.-.......|..+|.+|. |++++.++|.++-    |+.|.||..
T Consensus        24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR-~S~dG~~lAsGSD----D~~v~iW~~   98 (942)
T KOG0973|consen   24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVR-FSPDGSYLASGSD----DRLVMIWER   98 (942)
T ss_pred             CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEE-ECCCCCeEeeccC----cceEEEeee
Confidence            778899999  799999999874221000000000011234557888999999 9999999986554    459999987


Q ss_pred             CC-----------------CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEE
Q 016134          161 GE-----------------GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVV  221 (394)
Q Consensus       161 ~~-----------------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~  221 (394)
                      ..                 .++.+..+.+|...|.+++|+|++.+|++++.|++  ||+..+.+.+.             
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~-------------  165 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK-------------  165 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee-------------
Confidence            62                 14578999999999999999999999999999999  69999886553             


Q ss_pred             cCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC------CcEEEEEc--CCEEEEE
Q 016134          222 ANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD------APMSLLCW--DQFLLSC  291 (394)
Q Consensus       222 ~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~------~v~~l~~~--~~~l~s~  291 (394)
                              ..++|...|..+.|+  |++|++-+.|++|+||++.+....+.+..+-.      .+..+.|+  |++|++.
T Consensus       166 --------vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  166 --------VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             --------eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence                    233788888888898  89999999999999999888777777765433      35666777  8899886


Q ss_pred             eC----CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC----CCC--------cEEEEEeCCCeEEEEECCCCcee
Q 016134          292 SL----DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP----DGK--------PVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       292 s~----Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~g~--------~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      ..    -.++.|.+-.+.+.-..+.+|..+..++.+...+-.    +|.        .++|+|+.|++|.||.....+++
T Consensus       238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            43    347888887777777888888876665554211100    111        17899999999999999887777


Q ss_pred             EEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          356 GRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+..  ...|..++|+||| .|+.+|.||+|.+..++++
T Consensus       318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            66655  7889999999999 9999999999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=2.3e-22  Score=171.70  Aligned_cols=196  Identities=21%  Similarity=0.329  Sum_probs=162.5

Q ss_pred             EecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          169 KLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       169 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                      .++||+.+++.|.++.+|++|+|++.|.+  ||-..+|+.+                     |+.++|++.|+|+..+  
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------Gty~GHtGavW~~Did~~   63 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------GTYDGHTGAVWCCDIDWD   63 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------eeecCCCceEEEEEecCC
Confidence            46899999999999999999999999998  7888777765                     3566999999999886  


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-----CCcEEEEEeCC-------CceeeE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-----DHTIKVWFATG-------RGNLEA  310 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-----Dg~i~vwd~~~-------~~~~~~  310 (394)
                      ...+++|+.|.++++||+++|+++.+++ -..+|..+.|+  +++++.+..     .+.|.++|++.       .++...
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            6889999999999999999999999998 56789999998  555555543     35799999983       344556


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--cCCcEEEEEECCCC-EEEEEeCCCeEEEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--SKHEVRVIEIGPDK-LFFTGDGAGMLGVW  387 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp~~-~l~tgs~Dg~I~vW  387 (394)
                      +..+......    ..|.|-++ +|++|.+||.|.+||++++.+.....  +.+.|+.|++++|. +++|++.|.+-++|
T Consensus       143 I~t~~skit~----a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  143 IPTPDSKITS----ALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV  217 (327)
T ss_pred             ecCCccceee----eeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence            6555533332    23689999 99999999999999999987665543  36689999999999 99999999999999


Q ss_pred             eCCC
Q 016134          388 KLLA  391 (394)
Q Consensus       388 d~~~  391 (394)
                      |+.+
T Consensus       218 D~~t  221 (327)
T KOG0643|consen  218 DVRT  221 (327)
T ss_pred             eccc
Confidence            9864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.9e-22  Score=171.81  Aligned_cols=265  Identities=17%  Similarity=0.195  Sum_probs=196.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..+++.|.|.+++|+|..++......+|        -..|-    ..+.+-+.....+   ..+...|.+||..++.+
T Consensus        25 ~G~~litss~dDsl~LYd~~~g~~~~ti~s--------kkyG~----~~~~Fth~~~~~i---~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   25 DGLLLITSSEDDSLRLYDSLSGKQVKTINS--------KKYGV----DLACFTHHSNTVI---HSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             CCCEEEEecCCCeEEEEEcCCCceeeEeec--------ccccc----cEEEEecCCceEE---EccCCCCCceEEEEeec
Confidence            777788888899999999999986542210        11121    1111011111111   11224567999999999


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      + +.++.+.||...|++|+.+|-++.++|++.|++  +||++..++.-+...                     ...+  .
T Consensus        90 N-kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---------------------~~~p--i  145 (311)
T KOG1446|consen   90 N-KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---------------------SGRP--I  145 (311)
T ss_pred             C-ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---------------------CCCc--c
Confidence            8 899999999999999999999999999999999  699998776532111                     1122  2


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCCC--ceeEEEcC---CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDTL--EPVMTLND---HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~---h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~  311 (394)
                      .+|+  |-++|++.....|++||++..  .+..++.-   -....+.|.|+  |++|+.+...+.+.+.|.-.+..+..+
T Consensus       146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence            3555  556777777779999999874  35555543   35678899999  899999999999999999999988887


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      ..+..... ..+..+|+||++ ++++|+.||+|.+|+++++..+..+..  ..++.++.|+|.- ++++++  ..+.+|-
T Consensus       226 s~~~~~~~-~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~  301 (311)
T KOG1446|consen  226 SGYPNAGN-LPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL  301 (311)
T ss_pred             eeccCCCC-cceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence            77665433 335667899999 999999999999999999999988877  5679999999997 666654  5677775


Q ss_pred             CC
Q 016134          389 LL  390 (394)
Q Consensus       389 ~~  390 (394)
                      ..
T Consensus       302 p~  303 (311)
T KOG1446|consen  302 PD  303 (311)
T ss_pred             cc
Confidence            44

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.6e-22  Score=184.25  Aligned_cols=269  Identities=17%  Similarity=0.187  Sum_probs=203.4

Q ss_pred             cccccccCCCCCcccccccCCCCCC---CCC----CCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYT---GPK----NSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~---~~~----~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      +.+.+.++|.|.+|--|++.++.-.   -.+    ++-.-.....+ .+|.+.+-+++ .++++.|++++..+.    .|
T Consensus       153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~a-vS~Dgkylatgg~d~----~v  226 (479)
T KOG0299|consen  153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLA-VSSDGKYLATGGRDR----HV  226 (479)
T ss_pred             cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEE-EcCCCcEEEecCCCc----eE
Confidence            7778889999999999999998732   111    11111222223 48889999999 999999999665554    99


Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                      .||+..+. +.++.+.+|.+.|.+++|-.....|++++.|+.  +|+++....+ .+.                      
T Consensus       227 ~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly----------------------  283 (479)
T KOG0299|consen  227 QIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY----------------------  283 (479)
T ss_pred             EEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh----------------------
Confidence            99999987 889999999999999999888889999999999  6999877655 222                      


Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceee
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLE  309 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~  309 (394)
                      +|...|.+|...  +..+-+|+.|+++++|++.. +....+.+|.+.+-|++|- ...|++|+.+|.|.+|++...+++.
T Consensus       284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf  362 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLF  362 (479)
T ss_pred             CCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCcee
Confidence            777788877764  44555566999999999943 4445567888899999998 7899999999999999998887776


Q ss_pred             EeecccCCc----------ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC----ceeEEEecCCcEEEEEECCCC-E
Q 016134          310 AAYTHKEDN----------GVLALGGLNDPDGKPVLICACNDNTVHLYELPSF----MERGRIFSKHEVRVIEIGPDK-L  374 (394)
Q Consensus       310 ~~~~~~~~~----------~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~~~v~~l~~sp~~-~  374 (394)
                      .......-.          .+.++.  ..|... ++++|+.+|.|++|-+..+    .++..+...+-|++++|+++| .
T Consensus       363 ~~~~AHgv~~~~~~~~~~~Witsla--~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  363 TSRLAHGVIPELDPVNGNFWITSLA--VIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKR  439 (479)
T ss_pred             EeeccccccCCccccccccceeeeE--ecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCE
Confidence            654322111          223332  345555 9999999999999999887    344455557789999999999 4


Q ss_pred             EEEE-eCCCeE
Q 016134          375 FFTG-DGAGML  384 (394)
Q Consensus       375 l~tg-s~Dg~I  384 (394)
                      |++| +....+
T Consensus       440 ivagiGkEhRl  450 (479)
T KOG0299|consen  440 IVAGIGKEHRL  450 (479)
T ss_pred             EEEeccccccc
Confidence            5554 333333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.1e-23  Score=173.16  Aligned_cols=247  Identities=17%  Similarity=0.146  Sum_probs=186.1

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--eEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL--TMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~--~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~  197 (394)
                      ..+|+..|.... ..-.+..||+.+.|+    +|+|+.+.++.  +++.+|.||+++|..++|..  -|.+||+++.||.
T Consensus         7 dt~H~D~IHda~-lDyygkrlATcsSD~----tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    7 DTQHEDMIHDAQ-LDYYGKRLATCSSDG----TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             hhhhhhhhhHhh-hhhhcceeeeecCCc----cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            345555666666 667788899988887    99999997654  78999999999999999954  7999999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCC---cee
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTL---EPV  268 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~---~~~  268 (394)
                        ||.-+.++-.....+.                   .|...|++++|.    +-.|++++.||.|.|.+.++.   ...
T Consensus        82 VIiWke~~g~w~k~~e~~-------------------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~  142 (299)
T KOG1332|consen   82 VIIWKEENGRWTKAYEHA-------------------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS  142 (299)
T ss_pred             EEEEecCCCchhhhhhhh-------------------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch
Confidence              6998888543332222                   678888888885    457999999999999998754   223


Q ss_pred             EEEcCCCCCcEEEEEc-----C-----------CEEEEEeCCCcEEEEEeCCCc--eeeEeecccCCcceEEEEeeECCC
Q 016134          269 MTLNDHTDAPMSLLCW-----D-----------QFLLSCSLDHTIKVWFATGRG--NLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       269 ~~~~~h~~~v~~l~~~-----~-----------~~l~s~s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      +....|.-.|+++++.     |           +.|++|+.|..|+||+..++.  ....+..|..-+.-++++.... -
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g-l  221 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG-L  221 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-C
Confidence            4456799999999986     2           469999999999999987752  2233555665555555432211 1


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCc--eeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          331 GKPVLICACNDNTVHLYELPSFM--ERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       331 g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .+..|+++++||+|.||..+...  -..++..  ...+..+.|++.| .|+.++.|+.|.+|.-+.++
T Consensus       222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G  289 (299)
T KOG1332|consen  222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG  289 (299)
T ss_pred             CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence            23379999999999999876331  1222222  5679999999999 99999999999999866543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=3.4e-22  Score=170.20  Aligned_cols=254  Identities=17%  Similarity=0.208  Sum_probs=195.3

Q ss_pred             CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCC
Q 016134           72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGD  150 (394)
Q Consensus        72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~  150 (394)
                      .-..++|+.  ++.++++||-|+++++||++...+....          ..+||...|..+. |.| ....+++++.+  
T Consensus        22 ~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~----------~~~gh~~svdql~-w~~~~~d~~atas~d--   86 (313)
T KOG1407|consen   22 KVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKEL----------VYRGHTDSVDQLC-WDPKHPDLFATASGD--   86 (313)
T ss_pred             cceEEEEcc--cCceeeecccCCceEEEEecchhhhhhh----------cccCCCcchhhhe-eCCCCCcceEEecCC--
Confidence            456788998  9999999999999999999988654322          4678887888777 655 34445544443  


Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCC---E
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE---M  225 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~---~  225 (394)
                        .+|++||...+ +++.......+.| -+.|+|+|++++.++.|..|  .|.++.+........-.+.-+.|+.+   +
T Consensus        87 --k~ir~wd~r~~-k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F  162 (313)
T KOG1407|consen   87 --KTIRIWDIRSG-KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF  162 (313)
T ss_pred             --ceEEEEEeccC-cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence              49999999888 6666665544444 57899999999999999884  77777766655555556666777644   3


Q ss_pred             EEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--
Q 016134          226 LFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--  284 (394)
Q Consensus       226 l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--  284 (394)
                      +++.+..                 .|.....||.|+  |.+||+|+.|-.+.+||++..-|++.+..+.-+|..+.|+  
T Consensus       163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence            3333222                 799999999998  7999999999999999999999999999999999999999  


Q ss_pred             CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---------CeEEEEECC
Q 016134          285 DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---------NTVHLYELP  350 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---------g~I~iwd~~  350 (394)
                      |++||++|+|..|-|=+++++..+..+....     ..+.++|+|... +||-++.|         |.|+||-+.
T Consensus       243 g~~lASaSEDh~IDIA~vetGd~~~eI~~~~-----~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGDRVWEIPCEG-----PTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cceeeccCccceEEeEecccCCeEEEeeccC-----CceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence            9999999999999999999998877665322     223445799887 78777654         456666544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=1.7e-23  Score=188.13  Aligned_cols=232  Identities=19%  Similarity=0.291  Sum_probs=187.2

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      .+..+- |-+....++++.    .|..|++|++..+ .+.+.+|.|..++|+++.|.++++++++++.|+.  +|++...
T Consensus       177 ev~~v~-~l~~sdtlatgg----~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  177 EVHDVE-FLRNSDTLATGG----SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             ccceeE-EccCcchhhhcc----hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            444444 555545555554    4559999998544 3588899999999999999999999999999998  7999988


Q ss_pred             cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEE
Q 016134          205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL  282 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~  282 (394)
                      +...                     ++.+|+..|+++.|.  ...+++|+.|.+|++||+....|.+++- ..+.+..|.
T Consensus       252 r~~~---------------------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~  309 (459)
T KOG0288|consen  252 RLRH---------------------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIV  309 (459)
T ss_pred             hhhh---------------------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceE
Confidence            7652                     233788888888886  3449999999999999999988888765 456677887


Q ss_pred             EcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--
Q 016134          283 CWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--  360 (394)
Q Consensus       283 ~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--  360 (394)
                      .....++++-.|++|++||++...+......+. .+..+.+    ++++. -|++.+.|.++.+.|+++.+....+..  
T Consensus       310 ~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~l----s~~g~-~lLsssRDdtl~viDlRt~eI~~~~sA~g  383 (459)
T KOG0288|consen  310 CSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDL----SMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFSAEG  383 (459)
T ss_pred             ecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEee----ccCCe-EEeeecCCCceeeeecccccEEEEeeccc
Confidence            778889999999999999999988887776554 3444444    78888 566669999999999999988877765  


Q ss_pred             ---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          361 ---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       361 ---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                         .+..+.+.|+|++ |+++|+.||.|+||++.+.
T Consensus       384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             cccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence               5568999999999 9999999999999998765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2.7e-22  Score=174.04  Aligned_cols=234  Identities=16%  Similarity=0.183  Sum_probs=176.2

Q ss_pred             cceeeeccccc-cccccCCCeecCCCCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134          127 STSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE  202 (394)
Q Consensus       127 ~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~  202 (394)
                      -+|..++ |+| ...+++.++.+|    +||+|+++. +...-+....|.++|.+++|+.||..+++|+.|+.  +||+.
T Consensus        28 DsIS~l~-FSP~~~~~~~A~SWD~----tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   28 DSISALA-FSPQADNLLAAGSWDG----TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             cchheeE-eccccCceEEecccCC----ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            4788888 999 455555666666    999999976 32333566789999999999999999999999999  79999


Q ss_pred             CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCc
Q 016134          203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR----SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP  278 (394)
Q Consensus       203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~----~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v  278 (394)
                      +++...+.                      .|..+|.++.|-+    ..|++||.|++|+.||++...++.++. -.+.+
T Consensus       103 S~Q~~~v~----------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv  159 (347)
T KOG0647|consen  103 SGQVSQVA----------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV  159 (347)
T ss_pred             CCCeeeee----------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence            99877655                      4555666666641    368999999999999999999999887 45788


Q ss_pred             EEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce--eE
Q 016134          279 MSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--RG  356 (394)
Q Consensus       279 ~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--~~  356 (394)
                      +++.....+++.+..++.|.+|+++++..........-.-...++.  ...+.+ ..+.|+-+|.+.|..+..+..  -.
T Consensus       160 Ya~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va--~f~d~~-~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  160 YAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA--CFQDKD-GFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             eehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE--EEecCC-ceEeeeecceEEEEecCCCCccCce
Confidence            9888888999999999999999998764433322222222223332  234555 347799999999999887522  22


Q ss_pred             EEec----------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          357 RIFS----------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       357 ~~~~----------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .+..          -..|++|+|+|.. .|+|.+.||++.+||-+.
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            2221          1248889999976 999999999999999654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.90  E-value=1.9e-23  Score=191.25  Aligned_cols=224  Identities=21%  Similarity=0.337  Sum_probs=184.0

Q ss_pred             eEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCC-CcEE-EecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134          165 TMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIES-SAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-----  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~-~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-----  232 (394)
                      +.+.++.||+..|+++.|.| .+.+|++++.|+.  ||++-. +.++ .+.+|..+|.++.|+++  .++++++|     
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            66889999999999999999 8999999999999  699876 6666 67899999999999998  88888888     


Q ss_pred             -----------CC-CCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          233 -----------GH-TRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       233 -----------~h-~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                                 .| ...+.|+.|+   .+.+++|+.|+.|+.||+++++.++++..|-+.|..+.|.  +..+++.++|+
T Consensus       285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence                       22 3456788887   3789999999999999999999999999999999999998  88999999999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee---EEEec---CCcEEEEEE
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER---GRIFS---KHEVRVIEI  369 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~---~~~v~~l~~  369 (394)
                      +++||+.+.+-.++.+..... ....++  ..+|+++ ++++-+.|+.|.||.+...-..   ..+..   .+.-..+.|
T Consensus       365 s~riWe~~~~v~ik~i~~~~~-hsmP~~--~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEM-HTMPCL--TLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             cEEEEEcCCCccchhhcchhh-ccCcce--ecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            999999987766555443322 222222  2389998 9999999999999987643211   11111   445678899


Q ss_pred             CCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          370 GPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       370 sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +||| +|++|+.||.+.+||+.+-
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTT  464 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhh
Confidence            9999 9999999999999998763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2e-22  Score=184.88  Aligned_cols=229  Identities=16%  Similarity=0.209  Sum_probs=177.9

Q ss_pred             ceeeecccccccccc-CCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          128 TSKKTTLKNVCCHWL-LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~-~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      .|.++. |+|...+- |..+..     .+.|++..+. ....++.--++.|.++.|-.||++|+.|...|.  |+|+.+.
T Consensus        28 ~vssl~-fsp~~P~d~aVt~S~-----rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   28 SVSSLC-FSPKHPYDFAVTSSV-----RVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             cceeEe-cCCCCCCceEEeccc-----EEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            667777 77755442 222222     6888988765 566667778899999999999999999999998  6886553


Q ss_pred             cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEE
Q 016134          205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL  281 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l  281 (394)
                      ..++                     ...+|+.+|..+.|+   +..|++|+.|+.+++||+.+...+..+.+|++.|.+.
T Consensus       101 ~iLR---------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen  101 VILR---------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             HHHH---------------------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            3332                     222677777777776   5679999999999999999988777899999999999


Q ss_pred             EEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-eeEE
Q 016134          282 LCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-ERGR  357 (394)
Q Consensus       282 ~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-~~~~  357 (394)
                      ++.   +.+++||+.||+|++||++..........|..++..+.    +-|.|. ++++++ .+.|+|||+.++. ++..
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl----~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL----ALPSGS-LIASAG-GNSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE----EcCCCC-EEEEcC-CCeEEEEEecCCceehhh
Confidence            998   45899999999999999998754444445555554443    468888 788776 4689999999664 4444


Q ss_pred             Ee-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          358 IF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       358 ~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +. |...|+|+++..++ .|++++-|+.|++||+.
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             hhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            44 56789999999999 99999999999999964

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=9.9e-23  Score=192.47  Aligned_cols=278  Identities=17%  Similarity=0.229  Sum_probs=206.1

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-  164 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-  164 (394)
                      ++.||+-|.+|++|+.....-....      .+..-..-|.-.|..+. ..-.+.    ...+.+.|-+|++|+..... 
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~------~~~asme~HsDWVNDii-L~~~~~----tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPST------PYIASMEHHSDWVNDII-LCGNGK----TLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             eEEecCCCceEEEeccccccCCccc------chhhhhhhhHhHHhhHH-hhcCCC----ceEEecCCceEEEeecccCcc
Confidence            3788999999999998754321000      01111223333444443 222232    23344556699999996553 


Q ss_pred             eEEEEecccCCCeEEEEe-cCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC-CCCCCEEE
Q 016134          165 TMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD-GHTRPVTC  240 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~-s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~-~h~~~V~~  240 (394)
                      -++.++..|++.|.||+. .++..++|||+-|+.  |||++++.......           .+.+-+.+.. ++...|.+
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-----------~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-----------FNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-----------ccccccccCCCCCccceee
Confidence            678889999999999999 888999999999999  69999884411000           0001111111 78889999


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE  316 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  316 (394)
                      ++.+  +..|++|+..+.+++||.++.+.+..+.+|+..|..+..+  |..+++++.|++|++||+..++++.++..|.+
T Consensus       177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            9998  4589999999999999999999999999999999999988  88999999999999999999999999888887


Q ss_pred             CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       317 ~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .+..+..    +|+=. .+.+|+.|+.|..=|+++......+ ..+++|..+..+... -+..+..|+.|+-|.+.
T Consensus       257 ~VWaL~~----~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  257 GVWALQS----SPSFT-HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             ceEEEee----CCCcc-eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            6433333    56666 8999999999999999996444444 347788888877554 56888889999999765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=2.5e-22  Score=191.30  Aligned_cols=281  Identities=17%  Similarity=0.203  Sum_probs=208.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCC--CCCCCCCc--------cc---------------cccCCCCccceeeeccccc
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTG--PKNSSSAS--------ST---------------VSDESGDKSTSKKTTLKNV  137 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~--~~~s~~~~--------~~---------------~~~~~g~~~~v~~~~~~~~  137 (394)
                      |.+-++|.|.|.|||+||++....+.  +.+-.++.        ..               ..-..+.+.-+++++ .+|
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~-vSp  469 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA-VSP  469 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE-ECC
Confidence            45557899999999999999733211  00111110        00               001224456788998 999


Q ss_pred             cccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC---CCCEEEEEeCCCc--eeecCCCcEEEecCC
Q 016134          138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--AWNIESSAEFSLDGP  212 (394)
Q Consensus       138 ~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~  212 (394)
                      +++++|+    |+.+|.|||+++.+- +....+++|...|.|+.|+.   ..++||+++.|..  |+|+...        
T Consensus       470 ~gqhLAs----GDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------  536 (1080)
T KOG1408|consen  470 DGQHLAS----GDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------  536 (1080)
T ss_pred             Ccceecc----cCccCceEEEEehhh-hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------
Confidence            9999984    566669999999765 77788899999999999975   3588999999998  4665433        


Q ss_pred             CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--C--CeEEEEeCCCeEEEEeCCCCceeEEEcCC-----CCCcEEEEE
Q 016134          213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--R--SRLCSGSMDNTIRVWELDTLEPVMTLNDH-----TDAPMSLLC  283 (394)
Q Consensus       213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-----~~~v~~l~~  283 (394)
                                  +.+..+.++|...|+++.|-  +  ..+++++.|+.|..--.+.......|..|     ...++.++.
T Consensus       537 ------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V  604 (1080)
T KOG1408|consen  537 ------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV  604 (1080)
T ss_pred             ------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence                        22334667999999999995  2  46899999998764333221112222222     245677777


Q ss_pred             c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134          284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-  360 (394)
Q Consensus       284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-  360 (394)
                      .  .+++++++.|+.|+|||+.+++..+.+.+.......+ +.+..+|.|- +|++.+.|.++.++|.-+++++.++.+ 
T Consensus       605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l-IKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GH  682 (1080)
T KOG1408|consen  605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL-IKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGH  682 (1080)
T ss_pred             CCCcceEEEEecccceEEEeccccceeeeecccccCCCce-EEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCc
Confidence            7  6899999999999999999999998888755442221 2334589998 999999999999999999999988876 


Q ss_pred             CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..-|+.+.|.+|- .|++.+.||+|.||.+..
T Consensus       683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chheeeeeecccchhheeecCCceEEEEECch
Confidence            5569999999998 999999999999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1e-20  Score=158.09  Aligned_cols=226  Identities=19%  Similarity=0.259  Sum_probs=181.2

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--------eeecCCCcE----------EEecCCCCcEEEEEEcCC-
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--------AWNIESSAE----------FSLDGPVGEVYSMVVANE-  224 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~~----------~~~~~~~~~v~~l~~~~~-  224 (394)
                      ++.+.++. .+..|.+++|+|.|.+.+.|+...+        +-|++.+..          .+...|.+.|++.+|++. 
T Consensus        23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence            45555554 4678999999999999999998887        344433221          134568899999999998 


Q ss_pred             -EEEEEecC-----------------------CCCCCEEEEEec------CCeEEEEe-CCCeEEEEeCCCCceeEEEcC
Q 016134          225 -MLFAGAQD-----------------------GHTRPVTCLAVG------RSRLCSGS-MDNTIRVWELDTLEPVMTLND  273 (394)
Q Consensus       225 -~l~~~~~~-----------------------~h~~~V~~l~~~------~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~  273 (394)
                       .+++|+.|                       -|.+.|..++|-      +.+|++++ .|..|.+=|..+++..+.+.+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG  181 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence             78888877                       588999999993      34677665 477888889999999999999


Q ss_pred             CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc---eEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          274 HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG---VLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       274 h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      |++-|.++--+ +-++++++.|.+|++||++-..++..+........   .....++.+|.|+ +|++|-.|....+||+
T Consensus       182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDI  260 (350)
T ss_pred             CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEe
Confidence            99999988544 88999999999999999998888777654322211   1222345699999 9999999999999999


Q ss_pred             CCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          350 PSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       350 ~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +.+..++.+.. ...|+++.|+|.. ++++++.|..|++=|++-
T Consensus       261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            99998887754 7789999999998 999999999999998864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=8.6e-21  Score=165.96  Aligned_cols=227  Identities=15%  Similarity=0.195  Sum_probs=169.7

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEec-------
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQ-------  231 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~-------  231 (394)
                      +++.+.+..-...|++|.|+++|.+|++++.|.+  |+|..+++.+ .+....-.+..+.|...  .++.++.       
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            3555666667889999999999999999999977  6999998877 34444444555555332  3333322       


Q ss_pred             -------------CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCc
Q 016134          232 -------------DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHT  296 (394)
Q Consensus       232 -------------~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~  296 (394)
                                   .||...|++|+.+  ++.+++++.|++|++||++..++...+.....+|.+....|-++|++.....
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCe
Confidence                         2999999999998  6899999999999999999988887776555565555544788888887779


Q ss_pred             EEEEEeCCC--ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCc-EEEEEEC
Q 016134          297 IKVWFATGR--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHE-VRVIEIG  370 (394)
Q Consensus       297 i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~-v~~l~~s  370 (394)
                      |++||+|.-  .+...+.... ....-.-.+.|+|+|+ +|+.+...+.+++.|.-+|..+..+..   ... -....|.
T Consensus       164 IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  164 IKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             EEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            999999863  3333333321 1222222345899999 666677889999999999988777765   221 3567899


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCC
Q 016134          371 PDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       371 p~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ||+ .+++|+.||+|.+|++++.
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCC
Confidence            999 9999999999999999765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.1e-22  Score=180.18  Aligned_cols=255  Identities=15%  Similarity=0.215  Sum_probs=183.6

Q ss_pred             CCCCccceeeeccccccc-cccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--
Q 016134          122 ESGDKSTSKKTTLKNVCC-HWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--  198 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--  198 (394)
                      +.||..-|.+++ -+|.. .-++    +|+-||.|+|||+.+. +++.+++.|.+.|..|++..  ..+++++.|.+|  
T Consensus        62 L~gHrdGV~~la-khp~~ls~~a----SGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   62 LDGHRDGVSCLA-KHPNKLSTVA----SGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccccccccchhh-cCcchhhhhh----ccccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            468887888887 66654 3344    4555559999999876 88999999999999999987  789999999984  


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcC--CEEEEEecC------CC----------CCCEEEEEec---CCeEEEEeCCCeE
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVAN--EMLFAGAQD------GH----------TRPVTCLAVG---RSRLCSGSMDNTI  257 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~~------~h----------~~~V~~l~~~---~~~l~sgs~Dg~V  257 (394)
                      |.++... .........+..+.-..  +.+++++.+      .+          ...|.++.|+   .+.|+++.+|+.|
T Consensus       134 wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  134 WKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             eeccCCc-ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            8866532 11111112222222211  133333322      22          3455666666   3679999999999


Q ss_pred             EEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcE
Q 016134          258 RVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       258 ~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      .|||+++.++++.+. ....-..++|+  .-.|+++++|..+..||++.-.. +.....|    ....+.+.|+|.|+ -
T Consensus       213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh----vsAV~dVdfsptG~-E  286 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH----VSAVMDVDFSPTGQ-E  286 (433)
T ss_pred             EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccc----ceeEEEeccCCCcc-h
Confidence            999999999887765 33455778888  45788899999999999986432 3333333    22334567899999 8


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          335 LICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +++|+.|.+|+||.+..+.....+..  .+.|.++.|+-|. ++++||.|+.|++|....
T Consensus       287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            99999999999999998755444333  5679999999999 999999999999998654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.7e-22  Score=180.54  Aligned_cols=261  Identities=22%  Similarity=0.317  Sum_probs=190.1

Q ss_pred             cccCCCCCc-ccccccCCCCCCCCCCCCCCccccccCCCC-ccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           87 VSSGSEDRI-PHVRNRENPGYTGPKNSSSASSTVSDESGD-KSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        87 ~~s~s~d~~-~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      +.+.|.|.. +.+||+.|+...-            ..+|. .-.-.+.  --....|++++.....   .|++|.+....
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~~------------~ykg~~~a~~~sl--~~l~~~yllsaq~~rp---~l~vw~i~k~~   72 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSLL------------QYKGSYLAQAASL--TALNNEYLLSAQLKRP---LLHVWEILKKD   72 (476)
T ss_pred             EeccCCCCcceeEEecCCCceeE------------EecCcccccchhh--hhhchhheeeecccCc---cccccccCchh
Confidence            456677766 9999999987421            01111 1000011  1111244444333332   89999987653


Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      +.. ...--.++|.+++-+|+|.+|+.|+..+.  +|.+.+|..+..                     .+.|-..|+|+.
T Consensus        73 ~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---------------------~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   73 QVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---------------------LSAHYQSITCLK  130 (476)
T ss_pred             hhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---------------------HHhhccceeEEE
Confidence            333 23335688999999999999999988887  699999998742                     227888999999


Q ss_pred             ec--CCeEEEEeCCCeEEEEeCC---------CCceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCce
Q 016134          243 VG--RSRLCSGSMDNTIRVWELD---------TLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg~V~iwd~~---------~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      |+  +.+|++|+.||.|.+|++-         +-++++.|..|.-+|+++...    ..+|+|+|.|.++++||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            97  7899999999999999873         346788999999999999987    36899999999999999998877


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc----------------eeEEEec-C--CcEEEEE
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM----------------ERGRIFS-K--HEVRVIE  368 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~----------------~~~~~~~-~--~~v~~l~  368 (394)
                      +..+... .....+++    +|-+. .+.+|+.+|.|.+.++....                .+..+.+ .  ..|+|++
T Consensus       211 Llti~fp-~si~av~l----Dpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa  284 (476)
T KOG0646|consen  211 LLTITFP-SSIKAVAL----DPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA  284 (476)
T ss_pred             eEEEecC-CcceeEEE----ccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence            6665432 22344444    88887 88889999999998875432                1111222 2  4799999


Q ss_pred             ECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          369 IGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       369 ~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++-|| +|++|+.||.|+|||+.++
T Consensus       285 is~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  285 ISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             EecCccEEEeeCCCCCEEEEecchH
Confidence            99999 9999999999999998764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=5.5e-22  Score=173.54  Aligned_cols=218  Identities=23%  Similarity=0.284  Sum_probs=184.1

Q ss_pred             ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE---------EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134          172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF---------SLDGPVGEVYSMVVANE--MLFAGAQD------  232 (394)
Q Consensus       172 ~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~---------~~~~~~~~v~~l~~~~~--~l~~~~~~------  232 (394)
                      +.+..+.|..|+|||++|++|+.||.  ||+..+|+..         .+.-++.+|.++.|+.|  ++++|+.|      
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45677899999999999999999998  6999988753         24457789999999998  88888887      


Q ss_pred             -------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          233 -------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       233 -------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                                   .|+..|+|+.|+  +..+++++.|.++||.-+++|++++.|.+|++.|+...|.  |..+++++.||
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence                         699999999998  6789999999999999999999999999999999999998  88999999999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECC
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGP  371 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp  371 (394)
                      +|++|+..+.+++.++........+..+.  .-|.+...++++...++|+|.++. ++.+..+..    .+...+...+|
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~--~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSp  447 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVI--LLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSP  447 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEE--EcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecC
Confidence            99999999999998887766554444432  345555578888889999999987 455555544    34466677999


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCC
Q 016134          372 DK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       372 ~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .| .+.+.++|+.++.|.+.+.
T Consensus       448 kGewiYcigED~vlYCF~~~sG  469 (508)
T KOG0275|consen  448 KGEWIYCIGEDGVLYCFSVLSG  469 (508)
T ss_pred             CCcEEEEEccCcEEEEEEeecC
Confidence            99 9999999999999987654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=170.87  Aligned_cols=258  Identities=14%  Similarity=0.179  Sum_probs=194.8

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE  206 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~  206 (394)
                      ..+.. |+++|.++|.+|.+|    .|-|||..+- ...+.+.+|..+|++++|+++|++|+|+|.|..  +||+..+..
T Consensus        26 a~~~~-Fs~~G~~lAvGc~nG----~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQ-FSRWGDYLAVGCANG----RVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEE-eccCcceeeeeccCC----cEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            45566 999999999999999    8999999875 788899999999999999999999999999998  599999998


Q ss_pred             EEecCCCCcEEEEEEcCC--EEEEEe-cC---------------------CCCCCE-EEEEec--CCeEEEEeCCCeEEE
Q 016134          207 FSLDGPVGEVYSMVVANE--MLFAGA-QD---------------------GHTRPV-TCLAVG--RSRLCSGSMDNTIRV  259 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~--~l~~~~-~~---------------------~h~~~V-~~l~~~--~~~l~sgs~Dg~V~i  259 (394)
                      +.......+|....|+|.  ..++++ .+                     +..+.+ .+..|+  |+++++|...|.+.+
T Consensus       100 l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  100 LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence            877777888888888875  222222 21                     111111 111244  789999999999999


Q ss_pred             EeCCCCceeEEEcCCC-CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc------eeeEeecccCCcceEE-EEeeECC
Q 016134          260 WELDTLEPVMTLNDHT-DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG------NLEAAYTHKEDNGVLA-LGGLNDP  329 (394)
Q Consensus       260 wd~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~-~~~~~s~  329 (394)
                      +|..+.+++..++-.+ ..|..+.+.  +.+|+.-+.|+.||.|+++.-.      .+........-+.... -+++|+.
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~  259 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG  259 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence            9999999999887655 778888888  8999999999999999986311      1110011111111111 1345789


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEEEec-C-CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          330 DGKPVLICACNDNTVHLYELPSFMERGRIFS-K-HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~-~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +|.+++++......++||.-..|.++..+.+ + .....+.|+|-. .+++- ..|.|++|.....+
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence            9995555555567899999999999988877 3 458889999998 55555 88999999876543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.89  E-value=7.3e-22  Score=167.20  Aligned_cols=219  Identities=21%  Similarity=0.324  Sum_probs=186.6

Q ss_pred             EEecccCCCeEEEEecC---CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------
Q 016134          168 AKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------  232 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------  232 (394)
                      .+..||+.+|..++|+|   +|-+|++++.|+.  +-+-+++..+ .+.+|.+.|....+..+  ..+++..|       
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            45689999999999985   8899999999998  6777788877 88999999999988877  44444444       


Q ss_pred             ----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134          233 ----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTI  297 (394)
Q Consensus       233 ----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i  297 (394)
                                .|..-|.+++|+  .++|++|+.++.+||||++..+ +...+.+|++.|..+.|.  ++.|++.+.|++|
T Consensus        88 a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV  167 (334)
T KOG0278|consen   88 AVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV  167 (334)
T ss_pred             hhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence                      688899999998  5789999999999999998654 567788999999999998  7789999999999


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEE
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~  376 (394)
                      |+||.++++.++.+... .++..+.+    +++|. +| +-...+.|.+||..+...+..+.....|.+...+|+. .++
T Consensus       168 RLWD~rTgt~v~sL~~~-s~VtSlEv----s~dG~-il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  168 RLWDHRTGTEVQSLEFN-SPVTSLEV----SQDGR-IL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV  240 (334)
T ss_pred             EEEEeccCcEEEEEecC-CCCcceee----ccCCC-EE-EEecCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence            99999999988887653 33454544    88998 44 4456789999999999999999999999999999998 999


Q ss_pred             EEeCCCeEEEEeCCCCC
Q 016134          377 TGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       377 tgs~Dg~I~vWd~~~~~  393 (394)
                      +|++|..++.||..+..
T Consensus       241 aGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             ecCcceEEEEEeccCCc
Confidence            99999999999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=5.3e-21  Score=182.02  Aligned_cols=309  Identities=20%  Similarity=0.210  Sum_probs=221.5

Q ss_pred             CCCcccc-cccccccccCCCCCcccccccCCCCCCC---CCCCCCCc----------------cccccCCCCccceeeec
Q 016134           74 SPPSYNR-LKNNLWVSSGSEDRIPHVRNRENPGYTG---PKNSSSAS----------------STVSDESGDKSTSKKTT  133 (394)
Q Consensus        74 ~~~~~~~-~~~~~~~~s~s~d~~~~~w~~~~~~~~~---~~~s~~~~----------------~~~~~~~g~~~~v~~~~  133 (394)
                      +..+++. ..+...++|+|+|++||||++.-....+   ...+.+..                +...-..||...|.++.
T Consensus       195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~  274 (764)
T KOG1063|consen  195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW  274 (764)
T ss_pred             hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence            4455555 3356688999999999999987544211   00011110                11123459999999999


Q ss_pred             cccccccccCCCeecCCCCCeEEEEEcCCC---c----------------------------------------------
Q 016134          134 LKNVCCHWLLGNCVRGDECRFLHSWFCGEG---L----------------------------------------------  164 (394)
Q Consensus       134 ~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---~----------------------------------------------  164 (394)
                       |+|.+.-|.+++.|.    ++.||...+.   +                                              
T Consensus       275 -W~p~~~~LLSASaDk----smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~  349 (764)
T KOG1063|consen  275 -WHPEGLDLLSASADK----SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT  349 (764)
T ss_pred             -EccchhhheecccCc----ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence             999998877777766    7888876433   0                                              


Q ss_pred             --eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e---eecCCCcE---E-EecCCCCcEEEEEEcC-C-EEEEEec
Q 016134          165 --TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A---WNIESSAE---F-SLDGPVGEVYSMVVAN-E-MLFAGAQ  231 (394)
Q Consensus       165 --~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v---Wd~~~~~~---~-~~~~~~~~v~~l~~~~-~-~l~~~~~  231 (394)
                        .+.....||.+.|.+++|+|.|++|+|.|.|.+  |   |  .....   + +-.-|.-.+.++++-+ + .+++|..
T Consensus       350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w--g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd  427 (764)
T KOG1063|consen  350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW--GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD  427 (764)
T ss_pred             ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc--ccccceeeecccccccccceeeehccCCceeeeccc
Confidence              011122467888888888888888888888887  3   4  11111   1 2233445566666666 4 3333332


Q ss_pred             C-------------------------------------------------------------------------------
Q 016134          232 D-------------------------------------------------------------------------------  232 (394)
Q Consensus       232 ~-------------------------------------------------------------------------------  232 (394)
                      +                                                                               
T Consensus       428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence            2                                                                               


Q ss_pred             ---------------CCCCCEEEEEec--CCeEEEEeCCC-----eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEE
Q 016134          233 ---------------GHTRPVTCLAVG--RSRLCSGSMDN-----TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFL  288 (394)
Q Consensus       233 ---------------~h~~~V~~l~~~--~~~l~sgs~Dg-----~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l  288 (394)
                                     ||.-+|.+++.+  ++++|+++...     -|++|+..+...++.+.+|+-.|+.+.|+  +.+|
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence                           899999999998  78999988644     69999999999999999999999999999  8999


Q ss_pred             EEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC--ceeEE---EecCCc
Q 016134          289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF--MERGR---IFSKHE  363 (394)
Q Consensus       289 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~--~~~~~---~~~~~~  363 (394)
                      ++.+.|+++.+|..........-+.....+..+.+.+.|+|++. +++|++.|.+|++|.....  +.+..   +.....
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~a  666 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLA  666 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCc
Confidence            99999999999987544333222223344566777888999999 7999999999999999887  33333   333678


Q ss_pred             EEEEEECCC-----C-EEEEEeCCCeEEEEeCC
Q 016134          364 VRVIEIGPD-----K-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       364 v~~l~~sp~-----~-~l~tgs~Dg~I~vWd~~  390 (394)
                      |+++++.|-     + .++.|-+.|.|.+|...
T Consensus       667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            999999873     2 77889999999999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=4.6e-21  Score=182.77  Aligned_cols=132  Identities=6%  Similarity=-0.039  Sum_probs=88.2

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR  153 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~  153 (394)
                      ++++-.+  .++. ...-+.-++-++|++.-....            -..-+.+++++++ |++||.|++++-.  +...
T Consensus        41 ~gLa~~p--~Sgl-~aYpAGCvVVlfn~~~~tQ~h------------lvnssRk~~t~vA-fS~~GryvatGEc--G~~p  102 (1080)
T KOG1408|consen   41 NGLASVP--CSGL-CAYPAGCVVVLFNVDSCTQSH------------LVNSSRKPLTCVA-FSQNGRYVATGEC--GRTP  102 (1080)
T ss_pred             Ccccccc--cccc-eeeccCcEEEEEcccccchhh------------eecccCcceeEEE-EcCCCcEEEeccc--CCCc
Confidence            3444443  3333 335667888899988544211            1334556999999 9999999997652  1334


Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      .++||++... ..+.+|..|+-.|+|++|+|.++++++.+....    +||++.+....-......|..++|+.+
T Consensus       103 a~kVw~la~h-~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEd  176 (1080)
T KOG1408|consen  103 ASKVWSLAFH-GVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSED  176 (1080)
T ss_pred             cceeeeeccc-cchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccC
Confidence            7999999876 578999999999999999999999998876554    355544333322223333444444444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=8.3e-22  Score=186.27  Aligned_cols=229  Identities=23%  Similarity=0.359  Sum_probs=186.9

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCce-----EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLT-----MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF  207 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~-----~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~  207 (394)
                      ..|.++|+.    +|+.|+.|++|+......     .+..++.|.+.|++++...+++.|+|+|.|-+  +|+...+...
T Consensus        33 da~~~ryLf----TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   33 DAPNGRYLF----TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             cCCCCceEE----ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            334555555    455566999999853322     47888999999999999999999999999999  5998876421


Q ss_pred             EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe-c--CCeEEEEeCCCeEEEEeCCCC--ceeE--------EEc-C
Q 016134          208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV-G--RSRLCSGSMDNTIRVWELDTL--EPVM--------TLN-D  273 (394)
Q Consensus       208 ~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~-~--~~~l~sgs~Dg~V~iwd~~~~--~~~~--------~~~-~  273 (394)
                      .+.                   +...|...|.||++ .  ..++|+|+.|+.|.|||+.++  +.+.        .+. +
T Consensus       109 c~s-------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG  169 (735)
T KOG0308|consen  109 CMS-------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG  169 (735)
T ss_pred             hHh-------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence            110                   22278889999988 3  678999999999999999976  2222        233 6


Q ss_pred             CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          274 HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       274 h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      +...|++++..  +..|++|+..+.|++||.++.+.+..+.+|...+.++-+    ++||. .+++++.||+|++||+..
T Consensus       170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~----~dDGt-~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV----NDDGT-RLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE----cCCCC-eEeecCCCceEEeeeccc
Confidence            78899999988  558999999999999999999999999999887777766    88998 899999999999999999


Q ss_pred             CceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          352 FMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       352 ~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .+++.++.. ...|+++..+|+- .+.+|+.||.|..=|+..
T Consensus       245 QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  245 QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            988887654 6679999999887 999999999999888765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=1e-20  Score=188.57  Aligned_cols=261  Identities=20%  Similarity=0.236  Sum_probs=196.5

Q ss_pred             cCCCCccceeeeccccccccccCCCe--ecCCCCCeEEEEEcCC-----------CceEEEEecccCCCeEEEEecCCCC
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNC--VRGDECRFLHSWFCGE-----------GLTMLAKLEGHEKAVSGIALPLRSD  187 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~--~~g~~~~~i~iWd~~~-----------~~~~~~~l~~h~~~V~~l~~s~~~~  187 (394)
                      |..-+...|.++. .+|++.-+|++.  .+|    .++||+...           -.+.+.++..|.+.|+|+.|+|||+
T Consensus         8 wv~H~~~~IfSId-v~pdg~~~aTgGq~~d~----~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~   82 (942)
T KOG0973|consen    8 WVNHNEKSIFSID-VHPDGVKFATGGQVLDG----GIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS   82 (942)
T ss_pred             ccccCCeeEEEEE-ecCCceeEecCCccccc----cceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence            5554556788888 899999998876  555    677998641           1245677788999999999999999


Q ss_pred             EEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134          188 KLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       188 ~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~  263 (394)
                      +||+|+.|+.  ||...........+..+....+   ...-......+|...|..++|+  +.+|++++.|++|.|||.+
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~v---E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNV---ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             eEeeccCcceEEEeeecccCCccccccccccccc---ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence            9999999998  6987741111111111110000   0122333444899999999998  7899999999999999999


Q ss_pred             CCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC--cceEEEEeeECCCCCcEEEEEe
Q 016134          264 TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDGKPVLICAC  339 (394)
Q Consensus       264 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~~l~sgs  339 (394)
                      +.+++..+++|.+.|..+.|+  |++|++-+.|++|++|++.+....+.+..+.+.  ....-....|+|||+ +|++..
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~n  238 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPN  238 (942)
T ss_pred             cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecchh
Confidence            999999999999999999999  999999999999999998776666665554432  233444567899999 777652


Q ss_pred             ----CCCeEEEEECCCCceeEEEe-cCCcEEEEEECCC------C------------EEEEEeCCCeEEEEeCC
Q 016134          340 ----NDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPD------K------------LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       340 ----~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~------~------------~l~tgs~Dg~I~vWd~~  390 (394)
                          .-.++.|.+-.+.+.-..+. |..++.+++|+|.      .            .+|+|+.|++|.||...
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~  312 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA  312 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence                23578898888877555554 4778999999981      1            57899999999999864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=163.91  Aligned_cols=243  Identities=14%  Similarity=0.186  Sum_probs=187.2

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccc--ccCCCeecCCCCCeEEEEEc
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH--WLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~i~iWd~  160 (394)
                      ++.+++|||.|.+|||||+......+            ....|...|+++. |.++..  ++.    ++..||.|-+|+.
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~qlg------------~ll~HagsitaL~-F~~~~S~shLl----S~sdDG~i~iw~~  114 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQLG------------ILLSHAGSITALK-FYPPLSKSHLL----SGSDDGHIIIWRV  114 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhhhc------------ceeccccceEEEE-ecCCcchhhee----eecCCCcEEEEEc
Confidence            56688999999999999999877554            4566777889888 776654  555    4455559999998


Q ss_pred             CCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       161 ~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      .. ++++..+++|++.|+.|+.+|.+++-++.+.|+.  +||+-.++.-.....                    .+... 
T Consensus       115 ~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--------------------~~~at-  172 (362)
T KOG0294|consen  115 GS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--------------------KNKAT-  172 (362)
T ss_pred             CC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--------------------CCcce-
Confidence            76 4999999999999999999999999999999999  599988875321111                    12222 


Q ss_pred             EEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          239 TCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                       -+.|+  +++++.+..+ .|-||.+.+-.....+.. ...+.++.|. +..|++|..|+.|++||.....+...+..|.
T Consensus       173 -~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~  249 (362)
T KOG0294|consen  173 -LVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHE  249 (362)
T ss_pred             -eeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecch
Confidence             25675  6778777765 589999988776665553 3567888887 8899999999999999999888888888888


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-----ceeEEEecCCcEEEEEEC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-----MERGRIFSKHEVRVIEIG  370 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~~~~v~~l~~s  370 (394)
                      ..+..+.  ..-.|++. +|++++.||.|+|||++..     +++..+.....++|+...
T Consensus       250 ~RVK~i~--~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  250 NRVKDIA--SYTNPEHE-YLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK  306 (362)
T ss_pred             hheeeeE--EEecCCce-EEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence            6655443  23477776 9999999999999999876     445555556667777654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.1e-21  Score=176.27  Aligned_cols=251  Identities=18%  Similarity=0.244  Sum_probs=191.4

Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEE
Q 016134           88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTML  167 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~  167 (394)
                      ++-.....+++|++........            ..--+..|.+++ -+|++.|++.+...|    .|++|.+.+| .++
T Consensus        55 saq~~rp~l~vw~i~k~~~~~q------------~~v~Pg~v~al~-s~n~G~~l~ag~i~g----~lYlWelssG-~LL  116 (476)
T KOG0646|consen   55 SAQLKRPLLHVWEILKKDQVVQ------------YIVLPGPVHALA-SSNLGYFLLAGTISG----NLYLWELSSG-ILL  116 (476)
T ss_pred             eecccCccccccccCchhhhhh------------hcccccceeeee-cCCCceEEEeecccC----cEEEEEeccc-cHH
Confidence            3444477889999875543210            111224678888 999999999888887    8999999999 889


Q ss_pred             EEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134          168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-  244 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-  244 (394)
                      ..+.+|-.+|++|.|+-|+.+|+|||.||.  +|++..--... ..+  .         ......+..|+-+|+++... 
T Consensus       117 ~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~-~~~--~---------~~p~~~f~~HtlsITDl~ig~  184 (476)
T KOG0646|consen  117 NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD-NDH--S---------VKPLHIFSDHTLSITDLQIGS  184 (476)
T ss_pred             HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc-cCC--C---------ccceeeeccCcceeEEEEecC
Confidence            999999999999999999999999999999  58864321110 000  0         00111334899999999986 


Q ss_pred             ---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc-------------
Q 016134          245 ---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG-------------  306 (394)
Q Consensus       245 ---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~-------------  306 (394)
                         ..+|+++|.|.++++||+..+..+.++. ....+.+++.+  +..++.|+++|.|.+.++....             
T Consensus       185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~  263 (476)
T KOG0646|consen  185 GGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE  263 (476)
T ss_pred             CCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence               3589999999999999999999988876 56788999988  7889999999999998875422             


Q ss_pred             ---eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCC
Q 016134          307 ---NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPD  372 (394)
Q Consensus       307 ---~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~  372 (394)
                         ....+.+|.....+.++.  .+-||. +|++|+.||.|.|||+.+.+.+.++. ..++|+.+.+.|=
T Consensus       264 ~~t~~~~~~Gh~~~~~ITcLa--is~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  264 ENTQINVLVGHENESAITCLA--ISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ccceeeeeccccCCcceeEEE--EecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence               233445555533344443  477898 99999999999999999999988888 4888999998653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.5e-20  Score=162.74  Aligned_cols=231  Identities=16%  Similarity=0.233  Sum_probs=171.7

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCC--EEEEEeCCCc--ee
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT--AW  199 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~l~sgs~Dg~--vW  199 (394)
                      .|...+++++   +.+.|+++++.    |-+|+|||.... ..+..+..|.+.|+++.|.+.-.  .|++|+.||.  +|
T Consensus        41 aH~~sitavA---Vs~~~~aSGss----DetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   41 AHAGSITALA---VSGPYVASGSS----DETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccceeEEE---ecceeEeccCC----CCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            5667787777   34667775554    449999999887 66788889999999999988664  8999999999  59


Q ss_pred             ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Q 016134          200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA  277 (394)
Q Consensus       200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~  277 (394)
                      +...-.++.                     +..+|...|+.|+.+  +.+.++.+.|+.+++||+-+++.-..+.- ...
T Consensus       113 ~~~~W~~~~---------------------slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~  170 (362)
T KOG0294|consen  113 RVGSWELLK---------------------SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK  170 (362)
T ss_pred             EcCCeEEee---------------------eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence            987665542                     344777778888886  67888999999999999988876554442 223


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      .+.+.|+  |.+++....+ .|-+|.+.+......+...   ....+.  .|. ++. .|++|.+|+.|.+||..+..+.
T Consensus       171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~--~~l-~~~-~L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---KRILCA--TFL-DGS-ELLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---ccceee--eec-CCc-eEEEecCCceEEEeccCCCccc
Confidence            3447777  7888877764 6889988765544433322   223333  232 344 7889999999999999987766


Q ss_pred             EEEec-CCcEEEEEEC--CCC-EEEEEeCCCeEEEEeCCCC
Q 016134          356 GRIFS-KHEVRVIEIG--PDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ~~~~~-~~~v~~l~~s--p~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.. ...|-.+.+-  |++ +|+|++.||.|+|||++.+
T Consensus       243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            66554 6778888743  445 9999999999999999876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.7e-19  Score=166.76  Aligned_cols=264  Identities=15%  Similarity=0.083  Sum_probs=178.5

Q ss_pred             cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE
Q 016134           87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM  166 (394)
Q Consensus        87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~  166 (394)
                      ++|++.|+.+++||++++.....           . .++. .+..+. ++|++..+...   +..++.|++||..++ +.
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~~~~-----------~-~~~~-~~~~l~-~~~dg~~l~~~---~~~~~~v~~~d~~~~-~~   65 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEVTRT-----------F-PVGQ-RPRGIT-LSKDGKLLYVC---ASDSDTIQVIDLATG-EV   65 (300)
T ss_pred             EEEecCCCEEEEEECCCCceEEE-----------E-ECCC-CCCceE-ECCCCCEEEEE---ECCCCeEEEEECCCC-cE
Confidence            56788899999999988764321           1 1121 244566 88888765322   123558999999876 55


Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEE-eCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSG-SRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      +..+..+.. +..++|+|+++.|+++ +.|+.  +||+++.+.+.....                      ...+.+++|
T Consensus        66 ~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----------------------~~~~~~~~~  122 (300)
T TIGR03866        66 IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----------------------GVEPEGMAV  122 (300)
T ss_pred             EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----------------------CCCcceEEE
Confidence            666665544 5678999999987655 45666  699988765432111                      122345666


Q ss_pred             c--CCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          244 G--RSRLCSGSMDN-TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       244 ~--~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      +  +.++++++.++ .+.+||.++++.+..+.. ...+..+.|+  +++|+ ++..++.|++||+++++.+..+......
T Consensus       123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~  201 (300)
T TIGR03866       123 SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG  201 (300)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc
Confidence            5  56777777664 577889988877665542 2345677777  66665 4456999999999988766554422111


Q ss_pred             ---cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE-eCCCeEEEEeCCCC
Q 016134          318 ---NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG-DGAGMLGVWKLLAK  392 (394)
Q Consensus       318 ---~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg-s~Dg~I~vWd~~~~  392 (394)
                         .........++|+++.++++...++.|.+||+.+++....+...+.+.+++|+|++ +|+++ ..++.|++||+.+.
T Consensus       202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence               11112233479999954555566778999999988877666666789999999999 77765 56899999999865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=3.4e-21  Score=177.73  Aligned_cols=222  Identities=19%  Similarity=0.300  Sum_probs=166.4

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE------EecCCCCcEEEEEEcCC--EEEEEecC----
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF------SLDGPVGEVYSMVVANE--MLFAGAQD----  232 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~------~~~~~~~~v~~l~~~~~--~l~~~~~~----  232 (394)
                      -..+++|+..|.++++.|.|.+|+||+.|-+  +||++.....      .......+|.++.|++.  .+++.+..    
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            4567899999999999999999999999999  5999764432      12334557889999886  44444332    


Q ss_pred             --------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc-eeEEEc-----CCCCC
Q 016134          233 --------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE-PVMTLN-----DHTDA  277 (394)
Q Consensus       233 --------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~-----~h~~~  277 (394)
                                                ||...++|.+|+   .+.|++++.||++||||+...+ .++.|+     +-.-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence                                      899999999998   4679999999999999997644 233332     23346


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee---eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL---EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      +++++|+  +++||+|+.||.|.+|+.+.....   ..-..|.....+.++  .|+++|+ +|++-+.|+++++||++..
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi--~FS~dg~-~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI--SFSYDGN-YLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE--Eeccccc-hhhhccCCCceeeeecccc
Confidence            7889998  889999999999999998654332   222334443344444  4799999 9999999999999999988


Q ss_pred             ceeEEEec----CCcEEEEEECCCC-EEEEEeC------CCeEEEEeCCC
Q 016134          353 MERGRIFS----KHEVRVIEIGPDK-LFFTGDG------AGMLGVWKLLA  391 (394)
Q Consensus       353 ~~~~~~~~----~~~v~~l~~sp~~-~l~tgs~------Dg~I~vWd~~~  391 (394)
                      +.......    ...-+.++|+|+. +|+||..      .|.+.+||-.+
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence            65433322    4557889999999 8888763      56788887543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.7e-20  Score=161.35  Aligned_cols=218  Identities=17%  Similarity=0.225  Sum_probs=173.1

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-EEEEEecC-----------------
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQD-----------------  232 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~-----------------  232 (394)
                      -+..|++|.|+|.+..|+.++.||+  +||+..........+..++.+.+|.++ .+++|+.|                 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig   91 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG   91 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence            4678999999999999999999999  699998877777788999999999987 88888877                 


Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .|...|.||.+.  .+.+++|+.|++|++||.+...++..+. ....|.++...++.|+.|..|..|.+||+++.....+
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q  170 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ  170 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchhh
Confidence            689999999998  6889999999999999999766666655 4458999999999999999999999999998665543


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC----ceeEEEec----------CCcEEEEEECCCC-EE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF----MERGRIFS----------KHEVRVIEIGPDK-LF  375 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~----------~~~v~~l~~sp~~-~l  375 (394)
                      .....-.....  +++.-|++. =+++++-||.|.+=.+...    +....+..          -.+|++|+|+|-. .|
T Consensus       171 ~reS~lkyqtR--~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf  247 (323)
T KOG1036|consen  171 RRESSLKYQTR--CVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF  247 (323)
T ss_pred             hccccceeEEE--EEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE
Confidence            33332222233  333456666 4677889999988666554    22222221          2369999999986 99


Q ss_pred             EEEeCCCeEEEEeCCCCCC
Q 016134          376 FTGDGAGMLGVWKLLAKPS  394 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~~~~~  394 (394)
                      +||+.||.|.+||+..+++
T Consensus       248 aTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  248 ATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             EecCCCceEEEccCcchhh
Confidence            9999999999999988754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.9e-21  Score=163.06  Aligned_cols=246  Identities=19%  Similarity=0.174  Sum_probs=175.7

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--cccccCCCeecCCCCCeEEEEEc
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--CCHWLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~i~iWd~  160 (394)
                      -+.+|+|.|.|++|||..+++.......         ..+.||...|..++ |.-  -+.+||+.+++|    .|.||..
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll---------~~L~Gh~GPVwqv~-wahPk~G~iLAScsYDg----kVIiWke   87 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLL---------AELTGHSGPVWKVA-WAHPKFGTILASCSYDG----KVIIWKE   87 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceee---------eEecCCCCCeeEEe-ecccccCcEeeEeecCc----eEEEEec
Confidence            4567899999999999999876642222         26889999999999 554  788899999988    9999998


Q ss_pred             CCC-ceEEEEecccCCCeEEEEecCC--CCEEEEEeCCCce--eecCCC-c-EE--EecCCCCcEEEEEEcCCEEEEEec
Q 016134          161 GEG-LTMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGTA--WNIESS-A-EF--SLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       161 ~~~-~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~v--Wd~~~~-~-~~--~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      +++ ++...+...|+..|++++|.|.  |-.|+.++.||.|  .+.++. . ..  ....|.-.|+++.+.|..+-- ..
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g-~~  166 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG-SL  166 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc-cc
Confidence            766 4567788899999999999884  6789999999993  443332 1 11  234555566666665531100 00


Q ss_pred             CCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeC
Q 016134          232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL--EPVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       232 ~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~  303 (394)
                      -.|...-     .-..|++|+.|..|+||+..++  +..++|++|.+.|..+++.      ...|++|++||++.||-.+
T Consensus       167 ~~~~~~~-----~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  167 VDQGPAA-----KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             cccCccc-----ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            0000000     0256999999999999998764  3456689999999999998      2479999999999999876


Q ss_pred             CC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          304 GR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       304 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      .. +..+....+.  -....+.+.|+..|. +|+.++.|+.|.+|.-..
T Consensus       242 ~e~e~wk~tll~~--f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  242 EEYEPWKKTLLEE--FPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CccCccccccccc--CCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence            32 1111111122  233455666889998 899999999999997553

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=171.34  Aligned_cols=259  Identities=16%  Similarity=0.223  Sum_probs=191.8

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC---ceEEEEec-ccCCCeEEEEecCCCCEEEEEeCCC
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG---LTMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDG  196 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg  196 (394)
                      ...++.+.|.+++ +.|.|.-++++++    |-+|+.||...-   ++..+.++ .....|.+++|++.+..|+..+...
T Consensus       162 ~l~hgtk~Vsal~-~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  162 QLKHGTKIVSALA-VDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             eccCCceEEEEee-ecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            4568889999999 7777776665554    459999998532   12222222 2356799999999998877666554


Q ss_pred             c--eeecCCCcEE-------------EecCCCCcEEEEEEcCC---EEEEEecC------------------------CC
Q 016134          197 T--AWNIESSAEF-------------SLDGPVGEVYSMVVANE---MLFAGAQD------------------------GH  234 (394)
Q Consensus       197 ~--vWd~~~~~~~-------------~~~~~~~~v~~l~~~~~---~l~~~~~~------------------------~h  234 (394)
                      .  |.|-...+..             ...+|...+++.+|+|.   .+++++.|                        +.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            4  5665443332             34678889999999997   77888777                        33


Q ss_pred             CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeE-EEcCCCC--CcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134          235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVM-TLNDHTD--APMSLLCW--DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~-~~~~h~~--~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                      .-.++..+|+  +.+||+|..||+|.+||.....  +.. .-++|..  .|++|.|+  |++|++-+.|+++++||+++.
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            4567788897  7889999999999999985432  222 2256776  89999999  899999999999999999976


Q ss_pred             cee-eEeecccCCcceEEEEeeECCCCCcEEEEEeC------CCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEE
Q 016134          306 GNL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACN------DNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       306 ~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~  376 (394)
                      +.. ..........  -...++|+|+.+ +|++|..      .+++.+||..+...+..+.- ...|..+.|+|.- .|+
T Consensus       397 kkpL~~~tgL~t~~--~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~  473 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPF--PGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF  473 (641)
T ss_pred             ccchhhhcCCCccC--CCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence            543 3322222211  122345899999 8888843      57899999999999988876 5678899999986 899


Q ss_pred             EEeCCCeEEEE
Q 016134          377 TGDGAGMLGVW  387 (394)
Q Consensus       377 tgs~Dg~I~vW  387 (394)
                      .|+.||.++|+
T Consensus       474 ~gsgdG~~~vy  484 (641)
T KOG0772|consen  474 AGSGDGTAHVY  484 (641)
T ss_pred             eecCCCceEEE
Confidence            99999999886

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.86  E-value=6.2e-21  Score=166.14  Aligned_cols=213  Identities=16%  Similarity=0.191  Sum_probs=163.5

Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC------cEEEecCC--CCcEEEEEEcCCEEEEEecCCCC
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS------AEFSLDGP--VGEVYSMVVANEMLFAGAQDGHT  235 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~------~~~~~~~~--~~~v~~l~~~~~~l~~~~~~~h~  235 (394)
                      ....+..|+.++.+-+|++||.+++||+.|..  |.|++..      +.+.....  .-+|..           ++-.|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR-----------TlYDH~  172 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR-----------TLYDHV  172 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe-----------ehhhcc
Confidence            34566789999999999999999999999998  4776521      11110000  012222           333799


Q ss_pred             CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCcee---EEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee
Q 016134          236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPV---MTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                      .+|+++.|+  ...|++|+.|++|++||+..-...   +.|+ ...+|.++.|+  |++|+.|....++++||+.+-++.
T Consensus       173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf  251 (430)
T KOG0640|consen  173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF  251 (430)
T ss_pred             CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence            999999999  568999999999999999753322   2222 45689999999  899999999999999999987766


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeCCCeE
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      ..-.... .+..-..++.|++.++ +.++++.||.|+|||--+++++.++..   ...|.+..|..++ +|++.+.|..|
T Consensus       252 vsanPd~-qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  252 VSANPDD-QHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             eecCccc-ccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence            5544222 2222223456899999 999999999999999999888877765   5579999999999 99999999999


Q ss_pred             EEEeCCCC
Q 016134          385 GVWKLLAK  392 (394)
Q Consensus       385 ~vWd~~~~  392 (394)
                      ++|++.+.
T Consensus       330 kLWEi~t~  337 (430)
T KOG0640|consen  330 KLWEISTG  337 (430)
T ss_pred             eeeeecCC
Confidence            99999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.86  E-value=4.2e-20  Score=167.38  Aligned_cols=217  Identities=20%  Similarity=0.248  Sum_probs=181.7

Q ss_pred             eecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcC
Q 016134          146 CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVAN  223 (394)
Q Consensus       146 ~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~  223 (394)
                      ...|+.|..+-++|...+ +.+.+|+||+..|+.+.|+|+...+++++.|..  ||......+..               
T Consensus       234 ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~---------------  297 (506)
T KOG0289|consen  234 ILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT---------------  297 (506)
T ss_pred             ceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc---------------
Confidence            345666778999999887 889999999999999999999999999999998  68876655432               


Q ss_pred             CEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC--CCCcEEEEEc--CCEEEEEeCCCcE
Q 016134          224 EMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH--TDAPMSLLCW--DQFLLSCSLDHTI  297 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h--~~~v~~l~~~--~~~l~s~s~Dg~i  297 (394)
                            ....|..+|+.+..+  +++|++++.|++....|++++.++......  .-.+++.+|+  |.+|.+|..|+.|
T Consensus       298 ------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v  371 (506)
T KOG0289|consen  298 ------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV  371 (506)
T ss_pred             ------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceE
Confidence                  122677888888776  899999999999999999999987766532  2357899999  6788999999999


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-E
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-L  374 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~  374 (394)
                      ++||+.++..+..+..|..++..+.+    +.+|- +|+++++|+.|++||++..+...++..  ..+|.++.|.+.| +
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~F----sENGY-~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISF----SENGY-WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY  446 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEe----ccCce-EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe
Confidence            99999999999999888877666654    77775 999999999999999999887777766  4469999999999 9


Q ss_pred             EEEEeCCCeEEEEeC
Q 016134          375 FFTGDGAGMLGVWKL  389 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~  389 (394)
                      |+.++.|=+|++++-
T Consensus       447 L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKK  461 (506)
T ss_pred             EEeecceeEEEEEec
Confidence            999988878877763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=1.7e-20  Score=177.07  Aligned_cols=290  Identities=15%  Similarity=0.174  Sum_probs=190.3

Q ss_pred             cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE
Q 016134           87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM  166 (394)
Q Consensus        87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~  166 (394)
                      ++-+=.|+-|.+.|...-.+.-.+.      ....-.-|..+|-.+. |-|+...|.+++-    |.++++||++++ ++
T Consensus        67 LavadE~G~i~l~dt~~~~fr~ee~------~lk~~~aH~nAifDl~-wapge~~lVsasG----DsT~r~Wdvk~s-~l  134 (720)
T KOG0321|consen   67 LAVADEDGGIILFDTKSIVFRLEER------QLKKPLAHKNAIFDLK-WAPGESLLVSASG----DSTIRPWDVKTS-RL  134 (720)
T ss_pred             EEEecCCCceeeecchhhhcchhhh------hhcccccccceeEeec-cCCCceeEEEccC----Cceeeeeeeccc-ee
Confidence            3445558888888887655431000      0013346777888888 8886666665544    449999999877 56


Q ss_pred             EEE--ecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEE---cCC-EEEEE--ecCCC-
Q 016134          167 LAK--LEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVV---ANE-MLFAG--AQDGH-  234 (394)
Q Consensus       167 ~~~--l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~---~~~-~l~~~--~~~~h-  234 (394)
                      +..  +.||+..|.+++|.|. ...|++|+.||.  |||+.-...-.+......++...-   .|. .+...  ....+ 
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            555  8999999999999995 567899999999  699875542111111111110000   000 00000  00022 


Q ss_pred             ---CCCEEEEEec-CCeEEEEeC-CCeEEEEeCCCCceeEEE--------cCC---CCCcEEEEEc--CCEEEEEeCCCc
Q 016134          235 ---TRPVTCLAVG-RSRLCSGSM-DNTIRVWELDTLEPVMTL--------NDH---TDAPMSLLCW--DQFLLSCSLDHT  296 (394)
Q Consensus       235 ---~~~V~~l~~~-~~~l~sgs~-Dg~V~iwd~~~~~~~~~~--------~~h---~~~v~~l~~~--~~~l~s~s~Dg~  296 (394)
                         ...|+.+.|- +..||+++. |+.|+|||++........        .-|   .-.+.++..+  |.+|++.+.|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence               2346666774 788999888 999999999875543222        122   2245666665  777777777999


Q ss_pred             EEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCC
Q 016134          297 IKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPD  372 (394)
Q Consensus       297 i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~  372 (394)
                      |.+||++....  +..+..+.  .......-+.+|++. +|++|+.|...++|.+.+.+....+..  ...|++++|.|.
T Consensus       295 Iy~ynm~s~s~sP~~~~sg~~--~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  295 IYFYNMRSLSISPVAEFSGKL--NSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             EEEEeccccCcCchhhccCcc--cceeeeeeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            99999986432  22222222  223333344689999 999999999999999998765544433  557999999998


Q ss_pred             C--EEEEEeCCCeEEEEeCCC
Q 016134          373 K--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       373 ~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      .  -++|+++|-.++||++..
T Consensus       372 ~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  372 ATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             cCCCceeeccCcceEEEeccC
Confidence            7  888999999999999854

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=9.6e-20  Score=158.29  Aligned_cols=269  Identities=13%  Similarity=0.139  Sum_probs=191.6

Q ss_pred             CcccCCCCCcccccccccccccCCCCCcccccccCCC-CCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCe
Q 016134           68 PKLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENP-GYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNC  146 (394)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~  146 (394)
                      ||..+.+.+++++ .....++.+|.|.+||+|+++.. .+.+ +          -..-+...|-.+. |+-++.-+++++
T Consensus        25 pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~-k----------a~~~~~~PvL~v~-WsddgskVf~g~   91 (347)
T KOG0647|consen   25 PPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVP-K----------AQQSHDGPVLDVC-WSDDGSKVFSGG   91 (347)
T ss_pred             CcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccc-h----------hhhccCCCeEEEE-EccCCceEEeec
Confidence            4445555566665 12223457888999999999974 4433 2          2445667888888 999998887777


Q ss_pred             ecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC--CEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEc
Q 016134          147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS--DKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA  222 (394)
Q Consensus       147 ~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~  222 (394)
                      .|+    .+++||+.++  ....+..|.++|..+.|-+..  ..|+|||.|++|  ||++....+......         
T Consensus        92 ~Dk----~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------  156 (347)
T KOG0647|consen   92 CDK----QAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---------  156 (347)
T ss_pred             cCC----ceEEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---------
Confidence            666    9999999987  456678899999999997654  489999999995  999987766433222         


Q ss_pred             CCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeE-EEc-CCCCCcEEEEEc--CCEEEEEeCCCcEE
Q 016134          223 NEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVM-TLN-DHTDAPMSLLCW--DQFLLSCSLDHTIK  298 (394)
Q Consensus       223 ~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~  298 (394)
                                   ..+.++..-..+++++..++.|.+|+++.+.... .++ ...-.+.+|++.  .+..+.|+-.|.+-
T Consensus       157 -------------eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  157 -------------ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             -------------ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence                         3444444446678888899999999997654321 111 122346777776  56668999999999


Q ss_pred             EEEeCCC--ceeeEeecccCCc----ceEEE-EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEEC
Q 016134          299 VWFATGR--GNLEAAYTHKEDN----GVLAL-GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIG  370 (394)
Q Consensus       299 vwd~~~~--~~~~~~~~~~~~~----~~~~~-~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~s  370 (394)
                      +..+..+  +.-..+..|....    .+.++ .++|+|... .|++++.||++.+||-.....+.... +..+|++.+|+
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence            9988775  4444555555321    13322 246899877 89999999999999988776666644 37899999999


Q ss_pred             CCC-EEEEE
Q 016134          371 PDK-LFFTG  378 (394)
Q Consensus       371 p~~-~l~tg  378 (394)
                      .+| +++.+
T Consensus       303 ~~G~ifaYA  311 (347)
T KOG0647|consen  303 RNGSIFAYA  311 (347)
T ss_pred             CCCCEEEEE
Confidence            999 54443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6.3e-22  Score=189.04  Aligned_cols=205  Identities=26%  Similarity=0.421  Sum_probs=174.5

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      .+++||.       +.+..|...|.++..-..++.+++|+.|..  +|.+.....+.                     ++
T Consensus        15 ~Lr~~~~-------~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---------------------S~   66 (825)
T KOG0267|consen   15 KLRVWDT-------REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---------------------SL   66 (825)
T ss_pred             ccccccc-------hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---------------------ee
Confidence            4566664       344679999999998778899999999987  57765443321                     23


Q ss_pred             CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      .+|..+|.+|.|+  ..+|+.|+.+|+|++||+++.+.+++|.+|...+.++.|+  +.++++++.|..+++||++...+
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc  146 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC  146 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence            4888999999987  5779999999999999999999999999999999999999  78999999999999999998888


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEE
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLG  385 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~  385 (394)
                      ...+..|.....++.    |+|+|. +++++++|.+++|||+..++....+. +...+..+.|+|.. ++++|+.|++|+
T Consensus       147 ~~~~~s~~~vv~~l~----lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLR----LSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             eeeecCCcceeEEEe----ecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence            888777554444443    599999 99999999999999999999998888 47889999999999 999999999999


Q ss_pred             EEeCCC
Q 016134          386 VWKLLA  391 (394)
Q Consensus       386 vWd~~~  391 (394)
                      +||+++
T Consensus       222 f~dlet  227 (825)
T KOG0267|consen  222 FWDLET  227 (825)
T ss_pred             eeccce
Confidence            999973

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=3.7e-20  Score=176.42  Aligned_cols=232  Identities=22%  Similarity=0.325  Sum_probs=179.8

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-CCceEEEEecccCCCeEE-EEecC-CCCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-EGLTMLAKLEGHEKAVSG-IALPL-RSDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-~~~~~~~~l~~h~~~V~~-l~~s~-~~~~l~sgs~Dg~  197 (394)
                      ...||+..|+.+. ..++. +    ..+++.|+++++|+-. +.+.....+.+|.+-|.. +++.+ ++-+|++|+.|.+
T Consensus         9 ~l~gH~~DVr~v~-~~~~~-~----i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    9 ELEGHKSDVRAVA-VTDGV-C----IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             EeccCccchheeE-ecCCe-E----EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            3557777777765 33322 2    3456677799999984 444555778899999988 88875 5567999999998


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDH  274 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h  274 (394)
                        +|.......+.                     .+.+|...|.++... ...+++||.|.+++||-.  +++...+++|
T Consensus        83 i~v~~~~~~~P~~---------------------~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH  139 (745)
T KOG0301|consen   83 IIVFKLSQAEPLY---------------------TLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGH  139 (745)
T ss_pred             EEEEecCCCCchh---------------------hhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCc
Confidence              47776665542                     233888889998865 445899999999999965  5777889999


Q ss_pred             CCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          275 TDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       275 ~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      +..|+++... .+.++|||.|.+|++|.-  ++.++++.+|...+..+++    -+++.  +++++.||.|++|++ +++
T Consensus       140 ~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v----l~~~~--flScsNDg~Ir~w~~-~ge  210 (745)
T KOG0301|consen  140 TASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV----LDDSH--FLSCSNDGSIRLWDL-DGE  210 (745)
T ss_pred             chheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEE----ecCCC--eEeecCCceEEEEec-cCc
Confidence            9999999887 679999999999999974  6788888888877666655    45554  788999999999999 455


Q ss_pred             eeEEEe-cCCcEEEEEECC-CCEEEEEeCCCeEEEEeCC
Q 016134          354 ERGRIF-SKHEVRVIEIGP-DKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       354 ~~~~~~-~~~~v~~l~~sp-~~~l~tgs~Dg~I~vWd~~  390 (394)
                      .+..+. +..-|.+++... ++.++++++|++++||+..
T Consensus       211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            555544 466799999444 4599999999999999865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=6.9e-19  Score=162.27  Aligned_cols=278  Identities=15%  Similarity=0.176  Sum_probs=201.9

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT  165 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~  165 (394)
                      .|++.+ ..-+..|+++++.+.....        .+..-.++.|.++. |.+.+..     ..|+.+|+|.||+..+. +
T Consensus       215 liit~G-k~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~engdv-----iTgDS~G~i~Iw~~~~~-~  278 (626)
T KOG2106|consen  215 LIITCG-KGHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLENGDV-----ITGDSGGNILIWSKGTN-R  278 (626)
T ss_pred             EEEEeC-CceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCCCCE-----EeecCCceEEEEeCCCc-e
Confidence            444443 3446679998888754221        23334446777777 6665544     56778889999999777 5


Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCC--CcEEEecCCCCcEEEEEEcCCEEEEEecC---------
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES--SAEFSLDGPVGEVYSMVVANEMLFAGAQD---------  232 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~--~~~~~~~~~~~~v~~l~~~~~~l~~~~~~---------  232 (394)
                      ..++...|.+.|.+++.-.+|.+|- |+.|+.|  ||-.-  .+...+....+.|..++-....+++|+..         
T Consensus       279 ~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~  357 (626)
T KOG2106|consen  279 ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE  357 (626)
T ss_pred             EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence            5555559999999999999987655 9999994  98322  22235556667777776544334444332         


Q ss_pred             --------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEE
Q 016134          233 --------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       233 --------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd  301 (394)
                              +|..+.+.++.+  .+++++++.|+.+++|+  ..+++.+.. -..++.++.|+ ...++.|...|...+.|
T Consensus       358 ~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  358 NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLD  434 (626)
T ss_pred             CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEe
Confidence                    788899999987  57899999999999999  455555443 45678899998 33999999999999999


Q ss_pred             eCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEE
Q 016134          302 ATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~t  377 (394)
                      .++...+.. ....++..++    .|+|+|. +||.|+.|+.|+||.+...........   ..+|+.+.|++|+ +|.+
T Consensus       435 ~e~~~lv~~-~~d~~~ls~v----~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~  508 (626)
T KOG2106|consen  435 TETQDLVTI-HTDNEQLSVV----RYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS  508 (626)
T ss_pred             cccceeEEE-EecCCceEEE----EEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence            988444333 2223333333    4699999 999999999999999987654443332   5789999999999 9999


Q ss_pred             EeCCCeEEEEeC
Q 016134          378 GDGAGMLGVWKL  389 (394)
Q Consensus       378 gs~Dg~I~vWd~  389 (394)
                      -+.|-.|..|.-
T Consensus       509 ~S~d~eiLyW~~  520 (626)
T KOG2106|consen  509 NSGDYEILYWKP  520 (626)
T ss_pred             ccCceEEEEEcc
Confidence            999999999943

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.85  E-value=4.6e-20  Score=168.21  Aligned_cols=208  Identities=17%  Similarity=0.277  Sum_probs=157.3

Q ss_pred             EecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134          169 KLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-  244 (394)
Q Consensus       169 ~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-  244 (394)
                      ..-.|.+.|+.+...|.... +++.+..+.  |||..........      .. .+.|+..+.    +|..+-.+|.|+ 
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------~~-~~~Pdl~L~----gH~~eg~glsWn~  187 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------SG-ECRPDLRLK----GHEKEGYGLSWNR  187 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------cc-cCCCceEEE----eeccccccccccc
Confidence            33469999999999997655 455555554  7998654433110      00 334443222    677777788997 


Q ss_pred             --CCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCC--CceeeE
Q 016134          245 --RSRLCSGSMDNTIRVWELDTL-------EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATG--RGNLEA  310 (394)
Q Consensus       245 --~~~l~sgs~Dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~--~~~~~~  310 (394)
                        ...|++++.|++|++||+...       .+...+.+|...|..++|+   .++|++++.|+.+.|||+|.  .+....
T Consensus       188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~  267 (422)
T KOG0264|consen  188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS  267 (422)
T ss_pred             ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence              567999999999999999643       2456678999999999998   78999999999999999994  444455


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE-EEec-CCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG-RIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      ...|..+..++    .|+|-+..+||+|+.|++|.+||+++..... .+.. ...|..|.|+|..  .|++++.|+.+.|
T Consensus       268 ~~ah~~~vn~~----~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  268 VKAHSAEVNCV----AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             ccccCCceeEE----EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            55555544433    3588888899999999999999999875533 3333 6789999999987  9999999999999


Q ss_pred             EeCCC
Q 016134          387 WKLLA  391 (394)
Q Consensus       387 Wd~~~  391 (394)
                      ||+..
T Consensus       344 WDls~  348 (422)
T KOG0264|consen  344 WDLSR  348 (422)
T ss_pred             Eeccc
Confidence            99874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.4e-20  Score=177.06  Aligned_cols=230  Identities=19%  Similarity=0.261  Sum_probs=183.1

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCC-CccceeeeccccccccccCCCeecCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESG-DKSTSKKTTLKNVCCHWLLGNCVRGDEC  152 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~~g~~~  152 (394)
                      ..+.|+.  ++..|+.|-.+.++.|||+++.+...            ...+ |...|.+++ |+      ......|+.|
T Consensus       221 tSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~------------~~~~~h~~rvg~la-W~------~~~lssGsr~  279 (484)
T KOG0305|consen  221 TSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTR------------TLRGSHASRVGSLA-WN------SSVLSSGSRD  279 (484)
T ss_pred             EEEEECC--CCCEEEEeecCCeEEEEehhhccccc------------cccCCcCceeEEEe-cc------CceEEEecCC
Confidence            4566666  88899999999999999999777543            3445 777888888 77      4556778888


Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAG  229 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~  229 (394)
                      +.|..+|+......+.++++|...|..++|++|+.+||+|+.|+.  |||....+.+ .+.                   
T Consensus       280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-------------------  340 (484)
T KOG0305|consen  280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-------------------  340 (484)
T ss_pred             CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-------------------
Confidence            899999998775556669999999999999999999999999999  7998444332 333                   


Q ss_pred             ecCCCCCCEEEEEec---CCeEEEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE--eCCCcEEEE
Q 016134          230 AQDGHTRPVTCLAVG---RSRLCSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC--SLDHTIKVW  300 (394)
Q Consensus       230 ~~~~h~~~V~~l~~~---~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~--s~Dg~i~vw  300 (394)
                         .|..+|.+++|+   .++||+|+  .|+.|++||..+++.+..+. -...|.+|.|+  .+.|+++  -.++.|.||
T Consensus       341 ---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw  416 (484)
T KOG0305|consen  341 ---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLW  416 (484)
T ss_pred             ---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence               566667777765   57788865  69999999999999998876 45789999999  3334443  347799999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      +..+.+.+..+..|...+..+    +.+|||. .+++|+.|.++++|++-..
T Consensus       417 ~~ps~~~~~~l~gH~~RVl~l----a~SPdg~-~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  417 KYPSMKLVAELLGHTSRVLYL----ALSPDGE-TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eccccceeeeecCCcceeEEE----EECCCCC-EEEEecccCcEEeccccCC
Confidence            999988888888887653333    3599999 8999999999999998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.4e-20  Score=167.80  Aligned_cols=224  Identities=17%  Similarity=0.210  Sum_probs=169.8

Q ss_pred             ccccCCCeecCCCCCeEEEEEcC--CCceEEEEe------------------cccCCCeEEEEecCC-CCEEEEEeCCCc
Q 016134          139 CHWLLGNCVRGDECRFLHSWFCG--EGLTMLAKL------------------EGHEKAVSGIALPLR-SDKLFSGSRDGT  197 (394)
Q Consensus       139 ~~~~~~~~~~g~~~~~i~iWd~~--~~~~~~~~l------------------~~h~~~V~~l~~s~~-~~~l~sgs~Dg~  197 (394)
                      ++|+|-++.+-    .|.|||+.  +...+..+|                  .+|+..|.+|+|+.. .+.|||||.|.+
T Consensus       192 gNyvAiGtmdp----~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  192 GNYVAIGTMDP----EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT  267 (463)
T ss_pred             cceEEEeccCc----eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence            44555555444    89999984  332333333                  279999999999874 578999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCce-eEEE
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEP-VMTL  271 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~-~~~~  271 (394)
                        +||+.++++.....                     .|...|.++.|+   +..|++|+.|++|++.|.|.... -..+
T Consensus       268 V~lWD~~~g~p~~s~~---------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSIT---------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             EEEEEcCCCCcceehh---------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence              59999999874322                     467788888886   67899999999999999985222 2222


Q ss_pred             cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEE
Q 016134          272 NDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLY  347 (394)
Q Consensus       272 ~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iw  347 (394)
                      + ..+.|-.+.|.   ...++++..||+|+-+|+|+. +++.++..|..++..+++    ++.-..+|++++.|+.|++|
T Consensus       327 k-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~----n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  327 K-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV----NIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             E-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe----cCCCCcceeeccccceEEEE
Confidence            2 35678888887   567888889999999999986 788888899988877776    55555589999999999999


Q ss_pred             ECCCCceeEEEec---CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          348 ELPSFMERGRIFS---KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       348 d~~~~~~~~~~~~---~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++..-.......+   -+...|.++.|+-  .|+.|+..+.++|||+.+.
T Consensus       402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9876544332222   3347788888886  8999999999999998764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.3e-19  Score=174.78  Aligned_cols=220  Identities=19%  Similarity=0.252  Sum_probs=181.2

Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC-cEEE-ecCCCCcEEEEEEcCCEEEEEecC--------------
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS-AEFS-LDGPVGEVYSMVVANEMLFAGAQD--------------  232 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~-~~~~-~~~~~~~v~~l~~~~~~l~~~~~~--------------  232 (394)
                      .+|+...+.|+|.|+|++|++++.|+.  +|+.... +... +..+...|.+++.....+++++.+              
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            478999999999999999999999999  4876655 2222 222677888888877788888776              


Q ss_pred             ----CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134          233 ----GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       233 ----~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~  304 (394)
                          ..+-++.+++++  |++++.||.|-.|++-++.+......+.+|..+|.++.|+  +++||+.+.||.|++||+.+
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence                235578888887  6799999999999999999999999999999999999999  78999999999999999998


Q ss_pred             CceeeEeecccCC----cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEE
Q 016134          305 RGNLEAAYTHKED----NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       305 ~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~  376 (394)
                      +.....+......    ...++....|+|++. -|+..+.|+.|++|+...++....+..   ...+..++|+|.| |||
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            7766555442221    134455677999977 466677799999999999988888765   3349999999999 999


Q ss_pred             EEeCCCeEEEEeCCC
Q 016134          377 TGDGAGMLGVWKLLA  391 (394)
Q Consensus       377 tgs~Dg~I~vWd~~~  391 (394)
                      +++.||.|.|||+++
T Consensus       249 As~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDT  263 (933)
T ss_pred             eeccCCcEEEEeccc
Confidence            999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=2e-19  Score=155.85  Aligned_cols=263  Identities=22%  Similarity=0.270  Sum_probs=197.4

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce-----------E---EEEecccCCCeEEEEecC-C
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT-----------M---LAKLEGHEKAVSGIALPL-R  185 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~-----------~---~~~l~~h~~~V~~l~~s~-~  185 (394)
                      +.+-|...|.++.+....++|+.++..+|    .|.+||+++...           +   ...-.+|+-.|.++.|-| |
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadg----si~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADG----SIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCc----cEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            66777788888887888999998777776    899999974420           1   112246889999999988 6


Q ss_pred             CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-----EEEEEecC------------------CCCCCEEE
Q 016134          186 SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-----MLFAGAQD------------------GHTRPVTC  240 (394)
Q Consensus       186 ~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~~------------------~h~~~V~~  240 (394)
                      .-.+.+++.|.+  |||..+.+.......++.|++-+++|-     .+++|+.+                  +|...|.+
T Consensus       114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             CceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            678889999998  799999998877777888888888775     55555554                  89999999


Q ss_pred             EEecCC---eEEEEeCCCeEEEEeCCCC-ceeEEE--------------cCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          241 LAVGRS---RLCSGSMDNTIRVWELDTL-EPVMTL--------------NDHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       241 l~~~~~---~l~sgs~Dg~V~iwd~~~~-~~~~~~--------------~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                      +.|++.   .|++|+.||.||+||++.- .|...+              ..|.+.|..++|.  +.++++++.|..+++|
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            999843   5999999999999999854 333333              2466788899998  7899999999999999


Q ss_pred             EeCCCceeeEeecccCCc--ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEE
Q 016134          301 FATGRGNLEAAYTHKEDN--GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~  376 (394)
                      +..+++............  ....+... +.+.. .++---.++.+.++.+-+++.+..+.. ...|.+.++-|+- ...
T Consensus       274 n~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~  351 (397)
T KOG4283|consen  274 NMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF  351 (397)
T ss_pred             ecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhh
Confidence            998876544333211111  11111111 22333 444445568999999999988877765 5568899999887 999


Q ss_pred             EEeCCCeEEEEeC
Q 016134          377 TGDGAGMLGVWKL  389 (394)
Q Consensus       377 tgs~Dg~I~vWd~  389 (394)
                      +|..|+.|..|-.
T Consensus       352 tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  352 TGDMNGNIYMWSP  364 (397)
T ss_pred             ccccCCccccccc
Confidence            9999999999965

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.6e-20  Score=180.77  Aligned_cols=220  Identities=16%  Similarity=0.242  Sum_probs=169.3

Q ss_pred             cccccCCCeecCCCCCeEEEEEcCC--CceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEE-ecC
Q 016134          138 CCHWLLGNCVRGDECRFLHSWFCGE--GLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFS-LDG  211 (394)
Q Consensus       138 ~~~~~~~~~~~g~~~~~i~iWd~~~--~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~  211 (394)
                      ..++||+....|    .|.+||+..  ..+++..|..|+..|+++.|++ ...+|+|||+||+  +||++..+... +. 
T Consensus        99 ~~NlIAT~s~nG----~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-  173 (839)
T KOG0269|consen   99 YSNLIATCSTNG----VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-  173 (839)
T ss_pred             hhhhheeecCCC----cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-
Confidence            566778777777    999999976  2366778999999999999988 5578999999999  59999877653 22 


Q ss_pred             CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--C
Q 016134          212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--D  285 (394)
Q Consensus       212 ~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~  285 (394)
                                           +....|..++|+   ++.|+++...|.+.+||++. .++...+.+|.++|.++.|+  .
T Consensus       174 ---------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  174 ---------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR  232 (839)
T ss_pred             ---------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence                                 334556666665   67899999999999999986 45678889999999999999  6


Q ss_pred             CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEEec--C
Q 016134          286 QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRIFS--K  361 (394)
Q Consensus       286 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~--~  361 (394)
                      .+||||+.|+.|+|||....+.......+.. ..+-  .+.|-|+..+.|++++.  |-.|+|||++..-.......  .
T Consensus       233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-apv~--rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  233 EWLATGGRDKMVKIWDMTDSRAKPKHTINTI-APVG--RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             ceeeecCCCccEEEEeccCCCccceeEEeec-ceee--eeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence            7999999999999999986544333222211 1111  33468888878887654  78999999998765554443  5


Q ss_pred             CcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          362 HEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       362 ~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      ..++.++|....  .|.+++.|+.|..
T Consensus       310 ~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  310 DSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             ccccceeccCCCceeeEeecCccHHHH
Confidence            568899998743  9999999998754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=2.7e-19  Score=159.68  Aligned_cols=215  Identities=20%  Similarity=0.254  Sum_probs=160.8

Q ss_pred             CCCCeEEEEEcC---------------CCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecC
Q 016134          150 DECRFLHSWFCG---------------EGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDG  211 (394)
Q Consensus       150 ~~~~~i~iWd~~---------------~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~  211 (394)
                      +..|.|+||++.               ...+++.++.+|...=++|+|+|-. ..|+||.--+.  +|...++.-..-..
T Consensus       172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~  251 (440)
T KOG0302|consen  172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR  251 (440)
T ss_pred             cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence            345589999975               2256788999999999999999932 34666654444  58777765432111


Q ss_pred             CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCcEEEEEc-
Q 016134          212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL---EPVMTLNDHTDAPMSLLCW-  284 (394)
Q Consensus       212 ~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~-  284 (394)
                                        .+-+|+..|..|+|+   .+.|++||.||+|+|||+|.+   .++.+ ++|.+.|+.|.|+ 
T Consensus       252 ------------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr  312 (440)
T KOG0302|consen  252 ------------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR  312 (440)
T ss_pred             ------------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC
Confidence                              111799999999997   578999999999999999987   34444 8899999999999 


Q ss_pred             -CCEEEEEeCCCcEEEEEeCC---CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-------
Q 016134          285 -DQFLLSCSLDHTIKVWFATG---RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-------  353 (394)
Q Consensus       285 -~~~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-------  353 (394)
                       ..+||+|+.||+++|||+|+   ++++..+..|..+++.+.+    +|.....|++++.|.+|.|||+.-..       
T Consensus       313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW----~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~  388 (440)
T KOG0302|consen  313 REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW----HPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ  388 (440)
T ss_pred             CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe----ccccCceEEeccCCCcEEEEEeeccCChhhhcc
Confidence             45899999999999999986   4566777778876665544    77666689999999999999985321       


Q ss_pred             ------------eeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134          354 ------------ERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWK  388 (394)
Q Consensus       354 ------------~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd  388 (394)
                                  ++........+..+.|++.-  +|++.+.|| +.||.
T Consensus       389 ~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  389 EAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                        11111125568899999975  999999998 44553

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.9e-20  Score=180.35  Aligned_cols=189  Identities=16%  Similarity=0.240  Sum_probs=153.9

Q ss_pred             CeEEEEecC-CCCEEEEEeCCCc--eeecCCC---cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CC
Q 016134          176 AVSGIALPL-RSDKLFSGSRDGT--AWNIESS---AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RS  246 (394)
Q Consensus       176 ~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~---~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~  246 (394)
                      .+.++.|.. +.++|||++..|.  +||+...   +.+.                     .+..|+..++++.|+   ++
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~---------------------~f~EH~Rs~~~ldfh~tep~  147 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT---------------------VFNEHERSANKLDFHSTEPN  147 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh---------------------HhhhhccceeeeeeccCCcc
Confidence            456678864 6789999999999  5999762   2211                     122788899999997   78


Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEE
Q 016134          247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLA  322 (394)
Q Consensus       247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~  322 (394)
                      +|++||.||+|++||++..+...++.+....|..|.|+   +..|+++.+.|.+++||+|.... ...+..|..++    
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV----  223 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV----  223 (839)
T ss_pred             EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce----
Confidence            99999999999999999999999999999999999999   78999999999999999997643 34444555433    


Q ss_pred             EEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEecCCcEEEEEECCCC--EEEEEe--CCCeEEEEeCC
Q 016134          323 LGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIFSKHEVRVIEIGPDK--LFFTGD--GAGMLGVWKLL  390 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~v~~l~~sp~~--~l~tgs--~Dg~I~vWd~~  390 (394)
                      +++.|+|++. +||+|+.|+.|+|||..+.+  .+..+....+|..|.|-|+.  .|++++  .|-.|+|||+.
T Consensus       224 ~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  224 LCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             EEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            3344799887 99999999999999998653  44555567899999999998  888887  57899999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=2.4e-20  Score=165.57  Aligned_cols=220  Identities=18%  Similarity=0.296  Sum_probs=176.1

Q ss_pred             eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCC-------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDG-------  233 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~-------  233 (394)
                      ..+..|.||.+.|.+++=+|.. ..++||+.||.  |||+....+. .+..|.+.|..+.+....+++++.|.       
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence            4567779999999999999976 88999999999  6999998877 78899999999999988677666651       


Q ss_pred             -----C----CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEE
Q 016134          234 -----H----TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKV  299 (394)
Q Consensus       234 -----h----~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~v  299 (394)
                           |    ...+..|.-+  .+.++|++.  .|.|||.+...+++++.--.+.|.++.|+   ...|++|..|+.|.|
T Consensus       137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL  214 (433)
T KOG0268|consen  137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL  214 (433)
T ss_pred             cCCcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence                 0    1122223222  467888875  58999999889999998878889999999   468889989999999


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEE
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~  376 (394)
                      ||+++..++..+..... ...+    +|+|++- .+++|++|..++.||++..+.......  ...|..++|+|.| -|+
T Consensus       215 yD~R~~~Pl~KVi~~mR-TN~I----swnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  215 YDLRQASPLKKVILTMR-TNTI----CWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             EecccCCccceeeeecc-ccce----ecCcccc-ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence            99999988877654322 2223    3689665 788999999999999998755444333  5579999999999 999


Q ss_pred             EEeCCCeEEEEeCCCC
Q 016134          377 TGDGAGMLGVWKLLAK  392 (394)
Q Consensus       377 tgs~Dg~I~vWd~~~~  392 (394)
                      +||.|.+|+||.++..
T Consensus       289 sgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  289 SGSYDKSIRIFPVNHG  304 (433)
T ss_pred             cccccceEEEeecCCC
Confidence            9999999999998754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=7.4e-21  Score=181.81  Aligned_cols=208  Identities=23%  Similarity=0.375  Sum_probs=176.7

Q ss_pred             ecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       147 ~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      .+|+.+..+.+|.+... ..+..|.+|..+|.+|.|+++..+|++|+.+|+  +||++.++.++                
T Consensus        44 ~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr----------------  106 (825)
T KOG0267|consen   44 VTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR----------------  106 (825)
T ss_pred             ccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh----------------
Confidence            35556668889988765 566779999999999999999999999999999  69999887663                


Q ss_pred             EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                           ++-+|...+.++.|+  +.++++|+.|..+++||++...|.+.+.+|...|..+.|.  |.+++++++|.+++||
T Consensus       107 -----tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~  181 (825)
T KOG0267|consen  107 -----TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW  181 (825)
T ss_pred             -----hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence                 222777888888887  6788999999999999999999999999999999999998  7899999999999999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEE
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tg  378 (394)
                      |+..++....+..|...+..+.    |+|..- ++++|+.|++|++||+++++.+..... ...|.+++|+|++ .+++|
T Consensus       182 d~~agk~~~ef~~~e~~v~sle----~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  182 DLTAGKLSKEFKSHEGKVQSLE----FHPLEV-LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             cccccccccccccccccccccc----cCchhh-hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence            9999988888887776655444    577766 899999999999999999888777665 6679999999999 66666


Q ss_pred             eCC
Q 016134          379 DGA  381 (394)
Q Consensus       379 s~D  381 (394)
                      ..+
T Consensus       257 ~q~  259 (825)
T KOG0267|consen  257 EQI  259 (825)
T ss_pred             chh
Confidence            544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.8e-19  Score=155.57  Aligned_cols=276  Identities=14%  Similarity=0.168  Sum_probs=186.4

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ...++.  ++.+++|.++|++||||++..-....|.     ..+.+-..+|+..|   . |.|++.-+...|..|+   +
T Consensus        91 ~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr-----~~R~nve~dhpT~V---~-FapDc~s~vv~~~~g~---~  156 (420)
T KOG2096|consen   91 DVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHR-----CIRQNVEYDHPTRV---V-FAPDCKSVVVSVKRGN---K  156 (420)
T ss_pred             eeEEcC--CCceeEEEeCCceEEEEecchhhhhhhh-----HhhccccCCCceEE---E-ECCCcceEEEEEccCC---E
Confidence            344444  9999999999999999999864333332     22233455665444   4 9998888877777776   7


Q ss_pred             EEEEEcCC---Cc-----eE---EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEE
Q 016134          155 LHSWFCGE---GL-----TM---LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMV  220 (394)
Q Consensus       155 i~iWd~~~---~~-----~~---~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~  220 (394)
                      +++|....   +.     ..   ...-+-|+-.|..+-....+++|+|++.|..  ||++. |+.+ .+......-+.  
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~--  233 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD--  233 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc--
Confidence            88887632   10     01   1122346778888888889999999999998  69998 6655 33222211111  


Q ss_pred             EcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCC---CC-----ceeEEEcCCCCCcEEEEEc--CCEEEE
Q 016134          221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD---TL-----EPVMTLNDHTDAPMSLLCW--DQFLLS  290 (394)
Q Consensus       221 ~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~---~~-----~~~~~~~~h~~~v~~l~~~--~~~l~s  290 (394)
                                        ..+.-+|.++++++.--.|++|.+-   .|     ..+..+++|...|..++|+  ...+++
T Consensus       234 ------------------aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt  295 (420)
T KOG2096|consen  234 ------------------AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT  295 (420)
T ss_pred             ------------------eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE
Confidence                              1223347889999998999999862   22     2467789999999999999  578999


Q ss_pred             EeCCCcEEEEEeCC----C---ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--C
Q 016134          291 CSLDHTIKVWFATG----R---GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--K  361 (394)
Q Consensus       291 ~s~Dg~i~vwd~~~----~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~  361 (394)
                      .+.||+++|||+.-    +   +.++.............+....+|+|+ .|+. +....|++|..++++....+..  .
T Consensus       296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~-s~gs~l~~~~se~g~~~~~~e~~h~  373 (420)
T KOG2096|consen  296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAV-SFGSDLKVFASEDGKDYPELEDIHS  373 (420)
T ss_pred             EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEe-ecCCceEEEEcccCccchhHHHhhc
Confidence            99999999999742    1   112221111111111122334589999 5654 3456899999999877666554  6


Q ss_pred             CcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          362 HEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       362 ~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      ..|.+++|+++| +++|+ .|..++++.
T Consensus       374 ~~Is~is~~~~g~~~atc-Gdr~vrv~~  400 (420)
T KOG2096|consen  374 TTISSISYSSDGKYIATC-GDRYVRVIR  400 (420)
T ss_pred             CceeeEEecCCCcEEeee-cceeeeeec
Confidence            679999999999 66666 567788765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.1e-18  Score=164.28  Aligned_cols=252  Identities=19%  Similarity=0.308  Sum_probs=199.5

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEEEeCCCce--eecCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFSGSRDGTA--WNIES  203 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~  203 (394)
                      ..|++++ ++-....+|.+-.+|    .|.||++..++-+..++.++. ..|.+|+|. ++.+|+|.+.+|.|  ||+.+
T Consensus        26 s~I~slA-~s~kS~~lAvsRt~g----~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   26 SEIVSLA-YSHKSNQLAVSRTDG----NIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             cceEEEE-EeccCCceeeeccCC----cEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence            4778888 666666666655555    999999999988888888875 679999998 67789999999996  99999


Q ss_pred             CcEE-EecCCCCcEEEEEEcCC--EEEEEecC--------------------CCCCCEEEEEec--CCeEEEEeCCCeEE
Q 016134          204 SAEF-SLDGPVGEVYSMVVANE--MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSGSMDNTIR  258 (394)
Q Consensus       204 ~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~  258 (394)
                      .+.. ......+.|.+++.+|.  .+++|+.+                    -.++.|.++.|+  +..+++|+.||.|+
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence            8876 67778889999999886  77788776                    345789999998  45699999999999


Q ss_pred             EEeCCCCceeEEEcC--------CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134          259 VWELDTLEPVMTLND--------HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       259 iwd~~~~~~~~~~~~--------h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      +||..++..++....        ...-|+++.|. ...|++|..-|+|++||...+..++.+..|...+.+++.    ++
T Consensus       180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav----~~  255 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV----AD  255 (691)
T ss_pred             EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE----cC
Confidence            999999887662221        12235666666 789999999999999999999998888888866555554    56


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCcee-----EEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          330 DGKPVLICACNDNTVHLYELPSFMER-----GRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      ++. .+++++.|+.|..|........     ....+.+.|.+++..++ .+++|+.|..+.+=...
T Consensus       256 ~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  256 NED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSR  319 (691)
T ss_pred             CCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEcccc
Confidence            666 8899999999999988776331     12234778999999888 89999999988765443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.8e-18  Score=149.57  Aligned_cols=249  Identities=12%  Similarity=0.160  Sum_probs=175.8

Q ss_pred             ccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC---CCceEEEEecccCCCeEEEEecC--CCCEEEEEeC
Q 016134          120 SDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---EGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSR  194 (394)
Q Consensus       120 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~  194 (394)
                      +...||+-.|..+. |.+.|..+|+.+.++    +|+|||.+   ..+.+....+.|.+.|..|.|.+  -|+.+|+++.
T Consensus         7 pi~s~h~DlihdVs-~D~~GRRmAtCSsDq----~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVS-FDFYGRRMATCSSDQ----TVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             ccccCCcceeeeee-ecccCceeeeccCCC----cEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            35668888899999 999999999888777    99999964   33677888899999999999954  5899999999


Q ss_pred             CCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCC----
Q 016134          195 DGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDT----  264 (394)
Q Consensus       195 Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~----  264 (394)
                      |++  ||.-+...   +..+..+         .+-..+.......|+++.|.    |-.|++++.||.||||+.-.    
T Consensus        82 Drtv~iWEE~~~~---~~~~~~~---------Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   82 DRTVSIWEEQEKS---EEAHGRR---------WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             CCceeeeeecccc---cccccce---------eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence            999  68754211   1111100         11111222456778888886    55799999999999998643    


Q ss_pred             --CceeEEEc-------CCCCCcEEEEEc-----CCEEEEEeCC-----CcEEEEEeCCCc----eeeEeecccCCcceE
Q 016134          265 --LEPVMTLN-------DHTDAPMSLLCW-----DQFLLSCSLD-----HTIKVWFATGRG----NLEAAYTHKEDNGVL  321 (394)
Q Consensus       265 --~~~~~~~~-------~h~~~v~~l~~~-----~~~l~s~s~D-----g~i~vwd~~~~~----~~~~~~~~~~~~~~~  321 (394)
                        ..+..+++       .+..+..|+.|+     .++|+.|+.+     +.++||......    .+..+..+..++..+
T Consensus       150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di  229 (361)
T KOG2445|consen  150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI  229 (361)
T ss_pred             ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence              23333333       356677888887     4678887765     488999765543    333444555555444


Q ss_pred             EEEeeECCCC---CcEEEEEeCCCeEEEEECCCCc--------------------eeEEEe-cCCcEEEEEECCCC-EEE
Q 016134          322 ALGGLNDPDG---KPVLICACNDNTVHLYELPSFM--------------------ERGRIF-SKHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       322 ~~~~~~s~~g---~~~l~sgs~dg~I~iwd~~~~~--------------------~~~~~~-~~~~v~~l~~sp~~-~l~  376 (394)
                      ++    .|+-   -++||+++.|| |+||.+....                    .+..+. |..+|+.+.|+-.| .|+
T Consensus       230 ~w----APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs  304 (361)
T KOG2445|consen  230 SW----APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS  304 (361)
T ss_pred             ee----ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence            44    5542   13799999999 9999987311                    111111 25579999999999 999


Q ss_pred             EEeCCCeEEEEeCC
Q 016134          377 TGDGAGMLGVWKLL  390 (394)
Q Consensus       377 tgs~Dg~I~vWd~~  390 (394)
                      +.+.||+||+|...
T Consensus       305 StGdDG~VRLWkan  318 (361)
T KOG2445|consen  305 STGDDGCVRLWKAN  318 (361)
T ss_pred             ecCCCceeeehhhh
Confidence            99999999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=4.2e-18  Score=148.61  Aligned_cols=245  Identities=13%  Similarity=0.180  Sum_probs=192.0

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESS  204 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~  204 (394)
                      -.|+++. |++....|..++.||    ++++||.... .+...+ .|..++.+++|.+ ...+++|+.||.|  +|+.++
T Consensus        14 d~IS~v~-f~~~~~~LLvssWDg----slrlYdv~~~-~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   14 DGISSVK-FSPSSSDLLVSSWDG----SLRLYDVPAN-SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             hceeeEE-EcCcCCcEEEEeccC----cEEEEeccch-hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence            4788888 889888888888888    9999999776 444443 5999999999976 5689999999994  999999


Q ss_pred             cEEEecCCCCcEEEEEEcCC--EEEEEecC-----------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC
Q 016134          205 AEFSLDGPVGEVYSMVVANE--MLFAGAQD-----------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      ....+..|...|.+|.+.+.  .+++|++|                 .....|.++...++.|++|..|..|.+||+++.
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence            99999999999999999954  89999988                 345689999999999999999999999999986


Q ss_pred             ceeEEEc--CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC----ceeeEeecccCCcc----eE-EEEeeECCCCC
Q 016134          266 EPVMTLN--DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR----GNLEAAYTHKEDNG----VL-ALGGLNDPDGK  332 (394)
Q Consensus       266 ~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~----~~~~~~~~~~~~~~----~~-~~~~~~s~~g~  332 (394)
                      ....+..  .-...+.++++.  +.-++.++-||+|.+=.+...    .....+..|.....    +. .-+..|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            5433221  233456777776  466788899999988776654    23334444432211    11 11235788866


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134          333 PVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       333 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~  380 (394)
                       .|+||+.||.|.+||+.+.+.+..+.. +..|.+++|+.+| .||+++.
T Consensus       246 -tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  246 -TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             -eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence             899999999999999999888877766 5679999999999 8888874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.82  E-value=2.2e-19  Score=165.33  Aligned_cols=265  Identities=18%  Similarity=0.237  Sum_probs=199.8

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-c
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-L  164 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~  164 (394)
                      +.+..++.+-|||||+..+..   +...+...    -.-...-|++.. ..|+++-|..+...    .++.|||+... .
T Consensus       432 rhVyTgGkgcVKVWdis~pg~---k~PvsqLd----cl~rdnyiRSck-L~pdgrtLivGGea----stlsiWDLAapTp  499 (705)
T KOG0639|consen  432 RHVYTGGKGCVKVWDISQPGN---KSPVSQLD----CLNRDNYIRSCK-LLPDGRTLIVGGEA----STLSIWDLAAPTP  499 (705)
T ss_pred             ceeEecCCCeEEEeeccCCCC---CCcccccc----ccCcccceeeeE-ecCCCceEEecccc----ceeeeeeccCCCc
Confidence            334456678899999987632   11111100    011123566666 66666666554443    38999999654 2


Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      ....++....-...+++.+||.+..+++..||.  |||+.+...++                     .+.+|++.+.||.
T Consensus       500 rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---------------------qfqGhtDGascId  558 (705)
T KOG0639|consen  500 RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---------------------QFQGHTDGASCID  558 (705)
T ss_pred             chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---------------------cccCCCCCceeEE
Confidence            444555555567888999999999999999999  69998877663                     3348888899999


Q ss_pred             ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134          243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                      ++  |..|.+|+-|.+||.||+++++.++... ..+.|.++.+.  ++.|+.|-+.+.+-|......+..   ..|.+..
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky---qlhlheS  634 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY---QLHLHES  634 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccce---eeccccc
Confidence            87  8899999999999999999988766543 45788898887  889999999999888877654332   2233334


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .++++  .|.+.|+ ++++.+.|+-+..|...-+..+.+......|.++.++.|+ +|+||+.|..-.||.+.
T Consensus       635 cVLSl--KFa~cGk-wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  635 CVLSL--KFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             EEEEE--EecccCc-eeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence            44444  5889999 9999999999999999999999888888899999999999 99999999999888763

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=8.5e-19  Score=151.94  Aligned_cols=212  Identities=15%  Similarity=0.269  Sum_probs=161.6

Q ss_pred             ecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          170 LEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       170 l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                      ...|.+.|+++...+ .|+++++|+.||.  |||++.....+..+....-.++      +..-..++|.-.|.++.|-  
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~------v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI------VAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee------ccccCCccceeeeeeeEEeee
Confidence            356889999999987 7899999999999  6999876533211111000010      1111234888899999985  


Q ss_pred             -CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134          245 -RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       245 -~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                       ..++.+++.|.+++|||..+.+....|+ -.+.|++-+++     .-++|+|..|-+|++.|+..+.....+.+|...+
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence             5789999999999999999998887776 34566666555     4578888889999999999999999999888653


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEE---------------ecCCcEEEEEECCCC-EEEEEeCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRI---------------FSKHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~---------------~~~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                        +++  .|+|..+.+|++|+.||.|++||++.- .+...+               .+.+.|+.++|..++ ++++++.|
T Consensus       192 --laV--~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd  267 (397)
T KOG4283|consen  192 --LAV--EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD  267 (397)
T ss_pred             --EEE--EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence              433  368888889999999999999999864 222211               124569999999999 99999999


Q ss_pred             CeEEEEeCCCC
Q 016134          382 GMLGVWKLLAK  392 (394)
Q Consensus       382 g~I~vWd~~~~  392 (394)
                      ..+++|+....
T Consensus       268 ~r~r~wn~~~G  278 (397)
T KOG4283|consen  268 DRIRVWNMESG  278 (397)
T ss_pred             cceEEeecccC
Confidence            99999997654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=9.1e-19  Score=156.32  Aligned_cols=216  Identities=22%  Similarity=0.308  Sum_probs=155.0

Q ss_pred             EEecccCCCeEEEEecCCC--CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          168 AKLEGHEKAVSGIALPLRS--DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      ....+|.+.|+.+..++-+  .+.++-+..|.  ||++...-.. +......+....+.|  ++  +..+|...=..|+|
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~-l~~~~~~~~~s~~~P--l~--t~~ghk~EGy~LdW  219 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA-LSEPGLEVKDSEFRP--LF--TFNGHKGEGYGLDW  219 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh-hcCccccccccccCc--eE--EecccCccceeeec
Confidence            3445788889988887754  45555566666  7997543211 111111111111111  11  23378888899999


Q ss_pred             cC---CeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeE--ee
Q 016134          244 GR---SRLCSGSMDNTIRVWELDTLEP---VMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEA--AY  312 (394)
Q Consensus       244 ~~---~~l~sgs~Dg~V~iwd~~~~~~---~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~  312 (394)
                      ++   ..|++|..-+.|++|...++.=   ...|.+|+..|-.++|+   ...|++||.|++|+|||+|.+.....  ..
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence            84   5688998889999999887652   24466799999999997   67999999999999999998733222  24


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc---eeEEEe-cCCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM---ERGRIF-SKHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~---~~~~~~-~~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      .|...+.++++    +.... +||+|+.||+++|||++..+   ++..+. |..+|++|.|+|..  .|++++.|.+|.|
T Consensus       300 Ah~sDVNVISW----nr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  300 AHNSDVNVISW----NRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             ccCCceeeEEc----cCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            45555555544    66666 99999999999999999764   444444 48899999999976  9999999999999


Q ss_pred             EeCCCCC
Q 016134          387 WKLLAKP  393 (394)
Q Consensus       387 Wd~~~~~  393 (394)
                      ||+..++
T Consensus       375 WDlsvE~  381 (440)
T KOG0302|consen  375 WDLSVEA  381 (440)
T ss_pred             EEeeccC
Confidence            9998654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1.9e-19  Score=158.07  Aligned_cols=227  Identities=19%  Similarity=0.280  Sum_probs=172.6

Q ss_pred             cccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcE
Q 016134          140 HWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEV  216 (394)
Q Consensus       140 ~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v  216 (394)
                      -++|.+..-|    .|+|.|+.++ ++...+.+|..+|+.|.|.|+. ++|+++|.|..  +|++++..++.+       
T Consensus       106 p~la~~G~~G----vIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V-------  173 (385)
T KOG1034|consen  106 PFLAAGGYLG----VIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV-------  173 (385)
T ss_pred             eeEEeeccee----EEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE-------
Confidence            3444444444    9999999887 8899999999999999999964 78999999999  699999998743       


Q ss_pred             EEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc------ee-------------------E
Q 016134          217 YSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE------PV-------------------M  269 (394)
Q Consensus       217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~------~~-------------------~  269 (394)
                                 .|+..+|...|.++.|+  +.+|++++.|.++++|++...+      +.                   .
T Consensus       174 -----------fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  174 -----------FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             -----------ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence                       34566999999999998  7899999999999999997311      00                   0


Q ss_pred             ---EEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEe-CCCceeeEe---------ec-ccCC-cceEEEEeeECCCCCcE
Q 016134          270 ---TLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFA-TGRGNLEAA---------YT-HKED-NGVLALGGLNDPDGKPV  334 (394)
Q Consensus       270 ---~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~-~~~~~~~~~---------~~-~~~~-~~~~~~~~~~s~~g~~~  334 (394)
                         +-.-|...|-|+.|.|+++++=+-++.|..|.. .-.+.+...         .. ..-+ ..+.-+...|+|-++ +
T Consensus       243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~  321 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M  321 (385)
T ss_pred             cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence               113477788888888999999999999999976 211111111         11 1111 122333445788888 8


Q ss_pred             EEEEeCCCeEEEEECCCCcee--EEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          335 LICACNDNTVHLYELPSFMER--GRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~~--~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ||.|...|.|.+||++..++.  .++.+   ...|+..+|+.|+ .|+...+|+.|.-||.-
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            999999999999999987653  22322   5569999999999 89999999999999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=5e-17  Score=150.13  Aligned_cols=271  Identities=15%  Similarity=0.200  Sum_probs=189.1

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCC----CCeEEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeC
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDE----CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSR  194 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~----~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~  194 (394)
                      ...||...|.+++ .+|+.-.++++-..|-.    --.+||||..+- .-++.+-.-...|.+++|++  .|.+|+....
T Consensus        99 ~y~GH~ddikc~~-vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L-~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~  176 (626)
T KOG2106|consen   99 HYLGHNDDIKCMA-VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL-STLHVIGFFDRGVTCVAFSKINGGSLLCAVDD  176 (626)
T ss_pred             cccCCCCceEEEe-ecCCceeeccCcccccCCCcCCCeeeecccccc-eeeeeeccccccceeeeecccCCCceEEEecC
Confidence            4568888999999 99999999977665522    236999997664 55667767788999999987  3455555544


Q ss_pred             CCc----eeecCCCcEE-EecCCCCcEEEEEEcCC---EEEEEecC---------------------CCCCCEEEEEec-
Q 016134          195 DGT----AWNIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQD---------------------GHTRPVTCLAVG-  244 (394)
Q Consensus       195 Dg~----vWd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~~---------------------~h~~~V~~l~~~-  244 (394)
                      ...    |||++.+... ........|....|+|.   .+++.+..                     .....|.|++|. 
T Consensus       177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e  256 (626)
T KOG2106|consen  177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE  256 (626)
T ss_pred             CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence            333    7999987766 44555666778888876   44444332                     123679999998 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCc-----------eeeEee
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRG-----------NLEAAY  312 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~-----------~~~~~~  312 (394)
                      +.-+++|..+|.|.||+..+.+..++...|.+.|.+++.. +..|++|+.|+.|..||-.-.+           .++.+.
T Consensus       257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence            6779999999999999999888877777999999999988 6678889999999999822110           011111


Q ss_pred             cccCC-------------------------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECC-----------------
Q 016134          313 THKED-------------------------NGVLALGGLNDPDGKPVLICACNDNTVHLYELP-----------------  350 (394)
Q Consensus       313 ~~~~~-------------------------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-----------------  350 (394)
                      .....                         ...--+-.+.+|+.. ++++++.|+.+++|+-.                 
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~f  415 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADF  415 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEeec
Confidence            00000                         000001122355555 78888888888888721                 


Q ss_pred             ---------------------CCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCCC
Q 016134          351 ---------------------SFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKPS  394 (394)
Q Consensus       351 ---------------------~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~~  394 (394)
                                           +...+.......++++++|+|+| +||.|+.|+.|.||.++..++
T Consensus       416 hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  416 HPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             cCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence                                 11111111125579999999999 999999999999999887653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.81  E-value=3.5e-18  Score=162.96  Aligned_cols=289  Identities=19%  Similarity=0.228  Sum_probs=195.0

Q ss_pred             cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--
Q 016134           87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL--  164 (394)
Q Consensus        87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~--  164 (394)
                      ++-|+.++.++++--.+..+....          -..||.-.|++++ |+.-+. --....+++.|.+||||.+.-+.  
T Consensus       162 la~Ggs~~~v~~~s~~~d~f~~v~----------el~GH~DWIrsl~-f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~  229 (764)
T KOG1063|consen  162 LACGGSKFVVDLYSSSADSFARVA----------ELEGHTDWIRSLA-FARLGG-DDLLLASSSQDRYIRIWRIVLGDDE  229 (764)
T ss_pred             EEecCcceEEEEeccCCcceeEEE----------Eeeccchhhhhhh-hhccCC-CcEEEEecCCceEEEEEEEEecCCc
Confidence            345666777777766655543222          4668998999998 654322 00113466778899999873221  


Q ss_pred             ------------------eEE----------EEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE--------
Q 016134          165 ------------------TML----------AKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE--------  206 (394)
Q Consensus       165 ------------------~~~----------~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~--------  206 (394)
                                        ...          ..+.||.+-|+++.|+|++..|++++.|.+  ||.-++..-        
T Consensus       230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl  309 (764)
T KOG1063|consen  230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL  309 (764)
T ss_pred             cccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe
Confidence                              111          223599999999999999999999999998  354333210        


Q ss_pred             ---------------------------------------------EEecCCCCcEEEEEEcCC--EEEEEecC-------
Q 016134          207 ---------------------------------------------FSLDGPVGEVYSMVVANE--MLFAGAQD-------  232 (394)
Q Consensus       207 ---------------------------------------------~~~~~~~~~v~~l~~~~~--~l~~~~~~-------  232 (394)
                                                                   ..+.+|.+.|..++|.|.  +|++.+.|       
T Consensus       310 Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  310 GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence                                                         012345556666666654  55555555       


Q ss_pred             ---------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC-------------------------------
Q 016134          233 ---------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT-------------------------------  264 (394)
Q Consensus       233 ---------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~-------------------------------  264 (394)
                                     -|.-.++|+++-  .-.+++|...+.+|+|+...                               
T Consensus       390 ~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGL  469 (764)
T KOG1063|consen  390 RWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGL  469 (764)
T ss_pred             ccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccc
Confidence                           244455666653  23466666666666666520                               


Q ss_pred             ------------C---------------------------------ceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---
Q 016134          265 ------------L---------------------------------EPVMTLNDHTDAPMSLLCW--DQFLLSCSLD---  294 (394)
Q Consensus       265 ------------~---------------------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D---  294 (394)
                                  +                                 -.++.+.+|...|++++.+  ++++|+++..   
T Consensus       470 SnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~  549 (764)
T KOG1063|consen  470 SNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK  549 (764)
T ss_pred             cCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc
Confidence                        0                                 0122345678889999998  8899998854   


Q ss_pred             --CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-----ecCCcEEEE
Q 016134          295 --HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-----FSKHEVRVI  367 (394)
Q Consensus       295 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~~~v~~l  367 (394)
                        ..|++|+..+....+.+..|.-.++.+    .|+||++ +|++.+.|+++.+|..........-     .|..-|+.+
T Consensus       550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l----~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc  624 (764)
T KOG1063|consen  550 EHAVIRLWNTANWLQVQELEGHSLTVTRL----AFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC  624 (764)
T ss_pred             cceEEEEEeccchhhhheecccceEEEEE----EECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence              469999999888888777776444333    4699999 8999999999999998654221111     123349999


Q ss_pred             EECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          368 EIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       368 ~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .|+|++ +++|+|.|.+|++|.....
T Consensus       625 sW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  625 SWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccCcccceeEEecCCceEEEEeccCc
Confidence            999999 8999999999999998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=2.3e-18  Score=154.59  Aligned_cols=207  Identities=21%  Similarity=0.306  Sum_probs=165.1

Q ss_pred             EEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          168 AKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      -.+.||+++|.+++|+| +...|||||.|.+  ||++..+....  .+..+|..+            .+|...|--++|+
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~--~ltepvv~L------------~gH~rrVg~V~wH  140 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR--DLTEPVVEL------------YGHQRRVGLVQWH  140 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--CcccceEEE------------eecceeEEEEeec
Confidence            34578999999999999 5678999999998  69997765432  111223222            2899999999998


Q ss_pred             ---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134          245 ---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG  319 (394)
Q Consensus       245 ---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  319 (394)
                         .+.|++++.|.+|.|||+.+++.+.++. |.+.|+++.|+  |.+|++.+.|..|||||.++++.+..-..|.....
T Consensus       141 PtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~  219 (472)
T KOG0303|consen  141 PTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP  219 (472)
T ss_pred             ccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc
Confidence               5889999999999999999999999988 99999999999  89999999999999999999998888777766555


Q ss_pred             eEEEEeeECCCCCcEEEEEe---CCCeEEEEECCCCceeE---EEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          320 VLALGGLNDPDGKPVLICAC---NDNTVHLYELPSFMERG---RIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs---~dg~I~iwd~~~~~~~~---~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..++   |-.++. ++.+|-   .+..+-+||..+.+...   .+.....|.---+.+|.  ..++|=.|+.|+-|++..
T Consensus       220 ~Rai---fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  220 ARAI---FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ceeE---EeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            4444   567887 666663   47889999987765443   33336667777788887  667777999999999987


Q ss_pred             CC
Q 016134          392 KP  393 (394)
Q Consensus       392 ~~  393 (394)
                      ++
T Consensus       296 d~  297 (472)
T KOG0303|consen  296 EP  297 (472)
T ss_pred             CC
Confidence            65

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.1e-18  Score=158.73  Aligned_cols=207  Identities=20%  Similarity=0.283  Sum_probs=153.8

Q ss_pred             eEEEEecC-------CCCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          177 VSGIALPL-------RSDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       177 V~~l~~s~-------~~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      -.|++|..       .|+++|.|..|..  |||+.-...+    .+-....++... .   .--.-+..+|+..|.+|.|
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k-~---~k~~~~~~gHTdavl~Ls~  251 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK-K---GKRSNSASGHTDAVLALSW  251 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh-h---cccccccccchHHHHHHHh
Confidence            35666632       3689999999998  6998643322    111000000000 0   0000012279999999999


Q ss_pred             c---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          244 G---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       244 ~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      +   .+.|++||.|.+|++||+.++++..++..|...|.++.|+   +.+|++|+.|++|.+.|.|..............
T Consensus       252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~  331 (463)
T KOG0270|consen  252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE  331 (463)
T ss_pred             ccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence            8   5789999999999999999999999999999999999999   789999999999999999964444333333333


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      +..+.    |+|.....++++..||+|+-+|+++. +++.++.. ..+|.+|++++.-  +++|++.|+.|++|++..
T Consensus       332 VEkv~----w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  332 VEKVA----WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             eEEEE----ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            44444    46666668899999999999999987 55655554 7789999999876  999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=3.1e-18  Score=157.72  Aligned_cols=259  Identities=15%  Similarity=0.160  Sum_probs=188.0

Q ss_pred             CCCCCcccccccCCCC----CCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC--
Q 016134           90 GSEDRIPHVRNRENPG----YTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG--  163 (394)
Q Consensus        90 ~s~d~~~~~w~~~~~~----~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~--  163 (394)
                      +|...++++||...-.    +..++          -..    .+.++. |+...+ +..+...  .|..+++|.-...  
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t----------~~p----g~~s~~-w~~~n~-lvvas~~--gdk~~~~~~K~g~~~   69 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQT----------AEP----GDFSFN-WQRRNF-LVVASMA--GDKVMRIKEKDGKTP   69 (673)
T ss_pred             eccCCceEEeecccccCccccccCC----------CCC----cceeee-ccccce-EEEeecC--CceeEEEecccCCCC
Confidence            4556678999987543    22221          111    255555 655444 4434443  4568999986433  


Q ss_pred             -ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          164 -LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       164 -~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                       ...+..+.+.  .-.|++......++++|+..+.  |||++...+.+                     ...+|...|++
T Consensus        70 ~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---------------------~lkdh~stvt~  126 (673)
T KOG4378|consen   70 EVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---------------------FLKDHQSTVTY  126 (673)
T ss_pred             ccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---------------------hccCCcceeEE
Confidence             2223333332  4455555555689999999998  79999655443                     12278888999


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeec-
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-APMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT-  313 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-  313 (394)
                      +.++  ..+||+++..|.|.|..+.++....+|....+ .|.-+.|+   ..+|.+++.+|.|.+||+....++..+.. 
T Consensus       127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~  206 (673)
T KOG4378|consen  127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA  206 (673)
T ss_pred             EEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh
Confidence            9887  68999999999999999999888777775434 44577787   34788899999999999987655544432 


Q ss_pred             ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |..+...+    +|+|....+|++.+.|..|.+||.+.......+...++...++|+++| +|+.|...|.|..||+...
T Consensus       207 HsAP~~gi----cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  207 HSAPCRGI----CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             ccCCcCcc----eecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            43333333    468888879999999999999999998888888889999999999999 9999999999999999876


Q ss_pred             C
Q 016134          393 P  393 (394)
Q Consensus       393 ~  393 (394)
                      +
T Consensus       283 k  283 (673)
T KOG4378|consen  283 K  283 (673)
T ss_pred             C
Confidence            5

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=6.4e-18  Score=154.34  Aligned_cols=261  Identities=19%  Similarity=0.236  Sum_probs=185.1

Q ss_pred             CCCCccceeeecccccccc--ccCCCeecCCCCCeEEEEEcC---CCceEEEEecccCCCeEEEEecC-CCCEEEEEeCC
Q 016134          122 ESGDKSTSKKTTLKNVCCH--WLLGNCVRGDECRFLHSWFCG---EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRD  195 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~i~iWd~~---~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~D  195 (394)
                      .+-+.+.|++++ |.|+..  .+|    .|++.|.|-+||+.   ....-+..+..|..+|.+|.|+| +-..+++.|.|
T Consensus       182 ~kv~~~Rit~l~-fHPt~~~~lva----~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  182 AKVTDRRITSLA-FHPTENRKLVA----VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eEecccceEEEE-ecccCcceEEE----EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            334557889998 999766  344    45666699999994   33355778889999999999999 45789999999


Q ss_pred             Cce--eecCCCcEE---EecCCCCcEEEEEEcCC---EEEEEecC------------------CCCCCEEEEEec---CC
Q 016134          196 GTA--WNIESSAEF---SLDGPVGEVYSMVVANE---MLFAGAQD------------------GHTRPVTCLAVG---RS  246 (394)
Q Consensus       196 g~v--Wd~~~~~~~---~~~~~~~~v~~l~~~~~---~l~~~~~~------------------~h~~~V~~l~~~---~~  246 (394)
                      |+|  =|++.+..-   .+......+..+.|+.+   .++....+                  -|...|..|+++   +.
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            994  555544322   22223334445555544   22222222                  578899999998   57


Q ss_pred             eEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeC----CCceeeEeecccC
Q 016134          247 RLCSGSMDNTIRVWELDTLEP----VMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFAT----GRGNLEAAYTHKE  316 (394)
Q Consensus       247 ~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~----~~~~~~~~~~~~~  316 (394)
                      +|++++.|++++|||++....    +.....|...|.+..|+  +..|++.+.|..|+|||..    ...+...+. |..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            899999999999999986332    23334699999999999  4559999999999999983    333333333 332


Q ss_pred             C--cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEE-EEECCCC--EEEEEeCCCeEEEEeC
Q 016134          317 D--NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRV-IEIGPDK--LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       317 ~--~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~-l~~sp~~--~l~tgs~Dg~I~vWd~  389 (394)
                      .  .....+...|.|+.. ++++|-.-..|-|||-..++.+..+..  ...|.+ ..|+|-+  +++-++..|.|.||--
T Consensus       416 ~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence            2  234455667899887 999999999999999999887777655  224544 4799987  4555557788888854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=1.3e-17  Score=158.45  Aligned_cols=248  Identities=14%  Similarity=0.174  Sum_probs=191.6

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      +.|..++ +.|+|..+..+.-+     .+.++|.+++ .+++++++|++.|++++|+.||++++||+.|..  ||+-+-.
T Consensus        13 hci~d~a-fkPDGsqL~lAAg~-----rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   13 HCINDIA-FKPDGTQLILAAGS-----RLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             cchheeE-ECCCCceEEEecCC-----EEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            3777888 99998887543322     7999999988 889999999999999999999999999999999  5986544


Q ss_pred             cEEEecCCCCcEEEEEEcCC--EEEEEecC---------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC
Q 016134          205 AEFSLDGPVGEVYSMVVANE--MLFAGAQD---------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~--~l~~~~~~---------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      ..+ ...|...|.+|.|+|-  .+++++..               .....|.+.+|.  |.+|+.|-.||+|.|-+- ++
T Consensus        86 G~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~g  163 (1081)
T KOG1538|consen   86 GIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NG  163 (1081)
T ss_pred             cee-eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CC
Confidence            443 3578889999999996  66666655               234567788886  889999999999999874 34


Q ss_pred             ceeEEEc---CCCCCcEEEEEc-------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEE
Q 016134          266 EPVMTLN---DHTDAPMSLLCW-------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL  335 (394)
Q Consensus       266 ~~~~~~~---~h~~~v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l  335 (394)
                      ++...++   +..++|.+++|+       .+.+++.....++.++.+. ++.+..-........    +..+-++|+ ++
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~----CisYf~NGE-y~  237 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPC----CISYFTNGE-YI  237 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCch----hheeccCCc-EE
Confidence            5444443   467899999998       3578888888999998875 343333222222222    334578999 77


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          336 ICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       336 ~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +.|+.|+.+++|- +.+-.+.++.. .++|+.++..|++ +++.|+.||+|-.|++-
T Consensus       238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            7888999999995 44656666655 7889999999999 99999999999988864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=140.91  Aligned_cols=239  Identities=16%  Similarity=0.156  Sum_probs=169.6

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcC---------CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce-
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---------EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-  198 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v-  198 (394)
                      |-+-+ ++|+++|++.+..+|    .|-+..++         .+..++...++|.++|+.++|.  ..+|++|+. |.| 
T Consensus        13 vf~qa-~sp~~~~l~agn~~G----~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~   84 (325)
T KOG0649|consen   13 VFAQA-ISPSKQYLFAGNLFG----DIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVY   84 (325)
T ss_pred             HHHHh-hCCcceEEEEecCCC----eEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEE
Confidence            33334 899999988777776    78888764         3345667779999999999997  456777765 775 


Q ss_pred             -eecCCCcE----EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          199 -WNIESSAE----FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       199 -Wd~~~~~~----~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                       |.+.....    ..+.....+...            .-..-.+|+++-.+  .+-++.++.|+.++-||+++++..+++
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~------------~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQV------------DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCcccc------------CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence             55543222    111110000000            00123467777766  455666668999999999999999999


Q ss_pred             cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE----EEEeeECCCCCcEEEEEeCCCeEE
Q 016134          272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL----ALGGLNDPDGKPVLICACNDNTVH  345 (394)
Q Consensus       272 ~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~g~~~l~sgs~dg~I~  345 (394)
                      ++|++.|.++.--  ...+++|++||++|+||+++++++..+...+.+....    .+..+..-+.. +|++|+ ...+.
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~ls  230 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLS  230 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecC-CCcee
Confidence            9999999999874  6789999999999999999999888876544331110    11111233444 888776 46799


Q ss_pred             EEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          346 LYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       346 iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      +|++++.+....+.-...+..+.|..| .++++++.+.|.-|.+.
T Consensus       231 lwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  231 LWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeec
Confidence            999999999998888889999999866 77777777778877654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=152.37  Aligned_cols=253  Identities=14%  Similarity=0.179  Sum_probs=186.9

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc--eeecC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT--AWNIE  202 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~--vWd~~  202 (394)
                      ..|+++. |.|....+.++..++    .++||.+... ...++.+.--.-+|.+.+|.|+|+ .+++++....  .||++
T Consensus       214 ~~I~sv~-FHp~~plllvaG~d~----~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  214 GGITSVQ-FHPTAPLLLVAGLDG----TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CCceEEE-ecCCCceEEEecCCC----cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            6889999 999888888777776    9999998533 145666666788999999999998 8888887776  59999


Q ss_pred             CCcEEEecC---CC-CcEEEEEEcCC--EEEEEecCC-----------------CCCCEEEEEec--CCeEEEEeCCCeE
Q 016134          203 SSAEFSLDG---PV-GEVYSMVVANE--MLFAGAQDG-----------------HTRPVTCLAVG--RSRLCSGSMDNTI  257 (394)
Q Consensus       203 ~~~~~~~~~---~~-~~v~~l~~~~~--~l~~~~~~~-----------------h~~~V~~l~~~--~~~l~sgs~Dg~V  257 (394)
                      +.+...+..   +. ..+....++++  +++..+..+                 ..+.|..+.|+  +..|++++.+|.|
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceE
Confidence            988764432   22 23445555665  555554442                 24677788886  6778888889999


Q ss_pred             EEEeCCCCceeEEEcCCCCCc--EEEEEc--CCEEEEEeCCCcEEEEEeCC------CceeeEeecccCCcceEEEEeeE
Q 016134          258 RVWELDTLEPVMTLNDHTDAP--MSLLCW--DQFLLSCSLDHTIKVWFATG------RGNLEAAYTHKEDNGVLALGGLN  327 (394)
Q Consensus       258 ~iwd~~~~~~~~~~~~h~~~v--~~l~~~--~~~l~s~s~Dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~  327 (394)
                      .+||++...+++.+... +.|  ++++.+  +.+||+|+..|.|.|||..+      ++++..+......+.    ...|
T Consensus       369 ~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It----sl~F  443 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT----SLQF  443 (514)
T ss_pred             EEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee----eeee
Confidence            99999999999998743 333  344433  89999999999999999653      233333322222222    2347


Q ss_pred             CCCCCcEEEEEe--CCCeEEEEECCCCceeEEEec----CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          328 DPDGKPVLICAC--NDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       328 s~~g~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +++.+ +|+.++  .+..+++-.+++......++.    -+.|+|++|+|.+ +|+.|..+|+|.+|.+.
T Consensus       444 n~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  444 NHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             Ccchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99998 776665  467899999998766655554    3469999999987 99999999999999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=8.8e-18  Score=158.73  Aligned_cols=151  Identities=21%  Similarity=0.208  Sum_probs=117.5

Q ss_pred             CCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEE
Q 016134          235 TRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL-------EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       235 ~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~-------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd  301 (394)
                      ...|+.+.|+   ...|++++.||.|+||.+..+       ++...+..|...|+++.|+   .+.|++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            4568888887   578999999999999998653       3566788899999999999   68999999999999999


Q ss_pred             eCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ec--CCcEEEEEECCCC-EEEE
Q 016134          302 ATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FS--KHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~--~~~v~~l~~sp~~-~l~t  377 (394)
                      +++.+....+..|...+..+    +|+|+|+ .+++.+.||+|++|+.++.+....- ..  ...-..|.|.-|| +++.
T Consensus       707 l~~~~~~~~l~gHtdqIf~~----AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGI----AWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             hhhhhhhheeccCcCceeEE----EECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence            99998888888887654333    4699999 9999999999999999887543322 11  2233456677788 6555


Q ss_pred             EeCC----CeEEEEeCC
Q 016134          378 GDGA----GMLGVWKLL  390 (394)
Q Consensus       378 gs~D----g~I~vWd~~  390 (394)
                      .+.|    .+|.+||.+
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             ecccccchhhhhhhhhh
Confidence            5544    356777654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.1e-17  Score=142.94  Aligned_cols=219  Identities=15%  Similarity=0.220  Sum_probs=152.7

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc-----EEEecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA-----EFSLDGPVGEVYSMVVANE--MLFAGAQD-----  232 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~-----~~~~~~~~~~v~~l~~~~~--~l~~~~~~-----  232 (394)
                      +..|++|.+.|++++|+.||++|+|++.|+.  ||+++.-.     +++..-..+.-+.+.|.||  .+++....     
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4577999999999999999999999999999  69987533     2344444557788999998  33322222     


Q ss_pred             --------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134          233 --------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       233 --------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  284 (394)
                                                .|.-.|..+-..  +.+|++++.|.+|.|||++ |+.++.+......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence                                      244445444443  5789999999999999999 89888887655555555555


Q ss_pred             --CCEEEEEeCCCcEEEEEeC---CCc-----eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC--
Q 016134          285 --DQFLLSCSLDHTIKVWFAT---GRG-----NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF--  352 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~~---~~~-----~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~--  352 (394)
                        |.++++++.---|++|.+-   .++     .+..+.+|...  +.  ..+|+++.. .+++.+.||+++|||+.-.  
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa--V~--~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA--VL--AAAFSNSST-RAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh--ee--eeeeCCCcc-eeEEEecCCcEEEeeccceEe
Confidence              8999999999999999853   121     22334444433  33  334799888 8999999999999997532  


Q ss_pred             -----ceeEEE---ec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          353 -----MERGRI---FS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       353 -----~~~~~~---~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                           +.+...   .+  ......++.+|++.++..+....|+++..+.
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~  361 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED  361 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence                 111111   11  3334589999999444444555688887654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.2e-17  Score=141.23  Aligned_cols=203  Identities=17%  Similarity=0.242  Sum_probs=149.2

Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----  244 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----  244 (394)
                      .+|++-|.++.|++.|+++|||+.|++  |||.+.....                 .-++.....|.+.|..+.|-    
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~-----------------W~~Ts~Wrah~~Si~rV~WAhPEf   72 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT-----------------WSCTSSWRAHDGSIWRVVWAHPEF   72 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----------------eEEeeeEEecCCcEEEEEecCccc
Confidence            479999999999999999999999999  7997543321                 22334555889999999995    


Q ss_pred             CCeEEEEeCCCeEEEEeCC---------CCceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134          245 RSRLCSGSMDNTIRVWELD---------TLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~---------~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~  311 (394)
                      |+.+|+++.|+++.||.-.         ......++....+.|+.+.|.    |-.|++++.||.||||+..+...+...
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence            7889999999999999752         122455677778899999998    678999999999999987665443332


Q ss_pred             ec---------ccCCcceEEEEeeECC--CCCcEEEEEeCC-----CeEEEEECCCCc----eeEEEec-CCcEEEEEEC
Q 016134          312 YT---------HKEDNGVLALGGLNDP--DGKPVLICACND-----NTVHLYELPSFM----ERGRIFS-KHEVRVIEIG  370 (394)
Q Consensus       312 ~~---------~~~~~~~~~~~~~~s~--~g~~~l~sgs~d-----g~I~iwd~~~~~----~~~~~~~-~~~v~~l~~s  370 (394)
                      .-         ........+.++.|+|  -..++|+.|+.+     +.++||......    .+.++.. ..+|+.|+|.
T Consensus       153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA  232 (361)
T ss_pred             hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence            21         1111222333334443  344588888866     589999876553    2223333 7789999999


Q ss_pred             CCC-----EEEEEeCCCeEEEEeCCC
Q 016134          371 PDK-----LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       371 p~~-----~l~tgs~Dg~I~vWd~~~  391 (394)
                      |+-     +||+++.|| |+||.+..
T Consensus       233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  233 PNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             cccCCceeeEEEeecCc-EEEEEEee
Confidence            973     899999999 99999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=5.4e-18  Score=159.30  Aligned_cols=276  Identities=13%  Similarity=0.094  Sum_probs=185.1

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccccc-----------------CCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWL-----------------LGN  145 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~-----------------~~~  145 (394)
                      -+.|+++||.|+++|||.+.|+.+..+-.--+.+....|.++....|-.++ .-.|-..+                 +.+
T Consensus       411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~  489 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASA  489 (733)
T ss_pred             CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhcC
Confidence            455999999999999999999987543322222233335555444444444 22221111                 111


Q ss_pred             eecCCCCCeEEEEEcCC---CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEE-EecCCCCcE
Q 016134          146 CVRGDECRFLHSWFCGE---GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEF-SLDGPVGEV  216 (394)
Q Consensus       146 ~~~g~~~~~i~iWd~~~---~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~-~~~~~~~~v  216 (394)
                      -.....+..+-.|.-..   ...-+.....|...|..|.|+..|+||++...++.     |.++...... .+.      
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~------  563 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR------  563 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh------
Confidence            11123345566786542   12224555679999999999999999999988765     4666544433 111      


Q ss_pred             EEEEEcCCEEEEEecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe
Q 016134          217 YSMVVANEMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS  292 (394)
Q Consensus       217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s  292 (394)
                                      ...+.|.++.|++  .+|++++ ...|+|||+...+.++.+......|.+++.+  |+.|+.++
T Consensus       564 ----------------kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  564 ----------------KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             ----------------hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence                            1234566667763  3455554 4789999999888888887777888899888  79999999


Q ss_pred             CCCcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC------CCceeE---EEec--
Q 016134          293 LDHTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP------SFMERG---RIFS--  360 (394)
Q Consensus       293 ~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~------~~~~~~---~~~~--  360 (394)
                      .|+.+..+|+.-. ++.+++..|......++    |++.-. ++++|+.|+++.||.-.      ..-++.   .+.+  
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va----~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~  701 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA----FHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE  701 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhh----hccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence            9999999999754 45555666665555444    477666 99999999999998532      121222   2222  


Q ss_pred             ---CCcEEEEEECCCC-EEEEEeCCCeEEEE
Q 016134          361 ---KHEVRVIEIGPDK-LFFTGDGAGMLGVW  387 (394)
Q Consensus       361 ---~~~v~~l~~sp~~-~l~tgs~Dg~I~vW  387 (394)
                         .-.|..+.|+|.. .|++++.||+|++|
T Consensus       702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecccceEeecccCCCceEEecCCCceEEee
Confidence               2347888899999 99999999999998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=8.3e-18  Score=143.77  Aligned_cols=253  Identities=18%  Similarity=0.224  Sum_probs=178.5

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      .++|...++++. |....+ +    ++|...|.|++|++.+. ..+..++ .|...|+.+.--|+ ..|.+-+.|..  +
T Consensus        10 LRp~~~~v~s~~-fqa~~r-L----~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen   10 LRPHSSSVTSVL-FQANER-L----MSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             eccccchheehh-hccchh-h----hcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            446667777777 555444 3    34555569999999887 5566666 67889999999887 67889999998  5


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC----------------------------------CCCCCEEEEEec
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD----------------------------------GHTRPVTCLAVG  244 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~----------------------------------~h~~~V~~l~~~  244 (394)
                      |++.....+.+.  .-.++++.|.+..+......                                  +..+.+.|..+.
T Consensus        82 w~ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   82 WTIAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            998875544221  12233333332211111110                                  455677777764


Q ss_pred             ---CC--eEEEEeCCCeEEEEeCCCCcee----------EEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc-
Q 016134          245 ---RS--RLCSGSMDNTIRVWELDTLEPV----------MTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG-  306 (394)
Q Consensus       245 ---~~--~l~sgs~Dg~V~iwd~~~~~~~----------~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~-  306 (394)
                         +.  +++.|.++|.|.+||+.++..+          .....|..+|.++.|.  -..=++++.+..+..|.+.... 
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence               22  4788889999999999987433          3344588999999998  3455677888889999887541 


Q ss_pred             e--eeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCC
Q 016134          307 N--LEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       307 ~--~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                      .  +..... .......+.+    -||++ ++|+++.|+.||||+.++...+..+.. ...|++++|+|+. ++|.++.|
T Consensus       240 slq~~~e~~lknpGv~gvrI----RpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD  314 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRI----RPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD  314 (323)
T ss_pred             cccccceEEecCCCccceEE----ccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence            1  111111 2222333344    78999 999999999999999999998877754 7889999999996 99999999


Q ss_pred             CeEEEEeC
Q 016134          382 GMLGVWKL  389 (394)
Q Consensus       382 g~I~vWd~  389 (394)
                      ++|.+|++
T Consensus       315 ~rISLWkL  322 (323)
T KOG0322|consen  315 ARISLWKL  322 (323)
T ss_pred             ceEEeeec
Confidence            99999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.78  E-value=5e-18  Score=156.53  Aligned_cols=215  Identities=16%  Similarity=0.241  Sum_probs=165.5

Q ss_pred             CCeEEEEEcCCC--ceEEEEecc--cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEEEEcCC
Q 016134          152 CRFLHSWFCGEG--LTMLAKLEG--HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSMVVANE  224 (394)
Q Consensus       152 ~~~i~iWd~~~~--~~~~~~l~~--h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~  224 (394)
                      -+.|+|||+...  ..++..|..  ....|.++.+.|||+.|++|+.-.+  |||+....... ..-.            
T Consensus       439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt------------  506 (705)
T KOG0639|consen  439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT------------  506 (705)
T ss_pred             CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC------------
Confidence            458999999533  234444433  3567999999999999999999666  79998665421 1000            


Q ss_pred             EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                              .-...+.+|+.+  .++.+++..||.|.|||+.+...++.|++|++.+.||..+  |..|.+|+.|++||.|
T Consensus       507 --------ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW  578 (705)
T KOG0639|consen  507 --------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW  578 (705)
T ss_pred             --------CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence                    111233344444  5678889999999999999999999999999999999999  8899999999999999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEe
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs  379 (394)
                      |+++++.+..   |.....++++  -+.|.+. +|+.|-+++.+.|......+.-..-.++.-|.++.|.+-| .+++.+
T Consensus       579 Dlregrqlqq---hdF~SQIfSL--g~cP~~d-WlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  579 DLREGRQLQQ---HDFSSQIFSL--GYCPTGD-WLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             hhhhhhhhhh---hhhhhhheec--ccCCCcc-ceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence            9998766544   3333344444  4689998 9999999999999988766555444557779999999999 999999


Q ss_pred             CCCeEEEEeCCCC
Q 016134          380 GAGMLGVWKLLAK  392 (394)
Q Consensus       380 ~Dg~I~vWd~~~~  392 (394)
                      .|..+..|.....
T Consensus       653 kDnlLnawrtPyG  665 (705)
T KOG0639|consen  653 KDNLLNAWRTPYG  665 (705)
T ss_pred             chhhhhhccCccc
Confidence            9999999987543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.7e-18  Score=172.26  Aligned_cols=231  Identities=19%  Similarity=0.280  Sum_probs=177.7

Q ss_pred             ccccccc----cCCCeecCCCCCeEEEEEcCC-----CceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecC
Q 016134          135 KNVCCHW----LLGNCVRGDECRFLHSWFCGE-----GLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIE  202 (394)
Q Consensus       135 ~~~~~~~----~~~~~~~g~~~~~i~iWd~~~-----~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~  202 (394)
                      |.+.+.-    ||+++.+|    .|.+||...     ....+.++..|++.|..|.|++.. +.||+|+.||.  |||+.
T Consensus        72 W~~~g~~~~GlIaGG~edG----~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln  147 (1049)
T KOG0307|consen   72 WGSYGSHSHGLIAGGLEDG----NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN  147 (1049)
T ss_pred             ecccCCCccceeeccccCC----ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence            5554444    55555555    999999853     246778888999999999999965 59999999999  69998


Q ss_pred             CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC--C
Q 016134          203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD--A  277 (394)
Q Consensus       203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~--~  277 (394)
                      .-+.....+.                   ..-...|.+|+|+   ...|++++.+|.+.|||++..+++..+..+..  .
T Consensus       148 n~~tP~~~~~-------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~  208 (1049)
T KOG0307|consen  148 KPETPFTPGS-------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH  208 (1049)
T ss_pred             CcCCCCCCCC-------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence            7443211110                   0345789999998   46799999999999999999888888876655  3


Q ss_pred             cEEEEEc---CCEEEEEeCCC---cEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          278 PMSLLCW---DQFLLSCSLDH---TIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       278 v~~l~~~---~~~l~s~s~Dg---~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      +..+.|+   ...|++++.|.   .|.+||+|.... ++.+..|..  .++++.  |.+.+..+|++++.|+.|.+|+.+
T Consensus       209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~--Gilsls--Wc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR--GILSLS--WCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc--ceeeec--cCCCCchhhhcccCCCCeeEecCC
Confidence            6788888   34666776654   699999987544 444445553  455554  455564599999999999999999


Q ss_pred             CCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          351 SFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       351 ~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +++.+..+.. ..++..+.|.|..  .|+.++-||.|.|+.+...
T Consensus       285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            9999999887 6779999999988  9999999999999998753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=2.7e-17  Score=144.38  Aligned_cols=286  Identities=18%  Similarity=0.215  Sum_probs=192.8

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCC-CCCccccccCCCCccceeeec------cccccccccCCC
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNS-SSASSTVSDESGDKSTSKKTT------LKNVCCHWLLGN  145 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s-~~~~~~~~~~~g~~~~v~~~~------~~~~~~~~~~~~  145 (394)
                      ..+..|+|  |++-|.+-|.|+.+++||+....+.....- +...--.+...-...+|-...      ...|...++|..
T Consensus        52 ~kgckWSP--DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSP--DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCC--CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            45778999  999999999999999999987665432110 000000000001111222211      123444444433


Q ss_pred             eecCCCCCeEEEEEcCCCceEEEEecc--cCCC---eEEEEecCCCCEEEEEeCCCc-eeec-CCCcEEEecCCCCcEEE
Q 016134          146 CVRGDECRFLHSWFCGEGLTMLAKLEG--HEKA---VSGIALPLRSDKLFSGSRDGT-AWNI-ESSAEFSLDGPVGEVYS  218 (394)
Q Consensus       146 ~~~g~~~~~i~iWd~~~~~~~~~~l~~--h~~~---V~~l~~s~~~~~l~sgs~Dg~-vWd~-~~~~~~~~~~~~~~v~~  218 (394)
                      .    .+.-|++||..++ ++...+.+  |.+.   -.+|+|+|||.+|+.|-.... |+|+ +.|...       +++.
T Consensus       130 s----r~~PIh~wdaftG-~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c-------~vy~  197 (406)
T KOG2919|consen  130 S----RDQPIHLWDAFTG-KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC-------PVYT  197 (406)
T ss_pred             c----ccCceeeeecccc-ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC-------cchh
Confidence            3    4448999999888 55555554  5444   467999999999998876655 6887 333321       1111


Q ss_pred             EEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC
Q 016134          219 MVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL  293 (394)
Q Consensus       219 l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~  293 (394)
                      ..+       ....+..+-|.|++|+   ...++.|+.-..+-||.-....+++.+-+|.+.|+.+.|.  |+.|++|+.
T Consensus       198 t~~-------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR  270 (406)
T KOG2919|consen  198 TVT-------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR  270 (406)
T ss_pred             hhh-------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc
Confidence            111       1122556778888887   3579999999999999988899999999999999999998  888888876


Q ss_pred             -CCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-CceeEEEec-CCcEEEEEE
Q 016134          294 -DHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-FMERGRIFS-KHEVRVIEI  369 (394)
Q Consensus       294 -Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~-~~~v~~l~~  369 (394)
                       |-.|..||+|..+ .+..+..|... +...+.+...|+++ +|++|+.||.|++||+.+ +..+..+.. ...++.+++
T Consensus       271 k~dkIl~WDiR~~~~pv~~L~rhv~~-TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRDPVYALERHVGD-TNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             CCCeEEEEeehhccchhhhhhhhccC-ccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence             7789999999754 34444444442 22222333588998 999999999999999998 454444433 677999999


Q ss_pred             CCCC-EEEEEeCC
Q 016134          370 GPDK-LFFTGDGA  381 (394)
Q Consensus       370 sp~~-~l~tgs~D  381 (394)
                      +|-- +++|++..
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9987 77777654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=3e-17  Score=142.15  Aligned_cols=241  Identities=15%  Similarity=0.143  Sum_probs=172.5

Q ss_pred             cccccCCCeecCCCCCeEEEEEcCCCc-eEEE-EecccCCCeEEEEecCCC-----CEEEEEeCCCceeecCCCcE-EEe
Q 016134          138 CCHWLLGNCVRGDECRFLHSWFCGEGL-TMLA-KLEGHEKAVSGIALPLRS-----DKLFSGSRDGTAWNIESSAE-FSL  209 (394)
Q Consensus       138 ~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~-~l~~h~~~V~~l~~s~~~-----~~l~sgs~Dg~vWd~~~~~~-~~~  209 (394)
                      ..+++|-+++..+....|.|-.+.... +.+. .-..|.-+++.+.|.|+.     ++|||.+.-=.+|.+...+. +..
T Consensus        58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~  137 (364)
T KOG0290|consen   58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVEL  137 (364)
T ss_pred             cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceeh
Confidence            456677777766666677777664221 2221 113699999999999976     46777665555899874321 111


Q ss_pred             cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCcEEEEE
Q 016134          210 DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE---PVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       210 ~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~  283 (394)
                      ..             .|-......+..+++++.|+   ++++.+.|-|-+..|||++++.   ...++-+|...|..++|
T Consensus       138 ~~-------------~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf  204 (364)
T KOG0290|consen  138 QS-------------VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF  204 (364)
T ss_pred             hh-------------hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence            00             00000112567899999997   7899999999999999999864   35567789999999999


Q ss_pred             c---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeC-CCeEEEEECCCCc-eeEE
Q 016134          284 W---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACN-DNTVHLYELPSFM-ERGR  357 (394)
Q Consensus       284 ~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~-dg~I~iwd~~~~~-~~~~  357 (394)
                      .   -+.|++++.||.+|+||+|..+.-..++....+ ...+.  .+|++...+++|+-.. ...|.|.|++... .+..
T Consensus       205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR--LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR--LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee--eccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            9   368999999999999999987766666654442 23333  3456666667776544 4679999999764 3444


Q ss_pred             Eec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCCC
Q 016134          358 IFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       358 ~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +.. ...|+.++|.|..  .|+|++.|.++.+||+++-+
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            443 7789999999987  99999999999999998755

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-16  Score=157.38  Aligned_cols=237  Identities=19%  Similarity=0.196  Sum_probs=182.8

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eec
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNI  201 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~  201 (394)
                      +|..--+.+. +.+.+.++.+...+|    .|++|+.....+.-.++.-+...|.+++..  +.+|++++.+++|  +.+
T Consensus        11 aht~G~t~i~-~d~~gefi~tcgsdg----~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLIC-YDPDGEFICTCGSDG----DIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEE-EcCCCCEEEEecCCC----ceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeC
Confidence            3443455666 889999887766666    899999865422223333388889888874  5599999999994  888


Q ss_pred             CCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEE
Q 016134          202 ESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIR  258 (394)
Q Consensus       202 ~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~  258 (394)
                      .+++.- .+....-++..++|+.+  .++.|+.|                  +|..+|.+|.|+  +++||+.+-||.|+
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence            877765 45566778889999887  78877777                  899999999998  68999999999999


Q ss_pred             EEeCCCCceeEEEcCC--------CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC
Q 016134          259 VWELDTLEPVMTLNDH--------TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       259 iwd~~~~~~~~~~~~h--------~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (394)
                      |||+.++.+..++.+-        ...+..++|+  +..|+..+.|+.|++|+....+....+..........  ...|+
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~--~~~ws  241 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS--DLQWS  241 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE--EEEEc
Confidence            9999998887776541        3345677888  5678888899999999999888877776654433322  34589


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~  373 (394)
                      |.|+ +||+++.||.|.|||..+.+.   ......|.+++|.|+.
T Consensus       242 PnG~-YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  242 PNGK-YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             CCCc-EEeeeccCCcEEEEecccchh---ccccceeEEEecCCCC
Confidence            9999 999999999999999998222   1125679999999987

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=2.6e-17  Score=154.74  Aligned_cols=218  Identities=16%  Similarity=0.232  Sum_probs=175.6

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC----EEEEEecC------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE----MLFAGAQD------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~~------  232 (394)
                      .+...+.||++.|.+|...|.|..|++|+.||+  ||.+.++.++......+.|.+|+|+|.    .|+++...      
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            566788999999999999999999999999999  799999999988888889999999987    44444333      


Q ss_pred             ------------------------------------------------CCCCCEEEEEec--CCeEEEEeCC---CeEEE
Q 016134          233 ------------------------------------------------GHTRPVTCLAVG--RSRLCSGSMD---NTIRV  259 (394)
Q Consensus       233 ------------------------------------------------~h~~~V~~l~~~--~~~l~sgs~D---g~V~i  259 (394)
                                                                      .|...|..+.|+  |++|++..-+   ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence                                                            477889999998  8899887654   57999


Q ss_pred             EeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134          260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       260 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                      +++...+....|..-.+.|.++.|+  ..+|++++. ..|++||+..+..++.+.........+++    +|.|. -|+.
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi----hp~GD-nli~  624 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI----HPNGD-NLIL  624 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee----cCCCC-eEEE
Confidence            9998776666666566789999999  456666654 78999999887777766655544455554    89898 5677


Q ss_pred             EeCCCeEEEEECCCCcee-EEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          338 ACNDNTVHLYELPSFMER-GRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       338 gs~dg~I~iwd~~~~~~~-~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      |+.|+.+..||+.-.... ..+. |...+++++|++.- +|++|+.||++.|+-
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            999999999999866433 3333 36679999999998 999999999999884

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=9e-18  Score=157.02  Aligned_cols=251  Identities=20%  Similarity=0.274  Sum_probs=170.6

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-------CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-------EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG  196 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg  196 (394)
                      -|.-.++... +.+..-.++++.    .+++|.+|++.       ...+++.+|.+|.++|.|+++.++++.+++|+.||
T Consensus       292 s~~d~ir~l~-~~~sep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALA-FHPSEPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             cchhhhhhhh-cCCCCCeEEEec----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            3334555555 555554555444    45599999982       23688999999999999999999999999999999


Q ss_pred             ce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134          197 TA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN  272 (394)
Q Consensus       197 ~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  272 (394)
                      +|  |++..... ....+..          ..+.+..-||+..|+.++++  .+.|++++.||+|++|+.....+ .+|.
T Consensus       367 ~I~~w~~p~n~d-p~ds~dp----------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~  434 (577)
T KOG0642|consen  367 TIRCWNLPPNQD-PDDSYDP----------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG  434 (577)
T ss_pred             eeeeeccCCCCC-cccccCc----------chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence            95  98762221 1111100          23444555999999999998  67899999999999999876555 3333


Q ss_pred             C--CCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCce---eeEeecccCCcc---eEEEEeeECCCCCcEEEEEeCCCeE
Q 016134          273 D--HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGN---LEAAYTHKEDNG---VLALGGLNDPDGKPVLICACNDNTV  344 (394)
Q Consensus       273 ~--h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~---~~~~~~~~~~~~---~~~~~~~~s~~g~~~l~sgs~dg~I  344 (394)
                      .  ..+...++.+-...++-...+...+.+++.+.+.   +..+.....+..   .....+..+|.+. +.+++..|+.|
T Consensus       435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~I  513 (577)
T KOG0642|consen  435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSI  513 (577)
T ss_pred             CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCce
Confidence            2  2344566766633222222233444444433332   222221111100   1111223477776 99999999999


Q ss_pred             EEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          345 HLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       345 ~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +++|..++..+..... ...++++++.|+| +|++++.|+.+++|.+..+
T Consensus       514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            9999999988876654 7789999999999 9999999999999998654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=2.8e-17  Score=150.18  Aligned_cols=205  Identities=20%  Similarity=0.229  Sum_probs=152.9

Q ss_pred             eEEEEecccCCCeEEEEecCCC--CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRS--DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      ....+.+-|.+.|++++|+|..  +++++|+.-|.  +||+.+.+...     ..|+            -...|..+|.+
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-----d~v~------------~f~~hs~~Vs~  239 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-----DGVY------------LFTPHSGPVSG  239 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-----CceE------------EeccCCccccc
Confidence            4456667789999999999955  57778888888  59996332210     0000            11167888888


Q ss_pred             EEec---CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce-eeEee
Q 016134          241 LAVG---RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN-LEAAY  312 (394)
Q Consensus       241 l~~~---~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~  312 (394)
                      |.|+   ...+++.|.||+|++-|++...  .+..+......+.++.|.  ...++.+..=|.+.+||+++++. ...+.
T Consensus       240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~  319 (498)
T KOG4328|consen  240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR  319 (498)
T ss_pred             eEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence            8887   4679999999999999998754  344444344456666776  45666666666999999998765 55555


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-----eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-----RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGV  386 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~v  386 (394)
                      .|...+..+.+    +|....+|++++.|++++|||++....     +..+.+...|.++.|+|.+ .|+|.+.|..|+|
T Consensus       320 lh~kKI~sv~~----NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  320 LHKKKITSVAL----NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhcccceeec----CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence            56665555554    888888999999999999999986532     4455668889999999998 9999999999999


Q ss_pred             EeCC
Q 016134          387 WKLL  390 (394)
Q Consensus       387 Wd~~  390 (394)
                      ||..
T Consensus       396 ~dss  399 (498)
T KOG4328|consen  396 FDSS  399 (498)
T ss_pred             eecc
Confidence            9973

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-16  Score=146.73  Aligned_cols=260  Identities=15%  Similarity=0.206  Sum_probs=179.8

Q ss_pred             CCCCcccccccc-cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC
Q 016134           73 KSPPSYNRLKNN-LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE  151 (394)
Q Consensus        73 ~~~~~~~~~~~~-~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~  151 (394)
                      -...-|+.  .+ .-.++-++|+.+++|.-+.+..+-+.        ..-..|+  .-.+|+ ...-..|+.    +|+.
T Consensus        37 ~~s~~w~~--~n~lvvas~~gdk~~~~~~K~g~~~~Vp~--------~~k~~gd--~~~Cv~-~~s~S~y~~----sgG~   99 (673)
T KOG4378|consen   37 DFSFNWQR--RNFLVVASMAGDKVMRIKEKDGKTPEVPR--------VRKLTGD--NAFCVA-CASQSLYEI----SGGQ   99 (673)
T ss_pred             ceeeeccc--cceEEEeecCCceeEEEecccCCCCccce--------eeccccc--hHHHHh-hhhcceeee----ccCc
Confidence            45556665  33 34466778999999987765211000        0012222  222232 111123443    4555


Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAG  229 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~  229 (394)
                      .++|+|||+... .+.+.+++|+..|+++.++....+||+++..|.  |-.+.++.......+                 
T Consensus       100 ~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-----------------  161 (673)
T KOG4378|consen  100 SGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-----------------  161 (673)
T ss_pred             CceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-----------------
Confidence            669999999854 678889999999999999999999999999888  466666655422221                 


Q ss_pred             ecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEe
Q 016134          230 AQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       230 ~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~  302 (394)
                         +....|.-+.|+   ..+|.+++.+|.|.+||+....++..+ +.|..+...++|+   ..+|++.+.|..|.+||+
T Consensus       162 ---~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  162 ---DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             ---CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence               112233445565   356889999999999999887776655 5799999999998   578999999999999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCCEEE
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDKLFF  376 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~  376 (394)
                      +.......+. ...+...++    |.++|. +|+.|...|.|..||++..+......+  ...|++++|-|.-.++
T Consensus       239 ~s~~s~~~l~-y~~Plstva----f~~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl  308 (673)
T KOG4378|consen  239 RSQASTDRLT-YSHPLSTVA----FSECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL  308 (673)
T ss_pred             ccccccceee-ecCCcceee----ecCCce-EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence            8765544443 233333333    589998 999999999999999998755444433  5669999998875333

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.74  E-value=7.6e-17  Score=152.71  Aligned_cols=223  Identities=22%  Similarity=0.321  Sum_probs=152.9

Q ss_pred             ecCCCCCeEEEEEcCCC-----ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEE
Q 016134          147 VRGDECRFLHSWFCGEG-----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSM  219 (394)
Q Consensus       147 ~~g~~~~~i~iWd~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l  219 (394)
                      +.++++|.|.++|...-     ...+.....|...|.++.|.|...+|++++.|.+  +||+++.++....         
T Consensus        68 avadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~---------  138 (720)
T KOG0321|consen   68 AVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR---------  138 (720)
T ss_pred             EEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce---------
Confidence            34466779999998532     1224566789999999999997789999999999  5999988776321         


Q ss_pred             EEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc--------------------e-------eE
Q 016134          220 VVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE--------------------P-------VM  269 (394)
Q Consensus       220 ~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~--------------------~-------~~  269 (394)
                                ..-+|...|.+++|.   ...|++|+.||.|.|||++-..                    +       +.
T Consensus       139 ----------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  139 ----------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             ----------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence                      011788888888886   6789999999999999997321                    1       11


Q ss_pred             EEcCCCCC----cEEEEEc-CCEEEEEeC-CCcEEEEEeCCCceeeEe--------eccc-CCcceEEEEeeECCCCCcE
Q 016134          270 TLNDHTDA----PMSLLCW-DQFLLSCSL-DHTIKVWFATGRGNLEAA--------YTHK-EDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       270 ~~~~h~~~----v~~l~~~-~~~l~s~s~-Dg~i~vwd~~~~~~~~~~--------~~~~-~~~~~~~~~~~~s~~g~~~  334 (394)
                      ..+++...    |+.+.|- +..||+++. |+.|+|||++........        ..+. .......+  ..+..|. +
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL--~lDssGt-~  285 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL--ILDSSGT-Y  285 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE--EecCCCC-e
Confidence            12233333    4445555 778999988 999999999975433221        1111 11223333  3466778 4


Q ss_pred             EEEEeCCCeEEEEECCCCce--eEEEec----CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          335 LICACNDNTVHLYELPSFME--RGRIFS----KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~--~~~~~~----~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |.+.+.|+.|++|++.+...  +..+.+    ...|.+ ..+||+ +|++|+.|....+|.+...
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCCCceEeccCCCcceeeeeecCc
Confidence            55556699999999987533  222322    111222 467898 9999999999999998764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=2.5e-16  Score=141.60  Aligned_cols=225  Identities=20%  Similarity=0.265  Sum_probs=167.3

Q ss_pred             ccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC------ceEEEEecccCCCeEEEEecCC-CCEEEEE
Q 016134          120 SDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG------LTMLAKLEGHEKAVSGIALPLR-SDKLFSG  192 (394)
Q Consensus       120 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~------~~~~~~l~~h~~~V~~l~~s~~-~~~l~sg  192 (394)
                      ....||+..|-.+. |+|-...+.   .+|+.|-+|.||++..+      .+++..|.||+..|--++|+|. .+.|+|+
T Consensus        75 P~v~GHt~~vLDi~-w~PfnD~vI---ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   75 PLVCGHTAPVLDID-WCPFNDCVI---ASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             CCccCccccccccc-cCccCCcee---ecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence            36789999999999 999666543   35566669999998643      4678999999999999999995 5789999


Q ss_pred             eCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCcee
Q 016134          193 SRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPV  268 (394)
Q Consensus       193 s~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~  268 (394)
                      +.|.+  ||++.+++.+...                      .|...|.++.|+  |.+|++.+.|+.|||||.++++.+
T Consensus       151 g~Dn~v~iWnv~tgeali~l----------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v  208 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITL----------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV  208 (472)
T ss_pred             cCCceEEEEeccCCceeeec----------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence            99998  6999999876322                      366777777776  899999999999999999999999


Q ss_pred             EEEcCCCCCc-EEEEEc--CCEEEEEe----CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134          269 MTLNDHTDAP-MSLLCW--DQFLLSCS----LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND  341 (394)
Q Consensus       269 ~~~~~h~~~v-~~l~~~--~~~l~s~s----~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d  341 (394)
                      ..-.+|.+.- ..+.|.  +. +++.+    .++++-+||..+-+....+........++  -..|+++.+-+.++|-.|
T Consensus       209 ~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl--~PFyD~dt~ivYl~GKGD  285 (472)
T KOG0303|consen  209 SEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL--LPFYDPDTSIVYLCGKGD  285 (472)
T ss_pred             eecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceE--EeeecCCCCEEEEEecCC
Confidence            9887887643 333344  55 55544    37899999977654444444444333333  234799988677888889


Q ss_pred             CeEEEEECCCCceeEEEe----cCCcEEEEEECCCC
Q 016134          342 NTVHLYELPSFMERGRIF----SKHEVRVIEIGPDK  373 (394)
Q Consensus       342 g~I~iwd~~~~~~~~~~~----~~~~v~~l~~sp~~  373 (394)
                      +.|+.|.+....+...+.    ...+-..+.|.|..
T Consensus       286 ~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  286 SSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             cceEEEEecCCCceeEEecccccCCccccccccccc
Confidence            999999998766443332    24556667777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.74  E-value=6.9e-15  Score=135.94  Aligned_cols=215  Identities=12%  Similarity=0.054  Sum_probs=146.6

Q ss_pred             cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEE-EEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          148 RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL-FSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       148 ~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      ++..++.|++||..++ +.+..+..|.. +.+++|+|+++.+ ++++.++.  +||..+++......             
T Consensus         6 s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------   70 (300)
T TIGR03866         6 SNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------------   70 (300)
T ss_pred             EecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-------------
Confidence            3445669999999877 66777776644 6789999999877 56667777  59998876653211             


Q ss_pred             EEEEEecCCCCCCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC-cEE
Q 016134          225 MLFAGAQDGHTRPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH-TIK  298 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg-~i~  298 (394)
                              .+ ..+..++|+  ++.+ ++++.|+.|++||+++.+.+..+.. ...+.++.++  ++++++++.++ .+.
T Consensus        71 --------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        71 --------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAH  140 (300)
T ss_pred             --------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEE
Confidence                    11 112344554  4555 4456689999999999888877763 3346778887  77888887765 567


Q ss_pred             EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--------CCcEEEEEEC
Q 016134          299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--------KHEVRVIEIG  370 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s  370 (394)
                      +||.++.+......... ...    ...|+|+++.+++++..++.|++||+++++.+..+..        ......++|+
T Consensus       141 ~~d~~~~~~~~~~~~~~-~~~----~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s  215 (300)
T TIGR03866       141 FIDTKTYEIVDNVLVDQ-RPR----FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT  215 (300)
T ss_pred             EEeCCCCeEEEEEEcCC-Ccc----EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence            78988766554433221 112    2346999984445666799999999999877665532        1124568899


Q ss_pred             CCC-E-EEEEeCCCeEEEEeCCCC
Q 016134          371 PDK-L-FFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       371 p~~-~-l~tgs~Dg~I~vWd~~~~  392 (394)
                      |++ + +++...++.|.+||+.+.
T Consensus       216 ~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       216 KDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCC
Confidence            999 4 444556778999998753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.73  E-value=1.6e-16  Score=154.68  Aligned_cols=220  Identities=18%  Similarity=0.193  Sum_probs=171.1

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEe-
Q 016134           92 EDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKL-  170 (394)
Q Consensus        92 ~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l-  170 (394)
                      +++.++.||..+.....+.      ..+....-....++++. .++||++...+...|    +|-++++..+ .....+ 
T Consensus       420 ~~~~~~tW~~~n~~~G~~~------L~~~~~~~~~~~~~av~-vs~CGNF~~IG~S~G----~Id~fNmQSG-i~r~sf~  487 (910)
T KOG1539|consen  420 GKRSAYTWNFRNKTSGRHV------LDPKRFKKDDINATAVC-VSFCGNFVFIGYSKG----TIDRFNMQSG-IHRKSFG  487 (910)
T ss_pred             CcceEEEEeccCcccccEE------ecCccccccCcceEEEE-EeccCceEEEeccCC----eEEEEEcccC-eeecccc
Confidence            3567777887755432211      11111222447888888 999999998888777    9999999988 455556 


Q ss_pred             --cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          171 --EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       171 --~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                        ..|.++|++++...-++.++|++.+|.  .||......+....                      -...+.++.++  
T Consensus       488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~----------------------l~~~~~~iv~hr~  545 (910)
T KOG1539|consen  488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR----------------------LGSSITGIVYHRV  545 (910)
T ss_pred             cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec----------------------cCCCcceeeeeeh
Confidence              589999999999999999999999999  59998877542111                      12344555554  


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA  322 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  322 (394)
                      ..+++.+..|-.|+++|..+.+.++.|.+|.+.|++++|+  |+.|++++.|++|++||+.++..+..+...     ..+
T Consensus       546 s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----~~~  620 (910)
T KOG1539|consen  546 SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----SPC  620 (910)
T ss_pred             hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----Ccc
Confidence            5778999999999999999999999999999999999999  899999999999999999999887776533     233


Q ss_pred             EEeeECCCCCcEEEEEeCC-CeEEEEECCC
Q 016134          323 LGGLNDPDGKPVLICACND-NTVHLYELPS  351 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~  351 (394)
                      ....|+|+|. +||+...| .-|++|.-.+
T Consensus       621 ~sls~SPngD-~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  621 TSLSFSPNGD-FLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eeeEECCCCC-EEEEEEecCceEEEEEchh
Confidence            4455799999 99999888 7899996543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-15  Score=133.32  Aligned_cols=191  Identities=14%  Similarity=0.196  Sum_probs=150.1

Q ss_pred             eEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe
Q 016134          177 VSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       177 V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs  252 (394)
                      -.|+.|++.|.+||.|..||.  |||+.+...-+                     ...+|..+|++++|+  +.+|+++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---------------------~lsaH~~pi~sl~WS~dgr~LltsS   84 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---------------------MLSAHVRPITSLCWSRDGRKLLTSS   84 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---------------------hhhccccceeEEEecCCCCEeeeec
Confidence            789999999999999999999  69998866332                     222789999999998  88999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134          253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      .|..|.+||+..+.+++.+. ..++|+.+.|+   .+..+++-.+..-.+-++..++....-..........+-+..|++
T Consensus        85 ~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   85 RDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             CCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence            99999999999999999987 67899999998   344444445555666666553222111111222223333345789


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          330 DGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .|+ ++++|...|.+.+||..+.+++..+..  ...|..+.++..| .|+.-+.|..||.|+++
T Consensus       164 ~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  164 RGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             CCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            999 999999999999999999988887765  3679999999999 99999999999999986

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.7e-15  Score=141.63  Aligned_cols=196  Identities=19%  Similarity=0.254  Sum_probs=157.3

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEE
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCS  250 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~s  250 (394)
                      ..+|.+|||+.+.+.||.+-.||.  ||++..+-.....                +.|   +....|.+|+|. +..|++
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g---~~drsIE~L~W~e~~RLFS   85 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHG---PEDRSIESLAWAEGGRLFS   85 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------Eec---CCCCceeeEEEccCCeEEe
Confidence            578999999999999999999999  6999886544221                111   345678899998 789999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC
Q 016134          251 GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       251 gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (394)
                      .+.+|+|.-||+.+++++..+....+.|++++.+  +..++.+++||.+..++...++......-......+  +++.|+
T Consensus        86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv--Lslsw~  163 (691)
T KOG2048|consen   86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV--LSLSWN  163 (691)
T ss_pred             ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE--EEEEec
Confidence            9999999999999999999999999999999998  778999999998888877665544433333333344  455689


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEec------C-C--cEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS------K-H--EVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~-~--~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      |++. -|++|+.||.|++||+.++..+.....      + .  -|+++.+-.++.|++|...|.|.+||-..
T Consensus       164 ~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  164 PTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIF  234 (691)
T ss_pred             CCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccC
Confidence            9998 799999999999999999987763222      1 1  28899999888999999999999999754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=1.8e-15  Score=131.06  Aligned_cols=246  Identities=14%  Similarity=0.186  Sum_probs=171.5

Q ss_pred             CCCCccceeeeccccccccccCCCeecC-CCC---CeEEEEEcCCCc--------eEEEEec-ccCCCeEEEEecCCCCE
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRG-DEC---RFLHSWFCGEGL--------TMLAKLE-GHEKAVSGIALPLRSDK  188 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g-~~~---~~i~iWd~~~~~--------~~~~~l~-~h~~~V~~l~~s~~~~~  188 (394)
                      ..-+...|..++ -+|...-+.+.|+.- +..   -.+-||.+....        +++..|. .+-+.|.|+.|.|++..
T Consensus        59 f~h~agEvw~la-s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   59 FFHHAGEVWDLA-SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhcCCcceehhh-cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            445556777777 777666666666552 222   357899986542        2333443 45679999999999999


Q ss_pred             EEEEeCCCc-eeecCCCcEE--EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEe
Q 016134          189 LFSGSRDGT-AWNIESSAEF--SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWE  261 (394)
Q Consensus       189 l~sgs~Dg~-vWd~~~~~~~--~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd  261 (394)
                      |++-..... +|+++....+  .+...                 ...+|....++-+|+    ++.+++. .|+++..||
T Consensus       138 lasm~dn~i~l~~l~ess~~vaev~ss-----------------~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D  199 (370)
T KOG1007|consen  138 LASMDDNNIVLWSLDESSKIVAEVLSS-----------------ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD  199 (370)
T ss_pred             eEEeccCceEEEEcccCcchheeeccc-----------------ccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence            999886555 6999887663  11110                 111345555666675    4556654 589999999


Q ss_pred             CCCCceeEEEc-CCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcEEE
Q 016134          262 LDTLEPVMTLN-DHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPVLI  336 (394)
Q Consensus       262 ~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~  336 (394)
                      +++.++...++ +|...|..+.|+   ..+|++|+.|+.|++||.|+.+ ++..+..|.    -..+++.|+|....+|+
T Consensus       200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs----HWvW~VRfn~~hdqLiL  275 (370)
T KOG1007|consen  200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS----HWVWAVRFNPEHDQLIL  275 (370)
T ss_pred             ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc----eEEEEEEecCccceEEE
Confidence            99988777764 588889999999   3479999999999999999754 344444443    23445567888777999


Q ss_pred             EEeCCCeEEEEECCCCc---------------------e--------eEEE-ecCCcEEEEEECCCC--EEEEEeCCCeE
Q 016134          337 CACNDNTVHLYELPSFM---------------------E--------RGRI-FSKHEVRVIEIGPDK--LFFTGDGAGML  384 (394)
Q Consensus       337 sgs~dg~I~iwd~~~~~---------------------~--------~~~~-~~~~~v~~l~~sp~~--~l~tgs~Dg~I  384 (394)
                      +|+.|..|.+|...+-.                     .        +.++ .+++.|.+++|+.-.  .||+-+.||++
T Consensus       276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence            99999999999754311                     0        0111 125679999999877  99999999999


Q ss_pred             EEEeCC
Q 016134          385 GVWKLL  390 (394)
Q Consensus       385 ~vWd~~  390 (394)
                      .|=.+.
T Consensus       356 iIs~V~  361 (370)
T KOG1007|consen  356 IISSVP  361 (370)
T ss_pred             EeecCC
Confidence            875543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.2e-16  Score=144.47  Aligned_cols=241  Identities=17%  Similarity=0.209  Sum_probs=184.6

Q ss_pred             CCCCcccc-ccccc-ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCc-cceeeeccccccccccCCCeecC
Q 016134           73 KSPPSYNR-LKNNL-WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDK-STSKKTTLKNVCCHWLLGNCVRG  149 (394)
Q Consensus        73 ~~~~~~~~-~~~~~-~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~-~~v~~~~~~~~~~~~~~~~~~~g  149 (394)
                      .-|..... +.++. .|+++|-.+....||+++.+.+..+          -..|++ +.++.+. .++|+.+|+.....|
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~----------~~~g~e~~~~e~Fe-VShd~~fia~~G~~G  325 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK----------PPYGVEEKSMERFE-VSHDSNFIAIAGNNG  325 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeecccccccccc----------CCCCcccchhheeE-ecCCCCeEEEcccCc
Confidence            34444444 33444 5666666899999999999987655          345555 6788888 899999999888887


Q ss_pred             CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                          .|++.-..++ +.+..++ -.+.|.+++|+.+++.|+.++.+|.  +||++...++.....++.|..         
T Consensus       326 ----~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g---------  390 (514)
T KOG2055|consen  326 ----HIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG---------  390 (514)
T ss_pred             ----eEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce---------
Confidence                9999998877 7777765 4789999999999999999999999  589988877755444433322         


Q ss_pred             EEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC------CceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcE
Q 016134          228 AGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT------LEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTI  297 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~------~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i  297 (394)
                               .-.|++.++.+||+||..|.|.|||.++      .+++.++..-...|+++.|+  .++|+.||.  +..+
T Consensus       391 ---------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal  461 (514)
T KOG2055|consen  391 ---------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL  461 (514)
T ss_pred             ---------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence                     2234445688999999999999999754      56778887788899999999  678887775  7789


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      |+-.+........+.....+.. ...++.|+|.+. +|+.|..+|.+.+|.+.
T Consensus       462 rLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG-~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  462 RLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSG-YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEeccceeeeccCCCCCCccc-ceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence            9999988777666665544433 223556899998 99999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.69  E-value=3.1e-15  Score=135.14  Aligned_cols=166  Identities=20%  Similarity=0.263  Sum_probs=122.0

Q ss_pred             cceeeecccccccc-ccCCCeecCCCCCeEEEEEcCCC--------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134          127 STSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGEG--------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       127 ~~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~~--------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      ..+.++. ++.... .+|++.    .|..|+||.++.+        .+.+..|..|..+|+++.|+|+|++|+||+.+|.
T Consensus        14 ~pv~s~d-fq~n~~~~laT~G----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~   88 (434)
T KOG1009|consen   14 EPVYSVD-FQKNSLNKLATAG----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE   88 (434)
T ss_pred             CceEEEE-eccCcccceeccc----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence            3566666 444333 566554    4458999987522        3456778889999999999999999999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcC-CEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVAN-EMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN  272 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  272 (394)
                        +|....-...    ....  .....+ ..++--...+|...|..++|.  +.++++++.|.++++||+..++.+..+.
T Consensus        89 v~lWk~~~~~~~----~~d~--e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   89 VFLWKQGDVRIF----DADT--EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             EEEEEecCcCCc----cccc--hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence              5876531111    0000  111111 133434445799999999997  6789999999999999999999999999


Q ss_pred             CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeC
Q 016134          273 DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       273 ~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~  303 (394)
                      .|...+.-++|+  ++++++-+.|...+.+.+.
T Consensus       163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ccccccceeecchhhhhhhhhccCcccceeeee
Confidence            999999999998  7888888888866666554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=3.5e-14  Score=127.10  Aligned_cols=213  Identities=15%  Similarity=0.214  Sum_probs=160.6

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC-------------------
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD-------------------  232 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~-------------------  232 (394)
                      ...+..+.|+.+...|..|+.||. ++..+.-... ........|.-+-|+...++..+.+                   
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence            456777779999999999999998 6665543321 2222333455555665544333333                   


Q ss_pred             CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC---CCCCcEEEEEc--CCEEEEEe--CCCcEEEEEeCCC
Q 016134          233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND---HTDAPMSLLCW--DQFLLSCS--LDHTIKVWFATGR  305 (394)
Q Consensus       233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---h~~~v~~l~~~--~~~l~s~s--~Dg~i~vwd~~~~  305 (394)
                      ....+|.++.++.++|+++-.+. |.|||+++.++++++..   +...+.++.++  +.+|+--+  ..|.|.|||+.+-
T Consensus        85 ~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   85 FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            23567888888888888887665 99999999999988864   34456666666  44666533  3689999999999


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeC
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT-VHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      +....+..|+....+++    |+++|. +||++++.|+ ||||.+++++.+.++..   ...|.+++|+|++ +|++.+.
T Consensus       164 ~~v~~I~aH~~~lAala----fs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALA----FSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             eeeeEEEecCCceeEEE----ECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            99999988887665555    599999 9999999987 69999999999998876   4469999999999 9999999


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      .++|+||.++..
T Consensus       239 TeTVHiFKL~~~  250 (391)
T KOG2110|consen  239 TETVHIFKLEKV  250 (391)
T ss_pred             CCeEEEEEeccc
Confidence            999999998754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4.6e-16  Score=156.39  Aligned_cols=248  Identities=18%  Similarity=0.216  Sum_probs=179.4

Q ss_pred             cCCCCCcccc--cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccc-ccCCCee
Q 016134           71 AKKSPPSYNR--LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH-WLLGNCV  147 (394)
Q Consensus        71 ~~~~~~~~~~--~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~-~~~~~~~  147 (394)
                      .+..-++|..  .++.+-|+.|-.|..|-+||...-.-..      +........-|...|+.+. |++... ++|++..
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~------~~~~la~~~~h~G~V~gLD-fN~~q~nlLASGa~  137 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA------SEEVLATKSKHTGPVLGLD-FNPFQGNLLASGAD  137 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCc------chHHHhhhcccCCceeeee-ccccCCceeeccCC
Confidence            4788899988  3344568888889999999988521110      0011124457778999999 888665 8886666


Q ss_pred             cCCCCCeEEEEEcCCCceEEEE-ecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEc
Q 016134          148 RGDECRFLHSWFCGEGLTMLAK-LEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVA  222 (394)
Q Consensus       148 ~g~~~~~i~iWd~~~~~~~~~~-l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~  222 (394)
                      +|    .|.|||+++...+..- -..-.+.|.+|+|+. ..+.|++++.+|.  |||++..+.+ .+..+.+        
T Consensus       138 ~g----eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~--------  205 (1049)
T KOG0307|consen  138 DG----EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG--------  205 (1049)
T ss_pred             CC----cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--------
Confidence            65    8999999765333222 223568899999987 4577889999877  7999988654 3322211        


Q ss_pred             CCEEEEEecCCCCCCEEEEEecC---CeEEEEeCCC---eEEEEeCCC-CceeEEEcCCCCCcEEEEEc---CCEEEEEe
Q 016134          223 NEMLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDN---TIRVWELDT-LEPVMTLNDHTDAPMSLLCW---DQFLLSCS  292 (394)
Q Consensus       223 ~~~l~~~~~~~h~~~V~~l~~~~---~~l~sgs~Dg---~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l~s~s  292 (394)
                                  ...+..|+|++   ..|++++.|.   .|.+||+|. ..+++++++|...|.++.|.   ..+|++++
T Consensus       206 ------------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg  273 (1049)
T KOG0307|consen  206 ------------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG  273 (1049)
T ss_pred             ------------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc
Confidence                        13355666762   3466666543   799999985 45788889999999999998   47999999


Q ss_pred             CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      .|++|.+|+.++++.+..+...    ...++.+.|.|....++++++.||.|.||.+....
T Consensus       274 kD~~ii~wN~~tgEvl~~~p~~----~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  274 KDNRIICWNPNTGEVLGELPAQ----GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCeeEecCCCceEeeecCCC----CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999999998888777652    23445556788777689999999999999987654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.65  E-value=6.1e-16  Score=150.48  Aligned_cols=259  Identities=18%  Similarity=0.253  Sum_probs=193.1

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ..-+|++||+|+.+|||..++..+..            ..+||...++..+ ++.....+|+++.|-    .|++|.+.+
T Consensus       201 tg~~Iitgsdd~lvKiwS~et~~~lA------------s~rGhs~ditdla-vs~~n~~iaaaS~D~----vIrvWrl~~  263 (1113)
T KOG0644|consen  201 TGRYIITGSDDRLVKIWSMETARCLA------------SCRGHSGDITDLA-VSSNNTMIAAASNDK----VIRVWRLPD  263 (1113)
T ss_pred             ccceEeecCccceeeeeeccchhhhc------------cCCCCccccchhc-cchhhhhhhhcccCc----eEEEEecCC
Confidence            44489999999999999999888754            6789999999999 888888888877766    999999999


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      + .++..+.+|+++|++|+|+|-.    +.+.||+  +||.+-........+..      |           ....-+.+
T Consensus       264 ~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~------~-----------~~~~~~~s  321 (1113)
T KOG0644|consen  264 G-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK------F-----------TEKDLVDS  321 (1113)
T ss_pred             C-chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC------c-----------ccccceee
Confidence            8 8899999999999999999954    7788998  79987222111111110      0           11133444


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      +.|.  +..+++++.|+....|.+....      .+...+.-+...   ..+.+++-.+-.+++|++.++.....+..|.
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence            4554  5679999999999999765321      111111111111   3556677778899999999998888888888


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ....++.+    +|-+..+..+++.||.+.|||+-.+.++..+.. ...+..-+|++|| .++....-|.+.|...-
T Consensus       396 d~~yvLd~----Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  396 DEVYVLDV----HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             cceeeeee----cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence            77666655    777776778899999999999999887776655 4557788999999 77777777888887643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.2e-15  Score=131.58  Aligned_cols=244  Identities=19%  Similarity=0.261  Sum_probs=167.5

Q ss_pred             cccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc--eeecCCCcEE---EecCC
Q 016134          140 HWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT--AWNIESSAEF---SLDGP  212 (394)
Q Consensus       140 ~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~--vWd~~~~~~~---~~~~~  212 (394)
                      ..+|.++..|    .|+++|..++ +.+..+++|...++.++|..  ....+.+|+.||+  +||+++....   ....+
T Consensus        41 ~~vav~lSng----sv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~  115 (376)
T KOG1188|consen   41 TAVAVSLSNG----SVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ  115 (376)
T ss_pred             eeEEEEecCC----eEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence            3356666666    9999999986 88999999999999999976  5688999999999  5999987654   22223


Q ss_pred             C-CcEEEEEEc-CC-EEEEEecC------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeC
Q 016134          213 V-GEVYSMVVA-NE-MLFAGAQD------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWEL  262 (394)
Q Consensus       213 ~-~~v~~l~~~-~~-~l~~~~~~------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~  262 (394)
                      . .+..+++.. .. .+++|+..                        .|...|++|.|+   +++|++||.||.|.|||+
T Consensus       116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            2 355566553 22 45544432                        799999999997   689999999999999999


Q ss_pred             CCCc---eeEEEcCCCCCcEEEEEcC---CEEEEEeCCCcEEEEEeCCCceeeEeecccC--------CcceEEEEeeEC
Q 016134          263 DTLE---PVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKE--------DNGVLALGGLND  328 (394)
Q Consensus       263 ~~~~---~~~~~~~h~~~v~~l~~~~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~s  328 (394)
                      +.-.   .+...-.|...|..+.|.+   +.|.+-+...+..+|+++.+.+...+.....        ......+. ..+
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~  274 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHS  274 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-ccc
Confidence            7532   1222234777899999983   3688888999999999988764433322210        01111111 234


Q ss_pred             CCCCcEEEEEeC-CCeEEEEECC---CCc---eeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          329 PDGKPVLICACN-DNTVHLYELP---SFM---ERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       329 ~~g~~~l~sgs~-dg~I~iwd~~---~~~---~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      |....+++.++. -+...++-+.   ++.   .+..+..  ..-|+++.|...+ +++||++||.+.+|..
T Consensus       275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            444335544444 5666666443   232   2222222  2348888888777 9999999999999985

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.64  E-value=1.2e-15  Score=134.42  Aligned_cols=246  Identities=17%  Similarity=0.194  Sum_probs=173.1

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG  163 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~  163 (394)
                      +..++.|+--..|||-|+.++.+.+            ..+||..+|..+. +.|....+.   .++++|..||+|++.+.
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~------------~~~ghG~sINeik-~~p~~~qlv---ls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSK------------NYRGHGGSINEIK-FHPDRPQLV---LSASKDHSVRLWNIQTD  168 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhcc------------ceeccCccchhhh-cCCCCCcEE---EEecCCceEEEEeccCC
Confidence            3345666678899999999888765            5788888999998 888664332   34566779999999887


Q ss_pred             ceEEEEe---cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE---ec------CCCCcEEEEEEcCCEEEEE
Q 016134          164 LTMLAKL---EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS---LD------GPVGEVYSMVVANEMLFAG  229 (394)
Q Consensus       164 ~~~~~~l---~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~---~~------~~~~~v~~l~~~~~~l~~~  229 (394)
                       .++..+   .||.+.|.++.|++++.+|+|++.|..  +|++...+...   ..      ....++..... +-..+ .
T Consensus       169 -~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~-~fp~f-s  245 (385)
T KOG1034|consen  169 -VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT-HFPDF-S  245 (385)
T ss_pred             -eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc-ccccc-c
Confidence             677766   579999999999999999999999999  69998554321   00      00000000000 00011 1


Q ss_pred             ecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC-Cc-------------eeEEEcCCCCCcEEEEEc----CCEEEEE
Q 016134          230 AQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT-LE-------------PVMTLNDHTDAPMSLLCW----DQFLLSC  291 (394)
Q Consensus       230 ~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~-~~-------------~~~~~~~h~~~v~~l~~~----~~~l~s~  291 (394)
                      +.+-|...|-|+.|-++++++=|-++.|..|..-. .+             .+.++.-....|+-+.|.    .+.||.+
T Consensus       246 t~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             ccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            55689999999999999999999999999998721 11             123344444556666665    6889999


Q ss_pred             eCCCcEEEEEeCCCceee-EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          292 SLDHTIKVWFATGRGNLE-AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      .+.|.|.+||++..++.. ....+.. ........+|+.|+. +|+..++|++|--||..
T Consensus       326 nq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence            999999999999766532 2222222 222223445799999 88888999999999854

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4.5e-14  Score=138.77  Aligned_cols=285  Identities=12%  Similarity=0.129  Sum_probs=193.3

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC---CCceEEEE
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---EGLTMLAK  169 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---~~~~~~~~  169 (394)
                      +..+++|+.+...  .+.-      ......-|...+++++ ++||+.++|++-.+|    .|.+|.--   ....-.+.
T Consensus       180 ~~~~~~~~v~~~~--~~~~------~~~~~~~Htf~~t~~~-~spn~~~~Aa~d~dG----rI~vw~d~~~~~~~~t~t~  246 (792)
T KOG1963|consen  180 MCKIHIYFVPKHT--KHTS------SRDITVHHTFNITCVA-LSPNERYLAAGDSDG----RILVWRDFGSSDDSETCTL  246 (792)
T ss_pred             eeeEEEEEecccc--eeec------cchhhhhhcccceeEE-eccccceEEEeccCC----cEEEEeccccccccccceE
Confidence            5667788887643  1110      0012234455678888 999999999888776    89999642   22345677


Q ss_pred             ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC-------------
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD-------------  232 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-------------  232 (394)
                      ++-|...|++++|+++|.+|+||+.++.  +|.+++++..-+.....+|..+.++|+  ...+...|             
T Consensus       247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             EEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence            8889999999999999999999999998  599999997777888889999999988  33333333             


Q ss_pred             ----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC-----CC------CCcEEEEE
Q 016134          233 ----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND-----HT------DAPMSLLC  283 (394)
Q Consensus       233 ----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----h~------~~v~~l~~  283 (394)
                                      ...+-.+.++++  .+.++-.+..+.|.+||+-+.+.+..+..     +.      ..++++..
T Consensus       327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~  406 (792)
T KOG1963|consen  327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR  406 (792)
T ss_pred             hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence                            012233445555  35677788899999999988776655531     22      23455544


Q ss_pred             c--CCEEEEEeC--------C--CcEEEEEeCCCceeeEee---cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          284 W--DQFLLSCSL--------D--HTIKVWFATGRGNLEAAY---THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       284 ~--~~~l~s~s~--------D--g~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                      +  +.+++|.-.        |  -.+|+|-......-..+.   ..++.....+.+.. ++.....+++++.||.++||-
T Consensus       407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~-~~~rs~~~vta~~dg~~KiW~  485 (792)
T KOG1963|consen  407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL-NPTRSVRCVTASVDGDFKIWV  485 (792)
T ss_pred             hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe-cCcccceeEEeccCCeEEEEE
Confidence            4  777777632        2  357889765443222222   22222333333322 333333789999999999999


Q ss_pred             CCCCceeE-----------EEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          349 LPSFMERG-----------RIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       349 ~~~~~~~~-----------~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      +.+.+.+.           ...+..++++++|+.||.+++.+.|+.|.+||..+
T Consensus       486 ~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  486 FTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             EecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence            84432211           11246789999999999888888999999999877

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.64  E-value=9.6e-15  Score=126.65  Aligned_cols=224  Identities=16%  Similarity=0.160  Sum_probs=151.4

Q ss_pred             CCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc---------eeecCCCcEEEecCCCCcEE
Q 016134          150 DECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT---------AWNIESSAEFSLDGPVGEVY  217 (394)
Q Consensus       150 ~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~---------vWd~~~~~~~~~~~~~~~v~  217 (394)
                      ..+..|++.++..+  .-....|..|.+.|..|+-+|- .+.|+|+-.+-.         ||.+...........     
T Consensus        37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t-----  111 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST-----  111 (370)
T ss_pred             CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-----
Confidence            34457777766433  3345667788999999999994 556666655433         788865433210000     


Q ss_pred             EEEEcCCEEEEEecC-CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce-eEEEcC-----CCCCcEEEEEc----
Q 016134          218 SMVVANEMLFAGAQD-GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP-VMTLND-----HTDAPMSLLCW----  284 (394)
Q Consensus       218 ~l~~~~~~l~~~~~~-~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~-----h~~~v~~l~~~----  284 (394)
                             .-.++..+ .+-+.|.|+.|.  +..+++-. |..|.+|++..... +..+..     +....++-.|+    
T Consensus       112 -------lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd  183 (370)
T KOG1007|consen  112 -------LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD  183 (370)
T ss_pred             -------hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence                   00111222 445688899997  34566554 88999999987665 443321     33445555565    


Q ss_pred             CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-eEEEec-CC
Q 016134          285 DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-RGRIFS-KH  362 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~~  362 (394)
                      +..+++. .|+++..||+|+..+...+...   +........|+|+.+.+|+++++||.|+|||.+.-+. +..+.. .+
T Consensus       184 gnqv~tt-~d~tl~~~D~RT~~~~~sI~dA---Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  184 GNQVATT-SDSTLQFWDLRTMKKNNSIEDA---HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             cceEEEe-CCCcEEEEEccchhhhcchhhh---hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence            4556554 5799999999987666555432   2223334457999999999999999999999997654 444433 78


Q ss_pred             cEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134          363 EVRVIEIGPDK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       363 ~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      .|+++.|+|..  +|++|+.|..|.+|...
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEecc
Confidence            89999999976  99999999999999754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=1.6e-12  Score=124.20  Aligned_cols=280  Identities=24%  Similarity=0.361  Sum_probs=204.6

Q ss_pred             cccCCC-CCcccccccCC-CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           87 VSSGSE-DRIPHVRNREN-PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        87 ~~s~s~-d~~~~~w~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      ++..+. |+.+++|+.+. ....            ....+|...+..+. +.+.+.+++....   .++.+++|+.... 
T Consensus       126 ~~~~~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~-  188 (466)
T COG2319         126 LLASSSLDGTVKLWDLSTPGKLI------------RTLEGHSESVTSLA-FSPDGKLLASGSS---LDGTIKLWDLRTG-  188 (466)
T ss_pred             EeccCCCCccEEEEEecCCCeEE------------EEEecCcccEEEEE-ECCCCCEEEecCC---CCCceEEEEcCCC-
Confidence            344344 99999999997 2211            14567777888888 9998886655433   4669999999875 


Q ss_pred             eEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc--eeecCCCcEEE--ecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT--AWNIESSAEFS--LDGPVGEVYSMVVANE--MLFAGAQD-----  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~--vWd~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~~~~~-----  232 (394)
                      ..+..+.+|...|.+++|+|++. .+++++.|+.  +||...+....  +..+.... ...|+++  .+++++.+     
T Consensus       189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~  267 (466)
T COG2319         189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRL  267 (466)
T ss_pred             ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEE
Confidence            77888889999999999999998 5556588888  59988776664  55666554 3356665  44434333     


Q ss_pred             --------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc-C-CEEEEE-
Q 016134          233 --------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW-D-QFLLSC-  291 (394)
Q Consensus       233 --------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~-~~l~s~-  291 (394)
                                    +|...|.++.|.  +..+++++.|+.+++||+.+........  .|...+..+.+. . ..++.+ 
T Consensus       268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
T COG2319         268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG  347 (466)
T ss_pred             eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence                          467889999887  4677779999999999998887766665  787778888884 1 455555 


Q ss_pred             eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-EeCCCeEEEEECCCCceeEEEecC-CcEEEEEE
Q 016134          292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-ACNDNTVHLYELPSFMERGRIFSK-HEVRVIEI  369 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~  369 (394)
                      ..|+.+.+|++............   .....  ..+.+ .. .++. +..++.+.+|+............. ..+....+
T Consensus       348 ~~d~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (466)
T COG2319         348 SDDGTIRLWDLRTGKPLKTLEGH---SNVLS--VSFSP-DG-RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF  420 (466)
T ss_pred             cCCCcEEeeecCCCceeEEecCC---ceEEE--EEECC-CC-CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEE
Confidence            67899999999876622222111   11222  23455 33 4444 788999999999998877777665 78999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEeCCC
Q 016134          370 GPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       370 sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .+++ .+++++.++.+++|++..
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         421 SPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEeccC
Confidence            9999 888899999999999764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5e-15  Score=138.30  Aligned_cols=206  Identities=18%  Similarity=0.171  Sum_probs=147.4

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      .+.++|.||++.|++++|+.+|.+|++||.|-.  |||.-..+.+...                    ..+|...|.++.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--------------------~TgHtaNIFsvK  100 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--------------------STGHTANIFSVK  100 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--------------------ecccccceeEEe
Confidence            456788999999999999999999999999987  6998866655321                    128888899988


Q ss_pred             ec----CCeEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCC
Q 016134          243 VG----RSRLCSGSMDNTIRVWELDT----------LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       243 ~~----~~~l~sgs~Dg~V~iwd~~~----------~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                      |-    ..++++|+.|..|+++|+..          .+....+..|...|..++..   ...+.++++||+|+-+|++..
T Consensus       101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            84    56799999999999999974          22345566788888888776   478999999999999999974


Q ss_pred             ceeeEee-------c-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC--------c----------eeEEEe
Q 016134          306 GNLEAAY-------T-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF--------M----------ERGRIF  359 (394)
Q Consensus       306 ~~~~~~~-------~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~--------~----------~~~~~~  359 (394)
                      .....-.       . ...-....  +...+|...++|++|+.|-..++||.+..        .          .+..+.
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk--~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~  258 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELK--CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS  258 (758)
T ss_pred             ccCCccccccHHHHHhchhhheee--eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence            3221111       0 11111222  23358888889999999999999994321        0          111111


Q ss_pred             c-----C-----C---cEEEEEECCCC--EEEEEeCCCeEEEEeCCCCC
Q 016134          360 S-----K-----H---EVRVIEIGPDK--LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       360 ~-----~-----~---~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .     .     .   .++-+.|+|+|  +|++=+. -.|.++|+..+.
T Consensus       259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~  306 (758)
T KOG1310|consen  259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK  306 (758)
T ss_pred             CccccCcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence            1     1     1   15678999999  5555444 479999998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=7.3e-13  Score=126.47  Aligned_cols=238  Identities=29%  Similarity=0.443  Sum_probs=176.4

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCC-CeEEEEe-cCCCC-EEEEEeC-CCc
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEK-AVSGIAL-PLRSD-KLFSGSR-DGT  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~-~V~~l~~-s~~~~-~l~sgs~-Dg~  197 (394)
                      ..++...+..+. +.+.+.++....    .++.+.+|+...+...+..+.++.. .+..+.+ .+++. .++..+. |+.
T Consensus        61 ~~~~~~~i~~~~-~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  135 (466)
T COG2319          61 LRGHEDSITSIA-FSPDGELLLSGS----SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT  135 (466)
T ss_pred             eeeccceEEEEE-ECCCCcEEEEec----CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence            445666777777 777777776555    4449999999887546777777554 7888888 88887 5555444 766


Q ss_pred             --eeecCC-CcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCceeEE
Q 016134          198 --AWNIES-SAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPVMT  270 (394)
Q Consensus       198 --vWd~~~-~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~~~  270 (394)
                        +|+... .... .+.                      .|...|..++|.  +..+++++. |+.+++|++...+.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (466)
T COG2319         136 VKLWDLSTPGKLIRTLE----------------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST  193 (466)
T ss_pred             EEEEEecCCCeEEEEEe----------------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence              699887 3322 222                      566677777776  446777775 99999999999889999


Q ss_pred             EcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceee-EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEE
Q 016134          271 LNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLE-AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL  346 (394)
Q Consensus       271 ~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~i  346 (394)
                      +..|...|.++.+.  +. .+++++.|+.|++||........ .+..+.... ..    .|++++. ++++++.|+.+++
T Consensus       194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~----~~~~~~~-~~~~~~~d~~~~~  267 (466)
T COG2319         194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS----SFSPDGS-LLASGSSDGTIRL  267 (466)
T ss_pred             eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE----eECCCCC-EEEEecCCCcEEE
Confidence            99999999999998  44 55555899999999988666665 344444332 22    4688886 7889999999999


Q ss_pred             EECCCCce-eEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          347 YELPSFME-RGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       347 wd~~~~~~-~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |++..... ...+ .+...|.++.|.|++ .+++++.|+.+++|++...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence            99997764 3333 336789999999977 7777888999999987754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.61  E-value=5.1e-15  Score=140.29  Aligned_cols=224  Identities=19%  Similarity=0.260  Sum_probs=155.0

Q ss_pred             CCeEEEEEcCCCceE----EEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          152 CRFLHSWFCGEGLTM----LAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~----~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      .|.|-|+++....++    +-.+. ....|+++.|+| |.+.|+.++.||.  ||.+..+........          |.
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t----------Pe  670 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT----------PE  670 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC----------cc
Confidence            358899998644222    11221 356899999999 7889999999999  699887654321111          11


Q ss_pred             EEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134          225 MLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV  299 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v  299 (394)
                      .+    ...|...|++|.|+   .+.|++++.|-+|++||+++.+....|.+|++.|..++|+  |+.+++.+.||+|++
T Consensus       671 ~~----lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  671 KI----LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             ee----eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence            11    11688999999998   5889999999999999999999999999999999999999  899999999999999


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe---CCCeEEEEECCCCc--eeEEEec--CCcEEEEEECCC
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC---NDNTVHLYELPSFM--ERGRIFS--KHEVRVIEIGPD  372 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs---~dg~I~iwd~~~~~--~~~~~~~--~~~v~~l~~sp~  372 (394)
                      |+-+..+..  ++..........-.+.|.-+|..+|++|-   ....|.+||.++-.  .+.....  .-.+.--.+.+|
T Consensus       747 y~Prs~e~p--v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D  824 (1012)
T KOG1445|consen  747 YEPRSREQP--VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD  824 (1012)
T ss_pred             eCCCCCCCc--cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCC
Confidence            998865432  22222222222222335568884444442   24568899877643  2222211  111222234455


Q ss_pred             C--EEEEEeCCCeEEEEeCCCC
Q 016134          373 K--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       373 ~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .  +|++|-.|..|.+|++-.+
T Consensus       825 s~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  825 SNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             CceEEEecCCCceEEEEEecCC
Confidence            5  8999999999999997654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=8.2e-14  Score=121.02  Aligned_cols=233  Identities=16%  Similarity=0.190  Sum_probs=161.3

Q ss_pred             CCCccceeeecccccccc--ccCCCeecCCCCCeEEEEEcCCC---ceEEEEec-----ccCCCeEEEEecC-CCCEEEE
Q 016134          123 SGDKSTSKKTTLKNVCCH--WLLGNCVRGDECRFLHSWFCGEG---LTMLAKLE-----GHEKAVSGIALPL-RSDKLFS  191 (394)
Q Consensus       123 ~g~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~i~iWd~~~~---~~~~~~l~-----~h~~~V~~l~~s~-~~~~l~s  191 (394)
                      ..|+-.++++. |.|+..  +---...+++   ++|+|.+...   .++...|.     .+..++++..|+. +-++|.+
T Consensus        93 fd~~YP~tK~~-wiPd~~g~~pdlLATs~D---~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt  168 (364)
T KOG0290|consen   93 FDHPYPVTKLM-WIPDSKGVYPDLLATSSD---FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT  168 (364)
T ss_pred             CCCCCCccceE-ecCCccccCcchhhcccC---eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence            35666777777 887652  3211111222   8999998632   22222232     3567899999986 6789999


Q ss_pred             EeCCCc--eeecCCCcE--E--EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeC
Q 016134          192 GSRDGT--AWNIESSAE--F--SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWEL  262 (394)
Q Consensus       192 gs~Dg~--vWd~~~~~~--~--~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~  262 (394)
                      +|-|-+  |||++++..  +  .+.                      .|..+|..|+|.   -+.|++.+.||+||+||+
T Consensus       169 SSiDTTCTiWdie~~~~~~vkTQLI----------------------AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  169 SSIDTTCTIWDIETGVSGTVKTQLI----------------------AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ecccCeEEEEEEeeccccceeeEEE----------------------ecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            999988  899999732  1  222                      577777777776   367999999999999999


Q ss_pred             CCCceeEEE-c--CCCCCcEEEEEc---CCEEEEEeCC-CcEEEEEeCCCc-eeeEeecccCCcceEEEEeeECCCCCcE
Q 016134          263 DTLEPVMTL-N--DHTDAPMSLLCW---DQFLLSCSLD-HTIKVWFATGRG-NLEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       263 ~~~~~~~~~-~--~h~~~v~~l~~~---~~~l~s~s~D-g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      +..+--..+ +  ....+...++|+   .+++|+-..| ..|.+.|+|... .+..+..|...+..+++    .|.....
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW----aPhS~~h  302 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW----APHSSSH  302 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe----cCCCCce
Confidence            986543322 2  224577788887   4678876665 479999999754 56667778776666655    6776668


Q ss_pred             EEEEeCCCeEEEEECCCCce------eEEEecCCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          335 LICACNDNTVHLYELPSFME------RGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~------~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      |+++++|..+.|||+.+.-.      +..+...++|+.+.|++..  .|+.+.. .++.+
T Consensus       303 ictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  303 ICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             eeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            99999999999999986422      2233347889999999865  6766654 34443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=6e-13  Score=113.03  Aligned_cols=269  Identities=13%  Similarity=0.102  Sum_probs=174.1

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .+|++  +...++.|+.+.++-+-.+.+-.-.  ..-+.+.......++|...+..++ +. +...+. +     .||.|
T Consensus        16 qa~sp--~~~~l~agn~~G~iav~sl~sl~s~--sa~~~gk~~iv~eqahdgpiy~~~-f~-d~~Lls-~-----gdG~V   83 (325)
T KOG0649|consen   16 QAISP--SKQYLFAGNLFGDIAVLSLKSLDSG--SAEPPGKLKIVPEQAHDGPIYYLA-FH-DDFLLS-G-----GDGLV   83 (325)
T ss_pred             HhhCC--cceEEEEecCCCeEEEEEehhhhcc--ccCCCCCcceeeccccCCCeeeee-ee-hhheee-c-----cCceE
Confidence            35555  6667778888888877665532210  000111122223478888888887 54 222222 1     12488


Q ss_pred             EEEEcCCCce-----EEEEec--cc-----CCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEE
Q 016134          156 HSWFCGEGLT-----MLAKLE--GH-----EKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV  221 (394)
Q Consensus       156 ~iWd~~~~~~-----~~~~l~--~h-----~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~  221 (394)
                      +-|......+     .+.+++  -|     --.|++|.+.|..+-|+.++.|+.+  ||+++|+..+             
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-------------  150 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-------------  150 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-------------
Confidence            8887753321     111111  12     2468999999988888888899985  9999998764             


Q ss_pred             cCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC----------CCCcEEEEEcCCEEE
Q 016134          222 ANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH----------TDAPMSLLCWDQFLL  289 (394)
Q Consensus       222 ~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h----------~~~v~~l~~~~~~l~  289 (394)
                              .+.+|++.|.++.-.  ...+++|++||++||||.+++++++.++..          ...|.+++.+.+.|+
T Consensus       151 --------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv  222 (325)
T KOG0649|consen  151 --------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV  222 (325)
T ss_pred             --------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE
Confidence                    233788888888873  678999999999999999999999887542          234677777788887


Q ss_pred             EEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEE
Q 016134          290 SCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIE  368 (394)
Q Consensus       290 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~  368 (394)
                      .|+ ...+.+|+++..++...+..... ...+    .|..+   .++++++.+.|.-|.+. +.....+.. ....++..
T Consensus       223 CGg-Gp~lslwhLrsse~t~vfpipa~-v~~v----~F~~d---~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s  292 (325)
T KOG0649|consen  223 CGG-GPKLSLWHLRSSESTCVFPIPAR-VHLV----DFVDD---CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSAS  292 (325)
T ss_pred             ecC-CCceeEEeccCCCceEEEecccc-eeEe----eeecc---eEEEeccccceeeeeec-cEEEEeccCCccceeeec
Confidence            665 46799999999887776653321 2222    23323   67778888889999875 333333333 44566666


Q ss_pred             ECCCC--EEEEEeCCCeEEEE
Q 016134          369 IGPDK--LFFTGDGAGMLGVW  387 (394)
Q Consensus       369 ~sp~~--~l~tgs~Dg~I~vW  387 (394)
                      |+..-  .|-.++..+.+.|+
T Consensus       293 ~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  293 WQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ccCCceEEEEecccceeeeee
Confidence            66554  55556667777765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=3.2e-13  Score=132.14  Aligned_cols=233  Identities=16%  Similarity=0.168  Sum_probs=170.0

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEE-------EecCCCCcEEEEEEc
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEF-------SLDGPVGEVYSMVVA  222 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~-------~~~~~~~~v~~l~~~  222 (394)
                      ..+.||++.+...+...+. -...|++++|+| +..+|+.|..+|.  +||+..+...       ....|..++..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            4799999987766666665 478999999999 5678888999999  5999877652       345688888888886


Q ss_pred             CC----EEEEEecC-----------------------C-------CCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC
Q 016134          223 NE----MLFAGAQD-----------------------G-------HTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       223 ~~----~l~~~~~~-----------------------~-------h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      .+    .+++++.|                       .       -...+++++|.   ++.++.|+.+|.|.-=+....
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            55    47777777                       1       12367778885   678999999999887333221


Q ss_pred             --------ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeC-CCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          266 --------EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFAT-GRGNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       266 --------~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                              +.+..+..|.++|+++.++   .++|++++ |.+++||... ...++..+..+..    ....++|+|....
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~----~v~~vaWSptrpa  455 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD----YVTDVAWSPTRPA  455 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc----eeeeeEEcCcCce
Confidence                    1233455688999999988   46666666 9999999876 4334433332222    2334567998887


Q ss_pred             EEEEEeCCCeEEEEECCCCcee--EEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          334 VLICACNDNTVHLYELPSFMER--GRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~~~~~--~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +++++..||.|.|||+......  ..... ....+.+.|++++ .|+.|...|.+.+|++.+
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            9999999999999999765332  22222 4456788888888 999999999999999964

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.3e-14  Score=125.96  Aligned_cols=145  Identities=13%  Similarity=0.290  Sum_probs=114.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cce
Q 016134          246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGV  320 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~  320 (394)
                      ..++++...|.|++||..+++.+..|+++...+..+.|.    +..+.+|+.||+|++||+|.......+.....+ ..-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            568889999999999999999999999999999888887    468999999999999999987666555544433 222


Q ss_pred             EEEEeeECCCCCcEEEEEeC----CCeEEEEECCCCce-eEEEec--CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          321 LALGGLNDPDGKPVLICACN----DNTVHLYELPSFME-RGRIFS--KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sgs~----dg~I~iwd~~~~~~-~~~~~~--~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      .++.  ..-.+. ++++|.+    +-.|.+||++..+. +..+..  ...|+++.|+|..  +|++||.||.|.|||+..
T Consensus       121 ~~ld--~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  121 ICLD--LNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             eEee--ccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            3331  122344 7777743    67899999998876 555543  6679999999988  999999999999999986


Q ss_pred             CC
Q 016134          392 KP  393 (394)
Q Consensus       392 ~~  393 (394)
                      ++
T Consensus       198 d~  199 (376)
T KOG1188|consen  198 DN  199 (376)
T ss_pred             Cc
Confidence            54

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.57  E-value=2.6e-12  Score=121.16  Aligned_cols=266  Identities=13%  Similarity=0.113  Sum_probs=156.0

Q ss_pred             cCCCCCcccccccCC-CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-C-ce
Q 016134           89 SGSEDRIPHVRNREN-PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-G-LT  165 (394)
Q Consensus        89 s~s~d~~~~~w~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~-~~  165 (394)
                      +.+.|+.|++|++++ +...-..         ....  ......+. ++|++.++..++.   .++.|.+|++.. + .+
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~---------~~~~--~~~~~~l~-~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~   71 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQ---------VVDV--PGQVQPMV-ISPDKRHLYVGVR---PEFRVLSYRIADDGALT   71 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeee---------EEec--CCCCccEE-ECCCCCEEEEEEC---CCCcEEEEEECCCCceE
Confidence            346689999999974 2221111         0111  11233445 8888888755433   345889999863 3 22


Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL  241 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l  241 (394)
                      .+.... ..+....++|+|++++|++++. ++.  +|++++.... ..      +..            . .+.....++
T Consensus        72 ~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~~~------------~-~~~~~~~~~  131 (330)
T PRK11028         72 FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------IQI------------I-EGLEGCHSA  131 (330)
T ss_pred             Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------eee------------c-cCCCcccEe
Confidence            233322 3345678999999999998875 443  6888643211 10      000            0 111223445


Q ss_pred             Eec--CCeE-EEEeCCCeEEEEeCCCCceeE-------EEcCCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeCCC--c
Q 016134          242 AVG--RSRL-CSGSMDNTIRVWELDTLEPVM-------TLNDHTDAPMSLLCW--DQFLLSCSL-DHTIKVWFATGR--G  306 (394)
Q Consensus       242 ~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~-------~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~~~--~  306 (394)
                      +++  ++++ ++...++.|.+||+++...+.       .+. .......+.|+  +++++++.+ +++|.+||+...  +
T Consensus       132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~  210 (330)
T PRK11028        132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE  210 (330)
T ss_pred             EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence            565  4565 455567999999997633221       111 12345678887  678877776 899999999742  2


Q ss_pred             --eeeEeecccC--CcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCc----eeEEEecCCcEEEEEECCCC-EEE
Q 016134          307 --NLEAAYTHKE--DNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFM----ERGRIFSKHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       307 --~~~~~~~~~~--~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~----~~~~~~~~~~v~~l~~sp~~-~l~  376 (394)
                        .+..+.....  ........+.++|+++ +|+++ ..++.|.+|++....    .+..+........+.++|+| +|+
T Consensus       211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~-~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~  289 (330)
T PRK11028        211 IECVQTLDMMPADFSDTRWAADIHITPDGR-HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI  289 (330)
T ss_pred             EEEEEEEecCCCcCCCCccceeEEECCCCC-EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence              2222221111  1111222345799999 55555 457899999996543    22222223456789999999 666


Q ss_pred             EEe-CCCeEEEEeCCC
Q 016134          377 TGD-GAGMLGVWKLLA  391 (394)
Q Consensus       377 tgs-~Dg~I~vWd~~~  391 (394)
                      ++. .++.|.+|+++.
T Consensus       290 va~~~~~~v~v~~~~~  305 (330)
T PRK11028        290 AAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEccCCcEEEEEEcC
Confidence            555 489999998853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.57  E-value=1.2e-13  Score=121.61  Aligned_cols=220  Identities=19%  Similarity=0.224  Sum_probs=148.7

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-  161 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-  161 (394)
                      +....++.|.|+.||+||.-++++..   |.++....    ..-.+..++. |+|++.+|..+-.     ++|||+|+. 
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lra---Sy~~ydh~----de~taAhsL~-Fs~DGeqlfaGyk-----rcirvFdt~R  188 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRA---SYRAYDHQ----DEYTAAHSLQ-FSPDGEQLFAGYK-----RCIRVFDTSR  188 (406)
T ss_pred             ccceeeeccccCceeeeecccccccc---chhhhhhH----HhhhhheeEE-ecCCCCeEeeccc-----ceEEEeeccC
Confidence            33355666779999999999988642   21111111    1113456777 9999999875543     389999993 


Q ss_pred             CC-ceEEEEec-----ccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134          162 EG-LTMLAKLE-----GHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       162 ~~-~~~~~~l~-----~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                      .+ ...+....     +..+-|.+++|+|- .+.++.++.-..  |+.......+.+                     ..
T Consensus       189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---------------------lg  247 (406)
T KOG2919|consen  189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---------------------LG  247 (406)
T ss_pred             CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee---------------------ec
Confidence            33 12222222     34788999999994 557888877666  566555554421                     11


Q ss_pred             CCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCC-CceeEEEcCCCC-CcEEEEEc----CCEEEEEeCCCcEEEEEeC
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDT-LEPVMTLNDHTD-APMSLLCW----DQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~-~~~~~~~~~h~~-~v~~l~~~----~~~l~s~s~Dg~i~vwd~~  303 (394)
                      +|.+.|+-|.|.  ++.|++|+. |-.|..||++. ..++..+..|.. .-..|.|+    +++|++|+.||.|++||+.
T Consensus       248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence            778888888886  788888885 78999999986 557778887776 44456665    8899999999999999998


Q ss_pred             C-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134          304 G-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND  341 (394)
Q Consensus       304 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d  341 (394)
                      . +..+..+..+......+++    +|--. ++++++-.
T Consensus       328 ~~gn~~sv~~~~sd~vNgvsl----nP~mp-ilatssGq  361 (406)
T KOG2919|consen  328 DLGNEVSVTGNYSDTVNGVSL----NPIMP-ILATSSGQ  361 (406)
T ss_pred             CCCCcccccccccccccceec----Ccccc-eeeeccCc
Confidence            7 4435555555544444444    77755 78877643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.56  E-value=1.9e-13  Score=133.72  Aligned_cols=234  Identities=19%  Similarity=0.266  Sum_probs=166.3

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCCCce-----EEE
Q 016134           95 IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGEGLT-----MLA  168 (394)
Q Consensus        95 ~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~~~~-----~~~  168 (394)
                      .+-+||+..+..  +.          -..-.+..|.++. ++| ....+++++++|    .|-+||+..+..     .-.
T Consensus       223 ~~~vW~~~~p~~--Pe----------~~~~~~s~v~~~~-f~p~~p~ll~gG~y~G----qV~lWD~~~~~~~~~s~ls~  285 (555)
T KOG1587|consen  223 VLLVWSLKNPNT--PE----------LVLESPSEVTCLK-FCPFDPNLLAGGCYNG----QVVLWDLRKGSDTPPSGLSA  285 (555)
T ss_pred             eEEEEecCCCCC--ce----------EEEecCCceeEEE-eccCCcceEEeeccCc----eEEEEEccCCCCCCCccccc
Confidence            678899997731  11          1222234677777 666 556678888888    999999975533     122


Q ss_pred             EecccCCCeEEEEecCCC--CEEEEEeCCCce--eecCCCcEE-------Eec------CCCCcEEEEEEcCC---EEEE
Q 016134          169 KLEGHEKAVSGIALPLRS--DKLFSGSRDGTA--WNIESSAEF-------SLD------GPVGEVYSMVVANE---MLFA  228 (394)
Q Consensus       169 ~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~v--Wd~~~~~~~-------~~~------~~~~~v~~l~~~~~---~l~~  228 (394)
                      ....|..+|+.+.|-.+.  .-|++++.||.|  |+++.-...       ...      .....+..+.|.+.   .+++
T Consensus       286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV  365 (555)
T KOG1587|consen  286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV  365 (555)
T ss_pred             ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence            334689999999996543  559999999995  987653331       011      23456788888765   7777


Q ss_pred             EecC--------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCc
Q 016134          229 GAQD--------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAP  278 (394)
Q Consensus       229 ~~~~--------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v  278 (394)
                      |+.+                          .|.+.|.++.++   ...+++++ |-+|+||... ...++..+..+...|
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v  444 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV  444 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence            7766                          467788888887   45566666 9999999987 677888888888889


Q ss_pred             EEEEEc---CCEEEEEeCCCcEEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          279 MSLLCW---DQFLLSCSLDHTIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       279 ~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      ++++|+   ...|+++..||.|.+||+.....  +......   ..++ ....+++.|+ +|++|...|++++|++..
T Consensus       445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~---~~~l-~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC---SPAL-TRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc---cccc-ceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            999999   56899999999999999975432  2222222   1111 1234577788 999999999999999964

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3.4e-13  Score=121.46  Aligned_cols=248  Identities=13%  Similarity=0.100  Sum_probs=174.1

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-----ceEEEEecc-cCCCeEEEEecCCCCEEEEEeC
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-----LTMLAKLEG-HEKAVSGIALPLRSDKLFSGSR  194 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-----~~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs~  194 (394)
                      ..++|...|..+. |+-.++||++    |+.|..+++|.++..     .+++..... |...|.|++|....++|++|..
T Consensus        51 D~~~H~GCiNAlq-FS~N~~~L~S----GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~  125 (609)
T KOG4227|consen   51 DVREHTGCINALQ-FSHNDRFLAS----GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER  125 (609)
T ss_pred             hhhhhccccceee-eccCCeEEee----cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence            6789999999999 9999999985    455669999998522     255555543 5689999999999999999999


Q ss_pred             CCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-ee-
Q 016134          195 DGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PV-  268 (394)
Q Consensus       195 Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~-  268 (394)
                      +++|  -|+++.+.+.+..+.                   ...+.|..+..+  .+.|++.+.++.|.+||.+..+ .+ 
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~-------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~  186 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANEN-------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS  186 (609)
T ss_pred             cceeEeeecccceeeeeeccc-------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence            9994  899988877544333                   223455555555  5789999999999999998754 22 


Q ss_pred             -EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce---EEEEeeECCCCCcEEEEEeCC
Q 016134          269 -MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV---LALGGLNDPDGKPVLICACND  341 (394)
Q Consensus       269 -~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~g~~~l~sgs~d  341 (394)
                       ..+........++.|+   ..+|++.+..+-+-+||++.+......+........   --+...|+|.|. .|++--.-
T Consensus       187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~  265 (609)
T KOG4227|consen  187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN-QFMSIRRG  265 (609)
T ss_pred             eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC-eehhhhcc
Confidence             2223345567888888   678999999999999999875432211111110111   113345899998 55544444


Q ss_pred             CeEEEEECCCCcee-EEEec-------CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          342 NTVHLYELPSFMER-GRIFS-------KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       342 g~I~iwd~~~~~~~-~~~~~-------~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ..-.+||+-+..+. .++.+       ...+.+++|..|..+++|+.+-.|.+|.+...+
T Consensus       266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence            44556788774433 33332       234778888877799999999999999987543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.54  E-value=4.8e-13  Score=121.11  Aligned_cols=255  Identities=16%  Similarity=0.152  Sum_probs=166.9

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC----
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG----  161 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~----  161 (394)
                      .++||++|..+|+|-++.....+.   ...+.....+..|.++|..+. |+|++..+|++..+|    .|.+|...    
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~---~~~V~y~s~Ls~H~~aVN~vR-f~p~gelLASg~D~g----~v~lWk~~~~~~   99 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGG---DMKVEYLSSLSRHTRAVNVVR-FSPDGELLASGGDGG----EVFLWKQGDVRI   99 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCC---ceeEEEeecccCCcceeEEEE-EcCCcCeeeecCCCc----eEEEEEecCcCC
Confidence            679999999999999997765331   123444456778999999999 999999999777666    99999876    


Q ss_pred             ----C-------CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--E
Q 016134          162 ----E-------GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--M  225 (394)
Q Consensus       162 ----~-------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~  225 (394)
                          +       .+...+.+.+|...|..++|+|++.++++++.|..  +||+..++.. .+..|...+..++|.|-  .
T Consensus       100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence                2       14567788899999999999999999999999998  6999999987 55678888888888764  3


Q ss_pred             EEEEecCCC----------------------------CCCEE-------------EEEec--CCeEEEEeC----C----
Q 016134          226 LFAGAQDGH----------------------------TRPVT-------------CLAVG--RSRLCSGSM----D----  254 (394)
Q Consensus       226 l~~~~~~~h----------------------------~~~V~-------------~l~~~--~~~l~sgs~----D----  254 (394)
                      +++-+.+.|                            .+.+.             .++|.  +.+|++.+.    .    
T Consensus       180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~  259 (434)
T KOG1009|consen  180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF  259 (434)
T ss_pred             hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence            333222210                            01111             11222  333433221    1    


Q ss_pred             -CeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--------------------CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          255 -NTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--------------------DQFLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       255 -g~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--------------------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                       ++.++|+-+. .++...+.....+...+.|+                    .-.++.+. .+.|.+||..+..++....
T Consensus       260 ~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~  338 (434)
T KOG1009|consen  260 RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD  338 (434)
T ss_pred             eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEe
Confidence             1223333221 22333344333444444433                    11344444 4679999988766655443


Q ss_pred             c-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          313 T-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       313 ~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      . |-...+    ..+|+++|. +|+..+.||...+-.++..++
T Consensus       339 nihy~~iT----Diaws~dg~-~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  339 NIHYSAIT----DIAWSDDGS-VLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eeeeeeec----ceeecCCCc-EEEEeccCCceEEEEEcchhc
Confidence            3 222222    345799999 888889999988887776543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.54  E-value=1e-14  Score=142.07  Aligned_cols=204  Identities=24%  Similarity=0.351  Sum_probs=150.0

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      +.++.+.+|..+|+|..|...|.++++|+.|..  ||.++++.++.                     +..||...|+.++
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------s~rGhs~ditdla  239 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---------------------SCRGHSGDITDLA  239 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---------------------cCCCCccccchhc
Confidence            456677899999999999999999999999998  79999988762                     2237888888888


Q ss_pred             ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeC-CCce------------
Q 016134          243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFAT-GRGN------------  307 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~-~~~~------------  307 (394)
                      .+  .-+++++|.|..|++|-+..+.++..+.+|++.|++++|+...  +.+.||++++||.+ ....            
T Consensus       240 vs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~  317 (1113)
T KOG0644|consen  240 VSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD  317 (1113)
T ss_pred             cchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCccccc
Confidence            86  4568999999999999999999999999999999999998543  77889999999987 1100            


Q ss_pred             -eeEeecc---------cCC-------------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCc
Q 016134          308 -LEAAYTH---------KED-------------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHE  363 (394)
Q Consensus       308 -~~~~~~~---------~~~-------------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~  363 (394)
                       ...+...         ...             .....+.+.++.+-..+.+++-.+-.+.+|++.++.+...+.. .+.
T Consensus       318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~  397 (1113)
T KOG0644|consen  318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE  397 (1113)
T ss_pred             ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence             0000000         000             0000000111112222445555566788899888877665544 778


Q ss_pred             EEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          364 VRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       364 v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      +..+.++|-+  ...+++.||...|||+-.
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence            9999999988  778899999999999854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=5.1e-14  Score=132.17  Aligned_cols=222  Identities=18%  Similarity=0.220  Sum_probs=155.3

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC--
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--  161 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--  161 (394)
                      ..-+++++.|.++++||+...    ++...-..-+.=..++|...|-++. ..+.+..    |++|+-|++|+.|++.  
T Consensus       306 ep~lit~sed~~lk~WnLqk~----~~s~~~~~epi~tfraH~gPVl~v~-v~~n~~~----~ysgg~Dg~I~~w~~p~n  376 (577)
T KOG0642|consen  306 EPVLITASEDGTLKLWNLQKA----KKSAEKDVEPILTFRAHEGPVLCVV-VPSNGEH----CYSGGIDGTIRCWNLPPN  376 (577)
T ss_pred             CCeEEEeccccchhhhhhccc----CCccccceeeeEEEecccCceEEEE-ecCCceE----EEeeccCceeeeeccCCC
Confidence            346789999999999999531    1111112222234679999998887 6665555    5556666699999553  


Q ss_pred             ----CC---ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecC--CCCcEEEEEEcCC------
Q 016134          162 ----EG---LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDG--PVGEVYSMVVANE------  224 (394)
Q Consensus       162 ----~~---~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~--~~~~v~~l~~~~~------  224 (394)
                          +.   ..+...+.||++.|+.+++++...+|++++.||++  |+........+..  ..+.-..+.+...      
T Consensus       377 ~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  377 QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhh
Confidence                22   25667889999999999999999999999999994  8876655522211  1111222222111      


Q ss_pred             ------------------EEEEEecC-C---CCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134          225 ------------------MLFAGAQD-G---HTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS  280 (394)
Q Consensus       225 ------------------~l~~~~~~-~---h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~  280 (394)
                                        +++..+.. .   -...+.-+.++  ..+.+++..|+.|+++|..+++++.....|...+++
T Consensus       457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts  536 (577)
T KOG0642|consen  457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS  536 (577)
T ss_pred             hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence                              11111110 1   12345555555  568999999999999999999999999999999999


Q ss_pred             EEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          281 LLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       281 l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      +++.  +.+|++++.|+.+++|.+....++.....|
T Consensus       537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             eeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            9998  789999999999999998776666554444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=8.7e-13  Score=131.85  Aligned_cols=266  Identities=15%  Similarity=0.154  Sum_probs=165.4

Q ss_pred             ccccCCCCCcccccccCCCCC-CCCCCCCCCccccccCCCCc--cceeeeccccc-cccccCCCeecCCCCCeEEEEEcC
Q 016134           86 WVSSGSEDRIPHVRNRENPGY-TGPKNSSSASSTVSDESGDK--STSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCG  161 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~-~~~~~s~~~~~~~~~~~g~~--~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~  161 (394)
                      .++++-+...++|||-+.+.. ++            +..|..  ..|+.+.+.+. +...+.+++.+    |.||||+--
T Consensus      1078 ~i~~ad~r~~i~vwd~e~~~~l~~------------F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d----GvIRIwk~y 1141 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNG------------FDNGAFPDTRVSDLELINEQDDALLLTASSD----GVIRIWKDY 1141 (1387)
T ss_pred             eeEEcCCcceEEEEecccCceecc------------ccCCCCCCCccceeeeecccchhheeeeccC----ceEEEeccc
Confidence            445544467889999887663 22            222221  23444443333 33344444444    499999752


Q ss_pred             ----CCceEEEEeccc-------CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          162 ----EGLTMLAKLEGH-------EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       162 ----~~~~~~~~l~~h-------~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                          ...+++....+-       .+.=.-+.|.....+|++++.-..  |||.+......-...                
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~---------------- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY---------------- 1205 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----------------
Confidence                223444433321       111133567665555555554444  799987766521111                


Q ss_pred             EecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCC--cEEEEEc--C-CEEEEEeCCCcE
Q 016134          229 GAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLE---PVMTLNDHTDA--PMSLLCW--D-QFLLSCSLDHTI  297 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~~~--v~~l~~~--~-~~l~s~s~Dg~i  297 (394)
                          +-..-|+++.-+   ++.++.|..||.|++||.+...   .+...+.|+..  |..+.+.  | ..|++++.||.|
T Consensus      1206 ----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1206 ----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred             ----CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence                223344555443   7899999999999999997633   46667788887  8888887  2 369999999999


Q ss_pred             EEEEeCCCcee--eEeecccCCc-ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-------CCcEEEE
Q 016134          298 KVWFATGRGNL--EAAYTHKEDN-GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-------KHEVRVI  367 (394)
Q Consensus       298 ~vwd~~~~~~~--~~~~~~~~~~-~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~v~~l  367 (394)
                      ++||+|.....  ..+..+.+.. ...++.  .++... ++|+|+. +.|+||++...........       ...+.|+
T Consensus      1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~--VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALT--VHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred             EEEecccCcccccceeeeccccCccceeee--eccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCccee
Confidence            99999984221  1222222111 123332  256665 9999988 9999999875432221111       4468999


Q ss_pred             EECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          368 EIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       368 ~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +|+|-. ++|.|+.|..|.||.-..
T Consensus      1358 ~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             eecchhHhhhhccCCceEEEeecCC
Confidence            999999 999999999999998654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=8.4e-11  Score=105.67  Aligned_cols=212  Identities=16%  Similarity=0.155  Sum_probs=144.8

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIES  203 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~  203 (394)
                      ++.... |+.+...+..+..+|     .+++..+.-.+.-.. ....-.|--+-|+  ..++|..+.+.-    +.++..
T Consensus         7 ti~~~~-~Nqd~~~lsvGs~~G-----yk~~~~~~~~k~~~~-~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    7 TINFIG-FNQDSTLLSVGSKDG-----YKIFSCSPFEKCFSK-DTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK   77 (391)
T ss_pred             ceeeee-eccceeEEEccCCCc-----eeEEecCchHHhhcc-cCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence            333344 566666666666555     355555433221111 1112234444444  345555554332    566666


Q ss_pred             CcEEEecCCCCcEEEEEEcCCEEEEEecC--------------------CCCCCEEEEEec--CCeEEEE-e-CCCeEEE
Q 016134          204 SAEFSLDGPVGEVYSMVVANEMLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSG-S-MDNTIRV  259 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sg-s-~Dg~V~i  259 (394)
                      +..+.......+|.+|.+..+.|++.-.+                    .+...+.++.++  +.+++-= + ..|.|.|
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            66655555566777777777766655544                    355567777776  3355542 2 3689999


Q ss_pred             EeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEE
Q 016134          260 WELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHT-IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI  336 (394)
Q Consensus       260 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~  336 (394)
                      ||..+.+++..+..|.+.+.+++|+  |.+|||+|+.|+ |||+.+.+++.+..++.......+.++  +|+|+++ +|+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL--~Fs~ds~-~L~  234 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL--SFSPDSQ-FLA  234 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE--EECCCCC-eEE
Confidence            9999999999999999999999999  899999999886 799999999999888876655555544  5899999 999


Q ss_pred             EEeCCCeEEEEECCC
Q 016134          337 CACNDNTVHLYELPS  351 (394)
Q Consensus       337 sgs~dg~I~iwd~~~  351 (394)
                      +.+..++|+||.+..
T Consensus       235 ~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEK  249 (391)
T ss_pred             EecCCCeEEEEEecc
Confidence            999999999998764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.4e-13  Score=127.06  Aligned_cols=263  Identities=16%  Similarity=0.184  Sum_probs=189.1

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeCCCcee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGTAW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~vW  199 (394)
                      +.+|+..|..|. |+..+.++++    |+.|..|.+||.......+.-..||...|..-.|-|  +...|++++.||.+-
T Consensus       138 L~~H~GcVntV~-FN~~Gd~l~S----gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  138 LNKHKGCVNTVH-FNQRGDVLAS----GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             ccCCCCccceee-ecccCceeec----cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            458888999998 8888888875    455669999999888566666678999999999987  457899999999941


Q ss_pred             ---ecCCCcE---EEecCCCCcEEEEEEcCC---EEEEEecC---------------------CCCC---CEEEEEec--
Q 016134          200 ---NIESSAE---FSLDGPVGEVYSMVVANE---MLFAGAQD---------------------GHTR---PVTCLAVG--  244 (394)
Q Consensus       200 ---d~~~~~~---~~~~~~~~~v~~l~~~~~---~l~~~~~~---------------------~h~~---~V~~l~~~--  244 (394)
                         -+.++.+   ..+..|.++|.-++..|+   .+++++.|                     .+..   ...+++.+  
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence               1223332   256678888888888766   55555555                     2333   45566665  


Q ss_pred             -CCeEEEEeCCCeEEEEeCCCCce------eEEEc------CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc---
Q 016134          245 -RSRLCSGSMDNTIRVWELDTLEP------VMTLN------DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG---  306 (394)
Q Consensus       245 -~~~l~sgs~Dg~V~iwd~~~~~~------~~~~~------~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~---  306 (394)
                       .+++++++.|..+++||.+....      +.++-      .....|++++|+  +.-|++.-.|-.|+++.-..+.   
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence             46899999999999999875321      23332      223468999998  4455555567788998533211   


Q ss_pred             ---------ee-eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-E
Q 016134          307 ---------NL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-L  374 (394)
Q Consensus       307 ---------~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~  374 (394)
                               .+ +.+++|....++-.+. .|-|... ++++|++-|.|.||+-.+++.+..+.. .+-|+||.-+|-- .
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVN-FfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVN-FFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceee-eccCccc-eEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence                     11 1244555444433332 3677777 999999999999999999988887776 5679999999988 9


Q ss_pred             EEEEeCCCeEEEEeCCC
Q 016134          375 FFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~~~  391 (394)
                      ||+++-|..|+||--.+
T Consensus       451 LAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  451 LASSGIDHDVKIWTPLT  467 (559)
T ss_pred             hhccCCccceeeecCCc
Confidence            99999999999997533

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.9e-12  Score=123.39  Aligned_cols=205  Identities=17%  Similarity=0.085  Sum_probs=134.8

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      .+..|.+||.... . .+.+..|...|...+|+|||++|+..+.+..     +||+++++...+....            
T Consensus       182 ~~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~------------  247 (429)
T PRK01742        182 QPYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR------------  247 (429)
T ss_pred             ceEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC------------
Confidence            3568999998654 3 4567788889999999999999998876542     6898887654332111            


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEEEE-eCCCeEEEE--eCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcE
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLCSG-SMDNTIRVW--ELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTI  297 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~sg-s~Dg~V~iw--d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i  297 (394)
                             +|.   ..++|+  ++.|+.+ +.++.+.||  |+.+++ ...+..+...+....|+  ++.|+..+ .++..
T Consensus       248 -------g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~  316 (429)
T PRK01742        248 -------GHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSP  316 (429)
T ss_pred             -------Ccc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCc
Confidence                   222   234565  5566654 467766555  666655 44566666677788888  66666554 57888


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEE
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~  376 (394)
                      .||++...........+..      ....|+|+|+ .|+..+.++ +.+||+.++...... .......+.|+||+ +|+
T Consensus       317 ~I~~~~~~~~~~~~l~~~~------~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~~~~~~~~sPdG~~i~  387 (429)
T PRK01742        317 QVYRMSASGGGASLVGGRG------YSAQISADGK-TLVMINGDN-VVKQDLTSGSTEVLS-STFLDESPSISPNGIMII  387 (429)
T ss_pred             eEEEEECCCCCeEEecCCC------CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeEEec-CCCCCCCceECCCCCEEE
Confidence            9998754322222222221      1234699999 666666554 666999887654322 22234567899999 888


Q ss_pred             EEeCCCeEEEEeC
Q 016134          377 TGDGAGMLGVWKL  389 (394)
Q Consensus       377 tgs~Dg~I~vWd~  389 (394)
                      .++.++.+.+|++
T Consensus       388 ~~s~~g~~~~l~~  400 (429)
T PRK01742        388 YSSTQGLGKVLQL  400 (429)
T ss_pred             EEEcCCCceEEEE
Confidence            8888998888875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=3.2e-12  Score=127.86  Aligned_cols=218  Identities=14%  Similarity=0.218  Sum_probs=147.6

Q ss_pred             eEEEEEcCCCceEEEEeccc---CCCeEEEEecC--CCCEEEEEeCCCc--eeecC-CC-cEEEecCCCCcEEEEEEcCC
Q 016134          154 FLHSWFCGEGLTMLAKLEGH---EKAVSGIALPL--RSDKLFSGSRDGT--AWNIE-SS-AEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h---~~~V~~l~~s~--~~~~l~sgs~Dg~--vWd~~-~~-~~~~~~~~~~~v~~l~~~~~  224 (394)
                      .|+|||.+.+ +.+..|..+   ...|+.+.+-.  |..+|++|+.||.  ||+-- .+ +..                 
T Consensus      1087 ~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~----------------- 1148 (1387)
T KOG1517|consen 1087 RIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP----------------- 1148 (1387)
T ss_pred             eEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc-----------------
Confidence            8999999887 555656544   46799999854  5678999999999  57632 21 111                 


Q ss_pred             EEEEEecC------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc---CCEEEEEe
Q 016134          225 MLFAGAQD------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW---DQFLLSCS  292 (394)
Q Consensus       225 ~l~~~~~~------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~---~~~l~s~s  292 (394)
                      .++++...      +-.+.-.-+.|.  ..+|++++.-..|+|||....++++.+.. -...|+++..+   ++.+++|.
T Consensus      1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred             eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence            11111110      111111234564  45566666688999999998777777753 34567888776   79999999


Q ss_pred             CCCcEEEEEeCCCce---eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE--Ee-c---CCc
Q 016134          293 LDHTIKVWFATGRGN---LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR--IF-S---KHE  363 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~--~~-~---~~~  363 (394)
                      .||.|++||.|....   +.....|.....++-+.  +.+.|-.-|++|+.||.|++||++.......  +. +   ...
T Consensus      1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s--lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS--LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred             cCCceEEeecccCCccccceeecccCCcccceeEE--eecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence            999999999987543   44455555543444433  4555543599999999999999998422211  11 1   234


Q ss_pred             EEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          364 VRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       364 v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++++..+++. .+|+|+. +.|+||++.-+
T Consensus      1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             ceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence            9999999998 9999988 99999998643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=6.3e-13  Score=119.76  Aligned_cols=208  Identities=11%  Similarity=0.118  Sum_probs=145.5

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      .+.+.+|.+.|++|.|+.++++|++|+.|..  ||+++.....+...   +|.-           ....|...|.||+|+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K---PI~~-----------~~~~H~SNIF~L~F~  114 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK---PIGV-----------MEHPHRSNIFSLEFD  114 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCC---Ccee-----------ccCccccceEEEEEc
Confidence            4556789999999999999999999999987  79986432211110   1100           111577899999998


Q ss_pred             --CCeEEEEeCCCeEEEEeCCCCceeEEEcC--CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc-eeeEeecccCC
Q 016134          245 --RSRLCSGSMDNTIRVWELDTLEPVMTLND--HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG-NLEAAYTHKED  317 (394)
Q Consensus       245 --~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~  317 (394)
                        ..++++|..+++|.+.|+++.+.+..+..  ..+.|+.+..+  .+.|++.+.++.|.+||.+... ....+.....+
T Consensus       115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~  194 (609)
T KOG4227|consen  115 LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG  194 (609)
T ss_pred             cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence              56799999999999999999888776642  23489988887  7899999999999999998765 33333222222


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee-EEEe------c-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER-GRIF------S-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~-~~~~------~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      ...  ..+.|+|....+|++.+..+-+-+||.+..... ....      . ...-.++.|+|+| .|++--.-..-.+||
T Consensus       195 ~~F--~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  195 KNF--YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD  272 (609)
T ss_pred             ccc--eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence            222  234589988889999999999999999875322 1111      1 1223567899988 555544434444555


Q ss_pred             CC
Q 016134          389 LL  390 (394)
Q Consensus       389 ~~  390 (394)
                      +.
T Consensus       273 ~~  274 (609)
T KOG4227|consen  273 FI  274 (609)
T ss_pred             ee
Confidence            43

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.48  E-value=1.1e-12  Score=125.24  Aligned_cols=246  Identities=13%  Similarity=0.159  Sum_probs=180.2

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR  153 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~  153 (394)
                      ...++.|  |++.++-+.++| +-++|.+.|..-.            ...||+.+|.+|+ ++-+|..+|++..+.    
T Consensus        16 ~d~afkP--DGsqL~lAAg~r-lliyD~ndG~llq------------tLKgHKDtVycVA-ys~dGkrFASG~aDK----   75 (1081)
T KOG1538|consen   16 NDIAFKP--DGTQLILAAGSR-LLVYDTSDGTLLQ------------PLKGHKDTVYCVA-YAKDGKRFASGSADK----   75 (1081)
T ss_pred             heeEECC--CCceEEEecCCE-EEEEeCCCccccc------------ccccccceEEEEE-EccCCceeccCCCce----
Confidence            4455566  888888766554 6689988887643            6789999999999 999999998766555    


Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~  230 (394)
                      .|.+|+..-...  .. -.|.+.|.|+.|+|-.+.|+|++-... +|..+..... .......+.+.+|.+|  +++.|.
T Consensus        76 ~VI~W~~klEG~--Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-K~kss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   76 SVIIWTSKLEGI--LK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             eEEEecccccce--ee-eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-hhhhheeEEEeeecCCCcEEEEec
Confidence            999998743312  12 269999999999999999999997665 8987655432 2233446777888877  666665


Q ss_pred             cC--------------------CCCCCEEEEEec-------CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134          231 QD--------------------GHTRPVTCLAVG-------RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       231 ~~--------------------~h~~~V~~l~~~-------~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~  283 (394)
                      .+                    +...+|++++|+       .+.+++.....++..|.+. |+.+..-+.-.-...|+.+
T Consensus       152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisY  230 (1081)
T KOG1538|consen  152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISY  230 (1081)
T ss_pred             cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhee
Confidence            54                    567899999996       2568888889999999886 5555433444445677877


Q ss_pred             c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      .  |.+++.|+.|+.+++|- +.+-.+.+.-...  .  ..+.+...|+++ .++.|+.||+|..|++-
T Consensus       231 f~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D--~--WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD--S--WIWTVQAKPNSQ-YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEe-ecCeEEeeccccc--e--eEEEEEEccCCc-eEEEEEccCeeehhhhH
Confidence            7  89999999999999995 3444444433322  2  233344589999 88999999999999864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.1e-11  Score=122.23  Aligned_cols=253  Identities=20%  Similarity=0.265  Sum_probs=184.5

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCC---CEEEEEeCCCc--eeecCC
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS---DKLFSGSRDGT--AWNIES  203 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~---~~l~sgs~Dg~--vWd~~~  203 (394)
                      ++..++++++..++...+.+     +|.|+...++ +++..+.+|..+++.+.+.|..   .++++++.||.  +||...
T Consensus        18 ~~~~avfSnD~k~l~~~~~~-----~V~VyS~~Tg-~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~   91 (792)
T KOG1963|consen   18 NKSPAVFSNDAKFLFLCTGN-----FVKVYSTATG-ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD   91 (792)
T ss_pred             eecccccccCCcEEEEeeCC-----EEEEEecchH-hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence            33444588888888755444     8999999998 8888999999999999998754   47889999999  599999


Q ss_pred             CcEEEecCCCCcEEEEEEcCC------EEEEEecC---------------------------------------------
Q 016134          204 SAEFSLDGPVGEVYSMVVANE------MLFAGAQD---------------------------------------------  232 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~------~l~~~~~~---------------------------------------------  232 (394)
                      +..++......++..+.+.+.      .+.....+                                             
T Consensus        92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~  171 (792)
T KOG1963|consen   92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS  171 (792)
T ss_pred             cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence            888755544444444444221      11111111                                             


Q ss_pred             -------------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC--C--ceeEEEcCCC
Q 016134          233 -------------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT--L--EPVMTLNDHT  275 (394)
Q Consensus       233 -------------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~--~--~~~~~~~~h~  275 (394)
                                                     .|...+++.+++  +++++++..||.|.+|.--.  .  .....+.=|.
T Consensus       172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH  251 (792)
T ss_pred             ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence                                           466667888887  78899999999999995322  1  2345566799


Q ss_pred             CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      ..|+++.|+  |.+|++|+..+.+.+|.+.+++ .+-+.....  .+  +...++||+. +.+....|+.|.+....+..
T Consensus       252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I--~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PI--LHIVVSPDSD-LYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--ee--EEEEEcCCCC-eEEEEecCceEEEEeccchh
Confidence            999999999  8999999999999999998876 222222222  22  2334689999 66667789999999988776


Q ss_pred             eeEEEec------------CCcEEEEEECCC-CEEEEEeCCCeEEEEeCCCCC
Q 016134          354 ERGRIFS------------KHEVRVIEIGPD-KLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       354 ~~~~~~~------------~~~v~~l~~sp~-~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ....+.+            ..-.+.++++|. +.++..+..|.|.+||+.++.
T Consensus       326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence            6655544            122678899994 488888899999999987653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.45  E-value=2.6e-12  Score=114.22  Aligned_cols=287  Identities=20%  Similarity=0.233  Sum_probs=177.1

Q ss_pred             ccccCCCCCcccccc-cCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC---
Q 016134           86 WVSSGSEDRIPHVRN-RENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG---  161 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~-~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~---  161 (394)
                      -+++.|.|+++|||- ++.+.+....           ..-.+...+... +++...-|..+...|    ++.-+.+.   
T Consensus        38 gv~~~s~drtvrv~lkrds~q~wpsI-----------~~~mP~~~~~~~-y~~e~~~L~vg~~ng----tvtefs~sedf  101 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSGQYWPSI-----------YHYMPSPCSAME-YVSESRRLYVGQDNG----TVTEFALSEDF  101 (404)
T ss_pred             CeEEccccceeeeEEeccccccCchh-----------hhhCCCCceEee-eeccceEEEEEEecc----eEEEEEhhhhh
Confidence            357889999999996 5556553211           111122333333 444433343333333    44444432   


Q ss_pred             CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce-eecC-CCc-------------------EEEecCCCCcEEEEE
Q 016134          162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-WNIE-SSA-------------------EFSLDGPVGEVYSMV  220 (394)
Q Consensus       162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v-Wd~~-~~~-------------------~~~~~~~~~~v~~l~  220 (394)
                      +.....+.+..|...|..+-|+-..+.+++.+.|..+ |... .+.                   ....-.+.++|..+.
T Consensus       102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr  181 (404)
T KOG1409|consen  102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK  181 (404)
T ss_pred             hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence            2235667778899999999999999999999999873 5432 111                   112234667777777


Q ss_pred             EcCC-EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeCC
Q 016134          221 VANE-MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSLD  294 (394)
Q Consensus       221 ~~~~-~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~D  294 (394)
                      +-+. .-..-...+|...+.+++|+  ..+|++|..|..|.+||+--.+ ....+.+|...|..+.+.  -..|++++.|
T Consensus       182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed  261 (404)
T KOG1409|consen  182 LEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED  261 (404)
T ss_pred             EeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence            7665 22233456999999999998  5789999999999999996544 355678899999998877  6789999999


Q ss_pred             CcEEEEEeCCCceeeEe-----------------------------ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEE
Q 016134          295 HTIKVWFATGRGNLEAA-----------------------------YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVH  345 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~  345 (394)
                      |.|.+||+........-                             ..|.-.....+++..-+.... ...+-+..=.+|
T Consensus       262 g~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~-~~p~mg~e~~vR  340 (404)
T KOG1409|consen  262 GGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRS-SYPTMGFEFSVR  340 (404)
T ss_pred             CeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcc-ccccccceeEEE
Confidence            99999998653221100                             000000000111111111111 122222233344


Q ss_pred             EEE--------CCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          346 LYE--------LPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       346 iwd--------~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +-|        .+. ..+ .+++  .+.|+.+.+...- +|+|++.|..|+|||+..
T Consensus       341 ~~~~c~~~i~~~~~-t~L-A~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  341 VCDSCYPTIKDEER-TPL-AIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             EecccchhhhcCCC-Ccc-ccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            443        332 112 1222  6779999988775 999999999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=2.2e-12  Score=117.57  Aligned_cols=186  Identities=20%  Similarity=0.180  Sum_probs=133.9

Q ss_pred             EEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe
Q 016134          178 SGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       178 ~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs  252 (394)
                      ..++|+.+|..|++++.||+  ||++.+.... ...                      .|..+|.+|.|+  +.+|++-+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~----------------------~~~~eV~DL~FS~dgk~lasig  205 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI----------------------AHHAEVKDLDFSPDGKFLASIG  205 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH----------------------hhcCccccceeCCCCcEEEEec
Confidence            78999999999999999999  7998776654 333                      456677777776  67899999


Q ss_pred             CCCeEEEEeCCCCceeEEEcC--CCCCcEEEEEc--C---C-EEEE-EeCCCcEEEEEeCCCcee-----eEeecccCCc
Q 016134          253 MDNTIRVWELDTLEPVMTLND--HTDAPMSLLCW--D---Q-FLLS-CSLDHTIKVWFATGRGNL-----EAAYTHKEDN  318 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~---~-~l~s-~s~Dg~i~vwd~~~~~~~-----~~~~~~~~~~  318 (394)
                      .| ..+||+.+++.+++....  -......+.|.  +   . ++++ ...-+.|+.||+.....-     .+........
T Consensus       206 ~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si  284 (398)
T KOG0771|consen  206 AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI  284 (398)
T ss_pred             CC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence            99 999999999977776652  22234555565  2   2 2222 233456777776543221     1111111123


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--CcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..+.+    +++|+ +++.|+.||.|-|++..+.+.+..++..  .-|+.+.|+||. ++++.+.|.+..|..+.-
T Consensus       285 Ssl~V----S~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  285 SSLAV----SDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEEE----cCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            33433    89999 9999999999999999998888877763  459999999998 999999999988887654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=2e-13  Score=125.49  Aligned_cols=207  Identities=14%  Similarity=0.190  Sum_probs=166.5

Q ss_pred             CeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCC--EEEEEec------CCCC---------C
Q 016134          176 AVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ------DGHT---------R  236 (394)
Q Consensus       176 ~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~------~~h~---------~  236 (394)
                      .-..+.++.+|++|+.|+..|.|  +|+.++...........|.++.|-.+  +++++..      |...         .
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~  210 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI  210 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence            34668889999999999999995  99999888765556667777777554  3333322      2222         3


Q ss_pred             CEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          237 PVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       237 ~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      .|..+.|-+  -+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+  +..+-+|...|+|.+|.....+++..+.
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL  290 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL  290 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence            444444542  468899999999999999999999888777777777766  6678889999999999999999999999


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                      .|..++..+++    +++|. +++|.+.|..++|||++....+.++...+....+++|..|+||.+-.| .|.||.
T Consensus       291 cH~g~V~siAv----~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~-~v~iw~  360 (545)
T KOG1272|consen  291 CHRGPVSSIAV----DRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD-HVQIWK  360 (545)
T ss_pred             hcCCCcceEEE----CCCCc-EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCC-eeeeeh
Confidence            99988888777    89998 999999999999999999998888877888999999988877777555 588885

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.1e-11  Score=120.87  Aligned_cols=231  Identities=12%  Similarity=0.031  Sum_probs=144.9

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEEEE
Q 016134           91 SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAK  169 (394)
Q Consensus        91 s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~  169 (394)
                      +.+..+.+||.+..+..             ...++...+.... |+|++.+++..... +....|++||+.++. +.+..
T Consensus       181 ~~~~~i~i~d~dg~~~~-------------~lt~~~~~v~~p~-wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~~~l~~  245 (429)
T PRK01742        181 SQPYEVRVADYDGFNQF-------------IVNRSSQPLMSPA-WSPDGSKLAYVSFE-NKKSQLVVHDLRSGARKVVAS  245 (429)
T ss_pred             CceEEEEEECCCCCCce-------------EeccCCCccccce-EcCCCCEEEEEEec-CCCcEEEEEeCCCCceEEEec
Confidence            34678999998765532             1223344567777 99999999765543 335579999997763 33444


Q ss_pred             ecccCCCeEEEEecCCCCEEEEEe-CCCc--e--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGS-RDGT--A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      +.+|.   ..++|+|||+.|+.++ .++.  |  ||+.+++...+..+                      ...+....|+
T Consensus       246 ~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~----------------------~~~~~~~~wS  300 (429)
T PRK01742        246 FRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG----------------------AGNNTEPSWS  300 (429)
T ss_pred             CCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC----------------------CCCcCCEEEC
Confidence            55543   4689999999888765 5665  4  46666655444332                      2334455665


Q ss_pred             --CCeEEE-EeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134          245 --RSRLCS-GSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       245 --~~~l~s-gs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                        ++.|+. ...++...||++... .....+ .+..  ....|+  ++.|+..+.++ +.+||+.+++........  ..
T Consensus       301 pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~  374 (429)
T PRK01742        301 PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LD  374 (429)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CC
Confidence              455444 445788888876432 222223 3333  345555  78888877765 566999877544322221  11


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECC--CCceeEEEec-CCcEEEEEECCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELP--SFMERGRIFS-KHEVRVIEIGPD  372 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~-~~~v~~l~~sp~  372 (394)
                      .    ...|+|+|+ +|+.++.++.+.+|++.  ++..+..+.. ...+...+|+|-
T Consensus       375 ~----~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        375 E----SPSISPNGI-MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             C----CceECCCCC-EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            1    234799999 78888888888888753  4666666654 556888899884

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.42  E-value=1.8e-11  Score=107.96  Aligned_cols=236  Identities=16%  Similarity=0.144  Sum_probs=163.0

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES  203 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~  203 (394)
                      .|++-+ |+.+...+|....+.    -|+|+.....  ++..+++..|...|++|.|+|..+.|++|+.|..  ||....
T Consensus        12 pitchA-wn~drt~iAv~~~~~----evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   12 PITCHA-WNSDRTQIAVSPNNH----EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ceeeee-ecCCCceEEeccCCc----eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            567777 899888888877766    6888877433  6899999999999999999999999999999988  798844


Q ss_pred             CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce----eEEEcCCCCC
Q 016134          204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP----VMTLNDHTDA  277 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~  277 (394)
                      +....              |..++    -.+....+++.|+  ++.|++|+.-..|.||-++..+-    .+.-+.+.+.
T Consensus        87 ~~~Wk--------------ptlvL----lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt  148 (361)
T KOG1523|consen   87 GGTWK--------------PTLVL----LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST  148 (361)
T ss_pred             CCeec--------------cceeE----EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence            33211              11000    0467788888887  68899999999999998865332    1122446788


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCc--------------eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRG--------------NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND  341 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d  341 (394)
                      |++++|+  +-+|++|+.|+.++||...-..              +.-.+.............+.|+|+|. .|+-.+.|
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hd  227 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHD  227 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCC
Confidence            9999999  5588899999999999642110              00001111111223333456899999 78888899


Q ss_pred             CeEEEEECCCCce-eEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEE
Q 016134          342 NTVHLYELPSFME-RGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVW  387 (394)
Q Consensus       342 g~I~iwd~~~~~~-~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vW  387 (394)
                      ..+.+-|.....+ +..+.. .-+..++.|-.+..++.++.|..=.++
T Consensus       228 s~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf  275 (361)
T KOG1523|consen  228 STVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF  275 (361)
T ss_pred             CceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence            9999999887653 222222 456677777666656666666443333

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=1.3e-10  Score=102.61  Aligned_cols=210  Identities=12%  Similarity=0.179  Sum_probs=141.8

Q ss_pred             eEEEEecCCCCEEEEEeCCCc-eeecCCCcEE---EecCCCCcEEEEEEcCC-EEEEEecC-------------------
Q 016134          177 VSGIALPLRSDKLFSGSRDGT-AWNIESSAEF---SLDGPVGEVYSMVVANE-MLFAGAQD-------------------  232 (394)
Q Consensus       177 V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~---~~~~~~~~v~~l~~~~~-~l~~~~~~-------------------  232 (394)
                      ...++|+.|...++.|..+|. |++.+--+..   ......-.+..|-|.-+ ..++|+..                   
T Consensus         8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~   87 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC   87 (346)
T ss_pred             eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence            344888888888888888887 6666532221   00000011112222222 22222211                   


Q ss_pred             ----CCCCCEEEEEecCCeEEEEeCCCeEEEEeCC-CCceeEEEcCCC--CCcEEEEEc-CC-EEEEE-eCCCcEEEEEe
Q 016134          233 ----GHTRPVTCLAVGRSRLCSGSMDNTIRVWELD-TLEPVMTLNDHT--DAPMSLLCW-DQ-FLLSC-SLDHTIKVWFA  302 (394)
Q Consensus       233 ----~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~--~~v~~l~~~-~~-~l~s~-s~Dg~i~vwd~  302 (394)
                          ....+|.++.+..+.|++.- ++.|.||... ..+.++.++...  ....+++-. +. +||.- -.-|.|+|-|+
T Consensus        88 i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL  166 (346)
T KOG2111|consen   88 IIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL  166 (346)
T ss_pred             EEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence                23467777777777777765 5789999987 456666665322  233444333 33 44443 34689999999


Q ss_pred             CCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCceeEEEec---CCcEEEEEECCCC-EE
Q 016134          303 TGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT-VHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LF  375 (394)
Q Consensus       303 ~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l  375 (394)
                      ...+.  ...+..|...+.++++    +-+|. ++||++..|+ |||||..++.++.++..   ...|.+|+|+|+. +|
T Consensus       167 ~~~~~~~p~~I~AH~s~Iacv~L----n~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  167 ASTKPNAPSIINAHDSDIACVAL----NLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL  241 (346)
T ss_pred             hhcCcCCceEEEcccCceeEEEE----cCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence            86554  4677788877777776    78898 9999999997 79999999999999876   5569999999999 99


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 016134          376 FTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~~~  392 (394)
                      +.+|.-|+|+||.+...
T Consensus       242 avsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEcCCCeEEEEEeecC
Confidence            99999999999998763

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=1.7e-10  Score=101.81  Aligned_cols=208  Identities=13%  Similarity=0.157  Sum_probs=141.1

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC--c-------eeecCCCc
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG--T-------AWNIESSA  205 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg--~-------vWd~~~~~  205 (394)
                      |+.+..-++.+...|     .||++.+. ++.....+-+.+.+.-+..--..++|+-.+..+  .       |||=....
T Consensus        13 ~NQD~ScFava~~~G-----friyn~~P-~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen   13 FNQDHSCFAVATDTG-----FRIYNCDP-FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             EccCCceEEEEecCc-----eEEEecCc-hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            554443334344443     78998864 232222232333222222222345655444333  2       79976677


Q ss_pred             EEEecCCCCcEEEEEEcCCEEEEEecC--------------------CCCCCEEEEEec--CCeEEE-EeCCCeEEEEeC
Q 016134          206 EFSLDGPVGEVYSMVVANEMLFAGAQD--------------------GHTRPVTCLAVG--RSRLCS-GSMDNTIRVWEL  262 (394)
Q Consensus       206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~s-gs~Dg~V~iwd~  262 (394)
                      ++.......+|.++.+..+.+++....                    .....+.+++-.  ..+||. |-.-|.|.|-|+
T Consensus        87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL  166 (346)
T KOG2111|consen   87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL  166 (346)
T ss_pred             EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence            776667778999999999876666544                    112334444433  223433 445789999999


Q ss_pred             CCCce--eEEEcCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134          263 DTLEP--VMTLNDHTDAPMSLLCW--DQFLLSCSLDHT-IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       263 ~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                      ...+.  -..+.+|.+.|.+++..  |.++||+|..|+ |||||..+++.++.+........+.++  .|+|+.. +|++
T Consensus       167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i--aFSp~~s-~Lav  243 (346)
T KOG2111|consen  167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI--AFSPNSS-WLAV  243 (346)
T ss_pred             hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE--EeCCCcc-EEEE
Confidence            76554  46788999999999998  899999999997 899999999999998877666666655  5899999 9999


Q ss_pred             EeCCCeEEEEECCC
Q 016134          338 ACNDNTVHLYELPS  351 (394)
Q Consensus       338 gs~dg~I~iwd~~~  351 (394)
                      +|+.|+|+||.++.
T Consensus       244 sSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRD  257 (346)
T ss_pred             EcCCCeEEEEEeec
Confidence            99999999999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.41  E-value=1.9e-11  Score=107.90  Aligned_cols=204  Identities=11%  Similarity=0.054  Sum_probs=150.0

Q ss_pred             EecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          169 KLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       169 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                      .+.--..+|+|.+|++|...+|.+-....  |+.....+....                  ......|...|+.|+|.  
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~------------------~htls~Hd~~vtgvdWap~   66 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP------------------AHTLSEHDKIVTGVDWAPK   66 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee------------------ceehhhhCcceeEEeecCC
Confidence            33334679999999999999999887766  566655552211                  11333788899999998  


Q ss_pred             CCeEEEEeCCCeEEEEeCCC---CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134          245 RSRLCSGSMDNTIRVWELDT---LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG  319 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~---~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  319 (394)
                      .+.|++++.|..-+||....   .++...+..+....+++.|+  ++.|++++..+.|.||-++....--.......++.
T Consensus        67 snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir  146 (361)
T KOG1523|consen   67 SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR  146 (361)
T ss_pred             CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence            57899999999999999833   34555666789999999999  78999999999999998876443322222223333


Q ss_pred             eEEEEeeECCCCCcEEEEEeCCCeEEEEECC-----C-------------CceeEEE-ecCCcEEEEEECCCC-EEEEEe
Q 016134          320 VLALGGLNDPDGKPVLICACNDNTVHLYELP-----S-------------FMERGRI-FSKHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-----~-------------~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs  379 (394)
                      ....++.|+|++- +|++|+.|+..+||..-     .             +++..++ ...+.|..+.|+|+| .|+-.+
T Consensus       147 Stv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  147 STVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             cceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            3334456899988 99999999999999631     1             1222233 235679999999999 999999


Q ss_pred             CCCeEEEEeCCC
Q 016134          380 GAGMLGVWKLLA  391 (394)
Q Consensus       380 ~Dg~I~vWd~~~  391 (394)
                      .|..+.+=|...
T Consensus       226 Hds~v~~~da~~  237 (361)
T KOG1523|consen  226 HDSTVSFVDAAG  237 (361)
T ss_pred             CCCceEEeecCC
Confidence            999999877554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=2.7e-12  Score=120.35  Aligned_cols=153  Identities=22%  Similarity=0.328  Sum_probs=121.0

Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCC
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                      ||++-|+|+.|+  |.+|++||.|-.+.|||.-..++++.+ .+|...|.++.|.    +..+++|..|..|+++|+...
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence            899999999997  899999999999999999888888877 4799999999997    568999999999999999742


Q ss_pred             ----------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE-------Eec----CCcE
Q 016134          306 ----------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR-------IFS----KHEV  364 (394)
Q Consensus       306 ----------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~-------~~~----~~~v  364 (394)
                                +....+..|...+..++.    .|++.+.+.++++||+|+-||++.......       +..    --..
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~----~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIAT----APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheec----CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence                      222233334444444444    678867999999999999999987421111       110    2247


Q ss_pred             EEEEECCCC--EEEEEeCCCeEEEEeC
Q 016134          365 RVIEIGPDK--LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       365 ~~l~~sp~~--~l~tgs~Dg~I~vWd~  389 (394)
                      .++.++|..  +|+.|+.|--.++||.
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhh
Confidence            889999988  9999999999999993

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.36  E-value=9.1e-10  Score=103.80  Aligned_cols=216  Identities=19%  Similarity=0.216  Sum_probs=130.0

Q ss_pred             CCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCC-CcEEEecCCCCcEEEEEEcCC
Q 016134          151 ECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIES-SAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       151 ~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~-~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      .++.|++|++.+.  .+.+..+. +.+....++++|++++|+.++. ++.  +|+++. +........            
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------------   76 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------------   76 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------------
Confidence            3458999999632  24556554 3466788999999999987765 443  488763 322111000            


Q ss_pred             EEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEEeCCC-C---ceeEEEcCCCCCcEEEEEc--CCEEEEE-eCC
Q 016134          225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVWELDT-L---EPVMTLNDHTDAPMSLLCW--DQFLLSC-SLD  294 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~~-~---~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~D  294 (394)
                              ........+.++  +++|++++ .++.|.+||+++ +   +.+..+. +...+..+.++  +++++++ ..+
T Consensus        77 --------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         77 --------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             --------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCC
Confidence                    111223456666  56666665 488999999964 2   2333333 23345667777  6666554 457


Q ss_pred             CcEEEEEeCCCceeeE-----eecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCC--Cc--eeEEEec----
Q 016134          295 HTIKVWFATGRGNLEA-----AYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPS--FM--ERGRIFS----  360 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~--~~--~~~~~~~----  360 (394)
                      +.|.+||+.+...+..     ..... .....  .+.|+|+++ +|++.. .+++|.+|++..  ++  .+..+..    
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~--~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~  223 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPR--HMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD  223 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCC-CCCCc--eEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence            9999999976433221     11111 11111  234699999 555454 489999999973  22  2323221    


Q ss_pred             ---CCcEEEEEECCCC-EEEEEe-CCCeEEEEeCCCC
Q 016134          361 ---KHEVRVIEIGPDK-LFFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       361 ---~~~v~~l~~sp~~-~l~tgs-~Dg~I~vWd~~~~  392 (394)
                         ......+.++|++ +|+++. .++.|.+|+++.+
T Consensus       224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence               1123468899999 677764 5789999998654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1.2e-11  Score=112.81  Aligned_cols=169  Identities=18%  Similarity=0.189  Sum_probs=125.3

Q ss_pred             eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEE
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFS  208 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~  208 (394)
                      ..++ ++.++..++++..+|    ++|||+..+. ..+.....|.+.|.+|.|+|||++|++-+.|.. ||+.+++..+.
T Consensus       148 k~va-f~~~gs~latgg~dg----~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVA-FNGDGSKLATGGTDG----TLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALA  221 (398)
T ss_pred             eEEE-EcCCCCEeeeccccc----eEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhh
Confidence            4555 888888888777666    9999997665 667777889999999999999999999999955 89999985442


Q ss_pred             ecC---CCCcEEEEEEcCC-----EEEEEecC-------------------------CCCCCEEEEEec--CCeEEEEeC
Q 016134          209 LDG---PVGEVYSMVVANE-----MLFAGAQD-------------------------GHTRPVTCLAVG--RSRLCSGSM  253 (394)
Q Consensus       209 ~~~---~~~~v~~l~~~~~-----~l~~~~~~-------------------------~h~~~V~~l~~~--~~~l~sgs~  253 (394)
                      ...   .......+.|+.+     .++.+...                         .-...|.+++.+  |++++.|+.
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence            211   1111222333222     11111111                         123478888886  899999999


Q ss_pred             CCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134          254 DNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~  304 (394)
                      ||.|-|++..+.++++-+ +.|...|+.+.|.  .+++++.+.|.+..|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999988887766 4699999999999  57888888899988887754

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=115.73  Aligned_cols=176  Identities=14%  Similarity=0.142  Sum_probs=132.5

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC---EE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE---ML  226 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~---~l  226 (394)
                      ||.+.|.+-.  .+.-+...+|.++|.+-.|+|||.-|+|++.||.  +|.-...-...+.....+|++++|.|+   .+
T Consensus        84 DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   84 DGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             CceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            4466666542  2556677899999999999999999999999999  598654443456667788999999987   44


Q ss_pred             EEEecC----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCE
Q 016134          227 FAGAQD----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQF  287 (394)
Q Consensus       227 ~~~~~~----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~  287 (394)
                      ++.+..                .|.+-|.++.|+  .+++++|++|-..+|||.. |..+.+-..|..+|++++|. +..
T Consensus       162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~  240 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKD  240 (737)
T ss_pred             EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccc
Confidence            444332                799999999998  6899999999999999975 67777778899999999999 445


Q ss_pred             EEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEE
Q 016134          288 LLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLY  347 (394)
Q Consensus       288 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iw  347 (394)
                      ++.++. +++|+=.             .....++  ...|++||. .+++|+..|.+.+=
T Consensus       241 ~~v~S~-nt~R~~~-------------p~~GSif--nlsWS~DGT-Q~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  241 YLLWSY-NTARFSS-------------PRVGSIF--NLSWSADGT-QATCGTSTGQLIVA  283 (737)
T ss_pred             eeeeee-eeeeecC-------------CCccceE--EEEEcCCCc-eeeccccCceEEEe
Confidence            555543 4555111             1112233  445799999 89989888877654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=2.3e-10  Score=108.16  Aligned_cols=255  Identities=12%  Similarity=0.128  Sum_probs=169.5

Q ss_pred             CCccceeeecccccccccc-CCCeecCCCCCeEEEEEcCCCceEEEEeccc--CCCeEEEEecCCCCEEEEEeCCCce-e
Q 016134          124 GDKSTSKKTTLKNVCCHWL-LGNCVRGDECRFLHSWFCGEGLTMLAKLEGH--EKAVSGIALPLRSDKLFSGSRDGTA-W  199 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~-~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~l~sgs~Dg~v-W  199 (394)
                      +++..-+.+. .+|++.|+ |++.+--    .|++||+.+-   ...+.-|  ...|.-.-++.|-..++---.|.+| +
T Consensus        49 e~p~ast~ik-~s~DGqY~lAtG~YKP----~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief  120 (703)
T KOG2321|consen   49 EMPTASTRIK-VSPDGQYLLATGTYKP----QIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF  120 (703)
T ss_pred             CCccccceeE-ecCCCcEEEEecccCC----ceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeee
Confidence            4445556666 89999997 4455544    8999999653   3333344  3445555556666666666667664 3


Q ss_pred             ecCCCcEEEecCCCCcEEEEEE---cCCEEEEEecC-----------------CCCCCEEEEEec--CCeEEEEeCCCeE
Q 016134          200 NIESSAEFSLDGPVGEVYSMVV---ANEMLFAGAQD-----------------GHTRPVTCLAVG--RSRLCSGSMDNTI  257 (394)
Q Consensus       200 d~~~~~~~~~~~~~~~v~~l~~---~~~~l~~~~~~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V  257 (394)
                      ....|....+.- ...-..|.+   +-+++++|+..                 .....++++..+  ..+|++|+.||.|
T Consensus       121 Hak~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  121 HAKYGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             hhhcCeeeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            333333221100 000111222   22233333322                 334778888887  6789999999999


Q ss_pred             EEEeCCCCceeEEEcC------CCC-----CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEE
Q 016134          258 RVWELDTLEPVMTLND------HTD-----APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG  324 (394)
Q Consensus       258 ~iwd~~~~~~~~~~~~------h~~-----~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  324 (394)
                      ..||.++...+.++..      |.+     .|+++.|.  |-.+++|..+|.+.|||++..+++.. ..|.....+..+.
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLD  278 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeec
Confidence            9999998776666543      333     49999998  56899999999999999998776543 3455555566555


Q ss_pred             eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          325 GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       325 ~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +.-. +++..|++. +...++|||-.+++....+.....++.+++-|++ +++++-++..+..|=+.
T Consensus       279 ~~~~-~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  279 WQDT-DQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             cccc-CCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            4333 334356544 5678999999999999988888889999999998 99999999888776543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.33  E-value=2.9e-10  Score=115.84  Aligned_cols=227  Identities=16%  Similarity=0.207  Sum_probs=152.1

Q ss_pred             eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCc----E----EEecCCCCcEEEEEEcCC--EEEEEec
Q 016134          165 TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSA----E----FSLDGPVGEVYSMVVANE--MLFAGAQ  231 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~----~----~~~~~~~~~v~~l~~~~~--~l~~~~~  231 (394)
                      .++..+..|+..|..++.+++. .+|+|||.||+  +|+...-.    .    .+.......+..+...+.  .+++++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            7889999999999999998755 99999999999  69976421    1    122334556666665544  7777777


Q ss_pred             CC--------C------------------CCCEEEE-Eec---CC-eEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCc
Q 016134          232 DG--------H------------------TRPVTCL-AVG---RS-RLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAP  278 (394)
Q Consensus       232 ~~--------h------------------~~~V~~l-~~~---~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v  278 (394)
                      ||        |                  .+.+..+ +|.   .. .++.+..-+.|..||++......+++  ...+.|
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            71        2                  1222222 222   34 67788888999999998866555443  245789


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc-CCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCCCce
Q 016134          279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK-EDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPSFME  354 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~~~~  354 (394)
                      ++++.+  +..++.|...|.+.+||+|=...+..+.... .+..-+.++. +.+.....+++++ ..+.|.+|++.++..
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~-~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP-TYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec-cCCCCceEEEecccCCCceeeeecccCcc
Confidence            999998  7899999999999999999776666554322 2223333322 2333342344444 578999999998865


Q ss_pred             eEEEecC---------------------CcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          355 RGRIFSK---------------------HEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       355 ~~~~~~~---------------------~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ...+...                     ..+.+.-..+++.+.+|+.|..|+.||....
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            5544321                     1123333333449999999999999998654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=1.1e-09  Score=98.24  Aligned_cols=274  Identities=13%  Similarity=0.142  Sum_probs=162.2

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCC
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDE  151 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~  151 (394)
                      -+..+|..  .--.++.+..|.+||++|-.......            -.....+.|++++ |.| +..-++.+|..|  
T Consensus       101 lr~~aWhq--H~~~fava~nddvVriy~ksst~pt~------------Lks~sQrnvtcla-wRPlsaselavgCr~g--  163 (445)
T KOG2139|consen  101 LRGVAWHQ--HIIAFAVATNDDVVRIYDKSSTCPTK------------LKSVSQRNVTCLA-WRPLSASELAVGCRAG--  163 (445)
T ss_pred             eeeEeech--hhhhhhhhccCcEEEEeccCCCCCce------------ecchhhcceeEEE-eccCCcceeeeeecce--
Confidence            45666765  22345677889999999987632221            2334557899999 888 566678888887  


Q ss_pred             CCeEEEEEcCCCceE-------------EEEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEec-CCCC
Q 016134          152 CRFLHSWFCGEGLTM-------------LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLD-GPVG  214 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~-------------~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~-~~~~  214 (394)
                         |-||........             +....+| .+|++|+|++||..|++++.+..   |||..++..+.+. ...+
T Consensus       164 ---IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  164 ---ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             ---eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence               889987422111             1222345 78999999999999999998877   7999999988654 2333


Q ss_pred             cEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCcEEEEEc--CCEEEEE
Q 016134          215 EVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAPMSLLCW--DQFLLSC  291 (394)
Q Consensus       215 ~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s~  291 (394)
                      .+.-+.|+||                    +++|+.+.-|+..++|+.. +..+.+-.. -.+.|....|+  |.+|+..
T Consensus       240 g~slLkwSPd--------------------gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  240 GFSLLKWSPD--------------------GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             ceeeEEEcCC--------------------CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEE
Confidence            3444444443                    5678888889999999543 333333222 34477777777  5544433


Q ss_pred             eCCCcEEEEEeCCCceeeEee--------------------cccCCcceEEEEeeECCCCCcEEEEEeCCC--------e
Q 016134          292 SLDHTIKVWFATGRGNLEAAY--------------------THKEDNGVLALGGLNDPDGKPVLICACNDN--------T  343 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--------~  343 (394)
                      .. +.-++|.+.-.+....+.                    .......--+-+.+|+|.|. +|++.-..+        .
T Consensus       299 ~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~  376 (445)
T KOG2139|consen  299 CS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLH  376 (445)
T ss_pred             Ec-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhh
Confidence            32 233444432111100000                    00000001112335799999 677654333        3


Q ss_pred             EEEEECCCCceeEEEe----cCCcEEEEEECC---CC-EEEEEeCCCeEEEEeCC
Q 016134          344 VHLYELPSFMERGRIF----SKHEVRVIEIGP---DK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       344 I~iwd~~~~~~~~~~~----~~~~v~~l~~sp---~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      |.+||.+..-.+....    .......+.|+|   ++ +|..+=..|.+.-|++.
T Consensus       377 i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  377 ISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             hhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            6778877543332221    123355566666   23 66666677777776653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.6e-09  Score=105.87  Aligned_cols=207  Identities=14%  Similarity=0.037  Sum_probs=127.1

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      ...|.+||....  ..+.+..|...+.+.+|+||++.|+..+.++.     +||+.+++...+....+..          
T Consensus       183 ~~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~----------  250 (433)
T PRK04922        183 RYALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGIN----------  250 (433)
T ss_pred             eEEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCc----------
Confidence            347899998543  23456667888999999999999998875542     5888887765443322222          


Q ss_pred             EEEecCCCCCCEEEEEec--CCeE-EEEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CCc--
Q 016134          227 FAGAQDGHTRPVTCLAVG--RSRL-CSGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DHT--  296 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~--  296 (394)
                                  .++.|+  ++.| ++.+.++  .|.+||+.+++. ..+..+........|+  ++.|+..+. ++.  
T Consensus       251 ------------~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~  317 (433)
T PRK04922        251 ------------GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQ  317 (433)
T ss_pred             ------------cCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCce
Confidence                        233454  4443 3444444  599999988764 4455555555677787  677776663 444  


Q ss_pred             EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe-CCC--eEEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134          297 IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC-NDN--TVHLYELPSFMERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       297 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~  373 (394)
                      |.++|+..++... +........    ...|+|+|+ .|+..+ .++  .|.+||+.+++.. .+..........|+|||
T Consensus       318 iy~~dl~~g~~~~-lt~~g~~~~----~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG  390 (433)
T PRK04922        318 IYRVAASGGSAER-LTFQGNYNA----RASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNG  390 (433)
T ss_pred             EEEEECCCCCeEE-eecCCCCcc----CEEECCCCC-EEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCC
Confidence            6666665554322 222111111    234699999 555443 332  6999999887654 33333345667999999


Q ss_pred             -EEEEEeCC---CeEEEEeCC
Q 016134          374 -LFFTGDGA---GMLGVWKLL  390 (394)
Q Consensus       374 -~l~tgs~D---g~I~vWd~~  390 (394)
                       +|+..+.+   ..|.++++.
T Consensus       391 ~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        391 SMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CEEEEEEecCCceEEEEEECC
Confidence             55554442   346666664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.28  E-value=1e-09  Score=111.94  Aligned_cols=260  Identities=12%  Similarity=0.176  Sum_probs=163.5

Q ss_pred             CccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce
Q 016134          125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA  198 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v  198 (394)
                      |...+.++++-++...++++++.+|    +|++|+...-      .+...++.-....+.++.+.+.++.+|.++.||.|
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DG----tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDG----TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCc----eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            3344555553555557776665555    9999998421      23344444457889999999999999999999993


Q ss_pred             --eecCC--Cc-----EEEec--CCCCcEEEE-EEcCC----EEEEEecC--------------------CCCCCEEEEE
Q 016134          199 --WNIES--SA-----EFSLD--GPVGEVYSM-VVANE----MLFAGAQD--------------------GHTRPVTCLA  242 (394)
Q Consensus       199 --Wd~~~--~~-----~~~~~--~~~~~v~~l-~~~~~----~l~~~~~~--------------------~h~~~V~~l~  242 (394)
                        .+++.  ..     +.+..  ...+.+.+| +|...    .++.++.-                    ...+.|++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence              44433  11     11111  122223332 23221    23333222                    3457899999


Q ss_pred             ec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc---C--CEEEEEe--CCCcEEEEEeCCCceeeEee
Q 016134          243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW---D--QFLLSCS--LDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~--~~l~s~s--~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      .+  ++.+++|...|.+.+||++-+.++..++ .+..+|..+..+   +  ...++++  ..+.|-+|++.++.....+.
T Consensus      1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             ecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence            98  6789999999999999999888887775 345677777766   3  4455444  47889999999886665554


Q ss_pred             cccC-C-------cc------eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee-----------------------
Q 016134          313 THKE-D-------NG------VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER-----------------------  355 (394)
Q Consensus       313 ~~~~-~-------~~------~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~-----------------------  355 (394)
                      .... +       ..      ..+...+--++++.++.+|+.|..|+.||....+..                       
T Consensus      1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i 1362 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTI 1362 (1431)
T ss_pred             cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcccccc
Confidence            4311 0       00      000000112344448999999999999997542111                       


Q ss_pred             ------E-------------------E---------EecCCcEEEEEECCCC--EEEEEeCCCeEEEEe
Q 016134          356 ------G-------------------R---------IFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWK  388 (394)
Q Consensus       356 ------~-------------------~---------~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd  388 (394)
                            .                   .         ..|.+.|+.+++....  +|++++.||.|+||.
T Consensus      1363 ~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1363 PGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                  0                   0         0013458888777665  999999999999994

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.3e-09  Score=97.86  Aligned_cols=227  Identities=15%  Similarity=0.133  Sum_probs=145.0

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCC-CCEEEEEeCCCc-eeecCCC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLR-SDKLFSGSRDGT-AWNIESS  204 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~-~~~l~sgs~Dg~-vWd~~~~  204 (394)
                      .++.++ |++...-+|.+..+-    +|||+|....  ....++ ..+..|+|++|-|. ++-|+.|...|. ||.....
T Consensus       100 dlr~~a-WhqH~~~fava~ndd----vVriy~ksst--~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~t  172 (445)
T KOG2139|consen  100 DLRGVA-WHQHIIAFAVATNDD----VVRIYDKSST--CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRT  172 (445)
T ss_pred             ceeeEe-echhhhhhhhhccCc----EEEEeccCCC--CCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcc
Confidence            456666 777555555555444    9999997653  233333 34678999999984 467888998888 7987543


Q ss_pred             cEEEe-----cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCceeEEEcCCCC
Q 016134          205 AEFSL-----DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       205 ~~~~~-----~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      .....     ..+..+|.            ...+| ..|+++.|+  +..+++++. |..|.|||..++.++.-...-.+
T Consensus       173 ln~~r~~~~~s~~~~qvl------------~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVL------------QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             cccccccccccccchhhe------------eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence            22211     11111111            11245 789999997  667888775 67999999999887655434456


Q ss_pred             CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-
Q 016134          277 APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-  353 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-  353 (394)
                      .+.-+.|+  +.+|+.+.-|+..++|+...............    .....+|+|+|..+|++.+..-  ++|.+.... 
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg----rvqtacWspcGsfLLf~~sgsp--~lysl~f~~~  313 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG----RVQTACWSPCGSFLLFACSGSP--RLYSLTFDGE  313 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC----ceeeeeecCCCCEEEEEEcCCc--eEEEEeecCC
Confidence            78888888  78999999999999996554332222222222    2234458999997777766444  444432110 


Q ss_pred             -----------eeE---EEe------c----CCcEEEEEECCCC-EEEEEeC
Q 016134          354 -----------ERG---RIF------S----KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       354 -----------~~~---~~~------~----~~~v~~l~~sp~~-~l~tgs~  380 (394)
                                 ...   .+.      .    .+++.+++|.|.| +|++.-.
T Consensus       314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence                       000   000      0    3568999999999 7777554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.26  E-value=1.1e-10  Score=109.44  Aligned_cols=153  Identities=18%  Similarity=0.210  Sum_probs=112.4

Q ss_pred             CCCEEEEEec---CCeEEEEeCCCeEEEEeCCC--------------C--------------ceeEEEcCCCCCcEEEEE
Q 016134          235 TRPVTCLAVG---RSRLCSGSMDNTIRVWELDT--------------L--------------EPVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       235 ~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~--------------~--------------~~~~~~~~h~~~v~~l~~  283 (394)
                      ...|+|+.|-   ..+++.+..+|.+.+||..-              +              .++..+.--.+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            3678888884   56777888889999997631              1              111112112346777777


Q ss_pred             c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134          284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-  360 (394)
Q Consensus       284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-  360 (394)
                      +  +++||+.+.||.+||||..+.+.+..+....  ...+  +++|+|||+ +|++|++|.-|.||.+...+.+..=.. 
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF--GGLL--CvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF--GGLL--CVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--cceE--EEEEcCCcc-EEEecCCcceEEEEEeccceEEEecccc
Confidence            7  8999999999999999998766555444332  2333  446899999 999999999999999998877665433 


Q ss_pred             CCcEEEEEECC------------------------------------------------CC-EEEEEeCCCeEEEEeCCC
Q 016134          361 KHEVRVIEIGP------------------------------------------------DK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       361 ~~~v~~l~~sp------------------------------------------------~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +.+|..|+|.|                                                .. .|.+.+.|-++.+||+.+
T Consensus       374 kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  374 KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence            77899999882                                                11 578888999999999976


Q ss_pred             C
Q 016134          392 K  392 (394)
Q Consensus       392 ~  392 (394)
                      +
T Consensus       454 D  454 (636)
T KOG2394|consen  454 D  454 (636)
T ss_pred             h
Confidence            4

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=5.4e-09  Score=101.95  Aligned_cols=210  Identities=13%  Similarity=0.035  Sum_probs=125.4

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc----eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT----AWNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      ...|.+||.... . .+.+..+...+...+|+|||+.|+..+.+ +.    +|++.+++...+....+.+..+.|+|+  
T Consensus       178 ~~~l~~~d~dg~-~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD--  253 (429)
T PRK03629        178 PYELRVSDYDGY-N-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD--  253 (429)
T ss_pred             ceeEEEEcCCCC-C-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCC--
Confidence            347888888654 2 23344567889999999999999876543 22    588887765543322222222333332  


Q ss_pred             EEEecCCCCCCEEEEEecCCeEEE-EeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC-CcEEEE
Q 016134          227 FAGAQDGHTRPVTCLAVGRSRLCS-GSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD-HTIKVW  300 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~l~s-gs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D-g~i~vw  300 (394)
                                        ++.|+. .+.++  .|.+||+++++..+ +..+...+....|+  ++.|+..+.+ +...||
T Consensus       254 ------------------G~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        254 ------------------GSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY  314 (429)
T ss_pred             ------------------CCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence                              444443 23344  58899998877654 44444566778887  6777766653 444555


Q ss_pred             --EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--CeEEEEECCCCceeEEEecCCcEEEEEECCCC-EE
Q 016134          301 --FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LF  375 (394)
Q Consensus       301 --d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l  375 (394)
                        |+..++. ..+........    ...|+|+|+.+++++..+  ..|.+||+.+++.. .+..........|+||| +|
T Consensus       315 ~~d~~~g~~-~~lt~~~~~~~----~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i  388 (429)
T PRK03629        315 KVNINGGAP-QRITWEGSQNQ----DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMV  388 (429)
T ss_pred             EEECCCCCe-EEeecCCCCcc----CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEE
Confidence              5554433 23322221111    234699999444444333  35888999887543 33333334567899999 77


Q ss_pred             EEEeCCCe---EEEEeCC
Q 016134          376 FTGDGAGM---LGVWKLL  390 (394)
Q Consensus       376 ~tgs~Dg~---I~vWd~~  390 (394)
                      +..+.++.   +.+++++
T Consensus       389 ~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        389 IYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EEEEcCCCceEEEEEECC
Confidence            77777764   6677764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=6.6e-09  Score=101.72  Aligned_cols=210  Identities=12%  Similarity=-0.005  Sum_probs=128.5

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC---c--eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG---T--AWNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      ...|.++|....  ..+.+..|...+...+|+|||+.|+..+.++   .  +||+.+++...+....+.+....|+|+  
T Consensus       181 ~~~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD--  256 (435)
T PRK05137        181 IKRLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD--  256 (435)
T ss_pred             ceEEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC--
Confidence            347888887543  3455667888999999999999998877542   2  689988876554433333333333332  


Q ss_pred             EEEecCCCCCCEEEEEecCCeE-EEEeCCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEE
Q 016134          227 FAGAQDGHTRPVTCLAVGRSRL-CSGSMDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIK  298 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~l-~sgs~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~  298 (394)
                                        ++.| ++.+.++.  |.+||+++++. ..+..+........|+  ++.|+..+. ++  .|.
T Consensus       257 ------------------G~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy  317 (435)
T PRK05137        257 ------------------GRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLY  317 (435)
T ss_pred             ------------------CCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEE
Confidence                              4443 34455554  77779887765 4455565556667777  677776663 33  678


Q ss_pred             EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---CeEEEEECCCCceeEEEecCCcEEEEEECCCC-E
Q 016134          299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-L  374 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~  374 (394)
                      ++|+..++.. .+........    ...|+|+|+ .|+....+   ..|.+||+..+.. ..+.....+..+.|+||| .
T Consensus       318 ~~d~~g~~~~-~lt~~~~~~~----~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~  390 (435)
T PRK05137        318 VMNADGSNPR-RISFGGGRYS----TPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRV  390 (435)
T ss_pred             EEECCCCCeE-EeecCCCccc----CeEECCCCC-EEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCE
Confidence            8887655433 3322221111    224699999 55544332   3688888865443 333334457788999999 5


Q ss_pred             EEEEeC-C-----CeEEEEeCCC
Q 016134          375 FFTGDG-A-----GMLGVWKLLA  391 (394)
Q Consensus       375 l~tgs~-D-----g~I~vWd~~~  391 (394)
                      |+..+. .     ..|.++++..
T Consensus       391 i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        391 IMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             EEEEEccCCCCCcceEEEEECCC
Confidence            544333 2     2567777654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=5.8e-09  Score=101.77  Aligned_cols=199  Identities=12%  Similarity=0.052  Sum_probs=120.1

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      ..|.++|...  ...+.+..+...+.+.+|+|||+.|+..+.+..     +||+.+++...+....+.+           
T Consensus       176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-----------  242 (427)
T PRK02889        176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-----------  242 (427)
T ss_pred             cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-----------
Confidence            3577777643  233455678889999999999999988775432     5899888765543222222           


Q ss_pred             EEecCCCCCCEEEEEec--CCeEE-EEeCCCeEEEEe--CCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CCcEEE
Q 016134          228 AGAQDGHTRPVTCLAVG--RSRLC-SGSMDNTIRVWE--LDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DHTIKV  299 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~--~~~l~-sgs~Dg~V~iwd--~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~i~v  299 (394)
                                 ....|+  ++.|+ +.+.++...||.  +.+++ ...+..+........|+  ++.|+..+. ++...+
T Consensus       243 -----------~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I  310 (427)
T PRK02889        243 -----------SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI  310 (427)
T ss_pred             -----------cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence                       334554  44444 556677766664  44443 45555555556667787  677776554 566777


Q ss_pred             EEeC--CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEECCCCceeEEEecCCcEEEEEECCCC-
Q 016134          300 WFAT--GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYELPSFMERGRIFSKHEVRVIEIGPDK-  373 (394)
Q Consensus       300 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-  373 (394)
                      |.+.  .+. ...+........    ...|+|+|+ +|+..+.++   .|.+||+.+++... +..........|+||+ 
T Consensus       311 y~~~~~~g~-~~~lt~~g~~~~----~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~  383 (427)
T PRK02889        311 YRMPASGGA-AQRVTFTGSYNT----SPRISPDGK-LLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGR  383 (427)
T ss_pred             EEEECCCCc-eEEEecCCCCcC----ceEECCCCC-EEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCC
Confidence            7654  332 222221111111    234799999 565555443   69999998876543 3333345678999999 


Q ss_pred             EEEEEe-CCCe
Q 016134          374 LFFTGD-GAGM  383 (394)
Q Consensus       374 ~l~tgs-~Dg~  383 (394)
                      .|+..+ ..|.
T Consensus       384 ~l~~~~~~~g~  394 (427)
T PRK02889        384 YILYATQQGGR  394 (427)
T ss_pred             EEEEEEecCCC
Confidence            555544 4443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.5e-09  Score=98.42  Aligned_cols=197  Identities=10%  Similarity=0.153  Sum_probs=137.9

Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe---cC
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GR  245 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~---~~  245 (394)
                      ..-+++|..++..  ...|++|-.+|.  +|..+.+...     ..+..-++..             ..+..+.-   .+
T Consensus       102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~h-----ss~l~~la~g-------------~g~~~~r~~~~~p  161 (412)
T KOG3881|consen  102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLH-----SSKLIKLATG-------------PGLYDVRQTDTDP  161 (412)
T ss_pred             ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccc-----cccceeeecC-------------CceeeeccCCCCC
Confidence            4456677776653  346777777777  5887744321     1111111111             11222222   25


Q ss_pred             CeEEEEeCC--CeEEEEeCCCCceeEEEcCCC---------CCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCc-eee
Q 016134          246 SRLCSGSMD--NTIRVWELDTLEPVMTLNDHT---------DAPMSLLCW----DQFLLSCSLDHTIKVWFATGRG-NLE  309 (394)
Q Consensus       246 ~~l~sgs~D--g~V~iwd~~~~~~~~~~~~h~---------~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~-~~~  309 (394)
                      ..+++|+..  ..++|||++..+.+.+-+.-.         -.++++.|-    ...|+++..-+.|++||.+.++ ++.
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            678889999  899999999876554433321         245677776    3589999999999999998664 444


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ec-CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FS-KHEVRVIEIGPDK-LFFTGDGAGMLGV  386 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~v  386 (394)
                      .+.........+.+    .|.++ ++.+|..-+.+..||++.++..... .. .+.|++|..+|.. +|++++-|..|||
T Consensus       242 ~fd~~E~~is~~~l----~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  242 QFDFLENPISSTGL----TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             EeccccCcceeeee----cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence            44444444455554    78888 8999999999999999999888774 33 7789999999998 9999999999999


Q ss_pred             EeCCCC
Q 016134          387 WKLLAK  392 (394)
Q Consensus       387 Wd~~~~  392 (394)
                      +|+++.
T Consensus       317 hD~ktr  322 (412)
T KOG3881|consen  317 HDIKTR  322 (412)
T ss_pred             eecccc
Confidence            999873

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=6.7e-09  Score=101.31  Aligned_cols=211  Identities=11%  Similarity=0.005  Sum_probs=125.6

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEE-eCCCc----eeec
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSG-SRDGT----AWNI  201 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~----vWd~  201 (394)
                      ..+.... |+|++..++-.... +....|.+|++.++. . ..+....+.+..++|+|||+.|+.. +.++.    +||+
T Consensus       199 ~~~~~p~-wSPDG~~la~~s~~-~g~~~i~i~dl~~G~-~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        199 QPLMSPA-WSPDGSKLAYVTFE-SGRSALVIQTLANGA-V-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CceeeeE-EcCCCCEEEEEEec-CCCcEEEEEECCCCC-e-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            3556666 99999998855432 234579999997663 2 2222233345568999999988855 44554    5788


Q ss_pred             CCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCC
Q 016134          202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DN--TIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       202 ~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      ++++...+.....                      .+....|+  ++.|+..+. ++  .|.++|+.+++. ..+..+..
T Consensus       275 ~tg~~~~lt~~~~----------------------~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~  331 (429)
T PRK03629        275 ASGQIRQVTDGRS----------------------NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGS  331 (429)
T ss_pred             CCCCEEEccCCCC----------------------CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCC
Confidence            8877655433322                      23344554  455555554 34  344557766554 33333334


Q ss_pred             CcEEEEEc--CCEEEEEeCC---CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe---EEEEE
Q 016134          277 APMSLLCW--DQFLLSCSLD---HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT---VHLYE  348 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~---I~iwd  348 (394)
                      ......|+  +++|+..+.+   ..|.+||+.+++.. .+... ...    ....|+|||+ +|+..+.++.   +.+++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~----~~p~~SpDG~-~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLD----ETPSIAPNGT-MVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCC----CCceECCCCC-EEEEEEcCCCceEEEEEE
Confidence            44556666  7777776543   35888998776533 22211 111    1334799999 6666666654   67777


Q ss_pred             CCCCceeEEEec-CCcEEEEEECCC
Q 016134          349 LPSFMERGRIFS-KHEVRVIEIGPD  372 (394)
Q Consensus       349 ~~~~~~~~~~~~-~~~v~~l~~sp~  372 (394)
                      +. +.....+.. ...+...+|+|-
T Consensus       405 ~~-G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        405 TD-GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CC-CCCeEECccCCCCcCCcccCCC
Confidence            74 444444443 566888888873

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.4e-09  Score=98.48  Aligned_cols=201  Identities=12%  Similarity=0.121  Sum_probs=138.9

Q ss_pred             CeEEEEEcCCCc---eEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc----eeecCCCcEEE-ecCCCCcEEEEEEcC
Q 016134          153 RFLHSWFCGEGL---TMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT----AWNIESSAEFS-LDGPVGEVYSMVVAN  223 (394)
Q Consensus       153 ~~i~iWd~~~~~---~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~----vWd~~~~~~~~-~~~~~~~v~~l~~~~  223 (394)
                      |.+.+|..+.+.   .++..+..+ ..+..|.-.+.... +++|+....    |||++..+.+- -......-..|    
T Consensus       125 G~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L----  199 (412)
T KOG3881|consen  125 GNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL----  199 (412)
T ss_pred             CcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc----
Confidence            389999887331   334444433 45666666665554 455777743    79999885441 11111000000    


Q ss_pred             CEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCc
Q 016134          224 EMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHT  296 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~  296 (394)
                               .-.-.++++.|-    ...|++++.-+.||+||.+.+ +++.+|.--..+++++...  +++++++..-+.
T Consensus       200 ---------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~  270 (412)
T KOG3881|consen  200 ---------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ  270 (412)
T ss_pred             ---------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence                     011234455663    357999999999999999864 4788877667788877766  899999999999


Q ss_pred             EEEEEeCCCceeeE-eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCC
Q 016134          297 IKVWFATGRGNLEA-AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD  372 (394)
Q Consensus       297 i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~  372 (394)
                      +..||++.++.... +......+..+..    +|... +|++++.|+.|||+|+.+.+++........+++|-+.++
T Consensus       271 l~~FD~r~~kl~g~~~kg~tGsirsih~----hp~~~-~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  271 LAKFDLRGGKLLGCGLKGITGSIRSIHC----HPTHP-VLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             hheecccCceeeccccCCccCCcceEEE----cCCCc-eEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            99999999877666 4444444444433    78877 999999999999999999888777777778888887654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.18  E-value=2.7e-10  Score=106.82  Aligned_cols=111  Identities=10%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCce
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      .|.+.|.+-.|+  |.-|+++++||.|++|. ++|.+..++.....+|.|++|.   .+.+++.+  +.+.+=.+.....
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k  178 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK  178 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc
Confidence            688999999997  67799999999999998 4566666666667889999998   34444433  4566666665555


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      +.....|..    +.+++.|++... ++++|++|-..+|||...
T Consensus       179 ~i~WkAHDG----iiL~~~W~~~s~-lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  179 IIRWRAHDG----LVLSLSWSTQSN-IIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             eeEEeccCc----EEEEeecCcccc-ceeecCCceeEEeecccC
Confidence            556665553    334556788888 999999999999999754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=2.3e-10  Score=114.86  Aligned_cols=183  Identities=20%  Similarity=0.251  Sum_probs=138.5

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc----ceeeeccccccccccCCCeecCCCCCeEEEE
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS----TSKKTTLKNVCCHWLLGNCVRGDECRFLHSW  158 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~----~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iW  158 (394)
                      +..+|+....++.+-+|+......-..            .....+    ...-+. +++...+++.+.+.+    .|.+|
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~------------i~~~er~~l~~~~~~g-~s~~~~~i~~gsv~~----~iivW  160 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSK------------IQSDERCTLYSSLIIG-DSAEELYIASGSVFG----EIIVW  160 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehh------------cCCCceEEEEeEEEEe-ccCcEEEEEeccccc----cEEEE
Confidence            666777777788888888776553210            111111    122222 667777888777777    89999


Q ss_pred             EcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCC
Q 016134          159 FCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTR  236 (394)
Q Consensus       159 d~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~  236 (394)
                      +......+. .+.||.+.|.++.|+-||++++|.|.|.+  +|++++.+...         +..|           +|+.
T Consensus       161 ~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---------~~~f-----------gHsa  219 (967)
T KOG0974|consen  161 KPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---------CTGF-----------GHSA  219 (967)
T ss_pred             eccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------cccc-----------cccc
Confidence            997332333 68999999999999999999999999999  69999988653         1112           8999


Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-CcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-APMSLLCW--DQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~  304 (394)
                      .|+.+.|.++++++++.|.+.++|+.. ++.+..+++|.. .|..++..  ...++|++.|+.+++||+..
T Consensus       220 Rvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  220 RVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEEEeccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999998899999999999999765 455557777764 57888887  45788999999999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=9.7e-09  Score=100.45  Aligned_cols=232  Identities=12%  Similarity=-0.040  Sum_probs=135.6

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG  172 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~  172 (394)
                      ...+.+||.+..+...             ...+...+.... |+|++..++.....+ ....|.+||+.++..  ..+..
T Consensus       183 ~~~l~i~D~~g~~~~~-------------lt~~~~~v~~p~-wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~--~~l~~  245 (433)
T PRK04922        183 RYALQVADSDGYNPQT-------------ILRSAEPILSPA-WSPDGKKLAYVSFER-GRSAIYVQDLATGQR--ELVAS  245 (433)
T ss_pred             eEEEEEECCCCCCceE-------------eecCCCcccccc-CCCCCCEEEEEecCC-CCcEEEEEECCCCCE--EEecc
Confidence            3467888886544221             122233456666 999999888655433 345799999977632  23334


Q ss_pred             cCCCeEEEEecCCCCEEE-EEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--C
Q 016134          173 HEKAVSGIALPLRSDKLF-SGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--R  245 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~  245 (394)
                      +.+...+.+|+|||+.|+ +.+.++.    +||+.+++...+..+..                      ......|+  +
T Consensus       246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~----------------------~~~~~~~spDG  303 (433)
T PRK04922        246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG----------------------IDTEPTWAPDG  303 (433)
T ss_pred             CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC----------------------CccceEECCCC
Confidence            455566889999998775 5566664    58888877655433322                      22334554  4


Q ss_pred             CeEEEEe-CCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC---cEEEEEeCCCceeeEeecccCC
Q 016134          246 SRLCSGS-MDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH---TIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       246 ~~l~sgs-~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      +.|+..+ .++.  |.++|+.+++... +..+......+.|+  ++.|+..+.++   .|.+||+.+++.. .+. +...
T Consensus       304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~  380 (433)
T PRK04922        304 KSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSL  380 (433)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCC
Confidence            5555544 3443  6667777665432 32233334456776  77877765433   6999999776543 222 2111


Q ss_pred             cceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEEec-CCcEEEEEECC
Q 016134          318 NGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRIFS-KHEVRVIEIGP  371 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp  371 (394)
                      ..    ...|+|+|+.++++...  ...|.++++... ....+.. ...+...+|+|
T Consensus       381 ~~----~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        381 DE----SPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CC----CceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence            11    23479999944444433  245778888543 3444433 45677778876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.15  E-value=1.5e-10  Score=106.89  Aligned_cols=230  Identities=13%  Similarity=0.150  Sum_probs=151.1

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCC
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPV  213 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~  213 (394)
                      +.-.|.++.-+    +.-|.|-.+|..+. ++..++. -...|.++.|-.+.+++|.+-..-. |||-.. ..+......
T Consensus       137 ytrnGrhlllg----GrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-tElHClk~~  209 (545)
T KOG1272|consen  137 YTRNGRHLLLG----GRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-TELHCLKRH  209 (545)
T ss_pred             ecCCccEEEec----CCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCC-cEEeehhhc
Confidence            33344554433    33447778888776 5555543 3567888888887777777765554 576543 334333444


Q ss_pred             CcEEEEEEcCC-EEEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          214 GEVYSMVVANE-MLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       214 ~~v~~l~~~~~-~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      ..|..+.|-|. +|+++..+                   .-.+.+..++-+  +..+-+|...|+|.+|.....+++..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            57888888887 44444333                   122334344444  456888999999999999999999999


Q ss_pred             cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       272 ~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      ..|.++|.++++.  |.+++|.+.|..++|||+++-..+..+.. ..+...+++    |..|  +||. +....|.||.-
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~----Sqkg--lLA~-~~G~~v~iw~d  361 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL----SQKG--LLAL-SYGDHVQIWKD  361 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccc----cccc--ceee-ecCCeeeeehh
Confidence            9999999999999  89999999999999999998876666655 333444444    4444  4554 45568999952


Q ss_pred             C-CC---ceeEEEec--CCcEEEEEECCCC-EEEEEe
Q 016134          350 P-SF---MERGRIFS--KHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       350 ~-~~---~~~~~~~~--~~~v~~l~~sp~~-~l~tgs  379 (394)
                      . .+   .....+.+  ...|..+.|.|-. .|-.|.
T Consensus       362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH  398 (545)
T KOG1272|consen  362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH  398 (545)
T ss_pred             hhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence            2 21   11112222  4579999999854 444433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=2.1e-09  Score=108.16  Aligned_cols=196  Identities=17%  Similarity=0.207  Sum_probs=135.9

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEE
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSG  251 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sg  251 (394)
                      .+.|..-.+..+.++++.+..+..  +||...+.......+.....        +.       ...+....+..-++++|
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~--------l~-------~~~~~g~s~~~~~i~~g  151 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT--------LY-------SSLIIGDSAEELYIASG  151 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE--------EE-------eEEEEeccCcEEEEEec
Confidence            344555556667788888887777  46666555543222211110        00       00111111223468999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceee-EeecccCCcceEEEEeeEC
Q 016134          252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE-AAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~s  328 (394)
                      +--+.|.+|+....+.-..+.+|.+.|.++.++  +.+++++|+|+++|+|++.+.+... ....|.    ...+..++.
T Consensus       152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs----aRvw~~~~~  227 (967)
T KOG0974|consen  152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS----ARVWACCFL  227 (967)
T ss_pred             cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc----ceeEEEEec
Confidence            999999999987433333678999999999996  8999999999999999999877665 333333    334455567


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |+   .+++++.|.+.++|+...... ..+..  ...|+.++..++. .++|++.|+.+++|++...
T Consensus       228 ~n---~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  228 PN---RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cc---eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            77   699999999999996654333 33333  5569999999988 9999999999999998654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.8e-08  Score=98.66  Aligned_cols=233  Identities=10%  Similarity=-0.002  Sum_probs=139.0

Q ss_pred             CcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEeccc
Q 016134           94 RIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGH  173 (394)
Q Consensus        94 ~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h  173 (394)
                      +.+.++|.++.+..             ....+...+.... |+|++.+|+-..... .+..|++||+.++..  ..+..+
T Consensus       182 ~~l~~~d~dg~~~~-------------~lt~~~~~v~~p~-wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~--~~l~~~  244 (435)
T PRK05137        182 KRLAIMDQDGANVR-------------YLTDGSSLVLTPR-FSPNRQEITYMSYAN-GRPRVYLLDLETGQR--ELVGNF  244 (435)
T ss_pred             eEEEEECCCCCCcE-------------EEecCCCCeEeeE-ECCCCCEEEEEEecC-CCCEEEEEECCCCcE--EEeecC
Confidence            46667777654432             1223444677777 999999887665433 346899999987632  345566


Q ss_pred             CCCeEEEEecCCCCEEE-EEeCCCc--e--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeE
Q 016134          174 EKAVSGIALPLRSDKLF-SGSRDGT--A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRL  248 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~-sgs~Dg~--v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l  248 (394)
                      .+.+...+|+|||+.|+ +.+.++.  |  ||+++++...+..+........|+|+                    ++.|
T Consensus       245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spD--------------------G~~i  304 (435)
T PRK05137        245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPD--------------------GSQI  304 (435)
T ss_pred             CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCC--------------------CCEE
Confidence            77888999999998775 5666665  4  68877776555433322222333322                    4555


Q ss_pred             EEEeC-C--CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEeCCCceeeEeecccCCcce
Q 016134          249 CSGSM-D--NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD---HTIKVWFATGRGNLEAAYTHKEDNGV  320 (394)
Q Consensus       249 ~sgs~-D--g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~  320 (394)
                      +..+. +  ..|.++|+.+++. +.+..+...+....|+  ++.|+..+.+   ..|.+||+..+. ...+. ...... 
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~-  380 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVE-  380 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCC-
Confidence            54442 2  3688888876554 3343344455666676  7787776643   368888875443 22222 111112 


Q ss_pred             EEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeEEEecCCcEEEEEECC
Q 016134          321 LALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERGRIFSKHEVRVIEIGP  371 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp  371 (394)
                         ...|+|||+.++++....     ..|.++|+..+.. ..+.....+...+|+|
T Consensus       381 ---~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp  432 (435)
T PRK05137        381 ---GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSP  432 (435)
T ss_pred             ---CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCC
Confidence               234699999444444332     3588888876544 3444444567777876

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.13  E-value=3.5e-09  Score=91.38  Aligned_cols=159  Identities=19%  Similarity=0.264  Sum_probs=106.2

Q ss_pred             CCCeEEEEecC-CC-CE-EEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--C
Q 016134          174 EKAVSGIALPL-RS-DK-LFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--R  245 (394)
Q Consensus       174 ~~~V~~l~~s~-~~-~~-l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~  245 (394)
                      .+.+.+..+.. ++ .. |+.|-++|.  +||+.++... .+.....-+.            ....|..+|.++.|.  -
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~------------~~ash~qpvlsldyas~~  217 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES------------PNASHKQPVLSLDYASSC  217 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc------------chhhccCcceeeeechhh
Confidence            45666666533 22 23 444555565  5998887433 2221111111            111788999999987  3


Q ss_pred             CeEEEEeCCCeEEEEeCCCC--ce----eEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134          246 SRLCSGSMDNTIRVWELDTL--EP----VMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG  319 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~--~~----~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  319 (394)
                      +.=++|+.+..+..|.+...  .+    ..+++...-.=..+..+++.+|+++.|++||||..++..++..+..|.....
T Consensus       218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN  297 (323)
T ss_pred             cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence            45677888888999988642  22    2233322222244555589999999999999999999999999988885444


Q ss_pred             eEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          320 VLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      .+    +|+|+.. ++|.++.|.+|.+|++
T Consensus       298 ~v----Afspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AV----AFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             EE----EeCCCCc-hhhhccCCceEEeeec
Confidence            33    3699977 9999999999999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.11  E-value=1.3e-08  Score=88.08  Aligned_cols=126  Identities=12%  Similarity=0.156  Sum_probs=85.9

Q ss_pred             eEEEEeCCC-CceeEEEcC-CCCCcEEEEEc--CCEEEEE--eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134          256 TIRVWELDT-LEPVMTLND-HTDAPMSLLCW--DQFLLSC--SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       256 ~V~iwd~~~-~~~~~~~~~-h~~~v~~l~~~--~~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      ...||.++. ...+..+.. ..++|.+++|+  ++.|++.  ..+..|.+||++ .+.+..+..  ...  .  .+.|+|
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~--n--~i~wsP  110 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPR--N--TISWSP  110 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCc--e--EEEECC
Confidence            345555532 233444432 34579999999  6665444  457899999996 444444432  112  2  234799


Q ss_pred             CCCcEEEEEeC---CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeC------CCeEEEEeCC
Q 016134          330 DGKPVLICACN---DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDG------AGMLGVWKLL  390 (394)
Q Consensus       330 ~g~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~------Dg~I~vWd~~  390 (394)
                      +|+ +|++++.   .|.|.+||+++.+.+....+. .++.++|+|+| +|+++..      |+.++||++.
T Consensus       111 ~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  111 DGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCC-EEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            999 6766653   467999999988887776553 57899999999 7777764      7889999975

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=5.1e-10  Score=103.94  Aligned_cols=205  Identities=18%  Similarity=0.156  Sum_probs=148.7

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL  241 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l  241 (394)
                      +.+...|..|.+.|+.|.|+..|..|+|++.|..  +||+..+....-                    ...+|...|...
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--------------------f~SGH~~NvfQa  191 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--------------------FESGHCNNVFQA  191 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--------------------cccccccchhhh
Confidence            3566778899999999999999999999999998  599998876521                    111666666665


Q ss_pred             Eec----CCeEEEEeCCCeEEEEeCCC-Cce--eEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134          242 AVG----RSRLCSGSMDNTIRVWELDT-LEP--VMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       242 ~~~----~~~l~sgs~Dg~V~iwd~~~-~~~--~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~  311 (394)
                      .|-    ...+++++.||.|++=.+.. +.+  ...+..|.++|.-++..   ...|.+++.|+.++-+|++.......+
T Consensus       192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~  271 (559)
T KOG1334|consen  192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF  271 (559)
T ss_pred             hccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence            553    35699999999999987643 332  34456699999888877   578999999999999999987655544


Q ss_pred             eccc--CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee------EEEec-------CCcEEEEEECCCC-EE
Q 016134          312 YTHK--EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER------GRIFS-------KHEVRVIEIGPDK-LF  375 (394)
Q Consensus       312 ~~~~--~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~------~~~~~-------~~~v~~l~~sp~~-~l  375 (394)
                      ....  ....+.-...+.+|-..+.+++++.|..+++||.+.....      .++..       .-.|++++++.++ -|
T Consensus       272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence            4322  2211222333457877778999999999999998865332      11111       2359999999877 55


Q ss_pred             EEEeCCCeEEEEe
Q 016134          376 FTGDGAGMLGVWK  388 (394)
Q Consensus       376 ~tgs~Dg~I~vWd  388 (394)
                      +++-.|-.|+++.
T Consensus       352 LaSYnDe~IYLF~  364 (559)
T KOG1334|consen  352 LASYNDEDIYLFN  364 (559)
T ss_pred             eeeecccceEEec
Confidence            5556677788884

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.10  E-value=2.6e-08  Score=94.78  Aligned_cols=232  Identities=14%  Similarity=0.150  Sum_probs=120.8

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFA  228 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~  228 (394)
                      +.|.|.|..+. +.+.++......-..+.|+||+++++.++.|+.  ++|+.+.+.+...........++++++  ++++
T Consensus        16 ~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v   94 (369)
T PF02239_consen   16 GSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV   94 (369)
T ss_dssp             TEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred             CEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence            48999998876 777888765544455789999999999999988  599988887754444555677777776  5555


Q ss_pred             EecC--------C------------------CCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCcee--EEEcCCCCC
Q 016134          229 GAQD--------G------------------HTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPV--MTLNDHTDA  277 (394)
Q Consensus       229 ~~~~--------~------------------h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~--~~~~~h~~~  277 (394)
                      +...        .                  ....+.+|..+  ...++..-. -+.|-+-|....+.+  ..+. ....
T Consensus        95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~  173 (369)
T PF02239_consen   95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRF  173 (369)
T ss_dssp             EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TT
T ss_pred             EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-cccc
Confidence            5433        0                  11122333222  222222222 245555554433211  2222 2233


Q ss_pred             cEEEEEc--CCEEEE-EeCCCcEEEEEeC---------------------------------------------------
Q 016134          278 PMSLLCW--DQFLLS-CSLDHTIKVWFAT---------------------------------------------------  303 (394)
Q Consensus       278 v~~l~~~--~~~l~s-~s~Dg~i~vwd~~---------------------------------------------------  303 (394)
                      .....|+  +++++. ...++.|-++|..                                                   
T Consensus       174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v  253 (369)
T PF02239_consen  174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV  253 (369)
T ss_dssp             EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred             ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence            3344444  443322 2233344444433                                                   


Q ss_pred             ----CCceeeEeecccCCcceEEEEeeECCCCCcEEEEE----eCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC
Q 016134          304 ----GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA----CNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK  373 (394)
Q Consensus       304 ----~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~  373 (394)
                          ..+.++.+......     +....+|+++ +|.+.    ...++|.++|.++.+....+..  ...+..+.|+++|
T Consensus       254 ~d~~~wkvv~~I~~~G~g-----lFi~thP~s~-~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG  327 (369)
T PF02239_consen  254 HDDYAWKVVKTIPTQGGG-----LFIKTHPDSR-YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG  327 (369)
T ss_dssp             STTTBTSEEEEEE-SSSS-------EE--TT-S-EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred             chhhcCeEEEEEECCCCc-----ceeecCCCCc-cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence                33333333332111     1123489998 55554    5568999999999977777654  3359999999999


Q ss_pred             -E-EEEEe-CCCeEEEEeCCCC
Q 016134          374 -L-FFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       374 -~-l~tgs-~Dg~I~vWd~~~~  392 (394)
                       . .++.- .++.|.+||..+-
T Consensus       328 ~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  328 KEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             SEEEEEEE--TTEEEEEETTTT
T ss_pred             CEEEEEEecCCCEEEEEECCCc
Confidence             3 33333 3337999998763

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=1.1e-08  Score=96.90  Aligned_cols=223  Identities=9%  Similarity=0.070  Sum_probs=147.4

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEE-EEcCC--EEEEEecC------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSM-VVANE--MLFAGAQD------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l-~~~~~--~l~~~~~~------  232 (394)
                      ++++.| .|...-+.|..+|||+|+++.+.-.-   +||+......-.......+..+ -.+.|  .++.-..|      
T Consensus        43 eLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   43 ELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             HHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            344444 57788899999999999876665443   6888765543222222233222 22222  11111111      


Q ss_pred             ----C-CC----CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEE
Q 016134          233 ----G-HT----RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKV  299 (394)
Q Consensus       233 ----~-h~----~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~v  299 (394)
                          - +.    ..-.+++++  .--|+.++....|.-++++.|..+..|....+.++++..+  ..+|++|+.+|.|-.
T Consensus       122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF  201 (703)
T ss_pred             hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence                1 11    122334444  1224455555678888999999999998888899999988  678999999999999


Q ss_pred             EEeCCCceeeEeecccC---------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEE
Q 016134          300 WFATGRGNLEAAYTHKE---------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIE  368 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~  368 (394)
                      ||.++...+..+.....         ...+.++  .|+.+|- -+++|..+|.|.|||++..+++....+  .-+|..+.
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal--~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL--KFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEE--EecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            99998766555443221         1123333  4677776 799999999999999999988877766  55799999


Q ss_pred             ECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134          369 IGPDK---LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       369 ~sp~~---~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |.+.+   .|++. ....++|||-.+.
T Consensus       279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  279 WQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             ccccCCCceEEec-chHHhhhcccccC
Confidence            98864   55544 4567899996654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.09  E-value=2.1e-08  Score=86.67  Aligned_cols=112  Identities=15%  Similarity=0.255  Sum_probs=79.5

Q ss_pred             CCCEEEEEec--CCeEE--EEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEeCCC
Q 016134          235 TRPVTCLAVG--RSRLC--SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD---HTIKVWFATGR  305 (394)
Q Consensus       235 ~~~V~~l~~~--~~~l~--sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~  305 (394)
                      ..+|.+++|+  ++.|+  .|..+..|.+||++ .+.+.++.  ...+..+.|+  |++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3458888887  45543  34567899999997 67777765  4677889998  8899998754   66999999976


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEEe------CCCeEEEEECCCCceeEE
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC------NDNTVHLYELPSFMERGR  357 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs------~dg~I~iwd~~~~~~~~~  357 (394)
                      +.+.....    ..  +..+.|+|+|+ +|+++.      .|+.++||+.. |+++..
T Consensus       136 ~~i~~~~~----~~--~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  136 KKISTFEH----SD--ATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEeecccc----Cc--EEEEEEcCCCC-EEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            66544331    12  23446899999 666554      38899999985 555444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.07  E-value=1.4e-08  Score=90.28  Aligned_cols=235  Identities=17%  Similarity=0.193  Sum_probs=142.0

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-EEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-MLF  227 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~  227 (394)
                      ++.|.+|++... +-...+..-...+.+++|+|||+.|+.-+ .|-.  ||.+.+.+...+.-....+..++|+++ .++
T Consensus        70 ~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen   70 DPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             cceEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence            448999999876 55666677788999999999996665544 4444  799999888877777777788888888 222


Q ss_pred             E-Ee-cC----------------------------------------------------CCCCCEEEEEec--CCeEEEE
Q 016134          228 A-GA-QD----------------------------------------------------GHTRPVTCLAVG--RSRLCSG  251 (394)
Q Consensus       228 ~-~~-~~----------------------------------------------------~h~~~V~~l~~~--~~~l~sg  251 (394)
                      + .+ .|                                                    .-.-.+..++|+  +++|++|
T Consensus       149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavG  228 (447)
T KOG4497|consen  149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVG  228 (447)
T ss_pred             eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEee
Confidence            1 11 12                                                    112345566666  5678888


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCcEEEE----E----c-CCEEEEE----eCCCcEEEEEeCC--------CceeeE
Q 016134          252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLL----C----W-DQFLLSC----SLDHTIKVWFATG--------RGNLEA  310 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~----~----~-~~~l~s~----s~Dg~i~vwd~~~--------~~~~~~  310 (394)
                      +.|+.+||.+--+.+...++- |...+.+-.    +    . -+++..+    -.|-...+|...+        ...+..
T Consensus       229 syD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~  307 (447)
T KOG4497|consen  229 SYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHK  307 (447)
T ss_pred             ccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeec
Confidence            888888887765555544432 222111111    0    0 0000000    0111222232210        111111


Q ss_pred             eec---ccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeE
Q 016134          311 AYT---HKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       311 ~~~---~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      +..   ...+ ..-.-..+|++|.. ++++-.+  -+.+-+||++..+....+...++|....|+|.. .|+.+.....+
T Consensus       308 lkp~tD~pnP-k~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srL  385 (447)
T KOG4497|consen  308 LKPPTDFPNP-KCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRL  385 (447)
T ss_pred             ccCCCCCCCc-ccccceeeecCCce-EEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceE
Confidence            110   0011 11111234689987 7777643  257999999998887778889999999999998 77777767778


Q ss_pred             EEEeCC
Q 016134          385 GVWKLL  390 (394)
Q Consensus       385 ~vWd~~  390 (394)
                      .+|...
T Consensus       386 Y~W~ps  391 (447)
T KOG4497|consen  386 YFWAPS  391 (447)
T ss_pred             EEEcCC
Confidence            999753

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=8.9e-10  Score=115.93  Aligned_cols=202  Identities=14%  Similarity=0.176  Sum_probs=148.3

Q ss_pred             CCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEE
Q 016134          143 LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMV  220 (394)
Q Consensus       143 ~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~  220 (394)
                      .-...+|+.|+.|++|....+.+.+.-..+-...|+.+.|+.+|+.+..+..||.  +|.+......             
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~------------- 2286 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT------------- 2286 (2439)
T ss_pred             CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCccee-------------
Confidence            3445677788899999998775555555555699999999999999999999998  5887632222             


Q ss_pred             EcCCEEEEEecCCCCCCEEEEEecCCeEEEEe---CCCeEEEEeCCC---CceeEEEcCCCCCcEEEEEc--CCEEEEEe
Q 016134          221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS---MDNTIRVWELDT---LEPVMTLNDHTDAPMSLLCW--DQFLLSCS  292 (394)
Q Consensus       221 ~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs---~Dg~V~iwd~~~---~~~~~~~~~h~~~v~~l~~~--~~~l~s~s  292 (394)
                               +...|.....++.|-+..+++++   .++.+.+||.--   ..++.  ..|.+.++++++.  .++|++|+
T Consensus      2287 ---------s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2287 ---------SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             ---------ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC
Confidence                     23367777777777777777765   478999999632   22344  7899999999998  57999999


Q ss_pred             CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCc------E--
Q 016134          293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE------V--  364 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~------v--  364 (394)
                      .+|.|++||++..+....+..         +    + ... ++++|+..|.|+||++.....+.++...+.      .  
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------~----~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g 2420 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------L----D-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIG 2420 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------h----h-hhh-eeeccCcccceEEEEccccchhhcCchhhcccchhhhcC
Confidence            999999999987655544432         2    3 233 899999999999999999877777665321      1  


Q ss_pred             EEEEECCCCEEEEEeCCCe
Q 016134          365 RVIEIGPDKLFFTGDGAGM  383 (394)
Q Consensus       365 ~~l~~sp~~~l~tgs~Dg~  383 (394)
                      ..+.+.+.+.|++++.|++
T Consensus      2421 ~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2421 MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             ceeeeccCceEEEecCCCC
Confidence            2233334447888888874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.06  E-value=8e-10  Score=103.78  Aligned_cols=121  Identities=15%  Similarity=0.202  Sum_probs=96.4

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      .++..+.--++.|+.++|+|||++||+.+.||.  |+|..+.+.+-+                     ....-+...|++
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---------------------mkSYFGGLLCvc  339 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---------------------MKSYFGGLLCVC  339 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---------------------HHhhccceEEEE
Confidence            344444445679999999999999999999999  688887765521                     112335667777


Q ss_pred             ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------C-----------------------------
Q 016134          243 VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------D-----------------------------  285 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~-----------------------------  285 (394)
                      |+  +++|++|++|-.|.||.+...+.+..=++|.+.|..|+|+      .                             
T Consensus       340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~  419 (636)
T KOG2394|consen  340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA  419 (636)
T ss_pred             EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence            76  7899999999999999999999999989999999999986      0                             


Q ss_pred             ---------------CEEEEEeCCCcEEEEEeCCCc
Q 016134          286 ---------------QFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       286 ---------------~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                                     ..|.+.+.|.++.+||+....
T Consensus       420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             CCCcccccccccceEEEeecccccceEEEEecchhh
Confidence                           147788899999999997653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.2e-07  Score=90.96  Aligned_cols=208  Identities=13%  Similarity=0.061  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      .|.++|.... . .+.+..+...+...+|+|||+.|+..+.+..     +||+.+++...+....+.+....|+|+    
T Consensus       180 ~l~~~d~~g~-~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD----  253 (430)
T PRK00178        180 TLQRSDYDGA-R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD----  253 (430)
T ss_pred             EEEEECCCCC-C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC----
Confidence            4677777543 3 3455567788999999999999987765532     578888776554332222222333332    


Q ss_pred             EecCCCCCCEEEEEecCCeEE-EEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEEEE
Q 016134          229 GAQDGHTRPVTCLAVGRSRLC-SGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIKVW  300 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~~~~l~-sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~vw  300 (394)
                                      ++.|+ +.+.++  .|.+||+++++.. .+..+........|+  ++.|+..+. ++  .|.++
T Consensus       254 ----------------G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        254 ----------------GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             ----------------CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence                            44443 344444  6888899887643 455555555667777  666665553 33  57777


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEE
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~t  377 (394)
                      |+.+++....... .....    ...|+|+|+.++++...++  .|.++|+.+++.. .+..........|+||| .|+.
T Consensus       317 d~~~g~~~~lt~~-~~~~~----~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        317 NVNGGRAERVTFV-GNYNA----RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIY  390 (430)
T ss_pred             ECCCCCEEEeecC-CCCcc----ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEE
Confidence            7766554332211 11111    2346999994444443333  5888999887543 23332223356899999 4444


Q ss_pred             -EeCCCe--EEEEeCC
Q 016134          378 -GDGAGM--LGVWKLL  390 (394)
Q Consensus       378 -gs~Dg~--I~vWd~~  390 (394)
                       ...++.  |.++++.
T Consensus       391 ~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        391 ATRQQGRGVLMLVSIN  406 (430)
T ss_pred             EEecCCceEEEEEECC
Confidence             444443  5555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=6.6e-08  Score=94.38  Aligned_cols=212  Identities=12%  Similarity=-0.044  Sum_probs=120.9

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc--eee--c
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT--AWN--I  201 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~--vWd--~  201 (394)
                      ..+.... |+|++.+++-.... +....|.+||+.++. . ..+....+.+...+|+|||+.|+ +.+.++.  ||.  +
T Consensus       196 ~~v~~p~-wSPDG~~la~~s~~-~~~~~I~~~dl~~g~-~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        196 EPIISPA-WSPDGTKLAYVSFE-SKKPVVYVHDLATGR-R-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             CCcccce-EcCCCCEEEEEEcc-CCCcEEEEEECCCCC-E-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            3455666 99999998765543 334579999998773 2 22333445667899999999886 5666765  554  4


Q ss_pred             CCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEe--CCCCceeEEEcCCCC
Q 016134          202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWE--LDTLEPVMTLNDHTD  276 (394)
Q Consensus       202 ~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd--~~~~~~~~~~~~h~~  276 (394)
                      .++....+..+.                      .......|+  ++.|+..+. ++...||.  +.+++.. .+..+..
T Consensus       272 ~~~~~~~lt~~~----------------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~  328 (427)
T PRK02889        272 DGSGLRRLTQSS----------------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGS  328 (427)
T ss_pred             CCCCcEECCCCC----------------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCC
Confidence            444433332222                      122334454  555554443 45556664  4444432 2222222


Q ss_pred             CcEEEEEc--CCEEEEEeCCC---cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEEC
Q 016134          277 APMSLLCW--DQFLLSCSLDH---TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYEL  349 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~  349 (394)
                      ......|+  |++|+..+.++   .|.+||+.+++... +... ...    ....|+|+|+.++++....+.  +.+.++
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~----~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRD----ESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCc----cCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            33345666  78888776554   69999998765433 2211 111    133579999955554444433  555566


Q ss_pred             CCCceeEEEec-CCcEEEEEECCC
Q 016134          350 PSFMERGRIFS-KHEVRVIEIGPD  372 (394)
Q Consensus       350 ~~~~~~~~~~~-~~~v~~l~~sp~  372 (394)
                      . +.....+.. .+.+...+|+|-
T Consensus       403 ~-g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        403 D-GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             C-CCceEEeecCCCCCCCCccCCC
Confidence            3 444444443 456777788873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.99  E-value=3.5e-07  Score=89.09  Aligned_cols=207  Identities=15%  Similarity=0.064  Sum_probs=123.4

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      ....|.++|.... . .+.+..+...+...+|+||+++|+.+..++.     +||+.+++...+....+.+         
T Consensus       168 ~~~~l~~~d~~g~-~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~---------  236 (417)
T TIGR02800       168 RRYELQVADYDGA-N-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMN---------  236 (417)
T ss_pred             CcceEEEEcCCCC-C-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCc---------
Confidence            3446888887533 2 3455567778999999999999998876542     6888887655443332222         


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEE-EEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLC-SGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--  295 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~-sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--  295 (394)
                                   .++.|+  ++.|+ +.+.++  .|.+||+.+++. ..+..+........|+  ++.|+..+. ++  
T Consensus       237 -------------~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~  302 (417)
T TIGR02800       237 -------------GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSP  302 (417)
T ss_pred             -------------cceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCc
Confidence                         334454  34343 444443  588899987654 3444454444556666  677766654 33  


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEECCCCceeEEEecCCcEEEEEECCC
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYELPSFMERGRIFSKHEVRVIEIGPD  372 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~  372 (394)
                      .|.++|+..++.. .+........    ...|+|+++ +|+..+.++   .|.+||+.++.. ..+..........|+|+
T Consensus       303 ~iy~~d~~~~~~~-~l~~~~~~~~----~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spd  375 (417)
T TIGR02800       303 QIYMMDADGGEVR-RLTFRGGYNA----SPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPN  375 (417)
T ss_pred             eEEEEECCCCCEE-EeecCCCCcc----CeEECCCCC-EEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCC
Confidence            5777787665433 2222221111    234699999 666666555   789999887543 23333333456689999


Q ss_pred             C-EEEEEeCCC---eEEEEeC
Q 016134          373 K-LFFTGDGAG---MLGVWKL  389 (394)
Q Consensus       373 ~-~l~tgs~Dg---~I~vWd~  389 (394)
                      + .|+..+.++   .+.+.+.
T Consensus       376 g~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       376 GRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CCEEEEEEeCCCcEEEEEEEC
Confidence            9 565555443   3445443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.8e-07  Score=88.71  Aligned_cols=285  Identities=11%  Similarity=0.077  Sum_probs=171.3

Q ss_pred             cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCe---ecCCC---CCe
Q 016134           81 LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNC---VRGDE---CRF  154 (394)
Q Consensus        81 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~---~~g~~---~~~  154 (394)
                      +++++++...+.+..++|.+..+....             +..-.. .+..+. ++|++.|+.+--   ..++.   .--
T Consensus        42 ~S~~G~lfA~~~~~~v~i~~~~~~~~~-------------lt~~~~-~~~~L~-fSP~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   42 YSNNGRLFAYSDNQVVKVFEIATLKVV-------------LCVELK-KTYDLL-FSPKGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             EcCCCcEEEEEcCCeEEEEEccCCcEE-------------EEeccc-eeeeee-ecccccccccccccccccCCCCCCCc
Confidence            557777777788888888887766421             111111 455566 999999997632   12211   235


Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCceeecCCCcEEEecCCCCcEEEEEEcCC----EEEEE
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGTAWNIESSAEFSLDGPVGEVYSMVVANE----MLFAG  229 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~  229 (394)
                      +.+|+++++ .....++.-...=+++.|+.|..+.+=-. .+=.++++.+-+.....-+...+..+.++|.    .+++-
T Consensus       107 ~~v~~vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy  185 (566)
T KOG2315|consen  107 VLVYNVETG-VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY  185 (566)
T ss_pred             eeeeeeccc-eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence            789999885 44444433222226889988876544222 2222677776555444445566777777665    33322


Q ss_pred             ecC-----------------CC---------CCCEEEEEec--C-CeEE--EEeCCC---------eEEEEeCCCCceeE
Q 016134          230 AQD-----------------GH---------TRPVTCLAVG--R-SRLC--SGSMDN---------TIRVWELDTLEPVM  269 (394)
Q Consensus       230 ~~~-----------------~h---------~~~V~~l~~~--~-~~l~--sgs~Dg---------~V~iwd~~~~~~~~  269 (394)
                      ...                 .|         ...=..+.|+  + .+|+  +..-|.         ++++.+++...+..
T Consensus       186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V  265 (566)
T KOG2315|consen  186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV  265 (566)
T ss_pred             ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence            211                 01         1111234454  2 2333  332333         68888887445555


Q ss_pred             EEcCCCCCcEEEEEc--CCEEEE--EeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE--eCCCe
Q 016134          270 TLNDHTDAPMSLLCW--DQFLLS--CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA--CNDNT  343 (394)
Q Consensus       270 ~~~~h~~~v~~l~~~--~~~l~s--~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg--s~dg~  343 (394)
                      .+. -.++|.++.|+  +..+++  |-.--++.|||++. ..+..+..  .+.. ..   .|+|.|..++++|  ..-|.
T Consensus       266 ~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~e--gpRN-~~---~fnp~g~ii~lAGFGNL~G~  337 (566)
T KOG2315|consen  266 PLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPE--GPRN-TA---FFNPHGNIILLAGFGNLPGD  337 (566)
T ss_pred             ecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCC--CCcc-ce---EECCCCCEEEEeecCCCCCc
Confidence            544 46899999999  544444  34567899999874 44443332  2222 22   3799999444444  23588


Q ss_pred             EEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeC------CCeEEEEeCC
Q 016134          344 VHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDG------AGMLGVWKLL  390 (394)
Q Consensus       344 I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~------Dg~I~vWd~~  390 (394)
                      |.|||+.+.+++..+.. ..-+-++|+||| +|+|+..      |+.++||++.
T Consensus       338 mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  338 MEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             eEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999877777665 345667999999 7777764      7889999875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.95  E-value=8.4e-07  Score=85.27  Aligned_cols=135  Identities=10%  Similarity=-0.008  Sum_probs=93.6

Q ss_pred             cCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cceEE
Q 016134          244 GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGVLA  322 (394)
Q Consensus       244 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~  322 (394)
                      .++.++.++.++.+..||.++++.+.....  .........+..++.++.|+.|..+|..+++.+-........ .....
T Consensus       240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~  317 (377)
T TIGR03300       240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA  317 (377)
T ss_pred             ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence            356788888999999999999988776652  223344455788888899999999999888765433211111 11111


Q ss_pred             EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-cEEEEEECCCCEEEEEeCCCeEEEE
Q 016134          323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-EVRVIEIGPDKLFFTGDGAGMLGVW  387 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~v~~l~~sp~~~l~tgs~Dg~I~vW  387 (394)
                      +      .+. .|++++.+|.|+++|..+++.+..+.... .+..--...++.|+.++.||.|..|
T Consensus       318 i------~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       318 V------VGG-YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             E------ECC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence            1      244 67788999999999999999988776533 3332222234578889999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.94  E-value=4.4e-09  Score=110.88  Aligned_cols=188  Identities=16%  Similarity=0.247  Sum_probs=144.1

Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CC
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RS  246 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~  246 (394)
                      +-|-..|.++.=+|...+.+||+.||.  +|.+..++.+......                   +. ..|+.+.|+  |+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------g~-s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------GN-SRVTRSRFNHQGN 2264 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------Cc-chhhhhhhcccCC
Confidence            345567888888899999999999999  5888777765322211                   23 667777776  88


Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEe---CCCcEEEEEeCCCcee-eEeecccCCcceEE
Q 016134          247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS---LDHTIKVWFATGRGNL-EAAYTHKEDNGVLA  322 (394)
Q Consensus       247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~  322 (394)
                      .+..+..||.+.+|... .++....+.|......+.|-+..+++++   .++.+.+||....... .....|.+..++++
T Consensus      2265 k~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred             ceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence            89999999999999987 6778888899999999999998888876   4789999996543222 22244555444443


Q ss_pred             EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                          +-|..+ +|++|+.+|.|++||++..+++..+..        +....+|++|+..|.|+||++..-
T Consensus      2344 ----~~P~~q-llisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2344 ----YAPKHQ-LLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             ----EcCcce-EEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEcccc
Confidence                578888 999999999999999998777666544        442339999999999999998753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.91  E-value=4.7e-07  Score=88.20  Aligned_cols=189  Identities=14%  Similarity=0.024  Sum_probs=113.1

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc----eeecC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT----AWNIE  202 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~  202 (394)
                      .+.... |+|++.+++.....+ ....|++||+.++. . ..+..+...+.+++|+||++.|+ +.+.++.    +||+.
T Consensus       191 ~~~~p~-~Spdg~~la~~~~~~-~~~~i~v~d~~~g~-~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       191 PILSPA-WSPDGQKLAYVSFES-GKPEIYVQDLATGQ-R-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             ceeccc-CCCCCCEEEEEEcCC-CCcEEEEEECCCCC-E-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            455556 999999998665443 23589999998762 2 23344566777899999998776 4555554    47777


Q ss_pred             CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCCC
Q 016134          203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DN--TIRVWELDTLEPVMTLNDHTDA  277 (394)
Q Consensus       203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~h~~~  277 (394)
                      ++....+..+...                      .....|+  ++.|+..+. ++  .|.++|+.+++.. .+..+...
T Consensus       267 ~~~~~~l~~~~~~----------------------~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~  323 (417)
T TIGR02800       267 GKQLTRLTNGPGI----------------------DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGY  323 (417)
T ss_pred             CCCEEECCCCCCC----------------------CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC
Confidence            7765544332211                      1223443  455554443 33  5778888776643 44444556


Q ss_pred             cEEEEEc--CCEEEEEeCCC---cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEEC
Q 016134          278 PMSLLCW--DQFLLSCSLDH---TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYEL  349 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~  349 (394)
                      +..+.|+  +++|+..+.++   .|.+||+.++.. ..+.... ...    ...|+|+++ .|+..+.++   .+.+.+.
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~----~p~~spdg~-~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDE----SPSFAPNGR-MILYATTRGGRGVLGLVST  396 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCC----CceECCCCC-EEEEEEeCCCcEEEEEEEC
Confidence            6677777  77888877765   788999876433 2222211 111    224699999 454444432   3555554


Q ss_pred             C
Q 016134          350 P  350 (394)
Q Consensus       350 ~  350 (394)
                      .
T Consensus       397 ~  397 (417)
T TIGR02800       397 D  397 (417)
T ss_pred             C
Confidence            3

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=9.8e-08  Score=91.06  Aligned_cols=196  Identities=15%  Similarity=0.124  Sum_probs=140.7

Q ss_pred             cCCCCEEEEEeCCCc--eeecCCCcEEEecC----CCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe------cCCeEEE
Q 016134          183 PLRSDKLFSGSRDGT--AWNIESSAEFSLDG----PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV------GRSRLCS  250 (394)
Q Consensus       183 s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~----~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~------~~~~l~s  250 (394)
                      .|...++|....||.  ||+...++......    ..+.-.+..|.   |.+.   .......++.+      +...++-
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~---~s~~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSAD---YSPMKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEec---cchHHHHhHHHHhhccCCceEEEe
Confidence            345678999999998  79999988763322    22233333332   1111   11111112211      1346888


Q ss_pred             EeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee
Q 016134          251 GSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL  326 (394)
Q Consensus       251 gs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  326 (394)
                      |...|.|-+|+...++....+.  .|.+.|.++.+.  -..|.+++.|..+..|+.........+.........++    
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~----  151 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC----  151 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE----
Confidence            9999999999999999888886  588999999887  45899999999999999988877777766555444444    


Q ss_pred             ECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCC-----C-E-EEEEeCCCeEEEEeCCC
Q 016134          327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPD-----K-L-FFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~-----~-~-l~tgs~Dg~I~vWd~~~  391 (394)
                      ++||++ +|++++  ++|++||+++.+.+..+.+ ..+|++++|.-+     | + |.+...+.-|.+|-+..
T Consensus       152 is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  152 ISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            489998 888876  7899999999999999887 778999999876     5 4 44444566678887654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=2e-08  Score=97.77  Aligned_cols=202  Identities=21%  Similarity=0.225  Sum_probs=125.7

Q ss_pred             EEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          166 MLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      .-..+.+|...|+++.|+|.. ..|++++.|-.  .||+.+.....        +.            .+.-...-..++
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--------ys------------~~~w~s~asqVk  165 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--------YS------------TSSWRSAASQVK  165 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--------ee------------eecccccCceee
Confidence            345668999999999999854 68999999988  59998765431        11            111223345567


Q ss_pred             ec---CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          243 VG---RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       243 ~~---~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      |+   ++.+++ +..+.|++||++.+ .++..+++|...|..+.|.   ...+.+++.|++|+.||............. 
T Consensus       166 wnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-  243 (1081)
T KOG0309|consen  166 WNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-  243 (1081)
T ss_pred             ecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-
Confidence            76   444544 56678999999875 5788999999999999988   567899999999999998654322211111 


Q ss_pred             CCcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCC---------C-ceeEEEec-CCcEEEEEEC--------CCC--
Q 016134          316 EDNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPS---------F-MERGRIFS-KHEVRVIEIG--------PDK--  373 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~---------~-~~~~~~~~-~~~v~~l~~s--------p~~--  373 (394)
                        .....+...|-|-|+.+.+.- -.+..+.+++-++         + ..+..+.+ .+.|....|-        -|.  
T Consensus       244 --t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd  321 (1081)
T KOG0309|consen  244 --TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD  321 (1081)
T ss_pred             --ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence              111222333455444222211 1122444444332         2 23444433 2233333222        222  


Q ss_pred             -EEEEEeCCCeEEEEeCCC
Q 016134          374 -LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       374 -~l~tgs~Dg~I~vWd~~~  391 (394)
                       .|+|=+.|..+++|-+..
T Consensus       322 fQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  322 FQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeEEEeecCCceEeeeccH
Confidence             899999999999998864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.88  E-value=1.2e-06  Score=83.80  Aligned_cols=121  Identities=18%  Similarity=0.103  Sum_probs=101.0

Q ss_pred             ecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134          230 AQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       230 ~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                      +.+.|.+.|.++.++.  ..|.+++.|+.+..|+..+.+.+..+++....+.++++.  +..|++++  ++|++||+++.
T Consensus        97 st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k  174 (541)
T KOG4547|consen   97 STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK  174 (541)
T ss_pred             ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence            3458999999999874  569999999999999999999999999988899999998  55888876  58999999999


Q ss_pred             ceeeEeecccCCcceEEEEeeECCC-CCcEEEEEeCCCeEEEEECCCC
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPD-GKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      +.+..+.+|..++..+++...++-. |.++|.+...+..|.+|-+...
T Consensus       175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            9999999999888877775444433 7767777777888888977653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.84  E-value=1.9e-07  Score=83.69  Aligned_cols=255  Identities=13%  Similarity=0.154  Sum_probs=158.6

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccC------------CCeEEEEecCCC--CEE
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHE------------KAVSGIALPLRS--DKL  189 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~------------~~V~~l~~s~~~--~~l  189 (394)
                      .+.++. +.-.|.+||+++-.|    -|-++.-+..    .....+++.|.            ..|..+.|.+++  ..+
T Consensus        27 iis~ve-f~~~Ge~LatGdkgG----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   27 IISAVE-FDHYGERLATGDKGG----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             ceeeEE-eecccceEeecCCCC----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            455666 888899998777666    7777765433    23666777774            568999998755  456


Q ss_pred             EEEeCCCc--eeecCCCcEE------EecCCCCcEEEEEE---cC-CEEEEEe-----cCCCCCCEEEEEec-CCeEEEE
Q 016134          190 FSGSRDGT--AWNIESSAEF------SLDGPVGEVYSMVV---AN-EMLFAGA-----QDGHTRPVTCLAVG-RSRLCSG  251 (394)
Q Consensus       190 ~sgs~Dg~--vWd~~~~~~~------~~~~~~~~v~~l~~---~~-~~l~~~~-----~~~h~~~V~~l~~~-~~~l~sg  251 (394)
                      +..+.|.+  +|.+......      ........+.++..   .+ +.++.+.     ...|+--|++|.++ ....+..
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            77777887  6987654322      11223333444332   11 1222222     22789999999997 3334444


Q ss_pred             eCCCeEEEEeCCCCce---eEEEcCC-----CCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCcee----eEeecccC
Q 016134          252 SMDNTIRVWELDTLEP---VMTLNDH-----TDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNL----EAAYTHKE  316 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~---~~~~~~h-----~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~----~~~~~~~~  316 (394)
                      +.|-.|.+|+++--..   +-.++.+     +..|++..|+   -+.|+-.+..|+|++-|+|.....    ..+.....
T Consensus       182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            5688999999864221   2233333     3467888888   467777888999999999843211    11111111


Q ss_pred             C---------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-CceeEEEec-------------CCc---EEEEEEC
Q 016134          317 D---------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-FMERGRIFS-------------KHE---VRVIEIG  370 (394)
Q Consensus       317 ~---------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~-------------~~~---v~~l~~s  370 (394)
                      +         +..+ -.+.|+++|+ ++++-. =-+|+|||+.. .+++..+..             ...   -..++|+
T Consensus       262 p~~rsffseiIsSI-SDvKFs~sGr-yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  262 PSSRSFFSEIISSI-SDVKFSHSGR-YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             CcchhhHHHHhhhh-hceEEccCCc-EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence            1         1111 1345789998 777543 36899999953 344443332             112   3567899


Q ss_pred             CCC-EEEEEeCCCeEEEEeCC
Q 016134          371 PDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       371 p~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .++ +++||+....++++++.
T Consensus       339 g~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  339 GNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             CCcceEecccccceEEEecCC
Confidence            888 99999999999999854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2.8e-06  Score=83.37  Aligned_cols=206  Identities=15%  Similarity=0.074  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC-c----eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG-T----AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      .|.++|.... . .+.+..+...+....|+|||+.|+..+.+. .    +||+.+++...+....+...           
T Consensus       199 ~l~i~d~dG~-~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-----------  265 (448)
T PRK04792        199 QLMIADYDGY-N-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-----------  265 (448)
T ss_pred             EEEEEeCCCC-C-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-----------
Confidence            5667776443 2 244556678899999999999988776543 2    57887776544322221112           


Q ss_pred             EecCCCCCCEEEEEec--CCeEE-EEeCCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEE
Q 016134          229 GAQDGHTRPVTCLAVG--RSRLC-SGSMDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIK  298 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~--~~~l~-sgs~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~  298 (394)
                                 ...|+  ++.|+ +.+.++.  |.++|+.+++. ..+..+........|+  ++.|+..+. ++  .|.
T Consensus       266 -----------~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy  333 (448)
T PRK04792        266 -----------APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY  333 (448)
T ss_pred             -----------CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence                       23444  44443 4455564  77789887664 3444455556677777  666665553 44  466


Q ss_pred             EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECCCCceeEEEecCCcEEEEEECCCC-EE
Q 016134          299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LF  375 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l  375 (394)
                      ++|+.+++...... .....    ....|+|+|+.++++...++  .|.++|+.+++.. .+..........|+||+ .|
T Consensus       334 ~~dl~~g~~~~Lt~-~g~~~----~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I  407 (448)
T PRK04792        334 RVNLASGKVSRLTF-EGEQN----LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMV  407 (448)
T ss_pred             EEECCCCCEEEEec-CCCCC----cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEE
Confidence            66776555433221 11111    12246999995555544444  4556787776543 22222222345799999 44


Q ss_pred             -EEEeCCCe--EEEEeCC
Q 016134          376 -FTGDGAGM--LGVWKLL  390 (394)
Q Consensus       376 -~tgs~Dg~--I~vWd~~  390 (394)
                       ++...++.  +.+++++
T Consensus       408 ~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        408 IYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             EEEEecCCceEEEEEECC
Confidence             44444554  5555553

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.83  E-value=5.6e-08  Score=85.33  Aligned_cols=216  Identities=14%  Similarity=0.142  Sum_probs=129.8

Q ss_pred             CCeEEEEEcCCCceEEEEeccc---CCC---eEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGH---EKA---VSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h---~~~---V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      .+.|.++..... .....|.+-   .-.   -.++.|++.+..++++-.+|.+= ..+.....+                
T Consensus        94 ~G~i~~~r~~~~-~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~-~v~~t~~~l----------------  155 (339)
T KOG0280|consen   94 RGQIQLYRNDED-ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS-GVYETEMVL----------------  155 (339)
T ss_pred             cceEEEEeeccc-eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE-EEecceeee----------------
Confidence            346777765432 223333321   112   34567777788888877777632 001111000                


Q ss_pred             EEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC-CCceeEE-EcCCCCCcEEEEEc---CCEEEEEeCCCcE
Q 016134          226 LFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD-TLEPVMT-LNDHTDAPMSLLCW---DQFLLSCSLDHTI  297 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~-~~~~~~~-~~~h~~~v~~l~~~---~~~l~s~s~Dg~i  297 (394)
                      .-+.....|.-+++...|+   ++++++|+.|+.+..||++ .++.+.. .+.|...|.++..+   +.++++|+.|-.|
T Consensus       156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence            0011344788888888886   7899999999999999999 3444443 45688999999888   5699999999999


Q ss_pred             EEEEeCC-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE----EEec--CCcEEEEEEC
Q 016134          298 KVWFATG-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG----RIFS--KHEVRVIEIG  370 (394)
Q Consensus       298 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~----~~~~--~~~v~~l~~s  370 (394)
                      ++||.|+ ++++...   .....+..+.  .+|.-...|+.++.-+-.+|-+........    ....  ..-+..-.|.
T Consensus       236 ~~~DtRnm~kPl~~~---~v~GGVWRi~--~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd  310 (339)
T KOG0280|consen  236 RVLDTRNMGKPLFKA---KVGGGVWRIK--HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD  310 (339)
T ss_pred             eeeehhcccCccccC---ccccceEEEE--ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccc
Confidence            9999995 3333322   1113344333  455443344555566667888777653321    1111  2225555664


Q ss_pred             CCC-EEEEEe-CCCeEE-EEeCC
Q 016134          371 PDK-LFFTGD-GAGMLG-VWKLL  390 (394)
Q Consensus       371 p~~-~l~tgs-~Dg~I~-vWd~~  390 (394)
                      ... .|+|++ .|..|+ +|---
T Consensus       311 ~~~~~lATCsFYDk~~~~~Wl~~  333 (339)
T KOG0280|consen  311 SKDSFLATCSFYDKKIRQLWLHI  333 (339)
T ss_pred             cccceeeeeeccccceeeeeeec
Confidence            333 788876 677755 88543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=1.7e-08  Score=90.30  Aligned_cols=133  Identities=15%  Similarity=0.092  Sum_probs=102.3

Q ss_pred             CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCcEEEEE---cCCEEEEEeCCCcEEEEEeCC
Q 016134          235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL-----EPVMTLNDHTDAPMSLLC---WDQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~-----~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~vwd~~~  304 (394)
                      .+.|.++.|.  ++++..|...|.|..+|++.+     .+.+.+. |.+.|+++..   ++++|++.+.+|+|++||++.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            4567777775  789999999999999999864     4566665 8889988764   488999999999999999998


Q ss_pred             Cce---eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-----CcEEEEEECC
Q 016134          305 RGN---LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-----HEVRVIEIGP  371 (394)
Q Consensus       305 ~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----~~v~~l~~sp  371 (394)
                      -++   +....+|-.....+.+.  ..++.. .++++++|...+||.+.++.++.+++..     ..+.+++|..
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~--v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAH--VKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             hhcccceeeeecccccccccccc--cccccc-eEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            777   67777776544433332  355555 7888999999999999999998888752     2466666654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.81  E-value=3.5e-05  Score=73.06  Aligned_cols=241  Identities=12%  Similarity=0.165  Sum_probs=137.7

Q ss_pred             CCCCeEEEEEc--CCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCC----c--eeecCC--CcEE---EecCCCCc
Q 016134          150 DECRFLHSWFC--GEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG----T--AWNIES--SAEF---SLDGPVGE  215 (394)
Q Consensus       150 ~~~~~i~iWd~--~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg----~--vWd~~~--~~~~---~~~~~~~~  215 (394)
                      ...+.|++|++  +++ .+.+.. ..-......|+++|++++|++....+    .  .|++..  ++..   ........
T Consensus        10 ~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   10 GKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS   88 (345)
T ss_dssp             SSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred             CCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence            34457888877  333 122233 22445667789999999999998853    2  355544  3332   12212333


Q ss_pred             EEEEEEcCC--EEEEEecC---------------------------------CCCCCEEEEEec--CCeEEEEe-CCCeE
Q 016134          216 VYSMVVANE--MLFAGAQD---------------------------------GHTRPVTCLAVG--RSRLCSGS-MDNTI  257 (394)
Q Consensus       216 v~~l~~~~~--~l~~~~~~---------------------------------~h~~~V~~l~~~--~~~l~sgs-~Dg~V  257 (394)
                      ...+++.++  .++++...                                 .......++.++  ++++++.. ....|
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence            445666655  55555433                                 012345567776  45665543 34589


Q ss_pred             EEEeCCCCc--e--eEEEc-CCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeC--CCc--eeeEeecccCC--cceEEE
Q 016134          258 RVWELDTLE--P--VMTLN-DHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFAT--GRG--NLEAAYTHKED--NGVLAL  323 (394)
Q Consensus       258 ~iwd~~~~~--~--~~~~~-~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~--~~~--~~~~~~~~~~~--~~~~~~  323 (394)
                      .+|++....  .  ...+. ........+.|+  +++++... .+++|.++++.  .+.  .+..+......  .....-
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999987654  3  22232 234556889998  56665554 57889999998  321  12222221111  111233


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCC--Cc--eeEEEec-CCcEEEEEECCCC-EEEEE-eCCCeEEEEeCCC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPS--FM--ERGRIFS-KHEVRVIEIGPDK-LFFTG-DGAGMLGVWKLLA  391 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~--~~--~~~~~~~-~~~v~~l~~sp~~-~l~tg-s~Dg~I~vWd~~~  391 (394)
                      .+.++|+|+.++++-..+++|.+|++..  +.  .+..+.. ....+.++++|+| +|+++ -.++.|.+|+++.
T Consensus       249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            3446999996667777788999999932  32  3333333 4458999999999 55555 4777999998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=2.9e-06  Score=82.67  Aligned_cols=213  Identities=15%  Similarity=0.088  Sum_probs=115.5

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEE---EEEeCCCc--e--eecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL---FSGSRDGT--A--WNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l---~sgs~Dg~--v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      .|.+.|...+ .. +.+......+..-+|+|||+.+   ++...++.  |  .++.+++...+....+......|+||  
T Consensus       166 ~l~~~d~dG~-~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD--  241 (428)
T PRK01029        166 ELWSVDYDGQ-NL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR--  241 (428)
T ss_pred             eEEEEcCCCC-Cc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC--
Confidence            5666676543 22 3344455667788999999752   34444444  4  56666665554433333334444444  


Q ss_pred             EEEecCCCCCCEEEEEecCCeEEEEe-----CCCeEEEEeCCCC---ceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCC
Q 016134          227 FAGAQDGHTRPVTCLAVGRSRLCSGS-----MDNTIRVWELDTL---EPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDH  295 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~l~sgs-----~Dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg  295 (394)
                                        ++.|+..+     .|-.+.+|++..+   +..+....+........|+  |+.|+..+ .++
T Consensus       242 ------------------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g  303 (428)
T PRK01029        242 ------------------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG  303 (428)
T ss_pred             ------------------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence                              33333322     1334455776642   3333333322334566777  67776655 466


Q ss_pred             cEEEEEe--CC-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--CeEEEEECCCCceeEEEecCCcEEEEEEC
Q 016134          296 TIKVWFA--TG-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--NTVHLYELPSFMERGRIFSKHEVRVIEIG  370 (394)
Q Consensus       296 ~i~vwd~--~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~v~~l~~s  370 (394)
                      ...+|.+  .. +.....+........    ...|+|||+.++++...+  ..|.+||+.+++..........+....|+
T Consensus       304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~----~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wS  379 (428)
T PRK01029        304 RPRIYIMQIDPEGQSPRLLTKKYRNSS----CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWA  379 (428)
T ss_pred             CceEEEEECcccccceEEeccCCCCcc----ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEEC
Confidence            6566644  32 222222322222122    234699999444444333  46999999988664433333467789999


Q ss_pred             CCC-EEE-EEeC--CCeEEEEeCCCC
Q 016134          371 PDK-LFF-TGDG--AGMLGVWKLLAK  392 (394)
Q Consensus       371 p~~-~l~-tgs~--Dg~I~vWd~~~~  392 (394)
                      ||| .|+ +...  ...|.+|++...
T Consensus       380 pDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        380 IDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCC
Confidence            999 444 4433  346778887654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.80  E-value=1.9e-07  Score=93.14  Aligned_cols=152  Identities=16%  Similarity=0.250  Sum_probs=118.9

Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeC---------CCcEEEEEeCCCce
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSL---------DHTIKVWFATGRGN  307 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~---------Dg~i~vwd~~~~~~  307 (394)
                      .|.=+..++.++.+|...|+|.+-|.++.+.++++.+|++.|.++...|++|++|+.         |..|+|||+|+.+.
T Consensus       179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence            466677778999999999999999999999999999999999999999999999985         66789999998776


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE---CCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCC
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE---LPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd---~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                      +..+..+..+. .+    .|.|.-...+++.+..|...+-|   +.+...-....+  ...+..+++++++ .|+.|..+
T Consensus       259 l~PI~~~~~P~-fl----rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~  333 (1118)
T KOG1275|consen  259 LSPIQFPYGPQ-FL----RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE  333 (1118)
T ss_pred             cCCcccccCch-hh----hhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence            66555444331 11    24665555788888899999999   333311122222  5559999999999 99999999


Q ss_pred             CeEEEEeCCCCC
Q 016134          382 GMLGVWKLLAKP  393 (394)
Q Consensus       382 g~I~vWd~~~~~  393 (394)
                      |.|.+|.=..+|
T Consensus       334 g~v~~wa~~~~P  345 (1118)
T KOG1275|consen  334 GHVNLWADRPQP  345 (1118)
T ss_pred             CcEeeecCCCCC
Confidence            999999854444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=2.5e-06  Score=83.53  Aligned_cols=210  Identities=11%  Similarity=-0.045  Sum_probs=118.1

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc----eeecC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT----AWNIE  202 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~  202 (394)
                      .+.... |+|++.+++-..... ....|.+|++.++. . ..+....+.+...+|+|||+.|+ +.+.++.    +||++
T Consensus       200 ~~~~p~-wSpDG~~la~~s~~~-~~~~l~~~~l~~g~-~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        200 PILSPR-WSPDGKRIAYVSFEQ-KRPRIFVQNLDTGR-R-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             ceeeee-ECCCCCEEEEEEcCC-CCCEEEEEECCCCC-E-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            456666 999999987554332 23479999998763 2 22333344556789999999887 5555554    46888


Q ss_pred             CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCC--eEEEEeCCCCceeEEEcCCCCC
Q 016134          203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDN--TIRVWELDTLEPVMTLNDHTDA  277 (394)
Q Consensus       203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg--~V~iwd~~~~~~~~~~~~h~~~  277 (394)
                      +++...+..+....                      ....|+  ++.|+..+ .++  .|.++|+.+++... +......
T Consensus       276 ~~~~~~lt~~~~~~----------------------~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~  332 (430)
T PRK00178        276 SRQLSRVTNHPAID----------------------TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY  332 (430)
T ss_pred             CCCeEEcccCCCCc----------------------CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC
Confidence            77665443332222                      223444  44444333 233  57777887776433 2211122


Q ss_pred             cEEEEEc--CCEEEEEeCC-C--cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECC
Q 016134          278 PMSLLCW--DQFLLSCSLD-H--TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELP  350 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~D-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~  350 (394)
                      .....|+  ++.|+..+.+ +  .|.++|+.+++... +.. .....    ...|+|+|+.++++...++  .|.++++.
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~----~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDE----SPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCC----CceECCCCCEEEEEEecCCceEEEEEECC
Confidence            2334555  7777766643 3  57888987765422 221 11111    2246999995555544443  46666775


Q ss_pred             CCceeEEEec-CCcEEEEEECC
Q 016134          351 SFMERGRIFS-KHEVRVIEIGP  371 (394)
Q Consensus       351 ~~~~~~~~~~-~~~v~~l~~sp  371 (394)
                      .. ....+.. ...+...+|+|
T Consensus       407 g~-~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        407 GR-VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CC-ceEECcCCCCCcCCCccCC
Confidence            33 3333333 34567777776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.75  E-value=1.2e-05  Score=71.85  Aligned_cols=214  Identities=11%  Similarity=0.035  Sum_probs=130.2

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEE--ecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIA--LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~--~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      ++.|..||..++ +.+....- ...+....  ..+++..+++++.++.|  ||..+++.+-.......+           
T Consensus         2 ~g~l~~~d~~tG-~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-----------   68 (238)
T PF13360_consen    2 DGTLSALDPRTG-KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-----------   68 (238)
T ss_dssp             TSEEEEEETTTT-EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-----------
T ss_pred             CCEEEEEECCCC-CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-----------
Confidence            458999999888 55555432 11122222  22356778888777774  888888876221111110           


Q ss_pred             EEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE-cCCC-----CCcEEEEEcCCEEEEEeCCCcEEEEE
Q 016134          228 AGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL-NDHT-----DAPMSLLCWDQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~-----~~v~~l~~~~~~l~s~s~Dg~i~vwd  301 (394)
                             ...   ....++.++.++.|+.|+.+|.++++.+.++ ....     .......+.++.++.+..++.|..+|
T Consensus        69 -------~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d  138 (238)
T PF13360_consen   69 -------SGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALD  138 (238)
T ss_dssp             -------GSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred             -------cce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEe
Confidence                   011   2334677788888899999999999998874 3221     12233444588899999899999999


Q ss_pred             eCCCceeeEeecccCCcce-------EEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134          302 ATGRGNLEAAYTHKEDNGV-------LALGGLNDPDGKPVLICACNDNT-VHLYELPSFMERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~  373 (394)
                      +++++.+-...........       ...... ..++  .+..+..++. +.+ |+.+++.+-... ...+..+....++
T Consensus       139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~  213 (238)
T PF13360_consen  139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPV-ISDG--RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGG  213 (238)
T ss_dssp             TTTTEEEEEEESSTT-SS--EEEETTEEEEEE-CCTT--EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCT
T ss_pred             cCCCcEEEEeecCCCCCCcceeeecccccceE-EECC--EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCC
Confidence            9999887666553322111       011111 2234  3444555664 555 999998664333 3444443333344


Q ss_pred             EEEEEeCCCeEEEEeCCCCC
Q 016134          374 LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       374 ~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .|+.++.++.|..||+.+..
T Consensus       214 ~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  214 TLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEEEETTTEEEEEETTTTE
T ss_pred             EEEEEeCCCEEEEEECCCCC
Confidence            77777799999999998764

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.74  E-value=2.9e-07  Score=82.11  Aligned_cols=182  Identities=16%  Similarity=0.133  Sum_probs=118.2

Q ss_pred             EEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCC
Q 016134          179 GIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMD  254 (394)
Q Consensus       179 ~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~D  254 (394)
                      -.+|+|+|+++|+++.-.. |-|.++-+...+..--                      ..|.-+.|.   .-.|.....|
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cl----------------------dki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCL----------------------DKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHH----------------------HHhhheeeeccceeeeeeeecc
Confidence            3689999999999998865 4666665543221111                      122333443   1235666789


Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG  331 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  331 (394)
                      +.|.+|++...+-...+......+.++.|+  |+ .|.+...|-+|.+|.+.+.+..... ..+.....+    .|+|+|
T Consensus        71 ~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~----~f~~dg  145 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGY----AFHPDG  145 (447)
T ss_pred             ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeE----EECCCC
Confidence            999999999887777787788899999998  54 5666667999999999876544322 222222223    357888


Q ss_pred             CcEEEEEeC------------------------------------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-E
Q 016134          332 KPVLICACN------------------------------------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-L  374 (394)
Q Consensus       332 ~~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~  374 (394)
                      + +.+..+.                                    ++.+.+||-.-...+..+...-.+..++|+|-+ +
T Consensus       146 ~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  146 Q-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             c-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccce
Confidence            7 4333221                                    223445554333333333335578999999977 9


Q ss_pred             EEEEeCCCeEEEEe
Q 016134          375 FFTGDGAGMLGVWK  388 (394)
Q Consensus       375 l~tgs~Dg~I~vWd  388 (394)
                      |+.|+.|+.+||-+
T Consensus       225 lavGsyD~~lrvln  238 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLN  238 (447)
T ss_pred             EEeeccchhhhhhc
Confidence            99999999988743

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.73  E-value=2.1e-06  Score=74.69  Aligned_cols=209  Identities=11%  Similarity=0.054  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCce-EEEEecccCCCeEEEEecC-----CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          154 FLHSWFCGEGLT-MLAKLEGHEKAVSGIALPL-----RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       154 ~i~iWd~~~~~~-~~~~l~~h~~~V~~l~~s~-----~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      .+-+|+..++.+ .+..+       +.+.|-|     ...+||.|+.-|.  +|...+.+.......             
T Consensus        53 sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-------------  112 (344)
T KOG4532|consen   53 SVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD-------------  112 (344)
T ss_pred             eeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-------------
Confidence            567788755532 23333       3455655     3468888888887  688876654321100             


Q ss_pred             EEEEecCCCCCCEE---EEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          226 LFAGAQDGHTRPVT---CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       226 l~~~~~~~h~~~V~---~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                             .|...|+   ..+-..-.+..++.|.++++.++.-+.....+....-.+.++.++  ++++++.+....|..|
T Consensus       113 -------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y  185 (344)
T KOG4532|consen  113 -------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRY  185 (344)
T ss_pred             -------ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEE
Confidence                   1122111   111123447778899999999886544333222222236677777  7899999999999999


Q ss_pred             EeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe------cCCcEEEEEECCCC
Q 016134          301 FATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF------SKHEVRVIEIGPDK  373 (394)
Q Consensus       301 d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~sp~~  373 (394)
                      .+..... +..+.......  -.++..|+.... .+|++..||++.|||++.........      +.+.++.+.|++-|
T Consensus       186 ~id~~sey~~~~~~a~t~D--~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  186 AIDDESEYIENIYEAPTSD--HGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             EeCCccceeeeeEecccCC--CceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            9875432 22222222222  233444677766 89999999999999999764332221      25679999999877


Q ss_pred             ---EEEEEeCCCeEEEEeCCCC
Q 016134          374 ---LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       374 ---~l~tgs~Dg~I~vWd~~~~  392 (394)
                         +|+..-.-+.+.+-|+.+-
T Consensus       263 ~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  263 LLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             cceEEEEecCcceEEEEEcccC
Confidence               6777767778888887653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=3.9e-08  Score=92.93  Aligned_cols=159  Identities=16%  Similarity=0.229  Sum_probs=116.8

Q ss_pred             ecCCCCCCEEEEEe-c-CCeEEEEeCCCeEEEEeCCC-------CceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEE
Q 016134          230 AQDGHTRPVTCLAV-G-RSRLCSGSMDNTIRVWELDT-------LEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW  300 (394)
Q Consensus       230 ~~~~h~~~V~~l~~-~-~~~l~sgs~Dg~V~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vw  300 (394)
                      .+.+|+..|..++- + .+-+++++.|++|++|.++.       ..|..+++.|..+|.++.|...+-..++.|+.|.+|
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW  809 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW  809 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence            44588888888764 3 67899999999999999863       347788899999999999985443444568999999


Q ss_pred             EeCCCceeeEeecccCC---cceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCceeEEEec------CCcEEEEEEC
Q 016134          301 FATGRGNLEAAYTHKED---NGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFMERGRIFS------KHEVRVIEIG  370 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~------~~~v~~l~~s  370 (394)
                      |.--++.+..+......   ..+.++   -+-+.. +++.| +...+|+++|.+..+....+.-      ..-++++++.
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~-iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRH-ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEec---ccCcch-heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            97766665543332221   222333   233444 55555 7889999999999876655543      2458999999


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCC
Q 016134          371 PDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       371 p~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.| .++.+-..|+|.+-|..+.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCC
Confidence            999 9999999999999987764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.72  E-value=4.5e-06  Score=81.92  Aligned_cols=213  Identities=10%  Similarity=-0.051  Sum_probs=116.8

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEE-EeCCCc----eeecC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFS-GSRDGT----AWNIE  202 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s-gs~Dg~----vWd~~  202 (394)
                      .+.... |+|++.+++-..... ....|.+||+.++..  ..+....+.....+|+|||+.|+. .+.++.    ++|++
T Consensus       219 ~~~~p~-wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        219 PLMSPA-WSPDGRKLAYVSFEN-RKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             cccCce-ECCCCCEEEEEEecC-CCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            344555 999999987654432 234689999876632  122222334457899999998764 556665    46777


Q ss_pred             CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEe-CCC--eEEEEeCCCCceeEEEcCCCCCcE
Q 016134          203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS-MDN--TIRVWELDTLEPVMTLNDHTDAPM  279 (394)
Q Consensus       203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs-~Dg--~V~iwd~~~~~~~~~~~~h~~~v~  279 (394)
                      +++...+..+........|+++                    ++.|+..+ .++  .|.++|+.+++... +........
T Consensus       295 tg~~~~lt~~~~~~~~p~wSpD--------------------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~  353 (448)
T PRK04792        295 TKALTRITRHRAIDTEPSWHPD--------------------GKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNL  353 (448)
T ss_pred             CCCeEECccCCCCccceEECCC--------------------CCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCc
Confidence            7765544333222222333322                    34443333 233  56667887776433 221222233


Q ss_pred             EEEEc--CCEEEEEeC-CC--cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCC
Q 016134          280 SLLCW--DQFLLSCSL-DH--TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSF  352 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~  352 (394)
                      ...|+  +++|+..+. ++  .|.++|+.+++.. .+.... ...    ...|+|+|+.++++...++.  +.+++.. +
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~----~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G  426 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDE----SPSVAPNGTMVIYSTTYQGKQVLAAVSID-G  426 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCC----CceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence            44565  677766554 34  4555677665432 222111 111    22469999955555555554  6677764 4


Q ss_pred             ceeEEEec-CCcEEEEEECCC
Q 016134          353 MERGRIFS-KHEVRVIEIGPD  372 (394)
Q Consensus       353 ~~~~~~~~-~~~v~~l~~sp~  372 (394)
                      .....+.. ...+...+|+|-
T Consensus       427 ~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        427 RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CceEECcCCCCCcCCCccCCC
Confidence            44444443 455777888873

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.69  E-value=6.4e-06  Score=77.64  Aligned_cols=247  Identities=11%  Similarity=0.202  Sum_probs=144.5

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----------
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----------  197 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----------  197 (394)
                      .+..+. ++|++.+++.....|     |.+|.-....++.+..   ...|..+.|+|.+++|.|-+....          
T Consensus        34 p~~~~~-~SP~G~~l~~~~~~~-----V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          34 PVAYVS-ESPLGTYLFSEHAAG-----VECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             chhhee-ecCcchheehhhccc-----eEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence            666677 999999999877775     8899877664444333   357899999999999999887654          


Q ss_pred             -------eeecCCCcEE-EecCCCCc--EE-EEEEcCC-----EE-------E--EEecCCC------CCCEEEEEecCC
Q 016134          198 -------AWNIESSAEF-SLDGPVGE--VY-SMVVANE-----ML-------F--AGAQDGH------TRPVTCLAVGRS  246 (394)
Q Consensus       198 -------vWd~~~~~~~-~~~~~~~~--v~-~l~~~~~-----~l-------~--~~~~~~h------~~~V~~l~~~~~  246 (394)
                             +||+.++..+ .+.....+  .. -+.|+-+     .+       .  ++..+.|      ...|....|++.
T Consensus       105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence                   7999998876 23222222  12 2333322     11       0  1111111      123444444421


Q ss_pred             ----eEEE-----EeCCCeEEEEeCCCCceeE------------------------------------------------
Q 016134          247 ----RLCS-----GSMDNTIRVWELDTLEPVM------------------------------------------------  269 (394)
Q Consensus       247 ----~l~s-----gs~Dg~V~iwd~~~~~~~~------------------------------------------------  269 (394)
                          .|+.     ...++.++||.+..+..+.                                                
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence                1221     2345566666553221110                                                


Q ss_pred             ----EEcCCCCCcEEEEEc--CCEEEEE--eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC-
Q 016134          270 ----TLNDHTDAPMSLLCW--DQFLLSC--SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN-  340 (394)
Q Consensus       270 ----~~~~h~~~v~~l~~~--~~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~-  340 (394)
                          ....-.++|..+.|.  ++.++++  -.+-.+.++|++..  +. +.........+    .|+|.+. +++.++- 
T Consensus       265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~-~~~Pe~~rNT~----~fsp~~r-~il~agF~  336 (561)
T COG5354         265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LR-FYFPEQKRNTI----FFSPHER-YILFAGFD  336 (561)
T ss_pred             cccceeccccccceeeeecccCCceeEEecccccceeecccccc--eE-EecCCcccccc----cccCccc-EEEEecCC
Confidence                011235677777775  4444443  36777888888754  22 22222222222    2689988 5555443 


Q ss_pred             --CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE--e----CCCeEEEEeCCC
Q 016134          341 --DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG--D----GAGMLGVWKLLA  391 (394)
Q Consensus       341 --dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg--s----~Dg~I~vWd~~~  391 (394)
                        .|.|-+||................+-+.|+||+ ++.+.  +    .|..|.|||+..
T Consensus       337 nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         337 NLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             ccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence              478999999887666544445566778899999 44443  2    478899999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.68  E-value=8.8e-07  Score=79.51  Aligned_cols=223  Identities=16%  Similarity=0.201  Sum_probs=143.0

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeec-CCCcEEEe--cCCCCcEEEEEEcCC--EEEEEecC----
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI-ESSAEFSL--DGPVGEVYSMVVANE--MLFAGAQD----  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~-~~~~~~~~--~~~~~~v~~l~~~~~--~l~~~~~~----  232 (394)
                      ..+++.++||.+.|++...-|...-+++.+.|.+  ||-- +.++...-  .....++.++.+..+  .|+++-..    
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            3677888999999999999998899999999998  5643 34443321  223456677777666  44444333    


Q ss_pred             ------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEe
Q 016134          233 ------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS  292 (394)
Q Consensus       233 ------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  292 (394)
                                        .|...|..+-|+  ...+++.+.|..+.---.+.+..+.... -....+++.+.-.+...|.
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~~~fvGd  172 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDALYAFVGD  172 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeEEEEecc
Confidence                              688888888887  6778888888776543344443322111 0111222222211444455


Q ss_pred             CCCcEEEEEeCC--CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE--ecCCcEEEEE
Q 016134          293 LDHTIKVWFATG--RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI--FSKHEVRVIE  368 (394)
Q Consensus       293 ~Dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~~v~~l~  368 (394)
                      ..+.|.+-.+..  -..+..+..|.......    .|.+... +|.+|..|..+.+||+.-..-....  .+.+.|..+.
T Consensus       173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l----~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCL----KWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS  247 (404)
T ss_pred             cccceEEEEEeecCCceEEEEcCcccceEEE----EEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence            556655554432  23344444454433333    3577766 8999999999999999865443332  2366788877


Q ss_pred             ECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          369 IGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       369 ~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+-- .+++++.||.|.+|+++.+
T Consensus       248 ~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  248 YAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhheeeeeccCCCeEEEEeccce
Confidence            66655 8999999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.67  E-value=3.1e-07  Score=80.76  Aligned_cols=133  Identities=11%  Similarity=0.083  Sum_probs=94.8

Q ss_pred             EEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134          239 TCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~  311 (394)
                      .++.|+  +..++++-.+|.+.+-+.....  .+++++.|.-+++...|+   .+++.+|+.|+.+..||+|-++...-.
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            455565  6778898899999966654443  455889999999999998   678999999999999999954322111


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEecCCcEEEEEECCCC
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~v~~l~~sp~~  373 (394)
                      ....+...+.++.  -+|...++|++|+.|-.|++||.++. +++..-...+.|+.+.++|.-
T Consensus       205 n~kvH~~GV~SI~--ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  205 NSKVHTSGVVSIY--SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             cceeeecceEEEe--cCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            1112223444443  24444459999999999999999954 455444447889999999954

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.67  E-value=7.2e-05  Score=70.12  Aligned_cols=232  Identities=10%  Similarity=0.069  Sum_probs=133.3

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC---------CCc---eeecCCCcEEE-ecCCC------
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR---------DGT---AWNIESSAEFS-LDGPV------  213 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~---------Dg~---vWd~~~~~~~~-~~~~~------  213 (394)
                      +.|.+.|..+. +.+.++..-..+-- + ++||++.|+.+..         +..   +||..+.+.+. +....      
T Consensus        27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            48999999886 77777665444433 4 9999999998887         332   79999998873 32211      


Q ss_pred             -CcEEEEEEcCC--EEEEEecC---------CCCCC-EEEEEec-CCeEEEE--------eCCCeEEEEeCCC-Cce-eE
Q 016134          214 -GEVYSMVVANE--MLFAGAQD---------GHTRP-VTCLAVG-RSRLCSG--------SMDNTIRVWELDT-LEP-VM  269 (394)
Q Consensus       214 -~~v~~l~~~~~--~l~~~~~~---------~h~~~-V~~l~~~-~~~l~sg--------s~Dg~V~iwd~~~-~~~-~~  269 (394)
                       ..-..++++++  .+++...+         -.... +..+..- +..++..        +.||......+.+ ++. ..
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence             12235667776  56655443         11111 2222221 2223332        3444444433322 221 11


Q ss_pred             E---EcCC-----CCCcEEEEE-cCCEEEEEeCCCcEEEEEeCCCce-----eeEeeccc-----CCcceEEEEeeECCC
Q 016134          270 T---LNDH-----TDAPMSLLC-WDQFLLSCSLDHTIKVWFATGRGN-----LEAAYTHK-----EDNGVLALGGLNDPD  330 (394)
Q Consensus       270 ~---~~~h-----~~~v~~l~~-~~~~l~s~s~Dg~i~vwd~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~s~~  330 (394)
                      .   +..-     ..+  .... .+.++....+ |+|.+.|+...+.     ...+....     .+.....  ..++++
T Consensus       184 ~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~d  258 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRA  258 (352)
T ss_pred             eeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCC
Confidence            1   1110     111  1111 2566666555 9999999654322     11111110     0111111  346899


Q ss_pred             CCcEEEEE---------eCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEe-CCCeEEEEeCCCC
Q 016134          331 GKPVLICA---------CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       331 g~~~l~sg---------s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs-~Dg~I~vWd~~~~  392 (394)
                      ++.+++..         ...+.|.++|..+++.+..+.....+..++++||+  +|++.. .++.|.+.|+.+.
T Consensus       259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            98555533         11258999999999999999988999999999998  455444 6888999998764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.65  E-value=3.6e-05  Score=73.97  Aligned_cols=229  Identities=16%  Similarity=0.085  Sum_probs=131.1

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEE-EEEcCCEEE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS-MVVANEMLF  227 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~-l~~~~~~l~  227 (394)
                      .++.|..+|..++ +.+-.+.-..........  ++..++.++.++.+  +|.++++.+-.....+.+.+ .....+.++
T Consensus        73 ~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~  149 (377)
T TIGR03300        73 ADGTVVALDAETG-KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVV  149 (377)
T ss_pred             CCCeEEEEEccCC-cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEE
Confidence            3457888888777 445444333222222222  46778888888874  77777776532222222221 112223333


Q ss_pred             EEecCC-------CCC-CEE---------------EEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC--------
Q 016134          228 AGAQDG-------HTR-PVT---------------CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD--------  276 (394)
Q Consensus       228 ~~~~~~-------h~~-~V~---------------~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~--------  276 (394)
                      ++..++       .++ .++               +....++.++.+..++.+..+|+++++.+.+......        
T Consensus       150 v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       150 VRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             EECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            333221       010 011               1112245678888899999999999987655431100        


Q ss_pred             ---CcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          277 ---APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       277 ---~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                         ...+..+.+..++.++.++.+..||..+++.+-.....  ......      ..+. .++.++.||.|..+|..+++
T Consensus       230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~------~~~~-~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA------VDDN-RLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce------EeCC-EEEEECCCCeEEEEECCCCc
Confidence               01122334778888899999999999888655433311  111111      1334 56667789999999999998


Q ss_pred             eeEEEec-CC-cEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          354 ERGRIFS-KH-EVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       354 ~~~~~~~-~~-~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+-.... .. ...+.... ++.|++++.+|.|.++|..+.
T Consensus       301 ~~W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       301 ELWKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             EEEccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCC
Confidence            7655422 22 22222222 348889999999999997654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=7e-08  Score=91.27  Aligned_cols=209  Identities=16%  Similarity=0.190  Sum_probs=134.9

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      -.+..+.||+..|..++--.+.+-+++++.|++  +|.++....-      ....+..|        ++..|..+|.++.
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------~~tsaCQf--------TY~aHkk~i~~ig  791 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------IGTSACQF--------TYQAHKKPIHDIG  791 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------cccceeee--------EhhhccCccccee
Confidence            346778899999999988778889999999999  5998643211      01111122        3448999999998


Q ss_pred             ecCCeEEEEeCCCeEEEEeCCCCceeEEEcC-----CCCCcEEEEEcC-C-EEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          243 VGRSRLCSGSMDNTIRVWELDTLEPVMTLND-----HTDAPMSLLCWD-Q-FLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       243 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~-~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      |-.++-..++.|+-|++||.--++++..+..     ..+.|.++.-.. . +++-|+...+|+++|.+..+-...+....
T Consensus       792 fL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn  871 (1034)
T KOG4190|consen  792 FLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN  871 (1034)
T ss_pred             eeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc
Confidence            8755544556789999999877776654432     223344443322 2 34445788999999999877666665543


Q ss_pred             CCcc-eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEE-Ee
Q 016134          316 EDNG-VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGV-WK  388 (394)
Q Consensus       316 ~~~~-~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~v-Wd  388 (394)
                      .+.. ....+....+.|+ .++.+-.+|.|.+.|.++++.+..... +.....++--.|..|+....|..+.+ |.
T Consensus       872 a~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  872 APGPNALTRAIAVADKGN-KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             CCCCchheeEEEeccCcc-hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeeh
Confidence            2211 2222233467787 788888899999999999987665443 33333333222225555556666655 54

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=0.00018  Score=65.49  Aligned_cols=238  Identities=14%  Similarity=0.157  Sum_probs=144.7

Q ss_pred             CCeEEEEEcCC--CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----e--eecCCCcEEEe---cCCCCcEEEE
Q 016134          152 CRFLHSWFCGE--GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----A--WNIESSAEFSL---DGPVGEVYSM  219 (394)
Q Consensus       152 ~~~i~iWd~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----v--Wd~~~~~~~~~---~~~~~~v~~l  219 (394)
                      ..-|++|++.+  +..-...+..+.+.++-|+|+|+.++|+++-.++.     .  ||-++|+...+   .....+-.-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            44689998863  22333444567889999999999999999988855     2  55554654422   1122233566


Q ss_pred             EEcCC--EEEEEecC----------------------CCCCC----------EEEEEec--CCeEEEEeC-CCeEEEEeC
Q 016134          220 VVANE--MLFAGAQD----------------------GHTRP----------VTCLAVG--RSRLCSGSM-DNTIRVWEL  262 (394)
Q Consensus       220 ~~~~~--~l~~~~~~----------------------~h~~~----------V~~l~~~--~~~l~sgs~-Dg~V~iwd~  262 (394)
                      ++.++  +++++...                      .|...          +....+.  +++|++... --.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            66666  66666544                      23333          5555555  456666653 346899999


Q ss_pred             CCCceeEEEc---CCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCC-ceeeEeecc---c----CCcceEEEEeeEC
Q 016134          263 DTLEPVMTLN---DHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGR-GNLEAAYTH---K----EDNGVLALGGLND  328 (394)
Q Consensus       263 ~~~~~~~~~~---~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~-~~~~~~~~~---~----~~~~~~~~~~~~s  328 (394)
                      ..+++...-.   ........|.|+  +++..... .+++|.+|..... ..+..+..+   .    .....-  .+..+
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a--aIhis  252 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA--AIHIS  252 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee--EEEEC
Confidence            8776432211   234556889999  66665555 4899999998763 333333221   1    112222  33459


Q ss_pred             CCCCcEEEEE-eCCCeEEEEECCCCceeEEEec-----CCcEEEEEECCCC-EEEEEeC-CCeEEEEeCCCC
Q 016134          329 PDGKPVLICA-CNDNTVHLYELPSFMERGRIFS-----KHEVRVIEIGPDK-LFFTGDG-AGMLGVWKLLAK  392 (394)
Q Consensus       329 ~~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~-----~~~v~~l~~sp~~-~l~tgs~-Dg~I~vWd~~~~  392 (394)
                      ++|+ +|.++ -....|-+|.+....-...+..     ....+...+++.+ +|+.+.+ +..|.+|.++.+
T Consensus       253 ~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         253 PDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            9999 55443 3345788888765422222221     3347899999999 6555554 457999987643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.54  E-value=1.5e-05  Score=76.02  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=96.6

Q ss_pred             CeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE
Q 016134          246 SRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA  322 (394)
Q Consensus       246 ~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  322 (394)
                      +++ ++-..++.|.|.|..+.+.+.++......-..+.++  ++++++++.|+.|.++|+.+.+.+..+.....     .
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-----~   80 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-----P   80 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-----E
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-----c
Confidence            444 455568999999999999999998654433345566  78999999999999999999998887765432     2


Q ss_pred             EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--------CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--------KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..+.+++||++++++...++.+.|+|.++.+.+..+..        ...+.++..+|.+  ++++--+.+.|.+-|...
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            23346899995555666799999999999999888765        2357788888887  444445557777777554

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=3.2e-05  Score=75.41  Aligned_cols=210  Identities=14%  Similarity=0.003  Sum_probs=115.2

Q ss_pred             ccccccccCC-CeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc------eeecCCC--
Q 016134          135 KNVCCHWLLG-NCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT------AWNIESS--  204 (394)
Q Consensus       135 ~~~~~~~~~~-~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~------vWd~~~~--  204 (394)
                      |+|++..++- .....+....|.+.++.++..  ..+....+.....+|+|||+.|+..+. ++.      +|++..+  
T Consensus       192 wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~  269 (428)
T PRK01029        192 WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI  269 (428)
T ss_pred             EccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence            9998865332 111112234678888876521  222233445567899999998886653 332      2555442  


Q ss_pred             -cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEE--eCCC-CceeEEEcCCCCC
Q 016134          205 -AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVW--ELDT-LEPVMTLNDHTDA  277 (394)
Q Consensus       205 -~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iw--d~~~-~~~~~~~~~h~~~  277 (394)
                       +...+..                     .+........|+  ++.|+..+ .++...||  ++.. +.....+..+...
T Consensus       270 g~~~~lt~---------------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~  328 (428)
T PRK01029        270 GKPRRLLN---------------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN  328 (428)
T ss_pred             CcceEeec---------------------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC
Confidence             1111111                     111122334565  55555444 45655555  4432 2334445444456


Q ss_pred             cEEEEEc--CCEEEEEeCC---CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECC
Q 016134          278 PMSLLCW--DQFLLSCSLD---HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELP  350 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~  350 (394)
                      +....|+  |+.|+..+.+   ..|.+||+.+++..... .......    ...|+|||+.+++++..  ...|.++|+.
T Consensus       329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~----~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKE----SPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCcc----ceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            6677777  7777766543   46999999877654332 2211112    23469999955445443  3568888998


Q ss_pred             CCceeEEEecCCcEEEEEECCC
Q 016134          351 SFMERGRIFSKHEVRVIEIGPD  372 (394)
Q Consensus       351 ~~~~~~~~~~~~~v~~l~~sp~  372 (394)
                      .++..........+...+|+|-
T Consensus       404 ~g~~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        404 TKKTRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CCCEEEeecCCCcccCceecCC
Confidence            7765444444555777888874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.53  E-value=1.5e-06  Score=85.21  Aligned_cols=215  Identities=15%  Similarity=0.161  Sum_probs=138.8

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEeccc-CCCeEEEEecCCC---CEEEEEeCCCc-eeecCC
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGH-EKAVSGIALPLRS---DKLFSGSRDGT-AWNIES  203 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h-~~~V~~l~~s~~~---~~l~sgs~Dg~-vWd~~~  203 (394)
                      +..+. .+|++.-++.++..|     +.+-|+...+.+-+-+..- .=.|-.+.|+|..   ..+++-+.... ||++..
T Consensus        27 ~~a~s-i~p~grdi~lAsr~g-----l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   27 FNAVS-INPSGRDIVLASRQG-----LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             cccee-eccccchhhhhhhcC-----eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            34444 889999999888877     6777776665554444321 2246778887743   23554444444 688754


Q ss_pred             Cc--EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCC
Q 016134          204 SA--EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDA  277 (394)
Q Consensus       204 ~~--~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~  277 (394)
                      ..  .+.+.                    .-+|...|+.+.|+   +..+++++-|-.|..||+++. .++..+..-...
T Consensus       101 ss~~aIef~--------------------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~  160 (1081)
T KOG0309|consen  101 SSSNAIEFV--------------------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA  160 (1081)
T ss_pred             CCccceEEE--------------------EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence            32  22221                    12889999999997   578999999999999999874 456666555566


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee-eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      ...+.|+  ...+++.+..+.|++||++.+... ..+.++......+.    |..--...+.+.+.|++|+.||......
T Consensus       161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~----fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID----FNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHH----HhhhhhhhhcccCCCCceeeeccccccc
Confidence            6788888  555666677789999999976543 34444322222121    2221112578889999999999876533


Q ss_pred             e--EEEecCCcEEEEEECCCC
Q 016134          355 R--GRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       355 ~--~~~~~~~~v~~l~~sp~~  373 (394)
                      .  ..+....+|+.-.+.|-|
T Consensus       237 e~~~~vtt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  237 ESKRTVTTNFPIWRGRYLPFG  257 (1081)
T ss_pred             ccceeccccCcceeccccccC
Confidence            2  233335667777777744

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.53  E-value=0.00017  Score=77.70  Aligned_cols=229  Identities=10%  Similarity=0.066  Sum_probs=132.8

Q ss_pred             CCeEEEEEcCCCceEEEEecc--c------------CCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCC
Q 016134          152 CRFLHSWFCGEGLTMLAKLEG--H------------EKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVG  214 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~--h------------~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~  214 (394)
                      ...|+++|....  .+..+.+  .            -.....|+++++++.|+.+...+.   ++|..++....+.+...
T Consensus       589 n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~  666 (1057)
T PLN02919        589 HNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGT  666 (1057)
T ss_pred             CCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCc
Confidence            347888887643  2333322  1            123578899988887777665543   35665654433322100


Q ss_pred             cEEEEEEcCCEEEEEecCC---CCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcC---------C-----
Q 016134          215 EVYSMVVANEMLFAGAQDG---HTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLND---------H-----  274 (394)
Q Consensus       215 ~v~~l~~~~~~l~~~~~~~---h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---------h-----  274 (394)
                      .  ...+.      +...+   .-..-..++++   +.++++.+.++.|++||..++... .+.+         +     
T Consensus       667 ~--g~~~~------gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~  737 (1057)
T PLN02919        667 K--GSDYQ------GGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTST  737 (1057)
T ss_pred             c--cCCCC------CChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccc
Confidence            0  00000      00000   01122456775   345677778899999998776532 2211         1     


Q ss_pred             -CCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeEeecc-------------cCC----cceEEEEeeECCCCCc
Q 016134          275 -TDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEAAYTH-------------KED----NGVLALGGLNDPDGKP  333 (394)
Q Consensus       275 -~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~s~~g~~  333 (394)
                       -.....|+++  ++ ++++-+.+++|++||+.++.........             ...    .......++++++|. 
T Consensus       738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-  816 (1057)
T PLN02919        738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-  816 (1057)
T ss_pred             cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence             1234567777  45 5556666799999998865432111000             000    000012334688998 


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEec--------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          334 VLICACNDNTVHLYELPSFMERGRIFS--------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++++-..++.|++||..++........              -.....|+++++| ++++-+.++.|++||+.++
T Consensus       817 LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        817 IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            888888999999999987755432211              1247889999999 8888889999999999775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.51  E-value=0.00016  Score=67.94  Aligned_cols=117  Identities=10%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCe
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSR  247 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~  247 (394)
                      .+|.+.|.-..+.-+++-++.|..||.   |+|.++++...+...-+.|.+|..+++                    +.+
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~d--------------------GK~  415 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPD--------------------GKK  415 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCC--------------------CcE
Confidence            468888999999888889999999996   799999998777666655555554433                    566


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC----CcEEEEEeCCCce
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD----HTIKVWFATGRGN  307 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D----g~i~vwd~~~~~~  307 (394)
                      ++.+-....+-+.|+.+++....-+...+-|+.+.|+  +.++|-+--+    ..|+++|+..++.
T Consensus       416 ~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         416 VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            7777777788888888887654444455678888888  5566655444    4688888876543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=5.4e-07  Score=80.89  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=105.2

Q ss_pred             CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      +.+..|-+-|++++.  .+.| ..++.|.++.|...+++++.|...|.|  .|++....    +....+..+        
T Consensus       231 G~sqqv~L~nvetg~--~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----G~~~~a~rl--------  295 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGH--QQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----GNGWCAQRL--------  295 (425)
T ss_pred             cccceeEEEEeeccc--cccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----CCCcceEEE--------
Confidence            334456677777762  2333 367889999999999999999999995  66655411    111111111        


Q ss_pred             EEecCCCCCCEEEEE---ecCCeEEEEeCCCeEEEEeCCCCce---eEEEcCCCCCcEEEEEc----CCEEEEEeCCCcE
Q 016134          228 AGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEP---VMTLNDHTDAPMSLLCW----DQFLLSCSLDHTI  297 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~---~~~~~l~sgs~Dg~V~iwd~~~~~~---~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i  297 (394)
                           -|...|+++.   |++.+|++.+.+|+|++||++--++   +++.++|...-.-+-+.    +..+++++.|...
T Consensus       296 -----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  296 -----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             -----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence                 4667777765   5688999999999999999998777   88999987654444444    5688899999999


Q ss_pred             EEEEeCCCceeeEeeccc
Q 016134          298 KVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~  315 (394)
                      |||.++.+..+.++....
T Consensus       371 RiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             EEEecccCceeeccCCCC
Confidence            999999888777665443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.50  E-value=0.00022  Score=66.93  Aligned_cols=246  Identities=11%  Similarity=0.015  Sum_probs=142.2

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCceE
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGLTM  166 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~~~  166 (394)
                      ..++.+-|.++....+..           ..|.....   . .+|++.++..++.      -|..+..|.+||..+. +.
T Consensus        26 ~~~v~ViD~~~~~v~g~i-----------~~G~~P~~---~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~   89 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMT-----------DGGFLPNP---V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LP   89 (352)
T ss_pred             CceEEEEECCCCEEEEEE-----------EccCCCce---e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cE
Confidence            367788888877654311           12221111   1 6677766654443      4555669999999987 66


Q ss_pred             EEEecccC-------CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEE--------cCC-EE
Q 016134          167 LAKLEGHE-------KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVV--------ANE-ML  226 (394)
Q Consensus       167 ~~~l~~h~-------~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~--------~~~-~l  226 (394)
                      +.++.--.       ..-..++++|||++|+....+..    |.|+++++.+......+...-...        +.| .+
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            76665322       23347899999999998886632    799999988743222222121222        222 11


Q ss_pred             EEEecC--CC----CCCEEE-----------EEe-cCCeEEEEeCCCeEEEEeCCC-----CceeEEEcC-------CCC
Q 016134          227 FAGAQD--GH----TRPVTC-----------LAV-GRSRLCSGSMDNTIRVWELDT-----LEPVMTLND-------HTD  276 (394)
Q Consensus       227 ~~~~~~--~h----~~~V~~-----------l~~-~~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~~~-------h~~  276 (394)
                      +....+  +.    +..+..           +.. ++.+++.... |+|.+-|+..     .+.+..+..       ..+
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~  248 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG  248 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence            111111  10    011100           011 2445555444 9999999643     233333221       122


Q ss_pred             CcEEEEEc--CCEEEEEe----------CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEE-EEeCCCe
Q 016134          277 APMSLLCW--DQFLLSCS----------LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI-CACNDNT  343 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~-sgs~dg~  343 (394)
                      .+.-++++  ++.++...          ..+.|.++|..+.+.+..+....   .  ...+.++||++++|+ +...++.
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~--~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---E--IDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---c--eeeEEECCCCCeEEEEeCCCCCc
Confidence            33347776  66666632          12579999999988887776533   2  223346999994454 4446889


Q ss_pred             EEEEECCCCceeEEEec
Q 016134          344 VHLYELPSFMERGRIFS  360 (394)
Q Consensus       344 I~iwd~~~~~~~~~~~~  360 (394)
                      |.++|..+++.+..+..
T Consensus       324 VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       324 LYIFDAETGKELSSVNQ  340 (352)
T ss_pred             EEEEECcCCeEEeeecc
Confidence            99999999999888744

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.50  E-value=6e-06  Score=75.67  Aligned_cols=80  Identities=23%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCcee
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                      ||-..+++++++  +++|+++..|..|||-....--.+..| -+|..-|..++.. ++.|++++.|++|++||+++++.+
T Consensus       149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence            666777777776  678999999999999877654444444 4699999999988 778899999999999999999887


Q ss_pred             eEee
Q 016134          309 EAAY  312 (394)
Q Consensus       309 ~~~~  312 (394)
                      ..+.
T Consensus       229 ~t~d  232 (390)
T KOG3914|consen  229 DTCD  232 (390)
T ss_pred             cccc
Confidence            5543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.48  E-value=3e-06  Score=76.18  Aligned_cols=208  Identities=14%  Similarity=0.189  Sum_probs=125.7

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCce--eecCC-Cc-EE----EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SA-EF----SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~-~~-~~----~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      ..+-|.++.|...|.+|+||..+|.|  +.-+. .+ ..    .+..|..+.       ++|-+.   .....|..+.|.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF-------DYLkSl---eieEKinkIrw~   93 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF-------DYLKSL---EIEEKINKIRWL   93 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc-------chhhhh---hhhhhhhhceec
Confidence            35678999999999999999999984  32211 11 11    111111110       000000   234567777885


Q ss_pred             ----CCeEEEEeCCCeEEEEeCCCCce-----------------------------------eEEE-cCCCCCcEEEEEc
Q 016134          245 ----RSRLCSGSMDNTIRVWELDTLEP-----------------------------------VMTL-NDHTDAPMSLLCW  284 (394)
Q Consensus       245 ----~~~l~sgs~Dg~V~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~  284 (394)
                          ...++....|.+|++|.+.....                                   .+.+ .+|+.-|.++.++
T Consensus        94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N  173 (433)
T KOG1354|consen   94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN  173 (433)
T ss_pred             CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence                34677778899999998853210                                   1111 2466778888887


Q ss_pred             --CCEEEEEeCCCcEEEEEeCCCceeeEee---cccC-CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE-
Q 016134          285 --DQFLLSCSLDHTIKVWFATGRGNLEAAY---THKE-DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR-  357 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~-~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~-  357 (394)
                        .+.+++ ..|=.|.+|++.-...-..+.   .+.. ...-+..+.-|+|...++++-.+..|+|++-|++...+... 
T Consensus       174 sD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  174 SDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             CccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence              344554 567899999986432222221   1111 11112223457888777899899999999999995422111 


Q ss_pred             --Eec--------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          358 --IFS--------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       358 --~~~--------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                        ++.              -..|..+.|+++| +|++-+. -+|++||++-+
T Consensus       253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme  303 (433)
T KOG1354|consen  253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME  303 (433)
T ss_pred             hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence              110              2358899999999 7776644 68999998654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.48  E-value=7.2e-07  Score=77.23  Aligned_cols=148  Identities=19%  Similarity=0.306  Sum_probs=91.6

Q ss_pred             EEEecCCeEEEEeCCCeEEEEeCCCCc-eeEEEcC-CCCCcEEEEEc-CCEEEEEe-----CCCcEEEEEeCCCceeeEe
Q 016134          240 CLAVGRSRLCSGSMDNTIRVWELDTLE-PVMTLND-HTDAPMSLLCW-DQFLLSCS-----LDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       240 ~l~~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~-h~~~v~~l~~~-~~~l~s~s-----~Dg~i~vwd~~~~~~~~~~  311 (394)
                      .+...++.++++..||.+.+++.+.-. ....+.. |.+......+. ++++.++.     .-+..+.|+++..+.+...
T Consensus        96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen   96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             cccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence            333446789999999999999987511 1111111 22111111111 44444332     1234556666543222111


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC--EEEEEeCCCeEEEE
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK--LFFTGDGAGMLGVW  387 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~--~l~tgs~Dg~I~vW  387 (394)
                        +.....+.++  +-+|..++++++|+.||.+-+||.+.......+..  +.+|+.+-|+|..  .|+++++||.+..|
T Consensus       176 --~~~~~~v~~l--~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  176 --KKALDAVTAL--CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             --ccccccchhh--hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence              1111122222  24777777999999999999999998855544433  7789999999987  99999999999999


Q ss_pred             eCCC
Q 016134          388 KLLA  391 (394)
Q Consensus       388 d~~~  391 (394)
                      |.++
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            9874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.5e-05  Score=78.08  Aligned_cols=280  Identities=13%  Similarity=0.104  Sum_probs=170.6

Q ss_pred             CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccc---cccCCCCccceeeeccccccccccCCCeec
Q 016134           72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASST---VSDESGDKSTSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~---~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      +-.=.+|+.  .+.+|+-|+.|..++|-.+++......++...+.+.   .+..-||..+|..+. |+...+-+-+...+
T Consensus        16 kL~c~~WNk--e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT-WNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   16 KLHCAEWNK--ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT-WNENNQKLTTSDTS   92 (1189)
T ss_pred             eEEEEEEcc--cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE-eccccccccccCCC
Confidence            334467888  999999999999999999988765544433223322   345669999999999 99877777655555


Q ss_pred             CCCCCeEEEEEcCCCceEEE-EecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEE--EecCCCCcEEEEEEcC
Q 016134          149 GDECRFLHSWFCGEGLTMLA-KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF--SLDGPVGEVYSMVVAN  223 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~--~~~~~~~~v~~l~~~~  223 (394)
                      |    .|.||-+-++...-. .-.-.++.|.+++|+.||..++..-.||.|  =.++.++..  .+.+            
T Consensus        93 G----lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg------------  156 (1189)
T KOG2041|consen   93 G----LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG------------  156 (1189)
T ss_pred             c----eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch------------
Confidence            4    999998866522111 112346779999999999999998888872  222222111  0000            


Q ss_pred             CEEEEEecCCCCCCEEEEEecC--CeEEEEeCCCeEEEEeCCCC-------ceeEEE----cCCCCCcEEEEEc------
Q 016134          224 EMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTL-------EPVMTL----NDHTDAPMSLLCW------  284 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~-------~~~~~~----~~h~~~v~~l~~~------  284 (394)
                                  .....+.|+.  ..++.+-..|.+.+||.+..       .+.-..    ......|..+.|.      
T Consensus       157 ------------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~  224 (1189)
T KOG2041|consen  157 ------------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP  224 (1189)
T ss_pred             ------------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc
Confidence                        0011234442  33445556788899987531       121111    1122235566665      


Q ss_pred             ----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---------CeEEEEECCC
Q 016134          285 ----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---------NTVHLYELPS  351 (394)
Q Consensus       285 ----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---------g~I~iwd~~~  351 (394)
                          -..|+.|-..|.+.+-.-.+......+...   ..  .+...|+++|. +|+.++.|         +.|.+|.. -
T Consensus       225 v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~--~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp-~  297 (1189)
T KOG2041|consen  225 VPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MK--IVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSP-Y  297 (1189)
T ss_pred             CCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cE--eecceecCCCc-EEEEccCcccccCccccceEEEecc-c
Confidence                247888988998888755444333333221   12  22335799999 77777654         24555543 3


Q ss_pred             CceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          352 FMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       352 ~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ++.+..+.. ...|++++|-..| .++.+ .|+.|.+=++.
T Consensus       298 G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  298 GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence            556666655 5569999998888 55444 45555554443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=3.6e-05  Score=73.46  Aligned_cols=256  Identities=9%  Similarity=0.059  Sum_probs=142.1

Q ss_pred             ceeeeccccccccccCCCeecCC-------CCCeEEEEEcCCCceEEEEecc--cCCCe-EEEEecCCCCEEEEEeCCCc
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGD-------ECRFLHSWFCGEGLTMLAKLEG--HEKAV-SGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~-------~~~~i~iWd~~~~~~~~~~l~~--h~~~V-~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      .|.-+. ++||..||.+-+..-.       ....+.|||+.+| .+.+.+..  ....+ .-..||.|++++|--..|+.
T Consensus       251 ~Vq~id-fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG-~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~si  328 (698)
T KOG2314|consen  251 GVQFID-FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG-LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSI  328 (698)
T ss_pred             Cceeee-cCCccceEEEecCCccccCcccCCCceEEEEEcccc-chhcceeccCCCccccceEEeccCCceeEEeccceE
Confidence            455566 9999999987654321       2358999999998 56666654  22223 33689999999998888876


Q ss_pred             -eeecCCCcEEEe-cCCCCcEEEEEEcCCEEEEEecCC---------------CCC--------CE--EEEEec--CCeE
Q 016134          198 -AWNIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDG---------------HTR--------PV--TCLAVG--RSRL  248 (394)
Q Consensus       198 -vWd~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~~~---------------h~~--------~V--~~l~~~--~~~l  248 (394)
                       |++..+-..+.. .-....|....|+|...+.+.+..               ...        .|  ..|.|.  |++|
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence             677666443321 112334556666665222222210               000        11  112232  4444


Q ss_pred             EE----------EeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCC-CceeeEe
Q 016134          249 CS----------GSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATG-RGNLEAA  311 (394)
Q Consensus       249 ~s----------gs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~-~~~~~~~  311 (394)
                      +.          .+.--.+.|+.++... ++..+. -...|...+|.  |+.+++-+.   ..++.+|.+++ ......+
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence            32          1111234455554433 222222 34567777776  665554432   45788898873 2222222


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEE---eCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCC-----
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICA---CNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGA-----  381 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sg---s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~D-----  381 (394)
                      .....   ..+-.+.|+|.|+ +++.+   +..|.+.++|+.-......-.. ....+.+.|.|.| +++|++.-     
T Consensus       488 k~~dk---~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  488 KELDK---KFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKV  563 (698)
T ss_pred             hhhcc---cccceEEEcCCCc-EEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhcc
Confidence            22211   2222345799999 66654   4578899999885322222111 2346789999999 88888763     


Q ss_pred             -CeEEEEeCC
Q 016134          382 -GMLGVWKLL  390 (394)
Q Consensus       382 -g~I~vWd~~  390 (394)
                       .--+||+++
T Consensus       564 d~GYri~tfq  573 (698)
T KOG2314|consen  564 DNGYRIFTFQ  573 (698)
T ss_pred             ccceEEEEee
Confidence             344566543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=8.6e-05  Score=71.00  Aligned_cols=126  Identities=17%  Similarity=0.240  Sum_probs=84.7

Q ss_pred             CCCEEEEEec--CCe--EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCCC
Q 016134          235 TRPVTCLAVG--RSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATGR  305 (394)
Q Consensus       235 ~~~V~~l~~~--~~~--l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~~  305 (394)
                      .++|.++.|+  +..  ++-|-+--++.|||++ +.++..|.  .++-.++-|+  |++|+.++.   -|.|-|||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            5677777776  333  4445667899999997 67777764  4566778887  888888876   478999999886


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC------CCeEEEEECCCCceeEEEecCCcEEEEEECC
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN------DNTVHLYELPSFMERGRIFSKHEVRVIEIGP  371 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp  371 (394)
                      +.+..+....   .   ..+.|+|||+ +|+|+..      |+.++||+... ..+....-..+...+.|-|
T Consensus       347 K~i~~~~a~~---t---t~~eW~PdGe-~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  347 KLIAKFKAAN---T---TVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             hhccccccCC---c---eEEEEcCCCc-EEEEEeccccEEecCCeEEEEecC-ceeehhhhhHhHhheeeee
Confidence            6665554322   1   1234799999 6666643      78899999864 3333222222566667765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.35  E-value=0.00064  Score=66.07  Aligned_cols=205  Identities=10%  Similarity=-0.009  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCE-EEEEeCCC-c----eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDG-T----AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg-~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      .|.+=|.... .......+ . .+..-.|+|||+. ++..+.++ .    ++|+.+++...+....+......|+||   
T Consensus       170 ~l~~~d~dg~-~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPD---  243 (419)
T PRK04043        170 NIVLADYTLT-YQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKD---  243 (419)
T ss_pred             eEEEECCCCC-ceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCC---
Confidence            4444444332 33333333 3 7888999999985 66555553 3    578888877655444444444445544   


Q ss_pred             EEecCCCCCCEEEEEecCCeE-EEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEEE
Q 016134          228 AGAQDGHTRPVTCLAVGRSRL-CSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIKV  299 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~~~~l-~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~v  299 (394)
                                       ++.| ++.+  .+..|.++|+.+++. ..+..+........|+  |+.|+..+. .+  .|.+
T Consensus       244 -----------------G~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~  305 (419)
T PRK04043        244 -----------------GSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFM  305 (419)
T ss_pred             -----------------CCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEE
Confidence                             2222 2222  245788889887764 3444343323344566  666665553 33  5777


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEEEecCCcEEEEEECC
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGRIFSKHEVRVIEIGP  371 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp  371 (394)
                      .|+..++..+....  . ...    ..|+|+|+.++++....        ..|.+.|+.++... .+..........|+|
T Consensus       306 ~dl~~g~~~rlt~~--g-~~~----~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SP  377 (419)
T PRK04043        306 KKLNSGSVEQVVFH--G-KNN----SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSS  377 (419)
T ss_pred             EECCCCCeEeCccC--C-CcC----ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECC
Confidence            78876655333321  1 111    14699999555555433        36888898877543 333322333588999


Q ss_pred             CC-EEEEEe-CCCe--EEEEeCC
Q 016134          372 DK-LFFTGD-GAGM--LGVWKLL  390 (394)
Q Consensus       372 ~~-~l~tgs-~Dg~--I~vWd~~  390 (394)
                      || .|+... ..+.  +.+.+++
T Consensus       378 DG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        378 DGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCCEEEEEEccCCcEEEEEEecC
Confidence            99 444433 3333  4444443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.34  E-value=0.0015  Score=61.89  Aligned_cols=233  Identities=15%  Similarity=0.121  Sum_probs=132.0

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCC---ceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCC-cEE
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEG---LTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESS-AEF  207 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~-~~~  207 (394)
                      +++.+.+|-.....+...+.|..|++...   .+.+............++++|++++|+++.. ++.  ++++... ...
T Consensus        44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~  123 (345)
T PF10282_consen   44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG  123 (345)
T ss_dssp             E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred             EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence            55666665444333235668888887543   3444554434455667999999999999986 444  5888763 322


Q ss_pred             Ee---c-----------CCCCcEEEEEEcCC--EEEEEecC----------CCC--------------CCEEEEEec--C
Q 016134          208 SL---D-----------GPVGEVYSMVVANE--MLFAGAQD----------GHT--------------RPVTCLAVG--R  245 (394)
Q Consensus       208 ~~---~-----------~~~~~v~~l~~~~~--~l~~~~~~----------~h~--------------~~V~~l~~~--~  245 (394)
                      ..   .           ........+.++|+  .+++....          .+.              ..-..+.|+  +
T Consensus       124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg  203 (345)
T PF10282_consen  124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG  203 (345)
T ss_dssp             EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS
T ss_pred             eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc
Confidence            11   1           12355778899987  56554433          121              223345665  3


Q ss_pred             CeE-EEEeCCCeEEEEeCC--CCc--eeEEEcCC------CCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCC-CceeeE
Q 016134          246 SRL-CSGSMDNTIRVWELD--TLE--PVMTLNDH------TDAPMSLLCW--DQFLLSCS-LDHTIKVWFATG-RGNLEA  310 (394)
Q Consensus       246 ~~l-~sgs~Dg~V~iwd~~--~~~--~~~~~~~h------~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~-~~~~~~  310 (394)
                      +++ ++.-.+++|.++++.  +++  .++.+...      ......|.++  +++|+++. .++.|.+|++.. ...+..
T Consensus       204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~  283 (345)
T PF10282_consen  204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL  283 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred             CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence            455 444568899999987  333  23333221      1246677777  77776655 577899999943 223333


Q ss_pred             eeccc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC--CCCceeEEEe--cCCcEEEEEE
Q 016134          311 AYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL--PSFMERGRIF--SKHEVRVIEI  369 (394)
Q Consensus       311 ~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~--~~~~~~~~~~--~~~~v~~l~~  369 (394)
                      +.... ......  .+.++|+|+.++++.-.++.|.+|++  .++.+...-.  .-....||.|
T Consensus       284 ~~~~~~~G~~Pr--~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  284 VQTVPTGGKFPR--HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEESSSSEE--EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEeCCCCCcc--EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            22221 112222  33469999955555557789999976  4555443322  2455667665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.33  E-value=3.6e-06  Score=73.00  Aligned_cols=67  Identities=25%  Similarity=0.496  Sum_probs=56.7

Q ss_pred             EEEEEec---CCeEEEEeCCCeEEEEeCCCCc-eeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCC
Q 016134          238 VTCLAVG---RSRLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       238 V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~  304 (394)
                      |.+++-+   .+++++|+.||.+-+||.+... ++..++.|..+++.+.|+   +..|+++++||.+..||..+
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            6666665   4678999999999999998864 445668899999999999   67999999999999999764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.31  E-value=0.00041  Score=67.10  Aligned_cols=135  Identities=7%  Similarity=-0.041  Sum_probs=91.4

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC-cceEEE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED-NGVLAL  323 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~  323 (394)
                      ++.++.++.++.+..+|+.+++.+.+...  .....+...+..|+.++.++.+..+|..+++.+-........ .....+
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v  333 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL  333 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence            56778888899999999999987765432  222334556788888899999999999887654322211111 111111


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEE-EEECCCCEEEEEeCCCeEEEEeC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRV-IEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~-l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                          . ++  .|+.++.||.|+++|..+++.+..... ...+.+ ..+ .++.|+.++.||.|..+++
T Consensus       334 ----~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 ----Y-NG--YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ----E-CC--EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence                1 33  567788999999999999988877654 233332 222 2458889999999988875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.31  E-value=1.3e-05  Score=73.49  Aligned_cols=142  Identities=16%  Similarity=0.211  Sum_probs=90.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCcEEEEEc--CCEEEE---EeCCCcEEEEEeCCCceeeEeeccc
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEP----VMTLNDHTDAPMSLLCW--DQFLLS---CSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s---~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      +.+||++..+....+++++....    +.... -....+++.+.  ......   .+....+.+|.... .+...+.+|-
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~~lGhv  151 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEPILGHV  151 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcchhhhhh
Confidence            46677777777777777654332    22221 12223333333  222222   33444555565544 3334444444


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .-.    +.+.++||.+ +|+++..|..|+|-.++.-..+..+..  .+-|..++.-++..|++++.|++|++||+.+..
T Consensus       152 Sml----~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  152 SML----LDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhh----heeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence            322    2344699998 999999999999998887655555543  556999999988899999999999999998753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.30  E-value=2.1e-06  Score=53.16  Aligned_cols=36  Identities=33%  Similarity=0.620  Sum_probs=33.7

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eee
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWN  200 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd  200 (394)
                      +++.++++|++.|++|+|+|++++|++++.|+.  +||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            678999999999999999999999999999999  576

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.27  E-value=0.003  Score=59.66  Aligned_cols=135  Identities=11%  Similarity=0.032  Sum_probs=95.7

Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDN-TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      +|...|.-..+.  ++-++.|..|| .+-|||.++++. ..++..-+.|.++..+  |++++.+.....|.+.|+.++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            566666555554  56788999999 999999987664 4455667889999888  78899988888999999988765


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC----eEEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN----TVHLYELPSFMERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~  373 (394)
                      ...-..  ...  +.....|+|+++ ++|-+--+|    .|++||+..++....-.....=.+-+|.||+
T Consensus       436 ~~idkS--~~~--lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~  500 (668)
T COG4946         436 RLIDKS--EYG--LITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG  500 (668)
T ss_pred             eEeccc--ccc--eeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence            433222  222  333445799998 888775554    6899999987665444333344566788888

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.26  E-value=0.00054  Score=60.72  Aligned_cols=151  Identities=17%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC-------CCCCcEEEEEc--------CCEEEEEeCCCcEEEE
Q 016134          238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND-------HTDAPMSLLCW--------DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-------h~~~v~~l~~~--------~~~l~s~s~Dg~i~vw  300 (394)
                      =..++|+  +.+||.+...|+|++||+.. ..+..+..       -..+|..+.|.        ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            3456776  56899999999999999974 44444432       22456666665        1256666778888877


Q ss_pred             EeCCC--ce---eeEeeccc-CCcceEEEEeeECCCCCcEEEEEeCCCe----------EEEEECCCCcee---------
Q 016134          301 FATGR--GN---LEAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNT----------VHLYELPSFMER---------  355 (394)
Q Consensus       301 d~~~~--~~---~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~----------I~iwd~~~~~~~---------  355 (394)
                      -+..+  +.   ...+.... .+..+.+  +.|+|..+.+|+.|+....          +.-|.+-++.+-         
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~--~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINS--AVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeE--EEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            76322  11   11111111 1223333  3478888744444443322          455554221100         


Q ss_pred             --------------EE--Ee-----cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          356 --------------GR--IF-----SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       356 --------------~~--~~-----~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                                    ..  +.     ....|..|..+||| .||+...+|.|.+|++.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence                          00  00     14569999999999 999999999999999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.26  E-value=2.7e-06  Score=52.66  Aligned_cols=37  Identities=35%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 016134          265 LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       265 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd  301 (394)
                      ++++.++++|...|.+|+|+  +.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            36778888899999999888  67899999999999987

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.23  E-value=0.002  Score=68.52  Aligned_cols=148  Identities=14%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             EEEEEec--CCeEEEEeC---C---CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCC
Q 016134          238 VTCLAVG--RSRLCSGSM---D---NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATG  304 (394)
Q Consensus       238 V~~l~~~--~~~l~sgs~---D---g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~  304 (394)
                      -..|+|-  |.++|+.+-   .   ..+|||+-+ |+...+-+.-.+--.+++|-  |++||+...   ...|.+|. ++
T Consensus       212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rN  289 (928)
T PF04762_consen  212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RN  289 (928)
T ss_pred             ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cC
Confidence            3456775  678887764   2   589999965 66555544333334456665  888888765   34455665 34


Q ss_pred             CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEe--cCCcEEEEEECCCC--EEEEE
Q 016134          305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIF--SKHEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~--~~~~v~~l~~sp~~--~l~tg  378 (394)
                      +-....+...............|++++. +|+.--.|. |.+|-..+..  +.+.+.  ....+..+.|+|..  .|...
T Consensus       290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~  367 (928)
T PF04762_consen  290 GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL  367 (928)
T ss_pred             CcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence            4333333322111222224456899999 888766554 9999988864  233333  24446669999987  67777


Q ss_pred             eCCCeEEEEeC
Q 016134          379 DGAGMLGVWKL  389 (394)
Q Consensus       379 s~Dg~I~vWd~  389 (394)
                      ..+|.+..+++
T Consensus       368 t~~g~~~~~~~  378 (928)
T PF04762_consen  368 TSNGQYEIYDF  378 (928)
T ss_pred             ecCCcEEEEEE
Confidence            77677765543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=0.00036  Score=69.34  Aligned_cols=215  Identities=12%  Similarity=0.078  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCC------------CEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS------------DKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYS  218 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~------------~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~  218 (394)
                      .|.+-|..+- +.++.+.-|+..|+.+.|.|..            -+||++...|.  +||...+..+ .+.        
T Consensus        36 lV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~--------  106 (1062)
T KOG1912|consen   36 LVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS--------  106 (1062)
T ss_pred             eEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc--------
Confidence            4566666554 7889999999999999997631            13555555565  5998777654 232        


Q ss_pred             EEEcCCEEEEEecCCCCCCEEEEEec------CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEE
Q 016134          219 MVVANEMLFAGAQDGHTRPVTCLAVG------RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLL  289 (394)
Q Consensus       219 l~~~~~~l~~~~~~~h~~~V~~l~~~------~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~  289 (394)
                                    .|.+++..++|-      ...|+.-....+|.+|+..+|+.+.....-.....++.++   ...+.
T Consensus       107 --------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~  172 (1062)
T KOG1912|consen  107 --------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC  172 (1062)
T ss_pred             --------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence                          345566666662      2567777778899999999999887766444555567766   34444


Q ss_pred             EEeCCCcEEEEEeCC-------CceeeEeecccC-----------------Cc----ceEEEEeeECCCCCcEEEEEeCC
Q 016134          290 SCSLDHTIKVWFATG-------RGNLEAAYTHKE-----------------DN----GVLALGGLNDPDGKPVLICACND  341 (394)
Q Consensus       290 s~s~Dg~i~vwd~~~-------~~~~~~~~~~~~-----------------~~----~~~~~~~~~s~~g~~~l~sgs~d  341 (394)
                      .-+..|.+.+-+.-.       ++..+....|..                 +.    ..++...+|+|.-++.++. ...
T Consensus       173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~p  251 (1062)
T KOG1912|consen  173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFP  251 (1062)
T ss_pred             EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-Eec
Confidence            444556655554321       111111111111                 00    0112234567776655543 346


Q ss_pred             CeEEEEECCCCceeEEEec-CCcEEEEEECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134          342 NTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK---LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       342 g~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.|+|++-...+..+.- ...+.-+.|-|+.   .|++.-.||.+.+|--.+.
T Consensus       252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence            7899999998888877766 5557788888886   8999999999999976654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.18  E-value=0.00033  Score=74.33  Aligned_cols=225  Identities=11%  Similarity=0.047  Sum_probs=131.2

Q ss_pred             eeeccccccccccCCCeecCCC--CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecC
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDE--CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIE  202 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~--~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~  202 (394)
                      ..++ |.-+|.|+|....+-..  -+.||||+-+ + .+..+-+.-.+-=.+++|.|.|++||+...-..     +|.-.
T Consensus       213 ~~IS-WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN  289 (928)
T PF04762_consen  213 VRIS-WRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN  289 (928)
T ss_pred             eEEE-ECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence            3455 88999999988874443  5899999976 3 444444433444457899999999998876322     12221


Q ss_pred             CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcC-CCCC
Q 016134          203 SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLND-HTDA  277 (394)
Q Consensus       203 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~-h~~~  277 (394)
                      .-+.-.+.-                  -.+.....|..|.|+  ++.|+..-.|. |.+|-..+..  +.+.+.- ....
T Consensus       290 GLrhgeF~l------------------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~  350 (928)
T PF04762_consen  290 GLRHGEFTL------------------RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES  350 (928)
T ss_pred             CcEeeeEec------------------CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence            111111100                  011234567778886  56677766554 9999887643  3333332 2233


Q ss_pred             cEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC---
Q 016134          278 PMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS---  351 (394)
Q Consensus       278 v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~---  351 (394)
                      +..+.|+   ...|.....++.+..++..-.....  ...             .|+....+++- +..++.+-.++.   
T Consensus       351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s--~~~-------------~~~D~g~vaVI-DG~~lllTpf~~a~V  414 (928)
T PF04762_consen  351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS--PGS-------------SPNDNGTVAVI-DGNKLLLTPFRRAVV  414 (928)
T ss_pred             CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec--CCC-------------CccCceEEEEE-eCCeEEEecccccCC
Confidence            4558888   4566666666777777653211000  000             11111011111 123445544443   


Q ss_pred             --CceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          352 --FMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       352 --~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                        ......+.....|..++|++++ .+++-..||.|.+|.+..+
T Consensus       415 PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  415 PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence              3334455557899999999998 8999999999999986554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=1.1e-05  Score=79.01  Aligned_cols=153  Identities=15%  Similarity=0.145  Sum_probs=110.6

Q ss_pred             CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc---------------eeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE---------------PVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                      .....|+.|+  .+++++|+.||.++|..+.+..               .-+++++|...|.-+.|+  .+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567888998  6899999999999999886421               235778999999999999  56788888999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-E
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-L  374 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~  374 (394)
                      .|.+|-+-.+.-...+.....  ..+..+.+|+.+|. -+...-.||.|.+=.+........-........+.|++|. .
T Consensus        94 lIiVWmlykgsW~EEMiNnRn--KSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRN--KSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcC--ccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH
Confidence            999998877654443333332  23333445788888 6777778888887766654333222223345678899998 7


Q ss_pred             EEEEeCCCeEEEEeCC
Q 016134          375 FFTGDGAGMLGVWKLL  390 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~~  390 (394)
                      ++.+-..|.+.++|.+
T Consensus       171 ~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQ  186 (1189)
T ss_pred             HHhhhcCCcEEEeccc
Confidence            7777788999999854

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.10  E-value=0.0065  Score=54.55  Aligned_cols=198  Identities=14%  Similarity=0.082  Sum_probs=114.7

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEec-CCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALP-LRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s-~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      +.|+.|+..++......+.+    ...+++. +++.++++ ..++. ++|..+++...+...                 .
T Consensus        22 ~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~-----------------~   79 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADL-----------------P   79 (246)
T ss_dssp             TEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEE-----------------E
T ss_pred             CEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeec-----------------c
Confidence            38888998877433333322    7778887 56555544 44554 678888765432111                 0


Q ss_pred             cCC-CCCCEEEEEec--CCeEEEEeCC--------CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCc
Q 016134          231 QDG-HTRPVTCLAVG--RSRLCSGSMD--------NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHT  296 (394)
Q Consensus       231 ~~~-h~~~V~~l~~~--~~~l~sgs~D--------g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~  296 (394)
                      .+. .....+.++++  +++.++....        +.|..++.. ++...... .-.....++|+  ++.|+ +-+..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence            011 23345556665  4444443322        557777776 45433333 34556888888  56554 5667888


Q ss_pred             EEEEEeCCCce-e---eEeecccCCc-ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-CcEEEEEEC
Q 016134          297 IKVWFATGRGN-L---EAAYTHKEDN-GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-HEVRVIEIG  370 (394)
Q Consensus       297 i~vwd~~~~~~-~---~~~~~~~~~~-~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~s  370 (394)
                      |..+++..... +   ..+....... ..-.  ++++.+|. +.++....+.|.+++.. ++.+..+... ..+++++|.
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG--~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDG--LAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEE--EEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCc--ceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            99999864332 2   2222222211 1222  23588998 77777788999999988 7777777664 689999994


Q ss_pred             -CCC--EEEEE
Q 016134          371 -PDK--LFFTG  378 (394)
Q Consensus       371 -p~~--~l~tg  378 (394)
                       ++.  +++|.
T Consensus       234 g~~~~~L~vTt  244 (246)
T PF08450_consen  234 GPDGKTLYVTT  244 (246)
T ss_dssp             STTSSEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence             554  55554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.08  E-value=2.2e-05  Score=69.79  Aligned_cols=209  Identities=14%  Similarity=0.161  Sum_probs=122.2

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCce--eecCCCc-E-E----EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSA-E-F----SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~-~-~----~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      ....|+++.|...|.+|++|...|.|  +.-+... + .    .+.+|..+.-       +|-  +. .-...|..+.|-
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD-------YLk--Sl-eieEKin~I~w~   94 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD-------YLK--SL-EIEEKINAIEWF   94 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh-------hhh--hc-cHHHHhhheeee
Confidence            35679999999999999999988874  3322211 1 0    1222221110       000  00 123456677774


Q ss_pred             ----CCeEEEEeCCCeEEEEeCCCCc-------------------e-----------------------eEEE-cCCCCC
Q 016134          245 ----RSRLCSGSMDNTIRVWELDTLE-------------------P-----------------------VMTL-NDHTDA  277 (394)
Q Consensus       245 ----~~~l~sgs~Dg~V~iwd~~~~~-------------------~-----------------------~~~~-~~h~~~  277 (394)
                          .+.++..+.|.+|++|.+....                   +                       .+.. ..|..-
T Consensus        95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence                2457777889999999885320                   0                       0001 235556


Q ss_pred             cEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEe---ecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          278 PMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAA---YTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       278 v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      |.++.+. .+..+..+.|=+|.+|++.-......+   ..+... ..-+.....|+|....++.-.+..|.|++-|++..
T Consensus       175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            7777777 344444456788999988643322222   222111 11111233468877767777888999999999853


Q ss_pred             ceeE------E--Eec---------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          353 MERG------R--IFS---------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~------~--~~~---------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+..      .  +..         -..|..+.|+++| ++++-+ --+|+|||++..
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~  311 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMA  311 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccc
Confidence            2111      0  100         3358889999999 666554 468999998754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.06  E-value=0.0012  Score=58.75  Aligned_cols=146  Identities=11%  Similarity=0.004  Sum_probs=94.3

Q ss_pred             cCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEe-ecccCCcc-eE
Q 016134          244 GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAA-YTHKEDNG-VL  321 (394)
Q Consensus       244 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~~~-~~  321 (394)
                      .++.+++++.++.|..||..+++.+.++.............+..++.+..++.|..+|+.+++.+-.. ........ ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            57788888999999999999999988776522211223445777888888899999999998887763 32211111 11


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-c----------EEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-E----------VRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~----------v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      ...  ....+. .++.+..++.|..+|+++++.+....... .          +..-....++.++.++.++.+..+|+.
T Consensus       115 ~~~--~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  115 SSS--PAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             -SE--EEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred             ccC--ceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence            111  111255 67777779999999999999887775522 1          122223334477777777753333776


Q ss_pred             CC
Q 016134          391 AK  392 (394)
Q Consensus       391 ~~  392 (394)
                      +.
T Consensus       192 tg  193 (238)
T PF13360_consen  192 TG  193 (238)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.05  E-value=0.0037  Score=67.72  Aligned_cols=192  Identities=15%  Similarity=0.127  Sum_probs=107.1

Q ss_pred             CeEEEEEcCCCceEEEEeccc-----------------CCCeEEEEecCC-CCEEEEEeCCCce--eecCCCcEEEecCC
Q 016134          153 RFLHSWFCGEGLTMLAKLEGH-----------------EKAVSGIALPLR-SDKLFSGSRDGTA--WNIESSAEFSLDGP  212 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h-----------------~~~V~~l~~s~~-~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~  212 (394)
                      ..|+++|..++  .+.++.+-                 -..-.+++|+|+ +..+++.+.++.|  ||..++....+.+.
T Consensus       646 ~~Ir~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~  723 (1057)
T PLN02919        646 HALREIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD  723 (1057)
T ss_pred             ceEEEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence            47888888665  23333220                 112367999994 5555666666665  66666654332221


Q ss_pred             CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEc-------------C---
Q 016134          213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLN-------------D---  273 (394)
Q Consensus       213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~-------------~---  273 (394)
                      ....   ..... .   .....-.....|+++  ++ ++++-+.++.|++||++++.......             .   
T Consensus       724 G~~~---~~~g~-~---~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        724 GYER---NLNGS-S---GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             Cccc---cCCCC-c---cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            1000   00000 0   000111234567776  44 55666678999999998765321110             0   


Q ss_pred             -----CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC---------CcceEEEEeeECCCCCcEEEE
Q 016134          274 -----HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE---------DNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       274 -----h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~~l~s  337 (394)
                           .-.....++++  +.++++-..+++|++||..++...........         ........++++++|+ ++++
T Consensus       797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa  875 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA  875 (1057)
T ss_pred             chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE
Confidence                 01124567776  67788888899999999876544322211000         0000111234588998 8888


Q ss_pred             EeCCCeEEEEECCCCce
Q 016134          338 ACNDNTVHLYELPSFME  354 (394)
Q Consensus       338 gs~dg~I~iwd~~~~~~  354 (394)
                      -+.++.|++||+.++..
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            89999999999988754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.04  E-value=0.00021  Score=62.52  Aligned_cols=143  Identities=13%  Similarity=0.032  Sum_probs=96.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCcEEE---EEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPV-MTLNDHTDAPMSL---LCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV  320 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~h~~~v~~l---~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  320 (394)
                      ..+|+.|+.-|...+|...+.+-. +....|...|+-+   +-..-.+..++.|.++++.++..+......  |..... 
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~-  160 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLT-  160 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccc-
Confidence            357999999999999999875533 3333344433222   112445677888999999988654333222  222122 


Q ss_pred             EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee-EE-Eec--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMER-GR-IFS--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~-~~-~~~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                       .....++++++ ++++.+....|..|.+....+. .. ...  .+.=.+..|+... .+|++..||.+.|||+..-
T Consensus       161 -~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  161 -QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             -eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence             22345699999 8999999999999998765322 22 222  4456778899888 9999999999999998753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.00033  Score=64.64  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      +++.+..+ ++..+.+.+|...|.+|+|+|..+ +|..++.+..  |.|+++...+.                     +.
T Consensus       175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---------------------sy  232 (463)
T KOG1645|consen  175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---------------------SY  232 (463)
T ss_pred             eEEeccCC-cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---------------------he
Confidence            55555543 355667788999999999999877 6777787777  68888776553                     22


Q ss_pred             CCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCC
Q 016134          232 DGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDT  264 (394)
Q Consensus       232 ~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~  264 (394)
                      +.+ ..+++++|+   .++|+.|-..|.|.|||++.
T Consensus       233 ~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  233 IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            234 678888886   56799999999999999985

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.03  E-value=0.0052  Score=56.21  Aligned_cols=219  Identities=11%  Similarity=0.100  Sum_probs=122.9

Q ss_pred             eeeccccccccccCCCeecCCCCCeEEEEEcCC-C-ceEEEEecccCCC----------eEEEEecCCCCEEEEEe--CC
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-G-LTMLAKLEGHEKA----------VSGIALPLRSDKLFSGS--RD  195 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~-~~~~~~l~~h~~~----------V~~l~~s~~~~~l~sgs--~D  195 (394)
                      ..++ .++.+.++.++.+.+   +.|.++-+.. + ......+..|.+.          +....|.|++++|++..  .|
T Consensus        92 ~yvs-vd~~g~~vf~AnY~~---g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          92 CYVS-VDEDGRFVFVANYHS---GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             eEEE-ECCCCCEEEEEEccC---ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            5666 888999998887766   4899998854 2 1222233446666          89999999999999886  45


Q ss_pred             Cc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEE-eCCCeEEEEeCCCC-c---e
Q 016134          196 GT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSG-SMDNTIRVWELDTL-E---P  267 (394)
Q Consensus       196 g~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sg-s~Dg~V~iwd~~~~-~---~  267 (394)
                      +. +++++.+.........            +      .-...-.-|.|+  +++.+.. -.+++|-+|..... .   +
T Consensus       168 ri~~y~~~dg~L~~~~~~~------------v------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~  229 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAE------------V------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE  229 (346)
T ss_pred             eEEEEEcccCccccccccc------------c------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence            54 6888877654211100            0      011222334555  3444333 34889999988762 2   2


Q ss_pred             eEEEcC----CC--CCcEEEEEc--CCEEEEEeC-CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          268 VMTLND----HT--DAPMSLLCW--DQFLLSCSL-DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       268 ~~~~~~----h~--~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                      ++.+..    ..  ....+|..+  |++|.++.. ...|-+|.+....-...+...........-.+.+++.++.++++.
T Consensus       230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~  309 (346)
T COG2706         230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN  309 (346)
T ss_pred             eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence            333211    12  233444444  788887754 457888887654332222222211122122334689999444444


Q ss_pred             eCCCeEEEEECCCCceeEEEe----cCCcEEEEEEC
Q 016134          339 CNDNTVHLYELPSFMERGRIF----SKHEVRVIEIG  370 (394)
Q Consensus       339 s~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~s  370 (394)
                      -.+..|.+|......-.....    ......||.|.
T Consensus       310 q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         310 QKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            445679999776542222221    13345566654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=2.7e-05  Score=77.36  Aligned_cols=149  Identities=14%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             CCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          235 TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       235 ~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      ...+.|.++++..|+-|+.+|.|++++.. +.+ .+...|+..    .-.|.++++|+.||+|.|-.+-+.+...++.. 
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-  111 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-  111 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence            45677778889999999999999999976 344 444446544    33499999999999999998887766554432 


Q ss_pred             cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE---ecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI---FSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..+...+++...|+......+++|+.-| +.++.-.-.......   ...+.|.++.|..+ ++|-++.+| |+|||+.+
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~G-v~vyd~~~  188 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDG-VKVYDTPT  188 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCC-cEEEeccc
Confidence            3334555552222222333788899888 887764432222222   23778999999755 888888777 89999887


Q ss_pred             CC
Q 016134          392 KP  393 (394)
Q Consensus       392 ~~  393 (394)
                      +.
T Consensus       189 ~~  190 (846)
T KOG2066|consen  189 RQ  190 (846)
T ss_pred             cc
Confidence            64

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.6e-05  Score=71.03  Aligned_cols=224  Identities=11%  Similarity=0.138  Sum_probs=145.6

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcC--CCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeec
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNI  201 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~  201 (394)
                      -.|+.+  +.....++.+++.+|    .++.|...  .+.+.+..+..|...|.+++.+-++.++.|.+. |..  ++|+
T Consensus        10 d~i~hv--~~tka~fiiqASlDG----h~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen   10 DVITHV--FPTKAKFIIQASLDG----HKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ceeeeE--eeehhheEEeeecch----hhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            345555  455566777777777    89999864  456788888999999999999999999999777 776  5776


Q ss_pred             CCCcEE---Eec----------CCCCcEEEEEEcCC-----EEEEEecC---------CCCCCEEEEEec--CCeEEEEe
Q 016134          202 ESSAEF---SLD----------GPVGEVYSMVVANE-----MLFAGAQD---------GHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       202 ~~~~~~---~~~----------~~~~~v~~l~~~~~-----~l~~~~~~---------~h~~~V~~l~~~--~~~l~sgs  252 (394)
                      ++-...   .+.          .....+..++.+.-     .++-+..+         -|..+|.++.+.  ++.+++..
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            654432   111          12222223333211     11111111         588999999997  67788888


Q ss_pred             CCCeEEEEeCCC------CceeE---------EEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          253 MDNTIRVWELDT------LEPVM---------TLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       253 ~Dg~V~iwd~~~------~~~~~---------~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      ..|.|.-|....      .+...         .+........++.|+  +..+.+-+.|..|+++++++++.++.+....
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence            899999998872      11111         112234567788887  8889999999999999998876544332110


Q ss_pred             C-----------------------------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134          316 E-----------------------------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI  358 (394)
Q Consensus       316 ~-----------------------------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~  358 (394)
                      .                             .........+|+..++ +|+-++.=| |++.++.++.....+
T Consensus       244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~-flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN-FLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC-EEEeeccee-EEEEEeecCeEEEEe
Confidence            0                             0111222345787887 777676544 888888887665544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=0.0011  Score=63.61  Aligned_cols=249  Identities=12%  Similarity=0.080  Sum_probs=131.3

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----------
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----------  197 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----------  197 (394)
                      +-+-|. |+|.|.||++----|     |.+|--++ +..++.+ .|. .|.-+.|||..+||+|-+..-.          
T Consensus       212 Tetyv~-wSP~GTYL~t~Hk~G-----I~lWGG~~-f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  212 TETYVR-WSPKGTYLVTFHKQG-----IALWGGES-FDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeeEE-ecCCceEEEEEeccc-----eeeecCcc-HHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCc
Confidence            455666 999999999776665     77884322 2333333 344 5888999999999999886433          


Q ss_pred             ---eeecCCCcEEE-ecC--CCCcEE-EEEEcCC--EEEEEecC-----------------CCCCCEEEEEecC--CeEE
Q 016134          198 ---AWNIESSAEFS-LDG--PVGEVY-SMVVANE--MLFAGAQD-----------------GHTRPVTCLAVGR--SRLC  249 (394)
Q Consensus       198 ---vWd~~~~~~~~-~~~--~~~~v~-~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~~--~~l~  249 (394)
                         |||+.+|...+ +..  ....+. -..|+.+  +++.-..+                 -.-..|....|++  ++||
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence               79999998763 221  111122 2345544  22222222                 1123444445552  2332


Q ss_pred             EEeC-----CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe----------CCCcEEEEEeCCCceeeEee
Q 016134          250 SGSM-----DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS----------LDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       250 sgs~-----Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      -=..     -..+.+-.+-+++.+++-..|.-.-..+.|.  |++|..--          .-..+-|+.++.........
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            2111     1123344444444444433332222223333  55554321          11234455555433222222


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCC----ceeEEEecCCcEEEEEECCCC-EEEE---EeCCC
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSF----MERGRIFSKHEVRVIEIGPDK-LFFT---GDGAG  382 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~----~~~~~~~~~~~v~~l~~sp~~-~l~t---gs~Dg  382 (394)
                      ...  ..+  +...|.|.|..+.+..+.  ..++.+|.+++.    +++..+. ....+.+.|+|.| .++.   +|..|
T Consensus       443 elk--e~v--i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g  517 (698)
T KOG2314|consen  443 ELK--ESV--IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRG  517 (698)
T ss_pred             ecc--hhe--eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEeccccc
Confidence            222  123  344578998854443333  367899988742    2222222 4568899999999 4333   34578


Q ss_pred             eEEEEeCC
Q 016134          383 MLGVWKLL  390 (394)
Q Consensus       383 ~I~vWd~~  390 (394)
                      .+.++|++
T Consensus       518 ~l~F~D~~  525 (698)
T KOG2314|consen  518 DLEFYDTD  525 (698)
T ss_pred             ceEEEecc
Confidence            89999876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.97  E-value=0.0037  Score=60.78  Aligned_cols=188  Identities=9%  Similarity=-0.031  Sum_probs=100.8

Q ss_pred             eeccccccccc-cCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc--e--eecCCC
Q 016134          131 KTTLKNVCCHW-LLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT--A--WNIESS  204 (394)
Q Consensus       131 ~~~~~~~~~~~-~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~--v--Wd~~~~  204 (394)
                      ... |+|++.. ++-....+ ....|.++|+.++. ... +....+.+....|+|||+.|+ +.+.++.  |  +|+.++
T Consensus       192 ~p~-wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~-~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        192 FPK-WANKEQTAFYYTSYGE-RKPTLYKYNLYTGK-KEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             eEE-ECCCCCcEEEEEEccC-CCCEEEEEECCCCc-EEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            344 9999986 44334432 23479999997763 222 223455667788999998766 4444444  4  466666


Q ss_pred             cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEe-CCC--eEEEEeCCCCceeEEEcCCCCCcEEE
Q 016134          205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS-MDN--TIRVWELDTLEPVMTLNDHTDAPMSL  281 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs-~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l  281 (394)
                      +...+...........|+||                    ++.|+-.+ ..+  .|.+.|+.+++..+.... ....  .
T Consensus       268 ~~~~LT~~~~~d~~p~~SPD--------------------G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~--~  324 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVED--------------------DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNN--S  324 (419)
T ss_pred             cEEEcccCCCccCccEECCC--------------------CCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcC--c
Confidence            65544333221112233333                    34333333 222  677788887765333221 1122  2


Q ss_pred             EEc--CCEEEEEeCC---------CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEE
Q 016134          282 LCW--DQFLLSCSLD---------HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYE  348 (394)
Q Consensus       282 ~~~--~~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd  348 (394)
                      .|+  ++.|+..+..         ..|.+.|+..+... .+... ....    ...|+|||+.++++....+  .|.+.+
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~----~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQ----FPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcC----CeEECCCCCEEEEEEccCCcEEEEEEe
Confidence            454  7777666543         36788888766543 33222 1111    2347999995444443333  355666


Q ss_pred             CCC
Q 016134          349 LPS  351 (394)
Q Consensus       349 ~~~  351 (394)
                      +..
T Consensus       399 l~g  401 (419)
T PRK04043        399 LNY  401 (419)
T ss_pred             cCC
Confidence            654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.96  E-value=0.00013  Score=73.62  Aligned_cols=167  Identities=15%  Similarity=0.147  Sum_probs=109.5

Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                      +...|+.+. +..+...-....|+-|+-  +++.|.+|...|+|  -|..+.+.+.                     +.+
T Consensus       159 li~~Dl~~~-~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih---------------------t~~  214 (1118)
T KOG1275|consen  159 LIHIDLNTE-KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH---------------------TFD  214 (1118)
T ss_pred             eeeeecccc-eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee---------------------eee
Confidence            445566554 444444333444666654  67899999999984  6666665542                     334


Q ss_pred             CCCCCEEEEEecCCeEEEEe---------CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEE
Q 016134          233 GHTRPVTCLAVGRSRLCSGS---------MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       233 ~h~~~V~~l~~~~~~l~sgs---------~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vw  300 (394)
                      .|++.|.++...|++|++++         .|..|+|||++..+.+..+.-+.++ .-+.|.   ...+++++..|...+-
T Consensus       215 aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  215 AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence            77778887777788888876         3667999999987766665544443 333444   5678888999999999


Q ss_pred             EeCCCc-e-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          301 FATGRG-N-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       301 d~~~~~-~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      |..+.. + ......+.....+..+  .+++++. .++.|..+|.|.+|.-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~f--DiSsn~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAF--DISSNGD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeE--EecCCCc-eEEEecccCcEeeecC
Confidence            933221 1 2222223322334444  4688898 8999999999999973

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.95  E-value=0.0048  Score=59.67  Aligned_cols=138  Identities=8%  Similarity=-0.027  Sum_probs=86.7

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----------CcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-----------APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT  313 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-----------~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  313 (394)
                      ++.++.++.++.+..+|..+++.+.+......           ...+....+..++.++.++.+..+|+.+++.+-....
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~  284 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY  284 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence            34677788899999999999887655431110           0112223467788888899999999998876543321


Q ss_pred             ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CC-cEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KH-EVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~-~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..  ......      .+. .|..++.++.|..+|..+++.+-.... .. ...+..+. +++|+.++.||.|.+.|..+
T Consensus       285 ~~--~~~~~~------~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        285 GS--VNDFAV------DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINRED  354 (394)
T ss_pred             CC--ccCcEE------ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCC
Confidence            11  111111      233 456677899999999999877554322 11 12222222 45888889999999888765


Q ss_pred             C
Q 016134          392 K  392 (394)
Q Consensus       392 ~  392 (394)
                      .
T Consensus       355 G  355 (394)
T PRK11138        355 G  355 (394)
T ss_pred             C
Confidence            4

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.92  E-value=0.0014  Score=58.21  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             eECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          326 LNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      ..+|||+ +||+...+|.|.+|++++-........
T Consensus       236 SlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  236 SLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             EECCCCC-EEEEEEcCCeEEEEecCcchhhcccch
Confidence            4599999 999999999999999999877666554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.92  E-value=0.00056  Score=61.13  Aligned_cols=255  Identities=12%  Similarity=0.132  Sum_probs=150.5

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccC------------CCeEEEEecCCC--CEE
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHE------------KAVSGIALPLRS--DKL  189 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~------------~~V~~l~~s~~~--~~l  189 (394)
                      .|++|- +..-|.|++++-    +.|.|-++.-+..    .+...++++|.            ..|..|.|-.++  ..+
T Consensus        28 ~ItaVe-fd~tg~YlatGD----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          28 KITAVE-FDETGLYLATGD----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             eeeEEE-eccccceEeecC----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            566666 777788888654    4447878765433    34556677774            468889886543  346


Q ss_pred             EEEeCCCc--eeecCCCcEEEe----------cCCCCcEEEE------EEcC-CEEEEEec-----CCCCCCEEEEEec-
Q 016134          190 FSGSRDGT--AWNIESSAEFSL----------DGPVGEVYSM------VVAN-EMLFAGAQ-----DGHTRPVTCLAVG-  244 (394)
Q Consensus       190 ~sgs~Dg~--vWd~~~~~~~~~----------~~~~~~v~~l------~~~~-~~l~~~~~-----~~h~~~V~~l~~~-  244 (394)
                      +..+.|.+  +|.+........          ....+++.+.      ..+. +.++++..     ..|.--|.++.++ 
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            66667777  698865432100          0111222211      1111 13333322     3788889999997 


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCC-----CCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCcee-----
Q 016134          245 RSRLCSGSMDNTIRVWELDTLE---PVMTLNDHT-----DAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNL-----  308 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~-----~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~-----  308 (394)
                      ....+..+.|-.|.+|++.-..   .+..++.|.     ..|++..|+   -..+.-.+..|.|++-|+|.....     
T Consensus       183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            3444445678899999986432   233344443     457788888   355666677899999999843211     


Q ss_pred             -eEeec-------ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-eeEEEec-------------CCcE--
Q 016134          309 -EAAYT-------HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-ERGRIFS-------------KHEV--  364 (394)
Q Consensus       309 -~~~~~-------~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~-------------~~~v--  364 (394)
                       .....       ..+....+ -.+.|+++|+ ++++-. --+|+|||++..+ ++.++..             ...|  
T Consensus       263 lfe~~~D~v~~~ff~eivsSI-SD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSI-SDFKFSDNGR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhhccCcccchhHHHHhhhh-cceEEcCCCc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence             10000       00001111 1245789998 777554 4689999998653 4444421             1222  


Q ss_pred             -EEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          365 -RVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       365 -~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                       ..+.|+.|. .+++|+..+..-++-..
T Consensus       340 kFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         340 KFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eEEEEecCCcccccccccccceeeeccc
Confidence             346777777 88899988887777643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.88  E-value=0.01  Score=54.20  Aligned_cols=219  Identities=12%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeE--EEEecCCCCEEEEEeCCCc-------eeecC-CCcEE-EecCCCCcEEEEEEc
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVS--GIALPLRSDKLFSGSRDGT-------AWNIE-SSAEF-SLDGPVGEVYSMVVA  222 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~--~l~~s~~~~~l~sgs~Dg~-------vWd~~-~~~~~-~~~~~~~~v~~l~~~  222 (394)
                      +..+||..++ +..+.+....+.-.  --.|++||++|++.-.|-.       |||.. +.+.+ .+..+.-.-..+.+.
T Consensus        29 ~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~  107 (305)
T PF07433_consen   29 FALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM  107 (305)
T ss_pred             EEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence            6677888776 44445443332221  2579999999999877654       79998 33333 444444444456666


Q ss_pred             CC--EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEE--E--cCCCCCcEEEEEcC-CEEEEEe-CC
Q 016134          223 NE--MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMT--L--NDHTDAPMSLLCWD-QFLLSCS-LD  294 (394)
Q Consensus       223 ~~--~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~--~--~~h~~~v~~l~~~~-~~l~s~s-~D  294 (394)
                      ++  .|+++...-++.+=    .....|-...++-++...|..+++.+.+  +  ..|.-.|..+++.+ ..++.+. ..
T Consensus       108 pDG~tLvVANGGI~Thpd----~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  108 PDGETLVVANGGIETHPD----SGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ  183 (305)
T ss_pred             CCCCEEEEEcCCCccCcc----cCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence            66  45554332111110    0012344456667777778888887665  3  23666777777762 2222222 11


Q ss_pred             C-------cEEEEEeCCCceeeEeecccC---CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE
Q 016134          295 H-------TIKVWFATGRGNLEAAYTHKE---DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV  364 (394)
Q Consensus       295 g-------~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v  364 (394)
                      +       -|-+++  .++.+..+.....   ...-+.-++++++++..+.+|+-.-+.+.+||..+++.+..... ..+
T Consensus       184 g~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~  260 (305)
T PF07433_consen  184 GDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDA  260 (305)
T ss_pred             CCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-Cce
Confidence            1       122222  2222222211110   01111223345888885667777789999999999988766543 457


Q ss_pred             EEEEECCCCEEEEEeC
Q 016134          365 RVIEIGPDKLFFTGDG  380 (394)
Q Consensus       365 ~~l~~sp~~~l~tgs~  380 (394)
                      ..++..+++++++.+.
T Consensus       261 cGva~~~~~f~~ssG~  276 (305)
T PF07433_consen  261 CGVAPTDDGFLVSSGQ  276 (305)
T ss_pred             eeeeecCCceEEeCCC
Confidence            7777777775555544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.87  E-value=0.015  Score=51.17  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      +.+.-||--+.+.-=|..+++..             |..--...+.+.+  -.++.++.-+|++|    .+++.+.+++ 
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~-------------We~ilg~RiE~sa--~vvgdfVV~GCy~g----~lYfl~~~tG-   83 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLI-------------WEAILGVRIECSA--IVVGDFVVLGCYSG----GLYFLCVKTG-   83 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEE-------------eehhhCceeeeee--EEECCEEEEEEccC----cEEEEEecch-
Confidence            34455565555555555555542             4442222344333  23788899999999    7999999888 


Q ss_pred             eEEEEecccCCCeEE-EEecCCCCEEEEEeCCCce--eecCCCcEE
Q 016134          165 TMLAKLEGHEKAVSG-IALPLRSDKLFSGSRDGTA--WNIESSAEF  207 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~-l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~  207 (394)
                      ..+..+..- +.|.+ -...+++.++..++.|+.+  -|..+..++
T Consensus        84 s~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   84 SQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             hheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            444444332 22222 3346789999999999994  344444433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=9.4e-06  Score=81.22  Aligned_cols=191  Identities=14%  Similarity=0.148  Sum_probs=117.6

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL  241 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l  241 (394)
                      ++..+++..|+...+|++|+-+.++|+.|+..|.  ++++.+|....                     +.++|..+|+-+
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------s~ncH~SavT~v 1149 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------SVNCHQSAVTLV 1149 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---------------------cccccccccccc
Confidence            5667888899999999999999999999999998  58888887642                     223677777766


Q ss_pred             Eec--CCeEEE-EeCCC-eEEEEeCCC-CceeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          242 AVG--RSRLCS-GSMDN-TIRVWELDT-LEPVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       242 ~~~--~~~l~s-gs~Dg-~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      .-+  +..+++ ++... ...+|++.+ +...++|..    -.++.|++  +.-+.|.......+||+.+..++.++...
T Consensus      1150 ePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1150 EPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred             cccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc
Confidence            654  544333 33333 577898864 455555543    34666762  22233333356789999888777664432


Q ss_pred             cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ......-.-...|+|+.. +++   .||  .+||++..+.+..+..-.---.-.|+|.| .++.-++     |||+.
T Consensus      1226 ~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred             chhhhhhccccccCCCcc-eEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhH
Confidence            221111112334788887 554   355  46888877555544331111122478887 5555443     56654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.00037  Score=69.53  Aligned_cols=181  Identities=14%  Similarity=0.154  Sum_probs=118.0

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeC
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSM  253 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~  253 (394)
                      ...++|++++  +++|+-|..+|.|.-..-....                ...+     .|...    .-.|.++++||.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----------------~~~~-----~~s~~----~~~Gey~asCS~   91 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----------------KTNF-----DHSSS----ILEGEYVASCSD   91 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc----------------cccc-----ccccc----ccCCceEEEecC
Confidence            4567777775  5677777777765433322221                0000     12221    234899999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee
Q 016134          254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL  326 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  326 (394)
                      ||+|.|-.+-+.+...++. ...++.+++++       .+.+++|+..| +.++.-+--+.......+.....+.++.  
T Consensus        92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~--  167 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK--  167 (846)
T ss_pred             CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE--
Confidence            9999999998877766654 44688888887       35789999888 7777543222222233344445555553  


Q ss_pred             ECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-------cEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-------EVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-------~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      |  .|. ++|=++++| |+|||+.+.+.+..+.-.+       -...+.|.++..|+.|=.| +|+|..++
T Consensus       168 W--~g~-lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  168 W--RGN-LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             e--cCc-EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence            3  455 788777665 9999999988877765422       2456788888888887665 58887776

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.78  E-value=0.00024  Score=68.77  Aligned_cols=69  Identities=19%  Similarity=0.335  Sum_probs=55.3

Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.+++|+.+ .|+.|+.||+|.+||...+..... ...-.++.++|+|+| .+++|+.-|.+.+||+.-.
T Consensus       262 v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  262 VICCARSPSED-KLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ceEEecCcccc-eEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            34456799988 888899999999999987633322 334568899999999 9999999999999997543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.74  E-value=0.005  Score=56.14  Aligned_cols=156  Identities=13%  Similarity=0.103  Sum_probs=98.3

Q ss_pred             cccccccccCCCeec-CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-------Cc--------
Q 016134          134 LKNVCCHWLLGNCVR-GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-------GT--------  197 (394)
Q Consensus       134 ~~~~~~~~~~~~~~~-g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-------g~--------  197 (394)
                      +|++++.+|.+.-.+ ....|.|-|||...+++.+.++..|--.-..|.+.||++.|+.+-.-       |.        
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            399999998665433 35577999999998889999999998888889999999877766421       11        


Q ss_pred             -----eeecCCCcEEE---e--cCCCCcEEEEEEcCC-EEEEEecC-------------------------------CCC
Q 016134          198 -----AWNIESSAEFS---L--DGPVGEVYSMVVANE-MLFAGAQD-------------------------------GHT  235 (394)
Q Consensus       198 -----vWd~~~~~~~~---~--~~~~~~v~~l~~~~~-~l~~~~~~-------------------------------~h~  235 (394)
                           +-|..+++.+.   +  ..+...+..|++..+ .++.+...                               .-.
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~  216 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLN  216 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhC
Confidence                 24566777652   3  335567888888777 44444332                               123


Q ss_pred             CCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEE
Q 016134          236 RPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSC  291 (394)
Q Consensus       236 ~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~  291 (394)
                      ..|-+|+++  +.++ +|+=.-+.+.+||..+++.+.....  ..+..++.. +.++++.
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ss  274 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSS  274 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeC
Confidence            455566665  3333 4444556667777776666554432  234444444 3334443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0005  Score=64.34  Aligned_cols=198  Identities=13%  Similarity=0.107  Sum_probs=122.4

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeE
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRL  248 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l  248 (394)
                      |.+.|+.+.-. -.+++.+++.||.+  |.-..-.-+.+..                  ....|...|.+++.+  +-++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVK------------------hFraHL~~I~sl~~S~dg~L~   68 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVK------------------HFRAHLGVILSLAVSYDGWLF   68 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehh------------------hhHHHHHHHHhhhccccceeE
Confidence            77777776553 46799999999984  6543212221111                  111455566655554  6678


Q ss_pred             EEEeC-CCeEEEEeCCCCceeEEEc--CCCCCcEEEEEcCC---EEEE-EeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          249 CSGSM-DNTIRVWELDTLEPVMTLN--DHTDAPMSLLCWDQ---FLLS-CSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       249 ~sgs~-Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~---~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      .|.+. |..++++|+++...+.-++  -..+.+..+...|.   .|+. .-.++.+.++|-....+.........-..+.
T Consensus        69 ~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~  148 (558)
T KOG0882|consen   69 RSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK  148 (558)
T ss_pred             eeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence            88777 9999999998765543332  22233322222231   3333 3357899999977655433332222222233


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCC------CceeEEEe----------cCCcEEEEEECCCC-EEEEEeCCCeE
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPS------FMERGRIF----------SKHEVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~------~~~~~~~~----------~~~~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      .+  .+.+-+. .+++....|.|.-|....      .+....+.          .+....++.|+|++ .+.+-+.|..|
T Consensus       149 ~i--~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  149 KI--RYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             EE--Eeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence            22  3467777 778888889999998872      11111111          14568999999999 99999999999


Q ss_pred             EEEeCCCC
Q 016134          385 GVWKLLAK  392 (394)
Q Consensus       385 ~vWd~~~~  392 (394)
                      +++++.++
T Consensus       226 R~F~~KtG  233 (558)
T KOG0882|consen  226 RGFVFKTG  233 (558)
T ss_pred             EEEEeccc
Confidence            99998765

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=2.8e-05  Score=77.93  Aligned_cols=202  Identities=14%  Similarity=0.173  Sum_probs=133.3

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----ee
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AW  199 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vW  199 (394)
                      .+...-++.+ |+....+++.+...|    -|+++++.++ .......+|..+|+-+.=+.+|..+++.+.-..    +|
T Consensus      1099 d~~~~fTc~a-fs~~~~hL~vG~~~G----eik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1099 DETALFTCIA-FSGGTNHLAVGSHAG----EIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             ccccceeeEE-eecCCceEEeeeccc----eEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            3344556666 888888888888888    8999999988 566777899999999999999998887776555    79


Q ss_pred             ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCC-CCEEEEEecC--CeEEEEeCCCeEEEEeCCCCceeEEE-cC--
Q 016134          200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHT-RPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTL-ND--  273 (394)
Q Consensus       200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~-~~V~~l~~~~--~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~--  273 (394)
                      ++.+--..                         .|+ ..-.++.|+.  ..-+.|..-..+.|||++++.++.++ .+  
T Consensus      1173 ~~~s~~~~-------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1173 DASSTGGP-------------------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred             ccccccCc-------------------------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch
Confidence            98652111                         111 2334556653  22344444467899999998877663 22  


Q ss_pred             -CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          274 -HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       274 -h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                       .+..-....|+  ..+++   .||  .+||++..+.+..+....     ......|+|.|..+++ -     -.|||++
T Consensus      1228 ~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-----~~~~G~FHP~g~eVII-N-----SEIwD~R 1291 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-----DYGGGGFHPSGNEVII-N-----SEIWDMR 1291 (1516)
T ss_pred             hhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-----ecccccccCCCceEEe-e-----chhhhhH
Confidence             11222445555  33443   355  479999877666655433     3334558999985444 2     3689999


Q ss_pred             CCceeEEEecCCcEEEEEECCCC
Q 016134          351 SFMERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       351 ~~~~~~~~~~~~~v~~l~~sp~~  373 (394)
                      +++.+..++.-. -..+.|+..|
T Consensus      1292 TF~lLh~VP~Ld-qc~VtFNstG 1313 (1516)
T KOG1832|consen 1292 TFKLLHSVPSLD-QCAVTFNSTG 1313 (1516)
T ss_pred             HHHHHhcCcccc-ceEEEeccCc
Confidence            998877765422 2345666666

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.65  E-value=0.021  Score=51.19  Aligned_cols=147  Identities=15%  Similarity=-0.035  Sum_probs=91.4

Q ss_pred             EEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          240 CLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       240 ~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      ++.|+   +.++++--..+.|..||..+++... +....  ...+.+.  +..|+.+..++ +.++|+.+++........
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            34565   3456666678999999998766533 33222  5666666  56777776654 556698776443333322


Q ss_pred             cCC-cceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCe
Q 016134          315 KED-NGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGM  383 (394)
Q Consensus       315 ~~~-~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~  383 (394)
                      ... .....-.+.++++|. +.++....        +.|..++.. ++.......-...+.|+|+|++  ++++-+..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence            121 233333456799998 67765543        557777777 5544444445678999999999  4557778888


Q ss_pred             EEEEeCCCC
Q 016134          384 LGVWKLLAK  392 (394)
Q Consensus       384 I~vWd~~~~  392 (394)
                      |..+++..+
T Consensus       158 i~~~~~~~~  166 (246)
T PF08450_consen  158 IWRFDLDAD  166 (246)
T ss_dssp             EEEEEEETT
T ss_pred             eEEEecccc
Confidence            988888643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0056  Score=46.92  Aligned_cols=93  Identities=27%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEE
Q 016134          246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG  324 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  324 (394)
                      +.|++|+.|..||||+-.  +.+.++.. .+.|+++... +..|+.+-.+|+|-+|+-..  .+-...   ....+.++.
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiK---SK~~~~~~~   87 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIK---SKNQVTSMA   87 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeec---cCCCeEEEE
Confidence            679999999999999754  67777764 4677888776 78899999999999997522  111222   222233332


Q ss_pred             e-eECCCCCcEEEEEeCCCeEEE
Q 016134          325 G-LNDPDGKPVLICACNDNTVHL  346 (394)
Q Consensus       325 ~-~~s~~g~~~l~sgs~dg~I~i  346 (394)
                      . ..+.+|..-|++|-.+|.|-+
T Consensus        88 ~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   88 FYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEcCCCCCceEEEEEecCCeEEe
Confidence            1 234456667899988988753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.0023  Score=63.90  Aligned_cols=148  Identities=14%  Similarity=0.100  Sum_probs=108.1

Q ss_pred             EEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--------------CCEEEEEeCCCcEEEEEe
Q 016134          238 VTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--------------DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       238 V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--------------~~~l~s~s~Dg~i~vwd~  302 (394)
                      -.++.|+ +.+|+-|+. ..|.+-|.++.+.++.++.|...|+.+.|.              .-+|+++...|.|.+||.
T Consensus        18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            4566777 567777764 679999999999999999999999999986              125777778899999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE-EEEEECCCC--EEEEE
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV-RVIEIGPDK--LFFTG  378 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v-~~l~~sp~~--~l~tg  378 (394)
                      .....+..+..+......+  ++.+.. +.+.+|++-....+|.+|+..+|+..-.....+.+ .|+.+.|-.  .+..-
T Consensus        97 ~~~s~~~~l~~~~~~~qdl--~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   97 VLASVINWLSHSNDSVQDL--CWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             hhhhhhhhhcCCCcchhhe--eeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            8877666666655554433  444443 34357777777899999999999988777665554 558888854  44444


Q ss_pred             eCCCeEEEEe
Q 016134          379 DGAGMLGVWK  388 (394)
Q Consensus       379 s~Dg~I~vWd  388 (394)
                      +..|.|.+-+
T Consensus       175 ~s~g~vl~~~  184 (1062)
T KOG1912|consen  175 GSKGFVLSCK  184 (1062)
T ss_pred             ccCceEEEEe
Confidence            4555555544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.50  E-value=0.0024  Score=65.68  Aligned_cols=138  Identities=14%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCC-cEEEEEc-------CCEEEEEeCCCcEEEEEeCCCce-eeEeeccc--C
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSLLCW-------DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHK--E  316 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~-------~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~--~  316 (394)
                      |........|+-.|++.|+.+..++.|... |..++..       +...+.|-.++.|..||.|.... +.....+.  .
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            333445688999999999999999887654 6777654       33456677788999999986532 21111111  1


Q ss_pred             CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       317 ~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ...-.+  ++-+.+|  .||+|+.+|.||+||--.......++. ..+|..|..+.|| +|++.+ +..|.+++..
T Consensus       577 ~~~Fs~--~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  577 KNNFSC--FATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCCceE--EEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            111122  2235555  699999999999999543232333434 7899999999999 443333 4567777653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.49  E-value=0.009  Score=45.78  Aligned_cols=98  Identities=22%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             cEEEEEc------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          278 PMSLLCW------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       278 v~~l~~~------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      |++|++.      .+.|++|+.|..||+|+-  .+.+..+...   ..+..++  .... . .++.+-.+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---~~v~~L~--~~~~-~-~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET---DKVTSLC--SLGG-G-RFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc---cceEEEE--EcCC-C-EEEEEecCCEEEEEeCcc
Confidence            5566654      268999999999999974  3444444333   2333332  1222 3 688899999999997643


Q ss_pred             CceeEEEecCCcEEEEEECC---CC--EEEEEeCCCeEEE
Q 016134          352 FMERGRIFSKHEVRVIEIGP---DK--LFFTGDGAGMLGV  386 (394)
Q Consensus       352 ~~~~~~~~~~~~v~~l~~sp---~~--~l~tgs~Dg~I~v  386 (394)
                        .+-.+..++.++++++..   ||  .|++|-.+|.|-+
T Consensus        73 --RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 --RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             --eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence              444455566677776543   44  8999999998753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.46  E-value=0.088  Score=50.64  Aligned_cols=215  Identities=13%  Similarity=0.160  Sum_probs=115.4

Q ss_pred             CeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE----------------ecCCCCcEEEEEE--cCC----EEEEEec
Q 016134          176 AVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS----------------LDGPVGEVYSMVV--ANE----MLFAGAQ  231 (394)
Q Consensus       176 ~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~----------------~~~~~~~v~~l~~--~~~----~l~~~~~  231 (394)
                      .|+.+.|.++..-|+.+...|.  ||.+...+...                .....+.+..+.-  .+.    ++-..-.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999889999999998  45544332221                0011233333321  011    2222223


Q ss_pred             CCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEE--cC------CCCCcEEEEEc-----C-----CEEEEEe
Q 016134          232 DGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTL--ND------HTDAPMSLLCW-----D-----QFLLSCS  292 (394)
Q Consensus       232 ~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~------h~~~v~~l~~~-----~-----~~l~s~s  292 (394)
                      +...++|++++.+ =.+++.|..+|.+.|.|+|....+..-  ..      ....|+++.|.     +     -.|++|.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            3458899999997 579999999999999999887766552  12      23467888886     1     3788889


Q ss_pred             CCCcEEEEEeCC-C-c-eeeEeecc--cCCcceEEEEeeECCCC-------------------CcEEEEEeCCCeEEEEE
Q 016134          293 LDHTIKVWFATG-R-G-NLEAAYTH--KEDNGVLALGGLNDPDG-------------------KPVLICACNDNTVHLYE  348 (394)
Q Consensus       293 ~Dg~i~vwd~~~-~-~-~~~~~~~~--~~~~~~~~~~~~~s~~g-------------------~~~l~sgs~dg~I~iwd  348 (394)
                      ..|.+.+|.+.- . . -...+...  .....+..+.......|                   ..+++. ..+..++|+.
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~  241 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFK  241 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEe
Confidence            999999998751 1 1 11111111  11222333222111111                   113443 3467899999


Q ss_pred             CCCCceeEEEecCC-cEEEEEEC-----CCC-EEEEEeCCCeEEEEeCCC
Q 016134          349 LPSFMERGRIFSKH-EVRVIEIG-----PDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       349 ~~~~~~~~~~~~~~-~v~~l~~s-----p~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..+.+...+..... ....+.+-     ..+ .|++-..+|.|+++.+..
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            99887776666321 23334442     234 888888999999998753

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.43  E-value=0.0077  Score=59.70  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ....|+-|+.-+.+.++|+.++.....++        +|   ..+.+.... .++...++|.++.+|    .|-++.+..
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~--------~~---~~~~~~~~~-vs~~e~lvAagt~~g----~V~v~ql~~  107 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKN--------EG---ATGITCVRS-VSSVEYLVAAGTASG----RVSVFQLNK  107 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccc--------cC---ccceEEEEE-ecchhHhhhhhcCCc----eEEeehhhc
Confidence            55578889999999999999988665443        23   222233333 778888888888888    788887754


Q ss_pred             CceEEEEe-----cccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134          163 GLTMLAKL-----EGHEKAVSGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       163 ~~~~~~~l-----~~h~~~V~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      +...-..+     +.|...|++++|++++..|++|...|+
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk  147 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK  147 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecccccEEeecCCCce
Confidence            32211111     337789999999999999999999998

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.40  E-value=0.021  Score=55.70  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=56.7

Q ss_pred             CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                      .....|.+.+++  .+.|+.|+.||+|.+||...+...  +....-.++.++|+  |.++++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            566788888887  678999999999999998765332  22344567888998  779999999999999998643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0057  Score=61.88  Aligned_cols=154  Identities=16%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-cEEEEEcC--CEEEEEeCCCc-----EEEEEeCCC---
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSLLCWD--QFLLSCSLDHT-----IKVWFATGR---  305 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~--~~l~s~s~Dg~-----i~vwd~~~~---  305 (394)
                      .|.|+.-++..++.|+.||.|.+++- ..+.++.|+++... |..+....  .+|++.++|..     |++||+..-   
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            67777767889999999999988874 35666888887776 44443333  48888887764     999998642   


Q ss_pred             ---ceee--EeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECC---CCceeE--EEecCCcEEEEEECCCC-
Q 016134          306 ---GNLE--AAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELP---SFMERG--RIFSKHEVRVIEIGPDK-  373 (394)
Q Consensus       306 ---~~~~--~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~---~~~~~~--~~~~~~~v~~l~~sp~~-  373 (394)
                         .++.  .+..+..+ .....-..+.+.+-+ .+|+|-.+|.|..+.-.   ......  ......+|+.+++..++ 
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence               2221  22222222 111111122355555 89999999999998532   111222  22337789999999998 


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q 016134          374 LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       374 ~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .++-...-..|.+|.+..+
T Consensus       185 s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  185 SVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             eeEEEEecceeEEEEecCC
Confidence            3233333456888887643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.39  E-value=0.092  Score=52.32  Aligned_cols=122  Identities=7%  Similarity=-0.008  Sum_probs=73.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEE------------------eCCCcEEEEEeCCCcee
Q 016134          247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC------------------SLDHTIKVWFATGRGNL  308 (394)
Q Consensus       247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~------------------s~Dg~i~vwd~~~~~~~  308 (394)
                      .++.++.+|.+...|.++++.+...+....   .+......++..                  ..++.|.-.|+.+++.+
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~  379 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV  379 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeecc---ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence            578888999999999999998876542100   111122222221                  23577888888887665


Q ss_pred             eEeecccC--------Cc--ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE--EEECCCC--E
Q 016134          309 EAAYTHKE--------DN--GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGPDK--L  374 (394)
Q Consensus       309 ~~~~~~~~--------~~--~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~sp~~--~  374 (394)
                      -.......        ..  ....+      .+. +|+.++.||.|+.+|..+++++-+......+.+  +.+..++  +
T Consensus       380 W~~~~~~~~~~~~~g~~~~~~~~~~------~g~-~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y  452 (488)
T cd00216         380 WEKREGTIRDSWNIGFPHWGGSLAT------AGN-LVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQY  452 (488)
T ss_pred             eEeeCCccccccccCCcccCcceEe------cCC-eEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence            44432210        00  11111      334 677788999999999999999888766444332  2234466  4


Q ss_pred             EEEE
Q 016134          375 FFTG  378 (394)
Q Consensus       375 l~tg  378 (394)
                      +++.
T Consensus       453 v~~~  456 (488)
T cd00216         453 VGVM  456 (488)
T ss_pred             EEEE
Confidence            4443

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.35  E-value=0.061  Score=56.78  Aligned_cols=144  Identities=10%  Similarity=0.041  Sum_probs=76.8

Q ss_pred             EEEec--CCeEEE-----EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe---CCCcEEEEEeCCCce
Q 016134          240 CLAVG--RSRLCS-----GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS---LDHTIKVWFATGRGN  307 (394)
Q Consensus       240 ~l~~~--~~~l~s-----gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s---~Dg~i~vwd~~~~~~  307 (394)
                      .|.|-  ++++++     ...-..|+|||.+ +.+-.+-+...+.-.+++|-  |..+++-.   .|+.|.+|.-+ +..
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~  277 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLR  277 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Ccc
Confidence            46775  667776     2233899999977 44322222222223455554  67777653   35678888743 222


Q ss_pred             eeEeec--ccCCcceEEEEeeECCCCCcEEEE---EeCCCeEEEEECCCCce--eEEEecCCcEEEEEECCCC--EEEEE
Q 016134          308 LEAAYT--HKEDNGVLALGGLNDPDGKPVLIC---ACNDNTVHLYELPSFME--RGRIFSKHEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       308 ~~~~~~--~~~~~~~~~~~~~~s~~g~~~l~s---gs~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~sp~~--~l~tg  378 (394)
                      -..+..  ......+.  ...|+.++. +|++   ......|++|-+.+..-  ...+.-..... +.|+|-.  .|..-
T Consensus       278 hg~f~l~~p~de~~ve--~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~  353 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVE--ELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVL  353 (1265)
T ss_pred             ccccccCCcccccchh--eeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEE
Confidence            111111  11111122  334688888 7776   44455599999887632  22222222222 7888865  44444


Q ss_pred             eCCCeEEEEeC
Q 016134          379 DGAGMLGVWKL  389 (394)
Q Consensus       379 s~Dg~I~vWd~  389 (394)
                      ..+|...++++
T Consensus       354 ~~sG~~~v~~~  364 (1265)
T KOG1920|consen  354 RESGQRLVRDF  364 (1265)
T ss_pred             ecCCcEEEEEE
Confidence            46776666554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.33  E-value=0.029  Score=49.40  Aligned_cols=134  Identities=11%  Similarity=0.044  Sum_probs=94.3

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL  323 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  323 (394)
                      ..+++.|+..+.+.--|..+++.+.+-. -...|.+-+.- +++++.|+..+.+.+.+..++.....+..... +.+.+.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh-hccceE
Confidence            4678889999999999999988765432 22344433333 89999999999999999999877766655433 444444


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEE-EEEECC-CCEEEEEeCCCeE
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVR-VIEIGP-DKLFFTGDGAGML  384 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~-~l~~sp-~~~l~tgs~Dg~I  384 (394)
                         .++++. ++.+|+.|++.+..|.++...+.+....+.+. +-++.| ++.|+.+...|.|
T Consensus       101 ---~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  101 ---CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             ---EcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence               278888 99999999999999999988887766544432 334445 3434444444444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.28  E-value=0.16  Score=47.55  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc-eeEEE-cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCC-ceee
Q 016134          233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE-PVMTL-NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGR-GNLE  309 (394)
Q Consensus       233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~-~~~~~-~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~-~~~~  309 (394)
                      ...++|++++--+++|+.+. .+.|.+|++...+ .+..- ......+.++...+++++.+.....+.++..... ..+.
T Consensus        86 ~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~  164 (321)
T PF03178_consen   86 EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLI  164 (321)
T ss_dssp             EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred             eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEE
Confidence            34677888876666655544 5899999998776 33322 2233477888888999999999899998866543 2233


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-------Cc----eeEEEecCCcEEEE---EECCC--C
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-------FM----ERGRIFSKHEVRVI---EIGPD--K  373 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-------~~----~~~~~~~~~~v~~l---~~sp~--~  373 (394)
                      .+.....+..+.+.  .+-++++ .++++..+|.|.++....       +.    ....+.....|+++   .+.|.  +
T Consensus       165 ~va~d~~~~~v~~~--~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~  241 (321)
T PF03178_consen  165 LVARDYQPRWVTAA--EFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGS  241 (321)
T ss_dssp             EEEEESS-BEEEEE--EEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSS
T ss_pred             EEEecCCCccEEEE--EEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCC
Confidence            33333333333433  3444555 788899999999998763       12    22333337778888   55552  2


Q ss_pred             -------EEEEEeCCCeEEE
Q 016134          374 -------LFFTGDGAGMLGV  386 (394)
Q Consensus       374 -------~l~tgs~Dg~I~v  386 (394)
                             .++.++.+|.|-+
T Consensus       242 ~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  242 SESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             S-TTEEEEEEEEETTS-EEE
T ss_pred             CcccccceEEEEecCCEEEE
Confidence                   3888889998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.25  E-value=0.021  Score=54.61  Aligned_cols=203  Identities=14%  Similarity=0.129  Sum_probs=115.0

Q ss_pred             EEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecCC
Q 016134          157 SWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDG  233 (394)
Q Consensus       157 iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~~  233 (394)
                      .|...+. ..-..+..-.-++..++|||.|.+|++....+. +|.-.....+... ....|+.+.|+|.  +|.+=....
T Consensus        16 f~~~~s~-~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~~~V~~~~fSP~~kYL~tw~~~p   93 (561)
T COG5354          16 FWNSQSE-VIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RHPDVKYLDFSPNEKYLVTWSREP   93 (561)
T ss_pred             eecCccc-cccccccccCcchhheeecCcchheehhhccceEEccccchhheeee-ecCCceecccCcccceeeeeccCC
Confidence            3444333 333444446778999999999999999998887 7888776643222 2346778888887  333322221


Q ss_pred             CCCCEEEEEecC-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--cE-EEEEc--CCEEEEEeCCCcEEEEEeCCCce
Q 016134          234 HTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA--PM-SLLCW--DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       234 h~~~V~~l~~~~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~--v~-~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      .    .    ++ ..+.=-..+..+.+||+.++..+..+.....+  .+ -+.|+  +.++|-. ....+.|+++...-.
T Consensus        94 i----~----~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~  164 (561)
T COG5354          94 I----I----EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE  164 (561)
T ss_pred             c----c----ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc
Confidence            1    0    10 00111123447999999999999998876554  33 34444  5554443 345789999732111


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCc-EEEE-----EeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKP-VLIC-----ACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK  373 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~-~l~s-----gs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~  373 (394)
                      ...+.... ...+..+  .++|.+.. .|+.     .+.+++++||.+.....+.+..- .-.=..+.|.+.|
T Consensus       165 ~~p~~~lr-~~gi~dF--sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g  234 (561)
T COG5354         165 EHPFKNLR-PVGILDF--SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG  234 (561)
T ss_pred             cCchhhcc-ccceeeE--EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence            11111111 1233333  24555321 2332     46688999999997765544322 2222356788877

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0025  Score=59.03  Aligned_cols=75  Identities=16%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCc
Q 016134          233 GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       233 ~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                      +|...|.+++|+   ..++..++.+.+|+|.|+++..++..+..+ ..+++++|+   ..+|..|-..|.|.+||++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            677889999997   357899999999999999999999988877 889999998   5688888899999999999765


Q ss_pred             ee
Q 016134          307 NL  308 (394)
Q Consensus       307 ~~  308 (394)
                      ..
T Consensus       270 ~~  271 (463)
T KOG1645|consen  270 GP  271 (463)
T ss_pred             ch
Confidence            43

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.20  E-value=0.1  Score=52.30  Aligned_cols=100  Identities=13%  Similarity=0.035  Sum_probs=72.3

Q ss_pred             CCEEEEEeCCCcEEEEEeCC-----CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-----
Q 016134          285 DQFLLSCSLDHTIKVWFATG-----RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-----  354 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-----  354 (394)
                      |++...  .+++|.+.|.++     .+.+..+.....+.. +.    ++|||+++++++..+.+|.|+|+.+.+.     
T Consensus       288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG-V~----vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHG-VN----TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccc-eE----ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            555444  367899999987     344555554444433 22    4999998888888899999999998653     


Q ss_pred             -------eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          355 -------RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       355 -------~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                             ..+..........+|.++| .+.|-.-|.+|..|++..
T Consensus       361 ~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                   3333334456678899998 777788899999999875

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.16  E-value=0.023  Score=53.27  Aligned_cols=130  Identities=13%  Similarity=0.071  Sum_probs=85.2

Q ss_pred             CeEEEEeCCCC-----c--eeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeE
Q 016134          255 NTIRVWELDTL-----E--PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN  327 (394)
Q Consensus       255 g~V~iwd~~~~-----~--~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (394)
                      |.|.++++...     +  .+... ...++|++++..+..|+.+. .+.|.+|++...+.+...........+.++.   
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~---  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS---  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE---
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe---
Confidence            88999998873     2  22222 35788999998866655554 5899999998877344443444444555553   


Q ss_pred             CCCCCcEEEEEeCCCeEEEEECCCC-ceeEEEe---cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          328 DPDGKPVLICACNDNTVHLYELPSF-MERGRIF---SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       328 s~~g~~~l~sgs~dg~I~iwd~~~~-~~~~~~~---~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                       ..+. +++.|..-..|.++..... ..+..+.   ....++++.+-+++ .++.+..+|.|.++....
T Consensus       137 -~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  137 -VFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -EETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             -cccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence             2244 7888888888888865542 2222222   25568999998776 999999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.13  E-value=0.055  Score=52.02  Aligned_cols=195  Identities=13%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             CCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          162 EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       162 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      .++.+...++..+++|++++.+ |=-+++.|..+|.  |-|++....+.......     .+        ........|+
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-----~~--------~~~~~~~~vt  139 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-----SF--------LSKSSSSYVT  139 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------T-SS----EE
T ss_pred             cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-----cc--------cccccccCee
Confidence            3567888888889999999997 5569999999998  68997766552111000     00        0002234455


Q ss_pred             EEEec-----C-----CeEEEEeCCCeEEEEeCC--C-Cc----eeEEEcCCCCCcEEEEEc------------------
Q 016134          240 CLAVG-----R-----SRLCSGSMDNTIRVWELD--T-LE----PVMTLNDHTDAPMSLLCW------------------  284 (394)
Q Consensus       240 ~l~~~-----~-----~~l~sgs~Dg~V~iwd~~--~-~~----~~~~~~~h~~~v~~l~~~------------------  284 (394)
                      ++.|.     +     -.+++|...|.+.+|.+-  . +.    .......+.++|..+...                  
T Consensus       140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l  219 (395)
T PF08596_consen  140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL  219 (395)
T ss_dssp             EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred             EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence            56653     1     258889999999999774  1 11    112222456676666532                  


Q ss_pred             ------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeE--CCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          285 ------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN--DPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       285 ------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                            ..+++. ..+..+|++...+.+...+..  .....+....+..  +..+...|++-..+|.|++|.++..+++.
T Consensus       220 ~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~  296 (395)
T PF08596_consen  220 SKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK  296 (395)
T ss_dssp             GGT----EEEEE-E-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred             ccCCCcCcEEEE-EcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence                  024444 446789999988766655444  2212222222110  11233378888999999999999998887


Q ss_pred             EEecC-----CcEEEEEECCCC
Q 016134          357 RIFSK-----HEVRVIEIGPDK  373 (394)
Q Consensus       357 ~~~~~-----~~v~~l~~sp~~  373 (394)
                      .+...     ..+....++++|
T Consensus       297 ~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  297 SVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             EEE-SS---HHHHTT-EE-TTS
T ss_pred             cccCCCccccccccccEECCCC
Confidence            76652     124556678888

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.13  E-value=0.25  Score=49.25  Aligned_cols=139  Identities=12%  Similarity=0.052  Sum_probs=83.8

Q ss_pred             CCeEEEEeCCC------------------eEEEEeCCCCceeEEEcCCCCCc-----------EEEE-EcCC---EEEEE
Q 016134          245 RSRLCSGSMDN------------------TIRVWELDTLEPVMTLNDHTDAP-----------MSLL-CWDQ---FLLSC  291 (394)
Q Consensus       245 ~~~l~sgs~Dg------------------~V~iwd~~~~~~~~~~~~h~~~v-----------~~l~-~~~~---~l~s~  291 (394)
                      +++++.++.++                  .|.-+|+++++.+-.++.-....           ..+. ..+.   .++.+
T Consensus       228 ~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g  307 (488)
T cd00216         228 TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA  307 (488)
T ss_pred             CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE
Confidence            45677777665                  78999999999887764211111           1111 1232   57778


Q ss_pred             eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-----------------EeCCCeEEEEECCCCce
Q 016134          292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-----------------ACNDNTVHLYELPSFME  354 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-----------------gs~dg~I~iwd~~~~~~  354 (394)
                      +.+|.+...|.++++.+-.......   ...    .+| +. +++.                 ...++.|.-.|+.+++.
T Consensus       308 ~~~G~l~ald~~tG~~~W~~~~~~~---~~~----~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~  378 (488)
T cd00216         308 PKNGFFYVLDRTTGKLISARPEVEQ---PMA----YDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV  378 (488)
T ss_pred             CCCceEEEEECCCCcEeeEeEeecc---ccc----cCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence            8899999999999887655432210   011    123 22 2221                 12367888889988887


Q ss_pred             eEEEecC---------CcE--EEEEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          355 RGRIFSK---------HEV--RVIEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       355 ~~~~~~~---------~~v--~~l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +-+....         ...  ..+... .+.|+.++.||.|+.+|..+..
T Consensus       379 ~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         379 VWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             eeEeeCCccccccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCc
Confidence            7665443         111  112222 2488888999999999987653

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.21  Score=51.00  Aligned_cols=205  Identities=12%  Similarity=0.122  Sum_probs=116.5

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCC-eEEEEecCCCCEEEEEeCCCc-------eeecCCCcE
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKA-VSGIALPLRSDKLFSGSRDGT-------AWNIESSAE  206 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~  206 (394)
                      +++.+.-++-+..+|      +||-++..++.++.++.+... |..+-...+..+|++.+.|+.       ||+++.-+.
T Consensus        31 ~~s~~~~vvigt~~G------~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADG------RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EcCCCceEEEeeccc------cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            444444555555555      567777787888999999888 555555555579999999887       698864321


Q ss_pred             EEecCCCCcEE-EEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC----CCceeEEEcCCCCCcE
Q 016134          207 FSLDGPVGEVY-SMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD----TLEPVMTLNDHTDAPM  279 (394)
Q Consensus       207 ~~~~~~~~~v~-~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~----~~~~~~~~~~h~~~v~  279 (394)
                      -.    ..... ....     +.--......++.+++.+  -..+|+|-.+|.|..+.-+    .+....-...-..+|+
T Consensus       105 n~----sP~c~~~~ri-----~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen  105 NN----SPQCLYEHRI-----FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             CC----Ccceeeeeee-----eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            00    00000 0000     000000234566777776  3568899999999998532    1222222233467899


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE
Q 016134          280 SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR  357 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~  357 (394)
                      .+.+.  +..++.+..-..|.+|.+....+......+. .....  |+.+++ +.+-+++++ +.-|.+|+.........
T Consensus       176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~ln--Css~~~-~t~qfIca~-~e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLN--CSSFSD-GTYQFICAG-SEFLYFYDSDGRGPCFA  250 (933)
T ss_pred             eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-Cccce--eeecCC-CCccEEEec-CceEEEEcCCCcceeee
Confidence            99998  4442333344679999998544222222221 12222  333443 332355444 45799999987666555


Q ss_pred             Ee
Q 016134          358 IF  359 (394)
Q Consensus       358 ~~  359 (394)
                      +.
T Consensus       251 f~  252 (933)
T KOG2114|consen  251 FE  252 (933)
T ss_pred             ec
Confidence            55

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.86  E-value=0.0049  Score=61.00  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=75.6

Q ss_pred             EEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134          279 MSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI  358 (394)
Q Consensus       279 ~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~  358 (394)
                      ++++..+++++.|+.-|.+.+|+-..++.........  ..+.+ ..+.+++.. ++|.|+..|.|.++-+.........
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~--~~~~~-~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA--TGITC-VRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCc--cceEE-EEEecchhH-hhhhhcCCceEEeehhhccCCCcce
Confidence            4555558999999999999999866544333222221  22222 122466666 8899999999999988764222111


Q ss_pred             -----e--cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          359 -----F--SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       359 -----~--~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                           .  ++..|++++|++++ .+++|...|+|.+-.+++
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                 1  24569999999999 999999999998877765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.82  E-value=0.00071  Score=66.06  Aligned_cols=224  Identities=13%  Similarity=0.125  Sum_probs=120.0

Q ss_pred             cccCCCeecCCCCCeEEEEEcCCCceE-EEEecccCCCeEEEEecC-CCCEEEEEeCCCc-------eeecCCCcEEEec
Q 016134          140 HWLLGNCVRGDECRFLHSWFCGEGLTM-LAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT-------AWNIESSAEFSLD  210 (394)
Q Consensus       140 ~~~~~~~~~g~~~~~i~iWd~~~~~~~-~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~-------vWd~~~~~~~~~~  210 (394)
                      ..++.+..+|    .|-+-........ .....+|....++++|++ |.+.||.| .|..       |||+.++-.....
T Consensus        71 cIlavG~atG----~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvPke  145 (783)
T KOG1008|consen   71 CILAVGSATG----NISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVPKE  145 (783)
T ss_pred             hhhhhccccC----ceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhcccCCccceecccccCCCcc
Confidence            3455555555    6666665433222 334467889999999988 45556655 5544       8999887432110


Q ss_pred             CCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEE---c
Q 016134          211 GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLC---W  284 (394)
Q Consensus       211 ~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~---~  284 (394)
                             ...     +.++..    ....+++|.  ..++.+|.....++++|++.. .....+  .+..+..+..   .
T Consensus       146 -------~~~-----fs~~~l----~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  146 -------SPL-----FSSSTL----DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS  207 (783)
T ss_pred             -------ccc-----cccccc----cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence                   001     111112    223366675  567888888899999999832 112222  1222333333   3


Q ss_pred             CCEEEEEeCCCcEEEEE-eCCCceeeEeecccC---CcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCc------
Q 016134          285 DQFLLSCSLDHTIKVWF-ATGRGNLEAAYTHKE---DNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFM------  353 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd-~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~------  353 (394)
                      ++++++-. |+.|.+|| .++-+.......+..   +.....+.++....|  ++++. -+.++|++||+..-.      
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--lla~l~RdS~tIrlydi~~v~t~~s~n  284 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--LLAVLSRDSITIRLYDICVVGTEGSAN  284 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--hhhhhccCcceEEEecccccCCccccc
Confidence            77887765 89999999 443332222222221   122344443333344  45444 455889999976321      


Q ss_pred             --eeE---E---Eec-C--CcEEEEEECCCC---EEEEEeCCCeEEEEeC
Q 016134          354 --ERG---R---IFS-K--HEVRVIEIGPDK---LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       354 --~~~---~---~~~-~--~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~  389 (394)
                        ...   .   +.+ .  ..|.+..|++..   ..+++-..-++.-+++
T Consensus       285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V  334 (783)
T KOG1008|consen  285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV  334 (783)
T ss_pred             ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence              000   0   112 1  458888888754   4555544444544444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.77  E-value=0.38  Score=43.13  Aligned_cols=190  Identities=13%  Similarity=0.057  Sum_probs=113.0

Q ss_pred             eEEEEecccC--CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          165 TMLAKLEGHE--KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       165 ~~~~~l~~h~--~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      +.+.++. |.  .-...+.|..++.++-+.+.-|.    .+|+++++........         +..+.           
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---------~~~Fg-----------   92 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---------PRYFG-----------   92 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---------TT--E-----------
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---------ccccc-----------
Confidence            4444443 33  33556888778888889998887    5899998866322111         11111           


Q ss_pred             EEEEecCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          239 TCLAVGRSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       239 ~~l~~~~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      ..+...++. ..-.=.++...+||..+.+.+.++. ....=+.++.+++.|+......+|.++|..+-+....+......
T Consensus        93 EGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g  171 (264)
T PF05096_consen   93 EGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG  171 (264)
T ss_dssp             EEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred             eeEEEECCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECC
Confidence            112222222 3333467889999999999998886 34566888888887887777788999998776666655544332


Q ss_pred             cceEEEE-eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----------------CCcEEEEEECCCC--EEEEE
Q 016134          318 NGVLALG-GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----------------KHEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       318 ~~~~~~~-~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------------~~~v~~l~~sp~~--~l~tg  378 (394)
                      ..+..+. ..+ -+|. +.|=.=....|...|..+++....+..                ..-.+.||+.|..  +++||
T Consensus       172 ~pv~~LNELE~-i~G~-IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  172 RPVSNLNELEY-INGK-IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EE---EEEEEE-ETTE-EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EECCCcEeEEE-EcCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            2211111 011 1555 666566667788889999988776632                1348999999887  66666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=96.71  E-value=0.0044  Score=36.42  Aligned_cols=36  Identities=39%  Similarity=0.456  Sum_probs=27.3

Q ss_pred             ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEE
Q 016134          266 EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       266 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd  301 (394)
                      +++..+..|...|.++.+.  +.++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4556666777788888887  56788888888888885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.033  Score=53.74  Aligned_cols=139  Identities=11%  Similarity=0.102  Sum_probs=86.6

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---------CCEEEEEeCCCcEEEEEeCCCce--eeEeeccc
Q 016134          247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---------DQFLLSCSLDHTIKVWFATGRGN--LEAAYTHK  315 (394)
Q Consensus       247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---------~~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~  315 (394)
                      +|.++.....++-.|++.|+.+.+++-+.. |.-+.+.         ...-+.|-.|..|.-||.|-...  +.....+.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            466677777899999999999999987766 5545443         11233455688899999884332  22222222


Q ss_pred             CC--cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          316 ED--NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       316 ~~--~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      ..  ..-.++  +-..+|  ++|+|+.+|.|++||--.......++. ..+|..|..+.+|..+.|..+..+.+-++.
T Consensus       427 y~~k~nFsc~--aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCF--ATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccccee--eecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            11  111122  123344  799999999999999833333334444 778999999999922233335556665543

>smart00320 WD40 WD40 repeats

Probab=96.63  E-value=0.0061  Score=35.79  Aligned_cols=34  Identities=35%  Similarity=0.511  Sum_probs=30.2

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCce
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA  198 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v  198 (394)
                      +++..+..|...|.++.|.+++.++++++.|+.+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~   36 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTI   36 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeE
Confidence            5677778899999999999999999999999973

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=96.59  E-value=0.2  Score=50.78  Aligned_cols=143  Identities=7%  Similarity=0.012  Sum_probs=73.8

Q ss_pred             EecCCeEEEEeCCC-----eEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCCC-------------------
Q 016134          242 AVGRSRLCSGSMDN-----TIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLDH-------------------  295 (394)
Q Consensus       242 ~~~~~~l~sgs~Dg-----~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg-------------------  295 (394)
                      ...+.+.+.|+.++     +|..||..+.+  .+..+.........+.+.+.+.+.|+.++                   
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence            34456666776653     48889987643  22222211122233344467777776542                   


Q ss_pred             ----cEEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCC------CeEEEEECCC-C--ceeEEEec
Q 016134          296 ----TIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACND------NTVHLYELPS-F--MERGRIFS  360 (394)
Q Consensus       296 ----~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d------g~I~iwd~~~-~--~~~~~~~~  360 (394)
                          .+..||..+.+-  +..+..........      .-+++ +.+.|+.+      ..+..||..+ .  ..+..+..
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~------~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~  501 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV------SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES  501 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEE------EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence                466777665432  11111111111111      12455 66667654      2467899886 3  33333332


Q ss_pred             CCcEEEEEECCCC-EEEEEeCCC--eEEEEeCCCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAG--MLGVWKLLAK  392 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg--~I~vWd~~~~  392 (394)
                      ......++.. ++ +.++|+.|+  .+..||..+.
T Consensus       502 ~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        502 RLSALHTILH-DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ccccceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence            2222333333 45 888898888  6777777654

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.57  E-value=0.38  Score=48.36  Aligned_cols=176  Identities=9%  Similarity=0.020  Sum_probs=98.1

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                      +.+.+.|.++. +...++.-- +....++++++++++++.+.+..     .+..+........-..+.|...        
T Consensus       215 ~~vSvID~etm-eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE-----~G~tl~em~a~e~d~~vvfni~--------  279 (635)
T PRK02888        215 SLFTAVDAETM-EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSE-----EGVTLAEMMAAERDWVVVFNIA--------  279 (635)
T ss_pred             EEEEEEECccc-eEEEEEEeC-CCcccceECCCCCEEEEeccCcc-----cCcceeeeccccCceEEEEchH--------
Confidence            46777787764 444443322 24466788889999888875432     2222211000000012222111        


Q ss_pred             CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC-----CceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCC
Q 016134          233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT-----LEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATG  304 (394)
Q Consensus       233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~-----~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~  304 (394)
                          .+..+.-++++...  .++.|.+.|.++     .+.+..+. -......+.++  ++++++++ .+.+|.|.|+.+
T Consensus       280 ----~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        280 ----RIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             ----HHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence                00001112444444  367899999988     45555554 34556777777  67666555 589999999987


Q ss_pred             Cceee-------EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          305 RGNLE-------AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       305 ~~~~~-------~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      .+...       .....+-....-.+...|+++|. .+.+-..|..|..|++..
T Consensus       353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            44210       00011111222223445788987 888889999999999876

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.53  E-value=0.072  Score=47.65  Aligned_cols=166  Identities=10%  Similarity=0.068  Sum_probs=98.9

Q ss_pred             cccccccccCCCeecC-CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-------Cc--------
Q 016134          134 LKNVCCHWLLGNCVRG-DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-------GT--------  197 (394)
Q Consensus       134 ~~~~~~~~~~~~~~~g-~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-------g~--------  197 (394)
                      +|++++.|+-..-.+- ..-+.|-|||...+++.+.++..|.-.-..+.|.+||+.|+.+...       |.        
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            4999999984433222 3456899999999999999999999888999999999998877541       11        


Q ss_pred             -----eeecCCCcEEE---ec--CCCCcEEEEEEcCC-EEEEEecC-------------------------------CCC
Q 016134          198 -----AWNIESSAEFS---LD--GPVGEVYSMVVANE-MLFAGAQD-------------------------------GHT  235 (394)
Q Consensus       198 -----vWd~~~~~~~~---~~--~~~~~v~~l~~~~~-~l~~~~~~-------------------------------~h~  235 (394)
                           +-|..+++.+.   +.  .+...|..++..++ .+..++.-                               ...
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence                 24434444431   11  23345666666666 44444322                               112


Q ss_pred             CCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEE
Q 016134          236 RPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       236 ~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd  301 (394)
                      ..|-+|+.+  ..++ ++.-..+...+||..++..+..-.  -..+..+.....-++..+.+|.+.++.
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence            234445554  2333 333345566778888877665322  122333444434444555667777663

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.50  E-value=0.58  Score=41.91  Aligned_cols=198  Identities=13%  Similarity=0.110  Sum_probs=102.6

Q ss_pred             EEecccCCCeEEEEecCCCCEEEEEeC-CCceeecC-CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134          168 AKLEGHEKAVSGIALPLRSDKLFSGSR-DGTAWNIE-SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-  244 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~vWd~~-~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-  244 (394)
                      +.+.+-...+..|+|+|+.+.|++... .+.|..+. +++.++.         +.+.          + ....-.|++- 
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~---------i~l~----------g-~~D~EgI~y~g   74 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR---------IPLD----------G-FGDYEGITYLG   74 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE---------EE-S----------S--SSEEEEEE-S
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE---------EeCC----------C-CCCceeEEEEC
Confidence            456676778999999998776665554 44454333 2333321         1111          1 2345566665 


Q ss_pred             CCeEEEEe-CCCeEEEEeCCCCc------eeEEEc-----CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC---Cce
Q 016134          245 RSRLCSGS-MDNTIRVWELDTLE------PVMTLN-----DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG---RGN  307 (394)
Q Consensus       245 ~~~l~sgs-~Dg~V~iwd~~~~~------~~~~~~-----~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~---~~~  307 (394)
                      ++.++... .++.+.++++....      ....+.     .+...+-.++|+  ++.|+.+-+..-..+|.+..   ...
T Consensus        75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            44555544 48889888883311      112221     244568899998  56777777777777877754   222


Q ss_pred             eeEee--ccc---CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC----------CcEEEEEECCC
Q 016134          308 LEAAY--THK---EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK----------HEVRVIEIGPD  372 (394)
Q Consensus       308 ~~~~~--~~~---~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----------~~v~~l~~sp~  372 (394)
                      +....  ...   .....++ .+.++|....+++-...+..|.++| .+++.+..+.-.          ...-.|+|.++
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S-~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~  232 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLS-GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD  232 (248)
T ss_dssp             -EEEE-HHHH-HT--SS----EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred             eeeccccccccccceecccc-ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence            21111  111   0011111 2235777666888888899999999 567666655442          14788999999


Q ss_pred             CEEEEEeCCCeEEEE
Q 016134          373 KLFFTGDGAGMLGVW  387 (394)
Q Consensus       373 ~~l~tgs~Dg~I~vW  387 (394)
                      |.|...++-+...+|
T Consensus       233 G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  233 GNLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTEEEEE
T ss_pred             CCEEEEcCCceEEEe
Confidence            977777777766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.49  E-value=0.082  Score=53.85  Aligned_cols=105  Identities=9%  Similarity=0.051  Sum_probs=76.2

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCC
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGP  212 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~  212 (394)
                      |.|...++|.++++-...|.|.|+--....+.-.++.   -.+++++|+|..-.|+.|-.-|.  +|...+.+.....  
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~--   97 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV--   97 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEecCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEecCCceeeeec--
Confidence            8888888898999888889999985422211111222   23566999998888888776665  6877666544321  


Q ss_pred             CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134          213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~  263 (394)
                                         ..|..+|..+.|+  |+.++++..-|.|.+|...
T Consensus        98 -------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   98 -------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             -------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence                               1688888888887  7889999999999999765

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.46  E-value=0.89  Score=44.18  Aligned_cols=150  Identities=17%  Similarity=0.063  Sum_probs=76.4

Q ss_pred             CCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEE-------cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCc-
Q 016134          236 RPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTL-------NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRG-  306 (394)
Q Consensus       236 ~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~-  306 (394)
                      +.|.++.|. ...|++...||.+++||+. |+....+       .-....+....+.+.=++.-..++.+.+.+-.... 
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~  159 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPV  159 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccc
Confidence            788999997 6678888999999999996 3331111       11112222223331222222334444443221111 


Q ss_pred             eeeEe---ecccC---CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEe
Q 016134          307 NLEAA---YTHKE---DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       307 ~~~~~---~~~~~---~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs  379 (394)
                      ....+   .....   ..........++.+.. ..+....++.+.+.+-...+.   +...+++..|++||++ +||.-.
T Consensus       160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t  235 (410)
T PF04841_consen  160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT  235 (410)
T ss_pred             hhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence            11111   11000   0000000011233444 344444556666544433211   3335689999999999 888888


Q ss_pred             CCCeEEEEeCC
Q 016134          380 GAGMLGVWKLL  390 (394)
Q Consensus       380 ~Dg~I~vWd~~  390 (394)
                      .+|.+.+...+
T Consensus       236 ~~g~l~v~ssD  246 (410)
T PF04841_consen  236 DSGNLWVVSSD  246 (410)
T ss_pred             CCCCEEEEECc
Confidence            88998887644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.0086  Score=51.65  Aligned_cols=140  Identities=14%  Similarity=0.134  Sum_probs=79.8

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEE-EcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEee
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMT-LNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL  326 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  326 (394)
                      +..-+.|+.|+-++++..+.... -.-|... ..+.-.+..++.|+.+|.|.+|......................+.  
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip--  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP--  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc--
Confidence            44557789999998875442211 1112222 2332237789999999999999876322222222111111111110  


Q ss_pred             ECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-C-CcEE-EEEECCCCEEEEE--eCCCeEEEEeCCC
Q 016134          327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-K-HEVR-VIEIGPDKLFFTG--DGAGMLGVWKLLA  391 (394)
Q Consensus       327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~-~~v~-~l~~sp~~~l~tg--s~Dg~I~vWd~~~  391 (394)
                      --.++. +..+++.|+.|+.|++.-.+.+....+ . .++. .+....++.|+..  |.|..++.|++..
T Consensus       110 ~~~~~~-~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  110 NGRDSS-LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccc-eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            122233 788899999999999998777665544 2 2333 3333334466666  7777788887653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.28  E-value=0.21  Score=50.62  Aligned_cols=214  Identities=13%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             CCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc-------eeecCCCcEEEecCCCCcEEEE
Q 016134          149 GDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT-------AWNIESSAEFSLDGPVGEVYSM  219 (394)
Q Consensus       149 g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~-------vWd~~~~~~~~~~~~~~~v~~l  219 (394)
                      +.....+..+|..++ +.....+. +...-.++++. ++...++|+.| +.       .+|..+++-.......      
T Consensus       297 ~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~------  368 (571)
T KOG4441|consen  297 GQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN------  368 (571)
T ss_pred             CcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCcc------
Confidence            455568888998776 34444444 33334445543 45788899999 44       4666666643322111      


Q ss_pred             EEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCC-----eEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEe
Q 016134          220 VVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN-----TIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCS  292 (394)
Q Consensus       220 ~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg-----~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s  292 (394)
                                   ......-.....+.+.++|+.||     +|..||.++.+  .+..+.......-.+.+.+.+.++|+
T Consensus       369 -------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG  435 (571)
T KOG4441|consen  369 -------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGG  435 (571)
T ss_pred             -------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcC
Confidence                         11111112233466777888776     57788887644  22222222222333344477778887


Q ss_pred             CCC------cEEEEEeCCCcee--eEeecccCCcceEEEEeeECCCCCcEEEEEeCCC-----eEEEEECCCCceeEEEe
Q 016134          293 LDH------TIKVWFATGRGNL--EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----TVHLYELPSFMERGRIF  359 (394)
Q Consensus       293 ~Dg------~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~  359 (394)
                      .++      ++..||..+..-.  ..+........+..      -++. +.+.|+.|+     +|..||..+.+-...-.
T Consensus       436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~------~~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~  508 (571)
T KOG4441|consen  436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV------LNGK-IYVVGGFDGTSALSSVERYDPETNQWTMVAP  508 (571)
T ss_pred             cCCCccccceEEEEcCCCCceeecCCcccccccceEEE------ECCE-EEEECCccCCCccceEEEEcCCCCceeEccc
Confidence            554      5677777654322  12222221122222      2455 788888776     37778888765433322


Q ss_pred             cCCc--EEEEEECCCCEEEEEeCCCe-----EEEEeCC
Q 016134          360 SKHE--VRVIEIGPDKLFFTGDGAGM-----LGVWKLL  390 (394)
Q Consensus       360 ~~~~--v~~l~~sp~~~l~tgs~Dg~-----I~vWd~~  390 (394)
                      ....  -..++...+.+.+.|+.||.     |..||-.
T Consensus       509 m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  509 MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             CccccccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence            2222  22222222227888888774     5556543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.20  E-value=0.48  Score=43.08  Aligned_cols=141  Identities=18%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             cCCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCcEEEEEcC--CEEEEEeCCCcEEEEEeCCCceeeEee--------
Q 016134          244 GRSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAPMSLLCWD--QFLLSCSLDHTIKVWFATGRGNLEAAY--------  312 (394)
Q Consensus       244 ~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~--------  312 (394)
                      .++.|+.|..+| |.++++. ..+.....+  ...|..+....  +.|++- .|+.+.++++..-.......        
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence            478899999998 8999983 333333322  33488888773  444443 35999999987644333110        


Q ss_pred             ----cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-----ceeEEEecCCcEEEEEECCCCEEEEEeCCCe
Q 016134          313 ----THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-----MERGRIFSKHEVRVIEIGPDKLFFTGDGAGM  383 (394)
Q Consensus       313 ----~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~  383 (394)
                          .......+..++..-...+...|+++. ..+|.||.....     ....++.....+..++|.++ .|+.|..++ 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~-~i~v~~~~~-  158 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN-KICVGTSKG-  158 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC-EEEEEeCCc-
Confidence                111112222222111234443555444 558999987653     45566666889999999955 555555443 


Q ss_pred             EEEEeCCC
Q 016134          384 LGVWKLLA  391 (394)
Q Consensus       384 I~vWd~~~  391 (394)
                      ..+.|+.+
T Consensus       159 f~~idl~~  166 (275)
T PF00780_consen  159 FYLIDLNT  166 (275)
T ss_pred             eEEEecCC
Confidence            66677664

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.18  E-value=1.1  Score=41.75  Aligned_cols=232  Identities=13%  Similarity=0.136  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc------------eeecCCCcEE---EecCC-C----
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT------------AWNIESSAEF---SLDGP-V----  213 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~------------vWd~~~~~~~---~~~~~-~----  213 (394)
                      .++|.|..++ +.+-.+..  +-.-.+..+|+++.+++++.--.            +||.++....   .+... .    
T Consensus        18 rv~viD~d~~-k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   18 RVYVIDADSG-KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEETTTT-EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             eEEEEECCCC-cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            6899998877 66655543  23334677999999998764211            6999987654   22211 1    


Q ss_pred             CcEEEEEEcCC--EEEEEecC---------CCCC-CEEEEE-------e--cCCeEEEEeCCCeEEEEeCC-CCceeEEE
Q 016134          214 GEVYSMVVANE--MLFAGAQD---------GHTR-PVTCLA-------V--GRSRLCSGSMDNTIRVWELD-TLEPVMTL  271 (394)
Q Consensus       214 ~~v~~l~~~~~--~l~~~~~~---------~h~~-~V~~l~-------~--~~~~l~sgs~Dg~V~iwd~~-~~~~~~~~  271 (394)
                      .....++++.+  ++++....         -... -+..+.       +  .+..|.+-+.||++.-..+. .|+..++.
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            01112334433  33332222         1222 222221       1  14668888999999999887 45554332


Q ss_pred             ----cCCCCCcE-EEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE--eecc----------cCCcceEEEEeeECCCCC
Q 016134          272 ----NDHTDAPM-SLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA--AYTH----------KEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       272 ----~~h~~~v~-~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~--~~~~----------~~~~~~~~~~~~~s~~g~  332 (394)
                          .....++. .-.+.  +..++-.+.+|.|+--|+........  +...          ...-..+++    ++...
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~----~~~~~  250 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY----HAASG  250 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE----ETTTT
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee----ccccC
Confidence                11222222 22222  45666678899999999876542211  1100          011122333    44443


Q ss_pred             cEEEEEe--CCC-------eEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEE-eCCCeEEEEeCCCC
Q 016134          333 PVLICAC--NDN-------TVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTG-DGAGMLGVWKLLAK  392 (394)
Q Consensus       333 ~~l~sgs--~dg-------~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tg-s~Dg~I~vWd~~~~  392 (394)
                      .+++--.  .++       .|-+||+.+.+.+..+..++++.+|+++.+.  +|++. ..++.|.+||..+.
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            2333221  111       4778899999999999888889999999987  66554 56899999998764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.02  Score=56.19  Aligned_cols=66  Identities=14%  Similarity=0.134  Sum_probs=56.9

Q ss_pred             eECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEE-EEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          326 LNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVR-VIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~-~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .|+|.-. ++|.+..+|.|.+..+. .+.+..+. ....++ +++|.||| .|+.|-.||+|++-|+.++.
T Consensus        27 ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   27 EWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             EEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            4688887 99999999999999998 67777777 455566 99999999 99999999999999998764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.97  E-value=0.33  Score=49.09  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC---
Q 016134          276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP---  350 (394)
Q Consensus       276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~---  350 (394)
                      ..+.-+..+  ++..++-+...++.|||.+....... ........+..+.+...|+++ .+++-+....|.+|.-.   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchh
Confidence            334444433  44444444556899999987653222 223344567778888899999 55556678889988532   


Q ss_pred             ------CCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          351 ------SFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       351 ------~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                            +...+..+.-    .++|....|.++|.|+.|+. +.+.|++
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~d  154 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFD  154 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEEC
Confidence                  2233333322    68899999999996666654 4677776

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=95.88  E-value=0.3  Score=49.50  Aligned_cols=92  Identities=10%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             CeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCC------CcEEEEEeCC-Cc--eeeEeecccCCcceEEE
Q 016134          255 NTIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLD------HTIKVWFATG-RG--NLEAAYTHKEDNGVLAL  323 (394)
Q Consensus       255 g~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~D------g~i~vwd~~~-~~--~~~~~~~~~~~~~~~~~  323 (394)
                      .+|..||.++.+  .+..+.........+.+.++..+.|+.+      ..+..||..+ .+  .+..+........... 
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-  510 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-  510 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-
Confidence            357889987643  2222221112222333446666667654      2466788775 22  2222221111112222 


Q ss_pred             EeeECCCCCcEEEEEeCCC--eEEEEECCCCc
Q 016134          324 GGLNDPDGKPVLICACNDN--TVHLYELPSFM  353 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~  353 (394)
                           -+++ +.++|+.|+  .+..||..+.+
T Consensus       511 -----~~~~-iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        511 -----HDNT-IMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             -----ECCE-EEEEeeecceeehhhcCccccc
Confidence                 2566 888898888  77788877654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.87  E-value=0.042  Score=35.27  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ...|..++|+|.. +||.+..||.|.++.++-
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            5679999999999 999999999999999843

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.87  E-value=0.53  Score=45.84  Aligned_cols=179  Identities=15%  Similarity=0.048  Sum_probs=85.5

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc------eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~------vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      .+.+..-...+..-+|+|+++.++-.+....      ++++++++...+....                   ++.   ..
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-------------------g~~---~~  242 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-------------------GNN---GA  242 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-------------------Ccc---CC
Confidence            3444444556677788888876654432211      4666665543322111                   111   11


Q ss_pred             EEec--CC-eEEEEeCCCe--EEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEE--EeCCCceeeE
Q 016134          241 LAVG--RS-RLCSGSMDNT--IRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVW--FATGRGNLEA  310 (394)
Q Consensus       241 l~~~--~~-~l~sgs~Dg~--V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vw--d~~~~~~~~~  310 (394)
                      .+|+  ++ ++++...|+.  |.++|+.+.+. ..+..-.+.-..=.|+  |+.++-.+ ..|.-.||  |.......+.
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            1343  34 3555566775  45557776553 3343222211122233  66655544 45554444  5544333222


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCCceeEEEecCCcEEEEEECCCC
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSFMERGRIFSKHEVRVIEIGPDK  373 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~  373 (394)
                        ........   ...++|+|+.+++....+|.  |.+.|+.++.....+........-.|.+++
T Consensus       322 --T~~~~~~~---~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng  381 (425)
T COG0823         322 --TFSGGGNS---NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNG  381 (425)
T ss_pred             --eccCCCCc---CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCC
Confidence              22222222   33469999955555544455  777777766543333332223344455555

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.054  Score=53.29  Aligned_cols=91  Identities=11%  Similarity=-0.031  Sum_probs=67.9

Q ss_pred             CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      ..+.-+.|+  -+++|.+..+|.|.+..+. .+.+-++..+.....   .+.+|.|||+ +||.|-.||+|++.|+.++.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~---~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT---ASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc---eeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence            345667777  4689999999999888886 555555554444443   2345799999 99999999999999999998


Q ss_pred             eeEEE--ecCCcEEEEEECC
Q 016134          354 ERGRI--FSKHEVRVIEIGP  371 (394)
Q Consensus       354 ~~~~~--~~~~~v~~l~~sp  371 (394)
                      .+...  .-...|.++-|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            77763  2366788888864

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.84  E-value=0.0024  Score=62.52  Aligned_cols=149  Identities=19%  Similarity=0.246  Sum_probs=95.9

Q ss_pred             CCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCcEEEEEc---CCEEEEEe----CCCcEEEEE
Q 016134          235 TRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEP--VMTLNDHTDAPMSLLCW---DQFLLSCS----LDHTIKVWF  301 (394)
Q Consensus       235 ~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~---~~~l~s~s----~Dg~i~vwd  301 (394)
                      ...+.|+++.    .-.++.|..+|.|-+-.++...-  -....+|....++++|.   .+.||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3455666653    24588899999999998865332  22335678889999998   24566553    366899999


Q ss_pred             eCCC--ceee--EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECC-CC-EE
Q 016134          302 ATGR--GNLE--AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGP-DK-LF  375 (394)
Q Consensus       302 ~~~~--~~~~--~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-~~-~l  375 (394)
                      +.+.  .+..  .+... ......  .++|..+.+ ++.+|.....++++|++.............+..+.+.| .. ++
T Consensus       136 i~s~ltvPke~~~fs~~-~l~gqn--s~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSS-TLDGQN--SVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccccCCCccccccccc-cccCcc--ccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce
Confidence            9765  1111  12210 111111  233566666 88889888999999999543333333345677788888 44 66


Q ss_pred             EEEeCCCeEEEEe
Q 016134          376 FTGDGAGMLGVWK  388 (394)
Q Consensus       376 ~tgs~Dg~I~vWd  388 (394)
                      ++-. |+.|-+||
T Consensus       212 cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  212 CSNS-DGDIAIWD  223 (783)
T ss_pred             eccc-cCceeecc
Confidence            5554 99999999

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.46  E-value=1  Score=46.30  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE  202 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~  202 (394)
                      .++++. |.|....++.+--.|    .+.+|...+. +.-.....|..+|..+.|+++|..|+|+..=|.  +|...
T Consensus        61 hatSLC-WHpe~~vLa~gwe~g----~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLC-WHPEEFVLAQGWEMG----VSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhc-cChHHHHHhhccccc----eeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            345566 999888888666555    8999998765 555566789999999999999999999998888  48765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.43  E-value=1.6  Score=41.54  Aligned_cols=266  Identities=14%  Similarity=-0.023  Sum_probs=124.9

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG  172 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~  172 (394)
                      ...+.|+|++++.......            + ...+.... |+|++.+++-.. +    .-|.+++..++.....+..|
T Consensus        22 ~~~y~i~d~~~~~~~~l~~------------~-~~~~~~~~-~sP~g~~~~~v~-~----~nly~~~~~~~~~~~lT~dg   82 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP------------P-PPKLQDAK-WSPDGKYIAFVR-D----NNLYLRDLATGQETQLTTDG   82 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-------------E-ETTBSEEE-E-SSSTEEEEEE-T----TEEEEESSTTSEEEESES--
T ss_pred             ceeEEEEecCCCceEECcC------------C-ccccccce-eecCCCeeEEEe-c----CceEEEECCCCCeEEecccc
Confidence            4567788888876543221            1 22344444 999999887433 2    26888887666333233333


Q ss_pred             c----------------CCCeEEEEecCCCCEEEEEeCCCc------e-eecCCCc----EEE----ecCCCCcEEEEEE
Q 016134          173 H----------------EKAVSGIALPLRSDKLFSGSRDGT------A-WNIESSA----EFS----LDGPVGEVYSMVV  221 (394)
Q Consensus       173 h----------------~~~V~~l~~s~~~~~l~sgs~Dg~------v-Wd~~~~~----~~~----~~~~~~~v~~l~~  221 (394)
                      -                -+.-.++.|+||+++|+....|..      + +-.....    ...    ..+...+...+-+
T Consensus        83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v  162 (353)
T PF00930_consen   83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFV  162 (353)
T ss_dssp             TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEE
T ss_pred             ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEE
Confidence            0                122366889999999999988776      2 2222211    111    1122222222211


Q ss_pred             ---cCC-E-EEEEe--cCCCCCCEEEEEec--CCeEEEEe--CCC---eEEEEeCCCCceeEEEcC-CCCCc---EEEEE
Q 016134          222 ---ANE-M-LFAGA--QDGHTRPVTCLAVG--RSRLCSGS--MDN---TIRVWELDTLEPVMTLND-HTDAP---MSLLC  283 (394)
Q Consensus       222 ---~~~-~-l~~~~--~~~h~~~V~~l~~~--~~~l~sgs--~Dg---~V~iwd~~~~~~~~~~~~-h~~~v---~~l~~  283 (394)
                         ... . .+...  ...-...+..+.|.  +..|+..-  .+.   .+.++|..++++...++. ....|   ....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~  242 (353)
T PF00930_consen  163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF  242 (353)
T ss_dssp             EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred             EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence               111 0 11100  11234456677775  33233332  222   466677776654333321 22222   23333


Q ss_pred             c----CCEEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC----eEEEEECCCCce
Q 016134          284 W----DQFLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN----TVHLYELPSFME  354 (394)
Q Consensus       284 ~----~~~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~~  354 (394)
                      .    +.+|.....||.-.|+-+..... ...+....  -.+.. ...++++++.++.++..+.    .|..-++..+..
T Consensus       243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~--~~V~~-i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~  319 (353)
T PF00930_consen  243 LGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD--WEVTS-ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE  319 (353)
T ss_dssp             -TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS--S-EEE-EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred             ccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc--eeecc-cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence            2    34555566777666654443322 22222222  22222 2235777776777776533    455555662334


Q ss_pred             eEEEecCCcE-EEEEECCCC--EEEEEeC
Q 016134          355 RGRIFSKHEV-RVIEIGPDK--LFFTGDG  380 (394)
Q Consensus       355 ~~~~~~~~~v-~~l~~sp~~--~l~tgs~  380 (394)
                      +..+...... ..+.|+|++  ++.+.+.
T Consensus       320 ~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  320 PKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             eEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            4444442222 589999998  5555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.30  E-value=1.9  Score=41.68  Aligned_cols=143  Identities=15%  Similarity=0.196  Sum_probs=88.2

Q ss_pred             CeEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeCCC---------
Q 016134          246 SRLCSGSMDNTIRVWELDTLE-----PVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFATGR---------  305 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~-----~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~~~---------  305 (394)
                      +.|++||.+|.++||+....+     .+.+. .-..+|..+..-      +...++.=.-+.+.||.+...         
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            689999999999999986533     22222 245678887753      223334455678888887321         


Q ss_pred             ceeeEeecccCCcceEEEEee-E-CCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCC
Q 016134          306 GNLEAAYTHKEDNGVLALGGL-N-DPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAG  382 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~-~-s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg  382 (394)
                      -.+...+.|.-......++.- | ...+..+|.+-+.||.+.+|+-+.......+..---..-+.+.+.- .|++++.+.
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~  196 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW  196 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence            133445555544444444321 2 2233458888999999999998775443333331112234555655 888888888


Q ss_pred             eEEEEeC
Q 016134          383 MLGVWKL  389 (394)
Q Consensus       383 ~I~vWd~  389 (394)
                      .|..|+.
T Consensus       197 ~l~~Yky  203 (418)
T PF14727_consen  197 TLECYKY  203 (418)
T ss_pred             eEEEecH
Confidence            8888765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.18  E-value=3  Score=39.62  Aligned_cols=233  Identities=15%  Similarity=0.080  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCC------------------C
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPV------------------G  214 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~------------------~  214 (394)
                      .+.|+|++++ + +..+......+....|+|+|+.|+-...... +++..++....+....                  +
T Consensus        24 ~y~i~d~~~~-~-~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~  101 (353)
T PF00930_consen   24 DYYIYDIETG-E-ITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD  101 (353)
T ss_dssp             EEEEEETTTT-E-EEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred             eEEEEecCCC-c-eEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence            7889999886 3 3333333788999999999999998876543 4666666555332211                  2


Q ss_pred             cEEEEEEcCC--EEEEEecCCCCCCEEEEE-ec-C-C---eEE------EEeCCC--eEEEEeCCCCceeE-EE----cC
Q 016134          215 EVYSMVVANE--MLFAGAQDGHTRPVTCLA-VG-R-S---RLC------SGSMDN--TIRVWELDTLEPVM-TL----ND  273 (394)
Q Consensus       215 ~v~~l~~~~~--~l~~~~~~~h~~~V~~l~-~~-~-~---~l~------sgs~Dg--~V~iwd~~~~~~~~-~~----~~  273 (394)
                      .-..+-|+|+  .|+....|...-+...+. +. + .   .+.      .|...-  .+.|+|+.+++... ..    ..
T Consensus       102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~  181 (353)
T PF00930_consen  102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP  181 (353)
T ss_dssp             SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred             cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence            2346788998  666666663332222222 22 1 1   111      122223  45668998776532 11    12


Q ss_pred             CCCCcEEEEEc--CCEEEEE--eCCC---cEEEEEeCCCceeeEeecccC-CcceEEEEeeE-CCCCCcEEEEEeCCCeE
Q 016134          274 HTDAPMSLLCW--DQFLLSC--SLDH---TIKVWFATGRGNLEAAYTHKE-DNGVLALGGLN-DPDGKPVLICACNDNTV  344 (394)
Q Consensus       274 h~~~v~~l~~~--~~~l~s~--s~Dg---~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-s~~g~~~l~sgs~dg~I  344 (394)
                      -...+..+.|.  +..|+..  ..+.   .+.+.|..++........... ...... ...+ .+++..+|.....||.-
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~-~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD-PPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS-EEEE-TTTSSEEEEEEETTSSE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec-ccccccCCCCEEEEEEEcCCCc
Confidence            34456777776  3424433  3332   466678776554333322211 111111 1112 36666677777788766


Q ss_pred             EEEE--CCCCceeEEEec-CCcEEE-EEECCCC--EEEEEeCCC--eEEEEeCC
Q 016134          345 HLYE--LPSFMERGRIFS-KHEVRV-IEIGPDK--LFFTGDGAG--MLGVWKLL  390 (394)
Q Consensus       345 ~iwd--~~~~~~~~~~~~-~~~v~~-l~~sp~~--~l~tgs~Dg--~I~vWd~~  390 (394)
                      +||-  ...+... .+.. .-.|.. +.+++++  +++++..+.  .-.||.+.
T Consensus       261 hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  261 HLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             EEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             EEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            6554  4444322 3322 445754 6778876  566666533  44455443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.11  E-value=4.2  Score=43.67  Aligned_cols=106  Identities=11%  Similarity=0.133  Sum_probs=61.5

Q ss_pred             EEEEEc--CCEEEEEe----CC-CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE---eCCCeEEEEE
Q 016134          279 MSLLCW--DQFLLSCS----LD-HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA---CNDNTVHLYE  348 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s----~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg---s~dg~I~iwd  348 (394)
                      +++.|-  |+++++..    .+ +.|+|||-+ + .+......   ...+.-+..|-|.|. ++++-   ..|+.|.+|.
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~---~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEP---VEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCc---ccccccceeecCCCC-eEeeeeecCCCCcEEEEe
Confidence            456666  67887732    24 799999965 2 22222111   111122234578888 67664   3466788887


Q ss_pred             CCCC---ceeEEEec-CCcEEEEEECCCC-EEEE---EeCCCeEEEEeCC
Q 016134          349 LPSF---MERGRIFS-KHEVRVIEIGPDK-LFFT---GDGAGMLGVWKLL  390 (394)
Q Consensus       349 ~~~~---~~~~~~~~-~~~v~~l~~sp~~-~l~t---gs~Dg~I~vWd~~  390 (394)
                      -..-   +-....+. ..+|..++|+.++ .|++   ......|++|-+.
T Consensus       273 rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  273 RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence            5422   11112222 3349999999999 6666   4455559999754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.08  E-value=3.7  Score=40.21  Aligned_cols=203  Identities=12%  Similarity=0.046  Sum_probs=92.9

Q ss_pred             EEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC-EEEEE----------ecCCCC
Q 016134          168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE-MLFAG----------AQDGHT  235 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~----------~~~~h~  235 (394)
                      +.+-...-....|.++|++++++.++.... |+.....+....    +.-....|... .+++-          ..+...
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence            334445556889999999999998654443 444322222111    11112222222 11111          111111


Q ss_pred             -------CCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC-
Q 016134          236 -------RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR-  305 (394)
Q Consensus       236 -------~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~-  305 (394)
                             ..+..| |.|.+|...+.+ .|.+||+.+++.+..+...  +|..+.|+  +++++..+.+ .+.+++.... 
T Consensus       102 ~k~i~~~~~~~~I-f~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~  176 (443)
T PF04053_consen  102 VKSIKLPFSVEKI-FGGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEA  176 (443)
T ss_dssp             T-----SS-EEEE-E-SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred             ceEEcCCcccceE-EcCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence                   112222 226666666544 8999999999999998743  48899999  6788877754 6788775432 


Q ss_pred             ----------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-
Q 016134          306 ----------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-  373 (394)
Q Consensus       306 ----------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-  373 (394)
                                .....+......+....    |..+  -++.+ ... .|+.  +..++ ...+.+ ..++.-+...++. 
T Consensus       177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~----W~~d--~fiYt-T~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~  245 (443)
T PF04053_consen  177 VAAIPEEGVEDAFELIHEISERIKSGC----WVED--CFIYT-TSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKEN  245 (443)
T ss_dssp             HHHBTTTB-GGGEEEEEEE-S--SEEE----EETT--EEEEE--TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTT
T ss_pred             cccccccCchhceEEEEEecceeEEEE----EEcC--EEEEE-cCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCC
Confidence                      02222222122222222    2322  13333 222 5554  33332 222333 5567777777755 


Q ss_pred             EEEEEeCCCeEEEEeCC
Q 016134          374 LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       374 ~l~tgs~Dg~I~vWd~~  390 (394)
                      .++....|+.|..+.++
T Consensus       246 ~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  246 RLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEE-TT--EEEEE--
T ss_pred             EEEEEECCCCEEEEEEC
Confidence            88888889888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.90  E-value=0.15  Score=53.46  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=75.1

Q ss_pred             CCEEEEEecCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       236 ~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      ..+.+.+.-...++.|+..|.|-..|+... .+...-+.-.++|++++|+  |.+++.|-.+|.|.+||+...+.++.+.
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            344445555667888888899999888653 2222223346789999998  7788888889999999999888888887


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                      .+..+...+-.. .+..++. .++++..-|.  +|.
T Consensus       170 e~~ap~t~vi~v-~~t~~nS-~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  170 EHGAPVTGVIFV-GRTSQNS-KLLTSDTGGS--FWK  201 (1206)
T ss_pred             ecCCccceEEEE-EEeCCCc-EEEEccCCCc--eEE
Confidence            776665544333 2344555 6777766665  454

>smart00356 ZnF_C3H1 zinc finger

Probab=94.86  E-value=0.015  Score=32.31  Aligned_cols=23  Identities=30%  Similarity=0.824  Sum_probs=19.6

Q ss_pred             CceeEEEeeeCccCCC-CCccccc
Q 016134           36 NKVVCVYVLEGRCNRN-PCRFAHT   58 (394)
Q Consensus        36 ~~~~~~~~~~~~~~~~-~~~~~h~   58 (394)
                      ...+|.+|+.|.|++- .|+|+|.
T Consensus         3 k~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        3 KTELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCcCcCccCCCCCCCCCcCCCCc
Confidence            3458999999999995 5999986

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.81  E-value=0.11  Score=45.07  Aligned_cols=103  Identities=12%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCcee-EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccC-Ccc
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPV-MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNG  319 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~  319 (394)
                      ...+++|+.||.|.+|........ ..+..-...|.++...   +.+..+++.|+.|+.|++.-.+.+...-.|.. +..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            567999999999999988621111 1111112333333333   44888899999999999877666655555542 222


Q ss_pred             eEEEEeeECCCCCcEEEEE--eCCCeEEEEECCCC
Q 016134          320 VLALGGLNDPDGKPVLICA--CNDNTVHLYELPSF  352 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sg--s~dg~I~iwd~~~~  352 (394)
                      ...+    ...++ +|+.+  +.|..++.|++...
T Consensus       150 ~~iv----v~sd~-~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  150 ELIV----VGSDE-FLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeEE----ecCCc-eEEeeccccchhhhhcchhhh
Confidence            2221    22333 55555  66777777777654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.79  E-value=1.2  Score=46.45  Aligned_cols=132  Identities=13%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCC-eEEEEecC------CCCEEEEEeCCCc-eeecCCCc--EEEecCCCCcEEEEE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKA-VSGIALPL------RSDKLFSGSRDGT-AWNIESSA--EFSLDGPVGEVYSMV  220 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~-V~~l~~s~------~~~~l~sgs~Dg~-vWd~~~~~--~~~~~~~~~~v~~l~  220 (394)
                      ....|+-.|++.+ +.+.+...|... |..++=..      ..+.++.-+.++. .||.+-..  .+....+.       
T Consensus       502 ~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~-------  573 (794)
T PF08553_consen  502 NPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ-------  573 (794)
T ss_pred             CCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc-------
Confidence            3447888899888 888888887754 66654321      1223333333333 37776432  11100000       


Q ss_pred             EcCCEEEEEecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134          221 VANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTI  297 (394)
Q Consensus       221 ~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i  297 (394)
                      +           .......|++-. ..+||+|+.+|.||+||--..+....|.+-..+|..|...  |++|++.+ +..|
T Consensus       574 Y-----------~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyL  641 (794)
T PF08553_consen  574 Y-----------SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYL  641 (794)
T ss_pred             c-----------ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceE
Confidence            0           233456677766 6799999999999999953333334455677899999888  77766554 4677


Q ss_pred             EEEEe
Q 016134          298 KVWFA  302 (394)
Q Consensus       298 ~vwd~  302 (394)
                      .|++.
T Consensus       642 lLi~t  646 (794)
T PF08553_consen  642 LLIDT  646 (794)
T ss_pred             EEEEE
Confidence            78875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.47  E-value=2.5  Score=42.96  Aligned_cols=187  Identities=12%  Similarity=0.120  Sum_probs=95.0

Q ss_pred             cccccCCCeecC-CCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-------eeecCCCcEEE
Q 016134          138 CCHWLLGNCVRG-DECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-------AWNIESSAEFS  208 (394)
Q Consensus       138 ~~~~~~~~~~~g-~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~~  208 (394)
                      +..|++++-.+| ..-..+..||..++ +..+..+...........  -+|...+.|+.||.       .||..+.+...
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            344455444423 34467888888655 233333333322222222  26888899999987       37766655432


Q ss_pred             ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCC------eEEEEeCCCCc--eeEEEcCCCCCcEE
Q 016134          209 LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN------TIRVWELDTLE--PVMTLNDHTDAPMS  280 (394)
Q Consensus       209 ~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg------~V~iwd~~~~~--~~~~~~~h~~~v~~  280 (394)
                      .......                   ....-...+.+.+.++|+.|+      +|..||..+.+  .+..+..-......
T Consensus       411 va~m~~~-------------------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~  471 (571)
T KOG4441|consen  411 VAPMLTR-------------------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV  471 (571)
T ss_pred             cCCCCcc-------------------eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceE
Confidence            2211111                   111222334566677777444      67888887754  22222222222223


Q ss_pred             EEEcCCEEEEEeCCC-----cEEEEEeCCCceeeE--eecccCCcceEEEEeeECCCCCcEEEEEeCCC-----eEEEEE
Q 016134          281 LLCWDQFLLSCSLDH-----TIKVWFATGRGNLEA--AYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----TVHLYE  348 (394)
Q Consensus       281 l~~~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----~I~iwd  348 (394)
                      ....+.+.+.|+.|+     +|..||.++.+-...  +........+..      -++. +.++|+.|+     +|..||
T Consensus       472 a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~------~~~~-ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  472 AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV------LGGK-LYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE------ECCE-EEEEecccCccccceeEEcC
Confidence            334477777777776     366687765433222  111111112222      2455 777787775     466676


Q ss_pred             CCCC
Q 016134          349 LPSF  352 (394)
Q Consensus       349 ~~~~  352 (394)
                      ..+.
T Consensus       545 p~~d  548 (571)
T KOG4441|consen  545 PETD  548 (571)
T ss_pred             CCCC
Confidence            6554

>PHA03098 kelch-like protein; Provisional

Probab=94.38  E-value=2.4  Score=42.78  Aligned_cols=143  Identities=10%  Similarity=0.041  Sum_probs=66.7

Q ss_pred             ecCCeEEEEeCC-----CeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEEEeCC------CcEEEEEeCCCceee
Q 016134          243 VGRSRLCSGSMD-----NTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLSCSLD------HTIKVWFATGRGNLE  309 (394)
Q Consensus       243 ~~~~~l~sgs~D-----g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s~s~D------g~i~vwd~~~~~~~~  309 (394)
                      +.+.+++.|+.+     ..+..||..+.+-  ...+.........+...+.+.+.|+.+      ..+..||..+.+-..
T Consensus       341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            345556666654     3577888876442  111111111222233336666666632      457888876543211


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEE--EecC-CcEEEEEECCCC-EEEE
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGR--IFSK-HEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~--~~~~-~~v~~l~~sp~~-~l~t  377 (394)
                       ...........+..   ..++. +++.|+.+        ..+.+||..+.+-...  +... .....+.+  ++ +++.
T Consensus       421 -~~~~p~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~  493 (534)
T PHA03098        421 -GSPLPISHYGGCAI---YHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV  493 (534)
T ss_pred             -cCCCCccccCceEE---EECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE
Confidence             11111111111111   22455 66666643        2388899876543221  1111 11122222  45 6666


Q ss_pred             EeCC-----CeEEEEeCCCC
Q 016134          378 GDGA-----GMLGVWKLLAK  392 (394)
Q Consensus       378 gs~D-----g~I~vWd~~~~  392 (394)
                      |+.+     ..|.+||..++
T Consensus       494 GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        494 GGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             cCCcCCcccceeEEEeCCCC
Confidence            6654     46788887653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.26  E-value=6.8  Score=39.47  Aligned_cols=62  Identities=8%  Similarity=0.022  Sum_probs=37.9

Q ss_pred             CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC
Q 016134          295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH  362 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~  362 (394)
                      +.|.-+|+.+++..-............ +    .-.+. +++.+..||.++.+|.++++++-.+....
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l----~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~~~g~  502 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-L----ATAGD-LVFYGTLEGYFKAFDAKTGEELWKFKTGS  502 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-e----EECCc-EEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence            456667777665544333211111111 1    11344 67778889999999999999998876643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=2.5  Score=36.44  Aligned_cols=174  Identities=15%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             CCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEE
Q 016134          185 RSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVW  260 (394)
Q Consensus       185 ~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iw  260 (394)
                      ++.++.+.+.-|.    +||+++++........         ++.++.-+...-.+.+..+         .-.||...++
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---------~~~~FgEGit~~gd~~y~L---------Tw~egvaf~~  116 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA---------PDTVFGEGITKLGDYFYQL---------TWKEGVAFKY  116 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC---------CccccccceeeccceEEEE---------EeccceeEEE
Confidence            5677778777766    6999988876321111         1111100000111223333         3457888899


Q ss_pred             eCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC
Q 016134          261 ELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN  340 (394)
Q Consensus       261 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~  340 (394)
                      |.++.+++..+. ..+.=+.++..++.|+.+....+++.-|..+-.....+........+..+.-.---+|. +.|---.
T Consensus       117 d~~t~~~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~-lyANVw~  194 (262)
T COG3823         117 DADTLEELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGE-LYANVWQ  194 (262)
T ss_pred             ChHHhhhhcccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccE-EEEeeee
Confidence            999988887775 45666888888777777766666766665443333222222211111111100012454 4554444


Q ss_pred             CCeEEEEECCCCceeEEEec-------------CCcEEEEEECCCC--EEEEE
Q 016134          341 DNTVHLYELPSFMERGRIFS-------------KHEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~sp~~--~l~tg  378 (394)
                      +..|...|..+++.+..+..             ..-.+.+++.|++  +++||
T Consensus       195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            55566667777766554432             2247889999987  56665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.86  E-value=2.6  Score=41.33  Aligned_cols=135  Identities=12%  Similarity=0.031  Sum_probs=71.1

Q ss_pred             EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      ...+.++  ++.+++ +.||.-.||.....+....     +.-..+.|. .+.+|+-...++|.++.--+.+....+.. 
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-  107 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-  107 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-
Confidence            4455665  445555 6688888888544443332     222345565 56677777788899973222111112211 


Q ss_pred             cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                        +..+-.+   |.  |. +|...+. +.|.+||..+++.+..+... .|..+.|++++ +++..+.+ .+.|.+.+
T Consensus       108 --~~~~~~I---f~--G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  108 --PFSVEKI---FG--GN-LLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             --SS-EEEE---E---SS-SEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             --CcccceE---Ec--Cc-EEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence              1223333   33  66 5555554 48999999999999888754 48999999999 77777655 56666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=6.9  Score=37.60  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=91.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       247 ~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      .++....+..|.+.|..+.+.+....--. ....++++  ++.+..+..   ++++.+.|..+.+..........+    
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P----  162 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP----  162 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc----
Confidence            45555567999999988877776664322 55666666  655555544   688889998877777664443322    


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE-E----EecCCcEEEEEECCCC-EEEEEe-CC--CeEEEEeCCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG-R----IFSKHEVRVIEIGPDK-LFFTGD-GA--GMLGVWKLLA  391 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~-~----~~~~~~v~~l~~sp~~-~l~tgs-~D--g~I~vWd~~~  391 (394)
                       ....++|+|+.++++-..++.|.+.|........ .    +........+.++|++ ++.... .+  +.+...|..+
T Consensus       163 -~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         163 -TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             -ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence             2334699999666766789999999977665552 1    2224456788999999 333332 22  5777766654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.29  E-value=0.39  Score=50.47  Aligned_cols=108  Identities=16%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          276 DAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       276 ~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      ..+.+.+.-+..++.|+..|.+-..|.+..-.. ..........+.  +.+|+.+|. +++.|-.+|.|.+||+..++..
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vt--svafn~dg~-~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVT--SVAFNQDGS-LLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcce--eeEecCCCc-eeccccCCCcEEEEEccCCcce
Confidence            345555555778999999999999998653111 111111112222  345788998 8888999999999999998877


Q ss_pred             EEEec-CCc---EEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          356 GRIFS-KHE---VRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       356 ~~~~~-~~~---v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      ..+.. .++   |..+.+..++ .++++..-|.  +|.+
T Consensus       166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            76654 333   4445555555 7888888776  5654

>PHA02790 Kelch-like protein; Provisional

Probab=93.17  E-value=5.9  Score=39.38  Aligned_cols=142  Identities=8%  Similarity=-0.013  Sum_probs=67.6

Q ss_pred             ecCCeEEEEeCC--CeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCCC---cEEEEEeCCCceeeEeeccc
Q 016134          243 VGRSRLCSGSMD--NTIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLDH---TIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       243 ~~~~~l~sgs~D--g~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~  315 (394)
                      .++.+.+.|+.+  .++..||..+.+  .+..+.........+.+.+...+.|+.++   .+..||.++.+-.. .....
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~~m~  395 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF-GPSTY  395 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe-CCCCC
Confidence            445556666653  357888876543  22222211122233344467777777543   46678876543211 11111


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee--EEEecCCcEEEEEECCCCEEEEEeCC-----CeEEEEe
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER--GRIFSKHEVRVIEIGPDKLFFTGDGA-----GMLGVWK  388 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~v~~l~~sp~~~l~tgs~D-----g~I~vWd  388 (394)
                      .+....+..   .-+++ +.+.|+   .+.+||..+.+-.  ..+.....-.+++...+.+++.|+.+     ..|..||
T Consensus       396 ~~r~~~~~~---~~~~~-IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        396 YPHYKSCAL---VFGRR-LFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CccccceEE---EECCE-EEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence            111111111   22455 666663   5778988765332  22222111223333323366777654     3577888


Q ss_pred             CCCC
Q 016134          389 LLAK  392 (394)
Q Consensus       389 ~~~~  392 (394)
                      ..++
T Consensus       469 ~~~~  472 (480)
T PHA02790        469 NRTY  472 (480)
T ss_pred             CCCC
Confidence            7654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.02  E-value=2  Score=41.89  Aligned_cols=92  Identities=16%  Similarity=0.138  Sum_probs=58.1

Q ss_pred             CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCCceeEEEec-CCcEEEEEECC
Q 016134          295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSFMERGRIFS-KHEVRVIEIGP  371 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~-~~~v~~l~~sp  371 (394)
                      ..+.++|+..++...... ......    ...|+|||+.++++...|+.  |.++|+....... +.. ...-..=.|+|
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~----~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp  291 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNG----APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP  291 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccC----CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC
Confidence            458899998776554443 222122    33469999988888888876  4555776665333 443 22233667999


Q ss_pred             CC--EEEEEeCCCeEEEEeCCCC
Q 016134          372 DK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       372 ~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ||  ++++.+..|.-.||-++.+
T Consensus       292 dG~~ivf~Sdr~G~p~I~~~~~~  314 (425)
T COG0823         292 DGSKIVFTSDRGGRPQIYLYDLE  314 (425)
T ss_pred             CCCEEEEEeCCCCCcceEEECCC
Confidence            99  6667777777666655443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.99  E-value=6.8  Score=35.45  Aligned_cols=137  Identities=12%  Similarity=0.092  Sum_probs=77.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCC-----ceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC---
Q 016134          246 SRLCSGSMDNTIRVWELDTL-----EPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED---  317 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~---  317 (394)
                      ...+......+|.||.....     +..+++. -...+.++.|.++.|+.+..+ ...+.|+.++............   
T Consensus       105 ~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~  182 (275)
T PF00780_consen  105 SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSF  182 (275)
T ss_pred             ceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchh
Confidence            34444455568999887542     4556655 457889999998888888765 4788999865543332211111   


Q ss_pred             ------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE--EEecCCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          318 ------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG--RIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       318 ------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                            .....+  .--++++ +|++-  |..-.+.|. .|+...  .+.=...+.++++... +|+.-.. +.|.||++
T Consensus       183 ~~~~~~~~~~~~--~~~~~~e-~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~p-yli~~~~-~~iEV~~~  254 (275)
T PF00780_consen  183 KSRNSSSKPLGI--FQLSDNE-FLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSSP-YLIAFSS-NSIEVRSL  254 (275)
T ss_pred             hhcccCCCceEE--EEeCCce-EEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEEECC-EEEEECC-CEEEEEEC
Confidence                  111111  1123445 66643  333333444 343322  2222556777777544 5555555 55999998


Q ss_pred             CCC
Q 016134          390 LAK  392 (394)
Q Consensus       390 ~~~  392 (394)
                      .+.
T Consensus       255 ~~~  257 (275)
T PF00780_consen  255 ETG  257 (275)
T ss_pred             cCC
Confidence            875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.70  E-value=0.02  Score=31.94  Aligned_cols=24  Identities=38%  Similarity=0.949  Sum_probs=17.6

Q ss_pred             CceeEEEeee-CccCC-CCCcccccc
Q 016134           36 NKVVCVYVLE-GRCNR-NPCRFAHTE   59 (394)
Q Consensus        36 ~~~~~~~~~~-~~~~~-~~~~~~h~~   59 (394)
                      ...+|.+|.+ |.|.+ ..|+|.|.+
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             ccccChhhccCCccCCCCCcCccCCC
Confidence            3568999999 99999 889999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.67  E-value=1.7  Score=42.48  Aligned_cols=148  Identities=11%  Similarity=0.116  Sum_probs=80.3

Q ss_pred             CCCCEEEEEeCCCc-e--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEE
Q 016134          184 LRSDKLFSGSRDGT-A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVW  260 (394)
Q Consensus       184 ~~~~~l~sgs~Dg~-v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iw  260 (394)
                      .+.++|+.-+.... |  -|++.|+.+........|.-+.+.|+.-+        .     ......-+.|-.|..|.-|
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~--------~-----Ql~~e~TlvGLs~n~vfri  409 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKF--------A-----QLTSEQTLVGLSDNSVFRI  409 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcch--------h-----cccccccEEeecCCceEEe
Confidence            34455554333322 4  57778887755444444555555544110        0     0112334557778899999


Q ss_pred             eCCCCc--eeEEEcCCC----CCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          261 ELDTLE--PVMTLNDHT----DAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       261 d~~~~~--~~~~~~~h~----~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      |++-..  .+...+.|.    ....|.+-. ..++++||.+|.||+||-........+.+...++.-+.+    +.+|+ 
T Consensus       410 DpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdv----tadGK-  484 (644)
T KOG2395|consen  410 DPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDV----TADGK-  484 (644)
T ss_pred             cccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEe----eccCc-
Confidence            987422  122222232    233444444 679999999999999996332222233333333333333    67898 


Q ss_pred             EEEEEeCCCeEEEEECC
Q 016134          334 VLICACNDNTVHLYELP  350 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~  350 (394)
                      +|++. .+..+.+.++.
T Consensus       485 wil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  485 WILAT-CKTYLLLIDTL  500 (644)
T ss_pred             EEEEe-cccEEEEEEEe
Confidence            55533 36778777754

>PHA03098 kelch-like protein; Provisional

Probab=92.38  E-value=10  Score=38.21  Aligned_cols=105  Identities=10%  Similarity=0.055  Sum_probs=49.5

Q ss_pred             cCCeEEEEeCC------CeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEEEeCC--------CcEEEEEeCCCce
Q 016134          244 GRSRLCSGSMD------NTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLSCSLD--------HTIKVWFATGRGN  307 (394)
Q Consensus       244 ~~~~l~sgs~D------g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s~s~D--------g~i~vwd~~~~~~  307 (394)
                      .+.+++.|+.+      ..+..||+.+.+=  +..+.........+...+.+++.|+.+        ..+.+||..+.+-
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            35555556532      4688899876432  111111111122233335556666542        2378888776432


Q ss_pred             eeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCc
Q 016134          308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFM  353 (394)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~  353 (394)
                      ... .....+......+   ..+++ +++.|+.+     ..|.+||..+.+
T Consensus       469 ~~~-~~~~~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        469 TEL-SSLNFPRINASLC---IFNNK-IYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             eeC-CCCCcccccceEE---EECCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence            211 1111111111111   12555 66777654     468888887653

>PHA02790 Kelch-like protein; Provisional

Probab=92.34  E-value=9.5  Score=37.95  Aligned_cols=103  Identities=10%  Similarity=0.001  Sum_probs=47.6

Q ss_pred             EecCCeEEEEeCC---CeEEEEeCCCCcee--EEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccC
Q 016134          242 AVGRSRLCSGSMD---NTIRVWELDTLEPV--MTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE  316 (394)
Q Consensus       242 ~~~~~~l~sgs~D---g~V~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  316 (394)
                      ..++...+.|+.+   ..+..||.++.+=.  ..+.........+.+.+...+.|   |.+.+||..+++-.. ......
T Consensus       360 ~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~-~~~m~~  435 (480)
T PHA02790        360 SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL-IDDPIY  435 (480)
T ss_pred             EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeE-cCCCCC
Confidence            3445566666654   34778888764311  11111111122223335555555   356788876543221 111111


Q ss_pred             CcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCC
Q 016134          317 DNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSF  352 (394)
Q Consensus       317 ~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~  352 (394)
                      +.......   --+++ +.+.|+.+     ..|..||..+.
T Consensus       436 ~r~~~~~~---v~~~~-IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        436 PRDNPELI---IVDNK-LLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CccccEEE---EECCE-EEEECCcCCCcccceEEEEECCCC
Confidence            11111111   12566 77777654     35677777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.33  E-value=14  Score=37.32  Aligned_cols=150  Identities=14%  Similarity=0.121  Sum_probs=89.0

Q ss_pred             EecCCeEEEEeCCCeEEEEeCCCCceeEEEcC--CC--CCcE-EEEEcCCEEEEEeC------CCcEEEEEeCCCceeeE
Q 016134          242 AVGRSRLCSGSMDNTIRVWELDTLEPVMTLND--HT--DAPM-SLLCWDQFLLSCSL------DHTIKVWFATGRGNLEA  310 (394)
Q Consensus       242 ~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--h~--~~v~-~l~~~~~~l~s~s~------Dg~i~vwd~~~~~~~~~  310 (394)
                      ++.++.++.++.|+.|.-.|.++++.+-....  +.  ..+. +-...+..++.+..      ++.|.-+|+++++.+-.
T Consensus       117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            44567788888999999999999998876542  11  1111 12223555666543      68899999998877655


Q ss_pred             eecccCCc---------------------------c-eEEEEeeECCCCCcEEEEEe-C----CC-----------eEEE
Q 016134          311 AYTHKEDN---------------------------G-VLALGGLNDPDGKPVLICAC-N----DN-----------TVHL  346 (394)
Q Consensus       311 ~~~~~~~~---------------------------~-~~~~~~~~s~~g~~~l~sgs-~----dg-----------~I~i  346 (394)
                      +.......                           . .+-....++++.. +|..+. +    ++           .|.-
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vA  275 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVA  275 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence            44322110                           0 0000123466555 444333 1    12           6777


Q ss_pred             EECCCCceeEEEec-CCc---------EEEEEECCCC----EEEEEeCCCeEEEEeCCCC
Q 016134          347 YELPSFMERGRIFS-KHE---------VRVIEIGPDK----LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       347 wd~~~~~~~~~~~~-~~~---------v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .|+++++.+-.+.. .+.         ..-+.+..+|    .++.+..+|.+.+.|-.+.
T Consensus       276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence            88999988776654 221         2223332344    6778889999988887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.32  E-value=4.7  Score=38.90  Aligned_cols=224  Identities=13%  Similarity=0.130  Sum_probs=91.0

Q ss_pred             eEEEEEcCCC---ceEEEEecc---cC----CCeEEEEecCCCCEEEEEeCCCc--------eeecCCCcEEEecC----
Q 016134          154 FLHSWFCGEG---LTMLAKLEG---HE----KAVSGIALPLRSDKLFSGSRDGT--------AWNIESSAEFSLDG----  211 (394)
Q Consensus       154 ~i~iWd~~~~---~~~~~~l~~---h~----~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~~~~~~~----  211 (394)
                      .|+|.|+.+.   .++.++++.   +.    ..-..+---|+|+.++|+=.|..        +.|-++-+......    
T Consensus        99 rIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~  178 (461)
T PF05694_consen   99 RIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG  178 (461)
T ss_dssp             -EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T
T ss_pred             cEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC
Confidence            7999998633   255555543   21    11122223468888888744333        35555444432111    


Q ss_pred             CCCcEEEEEEcCC--EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCcEEEEEc---
Q 016134          212 PVGEVYSMVVANE--MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT--DAPMSLLCW---  284 (394)
Q Consensus       212 ~~~~v~~l~~~~~--~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~--~~v~~l~~~---  284 (394)
                      ...--+..-+.|.  .+++..+.. ...+ .--|+...+..+....++.+||+.+.+.++++.--.  ..+..|.|.   
T Consensus       179 ~~~~gYDfw~qpr~nvMiSSeWg~-P~~~-~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P  256 (461)
T PF05694_consen  179 PQPFGYDFWYQPRHNVMISSEWGA-PSMF-EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDP  256 (461)
T ss_dssp             T------EEEETTTTEEEE-B----HHHH-TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SST
T ss_pred             CCCCCCCeEEcCCCCEEEEeccCC-hhhc-ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCC
Confidence            1122334444443  333322210 0000 000112223334456799999999999999987533  235567776   


Q ss_pred             --CCEEEEEeCCCcEEEEEe-CCCc----eeeEeecccC------C-------cceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134          285 --DQFLLSCSLDHTIKVWFA-TGRG----NLEAAYTHKE------D-------NGVLALGGLNDPDGKPVLICACNDNTV  344 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~-~~~~----~~~~~~~~~~------~-------~~~~~~~~~~s~~g~~~l~sgs~dg~I  344 (394)
                        ..-++.+....+|..|-- ..++    .+..+...+.      .       ...+...+..|.|.+.+.++.-.+|.|
T Consensus       257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv  336 (461)
T PF05694_consen  257 DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV  336 (461)
T ss_dssp             T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE
T ss_pred             CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE
Confidence              123444555566666644 2221    1111111100      0       012233344588999677778889999


Q ss_pred             EEEECCCC---ceeEEEecC-----------------CcEEEEEECCCC--EEEEEe
Q 016134          345 HLYELPSF---MERGRIFSK-----------------HEVRVIEIGPDK--LFFTGD  379 (394)
Q Consensus       345 ~iwd~~~~---~~~~~~~~~-----------------~~v~~l~~sp~~--~l~tgs  379 (394)
                      +.||+...   ++..++...                 +...-|..|-||  +.+|.|
T Consensus       337 rqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  337 RQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             EEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            99999875   334443321                 124667788888  444443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.22  E-value=9.7  Score=35.37  Aligned_cols=208  Identities=14%  Similarity=0.080  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCCCcEE-EecC-----CCCcEEEEEEcCC-EE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEF-SLDG-----PVGEVYSMVVANE-ML  226 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~-~~~~-----~~~~v~~l~~~~~-~l  226 (394)
                      .|+-|+..++......   +.+.+.++..-..+..|+++.....+++.+++... .+..     .....+.+...++ .+
T Consensus        48 ~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~  124 (307)
T COG3386          48 RIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI  124 (307)
T ss_pred             eEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence            6777877655332222   23344555554455667776666667888666552 2111     1112222333333 22


Q ss_pred             EEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeC
Q 016134          227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DHTIKVWFAT  303 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~  303 (394)
                      ..+....+.     .....     .-.-|.|..+|. .+..++.+..+-...+.|+|+  ++.|+.+.. .+.|.-|++.
T Consensus       125 wfgt~~~~~-----~~~~~-----~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         125 WFGDMGYFD-----LGKSE-----ERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             EEeCCCccc-----cCccc-----cCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            222111100     00000     001133444444 456666666666667889998  656665544 4778878765


Q ss_pred             C--C----ceeeEeecc-cCCcceEEEEeeECCCCCcEEEEEeCCC-eEEEEECCCCceeEEEecC-CcEEEEEECCC-C
Q 016134          304 G--R----GNLEAAYTH-KEDNGVLALGGLNDPDGKPVLICACNDN-TVHLYELPSFMERGRIFSK-HEVRVIEIGPD-K  373 (394)
Q Consensus       304 ~--~----~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~-~~v~~l~~sp~-~  373 (394)
                      .  .    ......... .....-+++    +.+|. +.+++..+| .|.+|+.. ++++..+... ..+++++|--. .
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~v----DadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~  267 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAV----DADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL  267 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEE----eCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence            2  1    111111111 111222333    67787 443444443 89999998 8888888775 67888888764 2


Q ss_pred             --EEEEEeCC
Q 016134          374 --LFFTGDGA  381 (394)
Q Consensus       374 --~l~tgs~D  381 (394)
                        +++|+...
T Consensus       268 ~~L~iTs~~~  277 (307)
T COG3386         268 NTLYITSARS  277 (307)
T ss_pred             CEEEEEecCC
Confidence              55565554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.06  E-value=5.7  Score=40.94  Aligned_cols=102  Identities=13%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             CCEEEEEeCCCcEEEEEeCC-------C----ce------eeEeecccCCcceEEEEeeEC--CCCCcEEEEEeCCCeEE
Q 016134          285 DQFLLSCSLDHTIKVWFATG-------R----GN------LEAAYTHKEDNGVLALGGLND--PDGKPVLICACNDNTVH  345 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~-------~----~~------~~~~~~~~~~~~~~~~~~~~s--~~g~~~l~sgs~dg~I~  345 (394)
                      ...|+.|..||.|.+|.++.       .    ..      +...........+.  .+.++  .... +||+++....|.
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaW--GLdIh~~~~~r-lIAVSsNs~~VT  190 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAW--GLDIHDYKKSR-LIAVSSNSQEVT  190 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCcee--EEEEEecCcce-EEEEecCCceEE
Confidence            46889999999999996521       0    00      00011111112333  33333  4444 889888888888


Q ss_pred             EEECCCCce----eEEEecCCcEEEEEECCCC-------EEEEEeCCCeEEEEeC
Q 016134          346 LYELPSFME----RGRIFSKHEVRVIEIGPDK-------LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       346 iwd~~~~~~----~~~~~~~~~v~~l~~sp~~-------~l~tgs~Dg~I~vWd~  389 (394)
                      ||-......    .....+.+.|.+|+|-++.       .|++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            886554211    1122347789999998743       6888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.99  E-value=8.9  Score=38.28  Aligned_cols=147  Identities=14%  Similarity=0.105  Sum_probs=82.3

Q ss_pred             CCEEEEEec-CCeE-EEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeCC-
Q 016134          236 RPVTCLAVG-RSRL-CSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFATG-  304 (394)
Q Consensus       236 ~~V~~l~~~-~~~l-~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~~-  304 (394)
                      .+|..++|. |+.+ ++.-  ..|.+++=|   .+.+..|    ..|..+.|.      -..|++......|.||.+-- 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            467778885 5443 3321  233333322   1233333    346777776      12566667788999998752 


Q ss_pred             ----Cceee-EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEecCCcEEEEEECCCC--EE
Q 016134          305 ----RGNLE-AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIFSKHEVRVIEIGPDK--LF  375 (394)
Q Consensus       305 ----~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~v~~l~~sp~~--~l  375 (394)
                          .+.+. ......+...++..-+.|+|... +|++-.....-.+++++...  ....+...+-|.|.+|.+||  ++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                11111 11122223334444455899887 77666555544566665443  33445557789999999999  44


Q ss_pred             EEEeCCCeEEEEeCC
Q 016134          376 FTGDGAGMLGVWKLL  390 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~  390 (394)
                      ++.+..=.-+|||-.
T Consensus       172 VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEeCCeEEEEEecCc
Confidence            444444456788743

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.98  E-value=2.2  Score=41.08  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=71.3

Q ss_pred             CeEEEEeCCCCceeEEEcCCCC-C--cEEEEEc--CCEEEEEe--------------------CCCcEEEEEeCCCceee
Q 016134          255 NTIRVWELDTLEPVMTLNDHTD-A--PMSLLCW--DQFLLSCS--------------------LDHTIKVWFATGRGNLE  309 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~-~--v~~l~~~--~~~l~s~s--------------------~Dg~i~vwd~~~~~~~~  309 (394)
                      |-+.++|-++.+.....+.... .  -+.+.+.  .+.++|..                    ...+|.+||+.+.+.++
T Consensus       157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q  236 (461)
T PF05694_consen  157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ  236 (461)
T ss_dssp             -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred             CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence            4577778777777666654222 1  2233333  45566543                    24689999999999888


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC-CCCc----eeEEEec------------------CCcEEE
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL-PSFM----ERGRIFS------------------KHEVRV  366 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~-~~~~----~~~~~~~------------------~~~v~~  366 (394)
                      .+.-..+....+.+.....|+...=++.+....+|..|-- ..++    .+..+..                  ..-|+.
T Consensus       237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            8876655445556666667777655555555566655544 4432    2233322                  123789


Q ss_pred             EEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          367 IEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       367 l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |.+|.|.  +.+++=.+|.|+.||++..
T Consensus       317 I~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            9999998  5666668999999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.71  E-value=10  Score=34.56  Aligned_cols=147  Identities=10%  Similarity=0.080  Sum_probs=93.6

Q ss_pred             CCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134          236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL--NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT  313 (394)
Q Consensus       236 ~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  313 (394)
                      .-+..+.+++++.+.+..+.-++|.|+.+...-..+  -.-.+.-..+..+|++...+..|.-+.+.|+.+.......-.
T Consensus        87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr  166 (370)
T COG5276          87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR  166 (370)
T ss_pred             hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence            445667788899999989999999999875432211  112244567777799999998777788999987654433222


Q ss_pred             ccCCcc---eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134          314 HKEDNG---VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGV  386 (394)
Q Consensus       314 ~~~~~~---~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~v  386 (394)
                      ......   -..+      .|+ +...+..|+-+.|-|+........+.+   ...+.++..+++. +++...  .-+.+
T Consensus       167 ya~~~~d~~~v~I------SGn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvli  237 (370)
T COG5276         167 YALPGGDTHDVAI------SGN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLI  237 (370)
T ss_pred             eccCCCCceeEEE------ecC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEE
Confidence            211111   2222      244 555567889999999987755444433   4478999999887 444432  23444


Q ss_pred             EeCCC
Q 016134          387 WKLLA  391 (394)
Q Consensus       387 Wd~~~  391 (394)
                      -|.+.
T Consensus       238 vd~s~  242 (370)
T COG5276         238 VDVSG  242 (370)
T ss_pred             EecCC
Confidence            44443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.44  E-value=14  Score=35.70  Aligned_cols=238  Identities=11%  Similarity=0.024  Sum_probs=120.3

Q ss_pred             ceeeeccccccccccCCC-eecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---------
Q 016134          128 TSKKTTLKNVCCHWLLGN-CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---------  197 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~-~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---------  197 (394)
                      .+..+. ++|++.++|-+ ...|+....|++.|+.++..+...+..-.  -..+.|.++++.|+-...+..         
T Consensus       125 ~~~~~~-~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  125 SLGGFS-VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEE-ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             Eeeeee-ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            444556 89999998865 55666777899999999833333333221  223999999888776654441         


Q ss_pred             ----eeecCCCcE---EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEE-EeC--C-CeEEEEeCCC
Q 016134          198 ----AWNIESSAE---FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCS-GSM--D-NTIRVWELDT  264 (394)
Q Consensus       198 ----vWd~~~~~~---~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~s-gs~--D-g~V~iwd~~~  264 (394)
                          .|.+.+...   +.+....                    .......+..+  +++|+. ...  + ..+.+.|+..
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~--------------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPD--------------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TT--------------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             cEEEEEECCCChHhCeeEEeecC--------------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                244433321   1111111                    11113344444  455443 222  2 3577888876


Q ss_pred             C----ceeEEEcCCCCCc-EEEEEcCCEEEE-Ee---CCCcEEEEEeCCCce--ee-EeecccCCcceEEEEeeECCCCC
Q 016134          265 L----EPVMTLNDHTDAP-MSLLCWDQFLLS-CS---LDHTIKVWFATGRGN--LE-AAYTHKEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       265 ~----~~~~~~~~h~~~v-~~l~~~~~~l~s-~s---~Dg~i~vwd~~~~~~--~~-~~~~~~~~~~~~~~~~~~s~~g~  332 (394)
                      .    .....+......+ ..+...+..|+. ..   ..+.|...++.....  .. .+..+........+    ...+.
T Consensus       262 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~----~~~~~  337 (414)
T PF02897_consen  262 GGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV----SLFKD  337 (414)
T ss_dssp             TTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE----EEETT
T ss_pred             cCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE----EEECC
Confidence            4    2333333333333 445455654433 32   245677777776653  22 33333332233332    22344


Q ss_pred             cEEEEEeCCC--eEEEEECCCCceeEEEec--CCcEEEEEECCCC---EEEEEeC--CCeEEEEeCCCC
Q 016134          333 PVLICACNDN--TVHLYELPSFMERGRIFS--KHEVRVIEIGPDK---LFFTGDG--AGMLGVWKLLAK  392 (394)
Q Consensus       333 ~~l~sgs~dg--~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~---~l~tgs~--Dg~I~vWd~~~~  392 (394)
                      .+++.-..++  .|+++++..+.....+..  ...|..+...++.   +|...+.  -.++..||+.+.
T Consensus       338 ~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  338 YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            4666665554  578889884444444444  4446666655655   3333433  345666676654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.32  E-value=14  Score=35.32  Aligned_cols=144  Identities=13%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------CCE--EEEEe-CC---CcEEEEEeCCC-ceeeEe
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------DQF--LLSCS-LD---HTIKVWFATGR-GNLEAA  311 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~~~--l~s~s-~D---g~i~vwd~~~~-~~~~~~  311 (394)
                      ..+++....++-+.+||+. ++.++.+..  +.+..+..-      ++.  |+.++ .+   .+|++|-+... ..+..+
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            3577778888999999997 677777752  344444332      332  34443 32   57999988632 233332


Q ss_pred             ecc-----cCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECC---CC----ceeEEEecCCcEEEEEECCCC-EEEE
Q 016134          312 YTH-----KEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELP---SF----MERGRIFSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       312 ~~~-----~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~---~~----~~~~~~~~~~~v~~l~~sp~~-~l~t  377 (394)
                      ...     ........+|..-++ +|..+++....+|.+..|.+.   .+    +++.++.....+..+...... .|+.
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYv  224 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYV  224 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEE
Confidence            211     111224455544454 566677778889999888775   22    345556557789999888776 9999


Q ss_pred             EeCCCeEEEEeCCC
Q 016134          378 GDGAGMLGVWKLLA  391 (394)
Q Consensus       378 gs~Dg~I~vWd~~~  391 (394)
                      +-++--|.-|+.+.
T Consensus       225 gEE~~GIW~y~Aep  238 (381)
T PF02333_consen  225 GEEDVGIWRYDAEP  238 (381)
T ss_dssp             EETTTEEEEEESSC
T ss_pred             ecCccEEEEEecCC
Confidence            99997777766654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.29  E-value=3.5  Score=40.25  Aligned_cols=138  Identities=12%  Similarity=0.084  Sum_probs=79.6

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                      +..|.....+.-.|++.|+.+.++..|...+  +.|.         ...-+.|-.+..|.-.|.+-..............
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~  560 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK  560 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence            4456666677778888899999888776653  3333         1223344455666666765433111111111111


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      +...+...-..... ++|.++..|-|++||.-.-.....++. ...|..+..+.+|  .|+||  ...+.+-|+.
T Consensus       561 tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         561 TKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             ccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            11111111122333 899999999999999655444444444 6779999999999  44444  3456666654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.23  E-value=6  Score=34.78  Aligned_cols=139  Identities=9%  Similarity=0.048  Sum_probs=76.5

Q ss_pred             ccccccccCCCeecCCC-----CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEE-eCCCce--ee--cCCC
Q 016134          135 KNVCCHWLLGNCVRGDE-----CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSG-SRDGTA--WN--IESS  204 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~-----~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~v--Wd--~~~~  204 (394)
                      ..|.++|.+....+-..     -+.++.|-.....+.+.   ..-.--+.|+|+.+.+.++-- +.+-+|  ||  .++|
T Consensus       116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG  192 (310)
T KOG4499|consen  116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW---NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG  192 (310)
T ss_pred             cCCCCceeeeeeccccccccccccEEEEeccCCCceeee---hhccCCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence            56777775544333221     12445554433322222   122233567888776665543 444445  66  5555


Q ss_pred             cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134          205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  284 (394)
                      .....    ..|..+.-+.      ..+.....=.+|.-++++.++.-..++|...|..+++.+.+++-....|++++|-
T Consensus       193 ~~snr----~~i~dlrk~~------~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  193 DLSNR----KVIFDLRKSQ------PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             cccCc----ceeEEeccCC------CcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            43210    0111111100      0001111112333347888888888999999999999999999899999999998


Q ss_pred             CC
Q 016134          285 DQ  286 (394)
Q Consensus       285 ~~  286 (394)
                      |+
T Consensus       263 Gk  264 (310)
T KOG4499|consen  263 GK  264 (310)
T ss_pred             CC
Confidence            54

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.14  E-value=1.2  Score=27.16  Aligned_cols=41  Identities=17%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEE
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEI  369 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~  369 (394)
                      |+++.++++.-.+++|.++|..+++.+..+........+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            46665666666789999999999888877766555555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=90.79  E-value=0.71  Score=29.58  Aligned_cols=29  Identities=17%  Similarity=0.206  Sum_probs=24.0

Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      ...|+|... +||.+..+|.|.||.+ +++.
T Consensus        16 ~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   16 CMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             EEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            345799998 9999999999999999 4443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.56  E-value=12  Score=34.84  Aligned_cols=116  Identities=9%  Similarity=0.036  Sum_probs=66.2

Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC-ceeecCCCc-EEEecCCCCcEEEEEEcCCEEEEEecCC
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG-TAWNIESSA-EFSLDGPVGEVYSMVVANEMLFAGAQDG  233 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-~vWd~~~~~-~~~~~~~~~~v~~l~~~~~~l~~~~~~~  233 (394)
                      .+|-+......++.+..|-..-+.|+||||++.|+.+.... .||...-.. ......   ....+.+          +.
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~---~~~~~~~----------~~  210 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG---RRGFVDF----------DE  210 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC---cceEEEc----------cC
Confidence            34444322355666667667778899999998888776653 353332211 000000   0000000          01


Q ss_pred             CCCCEEEEEec--CCeEEEEeCCC-eEEEEeCCCCceeEEEcCCCCCcEEEEEcC
Q 016134          234 HTRPVTCLAVG--RSRLCSGSMDN-TIRVWELDTLEPVMTLNDHTDAPMSLLCWD  285 (394)
Q Consensus       234 h~~~V~~l~~~--~~~l~sgs~Dg-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~  285 (394)
                      ..+..-.++.+  +++.+++-.+| .|.+|+.+ ++++..++.....+++++|-+
T Consensus       211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            12222233444  45554444444 99999998 999999887778889999874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=89.62  E-value=20  Score=34.43  Aligned_cols=141  Identities=15%  Similarity=0.111  Sum_probs=87.7

Q ss_pred             CCeEEEEeC---CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE-eCCCcEEEEEeCCCceee-E----eec
Q 016134          245 RSRLCSGSM---DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC-SLDHTIKVWFATGRGNLE-A----AYT  313 (394)
Q Consensus       245 ~~~l~sgs~---Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~Dg~i~vwd~~~~~~~~-~----~~~  313 (394)
                      ++.++.+..   ++++.+.|..+.+.+.+...-..+ ..+++.  ++.++.+ ..++.|.+.|........ .    ...
T Consensus       127 ~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~  205 (381)
T COG3391         127 GKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV  205 (381)
T ss_pred             CCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence            545554444   789999999998888875543334 777777  6655544 478999999976544332 0    111


Q ss_pred             ccCCcceEEEEeeECCCCCcEEEEEeCC--CeEEEEECCCCceeEEE-ecCC-cEEEEEECCCC-EEEEE-eCCCeEEEE
Q 016134          314 HKEDNGVLALGGLNDPDGKPVLICACND--NTVHLYELPSFMERGRI-FSKH-EVRVIEIGPDK-LFFTG-DGAGMLGVW  387 (394)
Q Consensus       314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~d--g~I~iwd~~~~~~~~~~-~~~~-~v~~l~~sp~~-~l~tg-s~Dg~I~vW  387 (394)
                      ... ....    .+++++..+.++-..+  +.+.+.|..++...... .... ....+...|++ .+... +..+.+.+-
T Consensus       206 ~~~-P~~i----~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vi  280 (381)
T COG3391         206 GTG-PAGI----AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVI  280 (381)
T ss_pred             CCC-CceE----EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEE
Confidence            111 1222    3589998555544333  68999999988766652 2222 56778999999 44444 344677776


Q ss_pred             eCCC
Q 016134          388 KLLA  391 (394)
Q Consensus       388 d~~~  391 (394)
                      |..+
T Consensus       281 d~~~  284 (381)
T COG3391         281 DGAT  284 (381)
T ss_pred             eCCC
Confidence            6554

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=89.60  E-value=35  Score=37.19  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=80.1

Q ss_pred             CCeEEEEeCCC-----Cce-----eEEE--cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEe-CCCceeeEeecccCCcce
Q 016134          254 DNTIRVWELDT-----LEP-----VMTL--NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFA-TGRGNLEAAYTHKEDNGV  320 (394)
Q Consensus       254 Dg~V~iwd~~~-----~~~-----~~~~--~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~-~~~~~~~~~~~~~~~~~~  320 (394)
                      -|.+.|+|+-.     +++     ++.+  +...++|..++--..+|+++. ..+|.+|++ +....+-.-. ...+..+
T Consensus      1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~~~ligVaF-iD~~~yv 1141 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRDSELIGVAF-IDLPLYV 1141 (1366)
T ss_pred             cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccCCcceeeEE-eccceeE
Confidence            47899999732     222     2222  346678888776655666654 358999999 4443333222 2222222


Q ss_pred             EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134          321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDK---LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+    ..-.+ +|+.|.--..|.+......-....+..    .-.+.++.|--||   .++.+..|+.|+++-...+
T Consensus      1142 ~s~----~~vkn-lIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1142 HSM----KVVKN-LILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred             Eeh----hhhhh-heehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence            222    11233 666676667777776665433333333    3358899998887   8999999999999976654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.43  E-value=2.1  Score=37.66  Aligned_cols=61  Identities=10%  Similarity=0.015  Sum_probs=43.8

Q ss_pred             CCCCCcEEEEEeCCCeEEEEECCCCceeEEE---------------ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          328 DPDGKPVLICACNDNTVHLYELPSFMERGRI---------------FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       328 s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~---------------~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ...+. +|++-+.+|.+++||+.+.+.+..-               .....|..+.++.+| -|++- .+|....|+.+
T Consensus        19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence            34566 7888889999999999988654432               123568999999889 44444 45778888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.37  E-value=15  Score=32.49  Aligned_cols=52  Identities=17%  Similarity=0.194  Sum_probs=40.9

Q ss_pred             CCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC---EEEEEeC
Q 016134          328 DPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK---LFFTGDG  380 (394)
Q Consensus       328 s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~---~l~tgs~  380 (394)
                      +.+|. +.++.-..++|...|..+++.+.++.. ...|++++|--.+   +.+|+..
T Consensus       220 D~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  220 DTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             ccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            55787 777777789999999999999988877 5679999998764   4445443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.09  E-value=10  Score=30.31  Aligned_cols=55  Identities=13%  Similarity=0.090  Sum_probs=36.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCC----CEEEEEeCCCeEEEEeC
Q 016134          334 VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD----KLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~----~~l~tgs~Dg~I~vWd~  389 (394)
                      .|+.|+ ...|..||+.....+......+.|+++.+..-    .-++..+.+..|.-||.
T Consensus        66 ~LliGt-~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~  124 (136)
T PF14781_consen   66 CLLIGT-QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY  124 (136)
T ss_pred             EEEEec-cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence            677666 56899999998877766666778888877431    24444445555655554

>PRK13616 lipoprotein LpqB; Provisional

Probab=88.73  E-value=17  Score=37.19  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             cceeeeccccccccccCCCee--cCCCC--CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCV--RGDEC--RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD  195 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~--~g~~~--~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D  195 (394)
                      ..+.+.+ .++++..++....  ++..+  ..|.+++....  ......+.  ..+.-.|+|+|+.|++.+..
T Consensus       350 ~~vsspa-iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g~--~~t~PsWspDG~~lw~v~dg  417 (591)
T PRK13616        350 GNITSAA-LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEGH--SLTRPSWSLDADAVWVVVDG  417 (591)
T ss_pred             cCcccce-ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecCC--CCCCceECCCCCceEEEecC
Confidence            4566666 8888888764432  22223  34555555333  22223333  38889999999988887643

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=88.24  E-value=0.3  Score=45.23  Aligned_cols=26  Identities=38%  Similarity=0.798  Sum_probs=22.9

Q ss_pred             CCCceeEEEeeeCccCC-CCCcccccc
Q 016134           34 PTNKVVCVYVLEGRCNR-NPCRFAHTE   59 (394)
Q Consensus        34 ~~~~~~~~~~~~~~~~~-~~~~~~h~~   59 (394)
                      ..+..||+||++|.|.. -.|.|+|..
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~  100 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY  100 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh
Confidence            56778999999999987 899999964

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.90  E-value=38  Score=35.50  Aligned_cols=87  Identities=16%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCc-eeecCC--CcEEEecCCCCcEEEEEEcCC-EEEEEecCCCCCCEEEEEec-----C
Q 016134          175 KAVSGIALPLRSDKLFSGSRDGT-AWNIES--SAEFSLDGPVGEVYSMVVANE-MLFAGAQDGHTRPVTCLAVG-----R  245 (394)
Q Consensus       175 ~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~--~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~~h~~~V~~l~~~-----~  245 (394)
                      -.|..|.++|+|++|+-.|..+. |-.+..  +..-.+.+....+.|-.+.-+ .++.   ..+...|..+.|+     +
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~---~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT---SNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc---CCCCceEEEEEEcCCCCCC
Confidence            46888999999999999998886 222211  111112222223333333222 2221   1456788999997     4


Q ss_pred             CeEEEEeCCCeEEEEeCCC
Q 016134          246 SRLCSGSMDNTIRVWELDT  264 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~  264 (394)
                      ..|+.=..|+++|+||+..
T Consensus       162 ~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CeEEEEecCCEEEEEecCC
Confidence            6788888999999999965

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=87.76  E-value=13  Score=37.89  Aligned_cols=58  Identities=5%  Similarity=-0.073  Sum_probs=33.1

Q ss_pred             eeECCCCCcEEEEEeCC------------CeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEE
Q 016134          325 GLNDPDGKPVLICACND------------NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGV  386 (394)
Q Consensus       325 ~~~s~~g~~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~v  386 (394)
                      ..|+|+|. .|++....            +.+.+.++..++...  .....|..+.|+||| .|+... +++|.+
T Consensus       402 PsWspDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        402 PSWSLDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ceECCCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            34689977 45544322            233333444333322  224579999999999 555544 466665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=87.52  E-value=25  Score=32.96  Aligned_cols=206  Identities=14%  Similarity=0.074  Sum_probs=101.9

Q ss_pred             CCCCCeEEEEEcCCCceEEEEeccc---C----CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGH---E----KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVY  217 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h---~----~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~  217 (394)
                      |...-.|.+||..+- .+..++.--   .    .....++++.|+++++..-..-.    |-|++.++.+......+-..
T Consensus        63 G~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~  141 (342)
T PF06433_consen   63 GERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL  141 (342)
T ss_dssp             EEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE
T ss_pred             ccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE
Confidence            344447999999875 555433221   1    12234577788888776654443    67777776653322222111


Q ss_pred             EEEE--------cCC-EEEEEecC--CCCC------------CEE-EEEec--CCeEEEEeCCCeEEEEeCCCCce--eE
Q 016134          218 SMVV--------ANE-MLFAGAQD--GHTR------------PVT-CLAVG--RSRLCSGSMDNTIRVWELDTLEP--VM  269 (394)
Q Consensus       218 ~l~~--------~~~-~l~~~~~~--~h~~------------~V~-~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~--~~  269 (394)
                      -.-.        +.| .+++...+  ++..            ++. .-++.  +..++--+.+|.|+--|+...+.  ..
T Consensus       142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~  221 (342)
T PF06433_consen  142 IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK  221 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred             EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence            1111        122 22222222  2111            110 11111  23455567888888888865432  22


Q ss_pred             EEcCCC----------CCcEEEEEc--CCEEEEEe---C-----C--CcEEEEEeCCCceeeEeecccCCcceEEEEeeE
Q 016134          270 TLNDHT----------DAPMSLLCW--DQFLLSCS---L-----D--HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN  327 (394)
Q Consensus       270 ~~~~h~----------~~v~~l~~~--~~~l~s~s---~-----D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (394)
                      .+..-+          +.-.-++++  .+.|.+--   .     |  ..|-++|+.+.+.+..+.... +...+.+    
T Consensus       222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~V----  296 (342)
T PF06433_consen  222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAV----  296 (342)
T ss_dssp             EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEE----
T ss_pred             cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEE----
Confidence            222110          112224444  33333321   1     1  147777888888877776432 2333443    


Q ss_pred             CCCCCcEEEEEe-CCCeEEEEECCCCceeEEEec
Q 016134          328 DPDGKPVLICAC-NDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       328 s~~g~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      +.+.+++|++.+ .++.|.+||..+++.+..+..
T Consensus       297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            567777776654 579999999999999888876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=87.09  E-value=22  Score=31.89  Aligned_cols=154  Identities=12%  Similarity=0.087  Sum_probs=82.7

Q ss_pred             CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCcEEEEEc-CCEEEEEe-CCCcEEEEEeCCCc
Q 016134          233 GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDH-TDAPMSLLCW-DQFLLSCS-LDHTIKVWFATGRG  306 (394)
Q Consensus       233 ~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~-~~~l~s~s-~Dg~i~vwd~~~~~  306 (394)
                      +-...+..|+|+   +.++++....+.|..++.+ ++.++.+.-. .+..-.|++. +..++... .++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            444568888886   3367777778889888874 7877776533 3557788888 44555555 48899999984322


Q ss_pred             e---e---eEee-ccc--CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC---CceeEEEec---------CCcEE
Q 016134          307 N---L---EAAY-THK--EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS---FMERGRIFS---------KHEVR  365 (394)
Q Consensus       307 ~---~---~~~~-~~~--~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~---~~~~~~~~~---------~~~v~  365 (394)
                      .   .   ..+. ...  .....-.+  +|++.++.++ .+-+..-..||.+..   .........         ...+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGl--a~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGL--AYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEE--EEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             cccchhhceEEecccccCCCcceEEE--EEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            1   1   1111 111  11112222  3578777444 456666677777654   212111111         23588


Q ss_pred             EEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134          366 VIEIGPDK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       366 ~l~~sp~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      +++++|..  +++.+..+..|..+|.+
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEECCC
Confidence            99999975  77777788888777743

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=86.31  E-value=26  Score=35.92  Aligned_cols=98  Identities=10%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeC-----C----CceeeEeec
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW----DQFLLSCSLDHTIKVWFAT-----G----RGNLEAAYT  313 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~-----~----~~~~~~~~~  313 (394)
                      .++-+....+.|||.+.+....+.. ...+.|.++.|.    ++.+++.+....|.++--.     +    ...++.+..
T Consensus        44 a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i  123 (631)
T PF12234_consen   44 AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDI  123 (631)
T ss_pred             EEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEe
Confidence            3333445589999999877554432 356889999997    7888888999999998431     1    112222221


Q ss_pred             cc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          314 HK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       314 ~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      .. .++.+-  ...|-++|. +++ |+ .+.+.|+|-.
T Consensus       124 ~~~T~h~Ig--ds~Wl~~G~-LvV-~s-GNqlfv~dk~  156 (631)
T PF12234_consen  124 SSHTPHPIG--DSIWLKDGT-LVV-GS-GNQLFVFDKW  156 (631)
T ss_pred             ecCCCCCcc--ceeEecCCe-EEE-Ee-CCEEEEECCC
Confidence            11 111222  223577886 444 33 4679998754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.18  E-value=0.067  Score=51.30  Aligned_cols=133  Identities=10%  Similarity=0.072  Sum_probs=88.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      +.-++.++.+..|..||-. ++....+. .++....++|+   +..++.+-..+.+.+||+.+....+.-.+....... 
T Consensus        46 ~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl-  122 (615)
T KOG2247|consen   46 GHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL-  122 (615)
T ss_pred             CCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH-
Confidence            3347777888899999954 44443333 44556677776   345556667889999999764332222222221111 


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCCEEEEEeCCCeE
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDKLFFTGDGAGML  384 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~~l~tgs~Dg~I  384 (394)
                         ..|++... .++.+...+.+.|++..+.+...... +...++++++.+.++.+.++.|..+
T Consensus       123 ---l~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L  182 (615)
T KOG2247|consen  123 ---LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL  182 (615)
T ss_pred             ---HhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence               23577776 77778889999999988876665554 4667999999999977777776544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=85.44  E-value=3.3  Score=25.89  Aligned_cols=29  Identities=17%  Similarity=0.289  Sum_probs=24.5

Q ss_pred             cEEEEEECCCC----EEEEEeCCCeEEEEeCCC
Q 016134          363 EVRVIEIGPDK----LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       363 ~v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~  391 (394)
                      .|+++.|+|+.    +|+.+-.-+.|.|+|+.+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58899999743    888888889999999974

It contains a characteristic DLL sequence motif.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=85.17  E-value=36  Score=32.54  Aligned_cols=146  Identities=11%  Similarity=0.043  Sum_probs=71.5

Q ss_pred             CCe-EEEEeCCC--eEEEEeCCCCceeEEEcCCCC-C-cEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134          245 RSR-LCSGSMDN--TIRVWELDTLEPVMTLNDHTD-A-PMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG  319 (394)
Q Consensus       245 ~~~-l~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~-~-v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  319 (394)
                      ++. |+.+..|+  .+.+.|+.+++..+--.+... . -..++...+.++-......|+-.|+.+.+..........-..
T Consensus        47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g  126 (386)
T PF14583_consen   47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG  126 (386)
T ss_dssp             S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred             CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence            444 45555455  566668888776554332211 1 122222255665555567888889988765443333332222


Q ss_pred             eEEEEeeECCCCCcEEEEEe---C-------------------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EE
Q 016134          320 VLALGGLNDPDGKPVLICAC---N-------------------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LF  375 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs---~-------------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l  375 (394)
                      ...  +..+.++. .++-.-   .                   ...|.-.|+.+++....+.....+..+.|+|..  +|
T Consensus       127 ~gt--~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li  203 (386)
T PF14583_consen  127 YGT--WVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLI  203 (386)
T ss_dssp             EEE--EEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEE
T ss_pred             ccc--eeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEE
Confidence            111  12255666 333211   1                   224666788888777666668889999999987  55


Q ss_pred             EEEeC---CCe-EEEEeCCCCC
Q 016134          376 FTGDG---AGM-LGVWKLLAKP  393 (394)
Q Consensus       376 ~tgs~---Dg~-I~vWd~~~~~  393 (394)
                      +.|-+   |.. -|||-+++.+
T Consensus       204 ~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  204 MFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             EEEE-S-TTTSS-SEEEEETTS
T ss_pred             EEeccCCcceeceEEEEEEcCC
Confidence            55432   221 3677766553

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.10  E-value=22  Score=37.54  Aligned_cols=112  Identities=8%  Similarity=-0.001  Sum_probs=69.3

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC--------cEEEEEc------------------CCEEEEEeCCCcEE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA--------PMSLLCW------------------DQFLLSCSLDHTIK  298 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~--------v~~l~~~------------------~~~l~s~s~Dg~i~  298 (394)
                      ++.|+.++.++.|.-.|.++++.+-++......        ...+.+.                  +..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            667788888899999999999988776532211        1112222                  34788888999999


Q ss_pred             EEEeCCCceeeEeeccc----------CCcceEEEEeeECC--CCCcEEEEEeC----------CCeEEEEECCCCceeE
Q 016134          299 VWFATGRGNLEAAYTHK----------EDNGVLALGGLNDP--DGKPVLICACN----------DNTVHLYELPSFMERG  356 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~--~g~~~l~sgs~----------dg~I~iwd~~~~~~~~  356 (394)
                      -.|.++++.+..+....          .........  -.|  .+. .++.|+.          +|.|+-+|+++++++-
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~t--s~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPT--SPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccc--cCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999988775542210          000000000  011  122 4555532          6889999999998887


Q ss_pred             EEe
Q 016134          357 RIF  359 (394)
Q Consensus       357 ~~~  359 (394)
                      .+.
T Consensus       351 ~~~  353 (764)
T TIGR03074       351 AWD  353 (764)
T ss_pred             EEe
Confidence            664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.22  E-value=8.4  Score=33.85  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=45.0

Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE-------c-------CCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL-------N-------DHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~-------~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                      ++..+...+++|++-+.+|.+++||+.+++++..-       .       .....|..+...  |.-+++-+ +|....|
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            55556777899999999999999999987764322       1       133455556555  44455444 4677888


Q ss_pred             EeCC
Q 016134          301 FATG  304 (394)
Q Consensus       301 d~~~  304 (394)
                      |...
T Consensus        93 ~~~L   96 (219)
T PF07569_consen   93 SPDL   96 (219)
T ss_pred             cccc
Confidence            7643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=83.69  E-value=67  Score=34.40  Aligned_cols=133  Identities=12%  Similarity=0.049  Sum_probs=75.0

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      ..||+++-.  ..+..+....+.....++. ...++.++.++.+...++.... +.....+.....+.|+....-++++.
T Consensus       470 ~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~  546 (1096)
T KOG1897|consen  470 NSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN  546 (1096)
T ss_pred             ccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence            457777654  2334444332222222222 4466667777777777777655 34444444445556655433344544


Q ss_pred             ---EEEEEeCCCeEEEEE-CCCCceeEEEec-----CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          334 ---VLICACNDNTVHLYE-LPSFMERGRIFS-----KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       334 ---~l~sgs~dg~I~iwd-~~~~~~~~~~~~-----~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                         +++.|..+..+.+.- .++...+.....     ...|.-..+-.|. +|.++..||.+.-|-++
T Consensus       547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence               888888776655443 444433333222     3345556666656 99999999998776554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.42  E-value=30  Score=30.15  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CcEEEEEcC-CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---C---eEEEEE-
Q 016134          277 APMSLLCWD-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---N---TVHLYE-  348 (394)
Q Consensus       277 ~v~~l~~~~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---g---~I~iwd-  348 (394)
                      ....+...+ +.|+.+.....|.+|++.+.+. ..+.....-..+..  ..++..|+ +|++--.+   .   .+|+|- 
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~-~~~~~F~Tv~~V~~--l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~N   94 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEEC-PLLCTFSTVGRVLQ--LVYSEAGD-YLVTLEEKNKRSPVDFVRAYFN   94 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCC-ceeEEEcchhheeE--EEeccccc-eEEEEEeecCCccceEEEEEEE
Confidence            445555555 6666656678899999983222 22222222233333  34677888 78775332   2   566651 


Q ss_pred             --CC--CC-----------------------ceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          349 --LP--SF-----------------------MERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       349 --~~--~~-----------------------~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                        ..  ..                       ..+.+++....+.+++..|-. .|+.|+. +.+.+|.+.
T Consensus        95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~  163 (215)
T PF14761_consen   95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLK  163 (215)
T ss_pred             hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence              11  00                       112223335567888888864 6666655 468888764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.21  E-value=41  Score=30.87  Aligned_cols=180  Identities=9%  Similarity=0.006  Sum_probs=99.8

Q ss_pred             EEecccC-CCeEEEEecCCCCEEEEEeCCCc---eeecCC---CcEEEecCCCCcEEEEEEcCCEEEEEecC--------
Q 016134          168 AKLEGHE-KAVSGIALPLRSDKLFSGSRDGT---AWNIES---SAEFSLDGPVGEVYSMVVANEMLFAGAQD--------  232 (394)
Q Consensus       168 ~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~---~~~~~~~~~~~~v~~l~~~~~~l~~~~~~--------  232 (394)
                      ..+.+|- +.|..+.....-.++..| .+-.   +|+...   ...+......+-+..+.++.+..+.+-.+        
T Consensus        35 ~~~vghfg~~vsavdv~~~ya~v~qG-~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDI  113 (370)
T COG5276          35 YAYVGHFGKGVSAVDVRGAYAYVGQG-FILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDI  113 (370)
T ss_pred             eEEeeeccCCcccccccccccccccC-ceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEec
Confidence            4455665 555555553322222111 1111   465542   12233333444566667776655544433        


Q ss_pred             ------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc---eeEEEcCCCCCcEEEEEcCCEEEEEeCCCcE
Q 016134          233 ------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE---PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTI  297 (394)
Q Consensus       233 ------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i  297 (394)
                                  .-.+.-.++..+|+++..+..|.-..+.|+.+.+   +..........-..++.+|++-..+..|+-+
T Consensus       114 S~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL  193 (370)
T COG5276         114 STPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGL  193 (370)
T ss_pred             cCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCe
Confidence                        1113345566678998888866667788886533   3444454555567888899999999999999


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      .+-|+.+......+............  ..+++.. +++..  +--+.+-|....+
T Consensus       194 ~ivDVSnp~sPvli~~~n~g~g~~sv--~vsdnr~-y~vvy--~egvlivd~s~~s  244 (370)
T COG5276         194 TIVDVSNPHSPVLIGSYNTGPGTYSV--SVSDNRA-YLVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             EEEEccCCCCCeEEEEEecCCceEEE--EecCCee-EEEEc--ccceEEEecCCCC
Confidence            99999876554433322222233333  2355543 44433  3346666776654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.13  E-value=24  Score=34.79  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             CeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCc
Q 016134          246 SRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                      ..-++|-.+..|.--|.+- +..+...+ ....++.-.|+      ..+++.++..|-|++||--.-.....+......+
T Consensus       528 eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aI  606 (776)
T COG5167         528 EQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAI  606 (776)
T ss_pred             cceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccce
Confidence            3445566677777677654 22222111 12222222232      6799999999999999954322222222222222


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      .-+.    .+.+|+.+|+++  ...|-+-|++
T Consensus       607 k~id----vta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         607 KHID----VTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             eeeE----eecCCcEEEEee--cceEEEEecc
Confidence            2233    267888555544  4677777765

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.71  E-value=45  Score=31.03  Aligned_cols=107  Identities=8%  Similarity=0.014  Sum_probs=48.8

Q ss_pred             ecCCeEEEEeCC-----CeEEEEeCCCCce---eEEEcCCC---CCcEEEEEcCCEEEEEeC-----CCcEEEEEeCCCc
Q 016134          243 VGRSRLCSGSMD-----NTIRVWELDTLEP---VMTLNDHT---DAPMSLLCWDQFLLSCSL-----DHTIKVWFATGRG  306 (394)
Q Consensus       243 ~~~~~l~sgs~D-----g~V~iwd~~~~~~---~~~~~~h~---~~v~~l~~~~~~l~s~s~-----Dg~i~vwd~~~~~  306 (394)
                      +.+.+++.|+.+     ..+..||+.+.+-   ...+..-.   .......+.+.+.+.|+.     ...+..||+.+.+
T Consensus        71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            344555555543     3566777766442   12221111   111222333566666664     2457788877543


Q ss_pred             eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC----eEEEEECCCCc
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN----TVHLYELPSFM  353 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~  353 (394)
                      -.. +..............  ..+++ +.+.|+.++    .+.+||..+.+
T Consensus       151 W~~-~~~~p~~~r~~~~~~--~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFE-LPDFPGEPRVQPVCV--KLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeE-CCCCCCCCCCcceEE--EECCE-EEEEcCCCCccccceEEEecCCCe
Confidence            221 111111011111111  22455 777777653    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.47  E-value=39  Score=37.13  Aligned_cols=136  Identities=15%  Similarity=0.217  Sum_probs=81.3

Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----C------CEEEEEeCCCcEEEEEeCCCcee---eEeec----c
Q 016134          252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----D------QFLLSCSLDHTIKVWFATGRGNL---EAAYT----H  314 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----~------~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~----~  314 (394)
                      +-|+.+.+|+.+++.....+.+-...|..|...    |      ++++..+.--.|.++-+.-.+..   ..+..    .
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            458899999999977777777766777777654    1      34444444455666654322111   11111    1


Q ss_pred             cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC----CCC---c--------------e---eEEEe--cCCcEEEEE
Q 016134          315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL----PSF---M--------------E---RGRIF--SKHEVRVIE  368 (394)
Q Consensus       315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~----~~~---~--------------~---~~~~~--~~~~v~~l~  368 (394)
                      .....+.++  ....+|+ ++++| .||  .||.+    .++   +              .   +..++  ...+|..++
T Consensus       176 ~dg~~V~~I--~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  176 VDGVSVNCI--TYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             cCCceEEEE--EeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            223334433  3567887 66654 566  44432    111   0              0   11112  145799999


Q ss_pred             ECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          369 IGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       369 ~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +.... .+.+-++.+.|.+|++...+
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             eccccceeeeeccCceEEEEEccCCC
Confidence            98877 89999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	394
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-10
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-06
2h9l_A	329	Wdr5delta23 Length = 329		7e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 30/227 (13%)
Query: 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS 204
           + G   R L  W    G   +  L GH   V    + L   ++ SGSRD T   W+IE+ 
Sbjct: 173 ISGSTDRTLKVWNAETG-ECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETG 229
Query: 205 AEFS-LDGPVGEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGR 245
                L G V  V  +      + +GA D                  GHT  V  L    
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 289
Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATG 304
             + SGS+D +IRVW+++T   + TL  H      +   D  L+S + D T+K+W   TG
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           +        +K  + V  L        K  +I + +D TV L++L +
Sbjct: 350 QCLQTLQGPNKHQSAVTCL-----QFNKNFVITSSDDGTVKLWDLKT 391

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 144 GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT--AW 199
           G  V G   R +  W   +G       EGH   V  + +    +   + +GSRD T   W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 200 NIESSAEFSLDGPVGEVYSMVV---ANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNT 256
            +   +     G   + Y +V         F G   GH   V  ++   + + SGS DNT
Sbjct: 233 KLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 257 IRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
           + VW++  ++ +  L+ HTD   S + +D   +  +S S+D TI++W      N E  YT
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIW---DLENGELMYT 347
Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373
            +    ++ L  L+D      L+ A  D ++  ++   +    R FS H   +  I    
Sbjct: 348 LQGHTALVGLLRLSD----KFLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITT-- 398
Query: 374 LFFTGD 379
            F+  D
Sbjct: 399 -FYVSD 403

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
           GHT  V CL      + +GS D+T+RVW+++T E + TL  H +A + L   +  +++CS
Sbjct: 171 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 230
Query: 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352
            D +I VW      ++      +   G  A   + D D K  ++ A  D T+ ++   S 
Sbjct: 231 KDRSIAVWDMASPTDIT---LRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWN-TST 285
Query: 353 MERGRIFSKHEVRVIEIG-PDKLFFTGDGAGMLGVWKL 389
            E  R  + H+  +  +   D+L  +G     + +W +
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 202 ESSAEFSLDGPVGEVYSMVVANEML----FAGAQDGHTRPVTCLAVG--RSRLCSGSMDN 255
           E+  EF+  GP+G+        E +       A  GH  PVT +      S + S S D 
Sbjct: 74  EAKEEFTSGGPLGQKRD---PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDA 130
Query: 256 TIRVWELDTLEPVMTLNDHTDA--PMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT 313
           TI+VW+ +T +   TL  HTD+   +S     + L SCS D TIK+W   G   +   + 
Sbjct: 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 190
Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           H  D+ V ++  +  P+G  + + A  D T+ ++E+ +
Sbjct: 191 H--DHNVSSVSIM--PNGDHI-VSASRDKTIKMWEVQT 223

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 26/252 (10%)
Query: 144 GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT--AW 199
           G  V G   R +  W   +G       EGH   V  + +    +   + +GSRD T   W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 200 NIESSAEFSLDGPVGEVYSMVV---ANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNT 256
            +   +     G   + Y +V         F G   GH   V  ++   + + SGS DNT
Sbjct: 233 KLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 257 IRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
           + VW++   + +  L+ HTD   S + +D   +  +S S D TI++W      N E  YT
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCISASXDTTIRIW---DLENGELXYT 347
Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373
            +    ++ L  L+D      L+ A  D ++  ++   +    R FS H   +  I    
Sbjct: 348 LQGHTALVGLLRLSD----KFLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITT-- 398
Query: 374 LFFTGDGAGMLG 385
            F+  D   + G
Sbjct: 399 -FYVSDNILVSG 409

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 245
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 246 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 274

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 239
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 240 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 268

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 78  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 256
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 257 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 285

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 61  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 239
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 240 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 268

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 271

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 57  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 235
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 236 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 264

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 60  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 238
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 239 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 267

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 62  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 240
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 241 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 269

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 271

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 271

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNMVYIWNLQT 271

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 66  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 244
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 245 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 273

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 245
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 246 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 274

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 93/210 (44%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 245
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 246 IFANFSVTGGKWI-VSGSEDNLVYIWNLQT 274

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 85  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 263
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYEL 349
                +   GK  ++    DN V+++ L
Sbjct: 264 IFANFSVTGGK-WIVSGSEDNLVYIWNL 290

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 83  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+T+K+W    +G     YT  ++    
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYC 261
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYEL 349
                +   GK  ++    DN V+++ L
Sbjct: 262 IFANFSVTGGK-WIVSGSEDNLVYIWNL 288

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVY--SMVVANE 224
           + GH+  +S +A    S+ L S S D T   W++ S     +L G    V+  +    + 
Sbjct: 64  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 225 MLFAGAQD------------------GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDT 264
           ++ +G+ D                   H+ PV+ +   R  S + S S D   R+W+  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 265 LEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
            + + TL D  + P+S + +    +++L+ +LD+ +K+W    +G     YT  ++    
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW-DYSKGKCLKTYTGHKNEKYC 242
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                +   GK + +    DN V+++ L +
Sbjct: 243 IFANFSVTGGKWI-VSGSEDNMVYIWNLQT 271

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
           E L +   LEGH   V+ +A    + + L S SRD T  +W +    +     PV     
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
                         GH+  V    L    +   S S D T+R+W++ T E       H  
Sbjct: 62  -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
             MS+   D+    ++S S D TIKVW  T +G   A      D  + V  +      D 
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
              +I A ND  V  + L  F +E   I     +  +   PD       G  G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
            AK +
Sbjct: 226 AAKKA 230

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
           E L +   LEGH   V+ +A    + + L S SRD T  +W +    +     PV     
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
                         GH+  V    L    +   S S D T+R+W++ T E       H  
Sbjct: 62  -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
             MS+   D+    ++S S D TIKVW  T +G   A      D  + V  +      D 
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
              +I A ND  V  + L  F +E   I     +  +   PD       G  G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
            AK +
Sbjct: 226 AAKKA 230

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
           E L +   LEGH   V+ +A    + + L S SRD T  +W +    +     PV     
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
                         GH+  V    L    +   S S D T+R+W++ T E       H  
Sbjct: 62  -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
             MS+   D+    ++S S D TIKVW  T +G   A      D  + V  +      D 
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
              +I A ND  V  + L  F +E   I     +  +   PD       G  G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
            AK +
Sbjct: 226 AAKKA 230

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 31/245 (12%)
Query: 162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS 218
           E L +   LEGH   V+ +A    + + L S SRD T  +W +    +     PV     
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF-- 61
Query: 219 MVVANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
                         GH+  V    L    +   S S D T+R+W++ T E       H  
Sbjct: 62  -------------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 277 APMSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDG 331
             MS+   D+    ++S S D TIKVW  T +G   A      D  + V  +      D 
Sbjct: 109 DVMSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 332 KPVLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKL 389
              +I A ND  V  + L  F +E   I     +  +   PD       G  G + +W L
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
Query: 390 LAKPS 394
            AK +
Sbjct: 226 AAKKA 230

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 92/243 (37%), Gaps = 31/243 (12%)
Query: 164 LTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMV 220
           L +   LEGH   V+ +A    + + L S SRD T  +W +    +     PV       
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSF---- 55
Query: 221 VANEMLFAGAQDGHTRPVT--CLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278
                       GH+  V    L    +   S S D T+R+W++ T E       H    
Sbjct: 56  -----------KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 104
Query: 279 MSLLCWDQ---FLLSCSLDHTIKVWFATGRGNLEAAYTHKED--NGVLALGGLNDPDGKP 333
           MS+   D+    ++S S D TIKVW  T +G   A      D  + V  +      D   
Sbjct: 105 MSVDI-DKKASMIISGSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 334 VLICACNDNTVHLYELPSF-MERGRIFSKHEVRVIEIGPDKLFFTGDGA-GMLGVWKLLA 391
            +I A ND  V  + L  F +E   I     +  +   PD       G  G + +W L A
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 392 KPS 394
           K +
Sbjct: 222 KKA 224

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 104/270 (38%), Gaps = 54/270 (20%)
Query: 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFS 208
           G E R +  W   E   ++  L+GHE+ +  +      DKL SGS D T           
Sbjct: 141 GAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV---------- 189
Query: 209 LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT---L 265
                  ++ +      L    +DG T        G+  + +GS+D  +RVW+ +T   +
Sbjct: 190 ------RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLV 242
Query: 266 EPVMTLND----HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319
           E + + N+    H D+  S++     Q ++S SLD ++K+W      N   + T      
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 320 VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF------------SKHEVRVI 367
            +   G  D     VL  A   N  ++  L    +RG +F              H   VI
Sbjct: 303 EVTYIGHKD----FVLSVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Query: 368 EI--------GPD-KLFFTGDGAGMLGVWK 388
            +        GP+  +F TG G     +WK
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKARIWK 386

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEML 226
           +  LEGHE  V  +A     + L + SRD + W                V+ +   +E  
Sbjct: 98  VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW----------------VWEVDEEDEYE 141
Query: 227 FAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVW--ELDTLEPVMTLNDHTDAPMSLL 282
                + HT+ V  +    S+  L S S D+T++++  E D      TL  H     SL 
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 283 CWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKED---NGVLALGGLNDPDGKPVLI 336
            +D   Q L SCS D T+++W     GN +       D     +  L G +      +  
Sbjct: 202 -FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 337 C--------ACNDNTVHLY--------ELPSFMERGRIFSKH--EVRVIEIGPDK--LFF 376
           C        AC D+ + ++        + P+F     +   H  +V  +   P +  L  
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 377 TGDGAGMLGVWK 388
           +    G +  WK
Sbjct: 321 SCSDDGEVAFWK 332

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Query: 206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELD 263
           +F + GP G ++   +  E    G   GH  P++ L    +   L S S D T+R+W   
Sbjct: 219 KFVIPGPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 264 TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
                     H+ + +S   W  D  ++SCS+D ++++W       L  +      +GV 
Sbjct: 278 NGNSQNCFYGHSQSIVSA-SWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV----DGVP 332
Query: 322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR 357
              G    DG+   + A  D  V++Y+L     + R
Sbjct: 333 IFAGRISQDGQKYAV-AFMDGQVNVYDLKKLNSKSR 367

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-23
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-22
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-20
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-23
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-21
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-21
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-19
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-23
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-16
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-13
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	6e-23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-20
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-15
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-15
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-22
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	4e-15
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-22
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-19
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-12
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	8e-21
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-17
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-15
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-14
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	7e-12
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-10
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-20
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-18
3ow8_A	321	WD repeat-containing protein 61; structural genomi	9e-09
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-08
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-20
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-17
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	6e-12
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-11
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-07
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	3e-20
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-17
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-16
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-15
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	7e-13
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-10
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	5e-20
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-19
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-16
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-13
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-19
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-17
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-14
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-19
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-16
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	7e-15
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-14
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-19
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-19
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-17
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-17
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-07
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-19
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-18
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	7e-17
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	4e-15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-08
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	4e-18
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-11
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-19
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-18
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-15
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-06
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	7e-19
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-17
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	4e-16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	8e-19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-15
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	3e-12
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	9e-19
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	6e-18
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-11
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-11
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	1e-18
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	4e-18
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	1e-16
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	9e-16
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	6e-07
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-18
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-17
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-17
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-17
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	9e-15
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-12
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-18
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	8e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	6e-12
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-09
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-18
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-18
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-15
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-05
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-18
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-17
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	8e-18
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	5e-17
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-15
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-13
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-17
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-17
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-14
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-14
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-11
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-17
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	7e-10
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	7e-17
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-15
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-14
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-14
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-09
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	9e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-15
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-14
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-16
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	4e-16
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-15
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-08
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	7e-07
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-16
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-13
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-12
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-12
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-09
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-16
3jro_A	753	Fusion protein of protein transport protein SEC13	8e-16
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-13
3jro_A	753	Fusion protein of protein transport protein SEC13	6e-12
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-11
3jro_A	753	Fusion protein of protein transport protein SEC13	8e-04
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-16
2pm7_B	297	Protein transport protein SEC13, protein transport	5e-14
2pm7_B	297	Protein transport protein SEC13, protein transport	4e-12
2pm7_B	297	Protein transport protein SEC13, protein transport	8e-12
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-16
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	7e-08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-16
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-14
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	6e-12
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-09
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	5e-06
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	6e-16
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-13
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-12
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-12
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	1e-15
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	1e-13
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-07
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-14
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-11
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	7e-10
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	9e-14
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-10
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-09
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	7e-15
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	4e-14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-11
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	4e-07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	8e-15
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	5e-11
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-10
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	9e-15
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-08
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-05
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-14
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-13
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	5e-13
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	5e-12
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-13
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-11
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-11
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-09
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-11
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-10
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-04
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	3e-08
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	8e-08
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	9e-08
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	1e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	7e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-05
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	7e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-04

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  100 bits (250), Expect = 2e-23
 Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 33/207 (15%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS-LDGPVGEVYSMVVAN 223
           +  L GH   V  + L     ++ SGSRD T   W+IE+      L G V  V  +    
Sbjct: 192 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249

Query: 224 EMLFAGAQD------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL 265
             + +GA D                  GHT  V  L      + SGS+D +IRVW+++T 
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309

Query: 266 EPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLA 322
             + TL  H      +   D  L+S + D T+K+W   TG+    L+    H   + V  
Sbjct: 310 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH--QSAVTC 367

Query: 323 LGGLNDPDGKPVLICACNDNTVHLYEL 349
           L    + +    +I + +D TV L++L
Sbjct: 368 LQF--NKNF---VITSSDDGTVKLWDL 389

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 97.7 bits (244), Expect = 1e-22
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 28/143 (19%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           L  L GH   V    +  R + + SGS D T   WN E+          GE    +    
Sbjct: 152 LRTLVGHTGGVWSSQM--RDNIIISGSTDRTLKVWNAET----------GECIHTL---- 195

Query: 225 MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW 284
                   GHT  V C+ +   R+ SGS D T+RVW+++T + +  L  H  A    + +
Sbjct: 196 -------YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC-VQY 247

Query: 285 D-QFLLSCSLDHTIKVW-FATGR 305
           D + ++S + D  +KVW   T  
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETET 270

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 26/160 (16%)

Query: 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE 206
             + R   +W  GE  +    L+GH+  V    L    +++ SGS D T   W+  +   
Sbjct: 94  IRQHRIDTNWRRGELKS-PKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVT--- 148

Query: 207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE 266
                  G+    +V           GHT  V    +  + + SGS D T++VW  +T E
Sbjct: 149 -------GKCLRTLV-----------GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE 190

Query: 267 PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATGR 305
            + TL  HT     +   ++ ++S S D T++VW   TG+
Sbjct: 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 230

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 37/149 (24%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS-LDGPVGEVYSMVVAN 223
           +  L GH+   SG+ L  + + L SG+ D T   W+I++      L GP           
Sbjct: 312 IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP----------- 358

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND-----HTDAP 278
                   + H   VTCL   ++ + + S D T+++W+L T E +  L            
Sbjct: 359 --------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410

Query: 279 MSLLCWD---QFLLSCSLDHT----IKVW 300
              +            S + T    + V 
Sbjct: 411 WR-IRASNTKLVCAVGSRNGTEETKLLVL 438

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  101 bits (253), Expect = 3e-23
 Identities = 45/265 (16%), Positives = 86/265 (32%), Gaps = 49/265 (18%)

Query: 165  TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
             + +   GH+KAV  I        L S S D     WN ++     L      V    + 
Sbjct: 994  RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053

Query: 223  -NEMLFAGAQD------------------GHTRPVTCLAV---GRSRLCSGSMDNTIRVW 260
             +  L + + D                   H   V   A+      +  S S D T ++W
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIW 1112

Query: 261  ELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKE 316
              D L P+  L  H         +      L +   +  I++W  + G    +  ++   
Sbjct: 1113 SFDLLSPLHELKGHNGCVRC-SAFSLDGILLATGDDNGEIRIWNVSDG----QLLHSCAP 1167

Query: 317  DNGVLALGGLND--------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE--VRV 366
             +                  PD K +         +  + + +  +  + F  +   ++ 
Sbjct: 1168 ISVEEGTATHGGWVTDVCFSPDSKTL---VSAGGYLKWWNVAT-GDSSQTFYTNGTNLKK 1223

Query: 367  IEIGPD-KLFFTGDGAGMLGVWKLL 390
            I + PD + + T D  G+L + ++L
Sbjct: 1224 IHVSPDFRTYVTVDNLGILYILQVL 1248

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 44/260 (16%), Positives = 78/260 (30%), Gaps = 57/260 (21%)

Query: 165  TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
              +A   GH   V G+          + S D T   W  +   + +    + +   +V  
Sbjct: 873  LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQ 931

Query: 223  --NEMLFAGAQD---------------GHTRPVTCLAV---GRSRLCSGSMDNTIRVWEL 262
                M+ A                        V+C  +       +  G  D  I++ EL
Sbjct: 932  ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIEL 990

Query: 263  DTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDN 318
                   +   H  A    + +    + L+S S D  I+VW + TG              
Sbjct: 991  PNNRVFSSGVGHKKAVRH-IQFTADGKTLISSSEDSVIQVWNWQTGD------------- 1036

Query: 319  GVLALGGLND--------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE--VRVIE 368
              + L    +         D +  L+    D TV ++ + +     R F+ H+  V    
Sbjct: 1037 -YVFLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVWNVITG-RIERDFTCHQGTVLSCA 1092

Query: 369  IGPD-KLFFTGDGAGMLGVW 387
            I  D   F +        +W
Sbjct: 1093 ISSDATKFSSTSADKTAKIW 1112

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 94.1 bits (234), Expect = 6e-21
 Identities = 42/266 (15%), Positives = 79/266 (29%), Gaps = 58/266 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES--------------SAEFSLD 210
              + GH  +V+        + L S S DGT   W++ S              S+E   +
Sbjct: 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795

Query: 211 GPVGEVYSMVVA--NEMLFAGAQD------------------GHTRPVTCLAV---GRSR 247
                V     +   + +   A++                  GH   +            
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-L 854

Query: 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATG 304
                    + +W +D+   V     H       + +       L+ S D TI+VW  T 
Sbjct: 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHG-VMFSPDGSSFLTASDDQTIRVW-ETK 912

Query: 305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE- 363
           +    +A   K++  V         +   +++   N   + L    +    G+I    E 
Sbjct: 913 KVCKNSAIVLKQEIDV-VFQ----ENET-MVLAVDNIRGLQLIAGKT----GQIDYLPEA 962

Query: 364 -VRVIEIGPD-KLFFTGDGAGMLGVW 387
            V    + P  +    GD  G + + 
Sbjct: 963 QVSCCCLSPHLEYVAFGDEDGAIKII 988

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 47/243 (19%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSMVVAN 223
           L  ++ HE  V   A       + + S D     W+  +     +               
Sbjct: 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-------------- 695

Query: 224 EMLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279
                   D H+  V C           L +GS D  +++W+L+  E   T+  HT++  
Sbjct: 696 --------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747

Query: 280 SLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND------- 328
               +   D+ L SCS D T+++W   +              +       +         
Sbjct: 748 H-CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806

Query: 329 -PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE--VRVIEIGPD-KLFFTGDGAGML 384
             DG   +I A  +  + L+++ +      I + H   ++  +  P   L         +
Sbjct: 807 SADGD-KIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCV 864

Query: 385 GVW 387
            +W
Sbjct: 865 ELW 867

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 36/194 (18%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
              +  H  AV          ++ S   D T   +  E+  +                  
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL----------------- 650

Query: 225 MLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                    H   V C A     S + + S D  +++W+  T + V T ++H++      
Sbjct: 651 ----LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC-C 705

Query: 283 CW-----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC 337
            +        L + S D  +K+W    +      + H   N V        PD + +L  
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--TNSVNHCR--FSPDDE-LLAS 760

Query: 338 ACNDNTVHLYELPS 351
              D T+ L+++ S
Sbjct: 761 CSADGTLRLWDVRS 774

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQF 287
            HT  V        G+ R+ S   D T++V++ +T E ++ +  H D  +       D +
Sbjct: 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671

Query: 288 LLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLNDPDGK-PVLICACNDNT 343
           + +CS D  +K+W  ATG+     +    H E                  +L    ND  
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDE---HSEQVNCCHFT----NKSNHLLLATGSNDFF 724

Query: 344 VHLYELPSFMERGRIFSKHE--VRVIEIGPD-KLFFTGDGAGMLGVWKL 389
           + L++L    E       H   V      PD +L  +    G L +W +
Sbjct: 725 LKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 247 RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FA 302
                    TI+      + P      HTDA     C+    Q + SC  D T++V+   
Sbjct: 593 LYLEWINKKTIKNLSRLVVRP------HTDAVYH-ACFSQDGQRIASCGADKTLQVFKAE 645

Query: 303 TGR--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS 360
           TG    +++A   H+++    A       D    +     D  V +++  +       + 
Sbjct: 646 TGEKLLDIKA---HEDEVLCCAFS----SDDS-YIATCSADKKVKIWDSATGKLV-HTYD 696

Query: 361 KHEVRV 366
           +H  +V
Sbjct: 697 EHSEQV 702

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 98.0 bits (245), Expect = 3e-23
 Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 43/220 (19%)

Query: 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS-LDGPVGEVYSM 219
           G  + A L+GH++ V  +       K+ S SRDGT   W+ +     + +    G + S 
Sbjct: 7   GYQLSATLKGHDQDVRDVVAV-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNS- 64

Query: 220 VVA----NEMLFAGAQD---------------------GHTRPVTCLAVGRSRLCSGSMD 254
            V      E+L  G +D                     GH   V  L+     + SGS D
Sbjct: 65  -VCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWD 123

Query: 255 NTIRVWELDTLEPVMTLNDHTDAPMSLLC--WD-QFLLSCSLDHTIKVWFATGRGNLEAA 311
            T +VW       V  L  H  +        +     L+ S D TIK+W       +   
Sbjct: 124 KTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW---QNDKVIKT 178

Query: 312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           ++   ++ V  L  +   DG    I   ND  + L ++ +
Sbjct: 179 FSGIHNDVVRHLAVV--DDGH--FISCSNDGLIKLVDMHT 214

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 35/188 (18%)

Query: 165 TMLAKLEGHEKAV-SGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
           +++  L+ H  +V     +    +K  + S D T   W  +   + +  G          
Sbjct: 133 SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIK-TFSG---------- 181

Query: 222 ANEMLFAGAQDGHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                       H   V  LAV       S S D  I++ ++ T + + T   H      
Sbjct: 182 -----------IHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230

Query: 281 LLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338
            +    +  ++SC  D T+++W     G+L+   T      + ++  +   +G   +I  
Sbjct: 231 -IKLLPNGDIVSCGEDRTVRIWSKEN-GSLKQVITLPAI-SIWSVDCM--SNGD--IIVG 283

Query: 339 CNDNTVHL 346
            +DN V +
Sbjct: 284 SSDNLVRI 291

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 22/152 (14%), Positives = 49/152 (32%), Gaps = 38/152 (25%)

Query: 165 TMLAKLEG-HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
            ++    G H   V  +A+ +      S S DG     ++ +                  
Sbjct: 174 KVIKTFSGIHNDVVRHLAV-VDDGHFISCSNDGLIKLVDMHT------------------ 214

Query: 222 ANEMLFAGAQ----DGHTRPVTCLAVGRS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
                  G      +GH   V C+ +  +  + S   D T+R+W  +       +     
Sbjct: 215 -------GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAI 267

Query: 277 APMSLLCW--DQFLLSCSLDHTIKVW-FATGR 305
           +  S+     +  ++  S D+ ++++     R
Sbjct: 268 SIWSV-DCMSNGDIIVGSSDNLVRIFSQEKSR 298

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 27/116 (23%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSMVVAN 223
           L   EGHE  V  I L L +  + S   D T   W+ E+ +    +  P   ++S     
Sbjct: 218 LRTYEGHESFVYCIKL-LPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWS----- 271

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVM--TLNDHTDA 277
                         V C++ G   +  GS DN +R++  +         +     +
Sbjct: 272 --------------VDCMSNGD--IIVGSSDNLVRIFSQEKSRWASEDEIKGELRS 311

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 40/216 (18%)

Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS----LDGPVGEVYSM 219
           ML  L  H +AV  +     +  + + S+D +   W++ S  + +    L G    V  +
Sbjct: 205 MLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262

Query: 220 VVANEMLFAGAQD------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWE 261
              ++ + + + D                  GH R + CL      + SGS DNTIR+W+
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322

Query: 262 LDTLEPVMTLNDHTDAPMSLLCWD-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKE--- 316
           ++    +  L  H +     + +D + ++S + D  IKVW           A T      
Sbjct: 323 IECGACLRVLEGHEELVRC-IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381

Query: 317 ---DNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
                 V  L      D    ++ + +D+T+ +++ 
Sbjct: 382 VEHSGRVFRLQ----FDEF-QIVSSSHDDTILIWDF 412

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 40/228 (17%)

Query: 83  NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWL 142
             LW              R      G       +      +   S  +    K +     
Sbjct: 52  GMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIET 111

Query: 143 LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGI-ALPLRSDKLFSGSRDGTA--W 199
           + +           +W CG     L ++    +   G+  L     K+ SG RD T   W
Sbjct: 112 IES-----------NWRCGRHS--LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIW 158

Query: 200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRV 259
           +  +           E         +L      GHT  V CL      + +GS D+T+RV
Sbjct: 159 DKNT----------LECK------RIL-----TGHTGSVLCLQYDERVIITGSSDSTVRV 197

Query: 260 WELDTLEPVMTLNDHTDAPMSLLCWD-QFLLSCSLDHTIKVW-FATGR 305
           W+++T E + TL  H +A +  L ++   +++CS D +I VW  A+  
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPT 244

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 16/113 (14%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           L  LEGHE+ V  I     + ++ SG+ DG    W++ ++ +         + ++     
Sbjct: 329 LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL----- 381

Query: 225 MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277
                    H+  V  L     ++ S S D+TI +W+             + +
Sbjct: 382 -------VEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPS 427

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
             ++ V CL     ++ SG  DNTI++W+ +TLE    L  HT + + L   ++ +++ S
Sbjct: 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 190

Query: 293 LDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
            D T++VW   TG     L     H     VL L      +   +++    D ++ ++++
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIH---H--CEAVLHL----RFNNG-MMVTCSKDRSIAVWDM 240

Query: 350 PS 351
            S
Sbjct: 241 AS 242

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 95.7 bits (239), Expect = 2e-22
 Identities = 51/201 (25%), Positives = 72/201 (35%), Gaps = 39/201 (19%)

Query: 161 GEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVY 217
            E L +   LEGH   V+ +A    + + L S SRD T   W +        D   G   
Sbjct: 4   NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD-----DQKFGVPV 58

Query: 218 SMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDH 274
                       +  GH+  V    +   G     S S D T+R+W++ T E       H
Sbjct: 59  R-----------SFKGHSHIVQDCTLTADGA-YALSASWDKTLRLWDVATGETYQRFVGH 106

Query: 275 TDAPMSLLCW---DQFLLSCSLDHTIKVWFATGR--GNLEAAYTHKEDNGVLAL----GG 325
               MS +        ++S S D TIKVW   G+    L     H  ++ V  +      
Sbjct: 107 KSDVMS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG---H--NDWVSQVRVVPNE 160

Query: 326 LNDPDGKPVLICACNDNTVHL 346
             D D    +I A ND  V  
Sbjct: 161 KADDDSV-TIISAGNDKMVKA 180

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 55/229 (24%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA-- 222
             +  GH+  V  + +  ++  + SGSRD T   W I+     +L G    V    V   
Sbjct: 100 YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQ--VRVV 157

Query: 223 --------NEMLFAGAQD------------------GHTRPVTCLAV---GRSRLCSGSM 253
                   +  + +   D                  GH   +  L     G + + S   
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGK 216

Query: 254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVW-FATGRGNLE 309
           D  I +W L   + + TL+   D   S L +  +  +L + +    IKV+          
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFS-LAFSPNRYWLAAAT-ATGIKVFSLDPQ----Y 269

Query: 310 AAYTHKEDNGVLALGGLND-------PDGKPVLICACNDNTVHLYELPS 351
                + +    +              DG+  L     DN + ++++ +
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 96.5 bits (241), Expect = 4e-22
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 9/149 (6%)

Query: 166 MLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
                EGH   V  + +    +   + +GSRD T   W +   +     G   +   +  
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254

Query: 222 ANE--MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279
             E    F G   GH   V  ++   + + SGS DNT+ VW++  ++ +  L+ HTD   
Sbjct: 255 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314

Query: 280 SL-LCWD-QFLLSCSLDHTIKVW-FATGR 305
           S     + +  +S S+D TI++W    G 
Sbjct: 315 STIYDHERKRCISASMDTTIRIWDLENGE 343

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 89.2 bits (222), Expect = 1e-19
 Identities = 43/245 (17%), Positives = 75/245 (30%), Gaps = 37/245 (15%)

Query: 137 VCCHWLLGNCVRGDEC--RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR 194
           V  +W     +R      + L              L                 +L     
Sbjct: 41  VSQNWN--KIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLEN 98

Query: 195 DGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV-TCLAVGRSRLCSG 251
                 W            P                    GH   V TCL    + + +G
Sbjct: 99  IFILKNWYNPKF------VPQRTTL--------------RGHMTSVITCLQFEDNYVITG 138

Query: 252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSL-LCWDQFLLSCSLDHTIKVW-FATGR--GN 307
           + D  IRV++    + ++ L+ H     +L       L+S S D T++VW    G     
Sbjct: 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHV 198

Query: 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI 367
            E    H   + V  L  +   + K  ++    DNT+H+++LP          +H+  ++
Sbjct: 199 FEG---HN--STVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252

Query: 368 EIGPD 372
              P+
Sbjct: 253 FHTPE 257

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 26/137 (18%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           +  L+GH   V  + L      L S + DG+   W+    +                   
Sbjct: 345 MYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYH------------- 389

Query: 225 MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVM-TLNDHTDAPMSLLC 283
                    +   +T   V  + L SGS +N   ++ L + + V   +    D   S+  
Sbjct: 390 -------HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF 441

Query: 284 WDQFLLSCSLDHTIKVW 300
             + L++          
Sbjct: 442 KGKTLVAAVEKDGQSFL 458

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 31/191 (16%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           L ++ GH + ++   L   R  +  +   DG+   +           GP  +  +    +
Sbjct: 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY----------QGPPFKFSASDRTH 202

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                         V  +         + +   D  I  ++  + E +  + D  +    
Sbjct: 203 H--------KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254

Query: 281 L---LCWD--QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335
               L W   Q   +   D TI+VW  T    ++     K+  G   +G +   +G+  +
Sbjct: 255 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR--I 312

Query: 336 ICACNDNTVHL 346
           I    D T++ 
Sbjct: 313 ISLSLDGTLNF 323

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 68/240 (28%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
           L  +E  ++ V G        D  K  +   D T   W++ +S    +     +      
Sbjct: 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC--VQKWTLD------ 293

Query: 222 ANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278
                              + V   G  R+ S S+D T+  +EL   E + T++ H    
Sbjct: 294 -----------KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342

Query: 279 MSLLCWDQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKE--------DNGVLALGGLND- 328
            + L  +  L+S S D  I  W  ++   +      H               +    +D 
Sbjct: 343 TA-LTVNP-LISGSYDGRIMEWSSSSMHQD------HSNLIVSLDNSKAQEYSSISWDDT 394

Query: 329 ---------------------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI 367
                                 DG        ND+ + + +  +      +        +
Sbjct: 395 LKVNGITKHEFGSQPKVASANNDGF--TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 24/220 (10%), Positives = 65/220 (29%), Gaps = 37/220 (16%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA-N 223
           L  + GH K ++ + +    + L SGS DG    W+  S            + S+  +  
Sbjct: 332 LKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKA 383

Query: 224 EMLFAGAQDG-----------HTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMT 270
           +   + + D                    +           + D+ + + +  T + + +
Sbjct: 384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKS 442

Query: 271 LNDHTDAPMSLLCWD---QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGL 326
           +  ++      L  +     L   +     K+          +     +     +++   
Sbjct: 443 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF---DLKTPLRAKPSYISIS-- 497

Query: 327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV 366
             P     +        + LY+L S   +   ++    ++
Sbjct: 498 --PSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 534

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 43/221 (19%)

Query: 150 DECRFLHSWFCGEG-LTMLAKLEGHE-KAVSGIAL-PLRSDKLF-SGSRDGTA--WNIES 203
            +  F+     G+  +  + +  GH    V+ +   P++  +   SG   G    W    
Sbjct: 38  GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 97

Query: 204 SAE-FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLC--SGSMDNTI 257
             E  S++  V   +                   P++ ++    GR RLC      DN  
Sbjct: 98  DKESNSVEVNVKSEFQ--------------VLAGPISDISWDFEGR-RLCVVGEGRDNFG 142

Query: 258 RVWELDTLEPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVW-FATGRGNLEAAY 312
                D+   +  ++ H+    +            ++   D ++  +     + +     
Sbjct: 143 VFISWDSGNSLGEVSGHSQRINA-CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 201

Query: 313 THKEDNGVLALGGLND----PDGKPVLICACNDNTVHLYEL 349
            HK+ + V       D    PD    +I   +D  +  ++ 
Sbjct: 202 HHKQGSFV------RDVEFSPDSGEFVITVGSDRKISCFDG 236

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 38/148 (25%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227
                   S I++      + +G   G    ++++S           EV      +    
Sbjct: 484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS----------REV----KTSRW-- 527

Query: 228 AGAQDGHTRPVTCLA------------VGRSRLCSGSMDNTIRVWELDTLEPVM-TLNDH 274
                  T  +  ++            +    + +GS+D  I ++ +     ++  LN H
Sbjct: 528 ----AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583

Query: 275 TDAPMSLLCW--DQFLLSCSLDHTIKVW 300
            D   + L W     L+S   D  IK W
Sbjct: 584 KDGVNN-LLWETPSTLVSSGADACIKRW 610

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 35/159 (22%)

Query: 233 GH-TRPVTCLAV-----GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL----- 281
           GH +  VT +        +  LCSG     + VW     +   ++  +  +   +     
Sbjct: 61  GHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119

Query: 282 --LCWD---QFLL--SCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLND--P 329
             + WD   + L       D+      + +G   G +     H     + A         
Sbjct: 120 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG---H--SQRINAC----HLKQ 170

Query: 330 DGKPVLICACNDNTVHLYELPSFMERG--RIFSKHEVRV 366
                 +   +D +V  Y+ P F      R   K    V
Sbjct: 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 209

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 33/115 (28%)

Query: 163 GLTMLAKLEGHEKAVSGIA----------LPLRSDKLFSGSRDGTA--WNIESSAEFSLD 210
                ++       ++ I+            +  D + +GS D     ++++        
Sbjct: 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR------P 573

Query: 211 GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDT 264
             + +                + H   V  L     S L S   D  I+ W +  
Sbjct: 574 MKIIKAL--------------NAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 89.8 bits (224), Expect = 2e-20
 Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 40/193 (20%)

Query: 167 LAKLEGHEKAVSGIA----LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMV 220
             + + H+ A+  +A        S+ + +GS D     W             +   +S+ 
Sbjct: 25  FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-------ERLDLQWSL- 76

Query: 221 VANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277
                      +GH   V  + +         S S+D  IR+W+L+  + + +++     
Sbjct: 77  -----------EGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPVD 124

Query: 278 PMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP 333
             + L +    Q+L + +    + ++   +G+    +  T      +L++     PDGK 
Sbjct: 125 AWT-LAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTR--GKFILSIA--YSPDGK- 177

Query: 334 VLICACNDNTVHL 346
            L     D  +++
Sbjct: 178 YLASGAIDGIINI 190

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 83.3 bits (207), Expect = 4e-18
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 35/165 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS-LDGPVGEVYSMVVA- 222
              L+   K +  IA       L SG+ DG    ++I +      L+G    + S  +  
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS--LTF 214

Query: 223 ---NEMLFAGAQD------------------GHTRPVTCLAV---GRSRLCSGSMDNTIR 258
              +++L   + D                  GH   V  +A          S S D +++
Sbjct: 215 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVK 273

Query: 259 VWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW 300
           VW++ T   V T  DH D     + +      ++S   D  I ++
Sbjct: 274 VWDVGTRTCVHTFFDHQDQVWG-VKYNGNGSKIVSVGDDQEIHIY 317

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 55.5 bits (135), Expect = 9e-09
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 31/124 (25%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVA- 222
           L  LEGH   +  +     S  L + S DG    ++++ +    +L G    V +  VA 
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN--VAF 256

Query: 223 ---NEMLFAGAQD------------------GHTRPVTCLAV---GRSRLCSGSMDNTIR 258
              +    + + D                   H   V  +     G  ++ S   D  I 
Sbjct: 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS-KIVSVGDDQEIH 315

Query: 259 VWEL 262
           +++ 
Sbjct: 316 IYDC 319

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL------LCWDQFLLSCSLDHTIKVW- 300
               S +N                  H DA  S+          + +++ SLD  +KVW 
Sbjct: 5   HHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK 64

Query: 301 FATGRGNLEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
           +   R +L+ +   H    GV+++          +   +  D  + L
Sbjct: 65  WRDERLDLQWSLEGH--QLGVVSVD--ISHTLP-IAASSSLDAHIRL 106

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 47/203 (23%)

Query: 162 EGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
           E +T+   L+GH   V+ IA  P   D + S SRD T   W +         G       
Sbjct: 26  EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--GIPQRALR 83

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                         GH+  V+ + +   G+    SGS D T+R+W+L T         HT
Sbjct: 84  --------------GHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHT 128

Query: 276 DAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND---- 328
              +S + +   ++ ++S S D TIK+W   G                +     ++    
Sbjct: 129 KDVLS-VAFSSDNRQIVSGSRDKTIKLWNTLGVCKY-----------TVQDESHSEWVSC 176

Query: 329 ----PDGK-PVLICACNDNTVHL 346
               P+   P+++    D  V +
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKV 199

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 39/190 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
             +  GH K V  +A    + ++ SGSRD T   WN                        
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG------VCKYTVQD------- 167

Query: 225 MLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                  + H+  V+C+          + S   D  ++VW L   +       HT    +
Sbjct: 168 -------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220

Query: 281 LLCW--D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336
            +    D     S   D    +W    G    +  YT    + + AL     P+     +
Sbjct: 221 -VTVSPDGSLCASGGKDGQAMLWDLNEG----KHLYTLDGGDIINALC--FSPNRY--WL 271

Query: 337 CACNDNTVHL 346
           CA    ++ +
Sbjct: 272 CAATGPSIKI 281

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 65.2 bits (160), Expect = 6e-12
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 46/153 (30%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
                GH   ++ + + P   D     SG +DG A  W++              +Y++  
Sbjct: 208 KTNHIGHTGYLNTVTVSP---DGSLCASGGKDGQAMLWDLNEGKH---------LYTL-- 253

Query: 222 ANEMLFAGAQDGHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTLND------ 273
                     DG    +  L     R  LC+ +   +I++W+L+    V  L        
Sbjct: 254 ----------DGGD-IINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTS 301

Query: 274 ---HTDAPMSLLCW--D-QFLLSCSLDHTIKVW 300
                    S L W  D Q L +   D+ ++VW
Sbjct: 302 SKAEPPQCTS-LAWSADGQTLFAGYTDNLVRVW 333

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 32/130 (24%), Positives = 43/130 (33%), Gaps = 34/130 (26%)

Query: 191 SGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA----VG 244
           SG   GT   +      E      +                   GH   VT +A      
Sbjct: 9   SGVDLGTENLYFQSMMTE---QMTLRGTLK--------------GHNGWVTQIATTPQFP 51

Query: 245 RSRLCSGSMDNTIRVWELDTLE-----PVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHT 296
              + S S D TI +W+L   E     P   L  H+      +    D QF LS S D T
Sbjct: 52  D-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD-VVISSDGQFALSGSWDGT 109

Query: 297 IKVW-FATGR 305
           +++W   TG 
Sbjct: 110 LRLWDLTTGT 119

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 27/118 (22%)

Query: 246 SRLCSGSMDNTIRVWELDTLEPVM----TLNDHTDAPMSLLC---WDQFLLSCSLDHTIK 298
               SG    T  ++    +   M    TL  H      +     +   +LS S D TI 
Sbjct: 5   HHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTII 64

Query: 299 VWFATGRGNLEAAYTHKEDNGVL--ALGGLND--------PDGKPVLICACNDNTVHL 346
           +W  T           + + G+   AL G +          DG+   +    D T+ L
Sbjct: 65  MWKLT---------RDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRL 112

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 51/230 (22%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           +  LEGHE  V  +A     + L + SRD +   W ++   E+     +           
Sbjct: 98  VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL----------- 146

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVM--TLNDHTDAPM 279
                  + HT+ V  +         L S S D+T++++  +  + V   TL  H     
Sbjct: 147 -------NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198

Query: 280 SLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND-------- 328
           SL  +D   Q L SCS D T+++W     GN +       D     +  L+         
Sbjct: 199 SL-AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257

Query: 329 ----PDGKPVLICACNDNTVHLYEL--------PSFMERGRIFSKHEVRV 366
                     L  AC D+ + +++         P+F     +   H   V
Sbjct: 258 IAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV 306

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 47/205 (22%), Positives = 70/205 (34%), Gaps = 41/205 (20%)

Query: 162 EGLTMLAKLEGH-EKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
           + L +L ++  H +     +A       L S   D     W  E  +             
Sbjct: 3   DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------ 50

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT--LEPVMTLND 273
             +   +L     +GH R V  +A    G   L S S D T  +W+ +    E V TL  
Sbjct: 51  --ICKSVLS----EGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDDFECVTTLEG 103

Query: 274 HTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT---HKED-NGVLALGGL 326
           H +   S + W      L +CS D ++ VW        E       H +D   V      
Sbjct: 104 HENEVKS-VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV-VW--- 158

Query: 327 NDPDGKPVLICACNDNTVHLYELPS 351
             P  + +L  A  D+TV LY    
Sbjct: 159 -HPSQE-LLASASYDDTVKLYREEE 181

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 48/201 (23%), Positives = 69/201 (34%), Gaps = 43/201 (21%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGEV 216
              +      EGH++ V  +A         L S S D T   W          D      
Sbjct: 48  DSWICKSVLSEGHQRTVRKVA--WSPCGNYLASASFDATTCIWKKNQD-----DFECVTT 100

Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT---LEPVMT 270
                          +GH   V  +A    G   L + S D ++ VWE+D     E V  
Sbjct: 101 L--------------EGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSV 145

Query: 271 LNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYT-HKEDNGVLALGG 325
           LN HT      + W    + L S S D T+K++          A    H  ++ V +L  
Sbjct: 146 LNSHTQDVKH-VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAF 202

Query: 326 LNDPDGKPVLICACNDNTVHL 346
             DP G+  L    +D TV +
Sbjct: 203 --DPSGQ-RLASCSDDRTVRI 220

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 74.5 bits (184), Expect = 5e-15
 Identities = 33/157 (21%), Positives = 47/157 (29%), Gaps = 24/157 (15%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
            A LEGHE  V  +A      +L S S D T   W              G   S      
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK---- 242

Query: 225 MLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVM---------TLND 273
                    H+R +  +A  +    L +   D+ IRV++ D                   
Sbjct: 243 -CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301

Query: 274 HTDAPMSLLCW----DQFLLSCSLDHTIKVW-FATGR 305
           H+     +  W       L SCS D  +  W +    
Sbjct: 302 HSQDVNCV-AWNPKEPGLLASCSDDGEVAFWKYQRPE 337

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 68.4 bits (168), Expect = 7e-13
 Identities = 37/217 (17%), Positives = 63/217 (29%), Gaps = 54/217 (24%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
            +    ++ L  H + V  +      + L S S D T   +  E       D        
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED-----DWVCCATLE 191

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELD------------ 263
                         GH   V  LA    G+ RL S S D T+R+W               
Sbjct: 192 --------------GHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSG 236

Query: 264 ---TLEPVMTLN-DHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHK 315
              + + + TL+  H+      + W      L +   D  I+V+         +  ++  
Sbjct: 237 SDPSWKCICTLSGFHSRTIYD-IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295

Query: 316 E------DNGVLALGGLNDPDGKPVLICACNDNTVHL 346
                     V  +   N  +   +L    +D  V  
Sbjct: 296 AHLHQAHSQDVNCV-AWNPKEPG-LLASCSDDGEVAF 330

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 18/114 (15%)

Query: 167 LAKLEG-HEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           +  L G H + +  IA    +  L +   D     +  + +++     P   + + +   
Sbjct: 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD--PQQPTFSLTAHLH-- 299

Query: 224 EMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDH 274
                     H++ V C+A        L S S D  +  W+    E +   + H
Sbjct: 300 --------QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHHHH 345

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 36/230 (15%), Positives = 73/230 (31%), Gaps = 68/230 (29%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           +    GH  A++ +   P   + L S S+D     WNI++    ++ G V          
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---------- 157

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD---- 276
                   +GH   V        G  ++ S  MD+++++W +++   +  + +  D    
Sbjct: 158 --------EGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 208

Query: 277 ------APMSLLCWD------------------QFLLSCSLDHTIKVWFATGRGNLEAAY 312
                     +   D                    +LS S ++ I  W      +     
Sbjct: 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKI 268

Query: 313 THKEDNGVLALGGLN-------------DPDGKPVLICACNDNTVHLYEL 349
              E N  + LG  +             D   K +L        +++++L
Sbjct: 269 KPSESNVTI-LGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDL 316

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 42/221 (19%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES---------SAEFSL 209
              + +   +EGH   V      L  +K+ S   D +   W I S         S +++ 
Sbjct: 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 207

Query: 210 DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVM 269
           +       S  +          D H   V C+      + S S +N I  W+   +E  +
Sbjct: 208 NKTNRPFISQKIHFPDFSTR--DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDI 265

Query: 270 --------------TLNDHTDAPMSLL----CWDQFLLSCSLDHTIKVW-FATGRGNLEA 310
                           +        +      W + L   +    + VW       +   
Sbjct: 266 DKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325

Query: 311 AYT---HKEDNGVLALGGLND--PDGKPVLICACNDNTVHL 346
             T   HK    +           D   +LI  C+D ++  
Sbjct: 326 CTTLTHHKCGAAIRQT----SFSRDSS-ILIAVCDDASIWR 361

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 24/148 (16%)

Query: 170 LEGHEKAVSGIA----LPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVA 222
            E H + + G+            +F+         +   S  E   L   V         
Sbjct: 14  KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY 73

Query: 223 NEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                A   D +T            L        IR+    T++ +     H +A    L
Sbjct: 74  T---CAWTYDSNT--------SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE-L 121

Query: 283 CW----DQFLLSCSLDHTIKVW-FATGR 305
            +       LLS S DH +++W   T  
Sbjct: 122 KFHPRDPNLLLSVSKDHALRLWNIQTDT 149

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 25/149 (16%)

Query: 167 LAKLEGHEKAVSGIALPLRS-DKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
            +  + H   V  +       D + S S +     W      +        E    ++  
Sbjct: 224 FSTRDIHRNYVDCVRW---LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL-- 278

Query: 224 EMLFAGAQDGHTRPVTCLA----VGRSRLCSGSMDNTIRVWELDTLEP----VMTLNDHT 275
                G  D     +  +       +  L  G+    + VW+L+  +P      TL  H 
Sbjct: 279 -----GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333

Query: 276 D-APMSLLCW--D-QFLLSCSLDHTIKVW 300
             A +    +  D   L++   D +I  W
Sbjct: 334 CGAAIRQTSFSRDSSILIAVCDDASIWRW 362

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 89.2 bits (222), Expect = 1e-19
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 30/223 (13%)

Query: 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSA 205
            D+   + S    +G   + K       +      PL    L  G ++  A    I  + 
Sbjct: 20  EDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETD 79

Query: 206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWEL 262
           +         +    + +    + +    T  VTCLA    G   + +G  +  +R+W  
Sbjct: 80  QEGKKYWKLTI-IAELRHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWNK 137

Query: 263 DTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKE 316
                +  LN H    +S + W      ++S  +++   +W   +G    + E   T   
Sbjct: 138 TG-ALLNVLNFHRAPIVS-VKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195

Query: 317 DNGVLALGGLNDPDGKPV----------LICACNDNTVHLYEL 349
                        DG              +       + +Y++
Sbjct: 196 SINAENH----SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQI 234

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 41/212 (19%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
             KL GH   +S +     +  L S S DGT   W+  +                     
Sbjct: 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN--------------------- 278

Query: 225 MLFAGAQ----DGHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279
               G       GH++ +   +     ++ S SMD ++R+W L     +           
Sbjct: 279 ----GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334

Query: 280 SLLCW--D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL 335
           +      D Q      +D  + V+          + Y +   +G+L    L  P      
Sbjct: 335 A-GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN--RDGILNP--LPIPLYASYQ 389

Query: 336 ICACNDNTVHLYELPSFMERGRIFSKHEVRVI 367
               ND    L    +  +    +S  E  V+
Sbjct: 390 SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV 421

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 55/227 (24%)

Query: 144 GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNI 201
            +       +            + A        V+ +A     + + +G  +G    WN 
Sbjct: 78  TDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK 137

Query: 202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIR 258
             +    L+                       H  P+  +     G   + S  ++N   
Sbjct: 138 TGALLNVLNF----------------------HRAPIVSVKWNKDGT-HIISMDVENVTI 174

Query: 259 VWELDTLEPVMTLNDHTDAPMSLLCW----------------DQFLLSCSLDHTIKVW-F 301
           +W + +   +           S+                   D   +       I V+  
Sbjct: 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQI 234

Query: 302 ATGR--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
                 G L     H     +  L    +   K +L+ A +D T+ +
Sbjct: 235 TEKTPTGKLIG---HH--GPISVLE--FNDTNK-LLLSASDDGTLRI 273

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 33/229 (14%), Positives = 63/229 (27%), Gaps = 52/229 (22%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
            +K+       +     L+  +   G+ +G     +   + +                 E
Sbjct: 90  GSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR----------------E 133

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
           +        H   +T L     G   L S S D  +++W +       TL  H       
Sbjct: 134 ID-----QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD- 186

Query: 282 LCW--D-QFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKE---------DNGVLALGGL 326
           +      + +LS SLD TI++W   TG             +                   
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS 246

Query: 327 ND--------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI 367
                       GK  +I       + ++ + S  +  ++ SK      
Sbjct: 247 TSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 66/218 (30%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
                 + H   ++ +      + L S S+D     W+++                    
Sbjct: 130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD------------------- 170

Query: 223 NEMLFAGAQ----DGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                 G+      GH   VT +A+   GR  + S S+D TIR+WE  T   + T N   
Sbjct: 171 ------GSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKE 223

Query: 276 ---DAPMSLLCWD-----------------------QFLLSCSLDHTIKVW-FATGRGNL 308
              D   S+  +                        +++++  +   I V    +    +
Sbjct: 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283

Query: 309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
           +            +L  ++  +    +     +  +  
Sbjct: 284 QLPSKF--TCSCNSL-TVDGNNAN-YIYAGYENGMLAQ 317

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 74.6 bits (184), Expect = 7e-15
 Identities = 36/251 (14%), Positives = 69/251 (27%), Gaps = 71/251 (28%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIE-------------------SSA 205
              L GH   V+ IA+  R   + S S DGT   W                      S A
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233

Query: 206 EFSLDGPV------GEVYSMVVA----NEMLFAGAQD-------------------GHTR 236
            F             +  +  +      + + AG                        T 
Sbjct: 234 LFVGTDRQLHEISTSKKNN--LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291

Query: 237 PVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVM--TLNDHTDAPMSLLCW--DQFLL 289
               L V     + + +G  +  +  W+L + E  +   L +      ++  +      +
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFV 350

Query: 290 SCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND-------PDGKPV--LICACN 340
           S   D +IK+   +   +   A   +       +   +         D +    ++    
Sbjct: 351 SSGFDTSIKLDIISDPESERPAIEFE--TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408

Query: 341 DNTVHLYELPS 351
           +N   LY L +
Sbjct: 409 NNFCALYNLSN 419

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 20/154 (12%), Positives = 37/154 (24%), Gaps = 44/154 (28%)

Query: 168 AKLEGHEKAVSGIALPLRS-------DKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
             + G+ + V       +          L+    DG    +N        +         
Sbjct: 47  IVVLGNSRGVD----AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK------- 95

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                                        R R   G+ +  I+V + +          H 
Sbjct: 96  ---------------RADYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQAHV 139

Query: 276 DAPMSLLCW---DQFLLSCSLDHTIKVW-FATGR 305
                 L +    + L+S S D  +K+W    G 
Sbjct: 140 SEITK-LKFFPSGEALISSSQDMQLKIWSVKDGS 172

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 12/133 (9%), Positives = 33/133 (24%), Gaps = 21/133 (15%)

Query: 233 GHTRPVTCLAV--GRSRLCSGSMDNTIRVW--------ELDTLEPVMT-LNDHTDAPMSL 281
             T+ +T   +      +   + +N    +        E+   + V+   +   DA    
Sbjct: 3   HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKG- 61

Query: 282 LCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338
             +      L    LD    ++      +        +   V           +   I  
Sbjct: 62  NTFEKVGSHLYKARLDGHDFLFNTII-RDGSKMLKRADYTAVDTA----KLQMR-RFILG 115

Query: 339 CNDNTVHLYELPS 351
             +  + + +   
Sbjct: 116 TTEGDIKVLDSNF 128

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 30/147 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
              L GH   V+ +        + S S D T   W+ E+          G+    +    
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----------GDFERTL---- 146

Query: 225 MLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                   GHT  V  ++       L S S D TI++W+    E + T++ H     S +
Sbjct: 147 -------KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS-V 198

Query: 283 CW---DQFLLSCSLDHTIKVW-FATGR 305
                   ++S S D TIK+W   TG 
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGY 225

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 88.0 bits (219), Expect = 3e-19
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 24/192 (12%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVA- 222
           +    GH + V  +        + S S D T   W + +      L      V  +  A 
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286

Query: 223 NEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                + ++   +        G   L SGS D TI++W++ T   +MTL  H +     +
Sbjct: 287 ESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG-V 344

Query: 283 CW--D-QFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLND--PDGKPV 334
            +    +F+LSC+ D T++VW +   R    L A   H  ++ V +L    D        
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA---H--EHFVTSL----DFHKTAP-Y 394

Query: 335 LICACNDNTVHL 346
           ++    D TV +
Sbjct: 395 VVTGSVDQTVKV 406

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 30/147 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
              L+GH  +V  I+       L S S D T   W+ +                      
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI----------------R 186

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
            +      GH   V+ +++   G   + S S D TI++WE+ T   V T   H +    +
Sbjct: 187 TM-----HGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 282 -LCWD-QFLLSCSLDHTIKVW-FATGR 305
               D   + SCS D T++VW  AT  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKE 267

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 64/212 (30%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           +  + GH+  VS +++    D + S SRD T   W +++                     
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--------------------- 223

Query: 225 MLFAGAQ----DGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-- 276
               G       GH   V  +   +  + + S S D T+RVW + T E    L +H    
Sbjct: 224 ----GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279

Query: 277 ---------APMSLLCWD-----------QFLLSCSLDHTIKVW-FATGRGNLEAAYT-H 314
                    +  S+                FLLS S D TIK+W  +TG          H
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGH 337

Query: 315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
             DN V  +   +   GK  ++   +D T+ +
Sbjct: 338 --DNWVRGV-LFH-SGGK-FILSCADDKTLRV 364

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 25/100 (25%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           L  L GH+  V G+        + S + D T   W+ ++                +    
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN----------KRCMKTL---- 376

Query: 225 MLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWEL 262
                  + H   VT L   +    + +GS+D T++VWE 
Sbjct: 377 -------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 40/199 (20%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
                 H   ++ + + P+    + SG  DG    +++E+S+  S             A 
Sbjct: 36  RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY--------YTCKAV 87

Query: 224 EMLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279
             +     D H   V  +            S S D T++VW+ +TL+      +  +   
Sbjct: 88  CSIGRDHPDVHRYSVETVQWYPHDTG-MFTSSSFDKTLKVWDTNTLQTADVF-NFEETVY 145

Query: 280 SLLCW------DQFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLND-- 328
           S             +   +    +++    +G     L+    H+    +LA+       
Sbjct: 146 S-HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG---HR--QEILAV-----SW 194

Query: 329 -PDGKPVLICACNDNTVHL 346
            P    +L  A  D+ V L
Sbjct: 195 SPRYDYILATASADSRVKL 213

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 32/196 (16%), Positives = 55/196 (28%), Gaps = 38/196 (19%)

Query: 170 LEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML 226
            + H  +V  +   P  +    S S D T   W+  +     +      VYS        
Sbjct: 95  PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYS--HH---- 148

Query: 227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-- 284
            +                   +  G+    +++ +L +      L  H    ++ + W  
Sbjct: 149 MS--PVSTKH---------CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA-VSWSP 196

Query: 285 --DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLA---LGGLND--------PD 330
             D  L + S D  +K+W      G L     H               N          D
Sbjct: 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256

Query: 331 GKPVLICACNDNTVHL 346
           G   L+    DN + L
Sbjct: 257 GL-HLLTVGTDNRMRL 271

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 20/153 (13%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
              L+GH + +  ++  P     L + S D     W++  ++   +              
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                     H   V  L     G   L +   DN +R+W     E  +           
Sbjct: 239 SAN-----TAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292

Query: 281 L-------LCWDQFLLSCSLDHTIKVW-FATGR 305
                          +      TI V+   +G 
Sbjct: 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE 325

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 28/206 (13%), Positives = 48/206 (23%), Gaps = 30/206 (14%)

Query: 148 RGDEC-RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESS 204
           R   C   L      +   + +    H   V+G+        L +   D     WN  + 
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277

Query: 205 AE-FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD 263
                  G V                      +                  +TI V+ + 
Sbjct: 278 ENTLVNYGKVCNNSK--------------KGLKFTVSCGCSS-EFVFVPYGSTIAVYTVY 322

Query: 264 TLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV 320
           + E +  L  H         +    Q L S S D  I  W  +    +       E    
Sbjct: 323 SGEQITMLKGHYKTVDC-CVFQSNFQELYSGSRDCNILAWVPSLYEPVPD---DDETTTK 378

Query: 321 LALGGLNDPDGKPVLICACNDNTVHL 346
             L    +P  +     +  +     
Sbjct: 379 SQL----NPAFEDAWSSSDEEGGTSA 400

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 16/111 (14%)

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD----QFLLSCSLDHTIKVW-FATG 304
               ++T RV  L+  +       H     + L  +    +++LS   D  I ++     
Sbjct: 18  LRRAESTRRVLGLELNKDRDVERIHGGGINT-LDIEPVEGRYMLSGGSDGVIVLYDLENS 76

Query: 305 RGNLEAAYTHKEDNGVLALGGLNDP---------DGKPVLICACNDNTVHL 346
                         G                   D   +   +  D T+ +
Sbjct: 77  SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG-MFTSSSFDKTLKV 126

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 17/108 (15%), Positives = 22/108 (20%), Gaps = 31/108 (28%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
             +  L+GH K V          +L+SGSRD     W                       
Sbjct: 325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP-------------- 370

Query: 223 NEMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMD-NTIRVWELDTLE 266
                           T             S S +      W     E
Sbjct: 371 ----------DDDETTTKSQLNPAFE-DAWSSSDEEGGTSAWSHPQFE 407

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVV 221
             +  ++  E  V       R + +  GS D     +N  +  +                
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------ 93

Query: 222 ANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPV-MTLNDHTDA 277
                     + H   +  +AV       + SGS D T+++W  +    +  T   H   
Sbjct: 94  ----------EAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142

Query: 278 PMSLLCW---D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGK 332
            M  + +   D     S  LD T+KVW       N         + GV  +     PD  
Sbjct: 143 VMC-VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDK- 198

Query: 333 PVLICACNDNTVHL 346
           P +I A +D T+ +
Sbjct: 199 PYMITASDDLTIKI 212

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 45/212 (21%), Positives = 68/212 (32%), Gaps = 36/212 (16%)

Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
           L +          V GI        + +    G    WN E+           EV S+  
Sbjct: 3   LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------EVRSI-- 51

Query: 222 ANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278
                          PV            +  GS D  IRV+  +T E V+    H D  
Sbjct: 52  ----------QVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI 100

Query: 279 MSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT-HKEDNGVLALGGLNDPDGKPV 334
            S +       ++LS S D T+K+W       LE  +  H  ++ V+ +   N  D    
Sbjct: 101 RS-IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCV-AFNPKDPS-T 155

Query: 335 LICACNDNTVHLYELPSFMERGRIFSKHEVRV 366
               C D TV ++ L        + +  E  V
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 44/222 (19%), Positives = 70/222 (31%), Gaps = 47/222 (21%)

Query: 170 LEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML 226
            EGHE  V  +A  P       SG  D T   W++  S       P   +          
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST------PNFTLT--------- 180

Query: 227 FAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                 G  R V  +       +  + + S D TI++W+  T   V TL  H        
Sbjct: 181 -----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF-A 234

Query: 283 CW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338
            +      ++S S D T+K+W  +T +  +E             +     P G+   I +
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYK--VEKTLNV-GLERSWCIATH--PTGRKNYIAS 289

Query: 339 CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDG 380
             DN   +  L             +         KL ++G  
Sbjct: 290 GFDNGFTVLSL----GNDEPTLSLD------PVGKLVWSGGK 321

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 47/204 (23%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYSMVVAN 223
           +A LEGH   VS          + SGS DGT   WN  +   E +L              
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-------------- 266

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                   +       C+A    GR    +   DN   V  L   EP ++L+       S
Sbjct: 267 --------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318

Query: 281 LLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND--------PDGK 332
                    S      I+      +    +  T +       LG ++         P+G+
Sbjct: 319 GG--KNAAASDIFTAVIRGNEEVEQDEPLSLQTKE-------LGSVDVFPQSLAHSPNGR 369

Query: 333 PVLICACNDNTVHLYELPSFMERG 356
              +    D    +Y   ++  + 
Sbjct: 370 --FVTVVGDGEYVIYTALAWRNKA 391

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 86.0 bits (214), Expect = 4e-19
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
              + GH+  +S +A    S+ L S S D T   W++ S            + ++     
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LKTL----- 103

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
                   GH+  V C          + SGS D ++R+W++ T + + TL  H+D   ++
Sbjct: 104 -------KGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155

Query: 282 -LCWD-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338
               D   ++S S D   ++W  A+G+          ++  V  +     P+GK  ++ A
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKF--SPNGK-YILAA 210

Query: 339 CNDNTVHLYELPS 351
             DNT+ L++   
Sbjct: 211 TLDNTLKLWDYSK 223

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 32/148 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
              L GH KAVS +      + L S S D     W           G   +  S      
Sbjct: 16  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------GKFEKTIS------ 62

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
                   GH   ++ +A        L S S D T+++W++ + + + TL  H++     
Sbjct: 63  --------GHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC- 112

Query: 282 LCWD---QFLLSCSLDHTIKVW-FATGR 305
             ++     ++S S D ++++W   TG+
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGK 140

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 42/170 (24%), Positives = 57/170 (33%), Gaps = 39/170 (22%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS--LDGPVGEVYSMVVA 222
           L  L  H   VS +        + S S DG    W+  S       +D     V    V 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VK 199

Query: 223 ----NEMLFAGAQD------------------GHTRPVTCLAVGRS-----RLCSGSMDN 255
                + + A   D                  GH     C+    S      + SGS DN
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

Query: 256 TIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSL--DHTIKVW 300
            + +W L T E V  L  HTD  +S       +  + S +L  D TIK+W
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVIS-TACHPTENIIASAALENDKTIKLW 308

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 32/107 (29%)

Query: 167 LAKLEGHEKAVSGIALPLRSD---KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
           L    GH+     I           + SGS D     WN+++         + +      
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-------KEIVQKL---- 275

Query: 222 ANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSM--DNTIRVWELD 263
                      GHT  V   A        + S ++  D TI++W+ D
Sbjct: 276 ----------QGHTDVVISTACHPTEN-IIASAALENDKTIKLWKSD 311

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 86.0 bits (214), Expect = 7e-19
 Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 43/219 (19%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVA- 222
              L GH   +  +     S  L S S+DG    W+  ++ +  ++      V +   A 
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT--CAY 105

Query: 223 ---NEMLFAGAQD----------------------GHTRPVTCLAVGR-SRLCSGSMDNT 256
                 +  G  D                      GHT  ++C      +++ + S D T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 257 IRVWELDTLEPVMTLNDHTDAPMSL-LCWD-QFLLSCSLDHTIKVW-FATGRGNLEAAYT 313
             +W+++T +   T   HT   MSL L  D +  +S + D + K+W    G    +    
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTG 224

Query: 314 HKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           H+ D N +        P+G        +D T  L++L +
Sbjct: 225 HESDINAI-CF----FPNGN-AFATGSDDATCRLFDLRA 257

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 53/223 (23%)

Query: 161 GEGLTMLAK-LEGHEKAVSGIALPLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGE 215
            EG   +++ L GH   +S        D  ++ + S D T   W+IE+            
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIET------------ 173

Query: 216 VYSMVVANEMLFAGAQ----DGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPV 268
                        G Q     GHT  V  L++    R    SG+ D + ++W++      
Sbjct: 174 -------------GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCR 219

Query: 269 MTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVW-FATGRGNLEAAYT-HKEDNGVLAL 323
            T   H     + +C+        + S D T +++     +      Y+      G+ ++
Sbjct: 220 QTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSV 276

Query: 324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV 366
              +   G+ +L+   +D   ++++     +R  + + H+ RV
Sbjct: 277 -SFS-KSGR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRV 315

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 29/142 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
                GHE  ++ I      +   +GS D T   +++ +  E                  
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----------------L 261

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
           M ++   D     +T ++    GR  L +G  D    VW+    +    L  H +    L
Sbjct: 262 MTYSH--DNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

Query: 282 LCW--D-QFLLSCSLDHTIKVW 300
                D   + + S D  +K+W
Sbjct: 319 -GVTDDGMAVATGSWDSFLKIW 339

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 35/150 (23%)

Query: 233 GHTRPVTCLAVGRS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFL 288
              R         +    + ++D   R+     +    TL  H     + + W    + L
Sbjct: 16  NQIRDARKACADATLSQITNNIDPVGRIQ----MRTRRTLRGHLAKIYA-MHWGTDSRLL 70

Query: 289 LSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND--------PDGKPVLICAC 339
           LS S D  + +W   T              N V A+   +         P G   + C  
Sbjct: 71  LSASQDGKLIIWDSYTT-------------NKVHAIPLRSSWVMTCAYAPSGN-YVACGG 116

Query: 340 NDNTVHLYELPS---FMERGRIFSKHEVRV 366
            DN   +Y L +    +   R  + H   +
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYL 146

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 86.7 bits (215), Expect = 8e-19
 Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 45/214 (21%)

Query: 147 VRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIES 203
            +G +  FLH+    +   +L K    ++  + +A  P     +  GS+ G    WN   
Sbjct: 95  QQGLQQSFLHTL---DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI 151

Query: 204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRV 259
                 D P                    G    +T L         +  + SM+ T R+
Sbjct: 152 K-----DKPTFIKGI--------------GAGGSITGLKFNPLNTN-QFYASSMEGTTRL 191

Query: 260 WELDT--LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGR--GNLEAAY 312
            +     L    + +       S L      + +++      + +    G+   NL    
Sbjct: 192 QDFKGNILRVFASSDTINIWFCS-LDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM-- 248

Query: 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
            HK    V  +  LN P     L  A  D TV +
Sbjct: 249 -HK--KKVTHV-ALN-PCCDWFLATASVDQTVKI 277

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 51/207 (24%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           L  L  H+K V+ +AL P     L + S D T   W++                +  + +
Sbjct: 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ----------VRGKASFLYS 292

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                     H  PV        G  RL +    + IRV+     +  + L  H      
Sbjct: 293 L--------PHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343

Query: 281 LLCW-------------------DQFLLSCSLD-HTIKVW-FATGRGNLEAAYTHKEDNG 319
            L                       F      +  TI V+   +G+   +        +G
Sbjct: 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE--SSG 401

Query: 320 VLALGGLNDPDGKPVLICACNDNTVHL 346
           + +L   N P G    + +     + +
Sbjct: 402 ISSLNEFN-PMGD--TLASAMGYHILI 425

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 17/156 (10%)

Query: 161 GEGLTMLAKLEGHEKAVSGIAL-PLRSD--KLFSGSRDGTA--WNIESSAEFS-LDGPVG 214
             G         H   V+     P   D  +L +  +      ++         L     
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSP---DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339

Query: 215 EVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND- 273
             +  +   +  +      +   V        + C+     TI V++ ++ + +  L D 
Sbjct: 340 RHFQHLTPIKAAWHP--RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397

Query: 274 HTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGR 305
            +    SL  +      L S    + I +W     R
Sbjct: 398 ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 87.4 bits (217), Expect = 9e-19
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 37/193 (19%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
             +  GH K V  +A  L + ++ S SRD T   WN     ++++               
Sbjct: 465 TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG----------- 513

Query: 225 MLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                  +GH   V+C+       +  + S S D T++VW L   +   TL  HT    +
Sbjct: 514 -------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVST 566

Query: 281 LLCW--D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336
            +    D     S   D  + +W  A G    +  Y+ + ++ + AL     P+     +
Sbjct: 567 -VAVSPDGSLCASGGKDGVVLLWDLAEG----KKLYSLEANSVIHALC--FSPNRY--WL 617

Query: 337 CACNDNTVHLYEL 349
           CA  ++ + +++L
Sbjct: 618 CAATEHGIKIWDL 630

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 39/179 (21%), Positives = 61/179 (34%), Gaps = 28/179 (15%)

Query: 136 NVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSR 194
               +   G     D            GL +   +  H   V+ IA     +D + S SR
Sbjct: 345 TAVINAASGRQT-VDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASR 403

Query: 195 DGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLC 249
           D +   W +        D   G           L      GH+  V  + +   G+    
Sbjct: 404 DKSIILWKLTKD-----DKAYGVAQ------RRL-----TGHSHFVEDVVLSSDGQ-FAL 446

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGR 305
           SGS D  +R+W+L           HT   +S + +    + ++S S D TIK+W   G 
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIVSASRDRTIKLWNTLGE 504

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 48/159 (30%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
            + L GH   VS +A+        SG +DG    W++    +         +YS+     
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK---------LYSL----- 599

Query: 225 MLFAGAQDGHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL- 281
                  + ++  +  L     R  LC+ + ++ I++W+L++   V  L     A     
Sbjct: 600 -------EANS-VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA 650

Query: 282 -----------------LCW--D-QFLLSCSLDHTIKVW 300
                            L W  D   L S   D  I+VW
Sbjct: 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 38/174 (21%)

Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVA----- 222
           +    +K +  +AL    ++L    R      N +          +   +  V       
Sbjct: 291 EAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA 350

Query: 223 -------------------NEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVW 260
                                ++  G    HT  VT +A        + S S D +I +W
Sbjct: 351 ASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILW 410

Query: 261 ELDTLEPVM-----TLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVW-FATGR 305
           +L   +         L  H+      +    D QF LS S D  +++W  A G 
Sbjct: 411 KLTKDDKAYGVAQRRLTGHSHFVED-VVLSSDGQFALSGSWDGELRLWDLAAGV 463

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 38/198 (19%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           ++ L+ H + V  +        L S S D T   W          D     V +      
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD-----DWECVAVLN------ 194

Query: 225 MLFAGAQDGHTRPVTCLAV---GR-SRLCSGSMDNTIRVWELDTLEPVMT---------L 271
                   GH   V            RLCSGS D+T+RVW+    +              
Sbjct: 195 --------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246

Query: 272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND 328
           + H     + + W  +  + S   D  + V+    G   + A          + +    +
Sbjct: 247 DVHKRQVYN-VAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305

Query: 329 PDGKPVLICACNDNTVHL 346
            +GK +L    +D  V+ 
Sbjct: 306 LNGKTILATGGDDGIVNF 323

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 83.4 bits (207), Expect = 4e-18
 Identities = 30/206 (14%), Positives = 67/206 (32%), Gaps = 49/206 (23%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           +  L+ +++ +            L +GS D      +++       D             
Sbjct: 7   IKSLKLYKEKIWSFDFSQ---GILATGSTDRKIKLVSVKY------DDFTLIDVL----- 52

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT-------LEPVMTLND 273
                  +  H + +  +A        L +GS D+T+ +W  +        ++ +  +  
Sbjct: 53  ------DETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105

Query: 274 HTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYT---HKED-NGVLALGG 325
           H +     + W     +L +CS D ++ +W         E       H +D   V     
Sbjct: 106 HENEVKG-VAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-IW-- 161

Query: 326 LNDPDGKPVLICACNDNTVHLYELPS 351
              P    +L  +  D+TV +++   
Sbjct: 162 --HPSEA-LLASSSYDDTVRIWKDYD 184

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 47/203 (23%), Positives = 70/203 (34%), Gaps = 44/203 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           LA +EGHE  V G+A       L + SRD +   W  + S E        E  S++    
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE------EYECISVL---- 149

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHTDAPM 279
                    H++ V  +         L S S D+T+R+W+      E V  LN H     
Sbjct: 150 -------QEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW 201

Query: 280 SLLCWD-----QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND------ 328
           S   +D       L S S D T++VW   G    +      E    +             
Sbjct: 202 S-SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE---AILPDVHKRQVYNVA 257

Query: 329 --PDGKPVLICACNDNTVHLYEL 349
              +G   +     D  + +YE 
Sbjct: 258 WGFNGL--IASVGADGVLAVYEE 278

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 76.5 bits (189), Expect = 9e-16
 Identities = 30/152 (19%), Positives = 40/152 (26%), Gaps = 26/152 (17%)

Query: 167 LAKLEGHEKAVSGIAL--PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
           +A L GHE  V            +L SGS D T   W      E   D            
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE--DDQQEWV------- 240

Query: 223 NEMLFAGAQDGHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDT----LEPVMTLNDHTDA 277
                A   D H R V  +A G    + S   D  + V+E       +     L      
Sbjct: 241 ---CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE 297

Query: 278 PMSLLCW----DQFLLSCSLDHTIKVW-FATG 304
              +          L +   D  +  W     
Sbjct: 298 INVVKWLELNGKTILATGGDDGIVNFWSLEKA 329

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 26/110 (23%)

Query: 162 EGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
           E +      + H++ V  +A     +  + S   DG    +              GE   
Sbjct: 238 EWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVD----------GEWKV 285

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRVWELDT 264
                      A       +  +      G++ L +G  D  +  W L+ 
Sbjct: 286 FAKR-------ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 8/199 (4%), Positives = 24/199 (12%), Gaps = 37/199 (18%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
            A    H        L     +                  +       +    +      
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDT------ 154

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLND-----HTD 276
                           + +    + +   G +   +    L     ++  +         
Sbjct: 155 --------DSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLF 206

Query: 277 APMSLLCWD----QFLLSCSLDHTIKVWFATGRGNLEAAYT-HKED-NGVLALGGLNDPD 330
                        +   +        V                 +      A      P 
Sbjct: 207 FYRD-PEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQP-AA----IPA 260

Query: 331 GKPVLICACNDNTVHLYEL 349
                              
Sbjct: 261 QA-GADWTAAPAPAAGGWD 278

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 82.2 bits (204), Expect = 2e-17
 Identities = 12/194 (6%), Positives = 25/194 (12%), Gaps = 41/194 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSD-KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
             ++        G               +  T   + I         G   E        
Sbjct: 18  DIQMMLAADVHLGTKNC--DFQMERYVYKRRTDGIYIINL-------GKTWEKLQ----- 63

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                       R +  +           +        +              HT    +
Sbjct: 64  ---------LAARVIVAIENPQDII-VQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113

Query: 281 LLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKE----DNGVLALGGLNDPDGK 332
                          L                                + +G     + K
Sbjct: 114 -NQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP--ANNK 170

Query: 333 PVLICACNDNTVHL 346
                 C    +  
Sbjct: 171 GKQSIGCLFWLLAR 184

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 80.3 bits (199), Expect = 7e-17
 Identities = 8/217 (3%), Positives = 28/217 (12%), Gaps = 40/217 (18%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVAN 223
             KL+   + +  I  P       +      A     + +             ++     
Sbjct: 59  WEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT--NQ- 115

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVM-------TLNDHTD 276
                                        + +     +      +           D   
Sbjct: 116 ---L--QTSFS------------EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158

Query: 277 APMSLLCW----DQFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLNDP 329
             +  +              L   +                     +             
Sbjct: 159 RYVD-IGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP-EEAKE 216

Query: 330 DGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV 366
             +         +   + E  +               
Sbjct: 217 QEE-EEAALVAPDYGAVAEYAAPAADTWGGEWGTDAA 252

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 5/131 (3%), Positives = 18/131 (13%), Gaps = 26/131 (19%)

Query: 233 GHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--D-QFL 288
                                   T  ++ ++  +    L       ++ +    D    
Sbjct: 23  LAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA-IENPQDIIVQ 81

Query: 289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND--------PDGKPVLICACN 340
            +        +           A            G                        
Sbjct: 82  SARPYGQRAVLK---------FAQYTGA---HAIAGRHTPGTFTNQLQTSFS-EPRLLIL 128

Query: 341 DNTVHLYELPS 351
            +    ++   
Sbjct: 129 TDPRTDHQPIK 139

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 85.3 bits (212), Expect = 1e-18
 Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 58/241 (24%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
             KL GHE+ ++ +      D LFS S+D +A  W   +                     
Sbjct: 25  AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--------------------- 63

Query: 225 MLFAGAQ----DGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277
               G +    DGHT  +  + V    +    +GS D +I++W++   + V T       
Sbjct: 64  ----GERLGTLDGHTGTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQCVATWKSPVPV 118

Query: 278 PMSLLCW---DQFLLSCSLDH-----TIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND 328
               + +     + L+   +      +I ++         E     +E    +      D
Sbjct: 119 -KR-VEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176

Query: 329 --------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGPD-KLFFT 377
                     GK  +I    D  +  Y++ +  E       HE  +  ++  PD   F T
Sbjct: 177 AATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235

Query: 378 G 378
            
Sbjct: 236 S 236

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 71.1 bits (175), Expect = 8e-14
 Identities = 28/213 (13%), Positives = 68/213 (31%), Gaps = 58/213 (27%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVAN 223
           L  L+GH   +  I +   +    +GS D +   W++ +     +   P   V    V  
Sbjct: 67  LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP-VPVKR--VE- 122

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD-----NTIRVWELDTLEPVMTLNDHTDAP 278
              F  +  G            +   +   +      +I ++E++       L   ++ P
Sbjct: 123 ---F--SPCG------------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165

Query: 279 MSLL------------CW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLA 322
           +  +             W    +++++   D  I  +  +     +++   H+       
Sbjct: 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE------- 218

Query: 323 LGGLND----PDGKPVLICACNDNTVHLYELPS 351
              ++D    PD     I +  D    L ++ +
Sbjct: 219 -KSISDMQFSPDLT-YFITSSRDTNSFLVDVST 249

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 65.3 bits (160), Expect = 6e-12
 Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 41/162 (25%)

Query: 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES--------------SAE 206
               +  ++ HEK++S +          + SRD  +   ++ +              +A 
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV 266

Query: 207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE 266
            +               E +  G      + VT  +       +       R +     E
Sbjct: 267 ITPLK------------EFIILGGGQ-EAKDVTTTS-------ANEGKFEARFYHKIFEE 306

Query: 267 PVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVW-FATG 304
            +  +  H     ++           S   D  I++  F   
Sbjct: 307 EIGRVQGHFGPLNTV-AISPQGTSYASGGEDGFIRLHHFEKS 347

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 10/141 (7%), Positives = 36/141 (25%), Gaps = 48/141 (34%)

Query: 189 LFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-- 244
           + +G +DG    +++ ++ E+                + +     D H + ++ +     
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYV---------------DSI-----DLHEKSISDMQFSPD 229

Query: 245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT-------------------DAPMSLLCWD 285
            +   + S D    + ++ TL+ +                               +    
Sbjct: 230 LTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289

Query: 286 QFLLSCSLDHTIKVW-FATGR 305
               +       + +      
Sbjct: 290 ----ANEGKFEARFYHKIFEE 306

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 20/138 (14%)

Query: 243 VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKV 299
           +G S        +   ++   +    + L  H       + +      L SCS D +  V
Sbjct: 1   MG-SSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQ-VKYNKEGDLLFSCSKDSSASV 58

Query: 300 WFA-TGR--GNLEAAYTHKEDNGV--LALGGLNDPDGKPVLICACNDNTVHLYELPSFME 354
           W++  G   G L+    H     +  + +    D   K   +    D ++ L+++ +   
Sbjct: 59  WYSLNGERLGTLDG---HT--GTIWSIDV----DCFTK-YCVTGSADYSIKLWDVSNGQC 108

Query: 355 RGRIFSKHEVRVIEIGPD 372
                S   V+ +E  P 
Sbjct: 109 VATWKSPVPVKRVEFSPC 126

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 31/218 (14%), Positives = 58/218 (26%), Gaps = 53/218 (24%)

Query: 161 GEGLTMLAKLEGHEKAVSGIA----------LPLRSDKLFSGSRDGTA--WNIESSAEFS 208
           GE     A+ E H   VS +           +   +    S   DG    WN      ++
Sbjct: 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208

Query: 209 LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTL 265
                                    H   V  L++   G+  + +G  D  + +W++  L
Sbjct: 209 FKA----------------------HESNVNHLSISPNGK-YIATGGKDKKLLIWDILNL 245

Query: 266 EPVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVL 321
                  D        + +    Q++   + D  +K++   T           +      
Sbjct: 246 TYPQREFDAGSTINQ-IAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAE 303

Query: 322 ALGGLND--------PDGKPVLICACNDNTVHLYELPS 351
              G N           GK  L     D  +  +   +
Sbjct: 304 GQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFET 340

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 41/198 (20%), Positives = 62/198 (31%), Gaps = 37/198 (18%)

Query: 170 LEGHEKAVSGIALPLRSD------KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVV 221
           LEGH   V+ I              L SGSRD T   W +    +    G   +  +   
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--- 73

Query: 222 ANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP 278
                      GH   V+ LA+         S S D T+R+W+L T         H    
Sbjct: 74  -----------GHNHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEV 121

Query: 279 MSLLCW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL-------GGLND 328
            S + +  D + +LS   +  IK+W   G     +A      + V  +            
Sbjct: 122 YS-VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180

Query: 329 PDGKPVLICACNDNTVHL 346
               P       D  + +
Sbjct: 181 QPFAPYFASVGWDGRLKV 198

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 26/203 (12%), Positives = 59/203 (29%), Gaps = 46/203 (22%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
             +  GH+  V  +A    + ++ S   +     WNI    +FS                
Sbjct: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS--------------- 155

Query: 225 MLFAGAQDGHTRPVTCLA------------VGRSRLCSGSMDNTIRVWELDTLEPVMTLN 272
                 ++ H+  V+C+                    S   D  ++VW  +  +   T  
Sbjct: 156 ----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFK 210

Query: 273 DHTDAPMSLLCW--D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND 328
            H       L    + +++ +   D  + +W                  + +  +    +
Sbjct: 211 AHESNVNH-LSISPNGKYIATGGKDKKLLIWDILNLT---YPQREFDAGSTINQIA--FN 264

Query: 329 PDGKPVLICACNDNTVHLYELPS 351
           P  +   +    D  V ++ L +
Sbjct: 265 PKLQ--WVAVGTDQGVKIFNLMT 285

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 28/115 (24%)

Query: 252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD--------QFLLSCSLDHTIKVW-FA 302
           + ++++ +  +        L  H+D   S++             L+S S D T+ +W   
Sbjct: 2   ADNSSLDIQVVKR----GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY 57

Query: 303 TGRGNLEAAYTHKEDNGVLALGGLND--------PDGKPVLICACNDNTVHLYEL 349
               N      HK      AL G N          +     I +  D T+ L++L
Sbjct: 58  EEEQNGYFGIPHK------ALTGHNHFVSDLALSQENC-FAISSSWDKTLRLWDL 105

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           +  LEGH K V  +A  P   + L S   D     W++ + A                  
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----------------- 166

Query: 224 EMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS- 280
             +     D H   +  +   R  + +C+   D  +RV E      V   +   +     
Sbjct: 167 --VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224

Query: 281 ---LLCWDQFLLSC---SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV 334
               +   + L +      +  + +W         +       +GVL      DPD   V
Sbjct: 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP--FFDPDTNIV 282

Query: 335 LICACNDNTVHLYEL 349
            +C   D+++  +E+
Sbjct: 283 YLCGKGDSSIRYFEI 297

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 47/201 (23%), Positives = 72/201 (35%), Gaps = 32/201 (15%)

Query: 161 GEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVY 217
           G     +  + GH   V  IA  P   + + SGS D T   W I            G V 
Sbjct: 68  GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG---------GLVL 118

Query: 218 SMVVANEMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTLND- 273
            +      L     +GHT+ V  +A     ++ L S   DN I VW++ T   V+TL   
Sbjct: 119 PLREPVITL-----EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173

Query: 274 -HTDAPMSLLCWD---QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND 328
            H D   S + W      + +   D  ++V     G    E    H    G   +  +  
Sbjct: 174 VHPDTIYS-VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH---EGTRPVHAVFV 229

Query: 329 PDGKPVLICA--CNDNTVHLY 347
            +GK +       ++  V L+
Sbjct: 230 SEGKILTTGFSRMSERQVALW 250

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/168 (9%), Positives = 40/168 (23%), Gaps = 36/168 (21%)

Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS-LDGPVGEVYSMVVA--- 222
             + H   +  +        + +  RD              +  D P      +      
Sbjct: 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230

Query: 223 -NEMLFAGAQD-----------------------GHTRPVTCLAV---GRSRLCSGSMDN 255
             ++L  G                            +  V               G  D+
Sbjct: 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290

Query: 256 TIRVWELDTLEPVM-TLNDHTDAPMSL-LCWD-QFLLSCSLDHTIKVW 300
           +IR +E+ +  P +  L+  +       + +  +  L  +     + +
Sbjct: 291 SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFY 338

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 83.0 bits (206), Expect = 8e-18
 Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 46/207 (22%)

Query: 155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDG 211
           L              +  H   +S  +      ++ + S DGT   W++ES     S   
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-- 192

Query: 212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV-----GRSRLCSGSMDNTIRVWELDTLE 266
                                GH   V CL +     G     SG  D    VW++ + +
Sbjct: 193 --------------------HGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQ 231

Query: 267 PVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYT-HKEDNGVL 321
            V     H     S + +        S S D T +++     R    A Y+      G  
Sbjct: 232 CVQAFETHESDVNS-VRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGAS 288

Query: 322 ALGGLND--PDGKPVLICACNDNTVHL 346
           ++    D    G+ +L    ND T+++
Sbjct: 289 SV----DFSLSGR-LLFAGYNDYTINV 310

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 80.7 bits (200), Expect = 5e-17
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 46/221 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSM---- 219
              L+GH   V  +       ++ S S+DG    W+  ++ +  ++  P   V +     
Sbjct: 57  RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116

Query: 220 ------------------VVANEMLFAGAQ----DGHTRPVTCLAV---GRSRLCSGSMD 254
                             +  ++     A+      HT  ++  +       ++ + S D
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGD 175

Query: 255 NTIRVWELDTLEPVMTLNDHTDAPMSL----LCWDQFLLSCSLDHTIKVW-FATGRGNLE 309
            T  +W++++ + + + + H    + L           +S   D    VW   +G+  ++
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQ 234

Query: 310 AAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
           A  TH+ D N V        P G        +D T  LY+L
Sbjct: 235 AFETHESDVNSV-RY----YPSGD-AFASGSDDATCRLYDL 269

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 29/142 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           +   E HE  V+ +      D   SGS D T   +++ +  E                  
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-----------------V 275

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
            +++   +      + +     GR  L +G  D TI VW++     V  L  H +   + 
Sbjct: 276 AIYSK--ESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVST- 331

Query: 282 LCW--D-QFLLSCSLDHTIKVW 300
           L    D     S S DHT++VW
Sbjct: 332 LRVSPDGTAFCSGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 28/191 (14%)

Query: 170 LEGHEKAVSGIALPLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEM 225
            +G  +  +  +L  +S+   L     +  A   ++E          +G+          
Sbjct: 4   TDGLHENETLASL--KSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRR--T 59

Query: 226 LFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
           L      GH   V C+      R R+ S S D  + VW+  T      +       M+  
Sbjct: 60  L-----KGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA-C 112

Query: 283 CW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKE----DNGVLALGGLNDPDGKPVL 335
            +      +    LD+   V+  T   N   A   K      N + A            +
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDM-QI 169

Query: 336 ICACNDNTVHL 346
           + A  D T  L
Sbjct: 170 LTASGDGTCAL 180

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 26/214 (12%), Positives = 57/214 (26%), Gaps = 43/214 (20%)

Query: 149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSA 205
             +  F+ S    +   +       ++ V+ +   P     +  GS+ G    W+ +   
Sbjct: 51  CLQEPFIRSL---KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ- 106

Query: 206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWEL 262
               +                      G    +T +       ++L   S+     + + 
Sbjct: 107 ----NKTSFIQG--------------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF 148

Query: 263 DT--LEPVMTLNDHTDAPMSLLCWD-----QFLLSCSLDHTIKVWFATGRGNLEAAYTHK 315
               ++     +          C D     Q L +      + +    G    E      
Sbjct: 149 SGSVIQVFAKTDSWDY---WYCCVDVSVSRQMLATGDSTGRLLLLGLDGH---EIFKEKL 202

Query: 316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
               V      N P    ++  +  D TV L++L
Sbjct: 203 HKAKVTHAE-FN-PRCDWLMATSSVDATVKLWDL 234

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 35/209 (16%)

Query: 161 GEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVY 217
            +  T   +  G   A++G+      +++LF  S  G     +            +    
Sbjct: 105 VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-------SVIQVFA 157

Query: 218 SMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDH 274
                         D       C+ V    +  L +G     + +  LD    +     H
Sbjct: 158 KT------------DSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG-HEIFKEKLH 203

Query: 275 TDAPMSLLCW----DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDP 329
                    +    D  + + S+D T+K+W     +           +  V A    N  
Sbjct: 204 KAKVTHA-EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY-FNPT 261

Query: 330 DGKPVLICACNDNTVHLYELPSFMERGRI 358
           D    L+     N + +Y    + +  +I
Sbjct: 262 DST-KLLTTDQRNEIRVYSSYDWSKPDQI 289

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 45/203 (22%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           + K + H+  V+     P     + + S D T   W++ +               +   N
Sbjct: 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN---------------IKDKN 241

Query: 224 EMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
             +   A+  H +PV          ++L +    N IRV+          +  H      
Sbjct: 242 SYI---AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298

Query: 281 LL-----CWD------------QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL 323
            L      W                L  +   TI ++ A   G L          G+++L
Sbjct: 299 HLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANS-GGLVHQLRDPNAAGIISL 357

Query: 324 GGLNDPDGKPVLICACNDNTVHL 346
              + P G   ++ +     + +
Sbjct: 358 NKFS-PTGD--VLASGMGFNILI 377

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 30/207 (14%), Positives = 55/207 (26%), Gaps = 38/207 (18%)

Query: 156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA----WNIESSAEFSLDG 211
           + +F G G T   K  G    +  I        + +  R         +++S        
Sbjct: 11  NLYFQGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKS-------Y 63

Query: 212 PVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT--LE 266
            +    S                 R VT L       + +  GS    I +W+ D     
Sbjct: 64  KLHRTAS--------------PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT 109

Query: 267 PVMTLNDHTDAPMSLLCWD----QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA 322
             +      DA   +  ++      L   S+     +   +G      A T   D     
Sbjct: 110 SFIQGMGPGDAITGM-KFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCC 168

Query: 323 LGGLNDPDGKPVLICACNDNTVHLYEL 349
           +        + +L    +   + L  L
Sbjct: 169 VD--VSVSRQ-MLATGDSTGRLLLLGL 192

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 20/151 (13%)

Query: 161 GEGLTMLAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEV 216
            +          HEK V+     P  S KL +  +      ++    ++   +       
Sbjct: 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296

Query: 217 YSMVVANEMLFAGAQDGHTRPV-TCLAVGRS--RLCSGSMDNTIRVWELDTLEPVMTLND 273
           +  +                P+   +  GR        +   TI +++ ++   V  L D
Sbjct: 297 FQHL--------TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRD 348

Query: 274 H-TDAPMSLLCW---DQFLLSCSLDHTIKVW 300
                 +SL  +      L S      I +W
Sbjct: 349 PNAAGIISLNKFSPTGDVLASGM-GFNILIW 378

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 33/228 (14%), Positives = 57/228 (25%), Gaps = 46/228 (20%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
           G G         H+K V+ +    +S+++ + S+D  A  +       +           
Sbjct: 42  GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK---------- 91

Query: 219 MVVANEMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDT----LEPVMTL 271
                            R  T +        +   GS    I V   +            
Sbjct: 92  --------QTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLK 142

Query: 272 NDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAY-----THKEDNGVLAL 323
                  +S L W      L +   D    V  A  R            +    N V A 
Sbjct: 143 RPLRSTILS-LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE 201

Query: 324 GGLND--------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE 363
                        P G   L  A +D++V +    +  +  R     +
Sbjct: 202 YPSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVK 248

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 26/130 (20%)

Query: 233 GHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHTDAPMSLLCWD--- 285
              +P    A    R+   + +  N + ++E D    +   T +DH       + W    
Sbjct: 9   ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTC-VDWAPKS 67

Query: 286 QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND--------PDGKPVLIC 337
             +++CS D    V+     G  +           L L  LN         P+       
Sbjct: 68  NRIVTCSQDRNAYVYEKRPDGTWK---------QTLVLLRLNRAATFVRWSPNED-KFAV 117

Query: 338 ACNDNTVHLY 347
                 + + 
Sbjct: 118 GSGARVISVC 127

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 22/208 (10%), Positives = 49/208 (23%), Gaps = 48/208 (23%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
              L    +A + +      DK   GS          E   ++ +   +           
Sbjct: 93  TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR--------- 143

Query: 225 MLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDH---TDAP 278
                        +  L         L +G  D    V      +           +  P
Sbjct: 144 --------PLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP 194

Query: 279 MSLLCWD----------------QFLLSCSLDHTIKVWFATGRGNL-EAAYTHK-EDNGV 320
            + +C +                  L     D ++ + + +       A  T K     +
Sbjct: 195 FNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL 254

Query: 321 LALGGLNDPDGKPVLICACNDNTVHLYE 348
            +L      +    ++ A  + +  L +
Sbjct: 255 RSLLWA--NESA--IVAAGYNYSPILLQ 278

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 80.7 bits (200), Expect = 7e-17
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVAN 223
           L K   H   V  +      + L +G  + T   + +   +    L              
Sbjct: 57  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD----P 111

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
           E L   +       +  +     G+  L +G+ D  IR+W+++  + VM L  H     S
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170

Query: 281 LLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336
            L +      L+S S D T+++W   TG    + + T   ++GV  +  ++  DGK  + 
Sbjct: 171 -LDYFPSGDKLVSGSGDRTVRIWDLRTG----QCSLTLSIEDGVTTV-AVSPGDGK-YIA 223

Query: 337 CACNDNTVHL 346
               D  V +
Sbjct: 224 AGSLDRAVRV 233

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227
             GH+ +V  +        + SGS D +   WN++++   S           V       
Sbjct: 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY----- 306

Query: 228 AGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA------- 277
                GH   V  +A        + SGS D  +  W+  +  P++ L  H ++       
Sbjct: 307 ----IGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361

Query: 278 PMSLLCWD-QFLLSCSLDHTIKVW-FATGR 305
             S L  +     + S D   ++W +    
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIA 391

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 49/204 (24%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           +  L+GHE+ +  +      DKL SGS D T   W++ +                     
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--------------- 202

Query: 225 MLFAGAQDGHTRPVTCLAV----GRSRLCSGSMDNTIRVWELDTLEPVMTLND------- 273
                        VT +AV    G+  + +GS+D  +RVW+ +T   V  L+        
Sbjct: 203 ------LSIEDG-VTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254

Query: 274 HTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND-- 328
           H D+  S + +    Q ++S SLD ++K+W      N   + T       +   G  D  
Sbjct: 255 HKDSVYS-VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313

Query: 329 ------PDGKPVLICACNDNTVHL 346
                  + +  ++    D  V  
Sbjct: 314 LSVATTQNDE-YILSGSKDRGVLF 336

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 42/169 (24%)

Query: 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMV 220
            L    +   H K +    L L S  +    +  T   + + + A         E++   
Sbjct: 4   YLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREID--VELHKS- 60

Query: 221 VANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277
                        HT  V C+     G   L +G  + T +V+ +     V  L+D + A
Sbjct: 61  -----------LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA 107

Query: 278 PMSLLCWD--------------------QFLLSCSLDHTIKVW-FATGR 305
                  +                    +FL + + D  I++W     +
Sbjct: 108 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 31/141 (21%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWEL-------DTLEPVMTLNDHTDAPMSLL 282
            H++P+    +    +  +       T   + L       +    +    DHT      +
Sbjct: 13  NHSKPIPPFLLDLDSQ-SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC-V 70

Query: 283 CW--D-QFLLSCSLDHTIKVW-------FATGRGNLEAAYTHKEDNGVLALGGLND---- 328
            +  D ++L +   + T +V+        A    +  A    +  N   +          
Sbjct: 71  KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129

Query: 329 ---PDGKPVLICACNDNTVHL 346
              PDGK  L     D  + +
Sbjct: 130 CFSPDGK-FLATGAEDRLIRI 149

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 17/104 (16%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVAN 223
                GH+  V  +A     + + SGS+D     W+ +S      L G    V S  VA 
Sbjct: 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS--VAV 360

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEP 267
               +   +             +   +GS D   R+W+   + P
Sbjct: 361 ANGSSLGPEY------------NVFATGSGDCKARIWKYKKIAP 392

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 28/147 (19%)

Query: 163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMV 220
                 K   H   ++ +A       L +  +      +++ ++ E +            
Sbjct: 480 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT------ 533

Query: 221 VANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHT 275
                        HT  V C++       RL +GS+DN++ VW ++     P++    H 
Sbjct: 534 ------------FHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 580

Query: 276 DAPMSLLCW--DQFLLSCSLDHTIKVW 300
            + ++ + W  +  ++S   D  IK W
Sbjct: 581 MSSVNSVIWLNETTIVSAGQDSNIKFW 607

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 38/275 (13%), Positives = 76/275 (27%), Gaps = 73/275 (26%)

Query: 170 LEGHEKAVSGIALPLRSDKLFS--------GSRDGTA--WNIESSAE---FSLDGPVGEV 216
              H    +            S        G   G    W+   +      ++    G V
Sbjct: 55  YTEHSHQTTVAK--------TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 106

Query: 217 YSMVVA----NEMLFAGAQD--------------------GHTRPVTCLAV---GRSRLC 249
               ++    ++ + A  +                     G  R +  +        R+ 
Sbjct: 107 KD--ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW-FATGR 305
           SGS DNT+ ++E    +   T  +HT    S + +        S   D TI ++    G 
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS-VRYNPDGSLFASTGGDGTIVLYNGVDGT 223

Query: 306 GNLEAAYTHKEDNGVLALGGLND--------PDGKPVLICACNDNTVHLYELPSFMERGR 357
                  T   ++  L     +         PDG   +  A  D T+ ++ + +      
Sbjct: 224 ------KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKT 276

Query: 358 IFSKHEVRVIEIG--PD-KLFFTGDGAGMLGVWKL 389
           I     +   ++G     +   +    G +     
Sbjct: 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 311

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 78.0 bits (193), Expect = 9e-16
 Identities = 32/218 (14%), Positives = 51/218 (23%), Gaps = 46/218 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES--------SAEFSLDGPVGEV 216
            +    H K V  +          S   DGT   +N                     G V
Sbjct: 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242

Query: 217 YSMV---------------------VANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGS 252
           + +                      VA   +      G       L +    +  L S S
Sbjct: 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALVSIS 301

Query: 253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVW-FATGRGNL 308
            +  I     +          H  A  + L      + L S   +  I  W  +TG  N 
Sbjct: 302 ANGFINFVNPELGSIDQVRYGHNKAITA-LSSSADGKTLFSADAEGHINSWDISTGISNR 360

Query: 309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
                H     +  +       G   L     D+ + +
Sbjct: 361 VFPDVH--ATMITGIK--TTSKGD--LFTVSWDDHLKV 392

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 44/232 (18%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFS----LDGPVGEVYSMVVA- 222
            + H   ++GI        LF+ S D          S   S     +    +   + V+ 
Sbjct: 363 PDVHATMITGIKTT-SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA 421

Query: 223 NEMLFAGAQDGHTR--------------PVTCLAV---GRSRLCSGSMDNTIRVWELDTL 265
           +  +   A   H                  +C+A+    +  +  G  D+ + V++L   
Sbjct: 422 DGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGA 480

Query: 266 EPVM-TLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT---HKEDN 318
                    H     S + +     FL++      +  +       L    +   H    
Sbjct: 481 SVSEVKTIVHPAEITS-VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--TA 537

Query: 319 GVLALGGLND--PDGKPVLICACNDNTVHLYELPSFMERGRIFSK-HEVRVI 367
            V  +       PD    L     DN+V ++ +    +   I    H +  +
Sbjct: 538 KVACV----SWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV 584

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 53/193 (27%)

Query: 191 SGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GR 245
           +G+   T    ++             E+Y+               H+   T       G 
Sbjct: 37  NGTSVYTVPVGSLTD----------TEIYT--------------EHSHQTTVAKTSPSGY 72

Query: 246 SRLCSGSMDNTIRVWELDTLEPVM--TLNDHTDAPMSLLCWD---QFLLSCSLDH--TIK 298
               SG +   +R+W+      ++  T+   +      + WD   + + +          
Sbjct: 73  -YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGH 130

Query: 299 VW-FATGR--GNLEAAYTHKEDNGVLALGGLND--PDGKPVLICACNDNTVHLYELPSFM 353
           V+ F TG   GNL           + ++    D  P     +I   +DNTV ++E P F 
Sbjct: 131 VFLFDTGTSNGNLTG---Q--ARAMNSV----DFKPSRPFRIISGSDDNTVAIFEGPPF- 180

Query: 354 ERGRIFSKHEVRV 366
           +    F +H   V
Sbjct: 181 KFKSTFGEHTKFV 193

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 53.7 bits (130), Expect = 6e-08
 Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 22/138 (15%)

Query: 221 VANEMLFAGAQDGHTRPVTCLAV---GRS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTD 276
            +   LF             L     G   + C+G+   T+ V  L   E      +H+ 
Sbjct: 4   FSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE---IYTEHSH 60

Query: 277 APMSLLCW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYT-HKEDNGVLALGGLNDPDG 331
                        +  S  +   +++W        L+           V  +    D + 
Sbjct: 61  QTTV-AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF--SGPVKDISW--DSES 115

Query: 332 KPVLICAC---NDNTVHL 346
           K   I A     +   H+
Sbjct: 116 K--RIAAVGEGRERFGHV 131

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 25/108 (23%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYS 218
              L        H   V+ ++    + +L +GS D +   WN+   ++  +         
Sbjct: 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI--------- 573

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELD 263
                       +  H        +       + S   D+ I+ W + 
Sbjct: 574 ----------IIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWNVP 610

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 31/147 (21%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
            A+L     A   +A+   S   FS   DG    W++ +         +   +       
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-------QTLVRQFQ------ 180

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
                   GHT   +C+ +   G  +L +G +DNT+R W+L     +    D T    SL
Sbjct: 181 --------GHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSL 230

Query: 282 -LCWD-QFLLSCSLDHTIKVW-FATGR 305
             C   ++L        ++V       
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPD 257

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 77.9 bits (193), Expect = 4e-16
 Identities = 31/187 (16%), Positives = 52/187 (27%), Gaps = 37/187 (19%)

Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML 226
                +  +    L      L  G    T   W++ +         +             
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAEL--------- 137

Query: 227 FAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
                         LA+    +    S   D  I VW+L     V     HTD     + 
Sbjct: 138 -----TSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC-ID 190

Query: 284 W--D-QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC 339
              D   L +  LD+T++ W    GR      +     + + +LG    P G+  L    
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGR--QLQQHDFT--SQIFSLG--YCPTGE-WLAVGM 243

Query: 340 NDNTVHL 346
             + V +
Sbjct: 244 ESSNVEV 250

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 34/165 (20%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
           T++ + +GH    S I +     KL++G  D T   W++    +        +++S  + 
Sbjct: 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS--LG 231

Query: 223 ----NEMLFAGAQD-----------------GHTRPVTCLAV---GRSRLCSGSMDNTIR 258
                E L  G +                   H   V  L     G+    S   DN + 
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLN 290

Query: 259 VWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW 300
            W       +      + + +S       D+++++ S D    V+
Sbjct: 291 AWRTPYGASIFQS-KESSSVLS-CDISVDDKYIVTGSGDKKATVY 333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 16/144 (11%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQ 286
             ++P     V   G+ +      D  I          + TLN H +   + +      +
Sbjct: 7   MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCA-VTISNPTR 64

Query: 287 FLLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT 343
            + +      +KVW  +       +        DN + +   L  PDG   LI     +T
Sbjct: 65  HVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGC-TLIVGGEAST 120

Query: 344 VHLYELPSFMER-GRIFSKHEVRV 366
           + +++L +   R     +      
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPAC 144

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 12/120 (10%), Positives = 31/120 (25%), Gaps = 29/120 (24%)

Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA---- 222
           +       +  +      + L  G         ++    ++ L      V S  +     
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS--LKFAYC 276

Query: 223 NEMLFAGAQD-----------------GHTRPVTCLAV---GRSRLCSGSMDNTIRVWEL 262
            +   +  +D                   +  V    +    +  + +GS D    V+E+
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 47/218 (21%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
           +M+     H + +    L     +L + S D T   + +E          + +  +    
Sbjct: 2   SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLT---- 52

Query: 223 NEMLFAGAQDGHTRPVTCLAV-----GRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHT 275
                     GH  PV  +       G   L S S D  + +W+ +      +     H+
Sbjct: 53  ----------GHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101

Query: 276 DAPMSLLCW--D---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL------- 323
            +  S+  W        LL  S D  + V      G            GV +        
Sbjct: 102 ASVNSV-QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160

Query: 324 ----GGLNDPDGKPVLICACNDNTVHLYELPSFMERGR 357
                     + +   +    DN V +++  S  +   
Sbjct: 161 EEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYV 197

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELD--TLEPVMTLNDHTDAPMSLLCW--- 284
            H   +    +   G+ RL + S D TI+++E++  T + + TL  H       + W   
Sbjct: 9   AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWAHP 66

Query: 285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDGKPVLICACND 341
                L SCS D  + +W     G       H      V ++       G  +L+ A +D
Sbjct: 67  KFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSD 124

Query: 342 NTVHLYELPSFM-ERGRIFSKHEVRV 366
             V + E          I   H + V
Sbjct: 125 GKVSVVEFKENGTTSPIIIDAHAIGV 150

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 46/179 (25%)

Query: 163 GLTMLAKLEGHEKAVSGIA-----------LPLRSD--KLFSGSRDGTA--WNIESSAEF 207
           G T    ++ H   V+  +                +  K  +G  D     W   S A+ 
Sbjct: 136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ- 194

Query: 208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWEL 262
                +                  +GH+  V  +A     + RS L S S D T  +W  
Sbjct: 195 --TYVLESTL--------------EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238

Query: 263 DTLEP-----VMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
           D  +      ++      D       W      L     D+ + +W     G  E A  
Sbjct: 239 DNEQGPWKKTLLKEEKFPDVLWR-ASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE 296

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 46/166 (27%)

Query: 161 GEGLTMLAKLEGHEKAVSGIA--LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEV 216
           GE   ++  L GHE  V  +    P     L S S DG    W  E+       G   ++
Sbjct: 42  GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-------GRWSQI 94

Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDT--LEPVM 269
                            H+  V  +       G   L   S D  + V E         +
Sbjct: 95  AVH------------AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPI 141

Query: 270 TLNDHTD-------APMSLLCWD--------QFLLSCSLDHTIKVW 300
            ++ H         AP ++            +  ++   D+ +K+W
Sbjct: 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 42/178 (23%)

Query: 165 TMLAKLEGHEKAVSGIA---LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSM 219
            + + LEGH   V  +A     L    L S S+D T   W          D   G     
Sbjct: 197 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT--------QDNEQGPWKKT 248

Query: 220 VVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT---LEPVMTLND 273
           ++         ++     +   +    G   L     DN + +W+ +     EP   ++ 
Sbjct: 249 LLK--------EEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLEGKWEPAGEVHQ 299

Query: 274 HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG 331
                           S     T K +    +  ++  ++    N  +    L   + 
Sbjct: 300 GGGG------------SGGGGATSKEFDGPCQNEIDLLFSE--CNDEIDNAKLIMKER 343

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 45/216 (20%)

Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           M+     H + +    L     +L + S D T   + +E          + +  +     
Sbjct: 1   MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLT----- 50

Query: 224 EMLFAGAQDGHTRPVTCLAVGRS----RLCSGSMDNTIRVWELDT--LEPVMTLNDHTDA 277
                    GH  PV  +          L S S D  + +W+ +      +     H+ +
Sbjct: 51  ---------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101

Query: 278 PMSLLCW-----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL--------- 323
             S+  W        LL  S D  + V      G            GV +          
Sbjct: 102 VNSV-QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160

Query: 324 --GGLNDPDGKPVLICACNDNTVHLYELPSFMERGR 357
                   + +   +    DN V +++  S  +   
Sbjct: 161 DGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYV 195

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 78.5 bits (193), Expect = 8e-16
 Identities = 44/252 (17%), Positives = 72/252 (28%), Gaps = 41/252 (16%)

Query: 164 LTMLAKLEGHEKAVSGIAL-PLRSDKLF-SGSRDGTA--WNIESSAE---FSLDGPVGEV 216
            + +A    H  +V+ +   P     L    S DG       + +       +D     V
Sbjct: 89  WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148

Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD----TLEPVMTLN 272
            S   +    +A A              R +  +G  DN +++W+ +    T     TL 
Sbjct: 149 NS--AS----WAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE 201

Query: 273 DHTDAPMSLLCWD------QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGL 326
            H+D    +  W        +L S S D T  +W                   +L     
Sbjct: 202 GHSDWVRDV-AWSPTVLLRSYLASVSQDRTCIIWTQDNE-------QGPWKKTLLKEEKF 253

Query: 327 ND--------PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTG 378
            D          G  VL  +  DN V L++     +       H+      G        
Sbjct: 254 PDVLWRASWSLSGN-VLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEF 312

Query: 379 DGAGMLGVWKLL 390
           DG     +  L 
Sbjct: 313 DGPCQNEIDLLF 324

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELD--TLEPVMTLNDHTDAPMSLLCW--- 284
            H   +    +   G+ RL + S D TI+++E++  T + + TL  H       + W   
Sbjct: 7   AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWAHP 64

Query: 285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDGKPVLICACND 341
                L SCS D  + +W     G       H      V ++       G  +L+ A +D
Sbjct: 65  KFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSD 122

Query: 342 NTVHLYELPSFMERGR-IFSKHEVRV 366
             V + E          I   H + V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGV 148

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 66.5 bits (162), Expect = 6e-12
 Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 46/166 (27%)

Query: 161 GEGLTMLAKLEGHEKAVSGI--ALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEV 216
           GE   ++  L GHE  V  +  A P     L S S DG    W  E+       G   ++
Sbjct: 40  GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-------GRWSQI 92

Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDTLEPV--M 269
                            H+  V  +       G   L   S D  + V E         +
Sbjct: 93  AVH------------AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPI 139

Query: 270 TLNDHTD-------APMSLLCWD--------QFLLSCSLDHTIKVW 300
            ++ H         AP ++            +  ++   D+ +K+W
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 46/179 (25%)

Query: 163 GLTMLAKLEGHEKAVSGIA-----------LPLRSD--KLFSGSRDGTA--WNIESSAEF 207
           G T    ++ H   V+  +                +  K  +G  D     W   S A+ 
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ- 192

Query: 208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWEL 262
                +                  +GH+  V  +A     + RS L S S D T  +W  
Sbjct: 193 --TYVLESTL--------------EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236

Query: 263 DT-----LEPVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
           D       + ++      D       W      L     D+ + +W     G  E A  
Sbjct: 237 DNEQGPWKKTLLKEEKFPDVLWR-ASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE 294

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 36/165 (21%)

Query: 165 TMLAKLEGHEKAVSGIA---LPLRSDKLFSGSRDGTA--WNIES---------------- 203
            + + LEGH   V  +A     L    L S S+D T   W  ++                
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254

Query: 204 ----SAEFSLDGPVGEVYSMVVANE----MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN 255
                A +SL G V     + ++       L+    +G   P     V +    SG    
Sbjct: 255 DVLWRASWSLSGNV-----LALSGGDNKVTLWKENLEGKWEPA--GEVHQGGGGSGGGGA 307

Query: 256 TIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW 300
           T + ++      +  L    +  +            +  +T   +
Sbjct: 308 TSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKF 352

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 43/214 (20%)

Query: 166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE---FSLDGPVGEVYSMV 220
           M+     H + +    +     ++ + S D T   + +E        +L G  G V+   
Sbjct: 1   MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-- 58

Query: 221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHTDAP 278
           V     +A  + G            + L S S D  + +W+ +      +     H+ + 
Sbjct: 59  VD----WAHPKFG------------TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV 102

Query: 279 MSLLCW-----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL---------- 323
            S+  W        LL  S D  + V      G            GV +           
Sbjct: 103 NSV-QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161

Query: 324 -GGLNDPDGKPVLICACNDNTVHLYELPSFMERG 356
                  + +   +    DN V +++  S  +  
Sbjct: 162 GEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTY 194

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 70.7 bits (174), Expect = 5e-14
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELD--TLEPVMTLNDHTDAPMSLLCW--- 284
            H   +    +   G+ R+ + S D TI+++E++  T + + TL  H       + W   
Sbjct: 7   AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWAHP 64

Query: 285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDGKPVLICACND 341
                L SCS D  + +W     G       H      V ++       G  +L+ A +D
Sbjct: 65  KFGTILASCSYDGKVMIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSD 122

Query: 342 NTVHLYELPSFMERGR-IFSKHEVRV 366
             V + E          I   H + V
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGV 148

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 29/166 (17%), Positives = 49/166 (29%), Gaps = 46/166 (27%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGTA--WNIESSAEFSLDGPVGEV 216
           GE   ++  L GHE  V  +          L S S DG    W  E+       G   ++
Sbjct: 40  GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-------GRWSQI 92

Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDTLEPV--M 269
                            H+  V  +       G   L   S D  + V E         +
Sbjct: 93  AVH------------AVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPI 139

Query: 270 TLNDHTD-------APMSLLCWD--------QFLLSCSLDHTIKVW 300
            ++ H         AP ++            +  ++   D+ +K+W
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 30/175 (17%), Positives = 49/175 (28%), Gaps = 47/175 (26%)

Query: 170 LEGHEKAVSGIA-------------LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVG 214
           ++ H   V+  +                 S K  +G  D     W   S A+      + 
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLE 197

Query: 215 EVYSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDT----- 264
                             GH+  V  +A     + RS + S S D T  +W  D      
Sbjct: 198 STLE--------------GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243

Query: 265 LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYT-HK 315
            + ++      D       W      L     D+ + +W     G  E A   H+
Sbjct: 244 KKTLLKEEKFPDVLWR-ASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQ 297

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 50/238 (21%), Positives = 83/238 (34%), Gaps = 58/238 (24%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFS--------LDGPVGE 215
             +L GH+K   G++  P  +  L S S D T   W+I ++ +            G    
Sbjct: 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 233

Query: 216 VYSMVVA----NEMLFA-GAQD---------------------GHTRPVTCLA---VGRS 246
           V    VA    +E LF   A D                      HT  V CL+       
Sbjct: 234 VED--VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291

Query: 247 RLCSGSMDNTIRVWELDTLE-PVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVW- 300
            L +GS D T+ +W+L  L+  + +   H D    +  W    +  L S   D  + VW 
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV-QWSPHNETILASSGTDRRLHVWD 350

Query: 301 FATGRGNLEAAYTHKEDNGVLA-LGG----LND----PDGKPVLICACNDNTVHLYEL 349
            +                 +L   GG    ++D    P+   ++     DN + ++++
Sbjct: 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 38/226 (16%)

Query: 169 KLEGHEKAVSGIA-LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEM 225
               HE  V+    +P  +  + + +       ++              +    +     
Sbjct: 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR---- 178

Query: 226 LFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDT-------LEPVMTLNDHT 275
                  GH +    L+        L S S D+TI +W+++        ++       HT
Sbjct: 179 -------GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231

Query: 276 DAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYT---HKEDNGVLALGGLND 328
                 + W    +    S + D  + +W        + ++T   H  +   L+     +
Sbjct: 232 AVVED-VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF----N 286

Query: 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFSKH--EVRVIEIGPD 372
           P  + +L     D TV L++L +   +   F  H  E+  ++  P 
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 23/109 (21%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNI-----ESSAEFSLDGPVGEVYS 218
           L   E H+  +  +   P     L S   D     W++     E S E + DGP      
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP------ 367

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT 264
                E+LF     GHT  ++  +        +CS S DN ++VW++  
Sbjct: 368 ----PELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 78.3 bits (193), Expect = 5e-16
 Identities = 23/207 (11%), Positives = 63/207 (30%), Gaps = 21/207 (10%)

Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAG 229
                V+ I +    D     S+DG      +    + S    +       +  +     
Sbjct: 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNF--- 165

Query: 230 AQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTL--NDHTDAPMSLLCW 284
               +   V   A     +S L + +  + + ++++ TLE +  +  +    A  S +C 
Sbjct: 166 --GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS-ICI 222

Query: 285 D---QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND-PDGKPVLICAC 339
           D     L+  +    I +W        L  +++  +   +  +           +++   
Sbjct: 223 DEECCVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280

Query: 340 NDNTVHLYELPSFMERGRIFSKHEVRV 366
           +   + ++           F   + + 
Sbjct: 281 SKTFLTIWNFVKG-HCQYAFINSDEQP 306

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 24/142 (16%)

Query: 231 QDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLN-----DHTDAPMSLL 282
            +     +T  AV       L +GS    I++W L  +      +     D +      +
Sbjct: 59  MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQ-I 117

Query: 283 CW---DQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLN----------- 327
                       S D  I V      +   E  + + E    + L               
Sbjct: 118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF 177

Query: 328 DPDGKPVLICACNDNTVHLYEL 349
             + K +L+   N + V ++++
Sbjct: 178 VNEEKSLLVALTNLSRVIIFDI 199

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 29/255 (11%), Positives = 64/255 (25%), Gaps = 56/255 (21%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGT--AWNIESSAE-FSLDGPV--GEVYSMV 220
           L     +E AV   A        L + +       ++I +      ++     G V S+ 
Sbjct: 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221

Query: 221 VA--NEMLFAGAQDG-------------------HTRPVTCLAV------GRSRLCSGSM 253
           +     +L  G   G                      P+T + V          +  GS 
Sbjct: 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281

Query: 254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT 313
              + +W            +  + P        FL        +                
Sbjct: 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEH----FLPIEKGLEELNFC------------G 325

Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373
            +  N +  +          +L+     +++ ++ L + +   +             P +
Sbjct: 326 IRSLNALSTISV----SNDKILLTDEATSSIVMFSL-NELSSSKAVISPSRFSDVFIPTQ 380

Query: 374 LFFTGDGAGMLGVWK 388
              T +   +L   K
Sbjct: 381 --VTANLTMLLRKMK 393

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 24/211 (11%), Positives = 62/211 (29%), Gaps = 52/211 (24%)

Query: 165 TMLAKL-EGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMV 220
            ++A L E    +++  A+ P  +  L +GS  G    WN++                  
Sbjct: 53  KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-------------- 98

Query: 221 VANEMLFAGAQDGHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTLN------ 272
              E+  +      +  VT + +          S D  I V +++  +    +       
Sbjct: 99  --GEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156

Query: 273 ---------DHTDAPMSLLCWDQ----FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319
                       +  + +  +       L++ +    + ++      ++      +    
Sbjct: 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF------DIRTLERLQIIEN 210

Query: 320 VLALGGLN----DPDGKPVLICACNDNTVHL 346
               G ++    D +   VLI       + +
Sbjct: 211 SPRHGAVSSICIDEECC-VLILGTTRGIIDI 240

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 14/153 (9%), Positives = 34/153 (22%), Gaps = 31/153 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEML 226
                  ++  S          L   +  G       S     +  +            L
Sbjct: 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKI------------L 343

Query: 227 FAGAQDG-------HTRPVTCLAVGRS--------RLCSGSMDNTIRVWELDTLEPVMTL 271
                         +    +   +  S           + ++   +R  +  +   V   
Sbjct: 344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403

Query: 272 NDHTDAPMSLLCWD----QFLLSCSLDHTIKVW 300
             H D   S+   +      L++C     I ++
Sbjct: 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 33/193 (17%)

Query: 161 GEGLTMLAKLEGHEKAVSGIAL-P-LRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEV 216
           G     L  L   + ++  +   P     KL     DG    ++    ++        E+
Sbjct: 97  GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156

Query: 217 YSMVVANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDT--LEPVM 269
             +        +     H +   CL+         +L   +++  I         L    
Sbjct: 157 KVL--------SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA 208

Query: 270 TLNDHTD-------APMSLLCWDQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVL 321
            L  H         AP S+  W Q + +   D  I+++        L +     E++   
Sbjct: 209 KLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLAS-----EESLTN 262

Query: 322 ALGGLNDPDGKPV 334
           +    N  D    
Sbjct: 263 SNMFDNSADVDMD 275

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 23/222 (10%), Positives = 58/222 (26%), Gaps = 63/222 (28%)

Query: 167 LAKLEGHEKAVSGIAL--PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
                 H+ ++  I    P     + S S D T   W  +   E        ++ ++   
Sbjct: 50  SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-- 107

Query: 223 NEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA 277
                          +  +      +G  +L     D  +R+++      + +    ++ 
Sbjct: 108 ----------DSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEM 156

Query: 278 PMSLLCWD------------------QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDN 318
            +  +                     + L   +L+  I       G+ ++ A        
Sbjct: 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-------- 208

Query: 319 GVLALGGLND--------PDGKPV---LICACNDNTVHLYEL 349
               L G           P        +   C D  + ++++
Sbjct: 209 ---KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 22/159 (13%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT----LEPVMTLNDHTDAPMSLLCW- 284
           GH   V  +     GR  + + S D  I+V++LD      E   +   H  + ++ + W 
Sbjct: 9   GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA-IDWA 66

Query: 285 -DQF---LLSCSLDHTIKVW-FATGRGNLEAA-----YTHKE-DNGVLALGGLNDPDGKP 333
             ++   + S S D T+K+W     +            T  +    + ++       G  
Sbjct: 67  SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL- 125

Query: 334 VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPD 372
            L C  ND  + LY+     +        E++V+ I P 
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 25/158 (15%)

Query: 167 LAKLEGHEKAVSGIA----LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMV 220
            AKL GH+  +  I+    +      + +G +DG    + I       L        S +
Sbjct: 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS-PLASEESLTNSNM 265

Query: 221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                 F  + D         A         + +    +     +E +   +DH     S
Sbjct: 266 ------FDNSADVDM-----DA---QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311

Query: 281 LLCW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYTHK 315
            + W      L S   D  +++W AT     +      
Sbjct: 312 -VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 44/216 (20%), Positives = 75/216 (34%), Gaps = 44/216 (20%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
           T L  + GH+  V  ++       L SGSR G     ++  +                  
Sbjct: 167 TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA------NHQIGTLQ---- 214

Query: 223 NEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPM 279
                     GH+  V  LA    G  +L SG  DN +++W+  +  P  T  +H  A  
Sbjct: 215 ----------GHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263

Query: 280 SLLCW---DQFLL---SCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGK 332
           + + W      LL     ++D  I  W  ATG   +       +   ++       P  K
Sbjct: 264 A-VAWCPWQSNLLATGGGTMDKQIHFWNAATGA-RVNTVDAGSQVTSLIWS-----PHSK 316

Query: 333 PVL-ICACNDNTVHLYELPS-FMERGRIFSKHEVRV 366
            ++      DN + ++   S  + +      H+ RV
Sbjct: 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV 352

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 186 SDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV 243
           +  + + + +     WN +S +  +L                    A+   +  V  +  
Sbjct: 103 NLNVVAVALERNVYVWNADSGSVSAL--------------------AETDESTYVASVKW 142

Query: 244 ---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-QFLLSCSLDHTIKV 299
              G   L  G  +  + ++++++   + T+  H       L W+   L S S    I  
Sbjct: 143 SHDGS-FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGC-LSWNRHVLSSGSRSGAIHH 200

Query: 300 W-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
                    +     H   + V  L      DG   L    NDN V +++  S
Sbjct: 201 HDVRIANHQIGTLQGHS--SEVCGLAW--RSDGL-QLASGGNDNVVQIWDARS 248

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 35/147 (23%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLF--SGSRDGTA--WNIESSAEF-SLDGPVGEVYSM- 219
                 H  AV  +A  P +S+ L    G+ D     WN  + A   ++D    +V S+ 
Sbjct: 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLI 310

Query: 220 -----------------------VVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSM 253
                                    ++ +        H   V   A+   GR  L + + 
Sbjct: 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAAS 369

Query: 254 DNTIRVWELDTLEPVMTLNDHTDAPMS 280
           D  ++ W +   + V      T  P S
Sbjct: 370 DENLKFWRVYDGDHVKRPIPITKTPSS 396

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 42/218 (19%)

Query: 170 LEGHEKAVSGIA---LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
               + ++  ++     L  + L +GS       W ++ S +      + +         
Sbjct: 35  TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----TIPK--------- 80

Query: 225 MLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                AQ  HT PV  +      S++ + S D T ++W+L + + +  +  H     + +
Sbjct: 81  -----AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKT-I 133

Query: 283 CWD-----QFLLSCSLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI 336
            W        +++ S D T+K W   +           +          +  P    V+ 
Sbjct: 134 HWIKAPNYSCVMTGSWDKTLKFWDTRSS----NPMMVLQLPERCYCA-DVIYPMA--VVA 186

Query: 337 CACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK 373
            A     V+  E      R      KH+ R + I  DK
Sbjct: 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK 224

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 36/187 (19%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLF 227
            + H   V  +       K+F+ S D TA  W++ S+    +                  
Sbjct: 82  QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---------------- 125

Query: 228 AGAQDGHTRPVTCLAVGRS----RLCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSLL 282
                 H  PV  +   ++     + +GS D T++ W+  +  P+M L          ++
Sbjct: 126 ------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179

Query: 283 CWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV---LICAC 339
                + +      +                 K  +  +A+      D +          
Sbjct: 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF----KDKQNKPTGFALGS 235

Query: 340 NDNTVHL 346
            +  V +
Sbjct: 236 IEGRVAI 242

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 244 GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL-----LCWDQFLLSCSLDHTIK 298
           G S   S + DN   + +++            D+   L          FL++ S  + ++
Sbjct: 14  GTSMFGSATTDNHNPMKDIEVTSS------PDDSIGCLSFSPPTLPGNFLIAGSWANDVR 67

Query: 299 VW--FATGRGNLEAAYTHKEDNGVLALGGLND----PDGKPVLICACNDNTVHLYEL 349
            W    +G+   +A   H         G + D     DG   +  A  D T  +++L
Sbjct: 68  CWEVQDSGQTIPKAQQMHT--------GPVLDVCWSDDGS-KVFTASCDKTAKMWDL 115

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 23/200 (11%), Positives = 47/200 (23%), Gaps = 44/200 (22%)

Query: 169 KLEGHEKAVSGIALPLRSD--KLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSMVVAN 223
           ++  H+  V  I      +   + +GS D T   W+  SS     L  P    Y   V  
Sbjct: 122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIY 180

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
            M                      + +      +   E    E     +        +  
Sbjct: 181 PMA--------------------VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI 220

Query: 284 W------DQFLLSCSLDHTIKVWFATGRGNLEAAYT---HKEDNGVLALGGLND------ 328
           +             S++  + + +       +  +T   H+ +    +            
Sbjct: 221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIA 280

Query: 329 --PDGKPVLICACNDNTVHL 346
             P     L    +D     
Sbjct: 281 FHPVHG-TLATVGSDGRFSF 299

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 16/143 (11%), Positives = 32/143 (22%), Gaps = 20/143 (13%)

Query: 170 LEGHEKAVSGIAL----PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
               +     +A+      +      GS +G      I        +      ++     
Sbjct: 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN------FTFKCHR 261

Query: 224 EMLFAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS 280
                 +       V  +A   V    L +   D     W+ D    + T         +
Sbjct: 262 SNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320

Query: 281 LLCWD---QFLLSCSLDHTIKVW 300
             C++         S     K  
Sbjct: 321 -CCFNHNGNIFAYASSYDWSKGH 342

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 38/201 (18%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           +A+   H  +V  +     + + L SG  +G    W++    E   +             
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP---------- 155

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLND------H 274
             L  G        V  LA          S    N   +W+L   + V+ L+        
Sbjct: 156 --LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213

Query: 275 TDAPMSLLCWD----QFLLSCS---LDHTIKVW-FATGRGNLEAAYT-HKEDNGVLALGG 325
                  + W       + + +    D +I +W        L+     H+   G+L+L  
Sbjct: 214 KQQLSV-VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ--KGILSL-D 269

Query: 326 LNDPDGKPVLICACNDNTVHL 346
               D   +L+ +  DNTV L
Sbjct: 270 WCHQDEH-LLLSSGRDNTVLL 289

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 49/207 (23%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
             +       V  +A     +    S      A  W++++  E                 
Sbjct: 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE---------------VI 202

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGS---MDNTIRVWELDTLE-PVMTLND-HT 275
            + +     G  + ++ +       +R+ + +    D +I +W+L     P+ TLN  H 
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ 262

Query: 276 DAPMSLLCW----DQFLLSCSLDHTIKVW-FATGR--GNLEAAYTHKEDNGVLALGGLND 328
              +SL  W    +  LLS   D+T+ +W   +                N          
Sbjct: 263 KGILSL-DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---AR--GNWC------FK 310

Query: 329 ----PDGKPVLICACNDNTVHLYELPS 351
               P+   +  CA  DN + +  L +
Sbjct: 311 TKFAPEAPDLFACASFDNKIEVQTLQN 337

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 18/168 (10%), Positives = 52/168 (30%), Gaps = 35/168 (20%)

Query: 192 GSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLC 249
           G+            +A F+          +        +G   G            +   
Sbjct: 1   GAMGSMVKLAEFSRTATFAW-SHDKIPLLV--------SGTVSG------------TVDA 39

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHT-DAPMSLLCW---DQFLLSCSLDHTIKVW-FATG 304
           + S D+++ +W L   +    +     D+  + L W   ++ +     + +++++     
Sbjct: 40  NFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEA 99

Query: 305 RGNLEAAYT---HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL 349
              + +      H   + V  +   N      VL    N+  + ++++
Sbjct: 100 NNAINSMARFSNHS--SSVKTV-KFNAKQDN-VLASGGNNGEIFIWDM 143

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 21/142 (14%), Positives = 32/142 (22%), Gaps = 41/142 (28%)

Query: 170 LEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEML 226
            +GH+K +  +         L S  RD T   WN ES+        + +           
Sbjct: 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE------QLSQF---------- 301

Query: 227 FAGAQDGHTRPVTCLA---VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
                                       S DN I V  L  L   +   +          
Sbjct: 302 -----PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE-------- 348

Query: 284 WDQFLLSCSLDHTIKVWFATGR 305
                 +   +     W    R
Sbjct: 349 ------TKQQESETDFWNNVSR 364

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 28/207 (13%), Positives = 55/207 (26%), Gaps = 50/207 (24%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
           + +L+ H   V+G+     S+++ +   D  A  W ++                      
Sbjct: 45  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT--------------- 89

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT----LEPVMTLNDHTDA 277
                      R   C+      + +   GS    I +   +                  
Sbjct: 90  ----LVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 144

Query: 278 PMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND------ 328
            +S L W      L + S D   +++ A     +E           +  G L        
Sbjct: 145 VLS-LDWHPNSVLLAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSC 202

Query: 329 ---------PDGKPVLICACNDNTVHL 346
                     +G   +    +D+TV L
Sbjct: 203 GWVHGVCFSANGS-RVAWVSHDSTVCL 228

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 42/195 (21%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
           +A      + +S  A    R+ ++     +     +               +V+ +    
Sbjct: 1   MAYHSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSG-------NKWVQVHEL---- 48

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHTDAP 278
                     H   VT +        R+ +   D    VW L     +P + +     A 
Sbjct: 49  --------KEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA 99

Query: 279 MSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE--DNGVLALGGLND--PDG 331
              + W   ++     S    I + +     +       K+   + VL+L    D  P+ 
Sbjct: 100 RC-VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL----DWHPNS 154

Query: 332 KPVLICACNDNTVHL 346
             +L     D    +
Sbjct: 155 V-LLAAGSCDFKCRI 168

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 13/150 (8%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
               +     V  +     S  L +GS D     ++           P      M     
Sbjct: 135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
           M            V  +     G  R+   S D+T+ + + D    V TL   T   ++ 
Sbjct: 195 M---FESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLA- 249

Query: 282 LCW---DQFLLSCSLDHTIKVWFATGRGNL 308
           + +      + +      +   + +  G L
Sbjct: 250 VTFITESSLVAAGHDCFPVLFTYDSAAGKL 279

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 25/202 (12%), Positives = 53/202 (26%), Gaps = 48/202 (23%)

Query: 165 TMLAKLEGHEKAVSGIALPLRS---DKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYS 218
            ++ +       V G+     S    ++   S D T    + +      +L         
Sbjct: 193 ELMFESSSSCGWVHGVCF---SANGSRVAWVSHDSTVCLADADKKMAVATLAS------- 242

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                           T P+  +         + +G  D    ++  D+    ++     
Sbjct: 243 ---------------ETLPLLAVTFITESS-LVAAGH-DCFPVLFTYDSAAGKLSFGGRL 285

Query: 276 DAPMSLLC--WDQFLLSCSLD-HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK 332
           D P               +LD        A     L++ +     N V  +  L    GK
Sbjct: 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK----NSVSQISVL--SGGK 339

Query: 333 PVLIC---ACNDNTVHLYELPS 351
                      D  + ++++ S
Sbjct: 340 AKCSQFCTTGMDGGMSIWDVRS 361

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 27/130 (20%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-WNIESSA-EFSLDGPVGEVYSMVVANE 224
           +A L      +  +     S  + +G       +  +S+A + S  G +           
Sbjct: 237 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296

Query: 225 --MLFAGAQD-----------------GHTRPVTCLAV---GR---SRLCSGSMDNTIRV 259
                    D                  H   V+ ++V   G+   S+ C+  MD  + +
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 356

Query: 260 WELDTLEPVM 269
           W++ +LE  +
Sbjct: 357 WDVRSLESAL 366

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 33/218 (15%), Positives = 75/218 (34%), Gaps = 47/218 (21%)

Query: 163 GLTMLAKLEGHEKAVSGIALPLR------SDKLFSGSRDGTA--WNIESSAEFSLDGPVG 214
               +  ++GH++ ++ I           + ++ +GSRDGT   W+     +   +    
Sbjct: 100 PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM--- 156

Query: 215 EVYSMVVANEMLFAGAQDGHTRPVTCLAVGRS--------RLCSGSMDNTIRVWELDTLE 266
                             G  +   C  V            +C+G  +  I++++L  + 
Sbjct: 157 --------------EPVQGENKRD-CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201

Query: 267 PVMTLNDHTDAPMSLLCWD------QFLLSCSLDHTIKVWFATGRGNLEAAYTHKE---D 317
                N   +   S L +D        L++ SL+    V+    +   +   +  E    
Sbjct: 202 LRWETN-IKNGVCS-LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK 259

Query: 318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER 355
           + V  +  L  P  + + + A     +HL++    ++R
Sbjct: 260 STVWQVRHL--PQNRELFLTAGGAGGLHLWKYEYPIQR 295

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 46/202 (22%)

Query: 170 LEGHEKAVSGIALPLRSDKLFS----GSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
            +G    V        S K  +        G    + I+           G+        
Sbjct: 14  QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH----------GD-------- 55

Query: 224 EMLFAGAQDGHTRPVTCLAVGRS-----RLCSGSMDNTIRVWELDTLE-PVMTLNDHTDA 277
             L    +    +P+ C   G +      L +G     + +W L+  E PV ++  H + 
Sbjct: 56  --LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI 113

Query: 278 PMSLLCWD--------QFLLSCSLDHTIKVW-FATGRGNLEAAYT----HKEDNGVLALG 324
             ++              +++ S D T+KVW        +         +K D   +A G
Sbjct: 114 INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173

Query: 325 GLNDPDGKPVLICACNDNTVHL 346
              + + + V+    ++  + L
Sbjct: 174 NAYNQEER-VVCAGYDNGDIKL 194

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 167 LAKLEGHEKAVSGIA-LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
               + H+  V  +  LP   +   +    G    W  E   + S     G    +  + 
Sbjct: 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311

Query: 224 EMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTL 265
            +L        T+P++ L      R      S D T+RV  +  L
Sbjct: 312 SLL--QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 48/165 (29%)

Query: 170 LEGHEKAVSGIAL-P--LRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE 224
               +  V  +      +  +KL + S +G    +++ +          G          
Sbjct: 205 ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK-----GFASVS----- 254

Query: 225 MLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELD------------------ 263
                 +  H   V  +      R    +      + +W+ +                  
Sbjct: 255 ------EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308

Query: 264 -TLEPVMTLNDHTDAPMSLLCW--D-QFLL-SCSLDHTIKVWFAT 303
            ++  +  +   T    S L W  D + L    S D T++V   T
Sbjct: 309 GSVSLLQNVTLSTQPISS-LDWSPDKRGLCVCSSFDQTVRVLIVT 352

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 33/217 (15%)

Query: 186 SDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV 243
              L   S DG+   +  +  A+                 ++L       +  P+ C   
Sbjct: 23  KSLLLITSWDGSLTVYKFDIQAK---------------NVDLL---QSLRYKHPLLCCNF 64

Query: 244 ---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTI 297
                 ++  G++   I   +L        L ++             D  L++ S D  I
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK-PVLICACNDNTVHLYELPS----F 352
           +V      G+   A  +   N       +   D     LI   N++ V  + LP      
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 353 MERGRIFSKHEVRVIEIGPD--KLFFTGDGAGMLGVW 387
                   K+++R + + P   + +      G + V 
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 238 VTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLN---DHTDAPMSLLCW----DQFL 288
           ++ + +    S L   S D ++ V++ D     + L     +    +    +    D  +
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC-CNFIDNTDLQI 72

Query: 289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL 346
              ++   I      G  + +A   ++ + G+     +        LI A  D  + +
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICR---ICKYGDD-KLIAASWDGLIEV 126

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 14/154 (9%), Positives = 44/154 (28%), Gaps = 36/154 (23%)

Query: 161 GEGLTMLAKLEGHEKAVSGIA-LPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVY 217
            + + +L  L  ++  +     +     +++ G+  G     ++  S  F          
Sbjct: 44  AKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT------ 96

Query: 218 SMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMTLNDH 274
                           +   +    +   G  +L + S D  I V +       +    +
Sbjct: 97  ---------------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141

Query: 275 TDAPMSLL-----CWD---QFLLSCSLDHTIKVW 300
            ++  + +       D     L+    +  ++ +
Sbjct: 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 34/200 (17%)

Query: 167 LAKLEGHEKAVSGIAL-PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVAN 223
              L  +E  +    +     DKL + S DG     +  +  +  +        +  V N
Sbjct: 92  FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC 283
                         +  +    SRL  G  ++ ++ + L   E      + +     +  
Sbjct: 152 -------------KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198

Query: 284 WDQF------LLSCSLDHTIKVWF---ATGRGNLEAAYTHK----EDNGVLALGGLND-- 328
                         S+D  + V F        N    +  +              +N   
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 329 --PDGKPVLICACNDNTVHL 346
             P  K  L  A +D  +  
Sbjct: 259 FSPRHK-FLYTAGSDGIISC 277

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 38/222 (17%), Positives = 62/222 (27%), Gaps = 71/222 (31%)

Query: 167 LAKLEGHEKAVSGIAL-P-LRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
             +  GH+ +V+ +   P      L  GS DG           ++ +             
Sbjct: 96  SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN--------- 146

Query: 223 NEMLFAGAQDGHTRPVTCLA-------------------VGRSRLCSGSMDNTIRVWELD 263
                    + HT     ++                       R  SG  DN I++W+ +
Sbjct: 147 ---------NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197

Query: 264 T---LEPVMTLNDHTD-------APMSLLCWDQFLLSCSLDHTIKVW-FATGRGNLEAAY 312
                +    L  H+D       AP S+      + SCS D  + +W       N  +  
Sbjct: 198 EDGQWKEEQKLEAHSDWVRDVAWAP-SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK 256

Query: 313 THKEDNGVLALGGLND--------PDGKPVLICACNDNTVHL 346
                     L   ND             +L  +  DN V L
Sbjct: 257 L---------LHKFNDVVWHVSWSITAN-ILAVSGGDNKVTL 288

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 24/191 (12%), Positives = 47/191 (24%), Gaps = 51/191 (26%)

Query: 161 GEGLTMLAKLEGHEKAVSGIA-----------------LPLRSDKLFSGSRDGTA--WNI 201
                +      H    + ++                  P    +  SG  D     W  
Sbjct: 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196

Query: 202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA------VGRSRLCSGSMDN 255
           E   ++  +  +                  + H+  V  +A      +  S + S S D 
Sbjct: 197 EEDGQWKEEQKL------------------EAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238

Query: 256 TIRVWELDTLEP----VMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGNL 308
            + +W  D           L+   D    +  W      L     D+ + +W  +  G  
Sbjct: 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHV-SWSITANILAVSGGDNKVTLWKESVDGQW 297

Query: 309 EAAYTHKEDNG 319
                  +  G
Sbjct: 298 VCISDVNKGQG 308

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVM--TLNDHTDAPMSLLCW--- 284
            H   +    +   G  RL + S D +++++++     ++   L  H       + W   
Sbjct: 11  SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQ-VAWAHP 68

Query: 285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDGKPVLICACND 341
                L SCS D  + +W     G  E ++ H   D+ V ++       G  +L C  +D
Sbjct: 69  MYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSD 126

Query: 342 NTVHLYEL--PSFMERGRIFSKHEVRV 366
             + L         E  +I + H +  
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGC 153

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 32/173 (18%), Positives = 45/173 (26%), Gaps = 52/173 (30%)

Query: 165 TMLAKLEGHEKAVSGIAL--PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMV 220
            ++A L GHE  V  +A   P+  + L S S D     W  E+                 
Sbjct: 48  ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN----------------- 90

Query: 221 VANEMLFAGAQDGHTRPVTCLA-----VGRSRLCSGSMDNTIRVWELDT---LEPVMTLN 272
                  +    GH   V  +       G   L  GS D  I +         E     N
Sbjct: 91  --GTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINN 147

Query: 273 DHTD-------------------APMSLLCWDQFLLSCSLDHTIKVW-FATGR 305
            HT                           + +   S   D+ IK+W      
Sbjct: 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 33/276 (11%), Positives = 87/276 (31%), Gaps = 47/276 (17%)

Query: 105 GYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC-----CHWLLGNCVRGDECRFLHSWF 159
            Y+   + S        ++ ++   +   +           + +      DE + +   F
Sbjct: 55  SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR---EDETKKV--IF 109

Query: 160 CGEGLTMLAKLEGHEKAVSGIAL---PLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVG 214
               L   + ++ H             L S +L +    GT   W     A+ S    + 
Sbjct: 110 EKLDLL-DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168

Query: 215 EVYSMVVANEMLFAGAQDGHTRPVTCLAVGR-SRLCSGSMDNTIRVWELDTLEPVM---- 269
              ++ +   +    +    ++  T + +     + +G  + T+++ EL TL P+     
Sbjct: 169 WSPTLELQGTV---ESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES 225

Query: 270 --TLNDHTDAPMSLLCWD---QFLLSCSLDHT---IKVW-FATGR--GNLEAAYTHKEDN 318
             ++ +++++  S + +      L      ++   I ++    G   G+L       + +
Sbjct: 226 QHSMINNSNSIRS-VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 284

Query: 319 GVLALGGLND--------PDGKPVLICACNDNTVHL 346
                   +           G+  L  A  D  +  
Sbjct: 285 LGEF--AHSSWVMSLSFNDSGE-TLCSAGWDGKLRF 317

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 29/180 (16%)

Query: 160 CGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA-----WNIESSAE-FSLDGPV 213
                     +  +  ++  +    +   L       +      +  E      SL  P 
Sbjct: 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 278

Query: 214 GEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDTLEPVMT 270
               +         +  +  H+  V  L+    G   LCS   D  +R W++ T E + T
Sbjct: 279 HSSQA---------SLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITT 328

Query: 271 LNDHTD---APMSLLCWD---QFLLSCSLD---HTIKVW-FATGRGNLEAAYTHKEDNGV 320
           LN H D       +L  D     L    +       K W    G    E+      D  +
Sbjct: 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 23/213 (10%), Positives = 53/213 (24%), Gaps = 31/213 (14%)

Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIE--SSAEFSLDGPVGEVYSM 219
           +      + H+  +  ++    +    S S DG    W+ +   +           V+  
Sbjct: 6   IATANAGKAHDADIFSVS--ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 63

Query: 220 VVANEMLFAGAQDGHTRPVTCLAVGRS----RLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
            + +  +    +              S           D T +V           +  H+
Sbjct: 64  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 123

Query: 276 D-----APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND-- 328
                    +       L++  +  T  +W      +   + T      +   G +    
Sbjct: 124 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 183

Query: 329 ------------PDGKPVLICACNDNTVHLYEL 349
                         G   +    N+ TV + EL
Sbjct: 184 TPSQFATSVDISERGL--IATGFNNGTVQISEL 214

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 22/176 (12%), Positives = 42/176 (23%), Gaps = 33/176 (18%)

Query: 232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCWD----- 285
             H   +  ++   S   S S D  ++VW+   L+     +  ++               
Sbjct: 13  KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 72

Query: 286 ---------------------QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG 324
                                 F      D T KV F            H      L  G
Sbjct: 73  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS--FWALKWG 130

Query: 325 GLNDPDGKP--VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTG 378
                D      L+      T ++++   F +     + +    +E+         
Sbjct: 131 --ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 184

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 19/171 (11%)

Query: 233 GHTRPVTCLAV---GRSRLCSGSMDNTIRVWELDT----LEPVMTLNDHTDAPMSLLCW- 284
                +  L +       +     D ++ V+++D     +  +      +  P + +   
Sbjct: 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA-ISIA 158

Query: 285 --DQFLLSCSLDHTIKVW----FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA 338
             D  ++       +           +   E    H   + +  +  + D DG   +I +
Sbjct: 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSDGHQFIITS 216

Query: 339 CNDNTVHLYELPSFMERGRIFSKHE--VRVIEIGPDKLFFTGDGAGMLGVW 387
             D  + +   P      +    H+  V  I  G D L  +  G   +  W
Sbjct: 217 DRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAW 267

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 36/176 (20%)

Query: 161 GEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFS-------LDGPV 213
            + +  L K     K  + I++      +    + G  ++I+ ++          + G V
Sbjct: 136 SKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV 195

Query: 214 GEVYSMVVA-----NEMLFAGAQD-------------------GHTRPVTCLAVGR-SRL 248
             +  + +      ++ +    +D                   GH   V+ +  G+   L
Sbjct: 196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLL 255

Query: 249 CSGSMDNTIRVWELDTLEPVMTLNDHTDA----PMSLLCWDQFLLSCSLDHTIKVW 300
            S   D+ I  W+  T + + T + ++          L   +F    +      V 
Sbjct: 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 27/152 (17%)

Query: 158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGE 215
               +   +   L GH+  VS I    +   L S   D     W+ ++          G+
Sbjct: 225 SHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT----------GK 273

Query: 216 VYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEP---VMTLN 272
             S    N ++     D H  P              +      V ++   +    V    
Sbjct: 274 NLSTFDYNSLIKPYLNDQHLAPP-------RFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326

Query: 273 DHTDAPMSLLCWD----QFLLSCSLDHTIKVW 300
           + T   + L   +       L   +     V 
Sbjct: 327 EATKCIIILEMSEKQKGDLALKQIITFPYNVI 358

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 28/253 (11%), Positives = 66/253 (26%), Gaps = 47/253 (18%)

Query: 167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE 224
           +         ++ I      D +  G ++G+   ++I+            ++ S  + N 
Sbjct: 91  VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR----------DQLSSFKLDNL 140

Query: 225 MLFAGAQDGHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTL----------- 271
              +        P+  +            S +     + L   E   +            
Sbjct: 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGG 200

Query: 272 -------NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA 322
                     T   +  L       +++   D+++  W     G++  A T  E    + 
Sbjct: 201 DFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW-DANSGHMIMARTVFETEINVP 259

Query: 323 LGGLN-------DPDGKPVLICACN-DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKL 374
                           K   +C  N + T  L       +         + +I++G    
Sbjct: 260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI----SHKSISRGDNQSLTMIDLGYTPR 315

Query: 375 FFTGDGAGMLGVW 387
           +      GM   +
Sbjct: 316 YSITSYEGMKNYY 328

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 26/133 (19%)

Query: 172 GHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ 231
           G        A     + L   +  G                  EV              +
Sbjct: 15  GMSSKPIAAAFDFTQNLLAIATVTGEVH--------IYGQQQVEVV------------IK 54

Query: 232 DGHTRPVTCLA-VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD---QF 287
                 +  +  V    L   +  +T+ V  L + + + T+       ++ +  D    +
Sbjct: 55  LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPG--KITSIDTDASLDW 112

Query: 288 LLSCSLDHTIKVW 300
           +L    + ++ V+
Sbjct: 113 MLIGLQNGSMIVY 125

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 53.0 bits (126), Expect = 8e-08
 Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 33/152 (21%)

Query: 187 DKLFSGSRDGTA--WNIESSAE--FSLDGPVGEVYSMVVA-----NEMLFAGAQDG---- 233
             +  G ++G    +++       F        + S+  A     + ++   A DG    
Sbjct: 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337

Query: 234 --------------HTRPVTCLAV----GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT 275
                           R    + V               +++R         V  L    
Sbjct: 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397

Query: 276 DAPMSLLC--WDQFLLSCSLDHTIKVWFATGR 305
               ++        +L+ S D ++ +  A  R
Sbjct: 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR 429

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 53.0 bits (126), Expect = 9e-08
 Identities = 21/208 (10%), Positives = 60/208 (28%), Gaps = 20/208 (9%)

Query: 189 LFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRL 248
           L   S++GT           +     +V+   +  +          +   T   +  + +
Sbjct: 228 LSFVSQEGTIN------FLEIIDNATDVHVFKMCEKPSLT-LSLADSLITTFDFLSPTTV 280

Query: 249 CSGSMDNTIRVWEL-DTLEPVMTLNDHTDAPMSLLCW-----DQFLLSCSLDHTIKVWFA 302
             G  +  +  ++L D   P      H    +S+        D  + + ++D    ++  
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340

Query: 303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH 362
                 +   +    + ++ +  +  P      I +   +++      +           
Sbjct: 341 KDIATTKTTVSRFRGSNLVPV--VYCPQI-YSYIYSDGASSLRAVPSRAA-FAVHPLVSR 396

Query: 363 E--VRVIEIGPD-KLFFTGDGAGMLGVW 387
           E  +  I +     +   G   G L + 
Sbjct: 397 ETTITAIGVSRLHPMVLAGSADGSLIIT 424

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 15/126 (11%)

Query: 233 GHTRPVTCLAVGRS----RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD--- 285
                +  +                  TI     +     +  +  +D   S        
Sbjct: 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182

Query: 286 QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND--PDGKPVLICACNDNT 343
             L   S D  + V+  +      + +   E+  +  +        +G    +    D T
Sbjct: 183 LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV----KFADNGY--WMVVECDQT 236

Query: 344 VHLYEL 349
           V  ++L
Sbjct: 237 VVCFDL 242

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 17/152 (11%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-----DQFLLSCSLDHTIKVW 300
           +RL      N I + +  T + +  +   +   +  +        ++ +      TI   
Sbjct: 95  NRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154

Query: 301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS 360
                 +    ++ K D    +       D   +L     D  + +Y L S  +    F 
Sbjct: 155 SYED-DSQYIVHSAKSDVEYSSGVL--HKDSL-LLALYSPDGILDVYNLSSPDQASSRFP 210

Query: 361 KH---EVRVIEIGPDKLFFTGDGAGMLGVWKL 389
                +++ ++   +  +   +    +  + L
Sbjct: 211 VDEEAKIKEVKFADNGYWMVVECDQTVVCFDL 242

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 24/226 (10%), Positives = 56/226 (24%), Gaps = 53/226 (23%)

Query: 172 GHEKAVSGIALP--LRSDKLFSGSRDGTA--WNIESSAEFSL-DGPVGEVYSMVVAN--- 223
                +  +     + ++        GT    + E  +++ +        YS  V +   
Sbjct: 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182

Query: 224 EMLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWE 261
            +L   + D                         +  +        +     D T+  ++
Sbjct: 183 LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFD 241

Query: 262 LDTLEPVMTLNDHT----DAPMSLLCWD---QFLLSCSLDH----------TIKVWFATG 304
           L      +    +T             D   + +++ S +             K W    
Sbjct: 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDE 301

Query: 305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350
              L       +   +  + G    DG    I   ND+  ++  L 
Sbjct: 302 ESALCLQSDTADFTDMDVVCG----DGGIAAILKTNDS-FNIVALT 342

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 42/158 (26%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA---WNIES---SAEFSLDGPVGEVYSMVVAN 223
           ++ H   +  + L  +SD + + S+DGT    +  E      EF       +V  M    
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM---- 246

Query: 224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT--------LEPVMTLNDHT 275
                 + DG             +L   S   T+ V+E+          L+  + +    
Sbjct: 247 ----KWSTDGS------------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ 290

Query: 276 DA--------PMSLLCWDQFLLSCSLDHTIKVWFATGR 305
                      +        +   S    + VW  T  
Sbjct: 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM 328

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSW 158
           G   +S + T+  VC HWL G C +GD+C FLH +
Sbjct: 1   GSSGSSGEKTV--VCKHWLRGLCKKGDQCEFLHEY 33

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 123 SGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSW 158
                 S + T+  VC HWL G C +GD+C FLH +
Sbjct: 6   HHHSHMSGEKTV--VCKHWLRGLCKKGDQCEFLHEY 39

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 38/267 (14%), Positives = 71/267 (26%), Gaps = 51/267 (19%)

Query: 148 RGDECRFLHSWFCGEGLT-MLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGTA--WNIES 203
              E     ++   E     L  LE  EK      LP ++   F   + D T   W I  
Sbjct: 67  SRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126

Query: 204 SAE----FSLDGPVGEVYS--MVVANEMLFAGAQD-------------GHTRPVTCLAVG 244
             +    ++L    G       V    +      D              HT  +  +++ 
Sbjct: 127 RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186

Query: 245 R--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-----------DQFLLSC 291
                  S + D  I +W L+  +    + D   A M  L                 +  
Sbjct: 187 SDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245

Query: 292 SLDHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLND-----------PDGKPVLICAC 339
           S   TI++            +   +E          ++             G+   +   
Sbjct: 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR--YMMTR 303

Query: 340 NDNTVHLYELPSFMERGRIFSKHEVRV 366
           +  +V +++L         +  HE   
Sbjct: 304 DYLSVKVWDLNMENRPVETYQVHEYLR 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.77
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.77
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.74
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.74
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.72
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.66
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.55
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.54
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.52
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.51
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.5
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.47
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.44
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.43
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.42
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.34
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.34
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.34
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.32
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.31
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.24
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.22
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.2
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.18
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.1
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.06
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.01
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.01
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.97
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.96
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.96
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.95
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.9
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.89
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.81
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.8
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.76
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.75
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.71
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.7
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.63
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.6
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.53
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.41
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.29
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.29
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.27
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.26
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.07
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.07
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.96
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.83
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.71
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.51
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.5
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.39
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.34
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.32
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.23
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.17
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.17
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.8
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.69
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.68
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.59
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.54
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.35
2rhk_C	72	Cleavage and polyadenylation specificity factor su	96.29
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	96.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.07
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.02
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.94
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.85
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.67
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.63
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.3
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.27
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.83
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.49
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.71
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.66
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.56
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	93.53
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	93.4
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	93.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.59
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	92.07
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	92.01
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.95
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.73
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	91.43
3ott_A	758	Two-component system sensor histidine kinase; beta	91.34
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	91.27
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	90.99
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	90.97
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.4
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	90.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	89.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.28
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	87.19
2rhk_C	72	Cleavage and polyadenylation specificity factor su	86.11
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	84.96
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	84.45
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	84.34
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	82.66
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	82.33
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	82.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	81.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	81.34
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.24
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.2
3ott_A	758	Two-component system sensor histidine kinase; beta	80.05

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-39  Score=310.35  Aligned_cols=264  Identities=22%  Similarity=0.278  Sum_probs=230.7

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      +...+++||.|++|++||++++.+..            ...||...|.++. |+|.+.++++++.++    +|++||+.+
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~------------~l~~h~~~V~~v~-~~~~~~~l~sgs~D~----~i~iwd~~~  181 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYETGDFER------------TLKGHTDSVQDIS-FDHSGKLLASCSADM----TIKLWDFQG  181 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCE------------EECCCSSCEEEEE-ECTTSSEEEEEETTS----CCCEEETTS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEE------------EEeccCCcEEEEE-EcCCCCEEEEEeCCC----eEEEEeCCC
Confidence            67789999999999999999887542            4678888999999 999999998777666    999999987


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      . +++.++.+|...|.+++|+|++++|++|+.|++  +||++++.++.                     ...+|...|.+
T Consensus       182 ~-~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~---------------------~~~~h~~~v~~  239 (410)
T 1vyh_C          182 F-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK---------------------TFTGHREWVRM  239 (410)
T ss_dssp             S-CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---------------------EEECCSSCEEE
T ss_pred             C-ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------EEeCCCccEEE
Confidence            6 788999999999999999999999999999999  69999987653                     11267778888


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----------------------CCEEEEEeCCCc
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----------------------DQFLLSCSLDHT  296 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----------------------~~~l~s~s~Dg~  296 (394)
                      +.++  +.+|++|+.|++|++||++++++...+..|...|.++.|.                      +.+|++++.|++
T Consensus       240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            8886  6789999999999999999999999999999999999996                      348999999999


Q ss_pred             EEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-E
Q 016134          297 IKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-L  374 (394)
Q Consensus       297 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~  374 (394)
                      |++||++++..+..+..|...+..+    .|+|++. +|++++.|++|++||+.+++.+..+.. ...|++++|+|++ +
T Consensus       320 i~iwd~~~~~~~~~~~~h~~~v~~v----~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          320 IKMWDVSTGMCLMTLVGHDNWVRGV----LFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEE----EECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEEEECCCCceEEEEECCCCcEEEE----EEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            9999999999888887776543333    4699998 899999999999999999888777764 6789999999999 9


Q ss_pred             EEEEeCCCeEEEEeCC
Q 016134          375 FFTGDGAGMLGVWKLL  390 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~~  390 (394)
                      |++|+.|+.|++|++.
T Consensus       395 l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          395 VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTSEEEEEC--
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            9999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=297.27  Aligned_cols=266  Identities=16%  Similarity=0.162  Sum_probs=227.9

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..++|||.|++++||+++++...-.          ....||...|.++. +++.+.++++++.++    +|++||+.+
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~----------~~l~gh~~~v~~~~-~~~~~~~l~s~s~D~----~i~lWd~~~  111 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDERLDLQ----------WSLEGHQLGVVSVD-ISHTLPIAASSSLDA----HIRLWDLEN  111 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTEEEEE----------EEECCCSSCEEEEE-ECSSSSEEEEEETTS----EEEEEETTT
T ss_pred             CCCEEEEEcCCCCEEEEECCCCCeeee----------eeeccCCCCEEEEE-ECCCCCEEEEEeCCC----cEEEEECCC
Confidence            356799999999999999986653210          12568889999999 999998888776665    999999998


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      + +.+..+..|...+.+++|+|++++|++++.|+.  +||+++++....                     ...|...|.+
T Consensus       112 ~-~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~---------------------~~~~~~~v~~  169 (321)
T 3ow8_A          112 G-KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS---------------------LDTRGKFILS  169 (321)
T ss_dssp             T-EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE---------------------EECSSSCEEE
T ss_pred             C-CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE---------------------ecCCCceEEE
Confidence            8 788889999999999999999999999999999  699998876521                     1155667778


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE  316 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  316 (394)
                      ++|+  +++|++|+.|+.|++||+++++++.++.+|...|.+++|+  +++|++++.|++|++||++..+....+..|..
T Consensus       170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~  249 (321)
T 3ow8_A          170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS  249 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence            8886  6789999999999999999999999999999999999998  78999999999999999999888877777665


Q ss_pred             CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       317 ~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .+..    +.|+|++. +|++++.|++|+|||+++++.+..+.. ...|.+++|+|++ +|++++.|+.|++||..
T Consensus       250 ~v~~----~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          250 WVLN----VAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CEEE----EEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ceEE----EEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            4333    34699998 899999999999999999998888765 6789999999999 99999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=300.75  Aligned_cols=282  Identities=17%  Similarity=0.138  Sum_probs=212.0

Q ss_pred             cccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEE
Q 016134           77 SYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLH  156 (394)
Q Consensus        77 ~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~  156 (394)
                      ++++  ++..++++| |.++|+||.....+...... ...........+...|.+++ |++++. +++++.    |++|+
T Consensus        37 ~fs~--dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~s~d~~-l~~~s~----dg~v~  106 (344)
T 4gqb_B           37 RYRS--DGALLLGAS-SLSGRCWAGSLWLFKDPCAA-PNEGFCSAGVQTEAGVADLT-WVGERG-ILVASD----SGAVE  106 (344)
T ss_dssp             EECT--TSCEEEEEE-CCSSSCCCEEEEEESSGGGT-TCGGGCSEEEEESSCEEEEE-EETTTE-EEEEET----TSEEE
T ss_pred             EECC--CCCEEEEEe-CCceEEeeceeeeecccccc-CCcceeeeeeccCCCEEEEE-EeCCCe-EEEEEC----CCEEE
Confidence            4444  677777666 88999998543322111100 00000001112334688888 999864 444444    45999


Q ss_pred             EEEcCCCce---EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          157 SWFCGEGLT---MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       157 iWd~~~~~~---~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      |||+.++..   ....+.+|.+.|++|+|+|++++|++|+.|++  |||+++++.+.                     ..
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~---------------------~~  165 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS---------------------SY  165 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------------EE
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------EE
Confidence            999987632   23445699999999999999999999999999  69999988763                     22


Q ss_pred             CCCCCCEEEEEec--C-CeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeC
Q 016134          232 DGHTRPVTCLAVG--R-SRLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW---DQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~  303 (394)
                      .+|...|.+++|+  + .+|++++.|++|+|||+++++++..+.  .|...+.+++|+   +.+|++++.|++|++||++
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            3778888888886  3 578999999999999999999888875  355678999997   5689999999999999999


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGA  381 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~D  381 (394)
                      +++.+..+..|...+..+    .|+|++..+|++++.|++|+|||+.+++......|...|++++|+|++  +|++++.|
T Consensus       246 ~~~~~~~~~~h~~~v~~v----~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          246 STSCVLSSAVHSQCVTGL----VFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             C--CCEEEECCSSCEEEE----EECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCCEEEE----EEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence            999988888877554333    469998668999999999999999998776655567889999999998  78899999


Q ss_pred             CeEEEEeCCCCC
Q 016134          382 GMLGVWKLLAKP  393 (394)
Q Consensus       382 g~I~vWd~~~~~  393 (394)
                      ++|++|++.+++
T Consensus       322 ~~v~~w~v~~~~  333 (344)
T 4gqb_B          322 HQVVHHVVPTEP  333 (344)
T ss_dssp             SCEEEEECCC--
T ss_pred             CeEEEEECCCCC
Confidence            999999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-36  Score=282.77  Aligned_cols=259  Identities=16%  Similarity=0.209  Sum_probs=226.3

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|.++. |+|++.++++++.+|    +|+|||..++ +.+..+..|...|.+++|+|++++|++++.|+.  +
T Consensus        50 ~l~gH~~~v~~~~-~s~d~~~l~s~s~Dg----~v~iWd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           50 TLRGHLAKIYAMH-WGTDSRLLLSASQDG----KLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             EECCCSSCEEEEE-ECTTSSEEEEEETTT----EEEEEETTTC-CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             eecCCCCceEEEE-ECCCCCEEEEEeCCC----cEEEEECCCC-CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            4678999999999 999999998877666    9999999887 678889999999999999999999999999998  6


Q ss_pred             eecCCCc----E-EEecCCCCcEEEEEEcCC-EEEEEecC------------------CCCCCEEEEEec--CCeEEEEe
Q 016134          199 WNIESSA----E-FSLDGPVGEVYSMVVANE-MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       199 Wd~~~~~----~-~~~~~~~~~v~~l~~~~~-~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs  252 (394)
                      |++.+.+    . ..+.+|.+.|.++.|.++ .+++++.|                  +|...|.+++|+  +.+|++|+
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            9998753    1 256789999999999887 77777766                  699999999997  67899999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC
Q 016134          253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .|++|++||+++++++.++.+|...|.+++|+  +++|++++.|++|++||++..+.+..+........+.  .+.|+|+
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~--~~~~s~~  281 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT--SVSFSKS  281 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE--EEEECTT
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE--EEEECCC
Confidence            99999999999999999999999999999998  7899999999999999999877666554322222333  3457999


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          331 GKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       331 g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      ++ +|++|+.|+.|++||+.+++.+..+.. ...|.+++|+|++ +|++|+.|+.|+|||
T Consensus       282 g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          282 GR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99 999999999999999999888877764 6789999999999 999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.4e-37  Score=290.62  Aligned_cols=270  Identities=17%  Similarity=0.205  Sum_probs=223.3

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .+|++  ++..|+|||.|+++++||..++....            ....+...|.+++ ++|++.+++++..++    .+
T Consensus        70 ~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~------------~~~~~~~~v~~~~-~sp~g~~lasg~~d~----~i  130 (354)
T 2pbi_B           70 MDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEH------------AVTMPCTWVMACA-YAPSGCAIACGGLDN----KC  130 (354)
T ss_dssp             EEECT--TSSEEEEEETTSEEEEEETTTCCEEE------------EEECSSSCCCEEE-ECTTSSEEEEESTTS----EE
T ss_pred             EEECC--CCCEEEEEeCCCeEEEEECCCCCcce------------EEecCCCCEEEEE-ECCCCCEEEEeeCCC----CE
Confidence            34455  77889999999999999988766432            2234555788888 999999988766655    99


Q ss_pred             EEEEcCCC-----ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          156 HSWFCGEG-----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       156 ~iWd~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      ++|++...     ......+.+|...|.+++|+|++..|++++.|++  +||+++++.+..                   
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~-------------------  191 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS-------------------  191 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE-------------------
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE-------------------
Confidence            99998532     2346677899999999999999999999999999  699999887531                   


Q ss_pred             EecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134          229 GAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~  302 (394)
                        ..+|...|.+++|.    +++|++|+.|++|++||+++++++..+..|...|.+++|+  +.+|++++.|++|++||+
T Consensus       192 --~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~  269 (354)
T 2pbi_B          192 --FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL  269 (354)
T ss_dssp             --EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             --EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence              12677777777774    4689999999999999999999999999999999999998  789999999999999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeC
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      +..+.+..+..+.....+.  .+.|+|++. +|++++.|++|+|||+.+++.+..+.. ...|++++|+|++ +|++|+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~--~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          270 RADREVAIYSKESIIFGAS--SVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             TTTEEEEEECCTTCCSCEE--EEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCCcEEEEEcCCCccccee--EEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence            9877665554333222333  345799999 999999999999999999988877754 7789999999999 9999999


Q ss_pred             CCeEEEEe
Q 016134          381 AGMLGVWK  388 (394)
Q Consensus       381 Dg~I~vWd  388 (394)
                      |+.|+||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.1e-36  Score=280.39  Aligned_cols=272  Identities=19%  Similarity=0.285  Sum_probs=223.7

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ..++++  ++..+++++.|+++++||++++....            ...+|...|..+. +++++.++++++.++    .
T Consensus        18 ~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~------------~~~~~~~~v~~~~-~~~~~~~l~s~s~d~----~   78 (304)
T 2ynn_A           18 GIDFHP--TEPWVLTTLYSGRVELWNYETQVEVR------------SIQVTETPVRAGK-FIARKNWIIVGSDDF----R   78 (304)
T ss_dssp             EEEECS--SSSEEEEEETTSEEEEEETTTTEEEE------------EEECCSSCEEEEE-EEGGGTEEEEEETTS----E
T ss_pred             EEEECC--CCCEEEEEcCCCcEEEEECCCCceeE------------EeeccCCcEEEEE-EeCCCCEEEEECCCC----E
Confidence            344555  77889999999999999999876432            3446677889998 999999998777665    9


Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                      |++||+.++ +.+..+.+|.+.|++++|+|++++|++|+.|++  +||++++.....                    ...
T Consensus        79 i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--------------------~~~  137 (304)
T 2ynn_A           79 IRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ--------------------TFE  137 (304)
T ss_dssp             EEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE--------------------EEC
T ss_pred             EEEEECCCC-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh--------------------hhc
Confidence            999999988 778899999999999999999999999999999  699987754321                    223


Q ss_pred             CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCC
Q 016134          233 GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       233 ~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~  304 (394)
                      +|...|.+++|+   +.+|++|+.|++|++||+++.++...+. .|...+..+.+.    +.+|++++.|++|++||+++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            778888888886   3689999999999999999887766664 466788888886    56999999999999999999


Q ss_pred             CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC---EEEEEeC
Q 016134          305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK---LFFTGDG  380 (394)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~---~l~tgs~  380 (394)
                      ++++..+..|......+    .|+|++. +|++++.|++|+|||+.+++.+..+.. ...+.+++|+|++   ++++|+.
T Consensus       218 ~~~~~~~~~h~~~v~~~----~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFA----VFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             TEEEEEEECCSSCEEEE----EECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred             CccceeeCCCCCCEEEE----EECCCCC-EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence            99888888776544333    4699998 999999999999999999998888865 5679999999987   4777765


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      || +.+|++..+
T Consensus       293 ~g-~~~~~~~~~  303 (304)
T 2ynn_A          293 NG-FTVLSLGND  303 (304)
T ss_dssp             TE-EEEEECC--
T ss_pred             Cc-eEEEEeccC
Confidence            54 778887654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=285.91  Aligned_cols=281  Identities=20%  Similarity=0.314  Sum_probs=220.0

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ..+|++  ++..++++|.|++|+|||++++......         ....||...|.+++ |+|++.++++++.++    +
T Consensus        21 ~l~~sp--~g~~las~~~D~~i~iw~~~~~~~~~~~---------~~~~~h~~~v~~~~-~sp~g~~l~s~s~D~----~   84 (345)
T 3fm0_A           21 FLAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKS---------VLSEGHQRTVRKVA-WSPCGNYLASASFDA----T   84 (345)
T ss_dssp             EEEECT--TSSCEEEEETTSCEEEEEEETTEEEEEE---------EECSSCSSCEEEEE-ECTTSSEEEEEETTS----C
T ss_pred             EEEECC--CCCEEEEEcCCCeEEEEEcCCCcceeee---------eeccccCCcEEEEE-ECCCCCEEEEEECCC----c
Confidence            345666  8889999999999999999876532111         13468889999999 999999999877766    9


Q ss_pred             EEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          155 LHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       155 i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      |++||..++ .+.+..+.+|...|.+++|+|++++|++++.|+.  +||+.++.....                  ....
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------------------~~~~  146 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC------------------VSVL  146 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE------------------EEEE
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE------------------EEEe
Confidence            999998765 3578899999999999999999999999999999  699987643211                  0122


Q ss_pred             CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~  305 (394)
                      .+|...|.+++|+  +.+|++++.|++|++||+++++  +..++.+|...|.+++|+  +++|++++.|++|++||+...
T Consensus       147 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred             cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence            3788888899987  6789999999999999998775  557889999999999998  789999999999999997533


Q ss_pred             ce---------------eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc--------eeEEE--ec
Q 016134          306 GN---------------LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM--------ERGRI--FS  360 (394)
Q Consensus       306 ~~---------------~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--------~~~~~--~~  360 (394)
                      ..               +..+... ....+.  .+.|+|++. +|++++.|+.|++|+.....        .....  .+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~--~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSGF-HSRTIY--DIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECSS-CSSCEE--EEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             CCCccceeeccCCccceeEEecCC-CCCcEE--EEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            21               1111111 112233  345799998 89999999999999987542        11122  13


Q ss_pred             CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCCC
Q 016134          361 KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       361 ~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ...|++++|+|++  +|++++.||.|++|++.++.
T Consensus       303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            5679999999986  89999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.1e-36  Score=303.56  Aligned_cols=307  Identities=11%  Similarity=0.082  Sum_probs=231.8

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCC------CCCCCCCCCc----------------------------ccccc
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGY------TGPKNSSSAS----------------------------STVSD  121 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~------~~~~~s~~~~----------------------------~~~~~  121 (394)
                      .++++  ++..+++||.|++|+|||++++..      ..|.....+.                            .....
T Consensus        65 ~~~sp--dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~  142 (611)
T 1nr0_A           65 AKTSP--SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN  142 (611)
T ss_dssp             EEECT--TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             EEECC--CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcce
Confidence            44555  788999999999999999975432      1222211110                            00112


Q ss_pred             CCCCccceeeeccccccccc-cCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          122 ESGDKSTSKKTTLKNVCCHW-LLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~-~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ..||...|.+++ |+|.+.+ +++++.++    +|++||..+. +++.++.+|...|++++|+|++++|++++.|++  |
T Consensus       143 l~gh~~~v~~v~-f~p~~~~~l~s~s~D~----~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          143 LTGQARAMNSVD-FKPSRPFRIISGSDDN----TVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCCCSSCEEEEE-ECSSSSCEEEEEETTS----CEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ecCCCCCceEEE-ECCCCCeEEEEEeCCC----eEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            457888899998 9998764 66555554    9999998776 888999999999999999999999999999999  6


Q ss_pred             eecCCCcEEEec--------CCCCcEEEEEEcCC--EEEEEecCC---------------------CCCCEEEEEecCCe
Q 016134          199 WNIESSAEFSLD--------GPVGEVYSMVVANE--MLFAGAQDG---------------------HTRPVTCLAVGRSR  247 (394)
Q Consensus       199 Wd~~~~~~~~~~--------~~~~~v~~l~~~~~--~l~~~~~~~---------------------h~~~V~~l~~~~~~  247 (394)
                      ||+.+++.....        +|.+.|.+++|+|+  .+++++.|+                     +...+..+.|.++.
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            999998877432        68999999999998  788888771                     12234556667778


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee-cccC--------
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY-THKE--------  316 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~--------  316 (394)
                      +++++.|+.|++||.+++++...+.+|...|++++|+  +++|++++.|++|++||+.+++....+. .|..        
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT  376 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence            8888888888888888877777788888888888887  6788888888888888877654322210 0000        


Q ss_pred             ----------------------------------------------C-----------------------cceEEEEeeE
Q 016134          317 ----------------------------------------------D-----------------------NGVLALGGLN  327 (394)
Q Consensus       317 ----------------------------------------------~-----------------------~~~~~~~~~~  327 (394)
                                                                    .                       ......++.|
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~  456 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL  456 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence                                                          0                       0000124568


Q ss_pred             CCCCCcEEEEEeCCCeEEEEECCCCce--eEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          328 DPDGKPVLICACNDNTVHLYELPSFME--RGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       328 s~~g~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +|+++ +|++|+.|++|+|||+.....  .....+...|++++|+|++ +|++++.|++|++|++.+
T Consensus       457 spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          457 SNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             CTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             eCCCC-EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            99999 999999999999999987643  2334457789999999999 999999999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-35  Score=300.53  Aligned_cols=292  Identities=13%  Similarity=0.119  Sum_probs=240.7

Q ss_pred             cccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEE
Q 016134           77 SYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLH  156 (394)
Q Consensus        77 ~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~  156 (394)
                      ++++  ++..|++++ ++++++||++++....            ...||...|.+++ |+|++.++|+++.++    +|+
T Consensus        25 ~~sp--dg~~l~~~~-~~~v~l~~~~~~~~~~------------~~~~h~~~v~~~~-~spdg~~lasg~~d~----~v~   84 (611)
T 1nr0_A           25 GNTP--AGDKIQYCN-GTSVYTVPVGSLTDTE------------IYTEHSHQTTVAK-TSPSGYYCASGDVHG----NVR   84 (611)
T ss_dssp             EECT--TSSEEEEEE-TTEEEEEETTCSSCCE------------EECCCSSCEEEEE-ECTTSSEEEEEETTS----EEE
T ss_pred             eeCC--CCCEEEeCC-CCEEEEecCCCcccCe------------EecCCCCceEEEE-ECCCCcEEEEEeCCC----CEE
Confidence            3444  677888877 5699999998766432            4678888999999 999999999888776    999


Q ss_pred             EEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCC----ceeecCCCcEE-EecCCCCcEEEEEEcCC---EEE
Q 016134          157 SWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG----TAWNIESSAEF-SLDGPVGEVYSMVVANE---MLF  227 (394)
Q Consensus       157 iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg----~vWd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~  227 (394)
                      |||+.++ .....++.+|.+.|.+++|+|++++|++++.+.    .||.++.++.. .+.+|...|.+++|+|+   .++
T Consensus        85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEE
Confidence            9998643 345678899999999999999999999998764    45555555544 57889999999999997   588


Q ss_pred             EEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-------CCCCCcEE
Q 016134          228 AGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-------DHTDAPMS  280 (394)
Q Consensus       228 ~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-------~h~~~v~~  280 (394)
                      +++.|                  +|...|.+++|+  +++|++++.|++|+|||+.+++++..+.       +|...|.+
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~  244 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG  244 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred             EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE
Confidence            88766                  799999999998  6799999999999999999999988884       79999999


Q ss_pred             EEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134          281 LLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI  358 (394)
Q Consensus       281 l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~  358 (394)
                      ++|+  +++|++++.|++|++||+++++.+..+..... .....+...|  ++. .|++++.|+.|++||...++....+
T Consensus       245 v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~l~s~s~d~~i~~~~~~~~~~~~~~  320 (611)
T 1nr0_A          245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-IEDQQLGIIW--TKQ-ALVSISANGFINFVNPELGSIDQVR  320 (611)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-GGGCEEEEEE--CSS-CEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC-ccceeEEEEE--cCC-EEEEEeCCCcEEEEeCCCCCcceEE
Confidence            9998  78999999999999999998887776654322 1112222334  455 7899999999999999988766555


Q ss_pred             ec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          359 FS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       359 ~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .. ...|++++|+|++ +|++++.|+.|++||+.+.
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            43 6789999999999 9999999999999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-36  Score=287.16  Aligned_cols=284  Identities=14%  Similarity=0.131  Sum_probs=211.8

Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCC--CCeEEEEEcCCCc-
Q 016134           88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDE--CRFLHSWFCGEGL-  164 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~--~~~i~iWd~~~~~-  164 (394)
                      ..++++...+.|++....                ..+|.+.|.+++ |+|++.+|++++.+...  |+.|++|+..++. 
T Consensus        20 ~~~~g~~~~~~w~~p~~~----------------p~~H~~~V~~v~-fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~   82 (357)
T 4g56_B           20 FQSNGSSKGSAWGRPVTA----------------PACMEVQIGAVR-YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP   82 (357)
T ss_dssp             ------------------------------------CCCSEEEEEE-ECSSSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred             EecCCCccccccCCCCCC----------------cccccCCEEEEE-ECCCCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence            344667778889876433                235677999999 99999999988765432  6789999986652 


Q ss_pred             --eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-----EecCCCCcEEEEEEcCC--EEEEEecC-
Q 016134          165 --TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-----SLDGPVGEVYSMVVANE--MLFAGAQD-  232 (394)
Q Consensus       165 --~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~~-  232 (394)
                        .......+|...|++++|+|++. +++++.|++  |||+.+++..     ...+|...|.+++|+|+  .+++++.+ 
T Consensus        83 ~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg  161 (357)
T 4g56_B           83 NESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF  161 (357)
T ss_dssp             CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence              23344567999999999999875 556788888  6999887754     34578999999999998  88888877 


Q ss_pred             -----------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc---CCE
Q 016134          233 -----------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW---DQF  287 (394)
Q Consensus       233 -----------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~  287 (394)
                                       +|...|.+++|+   ..++++++.|++|+|||+++++++..+.  .|...+.+++|+   +.+
T Consensus       162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  241 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT  241 (357)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred             eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence                             799999999997   3579999999999999999988766553  467789999997   568


Q ss_pred             EEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEE
Q 016134          288 LLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI  367 (394)
Q Consensus       288 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l  367 (394)
                      |++++.|+.|++||+++++.+..+..+...+..+    .|+|++..+|++++.|++|+|||+++++.+..+.+...|++|
T Consensus       242 la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l----~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~v  317 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL----AYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV  317 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE----EECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEE
T ss_pred             EEEeecccceeEEECCCCcEeEEEeccceeEEEE----EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEE
Confidence            9999999999999999998888887776544333    468988668999999999999999999888777778899999


Q ss_pred             EECC-CC-EEEEEeCCCeEEEEeCCCCC
Q 016134          368 EIGP-DK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       368 ~~sp-~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +|+| ++ +|++++.|++|++|++.++.
T Consensus       318 afsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          318 AWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            9998 66 99999999999999997754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.1e-36  Score=289.17  Aligned_cols=281  Identities=19%  Similarity=0.217  Sum_probs=233.7

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG  172 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~  172 (394)
                      ++++..|+.....+.            ....||...|.++. |+|++.++++++.++    +|+|||..++ +....+.+
T Consensus        45 ~~~~~~~~~~~~~~~------------~~l~gH~~~V~~~~-~sp~~~~l~s~s~D~----~v~iWd~~~~-~~~~~~~~  106 (380)
T 3iz6_a           45 GRTAVSFNPTDLVCC------------RTLQGHSGKVYSLD-WTPEKNWIVSASQDG----RLIVWNALTS-QKTHAIKL  106 (380)
T ss_dssp             GGGCCCCCCCCCEEE------------EEECCCSSCEEEEE-ECTTSSCEEEEETTS----EEEEEETTTT-EEEEEEEC
T ss_pred             cccccccccceeEEe------------ecccccccEEEEEE-EcCCCCEEEEEeCCC----eEEEEECCCC-ccceEEec
Confidence            455556666544432            14679999999999 999999998877766    9999999887 78889999


Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc--------EEEecCCCCcEEEEEEcCC---EEEEEecC-------
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA--------EFSLDGPVGEVYSMVVANE---MLFAGAQD-------  232 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~--------~~~~~~~~~~v~~l~~~~~---~l~~~~~~-------  232 (394)
                      |...|.+++|+|++++|++|+.|+.  |||+.+..        ...+.+|.+.|.++.|.++   .+++++.|       
T Consensus       107 h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd  186 (380)
T 3iz6_a          107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD  186 (380)
T ss_dssp             CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEE
Confidence            9999999999999999999999999  69987532        1246688889999999875   68887765       


Q ss_pred             ----------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC-CCceeEEEcCCCCCcEEEEEc--CCEEEE
Q 016134          233 ----------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD-TLEPVMTLNDHTDAPMSLLCW--DQFLLS  290 (394)
Q Consensus       233 ----------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s  290 (394)
                                      +|...|.++.|+   +++|++|+.|++|++||++ ..+++..+.+|...|.+++|+  +++|++
T Consensus       187 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence                            578899999995   6799999999999999998 457888999999999999998  789999


Q ss_pred             EeCCCcEEEEEeCCCceeeEeecccCCc---ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-----cCC
Q 016134          291 CSLDHTIKVWFATGRGNLEAAYTHKEDN---GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-----SKH  362 (394)
Q Consensus       291 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~~  362 (394)
                      ++.|++|++||+++++.+..+..+....   ......+.|+|++. +|++|+.|+.|++||+..++.+..+.     +..
T Consensus       267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~  345 (380)
T 3iz6_a          267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG  345 (380)
T ss_dssp             ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred             EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence            9999999999999988877665433211   01112335799999 99999999999999999988877763     366


Q ss_pred             cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .|++++|+|++ +|++|+.|+.|++|++...
T Consensus       346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            79999999999 9999999999999999764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-35  Score=272.08  Aligned_cols=243  Identities=20%  Similarity=0.256  Sum_probs=205.6

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|.+++ |+|++.++++++.+|    .|++||+.++ +.+..+..|..+|.+++|+|++++|++|+.|++  +
T Consensus         8 ~~~~h~~~V~~~~-fsp~~~~l~s~~~dg----~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            8 TFSNRSDRVKGID-FHPTEPWVLTTLYSG----RVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             EEEEECSCEEEEE-ECSSSSEEEEEETTS----EEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eecCCCCceEEEE-ECCCCCEEEEEcCCC----cEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            3457888999999 999999999888776    9999999887 788999999999999999999999999999999  6


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCC
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL-EPVMTLNDHT  275 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~  275 (394)
                      ||+++++.+.                     ...+|...|.+++|+  +.+|++|+.|++|++||++++ .+...+.+|.
T Consensus        82 wd~~~~~~~~---------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~  140 (304)
T 2ynn_A           82 FNYNTGEKVV---------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (304)
T ss_dssp             EETTTCCEEE---------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred             EECCCCcEEE---------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence            9999988753                     112677788888887  678999999999999999887 4567789999


Q ss_pred             CCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          276 DAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       276 ~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      ..|.+++|+   +.+|++++.|++|++||++.......+..... ..+..+.+...+++. +|++++.|++|+|||++++
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCT-TCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTT
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCc-CcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCC
Confidence            999999998   46999999999999999987766655543322 233333333345777 9999999999999999999


Q ss_pred             ceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          353 MERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.+..+.. ...|.+++|+|++ +|++++.||.|++||+.+.
T Consensus       219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            88888775 6789999999999 9999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.6e-35  Score=269.77  Aligned_cols=272  Identities=20%  Similarity=0.317  Sum_probs=227.1

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .+|++  ++..+++++.|+++++|++.++.+..            ...+|...|.++. |+|++.++++++.++    .|
T Consensus        29 ~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~------------~~~~h~~~v~~~~-~~~~~~~l~s~~~d~----~i   89 (312)
T 4ery_A           29 VKFSP--NGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGISDVA-WSSDSNLLVSASDDK----TL   89 (312)
T ss_dssp             EEECT--TSSEEEEEETTSCEEEEETTTCCEEE------------EECCCSSCEEEEE-ECTTSSEEEEEETTS----EE
T ss_pred             EEECC--CCCEEEEeeCCCeEEEEeCCCcccch------------hhccCCCceEEEE-EcCCCCEEEEECCCC----EE
Confidence            44555  77789999999999999998776532            3467888899999 999999998777665    99


Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCC
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG  233 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~  233 (394)
                      ++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.  +||+++++.+..                     ...
T Consensus        90 ~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------------~~~  147 (312)
T 4ery_A           90 KIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT---------------------LPA  147 (312)
T ss_dssp             EEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE---------------------ECC
T ss_pred             EEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE---------------------ecC
Confidence            99999887 788899999999999999999999999999999  699998876531                     125


Q ss_pred             CCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee
Q 016134          234 HTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       234 h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                      |...|.+++|+  +++|++++.|+.|++||+++++++..+. .+...+..++|+  +++|++++.|+.|++||+++++.+
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL  227 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            67778888886  6789999999999999999999888774 466778899998  789999999999999999999888


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEe--CCCeE
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGD--GAGML  384 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs--~Dg~I  384 (394)
                      ..+..+.......... ...+++. +|++|+.|+.|++||+.+++.+..+.. ...|.+++|+|++ +|++++  .|+.|
T Consensus       228 ~~~~~~~~~~~~~~~~-~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i  305 (312)
T 4ery_A          228 KTYTGHKNEKYCIFAN-FSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI  305 (312)
T ss_dssp             EEECSSCCSSSCCCEE-EECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred             EEEEecCCceEEEEEE-EEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccE
Confidence            8877766543333221 1235566 999999999999999999988888765 6779999999999 888887  69999


Q ss_pred             EEEeCC
Q 016134          385 GVWKLL  390 (394)
Q Consensus       385 ~vWd~~  390 (394)
                      ++|+.+
T Consensus       306 ~~W~~d  311 (312)
T 4ery_A          306 KLWKSD  311 (312)
T ss_dssp             EEEECC
T ss_pred             EEecCC
Confidence            999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-34  Score=268.93  Aligned_cols=260  Identities=17%  Similarity=0.289  Sum_probs=221.2

Q ss_pred             cCCCCccceeeeccccccc-cccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134          121 DESGDKSTSKKTTLKNVCC-HWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD  195 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D  195 (394)
                      ...||...|.+++ ++|.. .++++++.++    +|++|++...    ..++..+.+|...|.+++|+|++++|++++.|
T Consensus        12 ~l~gH~~~V~~l~-~~~~~~~~l~s~s~D~----~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A           12 TLEGHNGWVTSLA-TSAGQPNLLLSASRDK----TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EECCCSSCEEEEE-ECSSCTTEEEEEETTS----EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEccccceEEEEE-ccCCCccEEEEecCCc----cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            4678999999999 88854 6777666655    9999998532    24678899999999999999999999999999


Q ss_pred             Cc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-----------------CCCCCEEEEEecC--------
Q 016134          196 GT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-----------------GHTRPVTCLAVGR--------  245 (394)
Q Consensus       196 g~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-----------------~h~~~V~~l~~~~--------  245 (394)
                      ++  |||+++++.+ .+.+|...|.+++|+++  .+++++.|                 +|...|.++.+.+        
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------C
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            99  6999999876 67889999999999987  78888877                 6889999999963        


Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEE
Q 016134          246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL  323 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  323 (394)
                      ..|++++.|++|++||+++.+....+.+|...|.+++|+  +++|++++.|++|++||+++.+.+..+..+   ..+.  
T Consensus       167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~--  241 (319)
T 3frx_A          167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVF--  241 (319)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SCEE--
T ss_pred             cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CcEE--
Confidence            379999999999999999999999999999999999998  789999999999999999998877766543   2333  


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+.|+|++. +|++++. ..+++|++.....+..+..         ...+.+++|+|++ +|++|+.|+.|+|||+.+.
T Consensus       242 ~~~~sp~~~-~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          242 SLAFSPNRY-WLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEECSSSS-EEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEcCCCC-EEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            345799998 7877764 5699999998766665532         3468999999999 9999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-34  Score=282.48  Aligned_cols=285  Identities=25%  Similarity=0.332  Sum_probs=244.4

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..+++|+.|+++++||++++....            ...+|...|.++. ++  +.++++++.+|    +|++||+.+
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~~~~~------------~~~~h~~~v~~~~-~~--~~~l~s~~~dg----~i~vwd~~~  188 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTGKCLR------------TLVGHTGGVWSSQ-MR--DNIIISGSTDR----TLKVWNAET  188 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEE------------ECCCCSSCEEEEE-EE--TTEEEEEETTS----CEEEEETTT
T ss_pred             cCCEEEEEECCCcEEEEECCCCcEEE------------EEcCCCCCEEEEE-ec--CCEEEEEeCCC----eEEEEECCc
Confidence            67789999999999999999877542            3557888898888 65  45666555554    999999988


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC-------
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD-------  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~-------  232 (394)
                      + +.+..+.+|...|.+++|+  +++|++++.|+.  +||+++++.+ .+..|...|.++.+....+++++.+       
T Consensus       189 ~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          189 G-ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             T-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             C-cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEE
Confidence            7 8889999999999999995  678999999999  6999998877 6678999999999977788888776       


Q ss_pred             -----------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEE
Q 016134          233 -----------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWF  301 (394)
Q Consensus       233 -----------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd  301 (394)
                                 +|...|.++.|++.++++++.|+.|++||+++++++..+.+|...+.++.+.+++|++++.|+.|++||
T Consensus       266 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD  345 (445)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEE
Confidence                       689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeEeeccc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe------cCCcEEEEEECCCC-
Q 016134          302 ATGRGNLEAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF------SKHEVRVIEIGPDK-  373 (394)
Q Consensus       302 ~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~~~v~~l~~sp~~-  373 (394)
                      +++++.+..+..+. ....+.++  .++  +. +|++++.||.|++||+.+++.+..+.      +...|++++|+|++ 
T Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~--~~~--~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          346 IKTGQCLQTLQGPNKHQSAVTCL--QFN--KN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             TTTCCEEEEECSTTSCSSCEEEE--EEC--SS-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             CCCCcEEEEEccCCCCCCCEEEE--EEC--CC-EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence            99988888776533 22333333  344  45 89999999999999999999888872      36679999999999 


Q ss_pred             EEEEEeCCCe----EEEEeCCCCCC
Q 016134          374 LFFTGDGAGM----LGVWKLLAKPS  394 (394)
Q Consensus       374 ~l~tgs~Dg~----I~vWd~~~~~~  394 (394)
                      +|++++.||.    |.+||+..+++
T Consensus       421 ~la~~~~dg~~~~~l~v~df~~~~~  445 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLDFDVDMK  445 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEECCCCC-
T ss_pred             EEEEcccCCCCccEEEEEECCCCCC
Confidence            9999999998    99999998775

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.3e-35  Score=276.91  Aligned_cols=282  Identities=14%  Similarity=0.182  Sum_probs=209.8

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..++|||.|++|++||+.++......     ........||...|.+++ ++|++.++++++.++    +|++||+.+
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----~~~~~~l~~h~~~V~~~~-~~~~~~~l~s~s~D~----~v~lwd~~~  107 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYF-----GIPHKALTGHNHFVSDLA-LSQENCFAISSSWDK----TLRLWDLRT  107 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBS-----EEEEEEECCCSSCEEEEE-ECSSTTEEEEEETTS----EEEEEETTS
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCccccc-----ccccchhccCCCceEEEE-ECCCCCEEEEEcCCC----cEEEEECCC
Confidence            5667899999999999999865422100     011124578999999999 999999988776665    999999988


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEec---CCCCcEEEEEEcCCEEEEEecCCCCCC
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLD---GPVGEVYSMVVANEMLFAGAQDGHTRP  237 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~---~~~~~v~~l~~~~~~l~~~~~~~h~~~  237 (394)
                      + +.+..+.+|...|.+++|+|++++|++++.|++  +||+.........   .|...|.+++|+|+.        ..  
T Consensus       108 ~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~--  176 (343)
T 2xzm_R          108 G-TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM--------KS--  176 (343)
T ss_dssp             S-CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC--------CS--
T ss_pred             C-cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc--------cc--
Confidence            7 778899999999999999999999999999999  6999854443332   333444444443320        00  


Q ss_pred             EEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          238 VTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       238 V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      ...+...+.+|++++.|++|++||. +.+....+.+|...|.+++|+  +++|++++.|+.|++||++..........+.
T Consensus       177 ~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~  255 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG  255 (343)
T ss_dssp             CSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS
T ss_pred             ccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC
Confidence            0000001268999999999999994 567788899999999999998  7899999999999999995443332222222


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE--EEe------------cCCcEEEEEECCCC-EEEEEeC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG--RIF------------SKHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~--~~~------------~~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      .  .+.  .+.|+|++. +|+++ .|+.|++||+.+.+...  .+.            +...|.+++|+|++ +|++|+.
T Consensus       256 ~--~v~--~v~~sp~~~-~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  329 (343)
T 2xzm_R          256 S--TIN--QIAFNPKLQ-WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT  329 (343)
T ss_dssp             S--CEE--EEEECSSSC-EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred             C--cEE--EEEECCCCC-EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence            2  233  345799987 66654 57889999998765443  222            24569999999999 9999999


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      ||.|++|++.+.
T Consensus       330 Dg~v~~w~~~~g  341 (343)
T 2xzm_R          330 DGVIRTFSFETS  341 (343)
T ss_dssp             TSEEEEEEEEEE
T ss_pred             CceEEEEEEEcc
Confidence            999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-34  Score=290.78  Aligned_cols=278  Identities=21%  Similarity=0.294  Sum_probs=237.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..+++++.|+++++||.+.....             ...||...|..++ ++|++.++++++.++    .|++||...
T Consensus       273 d~~~l~~~~~d~~i~~w~~~~~~~~-------------~~~~h~~~v~~~~-~~~~~~~l~t~~~d~----~i~~w~~~~  334 (577)
T 2ymu_A          273 DGQTIASASDDKTVKLWNRNGQLLQ-------------TLTGHSSSVWGVA-FSPDGQTIASASDDK----TVKLWNRNG  334 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEE-------------EECCCSSCEEEEE-ECTTSSEEEEEETTS----CEEEEETTS
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcEEE-------------EEecCCCCeEEEE-ECCCCCEEEEEeCCC----eEEEEeCCC
Confidence            7778999999999999997643321             3567888999999 999999998776655    999999865


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD------  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~------  232 (394)
                        ..+..+.+|...|.+++|+|++++|++++.|+.  +||........+..|...|.+++|+|+  .+++++.+      
T Consensus       335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~  412 (577)
T 2ymu_A          335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  412 (577)
T ss_dssp             --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence              456788999999999999999999999999998  699765555578889999999999998  77777765      


Q ss_pred             -----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134          233 -----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTI  297 (394)
Q Consensus       233 -----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i  297 (394)
                                 +|...|++++|+  +.+|++++.|++|++||+ +++.+..+.+|...|.+++|+  +++|++++.|+.|
T Consensus       413 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i  491 (577)
T 2ymu_A          413 NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  491 (577)
T ss_dssp             CTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence                       689999999997  678999999999999996 578888999999999999998  7899999999999


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EE
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF  375 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l  375 (394)
                      ++||. +++.+..+..|...+..+    +|+|+++ +|++++.|+.|+|||. +++.+..+.. ...|++++|+||+ +|
T Consensus       492 ~iw~~-~~~~~~~~~~h~~~v~~l----~~s~dg~-~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l  564 (577)
T 2ymu_A          492 KLWNR-NGQLLQTLTGHSSSVRGV----AFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI  564 (577)
T ss_dssp             EEEET-TSCEEEEEECCSSCEEEE----EECTTSS-CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             EEEcC-CCCEEEEEeCCCCCEEEE----EEcCCCC-EEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            99995 567777777776544333    4699999 8999999999999996 4566666654 7789999999999 99


Q ss_pred             EEEeCCCeEEEEe
Q 016134          376 FTGDGAGMLGVWK  388 (394)
Q Consensus       376 ~tgs~Dg~I~vWd  388 (394)
                      +|++.|++|++||
T Consensus       565 ~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          565 ASASSDKTVKLWN  577 (577)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEeCCCEEEEeC
Confidence            9999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-34  Score=278.86  Aligned_cols=239  Identities=21%  Similarity=0.329  Sum_probs=209.9

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..||...|.++. |+|.+.++++++.+|    +|+|||+.++ +...++.+|.+.|++++|+|++++|++|+.|++  ||
T Consensus       104 l~gh~~~V~~~~-~~p~~~~l~s~s~Dg----~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          104 LSGHRSPVTRVI-FHPVFSVMVSASEDA----TIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             EECCSSCEEEEE-ECSSSSEEEEEESSS----CEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             ecccCCcEEEEE-EcCCCCEEEEEeCCC----eEEEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            458899999999 999999988777766    9999999887 778899999999999999999999999999999  69


Q ss_pred             ecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Q 016134          200 NIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA  277 (394)
Q Consensus       200 d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~  277 (394)
                      |+++++.+.                     ...+|...|.+++|+  +++|++|+.|++|++||+++++++.++.+|...
T Consensus       178 d~~~~~~~~---------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          178 DFQGFECIR---------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             ETTSSCEEE---------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             eCCCCceeE---------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence            999887653                     223677888888886  678999999999999999999999999999999


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC--------------------CCcEE
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD--------------------GKPVL  335 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------g~~~l  335 (394)
                      |.++.++  +.+|++++.|++|++||+++.+....+..|...+..+    .|+|+                    +. +|
T Consensus       237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l  311 (410)
T 1vyh_C          237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI----SWAPESSYSSISEATGSETKKSGKPGP-FL  311 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE----EECCSCGGGGGGGCCSCC-------CC-EE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE----EEcCcccccchhhhccccccccCCCCC-EE
Confidence            9999998  7899999999999999999988888777766544333    34665                    45 89


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          336 ICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       336 ~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++|+.|++|++||++++..+..+.. ...|++++|+|++ +|++++.|+.|++||+.+.
T Consensus       312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999999999988877764 6779999999999 9999999999999998754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-34  Score=278.53  Aligned_cols=283  Identities=20%  Similarity=0.294  Sum_probs=216.2

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCC----CCCCCC--CccccccCCCCccceeeeccccccccccCCCee
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTG----PKNSSS--ASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV  147 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~----~~~s~~--~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~  147 (394)
                      ...+|++  ++..+++|+ |+++++|+++++....    +.....  ..........+...|+++. |+|++.++++++.
T Consensus        68 ~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~s~dg~~l~s~~~  143 (393)
T 1erj_A           68 CCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC-FSPDGKFLATGAE  143 (393)
T ss_dssp             CEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE-ECTTSSEEEEEET
T ss_pred             EEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE-ECCCCCEEEEEcC
Confidence            3445666  788888876 7899999999876421    110000  0000001112334588999 9999999987776


Q ss_pred             cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          148 RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       148 ~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      ++    .|++||+.++ +.+..+.+|...|++++|+|++++|++++.|++  +||+++++.....               
T Consensus       144 d~----~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---------------  203 (393)
T 1erj_A          144 DR----LIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL---------------  203 (393)
T ss_dssp             TS----CEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------------
T ss_pred             CC----eEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE---------------
Confidence            65    9999999887 888999999999999999999999999999999  6999998765432               


Q ss_pred             EEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE-------cCCCCCcEEEEEc--CCEEEEEeC
Q 016134          226 LFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL-------NDHTDAPMSLLCW--DQFLLSCSL  293 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~h~~~v~~l~~~--~~~l~s~s~  293 (394)
                             .+...+.+++|+   +.+|++|+.|+.|++||+++++++..+       .+|...|.+++|+  +++|++++.
T Consensus       204 -------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          204 -------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             -------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             -------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence                   233456666664   578999999999999999999888777       5799999999998  789999999


Q ss_pred             CCcEEEEEeCCCce------------eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134          294 DHTIKVWFATGRGN------------LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-  360 (394)
Q Consensus       294 Dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-  360 (394)
                      |++|++||++....            ...+..|...  +.  .+.++|++. +|++++.|+.|++||+.+++.+..+.. 
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~--~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF--VL--SVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSC--EE--EEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCc--EE--EEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            99999999976432            2333334332  22  334689998 999999999999999999988877764 


Q ss_pred             CCcEEEEEECC------CC-EEEEEeCCCeEEEEeCCCC
Q 016134          361 KHEVRVIEIGP------DK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       361 ~~~v~~l~~sp------~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ...|.+++|++      ++ +|++|+.|+.|+||++...
T Consensus       352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            67899999986      56 9999999999999998653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=273.53  Aligned_cols=268  Identities=24%  Similarity=0.285  Sum_probs=198.9

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCcccccc-CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC--
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSD-ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE--  162 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~--  162 (394)
                      .+++||.|+++++||++++......         .. ..+|...|.+++ |+|.+.++++++.++    +|+|||...  
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~---------~~~~~~h~~~v~~v~-~sp~~~~las~s~D~----~v~iw~~~~~~   91 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLID---------VLDETAHKKAIRSVA-WRPHTSLLAAGSFDS----TVSIWAKEESA   91 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEE---------EECTTCCCSCEEEEE-ECTTSSEEEEEETTS----CEEEEEC----
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEE---------EEecCCccCCEEEEE-ECCCCCEEEEEeCCC----cEEEEEcccCc
Confidence            7899999999999999875432100         12 224888999999 999999998877666    999999853  


Q ss_pred             ----CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC-cEEEecCCCCcEEEEEEcCCEEEEEecCCCC
Q 016134          163 ----GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS-AEFSLDGPVGEVYSMVVANEMLFAGAQDGHT  235 (394)
Q Consensus       163 ----~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~-~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~  235 (394)
                          ..+++..+.+|...|.+++|+|++++|++|+.|++  |||+... ....                  ......+|.
T Consensus        92 ~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~------------------~~~~~~~h~  153 (330)
T 2hes_X           92 DRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE------------------CISVLQEHS  153 (330)
T ss_dssp             ---CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE------------------EEEEECCCS
T ss_pred             CccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE------------------EEEEeccCC
Confidence                23678889999999999999999999999999999  6999532 2110                  001223788


Q ss_pred             CCEEEEEec--CCeEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCc-
Q 016134          236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDTL--EPVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRG-  306 (394)
Q Consensus       236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~--~~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~-  306 (394)
                      ..|.+++|+  +.+|++++.|++|++||+.++  +++..+.+|...|.++.|+    +.+|++++.|++|++||++... 
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            888888887  678999999999999998776  6788999999999999998    2489999999999999987531 


Q ss_pred             -------eeeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc--eeEEEe--cCC-cEEEEEECC--
Q 016134          307 -------NLEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM--ERGRIF--SKH-EVRVIEIGP--  371 (394)
Q Consensus       307 -------~~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~--~~~~~~--~~~-~v~~l~~sp--  371 (394)
                             ....+.. |.  ..+.++  .|++++  +|++++.|+.|+|||..+++  ......  +.. .|.+++|+|  
T Consensus       234 ~~~~~~~~~~~~~~~h~--~~v~~v--~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~  307 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHK--RQVYNV--AWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN  307 (330)
T ss_dssp             TSCEEEEEEEECCSCCS--SCEEEE--EECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---
T ss_pred             cccceeEEeeecccccc--cceEEE--EEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCC
Confidence                   2222222 22  233333  457654  68999999999999998774  233332  233 799999999  


Q ss_pred             CC-EEEEEeCCCeEEEEeCCC
Q 016134          372 DK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       372 ~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ++ +|++|+.||.|+||+++.
T Consensus       308 ~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          308 GKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --CCEEEEETTSEEEEEEC--
T ss_pred             CceEEEEecCCCcEEEEEecc
Confidence            56 999999999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.7e-34  Score=285.02  Aligned_cols=285  Identities=21%  Similarity=0.313  Sum_probs=242.4

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .++++  ++..+++++.|+++++||.+....             ....+|...|.++. ++|++.+++++..++    .|
T Consensus       227 ~~~s~--dg~~l~~~~~d~~i~~w~~~~~~~-------------~~~~~~~~~v~~v~-~~~d~~~l~~~~~d~----~i  286 (577)
T 2ymu_A          227 VAFSP--DGQTIASASDDKTVKLWNRNGQLL-------------QTLTGHSSSVNGVA-FRPDGQTIASASDDK----TV  286 (577)
T ss_dssp             EEECT--TSSCEEEEETTSCEEEECTTSCEE-------------EEECCCSSCEEEEE-ECTTSSEEEEEETTS----CE
T ss_pred             EEECC--CCCEEEEEeCCCEEEEEeCCCCEE-------------EEEecCCCCEEEEE-EcCCCCEEEEEeCCC----EE
Confidence            34444  777899999999999999754322             13567788899999 999999988776655    89


Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEec
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQ  231 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~  231 (394)
                      ++||...  +.+..+.+|...|.+++|+|++++|++++.|+.  +||........+..+...+.+++|+|+  .++++..
T Consensus       287 ~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  364 (577)
T 2ymu_A          287 KLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD  364 (577)
T ss_dssp             EEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC
Confidence            9999754  677889999999999999999999999999998  699988877788899999999999998  7777776


Q ss_pred             C-----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEE
Q 016134          232 D-----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLS  290 (394)
Q Consensus       232 ~-----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s  290 (394)
                      +                 +|...|.+++|+  +++|++++.|+.|++||. +++.+..+.+|...|++++|+  +++|++
T Consensus       365 dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  443 (577)
T 2ymu_A          365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS  443 (577)
T ss_dssp             TSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence            5                 689999999997  678999999999999995 578889999999999999998  789999


Q ss_pred             EeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEE
Q 016134          291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEI  369 (394)
Q Consensus       291 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~  369 (394)
                      ++.|++|++||+ +++.+..+..|......    +.|+|+++ +|++++.|+.|+|||. +++.+..+.. ...|++++|
T Consensus       444 ~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~----~~~spd~~-~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~  516 (577)
T 2ymu_A          444 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRG----VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF  516 (577)
T ss_dssp             EETTSEEEEEET-TSCEEEEEECCSSCEEE----EEECTTSC-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE
T ss_pred             EcCCCEEEEEEC-CCCEEEEEcCCCCCEEE----EEEcCCCC-EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEE
Confidence            999999999996 45666777666654333    34699999 9999999999999996 4566666654 778999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEeCC
Q 016134          370 GPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       370 sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +|++ +|++++.|+.|++||+.
T Consensus       517 s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          517 SPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTT
T ss_pred             cCCCCEEEEEECcCEEEEEeCC
Confidence            9999 99999999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-33  Score=261.79  Aligned_cols=262  Identities=16%  Similarity=0.264  Sum_probs=217.6

Q ss_pred             cCCCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134          121 DESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD  195 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D  195 (394)
                      .++||...|++++ |+|. +.++++++.|+    +|+|||+.+.    ..+...+.+|...|.+++|+|++++|++++.|
T Consensus        33 tL~GH~~~V~~v~-~sp~~~~~l~S~s~D~----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           33 TLKGHNGWVTQIA-TTPQFPDMILSASRDK----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EECCCSSCEEEEE-ECTTCTTEEEEEETTS----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCccCCEEEEE-EeCCCCCEEEEEcCCC----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            4789999999999 9997 67888777665    9999998654    24678899999999999999999999999999


Q ss_pred             Cc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEec----CCe
Q 016134          196 GT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVG----RSR  247 (394)
Q Consensus       196 g~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~----~~~  247 (394)
                      +.  +|+....... ....+...+..+.+.++  .+++++.+                   +|...|..++|.    ..+
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            99  5998887766 45566677778888776  77777665                   688899999986    357


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEe
Q 016134          248 LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGG  325 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  325 (394)
                      +++++.|+.|++||+++++++..+.+|...|++++|+  +++|++++.|+.|++||+++.+.+..+..+.   .+.  ..
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~--~~  262 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN--AL  262 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE--EE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE--ee
Confidence            8999999999999999999999999999999999998  7899999999999999999988777665432   233  23


Q ss_pred             eECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe----------cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCCC
Q 016134          326 LNDPDGKPVLICACNDNTVHLYELPSFMERGRIF----------SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKPS  394 (394)
Q Consensus       326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~----------~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~~  394 (394)
                      .++|++.  +++++.|+.|+|||+++...+..+.          +...|++++|+|++ +|++|+.||.|+|||+.+..|
T Consensus       263 ~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          263 CFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             EECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             ecCCCCc--eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence            4688876  5556679999999999887766553          24579999999999 999999999999999988653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-35  Score=281.05  Aligned_cols=299  Identities=16%  Similarity=0.211  Sum_probs=244.7

Q ss_pred             CCCccccccccc-ccccC----------CCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccccc
Q 016134           74 SPPSYNRLKNNL-WVSSG----------SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWL  142 (394)
Q Consensus        74 ~~~~~~~~~~~~-~~~s~----------s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~  142 (394)
                      ...+|++  ++. .++++          +.|+++++||++++......          ...+|...|.++. |+|++.++
T Consensus        16 ~~~~~sp--~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~----------~~~~~~~~v~~~~-~s~~~~~l   82 (416)
T 2pm9_A           16 ATFAWSH--DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI----------ASLQVDSKFNDLD-WSHNNKII   82 (416)
T ss_dssp             CBCCBCS--SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS----------CCCCCSSCEEEEE-ECSSSSCE
T ss_pred             ceEeeCC--CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE----------EEEecCCceEEEE-ECCCCCeE
Confidence            4566666  655 67777          88999999999987643211          2345777899999 99999999


Q ss_pred             CCCeecCCCCCeEEEEEcCC---CceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCc------EE---
Q 016134          143 LGNCVRGDECRFLHSWFCGE---GLTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSA------EF---  207 (394)
Q Consensus       143 ~~~~~~g~~~~~i~iWd~~~---~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~------~~---  207 (394)
                      ++++.+|    .|++||+.+   +.+.+..+.+|...|++++|+|+ +++|++++.|+.  +||+.+++      ..   
T Consensus        83 ~~~~~dg----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  158 (416)
T 2pm9_A           83 AGALDNG----SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP  158 (416)
T ss_dssp             EEEESSS----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred             EEEccCC----eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence            8877666    999999976   34688999999999999999998 899999999999  69999876      22   


Q ss_pred             -EecCCCCcEEEEEEcCC---EEEEEecC------------------CC------CCCEEEEEecC---CeEEEEeCCC-
Q 016134          208 -SLDGPVGEVYSMVVANE---MLFAGAQD------------------GH------TRPVTCLAVGR---SRLCSGSMDN-  255 (394)
Q Consensus       208 -~~~~~~~~v~~l~~~~~---~l~~~~~~------------------~h------~~~V~~l~~~~---~~l~sgs~Dg-  255 (394)
                       ....+...|.+++|+++   .+++++.+                  .|      ...|.+++|++   .+|++++.|+ 
T Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  238 (416)
T 2pm9_A          159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN  238 (416)
T ss_dssp             CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred             ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence             23568889999999986   77777766                  22      78899999982   5899999999 


Q ss_pred             --eEEEEeCCCC-ceeEEEc-CCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC
Q 016134          256 --TIRVWELDTL-EPVMTLN-DHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       256 --~V~iwd~~~~-~~~~~~~-~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (394)
                        .|++||++++ +++..+. +|...|.+++|+   +.+|++++.|+.|++||+++++.+..+..|......++    |+
T Consensus       239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~----~s  314 (416)
T 2pm9_A          239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK----FA  314 (416)
T ss_dssp             SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE----EC
T ss_pred             CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE----EC
Confidence              9999999986 6777888 899999999996   67999999999999999999988888887776555444    59


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEe------------------------------------cCCcEEEEEECCC
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIF------------------------------------SKHEVRVIEIGPD  372 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~------------------------------------~~~~v~~l~~sp~  372 (394)
                      |++..+|++++.|+.|+|||+.+........                                    +...+.+++|+|+
T Consensus       315 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  394 (416)
T 2pm9_A          315 PEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG  394 (416)
T ss_dssp             TTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT
T ss_pred             CCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeC
Confidence            9984499999999999999998765322110                                    2345779999999


Q ss_pred             C-EEEEEeCCCeEEEEeCCCCC
Q 016134          373 K-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       373 ~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      | +|++++.|+.|+||++.+++
T Consensus       395 g~~la~~~~d~~v~~w~~~~~~  416 (416)
T 2pm9_A          395 GKLVQITPDGKGVSITNPKISG  416 (416)
T ss_dssp             TEEECBCTTSSCBCCBCCCCC-
T ss_pred             CeEEEEeCCCCeEEEEEeccCC
Confidence            9 99999999999999998864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-34  Score=274.61  Aligned_cols=301  Identities=14%  Similarity=0.169  Sum_probs=238.1

Q ss_pred             CCCccccccccc-ccccCCCCCccccccc----CCCCC------CCCCCCCCCccccccCCCCccceeeecccccccccc
Q 016134           74 SPPSYNRLKNNL-WVSSGSEDRIPHVRNR----ENPGY------TGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWL  142 (394)
Q Consensus        74 ~~~~~~~~~~~~-~~~s~s~d~~~~~w~~----~~~~~------~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~  142 (394)
                      ...+|++  ++. .+++++.|+++++|++    +++..      ......  .........+|...|.++. |+|++.++
T Consensus        49 ~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~-~s~~~~~l  123 (425)
T 1r5m_A           49 VSSTWNP--LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH--PFALSASSGKTTNQVTCLA-WSHDGNSI  123 (425)
T ss_dssp             SEEEECS--SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC--CCCCC------CBCEEEEE-ECTTSSEE
T ss_pred             EEEEECC--CCCcEEEEecCCceEEEEEEecccCCccccccccccccccc--cccccccccCCCCceEEEE-EcCCCCEE
Confidence            3455665  777 8999999999999999    76662      100000  0000001224677999999 99999999


Q ss_pred             CCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCc----
Q 016134          143 LGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGE----  215 (394)
Q Consensus       143 ~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~----  215 (394)
                      ++++.+|    .|++||. ++ +.+..+.+|...|.+++|+|++++|++++.|+.  +||+.+++.. .+..+...    
T Consensus       124 ~~~~~dg----~i~i~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          124 VTGVENG----ELRLWNK-TG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             EEEETTS----CEEEEET-TS-CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             EEEeCCC----eEEEEeC-CC-CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            8877666    8999993 33 678889999999999999999999999999998  6999998876 34444444    


Q ss_pred             -----------EEEEEEcCC-EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134          216 -----------VYSMVVANE-MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       216 -----------v~~l~~~~~-~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~  263 (394)
                                 +.++.|.++ .+++++.+                  .|...|.+++|+  +.+|++++.|+.|++||++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                       888888887 77776655                  688999999997  6789999999999999999


Q ss_pred             CCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC
Q 016134          264 TLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN  342 (394)
Q Consensus       264 ~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg  342 (394)
                      +++++..+..|...|.++.|+ ..+|++++.|+.|++||+++++.+..+..+......    +.|+|++. +|++++.|+
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~----~~~s~~~~-~l~~~~~dg  352 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA----GRISQDGQ-KYAVAFMDG  352 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEE----EEECTTSS-EEEEEETTS
T ss_pred             CCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEE----EEEcCCCC-EEEEEECCC
Confidence            999999999999999999999 339999999999999999998888777766544333    34699998 999999999


Q ss_pred             eEEEEECCCCc--------------------eeEEEecC--C-cEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          343 TVHLYELPSFM--------------------ERGRIFSK--H-EVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       343 ~I~iwd~~~~~--------------------~~~~~~~~--~-~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .|++||+.++.                    .+..+...  . .|++++|+|++ +|++++.||.|++|+++
T Consensus       353 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          353 QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999999877                    66666552  3 89999999999 99999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=267.61  Aligned_cols=242  Identities=16%  Similarity=0.139  Sum_probs=188.6

Q ss_pred             CccceeeeccccccccccCCCeecCCCCCeEEEEEcC----------CCceEEEEecccCCCeEEEEecCCCCEEEEEeC
Q 016134          125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG----------EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR  194 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~----------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~  194 (394)
                      +.+.|.+++ |+|++.++++++ ++    ++|+||..          ...........|...|.+++|+|++ .|++|+.
T Consensus        29 ~~~~v~~~~-fs~dG~~l~~~s-d~----~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           29 MERQLEAAR-YRSDGALLLGAS-SL----SGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD  101 (344)
T ss_dssp             CCSEEEEEE-ECTTSCEEEEEE-CC----SSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred             ccCCEEEEE-ECCCCCEEEEEe-CC----ceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence            445788998 999999998655 33    55666521          0111122233467889999999984 7889999


Q ss_pred             CCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEE
Q 016134          195 DGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMT  270 (394)
Q Consensus       195 Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~  270 (394)
                      ||+  |||+++++.....                 .....+|...|++++|+  +++|++|+.|++|+|||+++++++.+
T Consensus       102 dg~v~lWd~~~~~~~~~~-----------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~  164 (344)
T 4gqb_B          102 SGAVELWELDENETLIVS-----------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS  164 (344)
T ss_dssp             TSEEEEEEECTTSSCEEE-----------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCEEEEEeccCCCceeEe-----------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            999  6999988754211                 00122788899999997  68999999999999999999999999


Q ss_pred             EcCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEE
Q 016134          271 LNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLY  347 (394)
Q Consensus       271 ~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iw  347 (394)
                      +.+|...|.+++|+  + .+|++++.|++|++||+++++....+........+.+  +.|+|++..+|++|+.|++|+||
T Consensus       165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~l~sg~~dg~v~~w  242 (344)
T 4gqb_B          165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTS--LAWHPQQSEVFVFGDENGTVSLV  242 (344)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEE--EEECSSCTTEEEEEETTSEEEEE
T ss_pred             EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecccee--eeecCCCCcceEEeccCCcEEEE
Confidence            99999999999998  3 5899999999999999999888777655444333443  34788766699999999999999


Q ss_pred             ECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          348 ELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       348 d~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |+++++.+..+.. ...|++++|+|++  +|++|+.|++|+|||+.+.
T Consensus       243 d~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          243 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             ESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            9999988888765 7789999999997  7999999999999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.1e-33  Score=258.40  Aligned_cols=240  Identities=16%  Similarity=0.254  Sum_probs=203.2

Q ss_pred             CCCCccceeeecccccc----ccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCC
Q 016134          122 ESGDKSTSKKTTLKNVC----CHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG  196 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~----~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg  196 (394)
                      ..+|...|.+++ |+++    +.++++++.++    +|+||++.++. .....+.+|...|.+++|++++.++++++.|+
T Consensus        28 ~~~H~~~V~~v~-~~~~~~~~~~~l~tgs~D~----~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           28 EQAHDDAIWSVA-WGTNKKENSETVVTGSLDD----LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             TTSSSSCEEEEE-EC-------CEEEEEETTS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cccCCCcEEEEE-EecCCCCCCCEEEEEcCCC----CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            457888999999 8875    44666555554    99999997652 45567899999999999999999999999999


Q ss_pred             c--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134          197 T--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN  272 (394)
Q Consensus       197 ~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  272 (394)
                      +  +||+++++.+..                     ...|...+.+++|+  +++|++++.|+.|++||+++++....+.
T Consensus       103 ~i~lWd~~~~~~~~~---------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A          103 HIRLWDLENGKQIKS---------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             EEEEEETTTTEEEEE---------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred             cEEEEECCCCCEEEE---------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence            9  699999877631                     11455566677776  6789999999999999999999999999


Q ss_pred             CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          273 DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       273 ~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      .|...|.+++|+  +++|++++.|+.|++||+++++.+..+..|...+..++    |+|+++ +|++++.|++|+|||++
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~----~spd~~-~l~s~s~dg~i~iwd~~  236 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT----FSPDSQ-LLVTASDDGYIKIYDVQ  236 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEE----ECTTSC-EEEEECTTSCEEEEETT
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEE----EcCCCC-EEEEEcCCCeEEEEECC
Confidence            999999999998  78999999999999999999988888877776555444    599998 99999999999999999


Q ss_pred             CCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          351 SFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       351 ~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +++....+.. ...|.+++|+|++ +|++++.|+.|++||+.+.
T Consensus       237 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            9988877765 6679999999999 9999999999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-33  Score=274.57  Aligned_cols=283  Identities=20%  Similarity=0.309  Sum_probs=231.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..+++||.|++|++||++++....            ...+|...|.++. +++.+ ++++++.+    ++|++||+.+
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~------------~~~~h~~~V~~l~-~~~~~-~l~s~s~d----g~i~vwd~~~  192 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLL------------QLSGHDGGVWALK-YAHGG-ILVSGSTD----RTVRVWDIKK  192 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEE------------EECCCSSCEEEEE-ECSTT-EEEEEETT----SCEEEEETTT
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEE------------EEeCCCcCEEEEE-EcCCC-EEEEEeCC----CCEEEEECCC
Confidence            56789999999999999999877542            3558888999999 88877 55555554    4999999998


Q ss_pred             CceEEEEecccCCCeEEEEec--CCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecCCCCC
Q 016134          163 GLTMLAKLEGHEKAVSGIALP--LRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGHTR  236 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s--~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~~h~~  236 (394)
                      + +.+..+.+|...|.+++|+  +++++|++++.|+.  +||+.++..............+.+.+.  ..+.....+|..
T Consensus       193 ~-~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (464)
T 3v7d_B          193 G-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  271 (464)
T ss_dssp             T-EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred             C-cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence            7 7889999999999999998  57899999999999  699998765432222211222222222  233445668999


Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      .|.++..++++|++++.|+.|++||+++++++..+.+|...|.++.|+  +++|++++.|+.|++||+++++.+..+..|
T Consensus       272 ~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  351 (464)
T 3v7d_B          272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH  351 (464)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence            999999899999999999999999999999999999999999999998  789999999999999999999988888777


Q ss_pred             cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ......+.    ++  +. +|++++.|+.|++||+.+........+...+..++|++++ +|++++ |+.|++||+.+.
T Consensus       352 ~~~v~~~~----~~--~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          352 TALVGLLR----LS--DK-FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             SSCEEEEE----EC--SS-EEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             CCcEEEEE----Ec--CC-EEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            65543333    34  44 8999999999999999998888777777788889999999 888887 899999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-33  Score=286.20  Aligned_cols=268  Identities=19%  Similarity=0.275  Sum_probs=218.0

Q ss_pred             cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      ..++|||.|++|++|++.+......       .......||...|.++. ++|++.++++++.+|    .|+|||+.++ 
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~~~~~~-------~~~~~~~~h~~~v~~v~-~s~~g~~l~sgs~Dg----~v~vwd~~~~-  462 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKDDKAYG-------VAQRRLTGHSHFVEDVV-LSSDGQFALSGSWDG----ELRLWDLAAG-  462 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCSTTCSC-------EEEEEEECCSSCEEEEE-ECTTSSEEEEEETTS----EEEEEETTTT-
T ss_pred             CEEEEEeCCCcEEEEEccCCCcccc-------cccceecCCCCcEEEEE-ECCCCCEEEEEeCCC----cEEEEECCCC-
Confidence            4688999999999999986542100       01123568999999999 999999998777666    9999999887 


Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      +.+..+.+|...|.+++|+|++++|+|++.|++  |||+.......+..                  ...+|...|.+++
T Consensus       463 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~------------------~~~~h~~~v~~~~  524 (694)
T 3dm0_A          463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE------------------GGEGHRDWVSCVR  524 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS------------------STTSCSSCEEEEE
T ss_pred             cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc------------------CCCCCCCcEEEEE
Confidence            788899999999999999999999999999999  69986654433221                  1126888899999


Q ss_pred             ecC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC
Q 016134          243 VGR----SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE  316 (394)
Q Consensus       243 ~~~----~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~  316 (394)
                      |++    ..|++++.|++|+|||++++++...+.+|...|++++|+  +++|++++.|++|++||+++++.+..+..+  
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--  602 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--  602 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--
T ss_pred             EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--
Confidence            973    479999999999999999999999999999999999998  789999999999999999988776655432  


Q ss_pred             CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--------------------CcEEEEEECCCC-EE
Q 016134          317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--------------------HEVRVIEIGPDK-LF  375 (394)
Q Consensus       317 ~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------------------~~v~~l~~sp~~-~l  375 (394)
                       ..+.  .++|+|++. +|++++ |+.|+|||++++..+..+...                    -.+++++|+|++ +|
T Consensus       603 -~~v~--~~~~sp~~~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          603 -SVIH--ALCFSPNRY-WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             -SCEE--EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             -CcEE--EEEEcCCCc-EEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence             2233  345799987 666554 677999999998877665421                    137899999999 99


Q ss_pred             EEEeCCCeEEEEeCC
Q 016134          376 FTGDGAGMLGVWKLL  390 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~  390 (394)
                      ++|+.||.|+||++.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.5e-32  Score=254.10  Aligned_cols=223  Identities=21%  Similarity=0.304  Sum_probs=198.6

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------  232 (394)
                      +...++.+|.+.|++++|+|++++|++++.|++  |||+.+++.+ .+..+...|.+++|+|+  .+++++.+       
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            567899999999999999999999999999999  6999988876 66788899999999998  77777655       


Q ss_pred             ---------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC
Q 016134          233 ---------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD  294 (394)
Q Consensus       233 ---------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D  294 (394)
                                     +|...|.++.|. ++.+++++.|++|++||+++++++.++.+|...|.+++|+  +.+|++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence                           688899999997 6789999999999999999999999999999999999998  7799999999


Q ss_pred             CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC---CcEEEEEECC
Q 016134          295 HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK---HEVRVIEIGP  371 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---~~v~~l~~sp  371 (394)
                      ++|++||++++.....+..|...+..+    .|+|++. +|++++.|++|++||+++++.+..+.+.   ..|++++|+|
T Consensus       206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v----~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTGHESDINAI----CFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEE----EECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             CcEEEEECCCCeeEEEEcCCcCCEEEE----EEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence            999999999988888887776544333    4699998 9999999999999999998887777653   3699999999


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCC
Q 016134          372 DK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       372 ~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++ +|++|+.|+.|++||+.+.
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEECCCCeEEEEEcccC
Confidence            99 9999999999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.5e-32  Score=250.33  Aligned_cols=288  Identities=16%  Similarity=0.215  Sum_probs=233.6

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .++++  ++..++.+..+..+.+|+.......            ....+|...|.++. ++|++.+++++. +|    .|
T Consensus        15 ~~~s~--dg~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~h~~~v~~~~-~~~~~~~l~~~~-dg----~i   74 (337)
T 1gxr_A           15 FHVTA--DGQMQPVPFPPDALIGPGIPRHARQ------------INTLNHGEVVCAVT-ISNPTRHVYTGG-KG----CV   74 (337)
T ss_dssp             EEECS--SSCEEECCCCTTSSSSTTCCSEEEE------------EEEECCSSCCCEEE-ECSSSSEEEEEC-BS----EE
T ss_pred             EEECC--CCCEEEeecCCCcEeccccCCcccc------------ceeccCCCceEEEE-EecCCcEEEEcC-CC----eE
Confidence            44555  7777777777666666654432211            12347788999999 999999998765 44    99


Q ss_pred             EEEEcCCCc--eEEEEec--ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE---EEecCCCCcEEEEEEcCC--
Q 016134          156 HSWFCGEGL--TMLAKLE--GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE---FSLDGPVGEVYSMVVANE--  224 (394)
Q Consensus       156 ~iWd~~~~~--~~~~~l~--~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~---~~~~~~~~~v~~l~~~~~--  224 (394)
                      ++||+.++.  ..+..+.  +|...|.+++|+|++++|++++.|+.  +||+++++.   ..+..+...+.+++|+++  
T Consensus        75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  154 (337)
T 1gxr_A           75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK  154 (337)
T ss_dssp             EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred             EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC
Confidence            999997652  2333333  89999999999999999999999998  699998873   256778899999999987  


Q ss_pred             EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134          225 MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       225 ~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  284 (394)
                      .+++++.+                  .|...|.+++|+  +++|++++.|+.|++||+++++.+..+. +...+.+++|+
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s  233 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC  233 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEEC
Confidence            77777765                  688999999997  6799999999999999999999888875 77889999998


Q ss_pred             --CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC
Q 016134          285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH  362 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~  362 (394)
                        +++|++++.|+.|++||+++.+.. .+..+...  +.  .+.|+|+++ +|++++.|+.|++||+.+++.+....+..
T Consensus       234 ~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~--v~--~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~  307 (337)
T 1gxr_A          234 PTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESC--VL--SLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESS  307 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSC--EE--EEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccc--ee--EEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEecCCC
Confidence              789999999999999999876543 34444433  33  334699999 89999999999999999998887777788


Q ss_pred             cEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .|.+++|+|++ +|++++.||.|++|++.
T Consensus       308 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          308 SVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999999999 99999999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-32  Score=264.63  Aligned_cols=293  Identities=11%  Similarity=0.096  Sum_probs=232.9

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC  152 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~  152 (394)
                      ....+|++  ++..+++++.|+++++||+.++....            ...++  .+..+.++++++.++++++.+|   
T Consensus        59 ~~~~~~s~--~g~~l~~~~~d~~v~i~d~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~l~~~~~dg---  119 (420)
T 3vl1_A           59 GKGNTFEK--VGSHLYKARLDGHDFLFNTIIRDGSK------------MLKRA--DYTAVDTAKLQMRRFILGTTEG---  119 (420)
T ss_dssp             CTTCEEEE--EETTEEEEEETTEEEEEECCSEETTT------------TSCSC--CEEEEEEECSSSCEEEEEETTS---
T ss_pred             ccceeeee--cCCeEEEEEcCCcEEEEEecccceee------------EEecC--CceEEEEEecCCCEEEEEECCC---
Confidence            34667777  88899999999999999998776542            22233  2333333889999988777666   


Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLF  227 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~  227 (394)
                       .|++||+.++ +....+.+|...|++++|+|++++|++++.|+.  +||+++++.+ .+.+|...|.+++|+++  .++
T Consensus       120 -~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  197 (420)
T 3vl1_A          120 -DIKVLDSNFN-LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL  197 (420)
T ss_dssp             -CEEEECTTSC-EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred             -CEEEEeCCCc-ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence             9999999877 778888999999999999999999999999998  6999988765 67789999999999988  788


Q ss_pred             EEecC---------------------CCCCCEEEEEe---------------------c--CCeEEEEeCCCeEEEEeCC
Q 016134          228 AGAQD---------------------GHTRPVTCLAV---------------------G--RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       228 ~~~~~---------------------~h~~~V~~l~~---------------------~--~~~l~sgs~Dg~V~iwd~~  263 (394)
                      +++.+                     .|...|.++++                     +  +++|++++.|+.|++||++
T Consensus       198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  277 (420)
T 3vl1_A          198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF  277 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred             EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence            88877                     24555666655                     3  5689999999999999999


Q ss_pred             CCceeEEEc-CCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCce-eeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          264 TLEPVMTLN-DHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       264 ~~~~~~~~~-~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                      +++.+..+. .|...|.+++|+  +. +|++++.|+.|++||+++++. +..+..+.. ..+..+   +.+++. +|+++
T Consensus       278 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~---~~~~~~-~l~s~  352 (420)
T 3vl1_A          278 SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNV---YFAAGA-LFVSS  352 (420)
T ss_dssp             TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEE---EEETTE-EEEEE
T ss_pred             CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEE---EeCCCC-EEEEe
Confidence            998877775 488899999999  55 999999999999999998754 555554332 223332   245676 89999


Q ss_pred             eCCCeEEEEECCCCcee----------EEEecCCcEEEEEECCCCE----EEEEeCCCeEEEEeCCC
Q 016134          339 CNDNTVHLYELPSFMER----------GRIFSKHEVRVIEIGPDKL----FFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       339 s~dg~I~iwd~~~~~~~----------~~~~~~~~v~~l~~sp~~~----l~tgs~Dg~I~vWd~~~  391 (394)
                      +.|+.|++|++......          ....+...|.+++|+|++.    |++.+.+|.+.+|+++.
T Consensus       353 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          353 GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            99999999998874221          2222366799999999874    88889999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-32  Score=257.96  Aligned_cols=246  Identities=15%  Similarity=0.168  Sum_probs=206.4

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|.++. |+|++.++++++.||    +|+|||..++ +....+..|...|.+++|+|++.+|++++.|+.  +
T Consensus        59 ~l~gH~~~V~~~~-~s~d~~~l~s~s~Dg----~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           59 TLKGHGNKVLCMD-WCKDKRRIVSSSQDG----KVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             EEECCSSCEEEEE-ECTTSSEEEEEETTS----EEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             EecCCCCeEEEEE-ECCCCCEEEEEeCCC----eEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            4568999999999 999999998877666    9999999877 667788899999999999999999999999998  6


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      |++.........   ....            ...+|...|.++.|+  +..|++++.|++|++||+++++++.++.+|..
T Consensus       133 ~~~~~~~~~~~~---~~~~------------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~  197 (354)
T 2pbi_B          133 YPLTFDKNENMA---AKKK------------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA  197 (354)
T ss_dssp             EECCCCTTCCSG---GGCE------------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEecccccccc---ccce------------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Confidence            988654211000   0011            111688899999997  56899999999999999999999999999999


Q ss_pred             CcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          277 APMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       277 ~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      .|.++.+.    +++|++++.|++|++||+++++.+..+..|...+..+    .|+|++. +|++++.|++|++||++..
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v----~~~p~~~-~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV----RYYPSGD-AFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE----EECTTSS-EEEEEETTSCEEEEETTTT
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE----EEeCCCC-EEEEEeCCCeEEEEECCCC
Confidence            99999986    4799999999999999999998888877776544333    3699998 9999999999999999998


Q ss_pred             ceeEEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          353 MERGRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+..+..   ...+.+++|+|++ +|++|+.|+.|++||+.+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            77766654   2368999999999 9999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=250.61  Aligned_cols=259  Identities=14%  Similarity=0.173  Sum_probs=224.0

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|.+++ ++|++.++++++.+|    .|++||+.++ +.+..+.+|...|++++|+|++++|++++.|+.  +
T Consensus        27 ~l~~h~~~v~~~~-~s~~~~~l~~~~~dg----~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           27 KLTGHERPLTQVK-YNKEGDLLFSCSKDS----SASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEECCSSCEEEEE-ECTTSCEEEEEESSS----CEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             EEEEeeceEEEEE-EcCCCCEEEEEeCCC----EEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3568888999999 999999999877666    9999999887 788999999999999999999999999999998  6


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC----------------------------------CCCC--CEEE
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD----------------------------------GHTR--PVTC  240 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~----------------------------------~h~~--~V~~  240 (394)
                      ||+++++.+....+...+.++.|+++  .++++..+                                  .|..  .+.+
T Consensus       101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            99999998866668899999999998  66665433                                  2333  8999


Q ss_pred             EEec--CCeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          241 LAVG--RSRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      ++|+  +++|++++.|+.|++||+++ .+.+..+..|...|.+++|+  +.+|++++.|+.|++||+++.+.+..+. +.
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~  259 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD  259 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence            9997  67999999999999999998 78889999999999999998  7899999999999999999888777665 22


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCC--------------eEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEe
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDN--------------TVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg--------------~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs  379 (394)
                        ..+.  ...++|++. ++++++.++              .|++||+.+++.+..+.. ...|++++|+|++ +|++++
T Consensus       260 --~~~~--~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  334 (369)
T 3zwl_B          260 --CPLN--TAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG  334 (369)
T ss_dssp             --SCEE--EEEECSSSS-EEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             --CCce--eEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence              2233  334699999 888888887              899999999988888765 6789999999999 999999


Q ss_pred             CCCeEEEEeCCC
Q 016134          380 GAGMLGVWKLLA  391 (394)
Q Consensus       380 ~Dg~I~vWd~~~  391 (394)
                      .||.|++|+++.
T Consensus       335 ~dg~v~iw~~~~  346 (369)
T 3zwl_B          335 EDGFIRLHHFEK  346 (369)
T ss_dssp             TTSEEEEEEECH
T ss_pred             CCCeEEEEECcc
Confidence            999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.3e-32  Score=251.20  Aligned_cols=244  Identities=13%  Similarity=0.112  Sum_probs=193.5

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~  197 (394)
                      ...||...|.+++ |+|++.++++++.++    +|+|||+.+. .+++.++.+|.++|++++|++  ++++|+||+.|++
T Consensus         4 ~~~~h~~~V~~~~-~s~~g~~las~s~D~----~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            4 IANAHNEMIHDAV-MDYYGKRMATCSSDK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             ECCSCSSCEEEEE-ECTTSSEEEEEETTS----CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             eccCCcCceEEEE-ECCCCCEEEEEeCCC----EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            3568888999999 999999999887766    9999999743 367889999999999999986  4899999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCc--eeE
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLE--PVM  269 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~--~~~  269 (394)
                        |||+++++...+.                   ...+|...|.+++|+    +.+|++++.|++|++||+++..  ...
T Consensus        79 v~iWd~~~~~~~~~~-------------------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           79 VMIWKEENGRWSQIA-------------------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             EEEEEBSSSCBCCCE-------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             EEEEEcCCCceEEEE-------------------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence              6999876421100                   112677888888886    4689999999999999998753  246


Q ss_pred             EEcCCCCCcEEEEEcC---------------CEEEEEeCCCcEEEEEeCCCc----eeeEeecccCCcceEEEEeeECCC
Q 016134          270 TLNDHTDAPMSLLCWD---------------QFLLSCSLDHTIKVWFATGRG----NLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       270 ~~~~h~~~v~~l~~~~---------------~~l~s~s~Dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .+.+|...|.+++|+.               ++|++++.|++|++||++..+    ....+..|...+  .  ++.|+|+
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V--~--~v~~sp~  215 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV--R--DVAWSPT  215 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE--E--EEEECCC
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce--E--EEEECCC
Confidence            6788999999999983               489999999999999998765    334454554433  3  3346898


Q ss_pred             C--CcEEEEEeCCCeEEEEECCCCc--eeEEEe----cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          331 G--KPVLICACNDNTVHLYELPSFM--ERGRIF----SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       331 g--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~----~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +  ..+|++++.|++|+|||++...  ......    +...|.+++|+|++ +|++++.|+.|+||+...+
T Consensus       216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            5  3389999999999999998753  122222    25679999999999 9999999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-31  Score=246.71  Aligned_cols=241  Identities=22%  Similarity=0.347  Sum_probs=200.9

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|.++. ++|++.++++++.+|    .|++|+..++ +....+.+|...|.+++|+|++++|++++.|+.  +
T Consensus        18 ~~~gh~~~v~~~~-~s~~~~~l~s~~~dg----~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           18 TLAGHTKAVSSVK-FSPNGEWLASSSADK----LIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             EECCCSSCEEEEE-ECTTSSEEEEEETTS----CEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEcccCCcEEEEE-ECCCCCEEEEeeCCC----eEEEEeCCCc-ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            3568888999999 999999998877666    9999999887 778889999999999999999999999999998  6


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      ||+++++.+..                     ..+|...|.+++|+  +++|++++.|+.|++||+++++++..+..|..
T Consensus        92 wd~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           92 WDVSSGKCLKT---------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             EETTTCCEEEE---------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EECCCCcEEEE---------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence            99998876531                     12677788888886  67899999999999999999999999999999


Q ss_pred             CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          277 APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      .|.++.|+  +++|++++.|+.|++||+++++.+..+..... ..+.  ...|+|+++ +|++++.|+.|++||+++++.
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVS--FVKFSPNGK-YILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-CCEE--EEEECTTSS-EEEEEETTTEEEEEETTTTEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-CceE--EEEECCCCC-EEEEEcCCCeEEEEECCCCcE
Confidence            99999998  78999999999999999998877766543322 1222  234799998 899999999999999999988


Q ss_pred             eEEEec-CCc---EEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          355 RGRIFS-KHE---VRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       355 ~~~~~~-~~~---v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +..+.. ...   +......+++ +|++|+.||.|++||+.+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            877764 222   2233333556 9999999999999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.1e-32  Score=258.89  Aligned_cols=271  Identities=13%  Similarity=0.139  Sum_probs=210.8

Q ss_pred             CCcccccccc-cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCC
Q 016134           75 PPSYNRLKNN-LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDEC  152 (394)
Q Consensus        75 ~~~~~~~~~~-~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~  152 (394)
                      ..+|++  ++ ..+++|+.|+++++||++++......          ...+|...|.++. |+| ++.++++++.++   
T Consensus        78 ~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~h~~~v~~~~-~~~~~~~~l~s~~~d~---  141 (383)
T 3ei3_B           78 SLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFI----------QGMGPGDAITGMK-FNQFNTNQLFVSSIRG---  141 (383)
T ss_dssp             EEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEE----------CCCSTTCBEEEEE-EETTEEEEEEEEETTT---
T ss_pred             EEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceee----------ecCCcCCceeEEE-eCCCCCCEEEEEeCCC---
Confidence            344454  55 68999999999999999977653211          2347888999999 999 788888777666   


Q ss_pred             CeEEEEEcCCCceEEEEecc---cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEG---HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~---h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                       .|++||+.+  ..+..+..   |...|.+++|+|++++|++++.|+.  +||++......+.                 
T Consensus       142 -~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------------  201 (383)
T 3ei3_B          142 -ATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK-----------------  201 (383)
T ss_dssp             -EEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE-----------------
T ss_pred             -EEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec-----------------
Confidence             999999985  34455544   4588999999999999999999999  6999533322322                 


Q ss_pred             EEecCCCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCC----CceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcE
Q 016134          228 AGAQDGHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDT----LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTI  297 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i  297 (394)
                           +|...|.+++|+  +. +|++++.|+.|++||+++    ++++..+ .|...|.+++|+   +.+|++++.|+.|
T Consensus       202 -----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i  275 (383)
T 3ei3_B          202 -----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEI  275 (383)
T ss_dssp             -----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred             -----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence                 677788888887  44 899999999999999987    6677776 599999999997   5899999999999


Q ss_pred             EEEEeCCCceeeEeecccCC-------cce------EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---C
Q 016134          298 KVWFATGRGNLEAAYTHKED-------NGV------LALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---K  361 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~-------~~~------~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~  361 (394)
                      ++||+++.+....+..+...       ...      ..+.+.++|+++ +  +++.|+.|+|||+.+++.+..+..   .
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~  352 (383)
T 3ei3_B          276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLRDPNAA  352 (383)
T ss_dssp             EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred             EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence            99999988776666544321       100      111233566666 3  677899999999999999888874   4


Q ss_pred             CcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          362 HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       362 ~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..+..++|+|++ +|++++ |+.|++||+++
T Consensus       353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          353 GIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            457778999999 889997 99999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.5e-33  Score=261.22  Aligned_cols=270  Identities=14%  Similarity=0.163  Sum_probs=210.0

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc----ccccCCCeecCCCCCeEEEEEcC
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC----CHWLLGNCVRGDECRFLHSWFCG  161 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~----~~~~~~~~~~g~~~~~i~iWd~~  161 (394)
                      .+++++.|+.+++|++.++.......       ......+...|.++. |+|.    +.++++++.+|    .|++||+.
T Consensus        36 ~~~~~~~~~~v~vw~~~~~~~~~~~~-------~~~~~~~~~~v~~~~-~~~~~~~~~~~l~~~~~dg----~i~v~d~~  103 (366)
T 3k26_A           36 LVFATVGSNRVTLYECHSQGEIRLLQ-------SYVDADADENFYTCA-WTYDSNTSHPLLAVAGSRG----IIRIINPI  103 (366)
T ss_dssp             EEEEEEETTEEEEEEECGGGCEEEEE-------EEECSCTTCCEEEEE-EEECTTTCCEEEEEEETTC----EEEEECTT
T ss_pred             eEEEECCCCEEEEEEcCCCcEEEeee-------eccccCCCCcEEEEE-eccCCCCCCCEEEEecCCC----EEEEEEch
Confidence            35555666699999999765421110       001123556789998 9998    66788777666    99999998


Q ss_pred             CCceEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          162 EGLTMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       162 ~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      ++ +.+..+.+|...|++++|+| ++++|++++.|+.  +||+++++.+....                  ...+|...|
T Consensus       104 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~~v  164 (366)
T 3k26_A          104 TM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG------------------GVEGHRDEV  164 (366)
T ss_dssp             TC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC------------------STTSCSSCE
T ss_pred             hc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec------------------ccccccCce
Confidence            87 77889999999999999999 9999999999998  69999887764321                  012677888


Q ss_pred             EEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE----------------------------cCCCCCcEEEEEcCCEE
Q 016134          239 TCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL----------------------------NDHTDAPMSLLCWDQFL  288 (394)
Q Consensus       239 ~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~----------------------------~~h~~~v~~l~~~~~~l  288 (394)
                      .+++|+  +++|++++.|+.|++||+++++.+..+                            ..|...|.++.|++++|
T Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  244 (366)
T 3k26_A          165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI  244 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEE
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEE
Confidence            888887  678999999999999999976654333                            34999999999999999


Q ss_pred             EEEeCCCcEEEEEeCCCce--------------eeEeecccCCcceEEEEeeECCC--CCcEEEEEeCCCeEEEEECCCC
Q 016134          289 LSCSLDHTIKVWFATGRGN--------------LEAAYTHKEDNGVLALGGLNDPD--GKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       289 ~s~s~Dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~--g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      ++++.|+.|++||+++...              +..+..+......+.    |+|+  +. +|++++.|+.|++||+.++
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~~~-~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR----FSMDFWQK-MLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC----CEECTTSS-EEEEECTTSCEEEEECCSS
T ss_pred             EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE----EcCCCCCc-EEEEEecCCcEEEEECCCC
Confidence            9999999999999987644              444444444444333    4666  88 9999999999999999987


Q ss_pred             cee----EEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          353 MER----GRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       353 ~~~----~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +..    ..+..   ...|++++|+|++ +|++++.||.|++||+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          320 DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            533    24443   4679999999999 999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3e-31  Score=257.78  Aligned_cols=251  Identities=21%  Similarity=0.312  Sum_probs=213.1

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeec
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI  201 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~  201 (394)
                      ++...|.++. +  ++.++++++.+|    .|++||..++ +.+..+.+|...|.+++|  ++++|++|+.||.  +||+
T Consensus       131 ~~~~~v~~~~-~--d~~~l~~g~~dg----~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          131 ETSKGVYCLQ-Y--DDQKIVSGLRDN----TIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             SSCCCEEEEE-C--CSSEEEEEESSS----CEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             CCCCcEEEEE-E--CCCEEEEEeCCC----eEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence            4555676665 3  677887776665    9999999887 788999999999999999  7889999999999  6999


Q ss_pred             CCCcEE-EecCCCCcEEEEEEcCCEEEEEecC---------------------CCCCCEEEEEecCCeEEEEeCCCeEEE
Q 016134          202 ESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD---------------------GHTRPVTCLAVGRSRLCSGSMDNTIRV  259 (394)
Q Consensus       202 ~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~---------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~i  259 (394)
                      ++++.+ .+..|...|.++.|+++.+++++.+                     +|...|.+++|++++|++|+.|+.|++
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v  280 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  280 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence            999877 6778999999999999888888876                     688899999999999999999999999


Q ss_pred             EeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe
Q 016134          260 WELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC  339 (394)
Q Consensus       260 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs  339 (394)
                      ||+++++++..+.+|...|.++.+.+.+|++++.|+.|++||+++++.+..+..|...  +.++.  +  ++. +|++|+
T Consensus       281 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~--~--~~~-~l~sg~  353 (435)
T 1p22_A          281 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL--VRCIR--F--DNK-RIVSGA  353 (435)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEE--C--CSS-EEEEEE
T ss_pred             EECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc--EEEEE--e--cCC-EEEEEe
Confidence            9999999999999999999999999999999999999999999999888888776644  33332  3  566 899999


Q ss_pred             CCCeEEEEECCCCc---------eeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          340 NDNTVHLYELPSFM---------ERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       340 ~dg~I~iwd~~~~~---------~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .||.|++||+.++.         .+..+.. ...|++++|  ++ +|++++.||.|++||+...+
T Consensus       354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            99999999997654         5555544 667999999  55 99999999999999997654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.5e-32  Score=257.26  Aligned_cols=232  Identities=22%  Similarity=0.284  Sum_probs=198.1

Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEE
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAG  229 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~  229 (394)
                      +..|+..+. .+.+++.+|.+.|++++|+|++++|+||+.|++  |||+.+++.. .+..|...|.+++|+|+  .++++
T Consensus        48 ~~~~~~~~~-~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           48 AVSFNPTDL-VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             CCCCCCCCC-EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             cccccccee-EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            344655544 788999999999999999999999999999999  6999998876 67789999999999998  77777


Q ss_pred             ecC-------------------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE-----cCCCC
Q 016134          230 AQD-------------------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL-----NDHTD  276 (394)
Q Consensus       230 ~~~-------------------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~-----~~h~~  276 (394)
                      +.|                         +|...|.++.|.   +..|++|+.|++|++||+++++++..+     .+|..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            644                         677888888886   357999999999999999999998887     67999


Q ss_pred             CcEEEEEc---CCEEEEEeCCCcEEEEEeCC-CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          277 APMSLLCW---DQFLLSCSLDHTIKVWFATG-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       277 ~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      .|.++.+.   +.+|++++.|++|++||++. .+.+..+..|...+..++    |+|++. +|++++.|++|+|||++++
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~----~~p~~~-~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK----FFPDGQ-RFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE----ECTTSS-EEEEECSSSCEEEEETTTT
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE----EecCCC-eEEEEcCCCeEEEEECCCC
Confidence            99999996   68999999999999999984 466677777776655444    599998 9999999999999999999


Q ss_pred             ceeEEEecC--------CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          353 MERGRIFSK--------HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~~~~~~--------~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.+..+...        ..|++++|+|++ +|++|+.||.|++||+...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence            887776541        238999999999 9999999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-30  Score=238.45  Aligned_cols=257  Identities=16%  Similarity=0.214  Sum_probs=220.2

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|.++. + +++.++++++.+|    .|++||+.++ +....+..|...|.+++|+|++++|++++.|+.  +
T Consensus        13 ~l~~h~~~v~~~~-~-~~~~~l~s~~~dg----~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A           13 TLKGHDQDVRDVV-A-VDDSKVASVSRDG----TVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             EECCCSSCEEEEE-E-EETTEEEEEETTS----EEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             HhhCCCCCcEEEE-e-cCCCEEEEEEcCC----cEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            4578889999998 7 8888888776666    9999999776 788889999999999999999999999999998  5


Q ss_pred             eecCCCc----EEEecCCCCcEEEEEEcCCEEEEEecC----------------CCCCCEEEEEec---CCeEEEEeCCC
Q 016134          199 WNIESSA----EFSLDGPVGEVYSMVVANEMLFAGAQD----------------GHTRPVTCLAVG---RSRLCSGSMDN  255 (394)
Q Consensus       199 Wd~~~~~----~~~~~~~~~~v~~l~~~~~~l~~~~~~----------------~h~~~V~~l~~~---~~~l~sgs~Dg  255 (394)
                      |++....    ...+..|...|.++.|.+..+++++.+                .|...|.++.|.   +++|++++.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  165 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK  165 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence            8876543    336788999999999988888888876                689999999984   78999999999


Q ss_pred             eEEEEeCCCCceeEEEcC-CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          256 TIRVWELDTLEPVMTLND-HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       256 ~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      .|++||  ..+.+..+.. |...|.++.++ ...|++++.|+.|++||+++++.+..+..+......+    .|+|++. 
T Consensus       166 ~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~----~~~~~~~-  238 (313)
T 3odt_A          166 TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI----KLLPNGD-  238 (313)
T ss_dssp             CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE----EECTTSC-
T ss_pred             CEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEE----EEecCCC-
Confidence            999999  4567777777 89999999998 5559999999999999999998888887766543333    3689884 


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          334 VLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                       |++++.|+.|++||+++++.+..+.. ...|.+++|+|++.+++++.|+.|++|++.+.
T Consensus       239 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          239 -IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             -EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred             -EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence             77899999999999999988887766 55899999999997778999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-31  Score=246.28  Aligned_cols=245  Identities=21%  Similarity=0.242  Sum_probs=184.5

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEe-cc-cCCCeEEEEecCCCCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKL-EG-HEKAVSGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l-~~-h~~~V~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      ...||...|.++. +++.  ++++++.++    +|++||+..+ .+.+..+ .+ |...|.+++|+|++++|++++.|++
T Consensus         9 ~~~~h~~~v~~~~-~s~~--~las~~~D~----~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            9 SLKLYKEKIWSFD-FSQG--ILATGSTDR----KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             EEECCSSCEEEEE-EETT--EEEEEESSS----CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeccCCCceeeec-cCCC--EEEEEcCCC----EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3457888999998 8876  666665555    9999999764 3556666 45 9999999999999999999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC----CceeE
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT----LEPVM  269 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~----~~~~~  269 (394)
                        |||++.......   .           .-......+|...|.+++|+  +++|++|+.|++|+|||++.    .+++.
T Consensus        82 v~iw~~~~~~~~~~---~-----------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           82 VSIWAKEESADRTF---E-----------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             EEEEEC-------C---C-----------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             EEEEEcccCcCccc---c-----------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence              699864321000   0           00011234788899999997  67999999999999999943    35678


Q ss_pred             EEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC--ceeeEeecccCCcceEEEEeeECCC--CCcEEEEEeCCCe
Q 016134          270 TLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR--GNLEAAYTHKEDNGVLALGGLNDPD--GKPVLICACNDNT  343 (394)
Q Consensus       270 ~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~--g~~~l~sgs~dg~  343 (394)
                      .+.+|...|.++.|+  +.+|++++.|++|++||++.+  +++..+..|...+  .+  +.|+|+  +. +|++++.|++
T Consensus       148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v--~~--~~~~~~~~~~-~l~s~s~D~~  222 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV--WS--SDFDKTEGVF-RLCSGSDDST  222 (330)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE--EE--EEECCSSSSC-EEEEEETTSC
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcE--EE--EEecCCCCee-EEEEEeCCCe
Confidence            889999999999998  789999999999999999766  4556666665443  32  346887  55 8999999999


Q ss_pred             EEEEECCCC--------ceeEEEe--cCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          344 VHLYELPSF--------MERGRIF--SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       344 I~iwd~~~~--------~~~~~~~--~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      |+|||+...        .....+.  +...|.+++|+++++|++++.|+.|++|++.+
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence            999998754        2222332  35679999999888999999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.7e-31  Score=250.86  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=183.5

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC------c--eeecCCCcEE-----EecCCCCcEEEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG------T--AWNIESSAEF-----SLDGPVGEVYSMV  220 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg------~--vWd~~~~~~~-----~~~~~~~~v~~l~  220 (394)
                      ....|++...     ....|+..|++++|+|||++|++++.|.      .  +|+..++...     ....+...|.+++
T Consensus        27 ~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~  101 (357)
T 4g56_B           27 KGSAWGRPVT-----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA  101 (357)
T ss_dssp             ------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE
T ss_pred             cccccCCCCC-----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE
Confidence            5677876432     3357999999999999999999999854      3  3555554432     3456788899999


Q ss_pred             EcCC-EEEEEecC----------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134          221 VANE-MLFAGAQD----------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       221 ~~~~-~l~~~~~~----------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      |+|+ .+++++.+                      +|...|.+++|+  +++|++|+.|++|+|||+++++++..+.+|.
T Consensus       102 ~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~  181 (357)
T 4g56_B          102 WVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS  181 (357)
T ss_dssp             EETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            9998 66666665                      688999999997  6799999999999999999999999999999


Q ss_pred             CCcEEEEEc--C-CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          276 DAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       276 ~~v~~l~~~--~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      ..|.+++|+  + .+|++++.|++|++||+++++....+........+.+  +.|+|++..+|++|+.|+.|++||++++
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~--v~~sp~~~~~la~g~~d~~i~~wd~~~~  259 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS--VTWHPEKDDTFACGDETGNVSLVNIKNP  259 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEE--EEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred             CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccc--hhhhhcccceEEEeecccceeEEECCCC
Confidence            999999998  3 4899999999999999998877766554443333443  3579987669999999999999999999


Q ss_pred             ceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          353 MERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.+..+.. ...|++++|+|++  +|++++.|++|+|||+++.
T Consensus       260 ~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          260 DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            88887765 6789999999987  7999999999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-31  Score=247.47  Aligned_cols=242  Identities=20%  Similarity=0.195  Sum_probs=192.1

Q ss_pred             cCCCCcc-ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE--EEEecccCCCeEEEEecCCCCEEEEEeCCCc
Q 016134          121 DESGDKS-TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM--LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~-~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~--~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      ...+|.. .+..++ |+|++.++++++.++    +|+|||+.++...  .....+|...|.+++|+|++++|++++.|++
T Consensus        10 ~~~~h~~~~v~~l~-~sp~g~~las~~~D~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A           10 RVPAHPDSRCWFLA-WNPAGTLLASCGGDR----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EECCSTTSCEEEEE-ECTTSSCEEEEETTS----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eecCCCCCcEEEEE-ECCCCCEEEEEcCCC----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            3457776 888999 999999999887766    9999999776322  2234789999999999999999999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc---eeEE
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE---PVMT  270 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~---~~~~  270 (394)
                        |||+..+.....                   ....+|...|.+++|+  +++|++|+.|++|++||+++.+   ++..
T Consensus        85 v~iw~~~~~~~~~~-------------------~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           85 TCIWKKNQDDFECV-------------------TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             EEEEEECCC-EEEE-------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             EEEEEccCCCeEEE-------------------EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence              699887643211                   1233788888888887  6899999999999999998753   5677


Q ss_pred             EcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEE
Q 016134          271 LNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHL  346 (394)
Q Consensus       271 ~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~i  346 (394)
                      +..|...|.+++|+  +++|++++.|++|++||++..+.  ...+..|...  +.  .+.|+|+++ +|++++.|++|+|
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~--v~--~l~~sp~g~-~l~s~s~D~~v~i  220 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VW--SLAFDPSGQ-RLASCSDDRTVRI  220 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSC--EE--EEEECTTSS-EEEEEETTSCEEE
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCc--eE--EEEECCCCC-EEEEEeCCCeEEE
Confidence            88999999999998  78999999999999999987653  3445555443  33  334799998 9999999999999


Q ss_pred             EECCCC---------------ceeEEEe--cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          347 YELPSF---------------MERGRIF--SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       347 wd~~~~---------------~~~~~~~--~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ||....               ..+..+.  +...|.+++|+|++ .|++++.|+.|++|++..
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            996322               1222232  35679999999999 999999999999999764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-30  Score=244.47  Aligned_cols=239  Identities=16%  Similarity=0.221  Sum_probs=189.8

Q ss_pred             cCCCCccceeeeccc-----cc-cccccCCCeecCCCCCeEEEEEcCCC------ceEEEEecccCCCeEEEEecCCCCE
Q 016134          121 DESGDKSTSKKTTLK-----NV-CCHWLLGNCVRGDECRFLHSWFCGEG------LTMLAKLEGHEKAVSGIALPLRSDK  188 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~-----~~-~~~~~~~~~~~g~~~~~i~iWd~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~  188 (394)
                      ...||...|.++. +     ++ ++.++++++.++    +|++||+.+.      ..+...+.+|...|++++|+|++.+
T Consensus        16 ~l~gH~~~V~~~~-~~~s~~~~~d~~~l~sgs~D~----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           16 ILEGHSDWVTSIV-AGFSQKENEDSPVLISGSRDK----TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEECCSSCEEEEE-ECCCSSTTCCCCEEEEEETTS----CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeccchhhhhhee-eEEEeecCCCCCEEEEEcCCC----EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4568888999998 6     55 788888776665    9999998643      2567889999999999999999999


Q ss_pred             EEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC
Q 016134          189 LFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT  264 (394)
Q Consensus       189 l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~  264 (394)
                      |++++.|++  |||+++++.+.                     ...+|...|.+++|+  +++|++++.|++|++||+..
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~---------------------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYK---------------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEE---------------------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             EEEEcCCCcEEEEECCCCcEEE---------------------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            999999999  69999987653                     112677888888886  67899999999999999984


Q ss_pred             CceeEEEc---CCCCCcEEEEEc--C----------CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134          265 LEPVMTLN---DHTDAPMSLLCW--D----------QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       265 ~~~~~~~~---~h~~~v~~l~~~--~----------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                       +....+.   .|...|.++.|+  +          .+|++++.|+.|++||. ..+....+..|...+.  +  +.|+|
T Consensus       150 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~--~--~~~s~  223 (343)
T 2xzm_R          150 -ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVN--H--LSISP  223 (343)
T ss_dssp             -CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEE--E--EEECT
T ss_pred             -CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccce--E--EEECC
Confidence             4444443   688999999998  2          68999999999999994 4555555665654333  2  34699


Q ss_pred             CCCcEEEEEeCCCeEEEEECCC-CceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          330 DGKPVLICACNDNTVHLYELPS-FMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +++ +|++++.|+.|+|||+.. ......+...+.|.+++|+|++.+++++.|+.|++|++.+.
T Consensus       224 ~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          224 NGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQ  286 (343)
T ss_dssp             TSS-EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSC
T ss_pred             CCC-EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCC
Confidence            999 999999999999999954 34444555677899999999994445667888999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.5e-31  Score=247.94  Aligned_cols=252  Identities=19%  Similarity=0.260  Sum_probs=205.5

Q ss_pred             cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      ..++|+|.|+++++|++.+.....       ........||...|..+. +++++.++++++.++    +|++||+.++ 
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~-------~~~~~~~~~h~~~v~~~~-~s~dg~~l~s~s~D~----~v~~wd~~~~-   97 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKF-------GVPVRSFKGHSHIVQDCT-LTADGAYALSASWDK----TLRLWDVATG-   97 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEE-------EEEEEEEECCSSCEEEEE-ECTTSSEEEEEETTS----EEEEEETTTT-
T ss_pred             cEEEEecCCccEEEecCCCCCccc-------cccceEEeCCcccEEEEE-ECCCCCEEEEEeCCC----EEEEEECCCC-
Confidence            568999999999999987543210       001113568889999999 999999998877666    9999999988 


Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--------EEEEEecC--
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--------MLFAGAQD--  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--------~l~~~~~~--  232 (394)
                      +.+..+.+|...|.+++|+|++++|++++.|++  +||++......+.+|...|.++.+.|.        .+++++.|  
T Consensus        98 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~  177 (319)
T 3frx_A           98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM  177 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred             CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence            788999999999999999999999999999999  699987766788899999999999874        57777766  


Q ss_pred             ----------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe
Q 016134          233 ----------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS  292 (394)
Q Consensus       233 ----------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s  292 (394)
                                      +|...|.+++|+  +.+|++++.|++|+|||+++++++.++.. ...|.+++|+  +.+|++++
T Consensus       178 i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc
Confidence                            699999999997  67999999999999999999999999885 4689999999  66777766


Q ss_pred             CCCcEEEEEeCCCceeeEeecccC----CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          293 LDHTIKVWFATGRGNLEAAYTHKE----DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      . ..+++|++.....+..+.....    ........++|+|+|+ +|++|+.|+.|+|||+.+.
T Consensus       257 ~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          257 A-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             T-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEEC
T ss_pred             C-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEeec
Confidence            5 5699999987665555433211    1112233456899999 9999999999999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.3e-30  Score=247.39  Aligned_cols=248  Identities=20%  Similarity=0.325  Sum_probs=204.1

Q ss_pred             eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEE--ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAK--LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA  205 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~--l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~  205 (394)
                      ..+. |++. ..||.++     |++|+|||..++ ++++.  +.+|...|++|+|+|++++|++|+.|+.  |||+++++
T Consensus       109 ~~l~-wS~~-n~lAvgl-----d~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          109 NLVD-WSSG-NVLAVAL-----DNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             BCEE-ECTT-SEEEEEE-----TTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eeEE-ECCC-CEEEEEe-----CCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            3445 6653 3455433     449999999987 54544  4578889999999999999999999999  69999998


Q ss_pred             EE-EecCCCCcEEEEEEcCCEEEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134          206 EF-SLDGPVGEVYSMVVANEMLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       206 ~~-~~~~~~~~v~~l~~~~~~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~  263 (394)
                      .+ .+.+|...+.++.+.+..+++++.+                   +|...+..+.+.  +.++++++.|+.|+|||..
T Consensus       181 ~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            87 6788999999999998898888876                   788999999997  7899999999999999998


Q ss_pred             CCc----eeEEEcCCCCCcEEEEEc---CCEEEEE--eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134          264 TLE----PVMTLNDHTDAPMSLLCW---DQFLLSC--SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       264 ~~~----~~~~~~~h~~~v~~l~~~---~~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      +++    .+..+..|...|.+++|.   ..+++++  +.|++|++||+++++....+..+.   .+.  ...|++++. .
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~--~~~~~~~~~-~  334 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVC--SILWSPHYK-E  334 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEE--EEEEETTTT-E
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---cee--eeeecCCCC-e
Confidence            765    456778899999999998   4566654  479999999999988877766543   223  234688888 4


Q ss_pred             EEEE--eCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          335 LICA--CNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       335 l~sg--s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      |+++  +.|+.|+|||+++++++..+.. ...|++++|+|++ +|+||+.|++|+|||+.+
T Consensus       335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            5444  3799999999999999988875 7789999999999 999999999999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.5e-32  Score=252.65  Aligned_cols=243  Identities=17%  Similarity=0.144  Sum_probs=186.3

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~  197 (394)
                      ...||...|.+++ |+|++.++++++.++    +|+|||+.++. .++..+.+|.+.|++++|++  ++++|+||+.|++
T Consensus         8 ~~~~H~~~V~~v~-~s~~g~~lasgs~D~----~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQ-MDYYGTRLATCSSDR----SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEE-ECGGGCEEEEEETTT----EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             ecccccCeEEEee-EcCCCCEEEEEeCCC----eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            5678999999999 999999999877666    99999997763 46788999999999999976  4899999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCce---e
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEP---V  268 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~---~  268 (394)
                        |||+++++....                   ....+|...|.+++|+    +.+|++|+.|++|++||+++...   .
T Consensus        83 v~iWd~~~~~~~~~-------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           83 VIIWREENGTWEKS-------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             EEEECCSSSCCCEE-------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             EEEEECCCCcceEE-------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence              699987642110                   0122677788888886    35799999999999999987532   3


Q ss_pred             EEEcCCCCCcEEEEEcC-------------------CEEEEEeCCCcEEEEEeCCCc---eeeEeecccCCcceEEEEee
Q 016134          269 MTLNDHTDAPMSLLCWD-------------------QFLLSCSLDHTIKVWFATGRG---NLEAAYTHKEDNGVLALGGL  326 (394)
Q Consensus       269 ~~~~~h~~~v~~l~~~~-------------------~~l~s~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~  326 (394)
                      ..+.+|...|.++.|+.                   ++|++++.|++|++||++...   .+..+..|...  +.+  +.
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~--V~~--v~  219 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW--VRD--VA  219 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC--EEE--EE
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc--eEE--EE
Confidence            45578999999999872                   489999999999999997552   34444445433  333  34


Q ss_pred             ECCCC----CcEEEEEeCCCeEEEEECCCCc----eeEE-EecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          327 NDPDG----KPVLICACNDNTVHLYELPSFM----ERGR-IFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       327 ~s~~g----~~~l~sgs~dg~I~iwd~~~~~----~~~~-~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |+|++    . +|++++.|++|+||++.+..    .... ..+...|.+++|+|++ +|++++.|+.|++|+...+
T Consensus       220 ~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          220 WAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             CCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             ecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            68886    5 89999999999999998631    1112 2246789999999999 9999999999999997643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.1e-31  Score=265.17  Aligned_cols=293  Identities=14%  Similarity=0.159  Sum_probs=234.9

Q ss_pred             CCCCCcccccccccccccCCCCCcccccccCCC----CCCCCCCCCCCccccccCCCCccc-eeeeccccc--cccccCC
Q 016134           72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENP----GYTGPKNSSSASSTVSDESGDKST-SKKTTLKNV--CCHWLLG  144 (394)
Q Consensus        72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~----~~~~~~~s~~~~~~~~~~~g~~~~-v~~~~~~~~--~~~~~~~  144 (394)
                      .....+|++  ++..+++++ |+.+++|+++++    ...            ....+|... |.+++ ++|  ++.++++
T Consensus        20 ~v~~~~~sp--dg~~l~~~~-~~~v~v~~~~~~~~~~~~~------------~~~~~h~~~~v~~~~-~sp~~~~~~l~s   83 (615)
T 1pgu_A           20 FTTHLSYDP--TTNAIAYPC-GKSAFVRCLDDGDSKVPPV------------VQFTGHGSSVVTTVK-FSPIKGSQYLCS   83 (615)
T ss_dssp             CCCCCEEET--TTTEEEEEE-TTEEEEEECCSSCCSSCSE------------EEECTTTTSCEEEEE-ECSSTTCCEEEE
T ss_pred             ceeEEEECC--CCCEEEEec-CCeEEEEECCCCCCccccc------------eEEecCCCceEEEEE-ECcCCCCCEEEE
Confidence            345666777  788888877 789999999976    322            145688888 99999 999  9999998


Q ss_pred             CeecCCCCCeEEEEEcCCC-------ceEEEEecccCCCeEEEEecCCCCEEEEEeCC----CceeecCCCcEE-EecCC
Q 016134          145 NCVRGDECRFLHSWFCGEG-------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD----GTAWNIESSAEF-SLDGP  212 (394)
Q Consensus       145 ~~~~g~~~~~i~iWd~~~~-------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D----g~vWd~~~~~~~-~~~~~  212 (394)
                      ++.+|    .|++||+.++       .+.+..+..|...|.+++|+|++++|++++.+    +.||.++.++.. .+..|
T Consensus        84 ~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~  159 (615)
T 1pgu_A           84 GDESG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH  159 (615)
T ss_dssp             EETTS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             ecCCC----EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecC
Confidence            77665    9999999643       47788889999999999999999999999988    455444455554 67889


Q ss_pred             CCcEEEEEEcCC---EEEEEecC------------------CCCC---CEEEEEec---CCeEEEEeCCCeEEEEeCCCC
Q 016134          213 VGEVYSMVVANE---MLFAGAQD------------------GHTR---PVTCLAVG---RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       213 ~~~v~~l~~~~~---~l~~~~~~------------------~h~~---~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      ...|.+++|+++   .+++++.+                  +|..   .|.+++|+   +++|++++.|+.|++||++++
T Consensus       160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  239 (615)
T 1pgu_A          160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG  239 (615)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999998   67777766                  5888   99999997   458999999999999999999


Q ss_pred             ceeEEE-c---CCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC
Q 016134          266 EPVMTL-N---DHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN  340 (394)
Q Consensus       266 ~~~~~~-~---~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~  340 (394)
                      +.+..+ .   .|...|.++.|+ +.+|++++.|+.|++||+++++.+..+..+............+. ++. +|++++.
T Consensus       240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~  317 (615)
T 1pgu_A          240 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSL  317 (615)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEET
T ss_pred             CEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC-eEEEEEC
Confidence            999999 6   899999999995 88999999999999999999888877766533222222233343 666 8999999


Q ss_pred             CCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          341 DNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                      |+.|++||+.+++.+..+.. ...|++++| |+  |++++.||.|++|++
T Consensus       318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          318 DGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSS  364 (615)
T ss_dssp             TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTT
T ss_pred             CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEc
Confidence            99999999998777766654 556777777 66  666666666666654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-30  Score=249.46  Aligned_cols=259  Identities=11%  Similarity=0.056  Sum_probs=219.3

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-----eEEEEecccCCCeEEEEecCC----C---CE
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-----TMLAKLEGHEKAVSGIALPLR----S---DK  188 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-----~~~~~l~~h~~~V~~l~~s~~----~---~~  188 (394)
                      ...+|...|.+++ |+|  .++++++.+|    .|++||+.++.     +++..+.+|...|++++|+|+    +   ++
T Consensus        11 ~~~~h~~~i~~~~-~~~--~~l~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A           11 AGKAHDADIFSVS-ACN--SFTVSCSGDG----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             ESSCSSSCEEEEE-ECS--SEEEEEETTS----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhcCeEEEE-ecC--CeEEEEcCCC----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            4668889999999 888  6676666555    99999998763     367888899999999999999    9   99


Q ss_pred             EEEEeCCCc--eeecCCCc------EEEecCC-----CCcEEEEEEc----CC--E-EEEEecC---------C------
Q 016134          189 LFSGSRDGT--AWNIESSA------EFSLDGP-----VGEVYSMVVA----NE--M-LFAGAQD---------G------  233 (394)
Q Consensus       189 l~sgs~Dg~--vWd~~~~~------~~~~~~~-----~~~v~~l~~~----~~--~-l~~~~~~---------~------  233 (394)
                      |++++.|+.  +||+.+++      ...+..+     ...|.+++|+    ++  . +++++.+         .      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            999999998  69999887      4466677     5899999999    76  6 8887655         1      


Q ss_pred             ---------------------CCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC---C---CCCcEEEEEc
Q 016134          234 ---------------------HTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND---H---TDAPMSLLCW  284 (394)
Q Consensus       234 ---------------------h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~---h---~~~v~~l~~~  284 (394)
                                           |...|.+++|+  + +|++++.|+.|++||+++++++..+..   |   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence                                 45668889997  5 999999999999999999999999998   9   9999999998


Q ss_pred             --CCEEEEEeCC---CcEEEEEeCCCceeeEeec-------------ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEE
Q 016134          285 --DQFLLSCSLD---HTIKVWFATGRGNLEAAYT-------------HKEDNGVLALGGLNDPDGKPVLICACNDNTVHL  346 (394)
Q Consensus       285 --~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~i  346 (394)
                        +.+|++++.|   +.|++||+++++.+..+..             +...  +.+  +.|+|+++ +|++++.|+.|+|
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~--~~~~~~~~-~l~~~~~dg~i~i  317 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW--VMS--LSFNDSGE-TLCSAGWDGKLRF  317 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC--EEE--EEECSSSS-EEEEEETTSEEEE
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc--EEE--EEECCCCC-EEEEEeCCCeEEE
Confidence              7899999999   9999999999888887776             4433  333  34699998 8999999999999


Q ss_pred             EECCCCceeEEEe------c----------------CCcEEEEEECCCC-----------EEEEEeCCCeEEEEeCCCC
Q 016134          347 YELPSFMERGRIF------S----------------KHEVRVIEIGPDK-----------LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       347 wd~~~~~~~~~~~------~----------------~~~v~~l~~sp~~-----------~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ||+++++.+..+.      .                ...|++++|+|++           +|++++.||.|++|++.+.
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            9999999888887      2                5779999999995           8999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.1e-30  Score=236.09  Aligned_cols=248  Identities=19%  Similarity=0.304  Sum_probs=198.3

Q ss_pred             eccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEe--cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE
Q 016134          132 TTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKL--EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF  207 (394)
Q Consensus       132 ~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l--~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~  207 (394)
                      ++ |++.+ .||.+ .    |++|+|||+.++ ++++.+  .+|...|++++|+|++++|++|+.|++  |||+++++.+
T Consensus        31 l~-WS~~~-~lAvg-~----D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           31 VD-WSSGN-VLAVA-L----DNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             EE-ECTTS-EEEEE-E----TTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EE-ECCCC-EEEEE-e----CCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            44 77665 45543 2    459999999887 555554  578889999999999999999999999  6999999887


Q ss_pred             -EecCCCCcEEEEEEcCCEEEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCC
Q 016134          208 -SLDGPVGEVYSMVVANEMLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       208 -~~~~~~~~v~~l~~~~~~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                       .+.+|...+.++.+.+..+++++.+                   +|...+..+.+.  +++|++++.|++|++||++++
T Consensus       103 ~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence             6778999999999988888888766                   788899999987  789999999999999999876


Q ss_pred             c----eeEEEcCCCCCcEEEEEc---CCEE--EEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEE
Q 016134          266 E----PVMTLNDHTDAPMSLLCW---DQFL--LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLI  336 (394)
Q Consensus       266 ~----~~~~~~~h~~~v~~l~~~---~~~l--~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~  336 (394)
                      +    .......|...|.++.+.   ...+  ++++.+++|++||.+......... +..  .+..  ..+++++..+++
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~--~v~~--~~~~~~~~~~~~  257 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHS--QVCS--ILWSPHYKELIS  257 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSS--CEEE--EEEETTTTEEEE
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-cee--eeee--eeecccccceEE
Confidence            5    345566788899999987   3443  456678999999998776655443 222  2222  235788873333


Q ss_pred             E-EeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          337 C-ACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       337 s-gs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      + ++.|+.|+|||+++++++..+.. ...|++++|+|++ +|+||+.|++|+|||+.+.
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            2 34799999999999999988875 7789999999999 9999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.1e-31  Score=252.57  Aligned_cols=284  Identities=14%  Similarity=0.148  Sum_probs=225.1

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCCCceEEEE
Q 016134           91 SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAK  169 (394)
Q Consensus        91 s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~  169 (394)
                      +.++++++|+++......            ...+|...|.++. ++| ++.++++++.+|    .|++||+.++. ....
T Consensus        20 ~~~~~~~v~~~~~~~~~~------------~~~~h~~~v~~~~-~s~~~~~~l~~~~~dg----~i~iw~~~~~~-~~~~   81 (408)
T 4a11_B           20 RAESTRRVLGLELNKDRD------------VERIHGGGINTLD-IEPVEGRYMLSGGSDG----VIVLYDLENSS-RQSY   81 (408)
T ss_dssp             HHHHHHHHHTEEECTTEE------------ECCCCSSCEEEEE-ECTTTCCEEEEEETTS----CEEEEECCCCS-SSSC
T ss_pred             eccCcceeeccccCccee------------eeeccCCcEEEEE-EecCCCCEEEEEcCCC----eEEEEECCCCc-ccce
Confidence            457789999998776542            5678999999999 999 999999887766    99999998662 2222


Q ss_pred             e-------------cccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-----EEEE
Q 016134          170 L-------------EGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-----MLFA  228 (394)
Q Consensus       170 l-------------~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~  228 (394)
                      +             .+|...|++++|+| ++.+|++++.|+.  +||+.+++......+...+..+.+.+.     .+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (408)
T 4a11_B           82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV  161 (408)
T ss_dssp             EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEE
T ss_pred             EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEE
Confidence            2             36999999999999 7889999999998  699999998877778889999999874     6777


Q ss_pred             EecC------------------CCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCc-eeEEE---------------
Q 016134          229 GAQD------------------GHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLE-PVMTL---------------  271 (394)
Q Consensus       229 ~~~~------------------~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~-~~~~~---------------  271 (394)
                      ++.+                  .|...|.+++|+  +. +|++++.|+.|++||+++.+ ++..+               
T Consensus       162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
T 4a11_B          162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN  241 (408)
T ss_dssp             EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred             EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence            7665                  689999999998  34 69999999999999998765 45554               


Q ss_pred             cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       272 ~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      ..|...|.+++|+  +++|++++.|+.|++||+++++.......+....................+++++.|+.|++||+
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~  321 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV  321 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence            5688999999998  78999999999999999998776554433221111111111112222225666778999999999


Q ss_pred             CCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          350 PSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       350 ~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+++.+..+.. ...|++++|+|++ +|++++.||.|++|++.+.
T Consensus       322 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          322 YSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             TTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             cCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            99999888874 6789999999999 9999999999999999765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3e-32  Score=264.96  Aligned_cols=270  Identities=13%  Similarity=0.126  Sum_probs=201.8

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ...+++||.|++|+|||++++......          ...||...|.++. |+| ++.++++++.||    +|++||+.+
T Consensus       132 ~~~lasGs~dg~i~lWd~~~~~~~~~~----------~~~gH~~~V~~l~-f~p~~~~~l~s~s~D~----~v~iwd~~~  196 (435)
T 4e54_B          132 PSTVAVGSKGGDIMLWNFGIKDKPTFI----------KGIGAGGSITGLK-FNPLNTNQFYASSMEG----TTRLQDFKG  196 (435)
T ss_dssp             TTCEEEEETTSCEEEECSSCCSCCEEE----------CCCSSSCCCCEEE-ECSSCTTEEEEECSSS----CEEEEETTS
T ss_pred             CCEEEEEeCCCEEEEEECCCCCceeEE----------EccCCCCCEEEEE-EeCCCCCEEEEEeCCC----EEEEeeccC
Confidence            346889999999999999977643211          3568999999999 997 577887666555    999999976


Q ss_pred             CceEEEEe--cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          163 GLTMLAKL--EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       163 ~~~~~~~l--~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      + ......  ..+...+.+++|+|++++|++|+.|+.  +||++......+                      .+|...|
T Consensus       197 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~----------------------~~h~~~v  253 (435)
T 4e54_B          197 N-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNL----------------------RMHKKKV  253 (435)
T ss_dssp             C-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCS----------------------BCCSSCE
T ss_pred             C-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEE----------------------ecccceE
Confidence            5 332222  234456889999999999999999999  699876543332                      2677788


Q ss_pred             EEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE---cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          239 TCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL---NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       239 ~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~---~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .+++|+   ..+|++++.|++|+|||+++.+....+   .+|...|++++|+  +.+|++++.|++|+|||++++.....
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            888886   347889999999999999886654333   5699999999998  78999999999999999998887776


Q ss_pred             eecccCCc--ceEEEEeeECCCCCcEEEEEe------------CCCeEEEEECCCCceeEEEec--CCcEEEE-EECCCC
Q 016134          311 AYTHKEDN--GVLALGGLNDPDGKPVLICAC------------NDNTVHLYELPSFMERGRIFS--KHEVRVI-EIGPDK  373 (394)
Q Consensus       311 ~~~~~~~~--~~~~~~~~~s~~g~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~--~~~v~~l-~~sp~~  373 (394)
                      +..+....  ....+...|+|++. +++++.            .++.|++||..+++.+..+..  ...|.++ +|+|++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg  412 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG  412 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS
T ss_pred             EecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC
Confidence            65544321  11222334566666 444442            346899999999998888764  4557776 699999


Q ss_pred             -EEEEEeCCCeEEEEeCCCCC
Q 016134          374 -LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       374 -~l~tgs~Dg~I~vWd~~~~~  393 (394)
                       +|++|+ |+.|+||++++..
T Consensus       413 ~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          413 DTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             SCEEEEC-SSEEEECCCC---
T ss_pred             CEEEEEc-CCcEEEEECCcCe
Confidence             777765 8899999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.5e-31  Score=248.48  Aligned_cols=256  Identities=13%  Similarity=0.056  Sum_probs=213.5

Q ss_pred             CccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeec
Q 016134          125 DKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI  201 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~  201 (394)
                      |...|.++. ++|++.++++++.++    .|++||+.++ .+.+..+.+|...|++++|+|++++|++++.|+.  +||+
T Consensus         7 ~~~~i~~~~-~s~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            7 LVEPISCHA-WNKDRTQIAICPNNH----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             CSSCCCEEE-ECTTSSEEEEECSSS----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEE-ECCCCCEEEEEeCCC----EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            556888998 999999998776555    9999999876 2388899999999999999999999999999998  6999


Q ss_pred             CCCcEE---EecCCCCcEEEEEEcCC--EEEEEecC----------------------CCCCCEEEEEec--CCeEEEEe
Q 016134          202 ESSAEF---SLDGPVGEVYSMVVANE--MLFAGAQD----------------------GHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       202 ~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~~----------------------~h~~~V~~l~~~--~~~l~sgs  252 (394)
                      ++++..   .+..+...|.+++|+++  .+++++.+                      .|...|.+++|+  +++|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            988743   44678899999999987  77777765                      578899999997  67899999


Q ss_pred             CCCeEEEEeC------------------CCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          253 MDNTIRVWEL------------------DTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       253 ~Dg~V~iwd~------------------~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      .|+.|++||+                  ..++++..+..|...|.+++|+  +++|++++.|+.|++||+++++.+..+.
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            9999999995                  4678889999999999999998  7799999999999999999998888887


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC--Cce--------------------------------e---
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS--FME--------------------------------R---  355 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~--~~~--------------------------------~---  355 (394)
                      .+......+    .|+|++. +|+++ .|+.|++|++.+  ++.                                .   
T Consensus       242 ~~~~~v~~~----~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (372)
T 1k8k_C          242 SETLPLLAV----TFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA  315 (372)
T ss_dssp             CSSCCEEEE----EEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred             cCCCCeEEE----EEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCc
Confidence            665443333    3588887 77777 899999999987  320                                0   


Q ss_pred             ---EEE--ecCCcEEEEEEC-CC----CEEEEEeCCCeEEEEeCCC
Q 016134          356 ---GRI--FSKHEVRVIEIG-PD----KLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       356 ---~~~--~~~~~v~~l~~s-p~----~~l~tgs~Dg~I~vWd~~~  391 (394)
                         ..+  .+...|++++|. ++    .+|++++.||.|++|++.+
T Consensus       316 ~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          316 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence               112  236679999966 56    4999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5e-32  Score=257.39  Aligned_cols=272  Identities=10%  Similarity=0.036  Sum_probs=202.5

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC  152 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~  152 (394)
                      -...+|++  ++..+++++.|+++++||++++.+....          ...+|...|.++. |+|++.++++++.++   
T Consensus        14 v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~----------~~~~h~~~v~~~~-~s~~~~~l~s~s~d~---   77 (377)
T 3dwl_C           14 SYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHAR----------TFSDHDKIVTCVD-WAPKSNRIVTCSQDR---   77 (377)
T ss_dssp             CSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECC----------CBCCCSSCEEEEE-ECTTTCCEEEEETTS---
T ss_pred             EEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEE----------EEecCCceEEEEE-EeCCCCEEEEEeCCC---
Confidence            35566777  8889999999999999999987321111          4568888999999 999999998777665   


Q ss_pred             CeEEEEEcCCCc--eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE----EEecCCCCcEEEEEEcCC
Q 016134          153 RFLHSWFCGEGL--TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE----FSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       153 ~~i~iWd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~----~~~~~~~~~v~~l~~~~~  224 (394)
                       .|++||+.++.  .....+.+|...|++++|+|++++|++++.|+.  +||+++++.    ..+..             
T Consensus        78 -~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------  143 (377)
T 3dwl_C           78 -NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-------------  143 (377)
T ss_dssp             -SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-------------
T ss_pred             -eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-------------
Confidence             99999998762  367788899999999999999999999999998  699988763    12211             


Q ss_pred             EEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC------------------CCceeEEEcCCCCCcEEEEEc
Q 016134          225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD------------------TLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~------------------~~~~~~~~~~h~~~v~~l~~~  284 (394)
                              .|...|.+++|+  +++|++++.|++|++||++                  .++++..+ .|...|.+++|+
T Consensus       144 --------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s  214 (377)
T 3dwl_C          144 --------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS  214 (377)
T ss_dssp             --------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC
T ss_pred             --------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC
Confidence                    277888888887  5789999999999999985                  34566666 899999999998


Q ss_pred             --CCEEEEEeCCCcEEEEEeCCCce----eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-----
Q 016134          285 --DQFLLSCSLDHTIKVWFATGRGN----LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-----  353 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-----  353 (394)
                        +++|++++.|+.|++||+++++.    +..+..|.....    .+.|+|+++ +|++++.++.+ +|+.....     
T Consensus       215 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~  288 (377)
T 3dwl_C          215 PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR----SLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTR  288 (377)
T ss_dssp             TTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEE----EEEEEETTE-EEEEESSSSEE-EECCCC---CCSB
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceE----EEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEe
Confidence              78999999999999999998877    555555554333    234689998 88888766655 66654211     


Q ss_pred             ---------------------e-e---------EEE-----------------ecCCcEEEEEECCCC-----EEEEEeC
Q 016134          354 ---------------------E-R---------GRI-----------------FSKHEVRVIEIGPDK-----LFFTGDG  380 (394)
Q Consensus       354 ---------------------~-~---------~~~-----------------~~~~~v~~l~~sp~~-----~l~tgs~  380 (394)
                                           . .         ..+                 .|...|+++++.+..     .|+|++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~  368 (377)
T 3dwl_C          289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT  368 (377)
T ss_dssp             CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET
T ss_pred             eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC
Confidence                                 0 0         000                 045679999977654     6999999


Q ss_pred             CCeEEEEeC
Q 016134          381 AGMLGVWKL  389 (394)
Q Consensus       381 Dg~I~vWd~  389 (394)
                      ||.|++||+
T Consensus       369 Dg~i~iWdl  377 (377)
T 3dwl_C          369 DGRVVLWTL  377 (377)
T ss_dssp             TSEEEEECC
T ss_pred             CCcEEEecC
Confidence            999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.7e-30  Score=249.30  Aligned_cols=254  Identities=23%  Similarity=0.395  Sum_probs=219.0

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..||...+.. . +++++.++++++.+|    .|++||+.++ +.+..+.+|...|.+++|+  +++|++++.|+.  +|
T Consensus       114 l~~h~~~v~~-~-~~~~g~~l~sg~~dg----~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          114 LKGHDDHVIT-C-LQFCGNRIVSGSDDN----TLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             EECSTTSCEE-E-EEEETTEEEEEETTS----CEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             ecccCCCcEE-E-EEEcCCEEEEEECCC----cEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence            4566655432 2 556688888776665    9999999887 7889999999999999997  679999999999  69


Q ss_pred             ecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecC------------------CCCCCEEEEEecCCeEEEEeCCCeEEEE
Q 016134          200 NIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVW  260 (394)
Q Consensus       200 d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iw  260 (394)
                      |+++++.. .+.+|...|.++.+.++.+++++.+                  +|...|.++.++++++++++.|+.|++|
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw  264 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW  264 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             ECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEE
Confidence            99999877 6778999999999999899988877                  6899999999999999999999999999


Q ss_pred             eCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC
Q 016134          261 ELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN  340 (394)
Q Consensus       261 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~  340 (394)
                      |+++++++.++.+|...|.++.+.+.+|++++.|+.|++||+++++.+..+..+....  .++    .+++. +|++++.
T Consensus       265 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v--~~~----~~~~~-~l~~~~~  337 (445)
T 2ovr_B          265 DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGM----ELKDN-ILVSGNA  337 (445)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--EEE----EEETT-EEEEEET
T ss_pred             ECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE--EEE----EEeCC-EEEEEeC
Confidence            9999999999999999999999999999999999999999999998888877665433  333    23455 8999999


Q ss_pred             CCeEEEEECCCCceeEEEe----cCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          341 DNTVHLYELPSFMERGRIF----SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |+.|++||+++++.+..+.    +...|++++|++ .+|++++.||.|++||+.+.
T Consensus       338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTC
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCCC
Confidence            9999999999999888886    356799999964 39999999999999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4e-30  Score=246.75  Aligned_cols=235  Identities=20%  Similarity=0.318  Sum_probs=188.3

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCC------------------CeEEEEecCC
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEK------------------AVSGIALPLR  185 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~------------------~V~~l~~s~~  185 (394)
                      +|...|.+++ |+|++.++++++ +    +.+++|++.++ +.+..+..|..                  .|++++|+|+
T Consensus        62 ~h~~~V~~v~-fspdg~~la~g~-~----~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  134 (393)
T 1erj_A           62 DHTSVVCCVK-FSNDGEYLATGC-N----KTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  134 (393)
T ss_dssp             ECSSCCCEEE-ECTTSSEEEEEC-B----SCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCCEEEEEE-ECCCCCEEEEEc-C----CcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence            5778999999 999999998765 2    48999999887 66667766542                  4999999999


Q ss_pred             CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEe
Q 016134          186 SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWE  261 (394)
Q Consensus       186 ~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd  261 (394)
                      +++|++|+.|+.  |||+++++.+.                     ...+|...|.+++|+  +++|++++.|++|++||
T Consensus       135 g~~l~s~~~d~~i~iwd~~~~~~~~---------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          135 GKFLATGAEDRLIRIWDIENRKIVM---------------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEE---------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEE---------------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence            999999999999  69999887653                     122677888888886  67899999999999999


Q ss_pred             CCCCceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEee-------cccCCcceEEEEeeECCCC
Q 016134          262 LDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAY-------THKEDNGVLALGGLNDPDG  331 (394)
Q Consensus       262 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~g  331 (394)
                      ++++++...+. +...+.+++++   +.+|++++.|+.|++||++++..+..+.       .|..  .+.  ++.|+|++
T Consensus       194 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~--~v~~~~~g  268 (393)
T 1erj_A          194 LRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--SVY--SVVFTRDG  268 (393)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS--CEE--EEEECTTS
T ss_pred             CCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC--CEE--EEEECCCC
Confidence            99999888876 56789999987   6799999999999999999887766553       2222  233  34579999


Q ss_pred             CcEEEEEeCCCeEEEEECCCCce------------eEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          332 KPVLICACNDNTVHLYELPSFME------------RGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       332 ~~~l~sgs~dg~I~iwd~~~~~~------------~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      + +|++++.|++|++||+++...            ...+. +...|.+++|+|++ +|++|+.|+.|++||+.+.
T Consensus       269 ~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          269 Q-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             S-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             C-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            8 899999999999999986432            22232 36679999999999 9999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=1.8e-30  Score=283.04  Aligned_cols=293  Identities=15%  Similarity=0.190  Sum_probs=244.9

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ..+|++  ++..+++|+.|++|++||+.++....            ...+|...|.+++ |+|++.++++++.++    .
T Consensus       620 ~~~~s~--~~~~l~s~~~d~~i~vw~~~~~~~~~------------~~~~h~~~v~~~~-~s~~~~~l~s~~~d~----~  680 (1249)
T 3sfz_A          620 HACFSQ--DGQRIASCGADKTLQVFKAETGEKLL------------DIKAHEDEVLCCA-FSSDDSYIATCSADK----K  680 (1249)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEETTTCCEEE------------EECCCSSCEEEEE-ECTTSSEEEEEETTS----E
T ss_pred             EEEECC--CCCEEEEEeCCCeEEEEECCCCCEEE------------EeccCCCCEEEEE-EecCCCEEEEEeCCC----e
Confidence            345666  88899999999999999999877532            3458888999999 999999999877665    9


Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecC--CCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEE
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPL--RSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLF  227 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~  227 (394)
                      |+|||+.++ +.+..+.+|...|.+++|+|  ++.++++++.|+.  +||+++++.. .+.+|...|.+++|+|+  .++
T Consensus       681 v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          681 VKIWDSATG-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             EEEEETTTC-CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             EEEEECCCC-ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence            999999987 88899999999999999999  5568999999998  6999999877 67889999999999998  777


Q ss_pred             EEecC-------------------------------------------------------------------------CC
Q 016134          228 AGAQD-------------------------------------------------------------------------GH  234 (394)
Q Consensus       228 ~~~~~-------------------------------------------------------------------------~h  234 (394)
                      +++.+                                                                         +|
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence            77665                                                                         34


Q ss_pred             CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC-----
Q 016134          235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR-----  305 (394)
Q Consensus       235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~-----  305 (394)
                      ...|.+++|+  +.++++++.|+.|++||+.+++.+..+.+|...|.+++|+  +.+|++++.|+.|++||+...     
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~  919 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA  919 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCS
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeee
Confidence            5667788887  6789999999999999999999999999999999999998  789999999999999986421     


Q ss_pred             --------------------------------------------------------------------------ceeeEe
Q 016134          306 --------------------------------------------------------------------------GNLEAA  311 (394)
Q Consensus       306 --------------------------------------------------------------------------~~~~~~  311 (394)
                                                                                                +....+
T Consensus       920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~  999 (1249)
T 3sfz_A          920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG  999 (1249)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC
T ss_pred             ecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec
Confidence                                                                                      011111


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..|...+.    .+.|+|+++ +|++++.|+.|++||+.+++......+...|.+++|+|++.+++++.|+.|++||+.+
T Consensus      1000 ~~h~~~v~----~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A         1000 VGHKKAVR----HIQFTADGK-TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp             CCCSSCCC----CEEECSSSS-CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred             ccCCCceE----EEEECCCCC-EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence            11222222    234689998 8999999999999999999877666667889999999999999999999999999876


Q ss_pred             C
Q 016134          392 K  392 (394)
Q Consensus       392 ~  392 (394)
                      .
T Consensus      1075 ~ 1075 (1249)
T 3sfz_A         1075 G 1075 (1249)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=1.1e-29  Score=244.00  Aligned_cols=244  Identities=19%  Similarity=0.308  Sum_probs=202.5

Q ss_pred             ccccCCCeecCCCCCeEEEEEcCCCceEEEEecc-cCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCC
Q 016134          139 CHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG-HEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVG  214 (394)
Q Consensus       139 ~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~  214 (394)
                      ...+++++.++    .|++||+.++ +....+.. |...|++++|+|++++|++++.|+.  +||+++++.+ .+..|..
T Consensus       103 ~~~l~~~~~d~----~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  177 (401)
T 4aez_A          103 NLNVVAVALER----NVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA  177 (401)
T ss_dssp             TTSEEEEEETT----EEEEEETTTC-CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEEEECCC----eEEEeeCCCC-cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence            34555555554    9999999888 44444444 8999999999999999999999998  6999998876 6678999


Q ss_pred             cEEEEEEcCCEEEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC
Q 016134          215 EVYSMVVANEMLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND  273 (394)
Q Consensus       215 ~v~~l~~~~~~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~  273 (394)
                      .|.++.|.+..+++++.+                   +|...|.+++|+  +.+|++++.|+.|++||+++++++..+..
T Consensus       178 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  257 (401)
T 4aez_A          178 RVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN  257 (401)
T ss_dssp             CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred             ceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence            999999988888888876                   689999999997  67999999999999999999999999999


Q ss_pred             CCCCcEEEEEc---CCEEEEEe--CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE--EeCCCeEEE
Q 016134          274 HTDAPMSLLCW---DQFLLSCS--LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC--ACNDNTVHL  346 (394)
Q Consensus       274 h~~~v~~l~~~---~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s--gs~dg~I~i  346 (394)
                      |...|.+++|+   ..++++++  .|+.|++||+++++.+..+.. .  ..+.  .+.|+|++. +|++  |+.|+.|+|
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~--~~v~--~~~~s~~~~-~l~~~~g~~dg~i~v  331 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-G--SQVT--SLIWSPHSK-EIMSTHGFPDNNLSI  331 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-S--SCEE--EEEECSSSS-EEEEEECTTTCEEEE
T ss_pred             CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-C--CcEE--EEEECCCCC-eEEEEeecCCCcEEE
Confidence            99999999998   35777765  799999999998887776643 2  2233  335799999 6776  448999999


Q ss_pred             EECCCCceeEEEe---cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          347 YELPSFMERGRIF---SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       347 wd~~~~~~~~~~~---~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ||+.++.......   +...|.+++|+|++ +|++++.||.|++|++.+..
T Consensus       332 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9999876554432   36689999999999 99999999999999998653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.8e-31  Score=257.53  Aligned_cols=255  Identities=11%  Similarity=0.134  Sum_probs=203.8

Q ss_pred             cCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCC---Cc--eEEEEecccCCCeEEEEecCCCCEEEEEeC
Q 016134          121 DESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGE---GL--TMLAKLEGHEKAVSGIALPLRSDKLFSGSR  194 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~---~~--~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~  194 (394)
                      ...+|...|.+++ ++| ++.++++++.+|    +|+|||+.+   +.  +....+ +|...|++++|+|++++|++++.
T Consensus        58 ~~~~h~~~V~~~~-~s~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           58 LMENEPNSITSSA-VSPGETPYLITGSDQG----VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             ECTTTTSCEEEEE-EECSSSCEEEEEETTS----EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred             eccCCCCceEEEE-ECCCCCCEEEEecCCc----eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence            3478889999999 999 999999887666    999999865   31  223333 59999999999999999999999


Q ss_pred             CCc--eeecC---CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCC
Q 016134          195 DGT--AWNIE---SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       195 Dg~--vWd~~---~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      |+.  +||++   +++........ .+..+.+.++        ++...+.++.+.    +.+|++++.|+.|++||++++
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  202 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNF--------GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL  202 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG--------SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEEeccccCCceeeccccc-eeEEEEccCc--------ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            999  69995   55554322111 5555555432        367778888853    678999999999999999999


Q ss_pred             ceeEEEcC--CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee-cccCCcceEEEEeeECCCCCcEEEEEeC
Q 016134          266 EPVMTLND--HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY-THKEDNGVLALGGLNDPDGKPVLICACN  340 (394)
Q Consensus       266 ~~~~~~~~--h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~~l~sgs~  340 (394)
                      +++..+..  |...|++++|+  +.+|++++.|+.|++||+++++.+..+. .+...+..+.+...|++++. +|++++.
T Consensus       203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~  281 (437)
T 3gre_A          203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSS  281 (437)
T ss_dssp             CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEEST
T ss_pred             eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcC
Confidence            99999988  88999999998  7899999999999999999988777664 44433334433334567777 8999999


Q ss_pred             CCeEEEEECCCCceeEEEe---------------------------cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          341 DNTVHLYELPSFMERGRIF---------------------------SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~---------------------------~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |+.|+|||+++++.+..+.                           +...|++++|+ ++ +|++++.|+.|++||+.+.
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc
Confidence            9999999999998877766                           23348899999 66 9999999999999998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.6e-30  Score=249.76  Aligned_cols=271  Identities=18%  Similarity=0.231  Sum_probs=209.2

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      .+++++.|+.|+||+++........        .....||...|.++. |+| .+.++++++.+|    .|+|||+.++.
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~--------~~~~~~h~~~V~~~~-~~p~~~~~l~s~s~dg----~v~vw~~~~~~  115 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKN--------VPLVCGHTAPVLDIA-WCPHNDNVIASGSEDC----TVMVWEIPDGG  115 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTT--------CCCBCCCSSCEEEEE-ECTTCTTEEEEEETTS----EEEEEECCTTC
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCC--------CceEecCCCCEEEEE-eCCCCCCEEEEEeCCC----eEEEEEccCCC
Confidence            3456888999999999754321100        114578999999999 999 889998877666    99999997763


Q ss_pred             ------eEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCC
Q 016134          165 ------TMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHT  235 (394)
Q Consensus       165 ------~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~  235 (394)
                            +++..+.+|...|++++|+|++ ++|++++.|+.  |||+++++......                   ...|.
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~  176 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-------------------PDVHP  176 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------TTTCC
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------------cCCCC
Confidence                  5678899999999999999998 69999999998  69999987653210                   02677


Q ss_pred             CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCC-cEEEEEc--CCEEEEE---eCCCcEEEEEeCCCc
Q 016134          236 RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDA-PMSLLCW--DQFLLSC---SLDHTIKVWFATGRG  306 (394)
Q Consensus       236 ~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~-v~~l~~~--~~~l~s~---s~Dg~i~vwd~~~~~  306 (394)
                      ..|.+++|+  +++|++++.|+.|++||+++++++..+ ..|... +.++.|+  +.+|+++   +.|+.|++||+++.+
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            888888886  678999999999999999999999998 788776 8899998  6678887   689999999998866


Q ss_pred             eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-eE---EEecCCcEEEEEECCCC-EEEEEeCC
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-RG---RIFSKHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-~~---~~~~~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                      .............+..  ..|+|+++.++++++.|+.|++||+.+++. +.   .+.+...|.+++|+|++ ++++  .+
T Consensus       257 ~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~  332 (402)
T 2aq5_A          257 EPLSLQELDTSSGVLL--PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC  332 (402)
T ss_dssp             SCSEEEECCCCSSCEE--EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred             CCceEEeccCCCceeE--EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence            5322222222223333  347999994445677899999999998873 22   23335789999999999 6553  56


Q ss_pred             CeEEEEeCCCC
Q 016134          382 GMLGVWKLLAK  392 (394)
Q Consensus       382 g~I~vWd~~~~  392 (394)
                      +.+++|++.+.
T Consensus       333 ~~~~~~~l~~~  343 (402)
T 2aq5_A          333 EIARFYKLHER  343 (402)
T ss_dssp             EEEEEEEEETT
T ss_pred             eeEEEEEcCCC
Confidence            79999998753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.2e-30  Score=246.31  Aligned_cols=282  Identities=12%  Similarity=0.064  Sum_probs=195.7

Q ss_pred             CcccccccccccccCCCCC-------cccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCe--
Q 016134           76 PSYNRLKNNLWVSSGSEDR-------IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNC--  146 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~-------~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~--  146 (394)
                      .+|++  ++..+++|++|.       .|++|+++.+....... . .....-...++...+.++. +  .+..++.++  
T Consensus        20 v~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-~-~~~~~~~l~~~~~~v~s~~-~--~~~~~~~g~~~   92 (365)
T 4h5i_A           20 AKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-F-HILSEFALEDNDDSPTAID-A--SKGIILVGCNE   92 (365)
T ss_dssp             EEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-E-EEEEEEECCTTSCCCCEEE-E--ETTEEEEECCC
T ss_pred             EEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-e-eeeeEEEccCCCCceEEEE-e--CCCEEEEEECC
Confidence            34444  788888987755       49999998765321000 0 0000012345555666555 3  334443333  


Q ss_pred             -----ecCCCCCeEEEEEcCCCceEEE---Ee-----cccCCCeEEEEecCCCCEEEEEe--CCCc--eeecCCCcEEEe
Q 016134          147 -----VRGDECRFLHSWFCGEGLTMLA---KL-----EGHEKAVSGIALPLRSDKLFSGS--RDGT--AWNIESSAEFSL  209 (394)
Q Consensus       147 -----~~g~~~~~i~iWd~~~~~~~~~---~l-----~~h~~~V~~l~~s~~~~~l~sgs--~Dg~--vWd~~~~~~~~~  209 (394)
                           .+++.++.+|+|++.+....+.   ..     ..+...+.+++|+|||++|++++  .|++  |||+++++.+..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                 3456778999999865432222   22     23456699999999999987655  6777  699999887643


Q ss_pred             cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEE--EcCCCCCcEEEEEc-
Q 016134          210 DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMT--LNDHTDAPMSLLCW-  284 (394)
Q Consensus       210 ~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~--~~~h~~~v~~l~~~-  284 (394)
                      ..                      |...|.+++|+  +++|++++.| .+++|+..+++.+..  ...|...|.+++|+ 
T Consensus       173 ~~----------------------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          173 IE----------------------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             EE----------------------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred             eC----------------------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence            32                      44556666665  6778888754 566777777776543  35688889999998 


Q ss_pred             -CCEEEEEeCCC----cEEEEEeCCCceee----EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          285 -DQFLLSCSLDH----TIKVWFATGRGNLE----AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       285 -~~~l~s~s~Dg----~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                       +.++++++.|+    .+++||+.......    .+..+..  .+.+  +.|+|+|+ +||+|+.|++|+|||+++++.+
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~V~~--~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~  304 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK--GITS--MDVDMKGE-LAVLASNDNSIALVKLKDLSMS  304 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS--CEEE--EEECTTSC-EEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC--CeEe--EEECCCCC-ceEEEcCCCEEEEEECCCCcEE
Confidence             78999999887    68899987654322    2223332  3333  34799999 9999999999999999999988


Q ss_pred             EEEe--cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          356 GRIF--SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ~~~~--~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.  |...|++|+|+||+ +|++++.|++|+||++...
T Consensus       305 ~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          305 KIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            8874  36789999999999 9999999999999999643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-30  Score=248.15  Aligned_cols=258  Identities=15%  Similarity=0.159  Sum_probs=213.8

Q ss_pred             ceeeecccccccc-ccCCCeecC------CCCCeEEEEEcCCCc--eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-
Q 016134          128 TSKKTTLKNVCCH-WLLGNCVRG------DECRFLHSWFCGEGL--TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-  197 (394)
Q Consensus       128 ~v~~~~~~~~~~~-~~~~~~~~g------~~~~~i~iWd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-  197 (394)
                      .+.+++ |+|++. +++++...|      +.|+.|+|||+.++.  +++..+ .|...|++++|+|++++|++++.|+. 
T Consensus        14 ~v~~~~-~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           14 RTATFA-WSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             ESCBCC-BCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hcceEe-eCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence            566677 999986 888887777      778899999998763  233333 68999999999999999999999998 


Q ss_pred             -eeecCC----C-cEEEecCCCCcEEEEEEcCC---EEEEEecC---------------------------CCCCCEEEE
Q 016134          198 -AWNIES----S-AEFSLDGPVGEVYSMVVANE---MLFAGAQD---------------------------GHTRPVTCL  241 (394)
Q Consensus       198 -vWd~~~----~-~~~~~~~~~~~v~~l~~~~~---~l~~~~~~---------------------------~h~~~V~~l  241 (394)
                       +||+.+    . ....+..|...|.+++|+++   .+++++.+                           .|...|.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence             699987    3 33467889999999999975   78887765                           266789999


Q ss_pred             Eec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCC------CCCcEEEEEc--C-CEEEEEeCCC---cEEEEEeCCC-
Q 016134          242 AVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDH------TDAPMSLLCW--D-QFLLSCSLDH---TIKVWFATGR-  305 (394)
Q Consensus       242 ~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h------~~~v~~l~~~--~-~~l~s~s~Dg---~i~vwd~~~~-  305 (394)
                      +|+   +.+|++++.|+.|++||+++++++..+..|      ...|.+++|+  + .+|++++.|+   .|++||+++. 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            997   468999999999999999999999998876      7889999999  3 5899999998   9999999986 


Q ss_pred             ceeeEee-cccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeC
Q 016134          306 GNLEAAY-THKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDG  380 (394)
Q Consensus       306 ~~~~~~~-~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~  380 (394)
                      ..+..+. .|...  +.+  +.|+| ++. +|++++.|+.|++||+++++.+..+.. ...|++++|+|++  +|++++.
T Consensus       252 ~~~~~~~~~~~~~--v~~--~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          252 TPLQTLNQGHQKG--ILS--LDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             SCSBCCCSCCSSC--EEE--EEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             CCcEEeecCccCc--eeE--EEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence            4444444 44433  333  34688 777 899999999999999999988888765 6789999999987  9999999


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      |+.|++|++...
T Consensus       327 d~~i~iw~~~~~  338 (416)
T 2pm9_A          327 DNKIEVQTLQNL  338 (416)
T ss_dssp             SSEEEEEESCCC
T ss_pred             CCcEEEEEccCC
Confidence            999999999764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-29  Score=243.31  Aligned_cols=257  Identities=16%  Similarity=0.129  Sum_probs=211.7

Q ss_pred             CCccceeeecccccccc-ccCCCeecCCCCCeEEEEEc----CCCce-----EEEEecc----------cCCCeEEEEec
Q 016134          124 GDKSTSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFC----GEGLT-----MLAKLEG----------HEKAVSGIALP  183 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~----~~~~~-----~~~~l~~----------h~~~V~~l~~s  183 (394)
                      .|...|.++. ++|++. ++++++.+|    .|++|++    .++..     ....+..          |...|++++|+
T Consensus        43 ~~~~~v~~~~-~s~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           43 VKLDNIVSST-WNPLDESILAYGEKNS----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             EECSCCSEEE-ECSSCTTEEEEEETBT----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             eccCceEEEE-ECCCCCcEEEEecCCc----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence            3446889999 999999 998877666    9999999    77632     4455544          78899999999


Q ss_pred             CCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCC----
Q 016134          184 LRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRP----  237 (394)
Q Consensus       184 ~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~----  237 (394)
                      |++++|++++.|+.  +||........+..|...|.+++|+++  .+++++.+                  .+...    
T Consensus       118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            99999999999998  699554445577889999999999987  78888766                  23333    


Q ss_pred             -----------EEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeC
Q 016134          238 -----------VTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       238 -----------V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~  303 (394)
                                 +.++.|+ ++.+++++.|+.|++||+++++.+..+..|...|.+++|+  +++|++++.|+.|++||++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                       7777887 6789999999999999999999999999999999999998  7899999999999999999


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                      +.+.+..+..+......    +.|+|++  +|++++.|+.|++||+++++.+..+.. ...|.+++|+|++ +|++++.|
T Consensus       278 ~~~~~~~~~~~~~~i~~----~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVS----ASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             SBSCSEEECCCSSCEEE----EEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCccceEecCCCccEEE----EEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence            88877777666543332    3458887  788999999999999999988877765 6789999999999 99999999


Q ss_pred             CeEEEEeCCC
Q 016134          382 GMLGVWKLLA  391 (394)
Q Consensus       382 g~I~vWd~~~  391 (394)
                      |.|++||+.+
T Consensus       352 g~i~i~~~~~  361 (425)
T 1r5m_A          352 GQVNVYDLKK  361 (425)
T ss_dssp             SCEEEEECHH
T ss_pred             CeEEEEECCC
Confidence            9999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=258.29  Aligned_cols=250  Identities=8%  Similarity=0.021  Sum_probs=190.0

Q ss_pred             ccceeeeccccccc---------cccCCCee---------------cCCCCCeEEEEEcCCCce---EEEEecccCCCeE
Q 016134          126 KSTSKKTTLKNVCC---------HWLLGNCV---------------RGDECRFLHSWFCGEGLT---MLAKLEGHEKAVS  178 (394)
Q Consensus       126 ~~~v~~~~~~~~~~---------~~~~~~~~---------------~g~~~~~i~iWd~~~~~~---~~~~l~~h~~~V~  178 (394)
                      ...|.++. |+|..         .++|.+..               +++.|++|+|||+.++..   ...++.+|.+.|.
T Consensus       133 ~~~V~sv~-w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          133 GGLVTDIA-WLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CC--CCCS-CEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCceeEEE-ecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            35778888 88876         77777553               366788999999976532   2345678899999


Q ss_pred             EEEecCC------CCEEEEEeCCCc--eeecCCCcEEE--ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCe
Q 016134          179 GIALPLR------SDKLFSGSRDGT--AWNIESSAEFS--LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSR  247 (394)
Q Consensus       179 ~l~~s~~------~~~l~sgs~Dg~--vWd~~~~~~~~--~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~  247 (394)
                      +|+|+|+      +.+||+++.|++  |||+.++....  ......+..            ...+|...|.+++|+ ++.
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~------------~l~~h~~~v~sv~~s~~~~  279 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL------------TLSLADSLITTFDFLSPTT  279 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE------------EECCTTTCEEEEEESSSSE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE------------EEEcCCCCEEEEEecCCCe
Confidence            9999996      579999999999  69998764210  000000110            123788999999997 678


Q ss_pred             EEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEE--Ec--C-CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          248 LCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLL--CW--D-QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       248 l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~--~~--~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      |++|+.||+|++||++++ .+...+.+|...|.+|+  |.  + .+|++++.|++|+|||+++.+.+..+..+.....+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            999999999999999976 45667889999999994  44  4 689999999999999999877766666554322222


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                        ++.|+|+++ .|++++.|++|+|||++++..+..+. +...|++|+|+|++ +|++|+.|++|++||+..
T Consensus       360 --~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          360 --PVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             --CEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             --ceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence              234699998 79999999999999999987765554 47789999999999 999999999999999753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-31  Score=265.13  Aligned_cols=271  Identities=7%  Similarity=0.001  Sum_probs=196.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc------ccccCCCeecCCCCCeEE
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC------CHWLLGNCVRGDECRFLH  156 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~------~~~~~~~~~~g~~~~~i~  156 (394)
                      +...++|+|.|++|+|||++++......        .....+|...|..++ |+|.      +.+||+++.+|    +|+
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~--------~~~l~~~~~~V~~v~-wsp~~~~~~~~~~LAs~s~Dg----tvr  238 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVK--------VQTIVHSFGEVWDLK-WHEGCHAPHLVGCLSFVSQEG----TIN  238 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEE--------EEEEEECCCSEEEEE-ECSSCCCSSSSCEEEEEETTS----CEE
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceE--------EEEEEecCCcEEEEE-ECCCCCCCCCCceEEEEecCC----eEE
Confidence            4556788999999999999876532100        001235556788998 9986      45677666655    999


Q ss_pred             EEEcCCCc----------eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          157 SWFCGEGL----------TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       157 iWd~~~~~----------~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      |||+.++.          ++..++.+|...|++++|+++ ..|++|+.||+  +||++++.....               
T Consensus       239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~---------------  302 (524)
T 2j04_B          239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSF---------------  302 (524)
T ss_dssp             EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSE---------------
T ss_pred             EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceE---------------
Confidence            99997552          123578899999999999986 48999999999  699987632100               


Q ss_pred             EEEEEecCCCCCCEEEE--Eec--C-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCC--CcEEEEEc--CCEEEEEeCCC
Q 016134          225 MLFAGAQDGHTRPVTCL--AVG--R-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTD--APMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l--~~~--~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~--~v~~l~~~--~~~l~s~s~Dg  295 (394)
                           ...+|...|.+|  .|+  + .+|++++.|++|+|||+++++++.++.+|..  .|.+++|+  ++.|++++.|+
T Consensus       303 -----~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~  377 (524)
T 2j04_B          303 -----YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS  377 (524)
T ss_dssp             -----EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSS
T ss_pred             -----EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCC
Confidence                 112688888888  455  4 6899999999999999999888777777653  57889998  67899999999


Q ss_pred             cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC-----c---------ee------
Q 016134          296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF-----M---------ER------  355 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~-----~---------~~------  355 (394)
                      +|++||++.+..+..+..|...+  .++  .|+|+++ +|++|+.|++|+|||+...     +         .+      
T Consensus       378 tv~lwd~~~~~~~~~l~gH~~~V--~sv--a~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~s  452 (524)
T 2j04_B          378 SLRAVPSRAAFAVHPLVSRETTI--TAI--GVSRLHP-MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYS  452 (524)
T ss_dssp             EEEEEETTCTTCCEEEEECSSCE--EEE--ECCSSCC-BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCC
T ss_pred             cEEEEECcccccceeeecCCCce--EEE--EeCCCCC-eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccC
Confidence            99999999988877777766543  333  4699999 8999999999999985321     0         00      


Q ss_pred             ------------------------EEEe-cCCcEEEEEECCCC----EEEEEeCCCeEEEEeCCCC
Q 016134          356 ------------------------GRIF-SKHEVRVIEIGPDK----LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ------------------------~~~~-~~~~v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~~  392 (394)
                                              ..+. +...|.+|+|+|++    .|++|+.||.|+||++.-+
T Consensus       453 p~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          453 IKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             SSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence                                    0000 13468999999994    8999999999999998743

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=237.03  Aligned_cols=264  Identities=15%  Similarity=0.176  Sum_probs=205.6

Q ss_pred             CCCCccceeeeccccccccccC-CCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCC---CCEEEEEeCCCc
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLL-GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLR---SDKLFSGSRDGT  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~-~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~---~~~l~sgs~Dg~  197 (394)
                      ..+|...|.++. |+|++..++ +++. ...++.|++||+.++........+|...|++++|+|+   +++|++++.|+.
T Consensus        14 ~~~h~~~v~~~~-~~p~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           14 QKGFNYTVFDCK-WVPCSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEECSSCEEEEE-ECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             ccCCCCceEEEE-EcCCCceEEEecCc-cCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            356888999999 999885544 3333 1236699999998874444444589999999999998   699999999998


Q ss_pred             --eeecCCCc--EEEecCCCCcEEEEEEc------CC--EEEEEecC-------------------CC----CCCEEEEE
Q 016134          198 --AWNIESSA--EFSLDGPVGEVYSMVVA------NE--MLFAGAQD-------------------GH----TRPVTCLA  242 (394)
Q Consensus       198 --vWd~~~~~--~~~~~~~~~~v~~l~~~------~~--~l~~~~~~-------------------~h----~~~V~~l~  242 (394)
                        +||+++++  ...+..|...|.++.|.      ++  .+++++.+                   .|    ...|.+++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence              69999886  34678899999999664      44  78888776                   12    23788888


Q ss_pred             ----ec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEeCCCceeeEe
Q 016134          243 ----VG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-----DQFLLSCSLDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       243 ----~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~s~Dg~i~vwd~~~~~~~~~~  311 (394)
                          |+  +.+|++++.|+.|++||++++++... ..|...|.++.|+     +.+|++++.|+.|++||+++.+....+
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence                43  78999999999999999999887554 5588999999997     479999999999999999876655444


Q ss_pred             e-----cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-------------------eeEEEe-cCCcEEE
Q 016134          312 Y-----THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-------------------ERGRIF-SKHEVRV  366 (394)
Q Consensus       312 ~-----~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-------------------~~~~~~-~~~~v~~  366 (394)
                      .     .+...  +.+  +.|+|++..+|++++.|+.|++||++...                   .+..+. +...|++
T Consensus       251 ~~~~~~~~~~~--v~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          251 ASVSEKAHKST--VWQ--VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             EEEEEECCSSC--EEE--EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             eeeccCCCcCC--EEE--EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence            3     34332  333  34689887689999999999999998643                   233333 3668999


Q ss_pred             EEECCCC-EEE-EEeCCCeEEEEeCCCC
Q 016134          367 IEIGPDK-LFF-TGDGAGMLGVWKLLAK  392 (394)
Q Consensus       367 l~~sp~~-~l~-tgs~Dg~I~vWd~~~~  392 (394)
                      ++|+|++ +|+ +++.|+.|++||+...
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            9999999 676 8999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=8e-30  Score=257.02  Aligned_cols=285  Identities=11%  Similarity=0.099  Sum_probs=218.1

Q ss_pred             ccc-ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc---ceeeecccccc-ccccCCCeecCCCCCeEEE
Q 016134           83 NNL-WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS---TSKKTTLKNVC-CHWLLGNCVRGDECRFLHS  157 (394)
Q Consensus        83 ~~~-~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~---~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~i  157 (394)
                      ++. .+++++.|+++++||++++....            ...+|..   .|.++. ++|+ +.++++++.+|    .|++
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~------------~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg----~i~v  233 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPPFKFSA------------SDRTHHKQGSFVRDVE-FSPDSGEFVITVGSDR----KISC  233 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEE------------EECSSSCTTCCEEEEE-ECSTTCCEEEEEETTC----CEEE
T ss_pred             CCCcEEEEEeCCCcEEEEeCCCcceee------------eecccCCCCceEEEEE-ECCCCCCEEEEEeCCC----eEEE
Confidence            444 68999999999999988766432            3456666   899999 9999 99998877766    9999


Q ss_pred             EEcCCCceEEEEe-c---ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCC----CCcEEEEEEcCC-E
Q 016134          158 WFCGEGLTMLAKL-E---GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGP----VGEVYSMVVANE-M  225 (394)
Q Consensus       158 Wd~~~~~~~~~~l-~---~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~----~~~v~~l~~~~~-~  225 (394)
                      ||+.++ +.+..+ .   +|...|.+++|+ ++++|++++.|+.  +||+++++.+. +..+    ...+..+.+... .
T Consensus       234 wd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (615)
T 1pgu_A          234 FDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR  311 (615)
T ss_dssp             EETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred             EECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence            999887 677777 6   899999999999 9999999999998  69998876652 2222    234444444322 3


Q ss_pred             EEEEecC---------------------------------------------------CCCCCEEEEEec-CCeEEEEeC
Q 016134          226 LFAGAQD---------------------------------------------------GHTRPVTCLAVG-RSRLCSGSM  253 (394)
Q Consensus       226 l~~~~~~---------------------------------------------------~h~~~V~~l~~~-~~~l~sgs~  253 (394)
                      +++++.+                                                   .|...|.+++|. ++.|++++.
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  391 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW  391 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence            4433332                                                   255566666665 567778888


Q ss_pred             CCeEEEEeCC----------------------------------CCceeEEEcCCCCCcEEEEEcCCEEEEEeC-CCcEE
Q 016134          254 DNTIRVWELD----------------------------------TLEPVMTLNDHTDAPMSLLCWDQFLLSCSL-DHTIK  298 (394)
Q Consensus       254 Dg~V~iwd~~----------------------------------~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-Dg~i~  298 (394)
                      |+.|++||++                                  +++.+..+. |...+.++++++++|++++. |+.|+
T Consensus       392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEE
Confidence            8888777764                                  344455554 77889999999999999999 99999


Q ss_pred             EEEeCCCcee-eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--cCCcEEEEEECC----
Q 016134          299 VWFATGRGNL-EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--SKHEVRVIEIGP----  371 (394)
Q Consensus       299 vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp----  371 (394)
                      +||+...+.. ..+..+..  .+.  ++.|+|+++ +|++++.|+.|++||+.+++.+..+.  +...|++++|+|    
T Consensus       471 ~~~~~~~~~~~~~~~~~~~--~v~--~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRA--KPS--YISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  545 (615)
T ss_dssp             EEETTEEEEEEECSSCCSS--CEE--EEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             EEECCCccccccccCCccC--ceE--EEEECCCCC-EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc
Confidence            9999875444 23333333  333  334799999 99999999999999999998887776  567899999999    


Q ss_pred             ------CC-EEEEEeCCCeEEEEeCCCC
Q 016134          372 ------DK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       372 ------~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                            ++ +|++++.|+.|++||+.+.
T Consensus       546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          546 ANEEEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ccccccCCCEEEEEcCCCcEEEEECCCC
Confidence                  88 9999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=8.3e-29  Score=231.08  Aligned_cols=224  Identities=22%  Similarity=0.378  Sum_probs=190.4

Q ss_pred             ceEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc--eeecCCCcE------EEecCCCCcEEEEEEcCC--EEEEEecC
Q 016134          164 LTMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT--AWNIESSAE------FSLDGPVGEVYSMVVANE--MLFAGAQD  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~--vWd~~~~~~------~~~~~~~~~v~~l~~~~~--~l~~~~~~  232 (394)
                      .++..+|+||++.|++|+|+|+ +++|+||+.|++  |||+.+.+.      ..+.+|...|.+++|+++  .+++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            3677789999999999999997 689999999999  699986542      256789999999999998  88888877


Q ss_pred             ------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCcEEEEEc----CCE
Q 016134          233 ------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP-VMTLNDHTDAPMSLLCW----DQF  287 (394)
Q Consensus       233 ------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~----~~~  287 (394)
                                        .+...+..+.+.  +.+|++++.|+.+++||+..... ...+.+|...+..+.|.    ..+
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence                              456677777776  67899999999999999976554 34456799999999987    458


Q ss_pred             EEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEE
Q 016134          288 LLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVI  367 (394)
Q Consensus       288 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l  367 (394)
                      +++++.|+.|++||+++.+.+..+..|...+..+    .|+|+++ +|++++.|+.|++||+++.+.+..+.....|.++
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~----~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~  262 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV----TVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL  262 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE----EECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE----EECCCCC-EEEEEeCCCeEEEEEeccCceeeeecCCceEEee
Confidence            8999999999999999998888887776544333    4699998 9999999999999999999999888888899999


Q ss_pred             EECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          368 EIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       368 ~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +|+|++.+++++.|+.|++||++..
T Consensus       263 ~~~~~~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          263 CFSPNRYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EECSSSSEEEEEETTEEEEEETTTT
T ss_pred             ecCCCCceeeccCCCEEEEEECCCC
Confidence            9999997778888999999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.5e-29  Score=234.04  Aligned_cols=252  Identities=11%  Similarity=0.115  Sum_probs=195.1

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc---eEEEEecccCCCeEEEEecC--CCCEEEEEeCC
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL---TMLAKLEGHEKAVSGIALPL--RSDKLFSGSRD  195 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~---~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~D  195 (394)
                      ...||...|.++. |+|++.++++++.+|    .|++||+.++.   +.+..+.+|...|++++|+|  ++++|++++.|
T Consensus         6 ~~~gH~~~v~~~~-~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            6 FDSGHDDLVHDVV-YDFYGRHVATCSSDQ----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             EECCCSSCEEEEE-ECSSSSEEEEEETTS----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cCcccccceeEEE-EcCCCCEEEEeeCCC----eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            5679999999999 999999999887666    99999997553   57788899999999999999  69999999999


Q ss_pred             Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCceeE
Q 016134          196 GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEPVM  269 (394)
Q Consensus       196 g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~~~  269 (394)
                      +.  +||+++++.....   ..         .-.......|...|.+++|+    +++|++++.|+.|++||+++++.+.
T Consensus        81 g~v~vwd~~~~~~~~~~---~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSG---RR---------WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             SCEEEEEECTTSCTTSS---CS---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             CeEEEEecCCCcccccc---cC---------cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence            98  6999886421000   00         00011233678888888886    5689999999999999998877544


Q ss_pred             EEc-------------CCCCCcEEEEEc-----CCEEEEEeCCCcEEEEEeCCCce--eeEeecccCCcceEEEEeeECC
Q 016134          270 TLN-------------DHTDAPMSLLCW-----DQFLLSCSLDHTIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       270 ~~~-------------~h~~~v~~l~~~-----~~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      .+.             .|...+.++.|+     +.+|++++.|+.+.+|+....+.  +..+..|...  +.+  +.|+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~--~~~~p  224 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL--IRS--ISWAP  224 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC--EEE--EEECC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc--eeE--EEECC
Confidence            332             578899999997     67999999999998888766554  3333344433  333  34689


Q ss_pred             CCC---cEEEEEeCCCeEEEEECCCC----------------------------------------------ceeEEEe-
Q 016134          330 DGK---PVLICACNDNTVHLYELPSF----------------------------------------------MERGRIF-  359 (394)
Q Consensus       330 ~g~---~~l~sgs~dg~I~iwd~~~~----------------------------------------------~~~~~~~-  359 (394)
                      ++.   .+|++++.|+.|++||++..                                              +.+..+. 
T Consensus       225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred             CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence            982   39999999999999999864                                              2333333 


Q ss_pred             cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          360 SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       360 ~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +...|++++|+|++ +|++++.||.|++|++.+..
T Consensus       305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            25679999999999 99999999999999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-30  Score=251.93  Aligned_cols=266  Identities=10%  Similarity=0.151  Sum_probs=206.1

Q ss_pred             cccccccCCCCCcccccccCC---CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEE
Q 016134           83 NNLWVSSGSEDRIPHVRNREN---PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWF  159 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~---~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd  159 (394)
                      ++..+++||.|++|++||+++   +......          ...+|...|.++. ++|.+.++++++.+|    .|++||
T Consensus        75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----------~~~~h~~~v~~~~-~~~~~~~l~s~s~dg----~i~vwd  139 (437)
T 3gre_A           75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSS----------LTYDCSSTVTQIT-MIPNFDAFAVSSKDG----QIIVLK  139 (437)
T ss_dssp             SSCEEEEEETTSEEEEEEHHHHHTTCCCSCS----------EEEECSSCEEEEE-ECTTSSEEEEEETTS----EEEEEE
T ss_pred             CCCEEEEecCCceEEEeECcccccCccccee----------eeccCCCCEEEEE-EeCCCCEEEEEeCCC----EEEEEE
Confidence            356889999999999999986   3311111          2225778999999 999999998777666    999999


Q ss_pred             cC---CCceEEEEecc------------cCCCeEEEE--ecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEE
Q 016134          160 CG---EGLTMLAKLEG------------HEKAVSGIA--LPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSM  219 (394)
Q Consensus       160 ~~---~~~~~~~~l~~------------h~~~V~~l~--~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l  219 (394)
                      +.   ++ +.+..+.+            +...+.++.  +++++.+|++++.|+.  +||+++++.+. +..+       
T Consensus       140 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------  211 (437)
T 3gre_A          140 VNHYQQE-SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS-------  211 (437)
T ss_dssp             EEEEEET-TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred             eccccCC-ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-------
Confidence            84   33 33333332            456677776  5678999999999999  69999988763 2210       


Q ss_pred             EEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc------CCEEEE
Q 016134          220 VVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW------DQFLLS  290 (394)
Q Consensus       220 ~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~------~~~l~s  290 (394)
                                   .|...|.+++|+  +.+|++|+.|+.|++||+++++++.++. .|...|.++++.      +.+|++
T Consensus       212 -------------~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s  278 (437)
T 3gre_A          212 -------------PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG  278 (437)
T ss_dssp             -------------GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred             -------------CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence                         267788888886  6789999999999999999999999886 788899999766      348999


Q ss_pred             EeCCCcEEEEEeCCCceeeEeecccCCc------------------------ceEEEEeeECCCCCcEEEEEeCCCeEEE
Q 016134          291 CSLDHTIKVWFATGRGNLEAAYTHKEDN------------------------GVLALGGLNDPDGKPVLICACNDNTVHL  346 (394)
Q Consensus       291 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~s~~g~~~l~sgs~dg~I~i  346 (394)
                      ++.|+.|++||+++++.+..+..+....                        .+.++  .|+ ++. +|++++.|+.|++
T Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l--~~~-~~~-~l~s~~~d~~i~~  354 (437)
T 3gre_A          279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI--SVS-NDK-ILLTDEATSSIVM  354 (437)
T ss_dssp             ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE--EEE-TTE-EEEEEGGGTEEEE
T ss_pred             EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE--EEC-Cce-EEEecCCCCeEEE
Confidence            9999999999999988877776543211                        12222  345 555 8999999999999


Q ss_pred             EECCCCceeEEEe--------------------------------------cCCcEEEEEECCC--C-EEEEEeCCCeEE
Q 016134          347 YELPSFMERGRIF--------------------------------------SKHEVRVIEIGPD--K-LFFTGDGAGMLG  385 (394)
Q Consensus       347 wd~~~~~~~~~~~--------------------------------------~~~~v~~l~~sp~--~-~l~tgs~Dg~I~  385 (394)
                      ||+.+++....+.                                      +...|++++|+++  + +|++|+.||.|+
T Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~  434 (437)
T 3gre_A          355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG  434 (437)
T ss_dssp             EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred             EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence            9999887665554                                      4567999999998  5 999999999999


Q ss_pred             EEe
Q 016134          386 VWK  388 (394)
Q Consensus       386 vWd  388 (394)
                      ||+
T Consensus       435 iw~  437 (437)
T 3gre_A          435 IFQ  437 (437)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            995

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-30  Score=270.66  Aligned_cols=294  Identities=10%  Similarity=0.055  Sum_probs=214.8

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ..+|++  ++..+++|+.|++|+||+.++....             ....|...|..++ |+| +.++++++.++    +
T Consensus        22 ~lafsp--dg~~lAsgs~Dg~I~lw~~~~~~~~-------------~~~~~~~~V~~l~-fsp-g~~L~S~s~D~----~   80 (902)
T 2oaj_A           22 AAAFDF--TQNLLAIATVTGEVHIYGQQQVEVV-------------IKLEDRSAIKEMR-FVK-GIYLVVINAKD----T   80 (902)
T ss_dssp             EEEEET--TTTEEEEEETTSEEEEECSTTCEEE-------------EECSSCCCEEEEE-EET-TTEEEEEETTC----E
T ss_pred             EEEECC--CCCEEEEEeCCCEEEEEeCCCcEEE-------------EEcCCCCCEEEEE-EcC-CCEEEEEECcC----e
Confidence            345555  7889999999999999998765432             1223556899999 999 77887766554    9


Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE------------ecCCCCcEEEEE
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS------------LDGPVGEVYSMV  220 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~------------~~~~~~~v~~l~  220 (394)
                      |++||+.++ +++..+. |...|++++|+|++++|++|+.||.  +||+++++...            ..+|.+.|.+++
T Consensus        81 v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~  158 (902)
T 2oaj_A           81 VYVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ  158 (902)
T ss_dssp             EEEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred             EEEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence            999999887 6677775 7789999999999999999999999  69999887641            246788999999


Q ss_pred             EcCC---EEEEEecCC-----------------------------------CCCCEEEEEec--CCeEEEEeCCCeEEEE
Q 016134          221 VANE---MLFAGAQDG-----------------------------------HTRPVTCLAVG--RSRLCSGSMDNTIRVW  260 (394)
Q Consensus       221 ~~~~---~l~~~~~~~-----------------------------------h~~~V~~l~~~--~~~l~sgs~Dg~V~iw  260 (394)
                      |+|+   .+++++.++                                   |...|.+++|+  +.+|++++.|++|++|
T Consensus       159 ~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          159 WNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW  238 (902)
T ss_dssp             EETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             EccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence            9995   566665442                                   24779999998  6899999999999999


Q ss_pred             eCCCCceeEE--Ec---C-------------CCCCcEEEEEc----C---CEEEEEeCC-----CcEEEEEeC-------
Q 016134          261 ELDTLEPVMT--LN---D-------------HTDAPMSLLCW----D---QFLLSCSLD-----HTIKVWFAT-------  303 (394)
Q Consensus       261 d~~~~~~~~~--~~---~-------------h~~~v~~l~~~----~---~~l~s~s~D-----g~i~vwd~~-------  303 (394)
                      |+++++++..  +.   .             |...|.+++|.    .   .+|++++.|     ..+++|++.       
T Consensus       239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~  318 (902)
T 2oaj_A          239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI  318 (902)
T ss_dssp             ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred             ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence            9999887754  21   1             34468899884    1   356666555     267777631       


Q ss_pred             ----------------------------------------------------------------CCceeeE-------ee
Q 016134          304 ----------------------------------------------------------------GRGNLEA-------AY  312 (394)
Q Consensus       304 ----------------------------------------------------------------~~~~~~~-------~~  312 (394)
                                                                                      ++.....       +.
T Consensus       319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~  398 (902)
T 2oaj_A          319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS  398 (902)
T ss_dssp             CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred             cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence                                                                            1100000       00


Q ss_pred             cccCCcceEEE------------------------------EeeECCCCCcEEEEEeCCCeEEEEECCCCcee----EEE
Q 016134          313 THKEDNGVLAL------------------------------GGLNDPDGKPVLICACNDNTVHLYELPSFMER----GRI  358 (394)
Q Consensus       313 ~~~~~~~~~~~------------------------------~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~----~~~  358 (394)
                      .+...+..+++                              .+.|+|+++ +|++|+.|++|++||+.++...    ..+
T Consensus       399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~~~~~~  477 (902)
T 2oaj_A          399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDNASFEV  477 (902)
T ss_dssp             TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred             ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccCCceEEe
Confidence            00000000111                              123578888 9999999999999999887421    111


Q ss_pred             --------ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          359 --------FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       359 --------~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                              .+...|++++|+|++ +||+|+.||+|+||++.+.
T Consensus       478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence                    235679999999999 9999999999999998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=267.07  Aligned_cols=301  Identities=10%  Similarity=-0.028  Sum_probs=213.3

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCcccc-ccCCCCccceeeecccccc-ccccCCCeecCCCCC
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTV-SDESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECR  153 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~-~~~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~  153 (394)
                      .+|++  +..++++|+.|++|++||++++......  ....... ....+|...|.+++ |+|. ...+++++    .++
T Consensus       104 v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~--i~~~~~~~~~~~~h~~~V~sl~-~sp~~~~~l~~g~----~dg  174 (902)
T 2oaj_A          104 IDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFK--LDNLQKSSFFPAARLSPIVSIQ-WNPRDIGTVLISY----EYV  174 (902)
T ss_dssp             EECCT--TCSEEEEEETTSCEEEEETTTTEEEEEE--ECCHHHHHTCSSSCCCCCCEEE-EETTEEEEEEEEC----SSC
T ss_pred             EEECC--CCCEEEEEcCCCcEEEEECCCCccccce--eccccccccccccCCCCeEEEE-EccCCCCEEEEEe----CCC
Confidence            34455  7788999999999999999987642100  0000000 12467888999999 9995 45666544    445


Q ss_pred             eEEEEEcCCCceEEEEeccc------------------CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEe----
Q 016134          154 FLHSWFCGEGLTMLAKLEGH------------------EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSL----  209 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h------------------~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~----  209 (394)
                      .| +||+.++ +++..+..|                  ...|++++|+|++++|++++.|+.  +||+++++.+..    
T Consensus       175 ~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~  252 (902)
T 2oaj_A          175 TL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF  252 (902)
T ss_dssp             EE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred             cE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence            99 9999887 777777766                  578999999999999999999999  699999887642    


Q ss_pred             --cC-------------CCCcEEEEEEc----CC---EEEEEecCC----------------------------------
Q 016134          210 --DG-------------PVGEVYSMVVA----NE---MLFAGAQDG----------------------------------  233 (394)
Q Consensus       210 --~~-------------~~~~v~~l~~~----~~---~l~~~~~~~----------------------------------  233 (394)
                        ..             +...|.+++|+    |+   .+++++.+.                                  
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~  332 (902)
T 2oaj_A          253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK  332 (902)
T ss_dssp             CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred             ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence              11             24479999994    43   456664431                                  


Q ss_pred             --------CCCCEEEEEec------------CCeEEEEeCCCeEEEEeCCCCceeEE-------EcCCCCCcE-------
Q 016134          234 --------HTRPVTCLAVG------------RSRLCSGSMDNTIRVWELDTLEPVMT-------LNDHTDAPM-------  279 (394)
Q Consensus       234 --------h~~~V~~l~~~------------~~~l~sgs~Dg~V~iwd~~~~~~~~~-------~~~h~~~v~-------  279 (394)
                              |...|.++.+.            +..+++++.|+.|++||+.++.....       +..|...|+       
T Consensus       333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~  412 (902)
T 2oaj_A          333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV  412 (902)
T ss_dssp             EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred             ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence                    23345555432            23688889999999999977643321       222333444       


Q ss_pred             ---------------------------EEEEc--CCEEEEEeCCCcEEEEEeCCCcee--eEee---------cccCCcc
Q 016134          280 ---------------------------SLLCW--DQFLLSCSLDHTIKVWFATGRGNL--EAAY---------THKEDNG  319 (394)
Q Consensus       280 ---------------------------~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~--~~~~---------~~~~~~~  319 (394)
                                                 +++|+  +++|++++.|++|++||+..+...  ..+.         .|.  ..
T Consensus       413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~--~~  490 (902)
T 2oaj_A          413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE--LA  490 (902)
T ss_dssp             EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS--CC
T ss_pred             CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC--Cc
Confidence                                       44444  679999999999999999876321  0111         122  22


Q ss_pred             eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc---------------------------------------------e
Q 016134          320 VLALGGLNDPDGKPVLICACNDNTVHLYELPSFM---------------------------------------------E  354 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~---------------------------------------------~  354 (394)
                      +.  +++|+|+++ +||+|+.|++|+|||+.+++                                             +
T Consensus       491 V~--svafspdg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          491 VD--KISFAAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             EE--EEEEETTTT-EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             ee--EEEecCCCC-eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            33  445799999 99999999999999997652                                             2


Q ss_pred             eEEEe-cCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          355 RGRIF-SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       355 ~~~~~-~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +..+. +...|++|+|+|||+||+|+.|++|+|||+.+.
T Consensus       568 ~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCC
Confidence            33443 367899999999999999999999999998653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5.4e-30  Score=248.94  Aligned_cols=260  Identities=19%  Similarity=0.268  Sum_probs=204.0

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..+++|+.|++|++||++++....            ...+|...|.++. +  ++.++++++.+|    .|++||+.+
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~------------~~~~h~~~v~~l~-~--~~~~l~sg~~dg----~i~vwd~~~  202 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKR------------ILTGHTGSVLCLQ-Y--DERVIITGSSDS----TVRVWDVNT  202 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEE------------EECCCSSCEEEEE-C--CSSEEEEEETTS----CEEEEESSS
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEE------------EEcCCCCcEEEEE-E--CCCEEEEEcCCC----eEEEEECCC
Confidence            77789999999999999998876532            3567888898888 6  567777666555    999999988


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCCEEEEEecC----
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQD----  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~~----  232 (394)
                      + +.+..+.+|...|.+++|+  +.+|++++.|+.  +||++++...    .+.+|...|.++.+....+++++.+    
T Consensus       203 ~-~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~  279 (435)
T 1p22_A          203 G-EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK  279 (435)
T ss_dssp             C-CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             C-cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence            8 7889999999999999997  459999999999  6999887643    5678999999999988899988877    


Q ss_pred             --------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEE
Q 016134          233 --------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIK  298 (394)
Q Consensus       233 --------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~  298 (394)
                                    +|...|.++.++++++++|+.|+.|++||+++++++.++.+|...|.++.+++.+|++++.|+.|+
T Consensus       280 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~  359 (435)
T 1p22_A          280 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK  359 (435)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred             EEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEE
Confidence                          689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCc---------eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEE
Q 016134          299 VWFATGRG---------NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEI  369 (394)
Q Consensus       299 vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~  369 (394)
                      +||++...         .+..+..|...+..+.    |  ++. +|++++.||.|++||+.+...........+..++.|
T Consensus       360 vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~----~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  432 (435)
T 1p22_A          360 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ----F--DEF-QIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTY  432 (435)
T ss_dssp             EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE----E--CSS-CEEECCSSSEEEEEC---------------------
T ss_pred             EEECCCCCCccccccchheeeccCCCCCeEEEE----e--CCC-EEEEEeCCCEEEEEECCCCCCcccCCCCCCccceee
Confidence            99997655         5666666665544443    3  566 799999999999999998766555554555666655


Q ss_pred             CC
Q 016134          370 GP  371 (394)
Q Consensus       370 sp  371 (394)
                      .+
T Consensus       433 ~~  434 (435)
T 1p22_A          433 IS  434 (435)
T ss_dssp             --
T ss_pred             ec
Confidence            43

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=4.1e-29  Score=232.48  Aligned_cols=253  Identities=14%  Similarity=0.159  Sum_probs=209.0

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      ..+..++ ++|++.+++.+...+    .+.+|......+.+. ..+|...|++++|+|++++|++++ |+.  +||++++
T Consensus        10 ~~v~~~~-~s~dg~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~   82 (337)
T 1gxr_A           10 KPAYSFH-VTADGQMQPVPFPPD----ALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP   82 (337)
T ss_dssp             EECCEEE-ECSSSCEEECCCCTT----SSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred             CceeEEE-ECCCCCEEEeecCCC----cEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence            4577788 999999998776544    344455544434444 448999999999999999999999 888  6999876


Q ss_pred             cEE------EecCCCCcEEEEEEcCC--EEEEEecC--------------------CCCCCEEEEEec--CCeEEEEeCC
Q 016134          205 AEF------SLDGPVGEVYSMVVANE--MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSGSMD  254 (394)
Q Consensus       205 ~~~------~~~~~~~~v~~l~~~~~--~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sgs~D  254 (394)
                      +..      ....+...|.+++|+++  .+++++.+                    .|...|.+++|+  +++|++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence            532      22378899999999988  77777765                    578889999997  6789999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCC
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  332 (394)
                      +.|++||+++++.+..+..|...|.+++|+  +++|++++.|+.|++||+++++.+..+. +..  .+.  ...|+|+++
T Consensus       163 g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~--~v~--~~~~s~~~~  237 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS--QIF--SLGYCPTGE  237 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS--CEE--EEEECTTSS
T ss_pred             CcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCC--ceE--EEEECCCCC
Confidence            999999999999999999999999999998  7799999999999999999887766553 222  233  334799998


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          333 PVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       333 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                       +|++++.|+.|++||+++.+......+...|.+++|+|++ +|++++.|+.|++|++.+.
T Consensus       238 -~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          238 -WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             -EEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             -EEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence             8999999999999999998776555557889999999999 9999999999999998765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=2.4e-29  Score=262.43  Aligned_cols=293  Identities=18%  Similarity=0.195  Sum_probs=237.7

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR  153 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~  153 (394)
                      ...+|++  ++.++++++.|++|++||++++....            ...+|...|+++. |+|++.++++++.+|    
T Consensus        17 ~~i~~sp--~~~~la~~~~~g~v~iwd~~~~~~~~------------~~~~~~~~v~~~~-~s~~~~~l~~~~~dg----   77 (814)
T 3mkq_A           17 KGIDFHP--TEPWVLTTLYSGRVEIWNYETQVEVR------------SIQVTETPVRAGK-FIARKNWIIVGSDDF----   77 (814)
T ss_dssp             EEEEECS--SSSEEEEEETTSEEEEEETTTTEEEE------------EEECCSSCEEEEE-EEGGGTEEEEEETTS----
T ss_pred             EEEEECC--CCCEEEEEeCCCEEEEEECCCCceEE------------EEecCCCcEEEEE-EeCCCCEEEEEeCCC----
Confidence            3455666  88899999999999999998876432            3447778899999 999999999877655    


Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE-E-EecCCCCcEEEEEEcC-C--EE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE-F-SLDGPVGEVYSMVVAN-E--ML  226 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~-~-~~~~~~~~v~~l~~~~-~--~l  226 (394)
                      .|++||+.++ +.+..+.+|.+.|++++|+|++++|++++.|+.  +||++++.. . .+..|...|.+++|+| +  .+
T Consensus        78 ~i~vw~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           78 RIRVFNYNTG-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             EEEEEETTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCC-cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            9999999887 788899999999999999999999999999998  699998733 3 5678999999999998 4  77


Q ss_pred             EEEecC-------------------CCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134          227 FAGAQD-------------------GHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       227 ~~~~~~-------------------~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~  283 (394)
                      ++++.+                   .|...|.+++|+    +.+|++++.|+.|++||+++++++..+.+|...|.+++|
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~  236 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF  236 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            777766                   344788999985    578999999999999999999999999999999999999


Q ss_pred             c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--
Q 016134          284 W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--  359 (394)
Q Consensus       284 ~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--  359 (394)
                      +  +++|++++.|+.|++||+.+++.+..+..+......    +.|+|++..++++.+.++.+.+|++........+.  
T Consensus       237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (814)
T 3mkq_A          237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC----IATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPV  312 (814)
T ss_dssp             CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEE----EEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSS
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEE----EEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCC
Confidence            9  779999999999999999988888777666543332    34689987554455557789999876543222111  


Q ss_pred             ------------------------------------------cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          360 ------------------------------------------SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       360 ------------------------------------------~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                                                                ....+.+++|+|++ +|++++ |+.+.+|++..
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence                                                      02246889999999 777777 89999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=238.59  Aligned_cols=242  Identities=14%  Similarity=0.130  Sum_probs=194.1

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCC--CCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~  197 (394)
                      ...||...|.+++ |+|++.++++++.+|    .|+|||+.. ..+.+..+.+|...|++++|+++  +++|++++.|+.
T Consensus         6 ~~~~h~~~v~~~~-~s~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            6 IANAHNELIHDAV-LDYYGKRLATCSSDK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             CEEECCCCEEEEE-ECSSSSEEEEEETTS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             EecCCcccEEEEE-EcCCCCEEEEEECCC----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4568888999999 999999999887766    999999963 34778889999999999999977  999999999998


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCc--eeE
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLE--PVM  269 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~--~~~  269 (394)
                        +||+++++.....                   ....|...|.+++|+    +.+|++++.|+.|++||+++.+  ...
T Consensus        81 v~iwd~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           81 VLIWKEENGRWSQIA-------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             EEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             EEEEEcCCCceeEee-------------------eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence              6999988632110                   122577788888886    4689999999999999998873  455


Q ss_pred             EEcCCCCCcEEEEEc---------------CCEEEEEeCCCcEEEEEeCCCcee----eEeecccCCcceEEEEeeECCC
Q 016134          270 TLNDHTDAPMSLLCW---------------DQFLLSCSLDHTIKVWFATGRGNL----EAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       270 ~~~~h~~~v~~l~~~---------------~~~l~s~s~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .+..|...|.++.|+               +.+|++++.|+.|++||++.....    ..+..|...  +.  ++.|+|+
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~--v~--~~~~sp~  217 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--VR--DVAWSPT  217 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--EE--EEEECCC
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc--Ee--EEEECCC
Confidence            677899999999997               368999999999999999876533    233334332  33  3346999


Q ss_pred             ---CCcEEEEEeCCCeEEEEECCCCcee--EEEe----cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          331 ---GKPVLICACNDNTVHLYELPSFMER--GRIF----SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       331 ---g~~~l~sgs~dg~I~iwd~~~~~~~--~~~~----~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                         +. +|++++.|+.|+|||++++...  ..+.    +...|++++|+|++ +|++++.||.|++|++..
T Consensus       218 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          218 VLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence               66 9999999999999999987421  1221    35679999999999 999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=5.5e-31  Score=287.18  Aligned_cols=244  Identities=20%  Similarity=0.275  Sum_probs=205.5

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCC
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGP  212 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~  212 (394)
                      ++|++.+++.++.+    +.|++||+.++ +....+.+|...|++++|+|++++|++++.|+.  +||+.+++......+
T Consensus       969 ~sp~g~~l~~g~~~----g~i~i~d~~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A          969 LSPHLEYVAFGDED----GAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp             ECTTSSEEEEEETT----SCCEEEETTTT-SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred             EcCCCCEEEEEcCC----CCEEEEEcCCC-ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence            44555555444433    37777777666 667788899999999999999999999999999  699999999888899


Q ss_pred             CCcEEEEEEcCC-EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          213 VGEVYSMVVANE-MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       213 ~~~v~~l~~~~~-~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      ...|.++.++++ .+++++.+                  +|...|.+++|+  +.+|++++.|++|++||+.+++++..+
T Consensus      1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A         1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp             SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC
T ss_pred             CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee
Confidence            999999999998 77777766                  588999999997  678999999999999999999999999


Q ss_pred             cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEe---------ecccCCcceEEEEeeECCCCCcEEEEEeC
Q 016134          272 NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAA---------YTHKEDNGVLALGGLNDPDGKPVLICACN  340 (394)
Q Consensus       272 ~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~g~~~l~sgs~  340 (394)
                      .+|...|++++|+  +++|++++.|+.|++||+.+++.+..+         ..+...+..+    .|+|+++ +|++++ 
T Consensus      1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l----~fs~dg~-~l~s~~- 1197 (1249)
T 3sfz_A         1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV----CFSPDSK-TLVSAG- 1197 (1249)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE----EECTTSS-CEEEES-
T ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE----EECCCCC-EEEECC-
Confidence            9999999999998  789999999999999999988766554         2233333333    4699999 777775 


Q ss_pred             CCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          341 DNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                       |.|++||+.+++.+..+.. ...|.+++|+|++ +|++++.||.|++|++.
T Consensus      1198 -g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1198 -GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             -SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             -CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence             8999999999988777654 6679999999999 99999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=3.9e-29  Score=257.16  Aligned_cols=241  Identities=18%  Similarity=0.261  Sum_probs=197.3

Q ss_pred             cCCCCccceeeeccccccc-cccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccCCCeEEEEecCCCCEEEEEeCC
Q 016134          121 DESGDKSTSKKTTLKNVCC-HWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD  195 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D  195 (394)
                      ...||...|++++ +++.. .++++++.++    +|++|++.+.    ......+.+|...|.+++|+|++++|+||+.|
T Consensus       377 ~l~~H~~~V~~v~-~~~~~~~~l~s~s~D~----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          377 TMRAHTDMVTAIA-TPIDNADIIVSASRDK----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEECCSSCEEEEE-CCTTCCSEEEEEETTS----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hcccCCceeEEEE-ecCCCCCEEEEEeCCC----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            3568999999999 88754 6777666665    9999998653    24567899999999999999999999999999


Q ss_pred             Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          196 GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       196 g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      ++  |||+.++....                     ...+|...|.+++|+  +++|++++.|++|+|||+.........
T Consensus       452 g~v~vwd~~~~~~~~---------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          452 GELRLWDLAAGVSTR---------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             SEEEEEETTTTEEEE---------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             CcEEEEECCCCccee---------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            99  69999887653                     112678888888887  678999999999999998754333222


Q ss_pred             ---cCCCCCcEEEEEc--C--CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeE
Q 016134          272 ---NDHTDAPMSLLCW--D--QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTV  344 (394)
Q Consensus       272 ---~~h~~~v~~l~~~--~--~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I  344 (394)
                         .+|...|.++.|+  +  ..|++++.|++|++||+++.+....+..|...+..+    .|+|+++ +|++++.|++|
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v----~~spdg~-~l~sg~~Dg~i  585 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV----AVSPDGS-LCASGGKDGVV  585 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE----EECTTSS-EEEEEETTSBC
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE----EEeCCCC-EEEEEeCCCeE
Confidence               4688899999998  2  589999999999999999988888777776543333    4699998 99999999999


Q ss_pred             EEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          345 HLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       345 ~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +|||+++++.+..+.....|.+++|+|++.+++++.|+.|+|||+.+.
T Consensus       586 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          586 LLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK  633 (694)
T ss_dssp             EEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC
Confidence            999999998887777778899999999994445556777999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=7.5e-30  Score=235.40  Aligned_cols=249  Identities=16%  Similarity=0.168  Sum_probs=183.2

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--cccccCCCeecCCCCC
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--CCHWLLGNCVRGDECR  153 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~  153 (394)
                      .++++  ++.++++||.|++++|||+++....-.          ....||...|.++. |++  .+.++++++.++    
T Consensus        15 ~~~s~--~g~~las~s~D~~v~iw~~~~~~~~~~----------~~l~gH~~~V~~v~-~s~~~~g~~l~s~s~D~----   77 (297)
T 2pm7_B           15 AVMDY--YGKRMATCSSDKTIKIFEVEGETHKLI----------DTLTGHEGPVWRVD-WAHPKFGTILASCSYDG----   77 (297)
T ss_dssp             EEECT--TSSEEEEEETTSCEEEEEBCSSCBCCC----------EEECCCSSCEEEEE-ECCGGGCSEEEEEETTT----
T ss_pred             EEECC--CCCEEEEEeCCCEEEEEecCCCCcEEE----------EEEccccCCeEEEE-ecCCCcCCEEEEEcCCC----
Confidence            34555  788999999999999999975432111          14578999999999 865  377888777666    


Q ss_pred             eEEEEEcCCCc-eEEEEecccCCCeEEEEecCC--CCEEEEEeCCCc--eeecCCCc---EEEecCCCCcEEEEEEcCCE
Q 016134          154 FLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGT--AWNIESSA---EFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       154 ~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~--vWd~~~~~---~~~~~~~~~~v~~l~~~~~~  225 (394)
                      +|++||+.++. ..+..+.+|...|.+++|+|+  +.+|++++.|+.  +||++++.   ...+..|...|.+++|+|+.
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            99999998652 466778899999999999997  899999999998  69998763   23455666666666666541


Q ss_pred             EEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCcEEEEEcC-----CEEEEEeCCCc
Q 016134          226 LFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE----PVMTLNDHTDAPMSLLCWD-----QFLLSCSLDHT  296 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~~-----~~l~s~s~Dg~  296 (394)
                      ....  ..+.     ..-.+.+|++|+.|++|+|||+++++    ++.++.+|...|.+++|+.     .+|++++.|++
T Consensus       158 ~~~~--~~~~-----~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          158 IEED--GEHN-----GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             -------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             cccc--ccCC-----CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            1000  0000     00014689999999999999998766    6678899999999999983     58999999999


Q ss_pred             EEEEEeCCCce--e-eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          297 IKVWFATGRGN--L-EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       297 i~vwd~~~~~~--~-~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      |++||++....  . ..+........+  ..+.|+|+++ +|++++.|++|+||+...
T Consensus       231 v~iWd~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~g~-~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLKEEKFPDVL--WRASWSLSGN-VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCE--EEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred             EEEEEeCCCCCccceeeeecccCCCcE--EEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence            99999986431  1 122111112223  3445899999 899999999999999873

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=2.7e-29  Score=241.79  Aligned_cols=254  Identities=15%  Similarity=0.142  Sum_probs=205.9

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE  206 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~  206 (394)
                      ++.++ |+|++.++++++.++    .|++||..+. +....+..| ..+....|++++++|++++.|+.  |||+++++.
T Consensus        59 ~~~~~-~s~~g~~l~~~~~d~----~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           59 GKGNT-FEKVGSHLYKARLDG----HDFLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CTTCE-EEEEETTEEEEEETT----EEEEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred             cccee-eeecCCeEEEEEcCC----cEEEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence            44566 999999999888876    9999999775 445555556 44555678999999999999998  699999888


Q ss_pred             EEe-cCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCC
Q 016134          207 FSL-DGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       207 ~~~-~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~  263 (394)
                      ... ..|...|.+++|+|+  .+++++.+                  +|...|.+++|+  +++|++++.|++|++||++
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            755 689999999999988  78888876                  699999999997  6789999999999999999


Q ss_pred             CCceeEEEcC---CCCCcEEEEE---------------------c--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          264 TLEPVMTLND---HTDAPMSLLC---------------------W--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       264 ~~~~~~~~~~---h~~~v~~l~~---------------------~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      +++++..+..   |...|.++.+                     +  +++|++++.|+.|++||+++++.+..+.... .
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~  290 (420)
T 3vl1_A          212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-T  290 (420)
T ss_dssp             TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT-S
T ss_pred             CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc-C
Confidence            9999998875   4556666665                     3  5699999999999999999887776664421 1


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-eEEEe--cCCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-RGRIF--SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-~~~~~--~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.  ++.|+|++..+|++++.|+.|++||+++++. +..+.  +...|.++.+.+..+|++++.|+.|++|++...
T Consensus       291 ~~v~--~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          291 CSCN--SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             SCEE--EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCce--eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            2333  3347999877899999999999999998754 44444  356788886653339999999999999998763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=239.15  Aligned_cols=258  Identities=12%  Similarity=0.150  Sum_probs=206.0

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc----------eEEEEecccC------------CCeEEEE
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL----------TMLAKLEGHE------------KAVSGIA  181 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~----------~~~~~l~~h~------------~~V~~l~  181 (394)
                      .+...|.+++ |+|++.++++++.+|    .|+|||+.++.          +++..+.+|.            ..|++++
T Consensus        26 ~~~~~V~~v~-~s~~g~~la~g~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVE-FNHSGELLATGDKGG----RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEE-ECSSSSEEEEEETTS----EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEE-ECCCCCEEEEEcCCC----eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            3456899999 999999999877766    99999998653          2688999998            8899999


Q ss_pred             ecCCC--CEEEEEeCCCc--eeecCCCcEE-----------------------------------------EecCCCCcE
Q 016134          182 LPLRS--DKLFSGSRDGT--AWNIESSAEF-----------------------------------------SLDGPVGEV  216 (394)
Q Consensus       182 ~s~~~--~~l~sgs~Dg~--vWd~~~~~~~-----------------------------------------~~~~~~~~v  216 (394)
                      |+|++  .+|++++.|+.  +||+.++...                                         ...+|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99998  89999999999  6998764431                                         135789999


Q ss_pred             EEEEEcCC--EEEEEecC--------------------------CCCCCEEEEEec--C-CeEEEEeCCCeEEEEeCCCC
Q 016134          217 YSMVVANE--MLFAGAQD--------------------------GHTRPVTCLAVG--R-SRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       217 ~~l~~~~~--~l~~~~~~--------------------------~h~~~V~~l~~~--~-~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      .+++|+++  .++++ .|                          +|...|.+++|+  + ++|++|+.|+.|++||++++
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            99999998  67666 44                          477889999998  4 78999999999999999998


Q ss_pred             ce----eEEEcCCCC------------CcEEEEEc--CCEEEEEeCCCcEEEEEeCC-CceeeEeecccCCcceE-----
Q 016134          266 EP----VMTLNDHTD------------APMSLLCW--DQFLLSCSLDHTIKVWFATG-RGNLEAAYTHKEDNGVL-----  321 (394)
Q Consensus       266 ~~----~~~~~~h~~------------~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~-----  321 (394)
                      +.    +..+..|..            .|.+++|+  +++|++++. +.|++||++. ++.+..+..|......+     
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence            87    788888876            89999999  789999998 9999999987 77777776664322100     


Q ss_pred             ------EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---------------------------------CC
Q 016134          322 ------ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---------------------------------KH  362 (394)
Q Consensus       322 ------~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------------------------------~~  362 (394)
                            .+.++|+|+++ +|++++.|+.|+|||+.+++.+....+                                 ..
T Consensus       339 ~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK  417 (447)
T ss_dssp             TSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred             ccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence                  01234699999 899999999999999998876532211                                 34


Q ss_pred             cEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          363 EVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       363 ~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .|..++|+|++ +|++++.++ +.+|.-.
T Consensus       418 ~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          418 KILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             ceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            58899999999 888888776 7777643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.2e-30  Score=242.08  Aligned_cols=230  Identities=14%  Similarity=0.074  Sum_probs=177.4

Q ss_pred             cceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC
Q 016134          127 STSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES  203 (394)
Q Consensus       127 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~  203 (394)
                      ..|.+++ ++|++.++++++.++    .|++||+.++. +++..+.+|...|++++|+|++++|++++.|+.  |||+++
T Consensus        12 ~~v~~~~-~s~~g~~l~~~~~d~----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C           12 KPSYEHA-FNSQRTEFVTTTATN----QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             SCCSCCE-ECSSSSEEECCCSSS----CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             CcEEEEE-ECCCCCEEEEecCCC----EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4688888 999999998776665    99999998764 678889999999999999999999999999998  699988


Q ss_pred             Cc----EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc---eeEEEcC-
Q 016134          204 SA----EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE---PVMTLND-  273 (394)
Q Consensus       204 ~~----~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~---~~~~~~~-  273 (394)
                      ++    ...+                      .+|...|.+++|+  +++|++++.|+.|++||+++++   +...+.. 
T Consensus        87 ~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           87 DGTWKQTLVL----------------------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             --CCCCEEEC----------------------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CCceeeeeEe----------------------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            76    2222                      2677888888886  6789999999999999999877   4778887 


Q ss_pred             CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCC------------------ceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          274 HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGR------------------GNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       274 h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      |...|.+++|+  +++|++++.|+.|++||++..                  +.+..+ .|..  .+.  ++.|+|+++ 
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~--~~~~sp~~~-  218 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG--WVH--AVGFSPSGN-  218 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS--SEE--EEEECTTSS-
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc--eEE--EEEECCCCC-
Confidence            99999999998  789999999999999999632                  222222 3332  233  335799999 


Q ss_pred             EEEEEeCCCeEEEEECCCCce----eEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          334 VLICACNDNTVHLYELPSFME----RGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~~~~----~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +|++++.|+.|+|||+.+++.    +..+.. ...|.+++|+|++ +|++++.|+.+ +|+..
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            899999999999999999876    444443 6679999999999 88887766655 77665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=8.7e-28  Score=234.73  Aligned_cols=235  Identities=21%  Similarity=0.294  Sum_probs=195.1

Q ss_pred             CCCCccce-eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          122 ESGDKSTS-KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       122 ~~g~~~~v-~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ..||...+ .++.   +++.++++++.+|    .|++||+.++ +.+..+.+|.+.|++++|++++ +|++|+.|++  +
T Consensus       117 l~~h~~~v~~~~~---~~~~~l~sgs~dg----~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v  187 (464)
T 3v7d_B          117 LRGHMTSVITCLQ---FEDNYVITGADDK----MIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV  187 (464)
T ss_dssp             EECCSSSCEEEEE---EETTEEEEEETTS----CEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred             EcCCCCCcEEEEE---ECCCEEEEEcCCC----cEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence            45666554 4443   4566777666655    9999999887 8899999999999999999988 9999999999  6


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCc--------
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLE--------  266 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~--------  266 (394)
                      ||+++++....                     ..+|...|.+++|.    +.+|++++.|++|++||+++.+        
T Consensus       188 wd~~~~~~~~~---------------------~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          188 WDIKKGCCTHV---------------------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             EETTTTEEEEE---------------------ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred             EECCCCcEEEE---------------------ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence            99999876531                     22577777777775    4689999999999999998765        


Q ss_pred             ---------------eeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCC
Q 016134          267 ---------------PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDG  331 (394)
Q Consensus       267 ---------------~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  331 (394)
                                     .+..+.+|...|.++...+++|++++.|+.|++||+++.+.+..+..|......+    .|+|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~----~~~~~~  322 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST----IYDHER  322 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE----EEETTT
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEE----EEcCCC
Confidence                           2556788999999998889999999999999999999998888887766543333    368999


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          332 KPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       332 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      + +|++++.|+.|++||+++++.+..+.. ...|.+++|++ .+|++++.||.|++||+.+.
T Consensus       323 ~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          323 K-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTC
T ss_pred             C-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCC
Confidence            8 899999999999999999998888765 67799999984 39999999999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.6e-28  Score=229.43  Aligned_cols=240  Identities=13%  Similarity=0.098  Sum_probs=195.6

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--eEEEEecccCCCeEEEEecCCCC-EEEEEeCCCc-
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL--TMLAKLEGHEKAVSGIALPLRSD-KLFSGSRDGT-  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~--~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~-  197 (394)
                      ..+|...|.+++ |+|++.++++++.++    .|++|++.++.  .....+.+|...|++++|+|+++ +|++++.|+. 
T Consensus         7 ~~~h~~~v~~~~-~s~~~~~l~~~~~d~----~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            7 EQAPKDYISDIK-IIPSKSLLLITSWDG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             SSCCSSCEEEEE-EEGGGTEEEEEETTS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             ccCCCCcEEEEE-EcCCCCEEEEEcCCC----eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            457888999999 999999998777665    99999997653  24556679999999999999999 9999999999 


Q ss_pred             -eeec-CCCcEEEecCCCCcEEEEEEcCCEEEEEecCC--CCCCEEEEEec-CCeEEEEeCCCeEEEEeCCC--------
Q 016134          198 -AWNI-ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG--HTRPVTCLAVG-RSRLCSGSMDNTIRVWELDT--------  264 (394)
Q Consensus       198 -vWd~-~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~--h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~--------  264 (394)
                       +||+ ++++...+.                      +  |...|.+++|+ +++|++++.|+.|++||+++        
T Consensus        82 ~~wd~~~~~~~~~~~----------------------~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           82 LKVDLIGSPSFQALT----------------------NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEECSSSSSSEEECB----------------------SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EEEEeccCCceEecc----------------------ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccc
Confidence             6999 887764433                      4  77888888887 78999999999999999987        


Q ss_pred             -CceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCC-CceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeCC
Q 016134          265 -LEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATG-RGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACND  341 (394)
Q Consensus       265 -~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~d  341 (394)
                       ++++..+. |...|.+++|+++.|++++.|+.|++||++. ...............+.  ++.|+| +++ +|++++.|
T Consensus       140 ~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~--~i~~~~~~~~-~l~~~~~d  215 (342)
T 1yfq_A          140 KNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR--DVALLPKEQE-GYACSSID  215 (342)
T ss_dssp             EESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE--EEEECSGGGC-EEEEEETT
T ss_pred             cCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCcee--EEEECCCCCC-EEEEEecC
Confidence             77777776 8899999999977799999999999999987 54332222222222333  334799 888 89999999


Q ss_pred             CeEEEEECCCC------ceeEEEec-CC---------cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          342 NTVHLYELPSF------MERGRIFS-KH---------EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       342 g~I~iwd~~~~------~~~~~~~~-~~---------~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.|++|++...      +....+.. ..         .|.+++|+|++ +|++++.||.|++||+.+.
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence            99999999876      55555543 22         89999999999 9999999999999999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=6.3e-28  Score=251.64  Aligned_cols=260  Identities=18%  Similarity=0.293  Sum_probs=224.4

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..+|...|++++ |+|++.+++++..+|    .|+|||+.++ +.+..+.+|...|++++|+|++++|++++.|+.  ||
T Consensus         9 ~~~h~~~v~~i~-~sp~~~~la~~~~~g----~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            9 FSNRSDRVKGID-FHPTEPWVLTTLYSG----RVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEECSCEEEEE-ECSSSSEEEEEETTS----EEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eecCCCceEEEE-ECCCCCEEEEEeCCC----EEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            457778999999 999999999887665    9999999887 788999999999999999999999999999998  69


Q ss_pred             ecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEecC---CeEEEEeCC
Q 016134          200 NIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVGR---SRLCSGSMD  254 (394)
Q Consensus       200 d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~~---~~l~sgs~D  254 (394)
                      |+.+++.+ .+..|...|.+++|+|+  .+++++.+                   +|...|.+++|++   +.|++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            99999876 67789999999999998  78888766                   6889999999974   689999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCC-CCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134          255 NTIRVWELDTLEPVMTLNDHT-DAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~-~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      +.|++||+++++....+..+. ..+.+++|+    +.+|++++.|+.|++||+++++.+..+..+......+    .|+|
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~----~~~~  238 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA----VFHP  238 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE----EECS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE----EEcC
Confidence            999999999888887777655 889999995    6799999999999999999988888777665443333    4699


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          330 DGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++. +|++++.|+.|++||+.+++.+..+.. ...+.+++|+|++  .+++.+.|+.+.+|++...
T Consensus       239 ~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          239 TLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             SSS-EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             CCC-EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence            999 999999999999999999988887765 5789999999998  3455556777899987653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.8e-28  Score=237.23  Aligned_cols=257  Identities=19%  Similarity=0.216  Sum_probs=205.3

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR  153 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~  153 (394)
                      +.++|+.  .+  +++.+.|++|+|||++++.....-          ...+|...|++++ |+|++.++++++.+|    
T Consensus       109 ~~l~wS~--~n--~lAvgld~tV~lWd~~tg~~~~~~----------~~~~~~~~V~sv~-fspdg~~lasgs~Dg----  169 (420)
T 4gga_A          109 NLVDWSS--GN--VLAVALDNSVYLWSASSGDILQLL----------QMEQPGEYISSVA-WIKEGNYLAVGTSSA----  169 (420)
T ss_dssp             BCEEECT--TS--EEEEEETTEEEEEETTTCCEEEEE----------ECCSTTCCEEEEE-ECTTSSEEEEEETTS----
T ss_pred             eeEEECC--CC--EEEEEeCCEEEEEECCCCCEEEEE----------EecCCCCcEEEEE-ECCCCCEEEEEECCC----
Confidence            3456664  33  344456999999999998754311          2446777899999 999999999877666    


Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE--EecCCCCcEEEEEEcCC--EEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF--SLDGPVGEVYSMVVANE--MLF  227 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~  227 (394)
                      .|+|||+.++ +.+..+.+|...|.+++++  +.+|++|+.|+.  +||.......  .+.+|...+..+.+.++  .++
T Consensus       170 ~v~iWd~~~~-~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~  246 (420)
T 4gga_A          170 EVQLWDVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  246 (420)
T ss_dssp             CEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eEEEEEcCCC-cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeee
Confidence            9999999988 8899999999999998875  679999999999  5888765443  67889999999999987  777


Q ss_pred             EEecC----------------------CCCCCEEEEEec---CCeEEE--EeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134          228 AGAQD----------------------GHTRPVTCLAVG---RSRLCS--GSMDNTIRVWELDTLEPVMTLNDHTDAPMS  280 (394)
Q Consensus       228 ~~~~~----------------------~h~~~V~~l~~~---~~~l~s--gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~  280 (394)
                      ++..|                      .|...|.+++|+   ..++++  |+.|++|++||+++++++..+..| ..+.+
T Consensus       247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~  325 (420)
T 4gga_A          247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCS  325 (420)
T ss_dssp             EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEE
T ss_pred             eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceee
Confidence            77765                      578899999997   456655  458999999999999999988855 56788


Q ss_pred             EEEc--CCEEEEEe--CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          281 LLCW--DQFLLSCS--LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       281 l~~~--~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      +.|.  ++.+++++  .|+.|+|||+.+++.+..+..|...+..+    +|+|+|+ +|++|+.|++|+|||+....+..
T Consensus       326 ~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l----~~spdg~-~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          326 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL----TMSPDGA-TVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE----EECTTSS-CEEEEETTTEEEEECCSCSSCC-
T ss_pred             eeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEE----EEcCCCC-EEEEEecCCeEEEEECCCCCccc
Confidence            8887  67777665  79999999999999999988877544333    4699999 89999999999999998765444


Q ss_pred             EE
Q 016134          357 RI  358 (394)
Q Consensus       357 ~~  358 (394)
                      ..
T Consensus       401 ~~  402 (420)
T 4gga_A          401 RR  402 (420)
T ss_dssp             --
T ss_pred             hh
Confidence            33

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.2e-28  Score=226.21  Aligned_cols=261  Identities=12%  Similarity=0.125  Sum_probs=205.0

Q ss_pred             cCCCCccceeeecccccc---ccccCCCeecCCCCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCCCCEEEEEeCCC
Q 016134          121 DESGDKSTSKKTTLKNVC---CHWLLGNCVRGDECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG  196 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~---~~~~~~~~~~g~~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg  196 (394)
                      ...+|...|.+++ |+|+   +.++++++.+|    .|++||+.+ +......+.+|...|++++|+|++++|++++.|+
T Consensus        34 ~~~~h~~~v~~~~-~~~~~~~g~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           34 VTSSPDDSIGCLS-FSPPTLPGNFLIAGSWAN----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             CSSCCSSCEEEEE-ECCTTSSSEEEEEEETTS----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eccCCCCceEEEE-EcCCCCCceEEEEECCCC----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            4568888999999 9998   59998877766    999999987 5455588999999999999999999999999999


Q ss_pred             c--eeecCCCcEEEecCCCCcEEEEEE--cCC--EEEEEecC-----------------CCCCCEEEEEecCCeEEEEeC
Q 016134          197 T--AWNIESSAEFSLDGPVGEVYSMVV--ANE--MLFAGAQD-----------------GHTRPVTCLAVGRSRLCSGSM  253 (394)
Q Consensus       197 ~--vWd~~~~~~~~~~~~~~~v~~l~~--~~~--~l~~~~~~-----------------~h~~~V~~l~~~~~~l~sgs~  253 (394)
                      .  +||+++++...+..|...|.+++|  +++  .+++++.+                 .....+.++.+....+++++.
T Consensus       109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA  188 (368)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred             cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence            8  699999998888889999999999  666  67777766                 123456667777788888999


Q ss_pred             CCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc--CC----EEEEEeCCCcEEEEEeCCC---ceeeEeecccCCc----
Q 016134          254 DNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW--DQ----FLLSCSLDHTIKVWFATGR---GNLEAAYTHKEDN----  318 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~----~l~s~s~Dg~i~vwd~~~~---~~~~~~~~~~~~~----  318 (394)
                      |+.+++||++.........  .+...+.++.+.  ..    .+++++.|+.|++||++..   ..+..+..+....    
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence            9999999998755433322  233344444443  33    3999999999999999876   3445555444311    


Q ss_pred             ------ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          319 ------GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       319 ------~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                            .+.  ++.|+|+++ +|++++.|+.|+|||+.+++.+..+.. ...|++++|+|++ +|++++.|+..+.|++
T Consensus       269 ~~~~~~~v~--~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          269 APQDIYAVN--GIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CCEEECCEE--EEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             ccccccceE--EEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence                  233  345799998 899999999999999999988877765 6789999999999 9999999886555543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.1e-28  Score=231.98  Aligned_cols=239  Identities=15%  Similarity=0.171  Sum_probs=189.9

Q ss_pred             cCCCCccceeeeccccccc-cccCCCeecCCCCCeEEEEEcCCCceEEEEe--cccCCCeEEEEecC-CCCEEEEEeCCC
Q 016134          121 DESGDKSTSKKTTLKNVCC-HWLLGNCVRGDECRFLHSWFCGEGLTMLAKL--EGHEKAVSGIALPL-RSDKLFSGSRDG  196 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l--~~h~~~V~~l~~s~-~~~~l~sgs~Dg  196 (394)
                      ...+|...|.++. |+|++ .++++++.+|    .|+|||+.++ +....+  .+|...|.+++|+| ++++|++++.|+
T Consensus        68 ~~~~h~~~v~~~~-~~~~~~~~l~s~~~dg----~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           68 TASPFDRRVTSLE-WHPTHPTTVAVGSKGG----DIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EECCCSSCEEEEE-ECSSCTTEEEEEEBTS----CEEEEETTST-TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             eccCCCCCEEEEE-ECCCCCCEEEEEcCCC----eEEEEeCCCc-ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3467888999999 99998 8888887766    9999999866 333444  47999999999999 789999999999


Q ss_pred             c--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134          197 T--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN  272 (394)
Q Consensus       197 ~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  272 (394)
                      .  +||+++.....+..+.                   .|...|.+++|+  +.+|++++.|+.|++||+ +++++..+.
T Consensus       142 ~i~iwd~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  201 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTD-------------------SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK  201 (383)
T ss_dssp             EEEEEETTSCEEEEEECCC-------------------CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             EEEEEECCCCceEEEeccC-------------------CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec
Confidence            8  6999875444433222                   556788888887  689999999999999999 578899999


Q ss_pred             CCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCC----CceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeE
Q 016134          273 DHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATG----RGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTV  344 (394)
Q Consensus       273 ~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I  344 (394)
                      .|...|.+++|+  ++ +|++++.|+.|++||+++    ...+..+ .+..  .+.+  +.|+| ++. +|++++.|+.|
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~--~v~~--~~~s~~~~~-~l~~~~~d~~i  275 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK--PVNA--AYFNPTDST-KLLTTDQRNEI  275 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS--CEEE--EEECTTTSC-EEEEEESSSEE
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC--ceEE--EEEcCCCCC-EEEEEcCCCcE
Confidence            999999999999  55 999999999999999987    4444443 3433  3333  34699 888 89999999999


Q ss_pred             EEEECCCCceeEEEec------------------CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          345 HLYELPSFMERGRIFS------------------KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       345 ~iwd~~~~~~~~~~~~------------------~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++||+++++....+..                  ...+..++|+|++.+ +++.|+.|++||+.+.
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSG  340 (383)
T ss_dssp             EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTC
T ss_pred             EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCC
Confidence            9999998876555542                  134555777777733 7889999999999764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-27  Score=218.04  Aligned_cols=223  Identities=24%  Similarity=0.310  Sum_probs=190.2

Q ss_pred             EcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-
Q 016134          159 FCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-  232 (394)
Q Consensus       159 d~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-  232 (394)
                      |..++.++..++.+|.+.|++++| +++++|++++.|+.  +||+++++.. .+..+...|.+++|+++  .+++++.+ 
T Consensus         3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            445667899999999999999999 99999999999998  6999888766 56778999999999998  78887766 


Q ss_pred             --------------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc---CCEEE
Q 016134          233 --------------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLL  289 (394)
Q Consensus       233 --------------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~  289 (394)
                                          +|...|.++.|++++|++++.|+.|++||  .++.+..+..|...+.++.+.   +++|+
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence                                58899999999999999999999999999  678888899999999999986   78999


Q ss_pred             EEeCCCcEEEEEeCCCceeeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEE
Q 016134          290 SCSLDHTIKVWFATGRGNLEAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVI  367 (394)
Q Consensus       290 s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l  367 (394)
                      +++.|+.|++||.  .+....+.. +..  .+.++  .++|++.  |++++.|+.|++||+++++.+..+.. ...|+++
T Consensus       160 ~~~~d~~i~i~d~--~~~~~~~~~~~~~--~i~~~--~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  231 (313)
T 3odt_A          160 TASADKTIKLWQN--DKVIKTFSGIHND--VVRHL--AVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI  231 (313)
T ss_dssp             EEETTSCEEEEET--TEEEEEECSSCSS--CEEEE--EEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEECCCCEEEEec--CceEEEEeccCcc--cEEEE--EEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE
Confidence            9999999999993  344444443 332  23333  3578876  78899999999999999988888764 7789999


Q ss_pred             EECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          368 EIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       368 ~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +|+|++.|++++.|+.|++||+.+.
T Consensus       232 ~~~~~~~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          232 KLLPNGDIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EECTTSCEEEEETTSEEEEECTTTC
T ss_pred             EEecCCCEEEEecCCEEEEEECCCC
Confidence            9999999999999999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-28  Score=231.10  Aligned_cols=256  Identities=12%  Similarity=0.085  Sum_probs=192.4

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC-
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-  161 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-  161 (394)
                      ++..+++|+.|++|++||++++......           .   ...|.++. +.|.       .++++.|++|++|+.. 
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~-----------~---~~~v~~~~-~~~~-------~~s~s~D~~i~~w~~~~  104 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTI-----------T---TPNPRTGG-EHPA-------IISRGPCNRLLLLYPGN  104 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEE-----------E---EECCCTTC-CCCS-------EEEECSTTEEEEEETTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEE-----------e---cCCceeee-eCCc-------eEEecCCCeEEEEEccC
Confidence            7778999999999999999987753211           0   23455555 6665       5566777799999765 


Q ss_pred             --------CCceEEEEe-cccCCCeEEEEecC--CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          162 --------EGLTMLAKL-EGHEKAVSGIALPL--RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       162 --------~~~~~~~~l-~~h~~~V~~l~~s~--~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                              ++ +.++.+ .+|.+.|.+++|+|  ++++|++++.|+.  +||+++++......                 
T Consensus       105 ~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----------------  166 (343)
T 3lrv_A          105 QITILDSKTN-KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-----------------  166 (343)
T ss_dssp             EEEEEETTTC-CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-----------------
T ss_pred             ceEEeecCCc-ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------------
Confidence                    33 323333 47889999999999  9999999999999  69999988754321                 


Q ss_pred             EecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCcee-EEEcC-CCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134          229 GAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPV-MTLND-HTDAPMSLLCW--DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~-~~~~~-h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~  302 (394)
                         ..|...|.+++|+  +.+|++|+.|+.|+|||+++++.+ ..+.. |...|.+++|+  +.+|++++ |+.|++||+
T Consensus       167 ---~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~  242 (343)
T 3lrv_A          167 ---AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL  242 (343)
T ss_dssp             ---CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred             ---cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence               1344567788886  678999999999999999999987 88888 99999999998  78999999 459999999


Q ss_pred             CCCceeeEeeccc---CCcceEEEEeeECCCCCcEEEEEeC-CCeEEEEECCCCceeEEEecCCcEEEEEECC---CC-E
Q 016134          303 TGRGNLEAAYTHK---EDNGVLALGGLNDPDGKPVLICACN-DNTVHLYELPSFMERGRIFSKHEVRVIEIGP---DK-L  374 (394)
Q Consensus       303 ~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp---~~-~  374 (394)
                      ++.+.+..+..+.   .....  .++.|+|+++ +|++++. |+.|+||++.........   .++..++|.+   +. .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  316 (343)
T 3lrv_A          243 RKDVGTLAYPTYTIPEFKTGT--VTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTD  316 (343)
T ss_dssp             TSSTTCBSSCCCBC-----CC--EEEEECTTSS-EEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCE
T ss_pred             CCCCcceeecccccccccccc--eEEEECCCCC-EEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccce
Confidence            9887665544321   11221  2345799999 8888887 999999999766543333   5677888888   66 8


Q ss_pred             EEEEeCCCeEEEEe
Q 016134          375 FFTGDGAGMLGVWK  388 (394)
Q Consensus       375 l~tgs~Dg~I~vWd  388 (394)
                      |++++.|+.+.++-
T Consensus       317 l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          317 MDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             eEEEecCCceEEEE
Confidence            88899999888874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.7e-29  Score=235.10  Aligned_cols=251  Identities=17%  Similarity=0.175  Sum_probs=183.1

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--cccccCCCeecCCCCC
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--CCHWLLGNCVRGDECR  153 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~  153 (394)
                      .++++  ++..+++||.|++++|||++++....          .....||...|.+++ |++  .+.++++++.++    
T Consensus        19 v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~----------~~~l~gH~~~V~~v~-~~~~~~~~~l~s~s~D~----   81 (316)
T 3bg1_A           19 AQMDY--YGTRLATCSSDRSVKIFDVRNGGQIL----------IADLRGHEGPVWQVA-WAHPMYGNILASCSYDR----   81 (316)
T ss_dssp             EEECG--GGCEEEEEETTTEEEEEEEETTEEEE----------EEEEECCSSCEEEEE-ECCGGGSSCEEEEETTS----
T ss_pred             eeEcC--CCCEEEEEeCCCeEEEEEecCCCcEE----------EEEEcCCCccEEEEE-eCCCCCCCEEEEEECCC----
Confidence            44555  78899999999999999998764211          013568888999999 864  477888776665    


Q ss_pred             eEEEEEcCCC-ceEEEEecccCCCeEEEEecCC--CCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCC
Q 016134          154 FLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANE  224 (394)
Q Consensus       154 ~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~  224 (394)
                      +|++||+.++ .+.+..+.+|...|++++|+|+  +.+|++++.|+.  +||++.+...    .+..|...|.++.|+|+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            9999999875 2567788999999999999997  789999999999  6999876422    23456666777777665


Q ss_pred             EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCcEEEEEc--C----CEEEEEeCCC
Q 016134          225 MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL---EPVMTLNDHTDAPMSLLCW--D----QFLLSCSLDH  295 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~----~~l~s~s~Dg  295 (394)
                      ... +....+...-  ..-.+.+|++|+.|++|+|||++..   +++..+.+|...|.+++|+  +    .+|++++.|+
T Consensus       162 ~~~-~~~~~~~~~~--~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          162 VVP-GSLIDHPSGQ--KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             CCC-------CCSC--CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             cCC-cccccccccc--CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence            110 0000000000  0001368999999999999999754   4677889999999999998  2    6899999999


Q ss_pred             cEEEEEeCCCc----eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          296 TIKVWFATGRG----NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       296 ~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      +|++||++...    ....+..+..  .+.  .+.|+|++. +|++++.|++|+||+...
T Consensus       239 ~v~iw~~~~~~~~~~~~~~~~~~~~--~v~--~v~~sp~g~-~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          239 RVFIWTCDDASSNTWSPKLLHKFND--VVW--HVSWSITAN-ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEEECSSTTCCCCBCCEEEECSS--CEE--EEEECTTTC-CEEEEESSSCEEEEEECT
T ss_pred             eEEEEEccCccccchhhhhhhcCCC--cEE--EEEEcCCCC-EEEEEcCCCeEEEEEECC
Confidence            99999987621    1222333332  333  345799998 899999999999999763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.6e-27  Score=219.82  Aligned_cols=234  Identities=11%  Similarity=0.023  Sum_probs=173.2

Q ss_pred             eEEEEEcCCCc--eEEEEecccCC-------------------------CeEEEEecCC----CCEEEEEeCCCceeecC
Q 016134          154 FLHSWFCGEGL--TMLAKLEGHEK-------------------------AVSGIALPLR----SDKLFSGSRDGTAWNIE  202 (394)
Q Consensus       154 ~i~iWd~~~~~--~~~~~l~~h~~-------------------------~V~~l~~s~~----~~~l~sgs~Dg~vWd~~  202 (394)
                      .|++|+..++.  ++++++++|+.                         .|.+|+|+|+    ++.+++++.+..+|++.
T Consensus        64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~  143 (356)
T 2w18_A           64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLT  143 (356)
T ss_dssp             EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEET
T ss_pred             eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecC
Confidence            79999998763  78889988875                         4556667777    88888888777799999


Q ss_pred             CCcEEEe--cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-----CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134          203 SSAEFSL--DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-----RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       203 ~~~~~~~--~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-----~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      +++.+..  .+|...|..++++++--......+|...+..++|+     +.+|++++.|++|+|||++++++++++.+|.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            8888744  67999999999999722222333666666666664     4899999999999999999999999998754


Q ss_pred             ---CCcEEEEEc--CCEE------------EEEeCCCcEEEEEeCCCceeeEeecc-cCCcceEEEEeeECCCCCcEEEE
Q 016134          276 ---DAPMSLLCW--DQFL------------LSCSLDHTIKVWFATGRGNLEAAYTH-KEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       276 ---~~v~~l~~~--~~~l------------~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                         ..+.+++|+  +.++            ++|+.|++|++||..+++.+..+... ........+...+  ++. ++++
T Consensus       224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~-~lAS  300 (356)
T 2w18_A          224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDH-CAAA  300 (356)
T ss_dssp             ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETT-EEEE
T ss_pred             cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCC-EEEE
Confidence               357777777  5544            67889999999999988776654211 1011111222222  355 8999


Q ss_pred             EeCCCeEEEEECCCCceeEEEec-CCc-EEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          338 ACNDNTVHLYELPSFMERGRIFS-KHE-VRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       338 gs~dg~I~iwd~~~~~~~~~~~~-~~~-v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ++.|++|+|||+.+++.+.++.. ... +.+++|+||+ +|++|+.|++|+|||+.
T Consensus       301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            99999999999999999999874 333 4568999999 99999999999999963

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=6.3e-28  Score=225.45  Aligned_cols=264  Identities=14%  Similarity=0.029  Sum_probs=210.7

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccc-ccCCCeecCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH-WLLGNCVRGDEC  152 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~-~~~~~~~~g~~~  152 (394)
                      ...+|++  ++..+++++.|+++++|+++++......         ....+|...|.++. ++|++. ++++++.+|   
T Consensus        15 ~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~---------~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg---   79 (342)
T 1yfq_A           15 SDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDL---------LQSLRYKHPLLCCN-FIDNTDLQIYVGTVQG---   79 (342)
T ss_dssp             EEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEE---------EEEEECSSCEEEEE-EEESSSEEEEEEETTS---
T ss_pred             EEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccc---------eeeeecCCceEEEE-ECCCCCcEEEEEcCCC---
Confidence            3455666  7778999999999999999977621100         12347778999999 999999 888777665   


Q ss_pred             CeEEEEEc-CCCceEEEEecc--cCCCeEEEEecCCCCEEEEEeCCCc--eeecCC---------CcEEEecCCCCcEEE
Q 016134          153 RFLHSWFC-GEGLTMLAKLEG--HEKAVSGIALPLRSDKLFSGSRDGT--AWNIES---------SAEFSLDGPVGEVYS  218 (394)
Q Consensus       153 ~~i~iWd~-~~~~~~~~~l~~--h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~---------~~~~~~~~~~~~v~~  218 (394)
                       .|++||+ .++ + ...+.+  |...|.+++|+| +++|++++.|+.  +||+++         ++.+..         
T Consensus        80 -~i~~wd~~~~~-~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------  146 (342)
T 1yfq_A           80 -EILKVDLIGSP-S-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN---------  146 (342)
T ss_dssp             -CEEEECSSSSS-S-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS---------
T ss_pred             -eEEEEEeccCC-c-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE---------
Confidence             9999999 776 3 377888  999999999999 999999999998  699875         332211         


Q ss_pred             EEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCC-Cc--eeEEEcCCCCCcEEEEEc---CCEEEEEe
Q 016134          219 MVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDT-LE--PVMTLNDHTDAPMSLLCW---DQFLLSCS  292 (394)
Q Consensus       219 l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~-~~--~~~~~~~h~~~v~~l~~~---~~~l~s~s  292 (394)
                                  . .|...|.+++|+++.+++++.|+.|++||+++ ++  .......|...|.+++|+   +++|++++
T Consensus       147 ------------~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          147 ------------T-KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             ------------S-SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             ------------E-eeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence                        1 36778889999877799999999999999988 54  334455688899999997   57999999


Q ss_pred             CCCcEEEEEeCCC------ceeeEeecccC-------CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134          293 LDHTIKVWFATGR------GNLEAAYTHKE-------DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF  359 (394)
Q Consensus       293 ~Dg~i~vwd~~~~------~~~~~~~~~~~-------~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~  359 (394)
                      .|+.|++||++..      +....+..+..       ...+.  ++.|+|+++ +|++++.|+.|++||+.+++.+..+.
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~  290 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN--SIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE--EEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE--EEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhhh
Confidence            9999999999876      66666666543       11333  335799998 89999999999999999998887776


Q ss_pred             c--CCcEEEEEECCCC-EEEEEeCCCe
Q 016134          360 S--KHEVRVIEIGPDK-LFFTGDGAGM  383 (394)
Q Consensus       360 ~--~~~v~~l~~sp~~-~l~tgs~Dg~  383 (394)
                      .  ...|++++  |++ +|++++.||.
T Consensus       291 ~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          291 KFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cccCCCceEec--CCCCeEEEEecCCc
Confidence            4  56799999  888 9999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=4.6e-28  Score=235.41  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=182.3

Q ss_pred             CCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--
Q 016134          123 SGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--  197 (394)
Q Consensus       123 ~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--  197 (394)
                      .+|...|++++ |+|. ..+||+++.+|    .|+|||+.++. .....+.+|.+.|++|+|+| ++++|+|++.|++  
T Consensus       116 ~~~~~~V~~l~-~~P~~~~~lasGs~dg----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          116 APFDRRATSLA-WHPTHPSTVAVGSKGG----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             EECSSCEEEEE-ECSSCTTCEEEEETTS----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             CCCCCCEEEEE-EeCCCCCEEEEEeCCC----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            46677899999 9984 56777766666    99999997553 45566789999999999998 6899999999999  


Q ss_pred             eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134          198 AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       198 vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      |||++++....+..+                   +.+...+.+++|+  +.+|++|+.|+.|++||++ ++++..+.+|.
T Consensus       191 iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~  250 (435)
T 4e54_B          191 LQDFKGNILRVFASS-------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK  250 (435)
T ss_dssp             EEETTSCEEEEEECC-------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred             EeeccCCceeEEecc-------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence            699987655433221                   1445566777876  6799999999999999997 46677889999


Q ss_pred             CCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeeccc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          276 DAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       276 ~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      ..|.+++|+   ..+|++++.|+.|++||+++.+....+.... +...+.  +++|+|++. +|++++.|+.|+|||+.+
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~--~~~~spdg~-~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN--AACFSPDGA-RLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE--ECCBCTTSS-EEEEEESSSCEEEEESSS
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc--ceeECCCCC-eeEEEcCCCEEEEEECCC
Confidence            999999998   3489999999999999998766544432211 112233  345799999 899999999999999999


Q ss_pred             CceeEEEec-C------CcEEEEEECCCC-EEEEEe------------CCCeEEEEeCCCC
Q 016134          352 FMERGRIFS-K------HEVRVIEIGPDK-LFFTGD------------GAGMLGVWKLLAK  392 (394)
Q Consensus       352 ~~~~~~~~~-~------~~v~~l~~sp~~-~l~tgs------------~Dg~I~vWd~~~~  392 (394)
                      +.....+.. .      ..+..+.|+|++ +++++.            .++.|++||+.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g  388 (435)
T 4e54_B          328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG  388 (435)
T ss_dssp             SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred             CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence            877665542 1      123344566666 444443            3467999998764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.3e-27  Score=231.94  Aligned_cols=247  Identities=17%  Similarity=0.226  Sum_probs=194.6

Q ss_pred             CCCCccceeeecccccc-ccccCCCeecCCCCCeEEEEEcCCC---------ceEEEEecccCCCeEEEEecCCCC-EEE
Q 016134          122 ESGDKSTSKKTTLKNVC-CHWLLGNCVRGDECRFLHSWFCGEG---------LTMLAKLEGHEKAVSGIALPLRSD-KLF  190 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~i~iWd~~~~---------~~~~~~l~~h~~~V~~l~~s~~~~-~l~  190 (394)
                      ..+|...|..++ ++|. ..++++++.+|    .|++||+.+.         ..++..+.+|...|++|+|+|++. +|+
T Consensus       124 ~~~h~~~v~~l~-~~p~~~~~lat~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          124 KINHEGEVNRAR-YMPQNACVIATKTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEESSCCSEEE-EETTEEEEEEEECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEcCCCcEEEEE-ECCCCCcEEEEECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            346778899998 9986 67787766655    8999999752         477888999999999999999988 999


Q ss_pred             EEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC
Q 016134          191 SGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       191 sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      +++.||.  +||+..+....      .+.    .+    .....+|...|.+++|+   +.+|++++.|+.|++||+++.
T Consensus       199 s~~~dg~i~vwd~~~~~~~~------~~~----~~----~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEH------RVI----DA----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGG------GEE----EC----SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             EEeCCCeEEEEeCCCCCCCC------cee----cc----ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999  69998743210      000    00    00122788889999986   568999999999999999987


Q ss_pred             ---ceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCC-CceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          266 ---EPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATG-RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       266 ---~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                         +++..+..|...|.+++|+  +. +|++++.|+.|++||++. ...+..+..|...+.    ++.|+|+++.+|+++
T Consensus       265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~----~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPHNETILASS  340 (430)
T ss_dssp             CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEE----EEEECSSCTTEEEEE
T ss_pred             CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEE----EEEECCCCCCEEEEE
Confidence               5788888999999999998  44 799999999999999997 445666665654333    334699997789999


Q ss_pred             eCCCeEEEEECCCC--------------ceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          339 CNDNTVHLYELPSF--------------MERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       339 s~dg~I~iwd~~~~--------------~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      +.|+.|+|||+...              ..+..+.. ...|++++|+|++  +|++++.|+.|+||++..
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            99999999999872              33333332 5579999999998  899999999999999863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.7e-27  Score=226.45  Aligned_cols=251  Identities=21%  Similarity=0.274  Sum_probs=201.1

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG  163 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~  163 (394)
                      +..+++++.|+++++||++++.....           ...+|...|.+++ |+|++.++++++.+|    .|++||+.++
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~-----------~~~~~~~~v~~v~-~s~~~~~l~~~~~dg----~i~iwd~~~~  166 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSAL-----------AETDESTYVASVK-WSHDGSFLSVGLGNG----LVDIYDVESQ  166 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEE-----------EECCTTCCEEEEE-ECTTSSEEEEEETTS----CEEEEETTTC
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEe-----------eecCCCCCEEEEE-ECCCCCEEEEECCCC----eEEEEECcCC
Confidence            45688899999999999998875421           2334677899999 999999998877666    9999999887


Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC-CcE-EEecCCCCcEEEEEEcCC--EEEEEecC-----
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES-SAE-FSLDGPVGEVYSMVVANE--MLFAGAQD-----  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~-~~~-~~~~~~~~~v~~l~~~~~--~l~~~~~~-----  232 (394)
                       +.+..+.+|...|.+++|  ++++|++++.|+.  +||++. ... ..+..|...|.+++|+++  .+++++.+     
T Consensus       167 -~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~i  243 (401)
T 4aez_A          167 -TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI  243 (401)
T ss_dssp             -CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence             788899999999999999  5679999999999  699984 333 367789999999999988  78888776     


Q ss_pred             -------------CCCCCEEEEEec---CCeEEEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe
Q 016134          233 -------------GHTRPVTCLAVG---RSRLCSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS  292 (394)
Q Consensus       233 -------------~h~~~V~~l~~~---~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s  292 (394)
                                   .|...|.+++|+   ..++++++  .|+.|++||+++++++..+. +...|.+++|+  +.+|++++
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence                         688999999997   35677765  79999999999999999886 66789999998  78888854


Q ss_pred             --CCCcEEEEEeCCCceeeE--eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134          293 --LDHTIKVWFATGRGNLEA--AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF  359 (394)
Q Consensus       293 --~Dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~  359 (394)
                        .|+.|++||+.+++....  +..|......+    .|+|++. +|++++.|+.|++|++.+++.+....
T Consensus       323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~----~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS----ALSPDGR-ILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE----EECTTSS-EEEEECTTSEEEEEECCC--------
T ss_pred             ecCCCcEEEEecCCccceeEEEecCCCCCEEEE----EECCCCC-EEEEEeCCCcEEEEECCCCccccccc
Confidence              899999999998655544  33444433333    3699999 99999999999999999987765543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.6e-27  Score=227.42  Aligned_cols=226  Identities=21%  Similarity=0.264  Sum_probs=178.0

Q ss_pred             CCCCeEEEEEcCCCce---EEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcC
Q 016134          150 DECRFLHSWFCGEGLT---MLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVAN  223 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~---~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~  223 (394)
                      +.++.|+||++.+..+   .+..+.+|.+.|++++|+| ++++|++|+.|+.  |||+.++......  ...+.      
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~--~~~~~------  125 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--REPVI------  125 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB--CSCSE------
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc--CCceE------
Confidence            3455999999965422   3556789999999999999 9999999999998  6999887431100  00011      


Q ss_pred             CEEEEEecCCCCCCEEEEEec--C-CeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCcEEEEEc--CCEEEEEeCCCc
Q 016134          224 EMLFAGAQDGHTRPVTCLAVG--R-SRLCSGSMDNTIRVWELDTLEPVMTL--NDHTDAPMSLLCW--DQFLLSCSLDHT  296 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~--~-~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s~Dg~  296 (394)
                            ...+|...|.+++|+  + ++|++++.|+.|+|||+++++++..+  ..|...|.+++|+  +.+|++++.|+.
T Consensus       126 ------~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  199 (402)
T 2aq5_A          126 ------TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR  199 (402)
T ss_dssp             ------EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred             ------EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc
Confidence                  122788889999997  3 58999999999999999999999999  8899999999998  789999999999


Q ss_pred             EEEEEeCCCceeeEe-ecccCCcceEEEEeeECCCCCcEEEEE---eCCCeEEEEECCCCce-eE--EEecCCcEEEEEE
Q 016134          297 IKVWFATGRGNLEAA-YTHKEDNGVLALGGLNDPDGKPVLICA---CNDNTVHLYELPSFME-RG--RIFSKHEVRVIEI  369 (394)
Q Consensus       297 i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~~l~sg---s~dg~I~iwd~~~~~~-~~--~~~~~~~v~~l~~  369 (394)
                      |++||+++++.+..+ ..+... ....  +.|+|++. +|++|   +.|+.|++||+++.+. +.  .+.+...+.+++|
T Consensus       200 i~iwd~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          200 VRVIEPRKGTVVAEKDRPHEGT-RPVH--AVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             EEEEETTTTEEEEEEECSSCSS-SCCE--EEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred             EEEEeCCCCceeeeeccCCCCC-cceE--EEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence            999999998887777 444433 1222  23689988 88888   7899999999998764 22  2234667999999


Q ss_pred             CCCC-EEE-EEeCCCeEEEEeCCCCC
Q 016134          370 GPDK-LFF-TGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       370 sp~~-~l~-tgs~Dg~I~vWd~~~~~  393 (394)
                      +|++ +|+ +++.|+.|++||+.+..
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            9999 664 66689999999998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=3.7e-28  Score=231.93  Aligned_cols=251  Identities=17%  Similarity=0.183  Sum_probs=203.7

Q ss_pred             cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc----c---cccCCCeecCCCCCeEEE
Q 016134           85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC----C---HWLLGNCVRGDECRFLHS  157 (394)
Q Consensus        85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~----~---~~~~~~~~~g~~~~~i~i  157 (394)
                      ..+++++.|++|++||++++......      .......+|...|.++. |+++    +   .++++++.+|    .|++
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~h~~~v~~~~-~~~~~~~~g~~~~~l~s~~~dg----~i~i   95 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPK------DKSYSHFVHKSGLHHVD-VLQAIERDAFELCLVATTSFSG----DLLF   95 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGG------GGEEEEECCTTCEEEEE-EEEEEETTTEEEEEEEEEETTS----CEEE
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCC------CcceEEecCCCcEEEEE-EecccccCCccccEEEEEcCCC----CEEE
Confidence            67899999999999999987621100      01113447888999999 9999    8   8888777665    9999


Q ss_pred             EEcCCCceE-----EEEeccc-----CCCeEEEEec----CCCCE-EEEEeCCCc--eeecCC------CcEE------E
Q 016134          158 WFCGEGLTM-----LAKLEGH-----EKAVSGIALP----LRSDK-LFSGSRDGT--AWNIES------SAEF------S  208 (394)
Q Consensus       158 Wd~~~~~~~-----~~~l~~h-----~~~V~~l~~s----~~~~~-l~sgs~Dg~--vWd~~~------~~~~------~  208 (394)
                      ||+.++ +.     +..+..|     ...|.+++|+    |++++ |++++.|+.  +||+.+      ++.+      .
T Consensus        96 w~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (397)
T 1sq9_A           96 YRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE  174 (397)
T ss_dssp             EEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred             EEccCC-cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence            999766 33     7888888     5999999999    99999 999999998  699987      4332      3


Q ss_pred             e-------cCCCCcEEEEEEcCC-EEEEEecC------------------C---C---CCCEEEEEec--CCeEEEEeCC
Q 016134          209 L-------DGPVGEVYSMVVANE-MLFAGAQD------------------G---H---TRPVTCLAVG--RSRLCSGSMD  254 (394)
Q Consensus       209 ~-------~~~~~~v~~l~~~~~-~l~~~~~~------------------~---h---~~~V~~l~~~--~~~l~sgs~D  254 (394)
                      +       ..+...|.+++|+++ .+++++.+                  .   |   ...|.+++|+  +.+|++++.|
T Consensus       175 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          175 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             EEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             eeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence            3       447888999999988 77777766                  5   8   9999999997  7899999999


Q ss_pred             ---CeEEEEeCCCCceeEEEcC-------------CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee----
Q 016134          255 ---NTIRVWELDTLEPVMTLND-------------HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY----  312 (394)
Q Consensus       255 ---g~V~iwd~~~~~~~~~~~~-------------h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~----  312 (394)
                         +.|++||+++++++..+..             |...|.+++|+  +++|++++.|+.|++||+++.+.+..+.    
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  334 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD  334 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccC
Confidence               9999999999999999998             99999999998  7899999999999999999998888877    


Q ss_pred             --cc---------------cCCcceEEEEeeECCCC----------CcEEEEEeCCCeEEEEECCCC
Q 016134          313 --TH---------------KEDNGVLALGGLNDPDG----------KPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       313 --~~---------------~~~~~~~~~~~~~s~~g----------~~~l~sgs~dg~I~iwd~~~~  352 (394)
                        .+               ..  .+.  .+.|+|++          + +|++++.|+.|++|++.++
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~--~v~--~~~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          335 DIEIEEDILAVDEHGDSLAEP--GVF--DVKFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             GCSSGGGCCCBCTTSCBCSSC--CEE--EEEEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC-
T ss_pred             cccchhhhhccccccccccCC--cee--EEEeccccccccccccccc-eEEEecCCCcEEEEEcCCC
Confidence              44               32  233  33468888          5 8999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-27  Score=230.86  Aligned_cols=243  Identities=15%  Similarity=0.054  Sum_probs=187.2

Q ss_pred             CCccceeeecccccccccc-CCCeecCCCCCeEEEEEcC--CCceEEEEec--ccCCCeEEEEecCCCCEEEEEeCCCce
Q 016134          124 GDKSTSKKTTLKNVCCHWL-LGNCVRGDECRFLHSWFCG--EGLTMLAKLE--GHEKAVSGIALPLRSDKLFSGSRDGTA  198 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~-~~~~~~g~~~~~i~iWd~~--~~~~~~~~l~--~h~~~V~~l~~s~~~~~l~sgs~Dg~v  198 (394)
                      ++...|.+++ |+|++.++ ++++.+|    .|+|||+.  ++ +.+..+.  .|...|++++|+|++++|++++.|+.+
T Consensus       100 ~~~~~v~~~~-~s~d~~~l~~~~~~dg----~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v  173 (450)
T 2vdu_B          100 PIYSYIRNLR-LTSDESRLIACADSDK----SLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV  173 (450)
T ss_dssp             CCCCCEEEEE-ECTTSSEEEEEEGGGT----EEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccCCceEEEE-EcCCCCEEEEEECCCC----eEEEEECcCCCC-ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence            4455799999 99999996 7666555    99999998  55 5666665  677999999999999999999999984


Q ss_pred             --eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCC-----eEEEEeCCCeEEEEeCCCCceeEE-
Q 016134          199 --WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRS-----RLCSGSMDNTIRVWELDTLEPVMT-  270 (394)
Q Consensus       199 --Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~-----~l~sgs~Dg~V~iwd~~~~~~~~~-  270 (394)
                        |++.++........                 ...+|...|.+++|+++     +|++++.|++|++||+++++++.. 
T Consensus       174 ~~~~~~~~~~~~~~~~-----------------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQE-----------------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             EEEETTSCCCSSCCCC-----------------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred             EEEecCCcccccccce-----------------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence              77766553210000                 11167788888888743     899999999999999999998887 


Q ss_pred             EcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeeccc-----------------------CCcceEEEEee
Q 016134          271 LNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK-----------------------EDNGVLALGGL  326 (394)
Q Consensus       271 ~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~  326 (394)
                      +.+|...|.+++|+ +++|++++.|++|++||+++++.+..+..+.                       ....+.  .+.
T Consensus       237 ~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~  314 (450)
T 2vdu_B          237 LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS--KII  314 (450)
T ss_dssp             CCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE--EEE
T ss_pred             ecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE--EEE
Confidence            55899999999997 8899999999999999999988777765321                       111222  345


Q ss_pred             ECCCCCcEEEEEe-CCCeEEEEEC--CCC---ceeEEEecCCcEEEEEECCCCEEEEEeC-------CCeEEEEeCCCC
Q 016134          327 NDPDGKPVLICAC-NDNTVHLYEL--PSF---MERGRIFSKHEVRVIEIGPDKLFFTGDG-------AGMLGVWKLLAK  392 (394)
Q Consensus       327 ~s~~g~~~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~~~~v~~l~~sp~~~l~tgs~-------Dg~I~vWd~~~~  392 (394)
                      ++|+++ +|++++ .|+.|+||++  ...   ..+..+.....|.+++|+|++++++.+.       +..|.+|.+..+
T Consensus       315 ~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          315 KSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             ECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            789998 777777 8999999999  555   5555666567899999999775555433       556899987643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.2e-27  Score=225.52  Aligned_cols=237  Identities=8%  Similarity=-0.009  Sum_probs=179.1

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG  163 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~  163 (394)
                      ...|++++.|+++|+|++++....  .+...+. ......++...++.++ |+|++.+++.+  +++.|++|+|||+.++
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~v~-fSpDg~~la~a--s~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQ--LEFLTSV-DFDASTNADDYTKLVY-ISREGTVAAIA--SSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTE--EEEEEEE-CSSCCCCTTCCEEEEE-ECTTSSCEEEE--ESCSSCEEEEEETTTT
T ss_pred             ccEEEEecCCCcEEEEEecCCCce--EEEeeee-ceeecCCcccCEEEEE-EcCCCCEEEEE--ECCCCCEEEEeECCCC
Confidence            446788999999999998865421  0000000 0001223344678888 99999998743  3556779999999987


Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                       +++.++. |...|.+|+|+|++++|++++.++. +|+..+++.....                   ....|...|.+++
T Consensus       168 -~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~v~  226 (365)
T 4h5i_A          168 -TEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARK-------------------TDFDKNWSLSKIN  226 (365)
T ss_dssp             -EEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEE-------------------CCCCTTEEEEEEE
T ss_pred             -cEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeee-------------------ecCCCCCCEEEEE
Confidence             6677765 7889999999999999999998877 5887777665321                   1125677778888


Q ss_pred             ec--CCeEEEEeCCC----eEEEEeCCCCce----eEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          243 VG--RSRLCSGSMDN----TIRVWELDTLEP----VMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       243 ~~--~~~l~sgs~Dg----~V~iwd~~~~~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      |+  +.++++++.|+    .+++||+.....    ...+.+|...|++++|+  +++||+|+.|++|+|||+++++.+..
T Consensus       227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~  306 (365)
T 4h5i_A          227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI  306 (365)
T ss_dssp             EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE
Confidence            86  66788888887    688999876543    45677899999999998  88999999999999999999888877


Q ss_pred             e-ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          311 A-YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       311 ~-~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                      + ..|...+..    ++|+|||+ +||+++.|++|+|||++..
T Consensus       307 ~~~gH~~~V~~----v~fSpdg~-~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          307 FKQAHSFAITE----VTISPDST-YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ETTSSSSCEEE----EEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred             ecCcccCCEEE----EEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence            5 456544333    34699999 9999999999999999754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=9.2e-28  Score=225.89  Aligned_cols=237  Identities=17%  Similarity=0.241  Sum_probs=187.0

Q ss_pred             CCCCccceeeecccccc----ccccCCCeecCCCCCeEEEEEcCCCceEEEEecc-----cCCCeEEEEecCC----CCE
Q 016134          122 ESGDKSTSKKTTLKNVC----CHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG-----HEKAVSGIALPLR----SDK  188 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~----~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~-----h~~~V~~l~~s~~----~~~  188 (394)
                      ..||...|.+++ ++|.    ...+++++.++    .|++||+.++ +.+..+..     |...|++++|+|+    +++
T Consensus        14 ~~~h~~~v~~i~-~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   87 (366)
T 3k26_A           14 KEDHNQPLFGVQ-FNWHSKEGDPLVFATVGSN----RVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPL   87 (366)
T ss_dssp             ECTTCSCEEEEE-ECTTCCTTSCEEEEEEETT----EEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEE
T ss_pred             ecCCCCceEEEE-EecccCCCCceEEEECCCC----EEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCE
Confidence            448888999999 9984    44455555555    8999999865 34444443     6688999999998    679


Q ss_pred             EEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCC
Q 016134          189 LFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       189 l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~  263 (394)
                      |++++.|+.  +||+++++.+..                     ..+|...|.+++|+   +++|++++.|+.|++||++
T Consensus        88 l~~~~~dg~i~v~d~~~~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQCIKH---------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             EEEEETTCEEEEECTTTCCEEEE---------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EEEecCCCEEEEEEchhceEeee---------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            999999998  699998876531                     12577778888885   5789999999999999999


Q ss_pred             CCceeEEE---cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeec-------------------------
Q 016134          264 TLEPVMTL---NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYT-------------------------  313 (394)
Q Consensus       264 ~~~~~~~~---~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------------------------  313 (394)
                      +++.+..+   ..|...|.+++|+  +++|++++.|+.|++||+++.+....+..                         
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            99999988   6899999999998  78999999999999999987654433322                         


Q ss_pred             ---ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce--------------eEEEec-CCcEEEEEECCC--C
Q 016134          314 ---HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--------------RGRIFS-KHEVRVIEIGPD--K  373 (394)
Q Consensus       314 ---~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--------------~~~~~~-~~~v~~l~~sp~--~  373 (394)
                         +......+.    |+  ++ +|++++.|+.|++||+.+...              +..+.. ...|++++|+|+  +
T Consensus       227 ~~~~~~~v~~~~----~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (366)
T 3k26_A          227 RDIHRNYVDCVR----WL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ  299 (366)
T ss_dssp             CSSCSSCCCEEE----EE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred             ccCCcceEEEEE----Ec--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence               443333333    34  55 899999999999999987643              333333 567999999999  8


Q ss_pred             -EEEEEeCCCeEEEEeCCCC
Q 016134          374 -LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       374 -~l~tgs~Dg~I~vWd~~~~  392 (394)
                       +|++++.||.|++||+.+.
T Consensus       300 ~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          300 KMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             SEEEEECTTSCEEEEECCSS
T ss_pred             cEEEEEecCCcEEEEECCCC
Confidence             9999999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.5e-27  Score=219.31  Aligned_cols=252  Identities=13%  Similarity=0.144  Sum_probs=209.8

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .+|++  ++..+++++.|+.+++||++++....            ...+|...|.++. |+|++.++++++.+|    .|
T Consensus        38 ~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~------------~~~~h~~~v~~~~-~~~~~~~l~s~~~dg----~i   98 (369)
T 3zwl_B           38 VKYNK--EGDLLFSCSKDSSASVWYSLNGERLG------------TLDGHTGTIWSID-VDCFTKYCVTGSADY----SI   98 (369)
T ss_dssp             EEECT--TSCEEEEEESSSCEEEEETTTCCEEE------------EECCCSSCEEEEE-ECTTSSEEEEEETTT----EE
T ss_pred             EEEcC--CCCEEEEEeCCCEEEEEeCCCchhhh------------hhhhcCCcEEEEE-EcCCCCEEEEEeCCC----eE
Confidence            34444  77789999999999999998876532            3567888999999 999999998776665    99


Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-----Cc--eeecCCCcE------------EEecCCCC--
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-----GT--AWNIESSAE------------FSLDGPVG--  214 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-----g~--vWd~~~~~~------------~~~~~~~~--  214 (394)
                      ++||+.++ +.+..+. |...|.+++|+|++++|++++.+     +.  +||+.....            ..+..+..  
T Consensus        99 ~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B           99 KLWDVSNG-QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             EEEETTTC-CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             EEEECCCC-cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            99999887 6667776 89999999999999999999998     77  699876532            23344444  


Q ss_pred             cEEEEEEcCC--EEEEEecC-------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          215 EVYSMVVANE--MLFAGAQD-------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       215 ~v~~l~~~~~--~l~~~~~~-------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      .+.+++|+++  .+++++.+                   .|...|.+++|+  +.+|++++.|+.|++||+++++++..+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            8999999988  77777665                   688999999997  678999999999999999999999888


Q ss_pred             cCCCCCcEEEEEc--CCEEEEEeCCC--------------cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEE
Q 016134          272 NDHTDAPMSLLCW--DQFLLSCSLDH--------------TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVL  335 (394)
Q Consensus       272 ~~h~~~v~~l~~~--~~~l~s~s~Dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l  335 (394)
                      . +...+.++.|+  ++++++++.++              .+++||+.+.+.+..+..|...+..+    .|+|+++ +|
T Consensus       257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~----~~s~~~~-~l  330 (369)
T 3zwl_B          257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV----AISPQGT-SY  330 (369)
T ss_dssp             E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE----EECTTSS-EE
T ss_pred             c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE----EECCCCC-EE
Confidence            7 77889999998  78999999888              89999999998888887776544333    3699998 99


Q ss_pred             EEEeCCCeEEEEECCCCce
Q 016134          336 ICACNDNTVHLYELPSFME  354 (394)
Q Consensus       336 ~sgs~dg~I~iwd~~~~~~  354 (394)
                      ++++.|+.|+||+++.+..
T Consensus       331 ~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEEETTSEEEEEEECHHHH
T ss_pred             EEEcCCCeEEEEECccccc
Confidence            9999999999999987543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-27  Score=248.79  Aligned_cols=243  Identities=14%  Similarity=0.110  Sum_probs=192.9

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-CceEEEEecccCCCeEEEEecCC--CCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-GLTMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~  197 (394)
                      ...||...|.++. |+|++.++++++.+|    .|+|||+.+ ..+.+..+.+|.+.|++++|+|+  +++|++|+.||.
T Consensus         4 ~l~gH~~~V~~l~-~s~dg~~latg~~dg----~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAV-LDYYGKRLATCSSDK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEEC-CCSSSCCEEEEETTT----EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEE-ECCCCCeEEEEECCC----cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            4568889999999 999999999887766    999999963 24778899999999999999987  999999999999


Q ss_pred             --eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCC--ceeE
Q 016134          198 --AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTL--EPVM  269 (394)
Q Consensus       198 --vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~--~~~~  269 (394)
                        +||+.+++.....                   ...+|...|.+++|+    ++++++|+.|+.|++||++++  ....
T Consensus        79 I~vwd~~~~~~~~~~-------------------~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           79 VLIWKEENGRWSQIA-------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             EEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             EEEEECCCCcccccc-------------------cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence              6999887632110                   222677888888886    568999999999999999876  3455


Q ss_pred             EEcCCCCCcEEEEEcC---------------CEEEEEeCCCcEEEEEeCCCce----eeEeecccCCcceEEEEeeECCC
Q 016134          270 TLNDHTDAPMSLLCWD---------------QFLLSCSLDHTIKVWFATGRGN----LEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       270 ~~~~h~~~v~~l~~~~---------------~~l~s~s~Dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .+..|...|.++.|+.               .+|++++.|+.|++||++.+..    ...+..|...  +.  ++.|+|+
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--V~--~l~~sp~  215 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--VR--DVAWSPT  215 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC--EE--EEEECCC
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc--EE--EEEeccC
Confidence            6778999999999973               6899999999999999987643    3334444433  33  3346999


Q ss_pred             ---CCcEEEEEeCCCeEEEEECCCCceeE------EEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          331 ---GKPVLICACNDNTVHLYELPSFMERG------RIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       331 ---g~~~l~sgs~dg~I~iwd~~~~~~~~------~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                         +. +|++++.|+.|++||+.++....      ...+...|++++|+|++ +|++++.||.|++|++...
T Consensus       216 ~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          216 VLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence               66 99999999999999999864211      11135679999999999 9999999999999999853

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.2e-26  Score=214.34  Aligned_cols=252  Identities=17%  Similarity=0.201  Sum_probs=201.0

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR  153 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~  153 (394)
                      +.++|++  ++ .|+. +.|++|+|||++++.....-          ...+|...|.+++ ++|++.++++++.+|    
T Consensus        29 ~~l~WS~--~~-~lAv-g~D~tV~iWd~~tg~~~~~~----------~~~~~~~~V~~v~-~~~~~~~l~sgs~Dg----   89 (318)
T 4ggc_A           29 NLVDWSS--GN-VLAV-ALDNSVYLWSASSGDILQLL----------QMEQPGEYISSVA-WIKEGNYLAVGTSSA----   89 (318)
T ss_dssp             BCEEECT--TS-EEEE-EETTEEEEEETTTCCEEEEE----------ECCSTTCCEEEEE-ECTTSSEEEEEETTS----
T ss_pred             eEEEECC--CC-EEEE-EeCCEEEEEECCCCCEEEEE----------EecCCCCeEEEEE-ECCCCCEEEEEECCC----
Confidence            5678886  54 4454 56999999999998754311          2456778899999 999999998877666    


Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE--EecCCCCcEEEEEEcCC--EEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF--SLDGPVGEVYSMVVANE--MLF  227 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~--~~~~~~~~v~~l~~~~~--~l~  227 (394)
                      +|++||+.++ +++..+.+|...+.++.+  ++..|++++.++.  +|+.......  .+.+|...+..+.+.++  .++
T Consensus        90 ~v~iw~~~~~-~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (318)
T 4ggc_A           90 EVQLWDVQQQ-KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  166 (318)
T ss_dssp             EEEEEETTTT-EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cEEEeecCCc-eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE
Confidence            9999999988 889999999999987765  5679999999998  4777665433  67789999999999887  788


Q ss_pred             EEecC----------------------CCCCCEEEEEec---CCe--EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE
Q 016134          228 AGAQD----------------------GHTRPVTCLAVG---RSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS  280 (394)
Q Consensus       228 ~~~~~----------------------~h~~~V~~l~~~---~~~--l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~  280 (394)
                      +++.|                      .|...|.++.+.   ...  +++++.+++|++||.+......... +...+..
T Consensus       167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~  245 (318)
T 4ggc_A          167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCS  245 (318)
T ss_dssp             EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeee
Confidence            87766                      466788888886   333  4567789999999999888776654 6677888


Q ss_pred             EEEc--CCEEEEEe--CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          281 LLCW--DQFLLSCS--LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       281 l~~~--~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      +.+.  +..+++++  .|+.|++||+++++.+..+..|...+..+    .|+|+++ +|++++.|++|+|||+.+..
T Consensus       246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l----~~spdg~-~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL----TMSPDGA-TVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE----EECTTSS-CEEEEETTTEEEEECCSCCC
T ss_pred             eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE----EEcCCCC-EEEEEecCCeEEEEECCCCC
Confidence            8888  66666554  79999999999999999988877554333    4699999 89999999999999997653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=5.8e-28  Score=226.69  Aligned_cols=252  Identities=16%  Similarity=0.263  Sum_probs=192.0

Q ss_pred             ccc-ccccCCC---CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccc---ccccCCCeecCCCCCeE
Q 016134           83 NNL-WVSSGSE---DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC---CHWLLGNCVRGDECRFL  155 (394)
Q Consensus        83 ~~~-~~~s~s~---d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~---~~~~~~~~~~g~~~~~i  155 (394)
                      ++. .+++|+.   |+++++||++++....           ....+|...|.++. |+|+   +.++++++.+|    .|
T Consensus        29 ~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-----------~~~~~~~~~v~~~~-~~~~~~~~~~l~~~~~dg----~i   92 (357)
T 3i2n_A           29 CSAKFVTMGNFARGTGVIQLYEIQHGDLKL-----------LREIEKAKPIKCGT-FGATSLQQRYLATGDFGG----NL   92 (357)
T ss_dssp             TSSEEEEEEC--CCCEEEEEEEECSSSEEE-----------EEEEEESSCEEEEE-CTTCCTTTCCEEEEETTS----CE
T ss_pred             CCceEEEecCccCCCcEEEEEeCCCCcccc-----------eeeecccCcEEEEE-EcCCCCCCceEEEecCCC----eE
Confidence            454 3456665   9999999999876432           12336777899999 9998   68888777666    99


Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEE------ecCCCCEEEEEeCCCc--eeecCCCc-E-EEecCCCC----cEEEEE-
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIA------LPLRSDKLFSGSRDGT--AWNIESSA-E-FSLDGPVG----EVYSMV-  220 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~------~s~~~~~l~sgs~Dg~--vWd~~~~~-~-~~~~~~~~----~v~~l~-  220 (394)
                      ++||+.++..++..+.+|...|.+++      |+|++++|++++.|+.  +||+++++ . ..+..+.+    .+.++. 
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF  172 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence            99999887548889999999999995      5789999999999999  69999876 2 24444333    788888 


Q ss_pred             ---EcCC--EEEEEecC-----------------CCCCCEEEEEec-----CCeEEEEeCCCeEEEEeCCCCceeEEEc-
Q 016134          221 ---VANE--MLFAGAQD-----------------GHTRPVTCLAVG-----RSRLCSGSMDNTIRVWELDTLEPVMTLN-  272 (394)
Q Consensus       221 ---~~~~--~l~~~~~~-----------------~h~~~V~~l~~~-----~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-  272 (394)
                         |+++  .+++++.+                 .|...|.+++|+     +++|++++.|+.|++||+++++++..+. 
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence               4555  77777765                 578899999996     4789999999999999998876554444 


Q ss_pred             ----CCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCc-------------------eeeEeecccCCcceEEEEee
Q 016134          273 ----DHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRG-------------------NLEAAYTHKEDNGVLALGGL  326 (394)
Q Consensus       273 ----~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~  326 (394)
                          +|...|+++.|+  +. +|++++.|+.|++||++...                   .+..+..|...  +.  .+.
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--v~--~~~  328 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP--IS--SLD  328 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC--EE--EEE
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC--ee--EEE
Confidence                899999999998  44 89999999999999998643                   23334444333  33  334


Q ss_pred             ECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          327 NDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      |+|+++.++++++.|+.|+|||+.+.+.
T Consensus       329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          329 WSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            7999994444899999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=231.75  Aligned_cols=259  Identities=10%  Similarity=0.045  Sum_probs=192.5

Q ss_pred             cccCCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec
Q 016134           69 KLAKKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      +...-..++|++  |+..++|+|.|++|+  |...+.               ...||...|..++ |+|++         
T Consensus        14 ~~~~v~sv~~Sp--DG~~iASas~D~TV~--d~~~~~---------------~l~gh~~~v~~V~-FsPdg---------   64 (588)
T 2j04_A           14 FEDWKNNLTWAR--DGTLYLTTFPDISIG--QPKYAK---------------DINCNSKNLFHVK-EFPLE---------   64 (588)
T ss_dssp             CSSSSCCEEECT--TSCEEEECSSSEEEE--EECCCS---------------CCSSBGGGTEEEE-EECCC---------
T ss_pred             hhccEEEEEECC--CCCEEEEEcCCceee--cccccc---------------eecCCCccEEEEE-ECCCC---------
Confidence            334667888999  999999999999999  543332               2358999999999 99977         


Q ss_pred             CCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                        .++.+.+|+.+..    ..+. .|...|.+++|+|+|++||+++.||.  |||.+.  .+....+...          
T Consensus        65 --~~~~~~~~~~~~~----~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~----------  126 (588)
T 2j04_A           65 --FENKLDFELAQQN----GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGN----------  126 (588)
T ss_dssp             --CCCTTTTSCCCSS----CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSC----------
T ss_pred             --CcceEEEEeCCCc----eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCc----------
Confidence              2334444543221    2222 56899999999999999999999999  699544  3221112110          


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-------eeEEE----cCCCCCcEEEEEcCCEEEEEe
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-------PVMTL----NDHTDAPMSLLCWDQFLLSCS  292 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-------~~~~~----~~h~~~v~~l~~~~~~l~s~s  292 (394)
                             --...|.+++|+  +++|++|+.||+|+|||+++++       .+.++    .+|...|.+++|+.+-+++++
T Consensus       127 -------~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass  199 (588)
T 2j04_A          127 -------LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAAL  199 (588)
T ss_dssp             -------STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEE
T ss_pred             -------cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEe
Confidence                   002257788887  7899999999999999999875       36776    668889999999933399999


Q ss_pred             CCCcEEEEEeCCCcee---eEee-cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEE
Q 016134          293 LDHTIKVWFATGRGNL---EAAY-THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVI  367 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~~---~~~~-~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l  367 (394)
                      .|++|++||+...+..   ..+. .|...+..++    |+  ++ .||+++ +++|++||+.+++..... .+...|..+
T Consensus       200 ~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva----Fs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          200 SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK----IV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII  271 (588)
T ss_dssp             TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE----EE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred             CCCeEEEEECCCCccccceeeecccccCcEEEEE----EE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence            9999999999876632   3342 3443344444    35  45 788887 699999999988774333 557789999


Q ss_pred             EE--CCCC-EEEEEeCCCeEEEEeCC
Q 016134          368 EI--GPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       368 ~~--sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +|  +|++ .|+++++||+ ++|.++
T Consensus       272 a~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          272 PLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99  9999 9999999999 999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=5.8e-28  Score=231.76  Aligned_cols=228  Identities=11%  Similarity=0.067  Sum_probs=159.4

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCce----EEEEecccCCCeEEEEecC--------CCCEEEEEeCCCc--eee
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLT----MLAKLEGHEKAVSGIALPL--------RSDKLFSGSRDGT--AWN  200 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~----~~~~l~~h~~~V~~l~~s~--------~~~~l~sgs~Dg~--vWd  200 (394)
                      +.+...++++++.++    +|+|||..++..    ++..+.+|++.|++|+|+|        |+++|+|++.|++  |||
T Consensus        97 ~~~~~~~las~~~d~----~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           97 SPVYSLFLACVCQDN----TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             CCEEEEEEEEEETTS----CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             cCCCCCEEEEEeCCC----cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            566677777666665    999999977632    3445789999999999987        7899999999999  699


Q ss_pred             cCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecC---CeEEEEeCCCeEEEEeCCCCceeEEE-----
Q 016134          201 IESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR---SRLCSGSMDNTIRVWELDTLEPVMTL-----  271 (394)
Q Consensus       201 ~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~---~~l~sgs~Dg~V~iwd~~~~~~~~~~-----  271 (394)
                      +.++... .+.                      .|...|.+++|++   .+|++++.|++|++||+++++....+     
T Consensus       173 ~~~~~~~~~~~----------------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          173 LTDEGPILAGY----------------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             EETTEEEEEEE----------------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             CCCCceeeeec----------------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence            9877654 322                      4566777777762   47999999999999999887643322     


Q ss_pred             --------------------cCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEE------
Q 016134          272 --------------------NDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA------  322 (394)
Q Consensus       272 --------------------~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------  322 (394)
                                          .+|...+.++.|+   +..|++++.|+++++||+........+..+........      
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                                3567788888886   78999999999999999987655444433221111000      


Q ss_pred             --------EEeeEC-CCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          323 --------LGGLND-PDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       323 --------~~~~~s-~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                              ....++ +.+..++++|+.|++|+|||+.+++...... +...|++++|+||| +||+++.|| +.+|++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                    011123 3344477888999999999999987766544 46789999999999 999998776 556654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=221.77  Aligned_cols=295  Identities=13%  Similarity=0.126  Sum_probs=196.7

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCC-ccccccCCCCccceeeeccccc-cccccCCCeecCCCCCeEEEEEc
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSA-SSTVSDESGDKSTSKKTTLKNV-CCHWLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~-~~~~~~~~g~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~i~iWd~  160 (394)
                      ++..+++++.|+++++||++++........... ........+|...|.++. |+| .+.++++++.+|    .|++||+
T Consensus        55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~s~~~d~----~i~iwd~  129 (408)
T 4a11_B           55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ-WYPHDTGMFTSSSFDK----TLKVWDT  129 (408)
T ss_dssp             TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE-ECTTCTTCEEEEETTS----EEEEEET
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE-EccCCCcEEEEEeCCC----eEEEeeC
Confidence            456789999999999999998775432110000 000112246888999999 998 777887766665    9999999


Q ss_pred             CCCceEEEEecccCCCeEEEEecCC---CCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC---EEEEEec
Q 016134          161 GEGLTMLAKLEGHEKAVSGIALPLR---SDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE---MLFAGAQ  231 (394)
Q Consensus       161 ~~~~~~~~~l~~h~~~V~~l~~s~~---~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~  231 (394)
                      .++ +.+..+. +...+.+++|++.   +.+|++++.|+.  +||+++++.+ .+..|...|.+++|+|+   .+++++.
T Consensus       130 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          130 NTL-QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             TTT-EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred             CCC-ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence            887 6666665 7889999999884   459999999999  6999988765 66779999999999988   4777776


Q ss_pred             C----------------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134          232 D----------------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       232 ~----------------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      +                                  .|...|.+++|+  +++|++++.|+.|++||+++++....+..+.
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  287 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV  287 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc
Confidence            5                                  377889999997  6789999999999999999887655443321


Q ss_pred             ------CCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          276 ------DAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       276 ------~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                            .....+... ...+++++.|+.|++||+.+++.+..+..|...+..+    .|+|++. +|++++.||.|++||
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~----~~s~~~~-~l~s~~~dg~i~iw~  362 (408)
T 4a11_B          288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC----VFQSNFQ-ELYSGSRDCNILAWV  362 (408)
T ss_dssp             CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE----EEETTTT-EEEEEETTSCEEEEE
T ss_pred             cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE----EEcCCCC-EEEEECCCCeEEEEe
Confidence                  111222222 5667777889999999999999888887776544333    4689998 999999999999999


Q ss_pred             CCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          349 LPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       349 ~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      +.+.+.+.........  ..+.+..  .+.+.+.|+.+++|+...
T Consensus       363 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          363 PSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ECC------------------------------------------
T ss_pred             CCCCCccCCCCceEec--cccccccceeecccCccCceeecCCcc
Confidence            9998776655432222  2334433  667788899999998653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=1.9e-27  Score=221.30  Aligned_cols=255  Identities=14%  Similarity=0.103  Sum_probs=192.5

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--cccccCCCeecCCCCC
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--CCHWLLGNCVRGDECR  153 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~  153 (394)
                      .+|++  ++..+++++.|+++++||++++....        .......+|...|.++. |+|  ++.++++++.+|    
T Consensus        17 ~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~v~~~~-~~~~~d~~~l~s~~~dg----   81 (351)
T 3f3f_A           17 VVYDF--YGRHVATCSSDQHIKVFKLDKDTSNW--------ELSDSWRAHDSSIVAID-WASPEYGRIIASASYDK----   81 (351)
T ss_dssp             EEECS--SSSEEEEEETTSEEEEEEECSSSCCE--------EEEEEEECCSSCEEEEE-ECCGGGCSEEEEEETTS----
T ss_pred             EEEcC--CCCEEEEeeCCCeEEEEECCCCCCcc--------eecceeccCCCcEEEEE-EcCCCCCCEEEEEcCCC----
Confidence            44555  77789999999999999998764210        00113457888999999 888  588888777766    


Q ss_pred             eEEEEEcCCCc--------eEEEEecccCCCeEEEEecCC--CCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEE
Q 016134          154 FLHSWFCGEGL--------TMLAKLEGHEKAVSGIALPLR--SDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVV  221 (394)
Q Consensus       154 ~i~iWd~~~~~--------~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~  221 (394)
                      .|++||+.++.        +++..+.+|...|.+++|+|+  +++|++++.|+.  +||+.+++.+........+..+.+
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            99999997653        668889999999999999999  999999999998  699988765321111111111111


Q ss_pred             cCCEEEEEecCCCCCCEEEEEec-----CCeEEEEeCCCeEEEEeCCCCce--eEEEcCCCCCcEEEEEc--C----CEE
Q 016134          222 ANEMLFAGAQDGHTRPVTCLAVG-----RSRLCSGSMDNTIRVWELDTLEP--VMTLNDHTDAPMSLLCW--D----QFL  288 (394)
Q Consensus       222 ~~~~l~~~~~~~h~~~V~~l~~~-----~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~----~~l  288 (394)
                              ....|...+.+++|+     +.+|++++.|+.+.+|+...++.  +..+.+|...|.+++|+  +    ++|
T Consensus       162 --------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          162 --------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             --------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             --------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence                    112677888888885     57899999999998888887765  77788999999999999  3    589


Q ss_pred             EEEeCCCcEEEEEeCCC----------------------------------------------ceeeEeecccCCcceEE
Q 016134          289 LSCSLDHTIKVWFATGR----------------------------------------------GNLEAAYTHKEDNGVLA  322 (394)
Q Consensus       289 ~s~s~Dg~i~vwd~~~~----------------------------------------------~~~~~~~~~~~~~~~~~  322 (394)
                      ++++.|+.|++||++..                                              +.+..+..|...  +. 
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-  310 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE--VW-  310 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC--EE-
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc--EE-
Confidence            99999999999999864                                              233333334333  33 


Q ss_pred             EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134          323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI  358 (394)
Q Consensus       323 ~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~  358 (394)
                       .+.|+|+++ +|++++.|+.|+|||+.+++....+
T Consensus       311 -~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          311 -SVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             -EEEECSSSC-CEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             -EEEEcCCCC-EEEEecCCCcEEEEecCcCcchhhe
Confidence             334799998 8999999999999999987655544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=5.5e-26  Score=214.56  Aligned_cols=216  Identities=13%  Similarity=0.092  Sum_probs=181.3

Q ss_pred             ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc--E-EEecCCCCcEEEEEEcCC--EEEEEecC----------
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA--E-FSLDGPVGEVYSMVVANE--MLFAGAQD----------  232 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~--~-~~~~~~~~~v~~l~~~~~--~l~~~~~~----------  232 (394)
                      +..|..+|++++|+|++++|++++.|+.  +||+++++  . ..+..|...|.+++|+++  .+++++.+          
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            4569999999999999999999999998  69999985  3 367789999999999987  78888766          


Q ss_pred             ----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce---eEEE-cCCCCCcEEEEEc--CCEEEEEeCC
Q 016134          233 ----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP---VMTL-NDHTDAPMSLLCW--DQFLLSCSLD  294 (394)
Q Consensus       233 ----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~---~~~~-~~h~~~v~~l~~~--~~~l~s~s~D  294 (394)
                                .|...|.+++|+  +++|++++.|+.|++||++..+.   ...+ ..|...|.+++|+  +++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence                      588899999997  67999999999999999988762   3333 6789999999998  7899999999


Q ss_pred             CcEEEEEeC------------------CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          295 HTIKVWFAT------------------GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       295 g~i~vwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      +.|++||++                  .++.+..+..+....  .  .+.|+|++. +|++++.|+.|++||+++++.+.
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~--~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV--H--GVCFSANGS-RVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE--E--EEEECSSSS-EEEEEETTTEEEEEEGGGTTEEE
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeE--E--EEEECCCCC-EEEEEeCCCEEEEEECCCCceeE
Confidence            999999964                  445555555444333  3  334689998 89999999999999999998888


Q ss_pred             EEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          357 RIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       357 ~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .+.. ...|.+++|+|++ +|+++ .|+.|++|++..
T Consensus       239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            8765 5689999999999 66666 999999999876

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=9.3e-26  Score=213.43  Aligned_cols=257  Identities=13%  Similarity=0.089  Sum_probs=190.2

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc--e
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT--A  198 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~--v  198 (394)
                      ..+|...|.+++ |+|++.+++++..+     .++||+..+. +.+....  ...+..+++.++++.++ +++.|++  |
T Consensus        15 ~~~h~~~V~~v~-fs~dg~~la~g~~~-----~~~iw~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A           15 ENHVSNPVTDYE-FNQDQSCLILSTLK-----SFEIYNVHPV-AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             ----CCCCCEEE-ECTTSSEEEEECSS-----EEEEEEETTE-EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred             cccCCCceEEEE-ECCCCCEEEEEcCC-----EEEEEecCCc-ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence            356778999999 99999999876544     3789998765 4443332  23588889999888874 5667777  6


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC------CCCC---------CEEEEEecCCeEEE--EeCCCeEEEEe
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD------GHTR---------PVTCLAVGRSRLCS--GSMDNTIRVWE  261 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~------~h~~---------~V~~l~~~~~~l~s--gs~Dg~V~iwd  261 (394)
                      ||+.+++.+....+...|.++.++++.++++..+      -...         ....++++..+++.  |+.||.|++||
T Consensus        86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd  165 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITK  165 (355)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEE
T ss_pred             EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEE
Confidence            9999999886556778999999999966665433      0000         11222333456666  68999999999


Q ss_pred             CCCCc----------------eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCc-EEEEEeCCCceeeEee-c-ccCCcce
Q 016134          262 LDTLE----------------PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHT-IKVWFATGRGNLEAAY-T-HKEDNGV  320 (394)
Q Consensus       262 ~~~~~----------------~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~-i~vwd~~~~~~~~~~~-~-~~~~~~~  320 (394)
                      +++++                ++..+.+|...|.+++|+  +.+|++++.|++ |++||+++++.+..+. . |...  +
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~--v  243 (355)
T 3vu4_A          166 LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD--V  243 (355)
T ss_dssp             CCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC--E
T ss_pred             CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc--E
Confidence            99765                278899999999999998  789999999998 9999999998888877 3 4433  3


Q ss_pred             EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE--E--------------------Eec--CCcEEEEEECCCC-EE
Q 016134          321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG--R--------------------IFS--KHEVRVIEIGPDK-LF  375 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~--~--------------------~~~--~~~v~~l~~sp~~-~l  375 (394)
                      .+  +.|+|+++ +|++++.|++|+|||++......  .                    +..  ......++|++++ +|
T Consensus       244 ~~--~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l  320 (355)
T 3vu4_A          244 VD--MKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV  320 (355)
T ss_dssp             EE--EEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred             EE--EEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence            33  34799999 99999999999999997653111  0                    000  1224678999999 99


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 016134          376 FTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~~~  392 (394)
                      ++++.||.+++|++...
T Consensus       321 ~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          321 VVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EEETTTTEEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEcC
Confidence            99999999999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=9.9e-26  Score=212.99  Aligned_cols=206  Identities=17%  Similarity=0.225  Sum_probs=163.0

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      +++..+.+|.+.|++++|+|++++|++++.|+.  |||++.......                   ....+|...|.+++
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------~~~~~h~~~v~~~~   62 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-------------------DTLTGHEGPVWRVD   62 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-------------------EEECCCSSCEEEEE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee-------------------eEecCCCCcEEEEE
Confidence            456788999999999999999999999999998  699974432211                   12237888888998


Q ss_pred             ec----CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          243 VG----RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       243 ~~----~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      |+    +++|++++.|+.|++||+++++  .+..+..|...|.+++|+    +.+|++++.|+.|++||++.........
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  142 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII  142 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence            86    6899999999999999999887  778888899999999998    5699999999999999998874433322


Q ss_pred             cccCCcceEEEEeeECC-------------CCCcEEEEEeCCCeEEEEECCCCcee----EEEe-cCCcEEEEEECCC--
Q 016134          313 THKEDNGVLALGGLNDP-------------DGKPVLICACNDNTVHLYELPSFMER----GRIF-SKHEVRVIEIGPD--  372 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~-------------~g~~~l~sgs~dg~I~iwd~~~~~~~----~~~~-~~~~v~~l~~sp~--  372 (394)
                      .......+.++  .|+|             ++. +|++++.|+.|++||+++....    ..+. +...|.+++|+|+  
T Consensus       143 ~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          143 IDAHAIGVNSA--SWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EECCTTCEEEE--EECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             ecCCCCceEEE--EEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            22222333333  4678             577 8999999999999999876533    2333 3667999999999  


Q ss_pred             -C-EEEEEeCCCeEEEEeCCCC
Q 016134          373 -K-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       373 -~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                       + +|++++.||.|++||+...
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESST
T ss_pred             CCCeEEEEeCCCEEEEEeCCCC
Confidence             8 9999999999999998864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.7e-25  Score=208.01  Aligned_cols=228  Identities=14%  Similarity=0.211  Sum_probs=183.8

Q ss_pred             ceEEEEecccCCCeEEEEecCC---CCEEEEEeCCCc--eeecCC-CcEE--EecCCCCcEEEEEEcCC--EEEEEecC-
Q 016134          164 LTMLAKLEGHEKAVSGIALPLR---SDKLFSGSRDGT--AWNIES-SAEF--SLDGPVGEVYSMVVANE--MLFAGAQD-  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~---~~~l~sgs~Dg~--vWd~~~-~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~~-  232 (394)
                      .+.+..+.+|.+.|++++|+|+   +++|++++.|+.  |||+++ +..+  .+..|...|.+++|+++  .+++++.+ 
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            4778899999999999999999   699999999998  699997 5543  56789999999999988  78888877 


Q ss_pred             ----------------CCCCCEEEEEe--c--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEe
Q 016134          233 ----------------GHTRPVTCLAV--G--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS  292 (394)
Q Consensus       233 ----------------~h~~~V~~l~~--~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  292 (394)
                                      .|...|.+++|  +  +.+|++++.|+.|++||+++++++..+..+ ..+.++.+....+++++
T Consensus       109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEETTEEEEEE
T ss_pred             cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecCCeeEEEe
Confidence                            68899999999  5  567999999999999999999999988866 47788888888999999


Q ss_pred             CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCC-cEEEEEeCCCeEEEEECCCC---ceeEEEecCC------
Q 016134          293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK-PVLICACNDNTVHLYELPSF---MERGRIFSKH------  362 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~~------  362 (394)
                      .++.+++||++...................+.....+... ..+++++.|+.|++||++..   .....+....      
T Consensus       188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence            9999999999876554444433333334444433333322 14899999999999999987   3444444322      


Q ss_pred             -------cEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          363 -------EVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       363 -------~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                             .|++++|+|++ +|++++.||.|++||+.+.
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence                   69999999999 9999999999999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=7.2e-25  Score=208.95  Aligned_cols=258  Identities=13%  Similarity=0.053  Sum_probs=197.0

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccccc-CCCeecCCCCCeEEEEEcCCCc
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWL-LGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~-~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      .+++++.|++|++||++++....            ...++. .+.+++ ++|++.++ +++..+    +.|++||+.++ 
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~------------~~~~~~-~~~~~~-~s~dg~~l~~~~~~d----~~i~v~d~~~~-   64 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTA------------TIPVGS-NPMGAV-ISPDGTKVYVANAHS----NDVSIIDTATN-   64 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEE------------EEECSS-SEEEEE-ECTTSSEEEEEEGGG----TEEEEEETTTT-
T ss_pred             EEEEcCCCCEEEEEECCCCeEEE------------EeecCC-CcceEE-ECCCCCEEEEECCCC----CeEEEEECCCC-
Confidence            35788999999999999876532            112232 467888 99999876 433344    49999999887 


Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEe-CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL  241 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l  241 (394)
                      +.+..+..|. .|.+++|+|++++|+.++ .|+.  +||+.+++.+....                      +...+.++
T Consensus        65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----------------------~~~~~~~~  121 (391)
T 1l0q_A           65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK----------------------TGKSPLGL  121 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------------CSSSEEEE
T ss_pred             eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe----------------------CCCCcceE
Confidence            7777777665 999999999999886554 5577  69999887764322                      22356677


Q ss_pred             Eec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEE-EEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          242 AVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFL-LSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       242 ~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      +|+  ++.| ++++.|+.|++||+++++.+..+..+ ..+.++.|+  +++| ++++.|+.|++||+++++....+... 
T Consensus       122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-  199 (391)
T 1l0q_A          122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-  199 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-
Confidence            776  4555 78888999999999999998888765 456889998  5666 67778999999999988766555432 


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEe---CCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EE-EEEeCCCeEEEEeCC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICAC---NDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LF-FTGDGAGMLGVWKLL  390 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l-~tgs~Dg~I~vWd~~  390 (394)
                        ....  .+.|+|+++ +|++++   .++.|++||+.+++.+..+.....+.+++|+|++ +| ++++.|+.|++||+.
T Consensus       200 --~~~~--~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          200 --AAPS--GIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             --SEEE--EEEECTTSS-EEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             --CCcc--ceEECCCCC-EEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence              1222  345799999 566565   6899999999999888888777779999999999 55 677899999999987


Q ss_pred             CC
Q 016134          391 AK  392 (394)
Q Consensus       391 ~~  392 (394)
                      +.
T Consensus       275 ~~  276 (391)
T 1l0q_A          275 TN  276 (391)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=6.4e-25  Score=212.18  Aligned_cols=273  Identities=10%  Similarity=0.033  Sum_probs=207.2

Q ss_pred             CCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCe
Q 016134           75 PPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRF  154 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~  154 (394)
                      ..+|++  ++..+++++.|+++++||++++......       ......+|...+..+. +++++.+++++..++    .
T Consensus       127 ~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~----~  192 (433)
T 3bws_A          127 SVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLS-------PPEKYKKKLGFVETIS-IPEHNELWVSQMQAN----A  192 (433)
T ss_dssp             CCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEEC-------CCHHHHTTCCEEEEEE-EGGGTEEEEEEGGGT----E
T ss_pred             EEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeec-------CcccccccCCceeEEE-EcCCCEEEEEECCCC----E
Confidence            455555  6667778888999999999987753211       0012346777889998 899998888776555    9


Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEE-EeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFS-GSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s-gs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      |++||+.++ +.+..+..|...+.+++|+|++++|++ ++.|+.  +||+++++.........                 
T Consensus       193 v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------------  254 (433)
T 3bws_A          193 VHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-----------------  254 (433)
T ss_dssp             EEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-----------------
T ss_pred             EEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-----------------
Confidence            999999877 777888899999999999999998854 447887  69999887764433222                 


Q ss_pred             CCCCCCEEEEEec--CCeEEEEe--------CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEE
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGS--------MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIK  298 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs--------~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~  298 (394)
                           .+.+++|+  +++|++++        .|+.|++||+++++.+..+. |...+.+++|+  ++ ++++++.|+.|+
T Consensus       255 -----~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          255 -----LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIE  328 (433)
T ss_dssp             -----EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred             -----CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEE
Confidence                 35555664  45666666        58999999999988777663 55688899998  54 556678999999


Q ss_pred             EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC---------------CCeEEEEECCCCceeEEEecCCc
Q 016134          299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN---------------DNTVHLYELPSFMERGRIFSKHE  363 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~---------------dg~I~iwd~~~~~~~~~~~~~~~  363 (394)
                      +||+.+++.+..+. +..  ...  .+.|+|+++ +|++++.               ||.|++||+.+++.+..+.....
T Consensus       329 v~d~~~~~~~~~~~-~~~--~~~--~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~  402 (433)
T 3bws_A          329 VYDLKEKKVQKSIP-VFD--KPN--TIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ  402 (433)
T ss_dssp             EEETTTTEEEEEEE-CSS--SEE--EEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS
T ss_pred             EEECCCCcEEEEec-CCC--CCC--eEEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC
Confidence            99999877666554 222  223  335799998 6666655               57999999999998888887778


Q ss_pred             EEEEEECCCC-EEEEEe-CCCeEEEEeCCC
Q 016134          364 VRVIEIGPDK-LFFTGD-GAGMLGVWKLLA  391 (394)
Q Consensus       364 v~~l~~sp~~-~l~tgs-~Dg~I~vWd~~~  391 (394)
                      +.+++|+|++ +|++++ .|+.|++|+++.
T Consensus       403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999999 777766 599999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=218.31  Aligned_cols=216  Identities=11%  Similarity=0.121  Sum_probs=171.9

Q ss_pred             ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc------------EEEecCCC------------CcEEEEEEcCC-
Q 016134          172 GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA------------EFSLDGPV------------GEVYSMVVANE-  224 (394)
Q Consensus       172 ~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~------------~~~~~~~~------------~~v~~l~~~~~-  224 (394)
                      .|.+.|++++|+|++++|++|+.|+.  |||+.+++            ...+.+|.            ..|.+++|+++ 
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            36899999999999999999999998  69999876            33667887            88999999986 


Q ss_pred             ---EEEEEecC----------------------------------------------------------CCCCCEEEEEe
Q 016134          225 ---MLFAGAQD----------------------------------------------------------GHTRPVTCLAV  243 (394)
Q Consensus       225 ---~l~~~~~~----------------------------------------------------------~h~~~V~~l~~  243 (394)
                         .+++++.|                                                          +|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence               46666543                                                          48888999999


Q ss_pred             c--CCeEEEEeCCCeEEEEeCCC-CceeE-------EEcCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEeCCCce---
Q 016134          244 G--RSRLCSGSMDNTIRVWELDT-LEPVM-------TLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGN---  307 (394)
Q Consensus       244 ~--~~~l~sgs~Dg~V~iwd~~~-~~~~~-------~~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~vwd~~~~~~---  307 (394)
                      +  +++|++| .|+.|++||+++ .+++.       .+.+|...|.+++|+  + .+|++++.|+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            7  6789998 799999999984 44444       256799999999999  5 7999999999999999998775   


Q ss_pred             -eeEeecccCC----------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-CceeEEEecCCc------------
Q 016134          308 -LEAAYTHKED----------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-FMERGRIFSKHE------------  363 (394)
Q Consensus       308 -~~~~~~~~~~----------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~------------  363 (394)
                       ...+..+...          ..+.  ++.|+|+++ +|++++. +.|+|||+++ ++.+..+.....            
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSIS--DVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEE--EEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             eeeEeccCCCccccccccccCceEE--EEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence             4555554431          1233  335799999 8899988 9999999997 666666654322            


Q ss_pred             ----EEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          364 ----VRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       364 ----v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                          +..++|+|++ +|++++.||.|++||+.+.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence                3349999999 9999999999999999765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=2.9e-25  Score=210.02  Aligned_cols=225  Identities=9%  Similarity=0.035  Sum_probs=155.9

Q ss_pred             EEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCC--EE-EEEecC
Q 016134          157 SWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANE--ML-FAGAQD  232 (394)
Q Consensus       157 iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~~  232 (394)
                      ||++.+. +++.++..|...|++++|+||+++|++|+.|+. |||+++++........ .+..+.+.++  .+ ++++.+
T Consensus         3 i~s~~~~-~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITR-NPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             -----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSST
T ss_pred             ccccccc-CCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCc
Confidence            3444444 567778999999999999999999999998886 7999887765332221 3444555443  33 344433


Q ss_pred             -----------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC-ceeEEEcCCCCCcEEEEEcCCEEEE--Ee
Q 016134          233 -----------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL-EPVMTLNDHTDAPMSLLCWDQFLLS--CS  292 (394)
Q Consensus       233 -----------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s--~s  292 (394)
                                       .|...|.++.++++.++++. |+.|++||+.+. +.+.++..   +...+++...+++.  ++
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg~  156 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNEF  156 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEESS
T ss_pred             cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCCC
Confidence                             35668888888877766654 778999998887 66555543   22233334466666  47


Q ss_pred             CCCcEEEEEeCCCc----------------eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCe-EEEEECCCCcee
Q 016134          293 LDHTIKVWFATGRG----------------NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNT-VHLYELPSFMER  355 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~-I~iwd~~~~~~~  355 (394)
                      .||.|++||++++.                .+..+..|...+..+    .|+|+++ +|++++.|++ |+|||+++++.+
T Consensus       157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~----~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV----RLNRKSD-MVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             CTTCEEEEECCC------------------CCEEECCCSSCEEEE----EECTTSS-EEEEEETTCSEEEEEETTTCCEE
T ss_pred             cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE----EECCCCC-EEEEEeCCCCEEEEEECCCCcEE
Confidence            89999999998754                145566665443333    4699998 9999999998 999999999999


Q ss_pred             EEEe---cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          356 GRIF---SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       356 ~~~~---~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..+.   +...|++++|+|++ +|++++.|+.|++||+...
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            9887   57789999999999 9999999999999999754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.7e-25  Score=208.88  Aligned_cols=231  Identities=10%  Similarity=0.032  Sum_probs=170.9

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCC
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGP  212 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~  212 (394)
                      +..++..+++++.+|    .|++||+.++ +.+..+.  ...|.++.|+|+   +++++.|++  +|+........ ...
T Consensus        44 ~~~d~~~l~sg~~Dg----~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~-~~~  112 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDG----ALHFTQLKDS-KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL-DSK  112 (343)
T ss_dssp             SSEEEEEEEEEEETT----EEEEEEESSS-SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE-ETT
T ss_pred             hcCCCCEEEEECCCC----cEEEEECCCC-cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe-ecC
Confidence            445667777777666    9999999887 5556655  577888999988   999999998  58776422111 111


Q ss_pred             CCcEEEEEEcCCEEEEEecCCCCCCEEEEEec----CCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc--C
Q 016134          213 VGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG----RSRLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW--D  285 (394)
Q Consensus       213 ~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~----~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~  285 (394)
                      ...          ++.....+|...|.+++|+    +++|++++.|++|++||+++++++..+.. |...|.+++|+  +
T Consensus       113 ~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg  182 (343)
T 3lrv_A          113 TNK----------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS  182 (343)
T ss_dssp             TCC----------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred             Ccc----------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence            111          1111222677789999886    46899999999999999999998777644 55689999998  7


Q ss_pred             CEEEEEeCCCcEEEEEeCCCcee-eEeec-ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---
Q 016134          286 QFLLSCSLDHTIKVWFATGRGNL-EAAYT-HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---  360 (394)
Q Consensus       286 ~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---  360 (394)
                      .+|++|+.|+.|++||+++++.+ ..+.. |...  +.+  +.|+|++. +|++++ |+.|+|||+++.+....+..   
T Consensus       183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~--l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~  256 (343)
T 3lrv_A          183 LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK--IKE--VKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTI  256 (343)
T ss_dssp             CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC--EEE--EEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC
T ss_pred             CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC--EEE--EEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeeccccc
Confidence            89999999999999999998877 55555 4433  333  34699998 888888 45999999998866543321   


Q ss_pred             -CCcE--EEEEECCCC-EEEEEeC-CCeEEEEeCCCC
Q 016134          361 -KHEV--RVIEIGPDK-LFFTGDG-AGMLGVWKLLAK  392 (394)
Q Consensus       361 -~~~v--~~l~~sp~~-~l~tgs~-Dg~I~vWd~~~~  392 (394)
                       ...+  .+++|+|++ +|++++. |+.|++|++...
T Consensus       257 ~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          257 PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence             1222  469999999 9999888 999999998654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.7e-25  Score=213.53  Aligned_cols=231  Identities=9%  Similarity=0.083  Sum_probs=181.0

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--eEEEEec----------------------------------
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL--TMLAKLE----------------------------------  171 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~--~~~~~l~----------------------------------  171 (394)
                      .+.++. +++++.+++++ ..+    .|++||+.++.  +.+..+.                                  
T Consensus         6 p~~~v~-~s~dg~~l~~~-~~~----~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            6 PLQNLL-TSRDGSLVFAI-IKN----CILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCEEE-ECSSSSEEEEE-ETT----EEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             cEEEEE-ecCCCCEEEEE-eCC----eEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            456777 99999876644 333    89999998773  1444444                                  


Q ss_pred             --------------------ccCCCeEEEEecCCCCEE-EEEeCCCc--eeecC--CCcEEEecCCCCcEEEEEEcCCEE
Q 016134          172 --------------------GHEKAVSGIALPLRSDKL-FSGSRDGT--AWNIE--SSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       172 --------------------~h~~~V~~l~~s~~~~~l-~sgs~Dg~--vWd~~--~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                                          +|.+.|++++|+|++++| ++++.|+.  |||+.  +++.+....               
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~---------------  144 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK---------------  144 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE---------------
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee---------------
Confidence                                344479999999999996 89999998  69998  666553210               


Q ss_pred             EEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeE----EEcCCCCCcEEEEEcCC-----EEEEEeCCC
Q 016134          227 FAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVM----TLNDHTDAPMSLLCWDQ-----FLLSCSLDH  295 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~-----~l~s~s~Dg  295 (394)
                          ...|...|.+++|+  +.+|++++.|+.|++|++.+++...    .+.+|...|.+++|+..     +|++++.|+
T Consensus       145 ----~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~  220 (450)
T 2vdu_B          145 ----RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE  220 (450)
T ss_dssp             ----EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred             ----cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence                01456778888887  6789999999999999998876543    67789999999999833     899999999


Q ss_pred             cEEEEEeCCCceeeEee-cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--------------
Q 016134          296 TIKVWFATGRGNLEAAY-THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--------------  360 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------  360 (394)
                      .|++||+++++.+..+. .|...  +.++  .|+ ++. +|++++.|+.|+|||+.+++.+..+..              
T Consensus       221 ~i~vwd~~~~~~~~~~~~~h~~~--v~~~--~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (450)
T 2vdu_B          221 HIKISHYPQCFIVDKWLFGHKHF--VSSI--CCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA  294 (450)
T ss_dssp             CEEEEEESCTTCEEEECCCCSSC--EEEE--EEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred             cEEEEECCCCceeeeeecCCCCc--eEEE--EEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence            99999999888776643 45433  3333  357 888 999999999999999999988777752              


Q ss_pred             ------------CCcEEEEEECCCC-EEEEEe-CCCeEEEEeC
Q 016134          361 ------------KHEVRVIEIGPDK-LFFTGD-GAGMLGVWKL  389 (394)
Q Consensus       361 ------------~~~v~~l~~sp~~-~l~tgs-~Dg~I~vWd~  389 (394)
                                  ...|..++|+|++ +|++++ .|+.|++|++
T Consensus       295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                        2458999999999 888888 8999999999

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=2.3e-26  Score=220.65  Aligned_cols=249  Identities=11%  Similarity=0.033  Sum_probs=167.0

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--------cccccCCCeecCCCCCe
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--------CCHWLLGNCVRGDECRF  154 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--------~~~~~~~~~~~g~~~~~  154 (394)
                      ++..++++|.|+++||||++++......       ......||...|.+++ |+|        ++.+|++++.|+    +
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~-------~~~~~~gH~~~v~~v~-~~p~~~~~~~~d~~~las~s~D~----t  167 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQH-------VLGGKSGHHNFVNDID-IADVYSADNRLAEQVIASVGDDC----T  167 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEE-------EECTTTSCSSCEEEEE-EEEEECTTCSEEEEEEEEEETTS----E
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceee-------eecccCCCCCceEEEE-EccccccccCCCCCEEEEEECCC----e
Confidence            5567899999999999999987642110       1124679999999999 987        678888776665    9


Q ss_pred             EEEEEcCCCceEEEEecccCCCeEEEEecCCC-CEEEEEeCCCc--eeecCCCcEEEe-cC----CCCcEEEEEEcCCEE
Q 016134          155 LHSWFCGEGLTMLAKLEGHEKAVSGIALPLRS-DKLFSGSRDGT--AWNIESSAEFSL-DG----PVGEVYSMVVANEML  226 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~--vWd~~~~~~~~~-~~----~~~~v~~l~~~~~~l  226 (394)
                      |+|||+.++ .++..+.+|...|.+++|+|++ .+|++++.|++  +||+.+++.... ..    +...+....+.+. .
T Consensus       168 v~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~-~  245 (393)
T 4gq1_A          168 LIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL-V  245 (393)
T ss_dssp             EEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG-C
T ss_pred             EEEEECCCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc-e
Confidence            999999877 6667778899999999999987 58999999999  699998876521 11    1112222222221 1


Q ss_pred             EEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE------------------c-
Q 016134          227 FAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC------------------W-  284 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~------------------~-  284 (394)
                      ......+|...|.++.|.   +..|++++.|+++++||+.+++....+..|...+..+.+                  + 
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence            222334789999999985   689999999999999999987776666665544443322                  2 


Q ss_pred             ---CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          285 ---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       285 ---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                         +.++++++.|++|++||+.+++.......+...  +.  .++|+|+|+ +||+++.+| +.+|.+..
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~--V~--svafspdG~-~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP--IV--DFCWHQDGS-HLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC--EE--EEEECTTSS-EEEEEESSE-EEEEEEGG
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc--EE--EEEEcCCCC-EEEEEeCCC-eEEEEEeC
Confidence               236777889999999999998887777766543  33  334799999 899998665 66666543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-24  Score=212.12  Aligned_cols=223  Identities=11%  Similarity=0.063  Sum_probs=170.5

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCC-----CeEEEEecCCCCEEEEEeCCCc-
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEK-----AVSGIALPLRSDKLFSGSRDGT-  197 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~l~sgs~Dg~-  197 (394)
                      ++...|.+++ |+|++.++|+++.+|    .|++||.+.   ++..+. |..     .|.+++|+|||++|++|+.||+ 
T Consensus        83 ~~~~~V~~va-wSPdG~~LAs~s~dg----~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           83 QPVCYPRVCK-PSPIDDWMAVLSNNG----NVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             SCSCCEEEEE-ECSSSSCEEEEETTS----CEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCCCcEEEEE-ECCCCCEEEEEeCCC----cEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence            3366899999 999999999888887    899999543   667777 776     4999999999999999999999 


Q ss_pred             -eeecCCCcE-------E-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCce-
Q 016134          198 -AWNIESSAE-------F-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEP-  267 (394)
Q Consensus       198 -vWd~~~~~~-------~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~-  267 (394)
                       |||+.++..       + .+..+                  ..+|...|.+++|+++-+++++.|++|++||+.+++. 
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~------------------~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLS------------------DAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECS------------------CTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSC
T ss_pred             EEEECCCCccccccceeeeeeecc------------------cccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccc
Confidence             699998752       1 22111                  1268889999999844499999999999999988773 


Q ss_pred             --eEEE-cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeE--CCCCCcEEEEEeCCC
Q 016134          268 --VMTL-NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN--DPDGKPVLICACNDN  342 (394)
Q Consensus       268 --~~~~-~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~~l~sgs~dg  342 (394)
                        .+++ .+|...|.+++|+++.||+++ +++|++||+..++.......|......+    .+  +|++. .|+++++||
T Consensus       216 ~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v----a~~~s~d~~-~La~a~edG  289 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII----PLNHEKEST-ILLMSNKTS  289 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE----EETTCSSCE-EEEECSSCE
T ss_pred             cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE----EeeeCCCCC-EEEEEcCCC
Confidence              3567 478899999999988999987 6999999998766544443555444433    36  88887 899999999


Q ss_pred             eEEEEECCCCc-----------------------eeEEEecCCcEEEEEECCCC-EEEEEeC
Q 016134          343 TVHLYELPSFM-----------------------ERGRIFSKHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       343 ~I~iwd~~~~~-----------------------~~~~~~~~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      + ++|......                       ....+.+...|.+++|+||| .+|+++.
T Consensus       290 ~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          290 Y-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             E-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             C-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            9 999875211                       11111112248999999999 8887763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=4.9e-24  Score=196.61  Aligned_cols=243  Identities=9%  Similarity=-0.047  Sum_probs=169.9

Q ss_pred             CCCcccccccCCCC-------CCCCCCCCCCcccccc-------CCCCc--cceeeecccccc----ccccCCCee----
Q 016134           92 EDRIPHVRNRENPG-------YTGPKNSSSASSTVSD-------ESGDK--STSKKTTLKNVC----CHWLLGNCV----  147 (394)
Q Consensus        92 ~d~~~~~w~~~~~~-------~~~~~~s~~~~~~~~~-------~~g~~--~~v~~~~~~~~~----~~~~~~~~~----  147 (394)
                      ...++++|+...+.       ...+..++..+.....       ..|+-  +.|++++ ++|+    +.+++.+..    
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla-~spd~~~~~~~l~s~g~~~~v  139 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF-CSSDDESEKQVLLKSGNIKAV  139 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC-C------CCEEEEEEEEEEEE
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE-ECCCccccccEEEeCCCeEEE
Confidence            35678888888762       1233333333332221       11322  5788888 9999    888876543    


Q ss_pred             ------------cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecC---CCCEEEEEeCCCc--eeecCCCcEE-Ee
Q 016134          148 ------------RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPL---RSDKLFSGSRDGT--AWNIESSAEF-SL  209 (394)
Q Consensus       148 ------------~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~sgs~Dg~--vWd~~~~~~~-~~  209 (394)
                                  ...-++.|++|++.+..+.+..+.+|...++.++|++   ++++|++++.|++  |||+++++++ .+
T Consensus       140 ~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL  219 (356)
T 2w18_A          140 LGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM  219 (356)
T ss_dssp             EEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE
Confidence                        1224789999999554478888889999999999999   7799999999999  6999999987 44


Q ss_pred             cCCC---CcEEEEEEcCC--EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE-----cCCCCCcE
Q 016134          210 DGPV---GEVYSMVVANE--MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL-----NDHTDAPM  279 (394)
Q Consensus       210 ~~~~---~~v~~l~~~~~--~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~-----~~h~~~v~  279 (394)
                      .++.   ..+.+++|+|+  .+++++.+   ..+       ..+++|+.|++|++||..+++++..+     .+|...+.
T Consensus       220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~---~~~-------w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l  289 (356)
T 2w18_A          220 HIDDSYQASVCHKAYSEMGLLFIVLSHP---CAK-------ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL  289 (356)
T ss_dssp             ECCC---CCCEEEEEEETTEEEEEEC----------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE
T ss_pred             cCCCcceeeeEEEEECCCCCEEEEeccC---CCc-------ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE
Confidence            4433   35667788887  33333321   111       25789999999999999999988766     47777776


Q ss_pred             EEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          280 SLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       280 ~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      +..+.+.++++++.|++|+|||+.+++.+.++..|......   .+.|+|+|+ +|++|+.|++|+|||+
T Consensus       290 sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs---~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          290 EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS---FVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC---EEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE---EEEECCCCC-EEEEEECCCcEEEecC
Confidence            67777899999999999999999999999888766543322   124699999 9999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=3.7e-24  Score=207.64  Aligned_cols=240  Identities=17%  Similarity=0.209  Sum_probs=178.3

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccccccc-ccCCCeecCCCCCeEEEEEcCC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ...+++++.|+.|++|++.+......  ............+|...+.++. |+|.+. ++++++.+|    .|++|++.+
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~l~s~~~dg----~i~vwd~~~  213 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLS-WNPNLNGYLLSASDDH----TICLWDINA  213 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEE-ECTTSTTEEEEECTTS----CEEEEETTS
T ss_pred             CcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEE-eCCCCCCeEEEEeCCC----eEEEEeCCC
Confidence            45788999999999999986321110  0000111123457888899999 999887 776655554    999999976


Q ss_pred             Cc------eEEEEecccCCCeEEEEecC-CCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCC
Q 016134          163 GL------TMLAKLEGHEKAVSGIALPL-RSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDG  233 (394)
Q Consensus       163 ~~------~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~  233 (394)
                      +.      .....+.+|...|.+++|+| ++.+|++++.|+.  +||++++....      .+.            ....
T Consensus       214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~------~~~------------~~~~  275 (430)
T 2xyi_A          214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK------PSH------------TVDA  275 (430)
T ss_dssp             CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS------CSE------------EEEC
T ss_pred             CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc------cee------------Eeec
Confidence            31      22567789999999999999 7789999999999  69998763100      000            1126


Q ss_pred             CCCCEEEEEec--C-CeEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEeCCC-
Q 016134          234 HTRPVTCLAVG--R-SRLCSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGR-  305 (394)
Q Consensus       234 h~~~V~~l~~~--~-~~l~sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~vwd~~~~-  305 (394)
                      |...|++++|+  + .+|++|+.|+.|++||+++ .+++..+..|...|.++.|+  + .+|++++.|+.|++||+... 
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            77888888887  3 3699999999999999998 56788999999999999998  4 57999999999999999862 


Q ss_pred             -------------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          306 -------------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       306 -------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                                   +.+..+..|...  +..  +.|+|++..+|++++.|+.|+||++...
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~h~~~--v~~--~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          356 EEQSTEDAEDGPPELLFIHGGHTAK--ISD--FSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCCCHHHHHHCCTTEEEECCCCSSC--EEE--EEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccCccccccCCcceEEEcCCCCCC--ceE--EEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                         333333333332  333  3469998878999999999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=218.22  Aligned_cols=202  Identities=18%  Similarity=0.219  Sum_probs=158.5

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      +..+.+|.+.|++++|+|++++|++|+.||.  |||+..+.....                   ....+|...|.+++|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-------------------~~l~~h~~~V~~l~~s   62 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-------------------DTLTGHEGPVWRVDWA   62 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-------------------EEECCCSSCEEEEEEC
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-------------------eeccCCcCceEEEEec
Confidence            4577899999999999999999999999998  699875432211                   1233788888888886


Q ss_pred             ----CCeEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCcEEEEEc----CCEEEEEeCCCcEEEEEeCCCceee--Eee
Q 016134          245 ----RSRLCSGSMDNTIRVWELDTLE--PVMTLNDHTDAPMSLLCW----DQFLLSCSLDHTIKVWFATGRGNLE--AAY  312 (394)
Q Consensus       245 ----~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~----~~~l~s~s~Dg~i~vwd~~~~~~~~--~~~  312 (394)
                          +++|++|+.||.|++||+++++  .+..+..|...|.++.|+    +.+|++++.|+.|++||++......  .+.
T Consensus        63 ~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee
Confidence                6789999999999999999887  778888999999999998    5699999999999999998764333  333


Q ss_pred             cccCCcceEEEEeeECC-------------CCCcEEEEEeCCCeEEEEECCCCc----eeEEEe-cCCcEEEEEECCC--
Q 016134          313 THKEDNGVLALGGLNDP-------------DGKPVLICACNDNTVHLYELPSFM----ERGRIF-SKHEVRVIEIGPD--  372 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~-------------~g~~~l~sgs~dg~I~iwd~~~~~----~~~~~~-~~~~v~~l~~sp~--  372 (394)
                      .+.  ..+.++  .|+|             ++. +|++++.||.|++||++++.    ....+. +...|++++|+|+  
T Consensus       143 ~~~--~~v~~l--~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          143 AHA--IGVNSA--SWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CCS--SCEEEE--EECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             cCC--CceEEE--EecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            333  333333  3577             466 89999999999999998874    333333 2667999999999  


Q ss_pred             -C-EEEEEeCCCeEEEEeCCCC
Q 016134          373 -K-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       373 -~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                       + +|++++.||.|++||+.+.
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSS
T ss_pred             CCCEEEEEecCCEEEEecCCCC
Confidence             8 9999999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=8.7e-23  Score=197.20  Aligned_cols=260  Identities=11%  Similarity=0.039  Sum_probs=192.6

Q ss_pred             cCCCCCcccccccCC--CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE
Q 016134           89 SGSEDRIPHVRNREN--PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM  166 (394)
Q Consensus        89 s~s~d~~~~~w~~~~--~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~  166 (394)
                      +++.|+.+++|.++.  +.+....          ....+ ..+.+++ ++|.+.+++++..    ++.|++||+.++ +.
T Consensus        94 ~~~~~~~~~l~~~d~~~~~~~~~~----------~~~~~-~~~~~~~-~s~~~~~~~~~~~----~~~i~~~d~~~g-~~  156 (433)
T 3bws_A           94 RKPEELNEKLIALDKEGITHRFIS----------RFKTG-FQPKSVR-FIDNTRLAIPLLE----DEGMDVLDINSG-QT  156 (433)
T ss_dssp             SSGGGGTTCEEECCBTTCSEEEEE----------EEECS-SCBCCCE-ESSSSEEEEEBTT----SSSEEEEETTTC-CE
T ss_pred             cccCCCceEEEEECCCCCcceEEE----------EEcCC-CCceEEE-EeCCCeEEEEeCC----CCeEEEEECCCC-eE
Confidence            566777777776654  3211100          01111 1234566 7886666665443    448999999887 45


Q ss_pred             EE-----EecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          167 LA-----KLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       167 ~~-----~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      +.     .+.+|...|.+++|+++++++++++.|+.  +||+++++.....                     ..|...+.
T Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~---------------------~~~~~~~~  215 (433)
T 3bws_A          157 VRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV---------------------DLTGKWSK  215 (433)
T ss_dssp             EEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE---------------------ECSSSSEE
T ss_pred             eeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE---------------------cCCCCCee
Confidence            55     45689999999999999999999999998  6999887765311                     14566777


Q ss_pred             EEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe--------CCCcEEEEEeCCCc
Q 016134          240 CLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS--------LDHTIKVWFATGRG  306 (394)
Q Consensus       240 ~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s--------~Dg~i~vwd~~~~~  306 (394)
                      +++|+  ++.+ ++++.|+.|++||+++++.+..+..+ ..+.+++++  +++|++++        .|+.|++||+++++
T Consensus       216 ~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~  294 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK  294 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred             EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence            77776  4555 55568999999999999988888754 458999998  67888887        58899999999876


Q ss_pred             eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeC-----
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDG-----  380 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~-----  380 (394)
                      .+..+. +..  ...  .+.|+|+++.++++++.|+.|++||+.+++.+..+.....+.+++|+|++ +|++++.     
T Consensus       295 ~~~~~~-~~~--~~~--~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  369 (433)
T 3bws_A          295 LIDTIG-PPG--NKR--HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHP  369 (433)
T ss_dssp             EEEEEE-EEE--CEE--EEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCT
T ss_pred             EEeecc-CCC--Ccc--eEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcc
Confidence            655542 222  222  33479999867788899999999999999888888878889999999999 7777776     


Q ss_pred             ----------CCeEEEEeCCCC
Q 016134          381 ----------AGMLGVWKLLAK  392 (394)
Q Consensus       381 ----------Dg~I~vWd~~~~  392 (394)
                                ||.|++||+.+.
T Consensus       370 ~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          370 TEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             TTCTTSCCSSCCEEEEEETTTT
T ss_pred             ccccccccccceEEEEEECCCC
Confidence                      579999998753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=2.3e-21  Score=184.61  Aligned_cols=214  Identities=10%  Similarity=0.101  Sum_probs=169.4

Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEE-EEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKL-FSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      ++.++.|++||+.++ +++..+..|. .+.+++|+|++++| ++++.|+.  +||+++++.+.....             
T Consensus         8 ~~~d~~v~v~d~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-------------   72 (391)
T 1l0q_A            8 NSESDNISVIDVTSN-KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-------------   72 (391)
T ss_dssp             ETTTTEEEEEETTTT-EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-------------
T ss_pred             cCCCCEEEEEECCCC-eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-------------
Confidence            445669999999887 7788888775 48999999999987 67778888  699998887643221             


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEE-EEEeCCCcEEE
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFL-LSCSLDHTIKV  299 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~Dg~i~v  299 (394)
                               ...+.+++|+  +++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|+  +++| ++++.|+.|++
T Consensus        73 ---------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           73 ---------GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV  142 (391)
T ss_dssp             ---------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ---------CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence                     2266777776  4555 45567799999999999988888754 568999998  5666 68888999999


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg  378 (394)
                      ||+.+++.+..+..+..   ..  .+.|+|+++.++++++.|+.|++||+++++....+.....+.+++|+|++ +|+++
T Consensus       143 ~d~~~~~~~~~~~~~~~---~~--~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          143 INTVTKAVINTVSVGRS---PK--GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EETTTTEEEEEEECCSS---EE--EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEE
T ss_pred             EECCCCcEEEEEecCCC---cc--eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEE
Confidence            99998877766654432   22  33479999855578889999999999999888888777789999999999 77777


Q ss_pred             e---CCCeEEEEeCCCC
Q 016134          379 D---GAGMLGVWKLLAK  392 (394)
Q Consensus       379 s---~Dg~I~vWd~~~~  392 (394)
                      +   .++.|++||+.+.
T Consensus       218 ~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EECSSCCEEEEEETTTT
T ss_pred             ecCcCCCcEEEEECCCC
Confidence            7   7899999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=5.7e-22  Score=191.48  Aligned_cols=255  Identities=10%  Similarity=-0.016  Sum_probs=178.6

Q ss_pred             ccccccc--CCCCCCCCCCCCCCccccccCCCCccceeeecccccc--------------ccccCCCeecCCC--CCeEE
Q 016134           95 IPHVRNR--ENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVC--------------CHWLLGNCVRGDE--CRFLH  156 (394)
Q Consensus        95 ~~~~w~~--~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~--------------~~~~~~~~~~g~~--~~~i~  156 (394)
                      ++++||+  .++......          ...+|...++.++ +++.              +..++..+.+.+.  .+.|+
T Consensus        94 ~i~lwd~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~  162 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQN----------SYKVNKQWLRYAG-HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR  162 (415)
T ss_dssp             EEEEEECSSSTTCEEEEE----------EEEECGGGHHHHH-HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE
T ss_pred             EEEEEeCCCCCCCEEeee----------EEEcChhHHHHHH-HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE
Confidence            8999999  777643111          2445555666655 5542              3344443333221  16999


Q ss_pred             EEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC---c--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          157 SWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG---T--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       157 iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      +||+...  ..+.+.+|...|.+++|+|++++|++++.|+   .  +||+++++...+..+                   
T Consensus       163 i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-------------------  221 (415)
T 2hqs_A          163 VSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-------------------  221 (415)
T ss_dssp             EEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-------------------
T ss_pred             EEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-------------------
Confidence            9999743  4677788999999999999999999999886   3  699999887655444                   


Q ss_pred             CCCCCCEEEEEec--CCeEE-EEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC--cEEEEE
Q 016134          232 DGHTRPVTCLAVG--RSRLC-SGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH--TIKVWF  301 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~-sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg--~i~vwd  301 (394)
                         ...+.+++|+  ++.|+ +++.|+  .|++||+++++. ..+..|...+.++.|+  +++|++++. ++  .|.+||
T Consensus       222 ---~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          222 ---PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             ---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ---CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence               3455556665  45555 666555  499999998776 5677788899999998  778888776 44  677778


Q ss_pred             eCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---CeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEE
Q 016134          302 ATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~t  377 (394)
                      +.+++.. .+..+.  .  ......|+|+|+ +|++++.+   ..|++||+.+++.. .+.....+.+++|+|++ +|++
T Consensus       298 ~~~~~~~-~l~~~~--~--~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~  370 (415)
T 2hqs_A          298 INGGAPQ-RITWEG--S--QNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIY  370 (415)
T ss_dssp             TTSSCCE-ECCCSS--S--EEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEE
T ss_pred             CCCCCEE-EEecCC--C--cccCeEECCCCC-EEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEE
Confidence            8766532 222222  1  223446799999 66666543   58999999988764 33334479999999999 7888


Q ss_pred             EeCCC---eEEEEeCCCC
Q 016134          378 GDGAG---MLGVWKLLAK  392 (394)
Q Consensus       378 gs~Dg---~I~vWd~~~~  392 (394)
                      ++.|+   .|.+||+..+
T Consensus       371 ~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          371 SSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEEETTEEEEEEEETTSC
T ss_pred             EEcCCCccEEEEEECCCC
Confidence            87776   7999998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.6e-21  Score=190.63  Aligned_cols=285  Identities=9%  Similarity=0.041  Sum_probs=206.3

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc--
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC--  160 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~--  160 (394)
                      ++..+++++.|++|.+||.+++.....           ...|+.  +..++ ++|++.++.+++.+    +.|++||+  
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~-----------i~~g~~--~~~v~-~spdg~~l~v~~~d----~~V~v~D~~~  209 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKV-----------IDTGYA--VHISR-MSASGRYLLVIGRD----ARIDMIDLWA  209 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEE-----------EECSTT--EEEEE-ECTTSCEEEEEETT----SEEEEEETTS
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEE-----------EecCcc--cceEE-ECCCCCEEEEECCC----CeEEEEECcC
Confidence            566778889999999999998876431           222443  67777 99999999877655    49999999  


Q ss_pred             CCCceEEEEecccCCCeEEEEecC----CCCEEEEEeC-CCc--eeecCCCcEEEe-cC-----------CCCcEEEEEE
Q 016134          161 GEGLTMLAKLEGHEKAVSGIALPL----RSDKLFSGSR-DGT--AWNIESSAEFSL-DG-----------PVGEVYSMVV  221 (394)
Q Consensus       161 ~~~~~~~~~l~~h~~~V~~l~~s~----~~~~l~sgs~-Dg~--vWd~~~~~~~~~-~~-----------~~~~v~~l~~  221 (394)
                      .++ +++.++. +...+..++|+|    ++++|++++. +++  |||..+++.+.. ..           +...+..+.+
T Consensus       210 ~t~-~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~  287 (543)
T 1nir_A          210 KEP-TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA  287 (543)
T ss_dssp             SSC-EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             CCC-cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence            665 7777777 455689999999    9999999985 666  699999887632 22           1236888999


Q ss_pred             cCC--EEEEEecC--------------------CCCCCEEEEEec--CCeEEEE-eCCCeEEEEeCCCCceeEEEcC---
Q 016134          222 ANE--MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSG-SMDNTIRVWELDTLEPVMTLND---  273 (394)
Q Consensus       222 ~~~--~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sg-s~Dg~V~iwd~~~~~~~~~~~~---  273 (394)
                      +++  .+++...+                    .+...+..+.|+  +++|+++ ..+++|.+||+++++++..+..   
T Consensus       288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~  367 (543)
T 1nir_A          288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  367 (543)
T ss_dssp             CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence            885  33332221                    122344456776  5665554 5689999999999999988874   


Q ss_pred             -CCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCC-------CceeeEeecccCCcceEEEEeeECCCCCcEEEEEe---
Q 016134          274 -HTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATG-------RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC---  339 (394)
Q Consensus       274 -h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs---  339 (394)
                       |.+....+...  +.+++++. .|++|.+||+.+       .+.++.+..+......+    .++|+++ .|.+++   
T Consensus       368 ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v----~~~pdg~-~l~v~~~~~  442 (543)
T 1nir_A          368 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI----KTHPKSS-HLYVDTTFN  442 (543)
T ss_dssp             BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE----ECCTTCC-EEEECCTTC
T ss_pred             CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE----EcCCCCC-cEEEecCCC
Confidence             65555554322  45666665 589999999987       67777777665433323    3599999 777776   


Q ss_pred             ----CCCeEEEEECCCCcee-EEE---------ecCCcEEEEEECCCC-EEEEE-----eCCCeEEEEeCCCC
Q 016134          340 ----NDNTVHLYELPSFMER-GRI---------FSKHEVRVIEIGPDK-LFFTG-----DGAGMLGVWKLLAK  392 (394)
Q Consensus       340 ----~dg~I~iwd~~~~~~~-~~~---------~~~~~v~~l~~sp~~-~l~tg-----s~Dg~I~vWd~~~~  392 (394)
                          .+++|.|||+.+++.. ..+         .+...+..++|+|+| .|+.+     +.|+.|.|||..+.
T Consensus       443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence                2679999999999877 333         125679999999999 55544     24899999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=3.2e-19  Score=172.12  Aligned_cols=242  Identities=10%  Similarity=-0.007  Sum_probs=173.4

Q ss_pred             ccccccCCCC------CcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEE
Q 016134           84 NLWVSSGSED------RIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHS  157 (394)
Q Consensus        84 ~~~~~s~s~d------~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~i  157 (394)
                      +.+++..+.+      +++++||+++....             ...+|...+.+++ |+|++.+++..+.++. ...|++
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~-------------~l~~~~~~v~~~~-~Spdg~~la~~s~~~~-~~~i~~  207 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQF-------------VVHRSPQPLMSPA-WSPDGSKLAYVTFESG-RSALVI  207 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCE-------------EEEEESSCEEEEE-ECTTSSEEEEEECTTS-SCEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCE-------------EEeCCCCcceeeE-EcCCCCEEEEEEecCC-CcEEEE
Confidence            4455554443      79999999854321             2345566788898 9999999988776542 358999


Q ss_pred             EEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134          158 WFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       158 Wd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                      ||+.++ +. ..+..|...+.+++|+|||++|+ +++.|+.    +||+++++...+..                     
T Consensus       208 ~d~~tg-~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~---------------------  264 (415)
T 2hqs_A          208 QTLANG-AV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---------------------  264 (415)
T ss_dssp             EETTTC-CE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC---------------------
T ss_pred             EECCCC-cE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC---------------------
Confidence            999887 33 35778899999999999999888 7777765    58998887765543                     


Q ss_pred             CCCCCEEEEEec--CCeEEEEeC-CC--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC---CcEEEEEe
Q 016134          233 GHTRPVTCLAVG--RSRLCSGSM-DN--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD---HTIKVWFA  302 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~~l~sgs~-Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D---g~i~vwd~  302 (394)
                       |...+.+++|+  ++.|++++. ++  .|.+||+.+++. ..+..+...+.++.|+  +++|++++.+   ..|++||+
T Consensus       265 -~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          265 -GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             -CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence             44455666665  566776665 44  678889987764 4455677788899998  7888887764   58999999


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC---eEEEEECCCCceeEEEec-CCcEEEEEECCCC
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN---TVHLYELPSFMERGRIFS-KHEVRVIEIGPDK  373 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~  373 (394)
                      .+++.. .+..+.   ...  ...|+|+|+ +|++++.++   .|++||+.... ...+.. ...|.+++|+|..
T Consensus       343 ~~~~~~-~l~~~~---~~~--~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          343 ATGGVQ-VLSSTF---LDE--TPSLAPNGT-MVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTCCEE-ECCCSS---SCE--EEEECTTSS-EEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCC
T ss_pred             CCCCEE-EecCCC---CcC--CeEEcCCCC-EEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccc
Confidence            877653 333322   222  335799999 677776666   89999997544 444443 6789999999964

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=3.5e-19  Score=165.69  Aligned_cols=268  Identities=12%  Similarity=0.170  Sum_probs=172.1

Q ss_pred             ccCCCCCcccccccCC-CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC--CC-
Q 016134           88 SSGSEDRIPHVRNREN-PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--EG-  163 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--~~-  163 (394)
                      ++.+.|+.+++|+++. +.... .          ....+...+..++ ++|++.+++.++.+   ++.|++|++.  ++ 
T Consensus         9 ~~~~~~~~v~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~-~spdg~~l~~~~~~---~~~v~~~~~~~~~~~   73 (343)
T 1ri6_A            9 IASPESQQIHVWNLNHEGALTL-T----------QVVDVPGQVQPMV-VSPDKRYLYVGVRP---EFRVLAYRIAPDDGA   73 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEE-E----------EEEECSSCCCCEE-ECTTSSEEEEEETT---TTEEEEEEECTTTCC
T ss_pred             EeCCCCCeEEEEEECCCCcEEE-e----------eeEecCCCCceEE-ECCCCCEEEEeecC---CCeEEEEEecCCCCc
Confidence            4457799999999963 22110 0          1112334566777 99999988765554   2599999996  43 


Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      .+.+..+..+. .+..++|+|++++|++++. ++.  +||+..+.......                  .. .....+.+
T Consensus        74 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~------------------~~-~~~~~~~~  133 (343)
T 1ri6_A           74 LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD------------------VV-EGLDGCHS  133 (343)
T ss_dssp             EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE------------------EE-CCCTTBCC
T ss_pred             eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccc------------------cc-cCCCCceE
Confidence            24455555544 8899999999998877765 565  69985332211100                  00 12234666


Q ss_pred             EEec--CCeEEEEe-CCCeEEEEeCCC-CceeE----EEcC-CCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCC--Cc
Q 016134          241 LAVG--RSRLCSGS-MDNTIRVWELDT-LEPVM----TLND-HTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATG--RG  306 (394)
Q Consensus       241 l~~~--~~~l~sgs-~Dg~V~iwd~~~-~~~~~----~~~~-h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~--~~  306 (394)
                      ++|+  +++|++++ .++.|++||+.+ ++...    .+.. ....+..++|+  +++|++++ .++.|.+||+..  ++
T Consensus       134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN  213 (343)
T ss_dssp             CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred             EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            7776  55677666 899999999987 55432    2332 33467889998  66665554 789999999954  22


Q ss_pred             e--eeEeecccCC--cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC----CceeEEEecCCcEEEEEECCCC-EEEE
Q 016134          307 N--LEAAYTHKED--NGVLALGGLNDPDGKPVLICACNDNTVHLYELPS----FMERGRIFSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       307 ~--~~~~~~~~~~--~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~----~~~~~~~~~~~~v~~l~~sp~~-~l~t  377 (394)
                      .  ..........  .......+.|+|+++.++++...++.|.+||+..    .+.+..+.....+..++|+|++ +|++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred             EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEE
Confidence            2  1222211111  1112223457999985555677899999999982    2344444444558999999999 6777


Q ss_pred             Ee-CCCeEEEEeCC
Q 016134          378 GD-GAGMLGVWKLL  390 (394)
Q Consensus       378 gs-~Dg~I~vWd~~  390 (394)
                      ++ .++.|.+|+++
T Consensus       294 ~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          294 AGQKSHHISVYEIV  307 (343)
T ss_dssp             ECTTTCEEEEEEEE
T ss_pred             ecCCCCeEEEEEEc
Confidence            76 68999999665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=1.3e-18  Score=173.44  Aligned_cols=248  Identities=10%  Similarity=0.047  Sum_probs=186.4

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeec--CCCcEEEec
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNI--ESSAEFSLD  210 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~--~~~~~~~~~  210 (394)
                      ++|.+.++++...++    +|.+||..++ +++.++..+.. +..++|+|++++|++++.|+.  +||+  .+++.+...
T Consensus       145 ~~p~~~~~vs~~~d~----~V~v~D~~t~-~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          145 LDLPNLFSVTLRDAG----QIALVDGDSK-KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCGGGEEEEEEGGGT----EEEEEETTTC-CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             cCCCCEEEEEEcCCC----eEEEEECCCc-eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            667777666555444    9999999887 77888874333 899999999999999999988  6999  788776444


Q ss_pred             CCCCcEEEEEEcC----C--EEEEEecC-------------------C----------C-CCCEEEEEec---CCeEEEE
Q 016134          211 GPVGEVYSMVVAN----E--MLFAGAQD-------------------G----------H-TRPVTCLAVG---RSRLCSG  251 (394)
Q Consensus       211 ~~~~~v~~l~~~~----~--~l~~~~~~-------------------~----------h-~~~V~~l~~~---~~~l~sg  251 (394)
                      .....+..++|+|    +  .++++...                   .          | ...+.++.++   +.++++.
T Consensus       219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            4566789999998    7  67776642                   1          1 1257778886   3457778


Q ss_pred             eCCCeEEEEeCCCCceeE--EEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCCceeeEeecccCCc--ceEEEE
Q 016134          252 SMDNTIRVWELDTLEPVM--TLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGRGNLEAAYTHKEDN--GVLALG  324 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~  324 (394)
                      ..++.|.+||+.+.+.+.  .+. +...+..+.|+  +++|++++ .+++|.+||+.+++.+..+.....+.  ....+ 
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-  376 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-  376 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred             CCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence            889999999998866544  443 56678888888  67666554 58999999999998877766432222  22333 


Q ss_pred             eeECCCCCcEEEEEe-CCCeEEEEECCC-------CceeEEEec-CCcEEEEEECCCC-EEEEEe-------CCCeEEEE
Q 016134          325 GLNDPDGKPVLICAC-NDNTVHLYELPS-------FMERGRIFS-KHEVRVIEIGPDK-LFFTGD-------GAGMLGVW  387 (394)
Q Consensus       325 ~~~s~~g~~~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs-------~Dg~I~vW  387 (394)
                        ++|++..+++++. .|++|.+||+.+       ++.+..+.. ...+..++++|++ +|++++       .+++|.||
T Consensus       377 --~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~  454 (543)
T 1nir_A          377 --VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  454 (543)
T ss_dssp             --EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred             --CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence              3777554788876 589999999998       788888876 4567889999999 888876       27799999


Q ss_pred             eCCCC
Q 016134          388 KLLAK  392 (394)
Q Consensus       388 d~~~~  392 (394)
                      |+.+.
T Consensus       455 d~~~~  459 (543)
T 1nir_A          455 DLKNL  459 (543)
T ss_dssp             ETTCT
T ss_pred             ECCCC
Confidence            99865

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=2.1e-19  Score=185.60  Aligned_cols=306  Identities=10%  Similarity=-0.025  Sum_probs=201.2

Q ss_pred             CCCcccccccccccccCCC-CC-----cccccccCCCCCCCCCCCCCCc------cccc------cCCCCccceeeeccc
Q 016134           74 SPPSYNRLKNNLWVSSGSE-DR-----IPHVRNRENPGYTGPKNSSSAS------STVS------DESGDKSTSKKTTLK  135 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~-d~-----~~~~w~~~~~~~~~~~~s~~~~------~~~~------~~~g~~~~v~~~~~~  135 (394)
                      ...+|++  ++.++++++. |+     ++++||++++............      +..+      +.......+..++ |
T Consensus        40 ~~~~~Sp--dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~  116 (741)
T 2ecf_A           40 MKPKVAP--DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ-W  116 (741)
T ss_dssp             EEEEECT--TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE-E
T ss_pred             CCceEec--CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE-E
Confidence            3456777  8889999888 87     8999999988642111000000      0000      0000002367787 9


Q ss_pred             cccccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCC
Q 016134          136 NVCCHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPV  213 (394)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~  213 (394)
                      +|++.+++..+.     +.|++||+.++. .....+..|...+..++|+|||++|+.++.+.. +||+.+++...+....
T Consensus       117 SpDg~~l~~~~~-----~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          117 SPDAQRLLFPLG-----GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             CTTSSEEEEEET-----TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCC
T ss_pred             CCCCCEEEEEeC-----CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCC
Confidence            999999987664     599999997751 034567788899999999999999999986533 6999988776554322


Q ss_pred             Cc-----------------EEEEEEcCC--EEEEEecCC-----------------------------------------
Q 016134          214 GE-----------------VYSMVVANE--MLFAGAQDG-----------------------------------------  233 (394)
Q Consensus       214 ~~-----------------v~~l~~~~~--~l~~~~~~~-----------------------------------------  233 (394)
                      ..                 +..+.|+|+  .|+.+..+.                                         
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            21                 467899998  555543221                                         


Q ss_pred             -------------CCCCEEEEEe-cCCeEEEEeC-----CCeEEEEeCCCCceeEEEcCCCC----CcEEEEEc--CCEE
Q 016134          234 -------------HTRPVTCLAV-GRSRLCSGSM-----DNTIRVWELDTLEPVMTLNDHTD----APMSLLCW--DQFL  288 (394)
Q Consensus       234 -------------h~~~V~~l~~-~~~~l~sgs~-----Dg~V~iwd~~~~~~~~~~~~h~~----~v~~l~~~--~~~l  288 (394)
                                   |...+..++| +++.|++++.     +..|++||+.++++...+..+..    .+..+.|+  ++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence                         2334555666 2456766553     67899999999988777665543    34577887  7788


Q ss_pred             EEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECCC-CceeEEEecCCcEE
Q 016134          289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELPS-FMERGRIFSKHEVR  365 (394)
Q Consensus       289 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~~-~~~~~~~~~~~~v~  365 (394)
                      ++++.|+.++||.+........+..+...  +..+ ..|+|+++.++++++.++  .++||++.. +.....+.....+.
T Consensus       352 ~~~~~~g~~~l~~~~~~~~~~~l~~~~~~--v~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~  428 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKGKAAALTHGNWS--VDEL-LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMH  428 (741)
T ss_dssp             EEECTTSSCEEEEECSSSCEEESCCSSSC--EEEE-EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEE
T ss_pred             EEecCCCccEEEEEcCCCCeeeeeecceE--EEeE-eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCce
Confidence            89999998888887632224444433322  2211 136999985556677666  899999864 44455555566789


Q ss_pred             EEEECCCC-EEEEE-eCC---CeEEEEeCC
Q 016134          366 VIEIGPDK-LFFTG-DGA---GMLGVWKLL  390 (394)
Q Consensus       366 ~l~~sp~~-~l~tg-s~D---g~I~vWd~~  390 (394)
                      .++|+||+ +|+.. +..   ..+.+|+..
T Consensus       429 ~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          429 SASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             EEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            99999999 55444 333   467888764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=2.1e-18  Score=160.29  Aligned_cols=263  Identities=10%  Similarity=0.061  Sum_probs=176.0

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT  165 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~  165 (394)
                      .+++.+.++++++||++++......           ..+ .... .++ ++|++.++.....   .++.|.+||..++..
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~-----------~~~-~~~~-~~~-~s~dg~~l~~~~~---~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQI-----------TLG-YDFV-DTA-ITSDCSNVVVTSD---FCQTLVQIETQLEPP   74 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEE-----------ECC-CCEE-EEE-ECSSSCEEEEEES---TTCEEEEEECSSSSC
T ss_pred             EEEEecCCCeEEEEeCcccceeeeE-----------Ecc-CCcc-eEE-EcCCCCEEEEEeC---CCCeEEEEECCCCce
Confidence            3567788999999999988764311           112 2234 677 9999987664443   234999999988743


Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeCCC---c--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDG---T--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      ....+..+..++.+++|+|++++|+++..++   .  +||+++++.+.....                      .....+
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----------------------~~~~~~  132 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----------------------PYDAVG  132 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----------------------CTTEEE
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----------------------CCCccc
Confidence            3677777777777799999999999555552   4  699998877643221                      223456


Q ss_pred             EEec--CCe-EEEEeCCCe-EEEEeCCCCcee----EEEcCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEeCCCce--
Q 016134          241 LAVG--RSR-LCSGSMDNT-IRVWELDTLEPV----MTLNDHTDAPMSLLCW--DQFLL-SCSLDHTIKVWFATGRGN--  307 (394)
Q Consensus       241 l~~~--~~~-l~sgs~Dg~-V~iwd~~~~~~~----~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~i~vwd~~~~~~--  307 (394)
                      ++|+  +++ +++...++. |.+|++.....+    .........+..+.|+  +++|+ ++..++.|.+||+.+++.  
T Consensus       133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT  212 (331)
T ss_dssp             EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred             eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence            6776  444 444455678 999998754332    1122334567889998  66554 445689999999988777  


Q ss_pred             -eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce--eEEEecC--------CcEEEEEECCCC-EE
Q 016134          308 -LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--RGRIFSK--------HEVRVIEIGPDK-LF  375 (394)
Q Consensus       308 -~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~--------~~v~~l~~sp~~-~l  375 (394)
                       +..+.... ....    +.|+|+|+.++++...++.|.+||+.+++.  +..+...        .....++|+|++ +|
T Consensus       213 ~~~~~~~~~-~~~~----~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  287 (331)
T 3u4y_A          213 LLNAVGTNN-LPGT----IVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL  287 (331)
T ss_dssp             EEEEEECSS-CCCC----EEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred             eeeeccCCC-CCce----EEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence             55444321 1222    236999995555555678999999998876  3333221        123568999999 55


Q ss_pred             E-EEeCCCeEEEEeCCCC
Q 016134          376 F-TGDGAGMLGVWKLLAK  392 (394)
Q Consensus       376 ~-tgs~Dg~I~vWd~~~~  392 (394)
                      + ++..++.|.+||+..+
T Consensus       288 ~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          288 FISANISRELKVFTISGK  305 (331)
T ss_dssp             EEEETTTTEEEEEETTSC
T ss_pred             EEecCCCCcEEEEEecCC
Confidence            4 5556779999999764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=7.8e-19  Score=180.77  Aligned_cols=301  Identities=9%  Similarity=-0.061  Sum_probs=195.4

Q ss_pred             CCCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc---ceeeeccccccccccCCCeec
Q 016134           72 KKSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS---TSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        72 ~~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~---~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      .....+|++  ++..+++ +.|+++++||++++....            ...++..   .+..++ ++|++.+++.+..+
T Consensus        18 ~~~~~~~sp--dg~~~~~-~~dg~i~~~d~~~g~~~~------------~~~~~~~~~~~v~~~~-~SpDg~~l~~~~~~   81 (723)
T 1xfd_A           18 HDPEAKWIS--DTEFIYR-EQKGTVRLWNVETNTSTV------------LIEGKKIESLRAIRYE-ISPDREYALFSYNV   81 (723)
T ss_dssp             CCCCCCBSS--SSCBCCC-CSSSCEEEBCGGGCCCEE------------EECTTTTTTTTCSEEE-ECTTSSEEEEEESC
T ss_pred             cccccEEcC--CCcEEEE-eCCCCEEEEECCCCcEEE------------EeccccccccccceEE-ECCCCCEEEEEecC
Confidence            346678888  7776655 789999999999887532            1122222   478888 99999999877655


Q ss_pred             CCC-----CCeEEEEEcCCCce-EEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecC-CCCc-----
Q 016134          149 GDE-----CRFLHSWFCGEGLT-MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDG-PVGE-----  215 (394)
Q Consensus       149 g~~-----~~~i~iWd~~~~~~-~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~-~~~~-----  215 (394)
                      ...     ++.|++||+.++.. .+....+|...+..++|+|||++|+.++.... +||+.+++...+.. +...     
T Consensus        82 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g  161 (723)
T 1xfd_A           82 EPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNG  161 (723)
T ss_dssp             CCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred             ccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECc
Confidence            432     47999999987632 22333456666999999999999999987433 69988887664432 2222     


Q ss_pred             -------------EEEEEEcCC--EEEEEecCCC--------------CCCEEEEEec--CCeEEEEeCCCeEEEEeCCC
Q 016134          216 -------------VYSMVVANE--MLFAGAQDGH--------------TRPVTCLAVG--RSRLCSGSMDNTIRVWELDT  264 (394)
Q Consensus       216 -------------v~~l~~~~~--~l~~~~~~~h--------------~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~  264 (394)
                                   +..++|+|+  .|+.+..+..              ...+..+.|.  +..    ..+..|++||+.+
T Consensus       162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~  237 (723)
T 1xfd_A          162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNG  237 (723)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSS
T ss_pred             ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCC
Confidence                         368899988  6666665432              2234444443  211    2234899999998


Q ss_pred             CceeEEEcCC------CCCcEEEEEc--CCEEEEEeC----CCcEEEEEeCCCceeeEeecccC-CcceEEEEeeECCCC
Q 016134          265 LEPVMTLNDH------TDAPMSLLCW--DQFLLSCSL----DHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDG  331 (394)
Q Consensus       265 ~~~~~~~~~h------~~~v~~l~~~--~~~l~s~s~----Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g  331 (394)
                      ++....+..+      ...+..+.|+  +++|++.+.    +..|++||+.+++....+..+.. ..........|+|||
T Consensus       238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS
T ss_pred             CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC
Confidence            8876677654      5678889998  667766543    35799999988776555433221 111000123479999


Q ss_pred             CcEEEE-EeCCC------eEEEEE-CCCCce--eEEEec-CCcEEE-EEECCCC-EEEEEe-CC--CeEEEEeCCCC
Q 016134          332 KPVLIC-ACNDN------TVHLYE-LPSFME--RGRIFS-KHEVRV-IEIGPDK-LFFTGD-GA--GMLGVWKLLAK  392 (394)
Q Consensus       332 ~~~l~s-gs~dg------~I~iwd-~~~~~~--~~~~~~-~~~v~~-l~~sp~~-~l~tgs-~D--g~I~vWd~~~~  392 (394)
                      +.+++. +..++      .|.+|| ...+..  ...+.. ...+.. ++|+||+ .|+..+ .+  +.++||+++..
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            955554 55677      566777 344331  333332 334554 6999999 665544 44  78999998653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=3.8e-19  Score=161.33  Aligned_cols=247  Identities=10%  Similarity=0.010  Sum_probs=171.1

Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC-CceE
Q 016134           88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE-GLTM  166 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~-~~~~  166 (394)
                      .+++.|+++++||++++....             ..++...+.++. ++|++.+++.+.     ++.|++||+.+ + +.
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~-------------~~~~~~~v~~~~-~spdg~~l~~~~-----~~~i~~~d~~~~~-~~   75 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRV-------------VWQTPELFEAPN-WSPDGKYLLLNS-----EGLLYRLSLAGDP-SP   75 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEE-------------EEEESSCCEEEE-ECTTSSEEEEEE-----TTEEEEEESSSCC-SC
T ss_pred             CCCCcceeEEEEeCCCCceee-------------eccCCcceEeeE-ECCCCCEEEEEc-----CCeEEEEeCCCCC-Cc
Confidence            346779999999998776431             233456788888 999999988753     34899999988 6 55


Q ss_pred             EEEeccc-CCCeEEEEecCCCCEEEEEeCC--Cc--eeec--CCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          167 LAKLEGH-EKAVSGIALPLRSDKLFSGSRD--GT--AWNI--ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       167 ~~~l~~h-~~~V~~l~~s~~~~~l~sgs~D--g~--vWd~--~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      ...+.+| ...|.+++|+|++++|++++.+  +.  ||.+  .++....+.                       +...+.
T Consensus        76 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------------~~~~~~  132 (297)
T 2ojh_A           76 EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT-----------------------KNLPSY  132 (297)
T ss_dssp             EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC-----------------------SSSSEE
T ss_pred             eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee-----------------------cCCCcc
Confidence            5566566 4789999999999999999944  22  6654  444433322                       122366


Q ss_pred             EEEec--CCeEE-EEeCCCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeC-CCceeeEe
Q 016134          240 CLAVG--RSRLC-SGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFAT-GRGNLEAA  311 (394)
Q Consensus       240 ~l~~~--~~~l~-sgs~Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~-~~~~~~~~  311 (394)
                      .++|+  ++.|+ ++..|+.++||+++. ......+..+...+.++.|+  +++|+.++ .++.+++|++. .......+
T Consensus       133 ~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~  212 (297)
T 2ojh_A          133 WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI  212 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred             ceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence            66775  45555 788899999998532 23445667788889999998  67777665 58999999986 44444444


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCC-----------CeEEEEECCCCceeEEE---ecCCcEEEEEECCCC-EEE
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACND-----------NTVHLYELPSFMERGRI---FSKHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~---~~~~~v~~l~~sp~~-~l~  376 (394)
                      ..+.    .......|+|+++ +|++++.+           +.|++||+.+++.....   .+...+..++|+|++ .|+
T Consensus       213 ~~~~----~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  287 (297)
T 2ojh_A          213 TDSA----YGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFA  287 (297)
T ss_dssp             CCCS----EEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEE
T ss_pred             ecCC----cccCCeEECCCCC-EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEE
Confidence            4332    2223345799999 66666554           57999999987653332   235678999999999 777


Q ss_pred             EEeCCC
Q 016134          377 TGDGAG  382 (394)
Q Consensus       377 tgs~Dg  382 (394)
                      +++.|.
T Consensus       288 ~~~~~~  293 (297)
T 2ojh_A          288 YVRYFP  293 (297)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            666543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=1.5e-18  Score=160.96  Aligned_cols=260  Identities=12%  Similarity=0.022  Sum_probs=175.8

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc-ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS-TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~-~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      .+++++.|.++++||++++.....           ...++.. .+..+. ++|++.++....   ..++.|.+||+.++ 
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~-~s~dg~~l~v~~---~~~~~v~~~d~~~~-   66 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKV-----------ITIADAGPTPMVPM-VAPGGRIAYATV---NKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEE-----------EECTTCTTCCCCEE-ECTTSSEEEEEE---TTTTEEEEEETTTC-
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEE-----------EEcCCCCCCccceE-EcCCCCEEEEEe---CCCCeEEEEECCCC-
Confidence            567888899999999998765321           1222211 245666 899887654332   23458999999887 


Q ss_pred             eEEEEec-cc----CCCeEEEEecCCCCEEEEEe------------CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          165 TMLAKLE-GH----EKAVSGIALPLRSDKLFSGS------------RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       165 ~~~~~l~-~h----~~~V~~l~~s~~~~~l~sgs------------~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      +.+..+. ++    ...+..++|+|++++|+++.            .++.  +||+++++.......             
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------  133 (337)
T 1pby_B           67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------  133 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------
T ss_pred             CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------
Confidence            5555444 22    23678899999999999886            4566  699988776532211             


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCcEEEEEcCCEEEEEeC-CC-----
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT--DAPMSLLCWDQFLLSCSL-DH-----  295 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~-Dg-----  295 (394)
                               ...+.+++|+  +++|+++  ++.|.+||+++++.+..+..+.  .++ .+...+..|+..+. ++     
T Consensus       134 ---------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          134 ---------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             ---------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEE
T ss_pred             ---------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc-eeCCCccEEeeeccCCCceeee
Confidence                     1234455665  5566666  6889999999999888776543  322 22222444433332 22     


Q ss_pred             ------------------cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE
Q 016134          296 ------------------TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR  357 (394)
Q Consensus       296 ------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~  357 (394)
                                        .|.+||+.+++.. .+..........  .+.++|+++ +|+++  ++.|.+||+.+++.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~--~~~~s~dg~-~l~~~--~~~v~~~d~~~~~~~~~  275 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYF--STAVNPAKT-RAFGA--YNVLESFDLEKNASIKR  275 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEE--EEEECTTSS-EEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeccccccccccccccccceEEEeCCCCCce-EeecCCCCCcee--eEEECCCCC-EEEEe--CCeEEEEECCCCcCcce
Confidence                              4789999887664 322222222222  345799999 66666  79999999999988888


Q ss_pred             EecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          358 IFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       358 ~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +.....+.+++|+|++ +|++++.++.|.+||+.+.
T Consensus       276 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            7777788999999999 8888899999999999764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=1.1e-16  Score=149.64  Aligned_cols=248  Identities=8%  Similarity=-0.014  Sum_probs=172.8

Q ss_pred             ceeeeccccccccccCCCeecCC---CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCc--eeec
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGD---ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGT--AWNI  201 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~---~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--vWd~  201 (394)
                      .+..++ ++|++.++...+..+.   .++.|.+||..++ +.+..+.. ...+..++|+|++++++.++ .++.  +||.
T Consensus        42 ~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           42 GAYEMA-YSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             SEEEEE-EETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CccceE-ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            345566 8898888766554432   3679999999887 55666553 34578899999999666554 4566  5999


Q ss_pred             CCCcEEEe-cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe--CCCeEEEEeCCCCceeEEEcCCCC
Q 016134          202 ESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS--MDNTIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       202 ~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      ++++.... ..+...-             ........+.+++|+  ++++++++  .++.|.+||+++++.+..+..+..
T Consensus       119 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  185 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKR-------------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK  185 (353)
T ss_dssp             TTCCEEEEEESCCCCC-------------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred             CCCeeEEEEecCCCcc-------------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence            88887532 1111000             000011125667775  56666555  488999999999999988876666


Q ss_pred             CcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          277 APMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       277 ~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      .+..+.++  +++|++++.++.|.+||+.+++....+.............+.++|+++.++++...++.|.+||+.+++.
T Consensus       186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          186 MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            67888887  7889999999999999999887776665422211222223457999995555555669999999999988


Q ss_pred             eEEEecCCcEEEEEECCCC-EE-EEEeCCCeEEEEeCCCC
Q 016134          355 RGRIFSKHEVRVIEIGPDK-LF-FTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       355 ~~~~~~~~~v~~l~~sp~~-~l-~tgs~Dg~I~vWd~~~~  392 (394)
                      +..+..... ..++|+|++ ++ ++...++.|.+||+.+.
T Consensus       266 ~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          266 LAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            877765443 679999998 44 45557999999998754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=5.6e-17  Score=151.61  Aligned_cols=244  Identities=8%  Similarity=-0.019  Sum_probs=174.0

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG  172 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~  172 (394)
                      +..+.+||.+++......           ..+  ..+..+. +++++.++....   ..++.|.+||..++ +.+..+..
T Consensus        68 ~~~v~~~d~~~~~~~~~~-----------~~~--~~~~~~~-~s~dg~~l~v~~---~~~~~v~~~d~~~~-~~~~~~~~  129 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAI-----------HND--LKPFGAT-INNTTQTLWFGN---TVNSAVTAIDAKTG-EVKGRLVL  129 (353)
T ss_dssp             SEEEEEECTTTCCEEEEE-----------EES--SCCCSEE-EETTTTEEEEEE---TTTTEEEEEETTTC-CEEEEEES
T ss_pred             CccEEEEcCCCCeEEEEE-----------ecC--CCcceEE-ECCCCCEEEEEe---cCCCEEEEEeCCCC-eeEEEEec
Confidence            568999999987753211           111  1244555 888887554322   23449999999887 56666665


Q ss_pred             cCCC---------eEEEEecCCCCEEEEEe--CCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          173 HEKA---------VSGIALPLRSDKLFSGS--RDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       173 h~~~---------V~~l~~s~~~~~l~sgs--~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      +...         +.+++|+|++++|+.++  .++.  +||.++++......                     .+...+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---------------------~~~~~~~  188 (353)
T 3vgz_A          130 DDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---------------------NTGKMST  188 (353)
T ss_dssp             CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---------------------CCCTTCC
T ss_pred             CCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---------------------CCCCccc
Confidence            4432         78999999999888776  3555  59998887664321                     1222344


Q ss_pred             EEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC----CCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeCCCceeeE
Q 016134          240 CLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND----HTDAPMSLLCW--DQFLLSCSL-DHTIKVWFATGRGNLEA  310 (394)
Q Consensus       240 ~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~----h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~~~~~~~~  310 (394)
                      +++|+  +++|++++.++.|.+||+.+++.+..+..    +...+..++++  +++|++++. ++.|.+||+.+++.+..
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            55664  67888888999999999999998887764    45567788888  676666554 59999999998887766


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCC
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                      +.....  .    .+.|+|+++.++++...++.|.+||+.+++.+..+.....+.+++|+|++ +|+.+..+
T Consensus       269 ~~~~~~--~----~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          269 VAAPES--L----AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EECSSC--C----CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEcCCC--c----eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            654321  2    23468999856666667999999999999988888777789999999999 55555544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=6.6e-18  Score=163.87  Aligned_cols=218  Identities=17%  Similarity=0.133  Sum_probs=149.2

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEe-cCCCCcEEEEEEcCCEEEEEec
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      .|++|+....        .+...++.|++++++.+|++++.|+. ||+......... ..+...+  ..+.+...     
T Consensus        24 ~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----   88 (434)
T 2oit_A           24 KVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKI--VDKVQGLL-----   88 (434)
T ss_dssp             EEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCE--EECCCCEE-----
T ss_pred             eEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccc--cccCcccc-----
Confidence            6777765321        23456899999999999999998886 455432111000 0000000  01111100     


Q ss_pred             CCCCCCEEEEEec--CCeEE----EEeCCCeEEEEeCCCC--------ce---eEEEcCCCCCcEEEEEc---CCEEEEE
Q 016134          232 DGHTRPVTCLAVG--RSRLC----SGSMDNTIRVWELDTL--------EP---VMTLNDHTDAPMSLLCW---DQFLLSC  291 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~----sgs~Dg~V~iwd~~~~--------~~---~~~~~~h~~~v~~l~~~---~~~l~s~  291 (394)
                      -.+...|.+++|+  +++|+    +++.|++|+|||+++.        ++   +..+.+|...|.+++|+   +.+|+++
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            0466789999997  67888    7889999999998654        22   45556799999999998   5689999


Q ss_pred             eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----C----Cc
Q 016134          292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----K----HE  363 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~----~~  363 (394)
                      +.|++|++||++++..+.....|...  +.  +++|+|+|+ +|++|+.|++|++||++ ++....+..    .    ..
T Consensus       169 s~Dg~v~iwD~~~~~~~~~~~~~~~~--v~--~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~  242 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCATLPSTVA--VT--SVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR  242 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEEEECGGGC--EE--EEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred             ECCCeEEEEEcCCCcceeeccCCCCc--ee--EEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence            99999999999987655444444432  33  335799998 89999999999999998 555444432    1    27


Q ss_pred             EEEEEECCCC-EE-EEEeCCCe------EEEEeCCCC
Q 016134          364 VRVIEIGPDK-LF-FTGDGAGM------LGVWKLLAK  392 (394)
Q Consensus       364 v~~l~~sp~~-~l-~tgs~Dg~------I~vWd~~~~  392 (394)
                      |.+++|++++ ++ ++...||.      +++|++...
T Consensus       243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999998 33 34445543      899998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=1.4e-17  Score=171.08  Aligned_cols=270  Identities=10%  Similarity=-0.007  Sum_probs=176.5

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .+|++  + ..++. +.|.++++||++++....             ...+...+..+. |+|++.+++.. .+    +.|
T Consensus        87 ~~~sp--d-~~~~~-~~~~~i~~~d~~~~~~~~-------------l~~~~~~~~~~~-~SpdG~~la~~-~~----~~i  143 (706)
T 2z3z_A           87 TLDAG--R-GLVVL-FTQGGLVGFDMLARKVTY-------------LFDTNEETASLD-FSPVGDRVAYV-RN----HNL  143 (706)
T ss_dssp             EEETT--T-TEEEE-EETTEEEEEETTTTEEEE-------------EECCTTCCTTCE-ECTTSSEEEEE-ET----TEE
T ss_pred             EEECC--C-CeEEE-EECCEEEEEECCCCceEE-------------ccCCcccccCCc-CCCCCCEEEEE-EC----CeE
Confidence            34454  5 55554 457999999998876431             111223456667 99999998873 33    489


Q ss_pred             EEEEcCC-----CceEEEEecccCCC--------------eEEEEecCCCCEEEEEeCC---------------------
Q 016134          156 HSWFCGE-----GLTMLAKLEGHEKA--------------VSGIALPLRSDKLFSGSRD---------------------  195 (394)
Q Consensus       156 ~iWd~~~-----~~~~~~~l~~h~~~--------------V~~l~~s~~~~~l~sgs~D---------------------  195 (394)
                      ++||+.+     + +..+....+...              +.+++|+|||++|++++.|                     
T Consensus       144 ~v~~~~~~~~~~g-~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  222 (706)
T 2z3z_A          144 YIARGGKLGEGMS-RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP  222 (706)
T ss_dssp             EEEECBCTTSCCC-CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred             EEEecCcccccCC-CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence            9999987     6 444444444443              4899999999999999833                     


Q ss_pred             ------------Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCC----
Q 016134          196 ------------GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDN----  255 (394)
Q Consensus       196 ------------g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg----  255 (394)
                                  ..  +||+++++...+..                   ...|...+.+++|+  ++.|++++.|+    
T Consensus       223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  283 (706)
T 2z3z_A          223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQT-------------------GEPKEKFLTNLSWSPDENILYVAEVNRAQNE  283 (706)
T ss_dssp             ECCCBTTSCCCEEEEEEEETTTTEEEECCC-------------------CSCTTCEEEEEEECTTSSEEEEEEECTTSCE
T ss_pred             eeCCCCCCCCCeeEEEEEECCCCceEeecc-------------------CCCCceeEeeEEEECCCCEEEEEEeCCCCCe
Confidence                        11  47776665443221                   11455667778886  56788877765    


Q ss_pred             -eEEEEeCCCCceeEEEc--CCCC---CcEEEEEc----CCEEEEEeCCCcEEEEEeC-CCceeeEeecccCCcceEEEE
Q 016134          256 -TIRVWELDTLEPVMTLN--DHTD---APMSLLCW----DQFLLSCSLDHTIKVWFAT-GRGNLEAAYTHKEDNGVLALG  324 (394)
Q Consensus       256 -~V~iwd~~~~~~~~~~~--~h~~---~v~~l~~~----~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~  324 (394)
                       .|++||+.+++....+.  .+..   .+..+.|+    +++|++++.|+.++||++. +++.+..+..+...  +.. .
T Consensus       284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~--v~~-~  360 (706)
T 2z3z_A          284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE--VTN-F  360 (706)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC--EEE-E
T ss_pred             eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE--EEe-e
Confidence             99999999984443332  1222   23456664    5688888899999999886 45555555433222  221 1


Q ss_pred             eeECCCCCcEEEEEeCCC----eEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE-eCC---CeEEEEeCCCC
Q 016134          325 GLNDPDGKPVLICACNDN----TVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG-DGA---GMLGVWKLLAK  392 (394)
Q Consensus       325 ~~~s~~g~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg-s~D---g~I~vWd~~~~  392 (394)
                      ..|+|+++.+++++..++    .|..||+.+++ ...+.+...+..++|+||+ +|+.. +.+   +.|.+||+.+.
T Consensus       361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            347999985556666655    67777877765 3444456679999999999 55554 333   56999998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.77  E-value=1.1e-16  Score=148.49  Aligned_cols=214  Identities=9%  Similarity=0.023  Sum_probs=151.2

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCCcE-EE-ecCCCCcEEEEEEcCCEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESSAE-FS-LDGPVGEVYSMVVANEML  226 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~-~~-~~~~~~~v~~l~~~~~~l  226 (394)
                      ++.|++||..++ +.+..+..+...+ .++|+|++++|++++. ++.  +||+++++. .. +.                
T Consensus        19 ~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------   80 (331)
T 3u4y_A           19 LRRISFFSTDTL-EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ----------------   80 (331)
T ss_dssp             GTEEEEEETTTC-CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE----------------
T ss_pred             CCeEEEEeCccc-ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc----------------
Confidence            349999999887 6666666677777 9999999997777766 666  588888775 22 11                


Q ss_pred             EEEecCCCCCCEEEEEec--CCeEEEEeCCC---eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCc-E
Q 016134          227 FAGAQDGHTRPVTCLAVG--RSRLCSGSMDN---TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHT-I  297 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg---~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~-i  297 (394)
                            .+.....+++|+  +++|+++..++   .|.+||+++++.+..+..+ ..+..++|+  ++ ++++...++. |
T Consensus        81 ------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           81 ------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             ------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             ------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceE
Confidence                  122233335665  56777555443   8999999999988887754 456899998  55 4555566688 9


Q ss_pred             EEEEeCCCceeeEeec--ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce---eEEEecCCcEEEEEECCC
Q 016134          298 KVWFATGRGNLEAAYT--HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME---RGRIFSKHEVRVIEIGPD  372 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~v~~l~~sp~  372 (394)
                      .+|++.....+.....  .......  ..+.|+|+|+.+++++..++.|++||+.+++.   +..+.....+..++|+|+
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spd  231 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRP--FNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRD  231 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSE--EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTT
T ss_pred             EEEEECCCCcEeecCCccccCCCCc--cceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCC
Confidence            9999986544322211  1111222  33457999985666677789999999999887   777777777899999999


Q ss_pred             C-EEEEE-eCCCeEEEEeCCCC
Q 016134          373 K-LFFTG-DGAGMLGVWKLLAK  392 (394)
Q Consensus       373 ~-~l~tg-s~Dg~I~vWd~~~~  392 (394)
                      + +|+.+ ..++.|.+||+.+.
T Consensus       232 g~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          232 GSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SSEEEEECSSEEEEEEEETTTT
T ss_pred             CCEEEEEEcCCCEEEEEECCCC
Confidence            9 55544 46788999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.77  E-value=6.4e-17  Score=166.99  Aligned_cols=259  Identities=11%  Similarity=-0.027  Sum_probs=183.0

Q ss_pred             ceeeeccccccccccCCCee-cC-CCCCeEEEEEcCCCceEEEEecccCC------------------------CeEEEE
Q 016134          128 TSKKTTLKNVCCHWLLGNCV-RG-DECRFLHSWFCGEGLTMLAKLEGHEK------------------------AVSGIA  181 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~-~g-~~~~~i~iWd~~~~~~~~~~l~~h~~------------------------~V~~l~  181 (394)
                      .+..++ |+|++.+++..+. ++ .....|++||+.++ +....+..|..                        .|.+++
T Consensus        38 ~~~~~~-~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           38 TLMKPK-VAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCEEEE-ECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCce-EecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567777 9999999987765 43 12238999999887 55555555443                        388999


Q ss_pred             ecCCCCEEEEEeCCCc--eeecCCC---cEEEecCCCCcEEEEEEcCC--EEEEEecC-----------------CCCCC
Q 016134          182 LPLRSDKLFSGSRDGT--AWNIESS---AEFSLDGPVGEVYSMVVANE--MLFAGAQD-----------------GHTRP  237 (394)
Q Consensus       182 ~s~~~~~l~sgs~Dg~--vWd~~~~---~~~~~~~~~~~v~~l~~~~~--~l~~~~~~-----------------~h~~~  237 (394)
                      |+|||++|++++. +.  +||+.++   +...+..+...+..++|+|+  .++.+..+                 .+...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence            9999999999987 55  6999988   66677777888999999998  56555433                 12221


Q ss_pred             ----------------EEEEEec--CCeEEEEeCCC---------------------------------eEEEEeCCC-C
Q 016134          238 ----------------VTCLAVG--RSRLCSGSMDN---------------------------------TIRVWELDT-L  265 (394)
Q Consensus       238 ----------------V~~l~~~--~~~l~sgs~Dg---------------------------------~V~iwd~~~-~  265 (394)
                                      +..+.|+  +++|++++.|+                                 .|.+||+.+ +
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            3668887  67888888766                                 899999988 7


Q ss_pred             ceeEEEc--CCCCCcEEEEEc-CCEEEEEeC-----CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134          266 EPVMTLN--DHTDAPMSLLCW-DQFLLSCSL-----DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       266 ~~~~~~~--~h~~~v~~l~~~-~~~l~s~s~-----Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                      +......  .|...+..+.|. +++|++.+.     +..|++||+.+++....+..+............|+|+|+ ++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~  353 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWS  353 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEE
T ss_pred             ceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEE
Confidence            7655433  366677777773 677776653     568999999988766555443321000001234699999 8999


Q ss_pred             EeCCCeEEEEECC-CCceeEEEec-CCcEEEE-EECCCC-EE-EEEeCCC--eEEEEeCCC
Q 016134          338 ACNDNTVHLYELP-SFMERGRIFS-KHEVRVI-EIGPDK-LF-FTGDGAG--MLGVWKLLA  391 (394)
Q Consensus       338 gs~dg~I~iwd~~-~~~~~~~~~~-~~~v~~l-~~sp~~-~l-~tgs~Dg--~I~vWd~~~  391 (394)
                      ++.|+.++||.+. ++. ...+.. ...|..+ .|+|++ .| ++++.++  .++||++..
T Consensus       354 ~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          354 SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            9999988888775 333 444433 4567777 599999 44 5566666  899999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=1e-16  Score=145.25  Aligned_cols=215  Identities=7%  Similarity=-0.060  Sum_probs=145.5

Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC-CcEEEecCCCCcEEEEEEcCCE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES-SAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~-~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      ++.++.|++||+.++ +.. .+..|...|.+++|+|++++|++++ ++.  +||+++ ++...+...             
T Consensus        18 ~~~~~~i~~~d~~~~-~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-------------   81 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR-KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG-------------   81 (297)
T ss_dssp             CCCCEEEEEEETTTT-EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT-------------
T ss_pred             CCcceeEEEEeCCCC-cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc-------------
Confidence            456779999999876 433 5667899999999999999999987 455  699988 766543211             


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEEEEe--CCCeEEE--EeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCc
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLCSGS--MDNTIRV--WELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHT  296 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~sgs--~Dg~V~i--wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~  296 (394)
                             .+...+.+++|+  +++|++++  .++.++|  ||+.+++ ...+..+ ..+..+.|+  +++|+ ++..|+.
T Consensus        82 -------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~  152 (297)
T 2ojh_A           82 -------FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQV  152 (297)
T ss_dssp             -------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTE
T ss_pred             -------cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCc
Confidence                   123455666775  56787777  3344444  5555544 4445444 348888888  66666 7888999


Q ss_pred             EEEEEeCCC-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC-CCceeEEEec-CCcEEEEEECCCC
Q 016134          297 IKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP-SFMERGRIFS-KHEVRVIEIGPDK  373 (394)
Q Consensus       297 i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~-~~~v~~l~~sp~~  373 (394)
                      ++||++... .....+..+..  ...  .+.|+|+++.+++++..++.++||++. .......+.. ...+..++|+|++
T Consensus       153 ~~l~~~~~~~~~~~~~~~~~~--~~~--~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  228 (297)
T 2ojh_A          153 FDIYSMDIDSGVETRLTHGEG--RND--GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG  228 (297)
T ss_dssp             EEEEEEETTTCCEEECCCSSS--CEE--EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred             eEEEEEECCCCcceEcccCCC--ccc--cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence            999997532 23333333322  222  345799999444445568999999886 3444444433 4568999999999


Q ss_pred             -EEEEEeCC-----------CeEEEEeCCCC
Q 016134          374 -LFFTGDGA-----------GMLGVWKLLAK  392 (394)
Q Consensus       374 -~l~tgs~D-----------g~I~vWd~~~~  392 (394)
                       +|++++.+           +.|.+||+.+.
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence             77777765           56999998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.76  E-value=4e-16  Score=146.06  Aligned_cols=277  Identities=10%  Similarity=0.016  Sum_probs=169.2

Q ss_pred             CCCCcccccccCC--CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-eEE
Q 016134           91 SEDRIPHVRNREN--PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-TML  167 (394)
Q Consensus        91 s~d~~~~~w~~~~--~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~  167 (394)
                      +.++.+.+|.++.  +.+....           ...+......++ ++|++. +...... +.++.|++|++.++. +.+
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~-----------~~~~~~~p~~~a-~spdg~-l~~~~~~-~~~~~v~~~~~~~g~~~~~   78 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDG-----------LLAATQNPTYLA-LSAKDC-LYSVDKE-DDEGGIAAWQIDGQTAHKL   78 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEE-----------EEEECSCCCCEE-ECTTCE-EEEEEEE-TTEEEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEEcCCCCeEEEee-----------eeeccCCcceEE-EccCCe-EEEEEec-CCCceEEEEEecCCcEEEe
Confidence            4467788887764  3321100           011123445566 899888 5433332 234589999996652 355


Q ss_pred             EEecccCCCeEEEEecCCCCEEEEEe-CCCc--eeecCC-CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          168 AKLEGHEKAVSGIALPLRSDKLFSGS-RDGT--AWNIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--vWd~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      ..+..+...+..++|+|++++|++++ .++.  +|++.. +....+.       .+......   -....+...+.+++|
T Consensus        79 ~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~-------~~~~~~~~---p~~~~~~~~~~~~~~  148 (347)
T 3hfq_A           79 NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTD-------TVQHSGHG---PRPEQDGSHIHYTDL  148 (347)
T ss_dssp             EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEE-------EEECCCCC---SSTTCSSCCEEEEEE
T ss_pred             eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecc-------eeecCCCC---CCccccCCCceEEEE
Confidence            66667888999999999999999888 5565  699863 3322110       00000000   000012345778888


Q ss_pred             c--CCeEEEEeCCCeEEEEeCC-CCcee--EEEcCC-CCCcEEEEEc--CCEEEE-EeCCCcEEEEEeCC--Ccee--eE
Q 016134          244 G--RSRLCSGSMDNTIRVWELD-TLEPV--MTLNDH-TDAPMSLLCW--DQFLLS-CSLDHTIKVWFATG--RGNL--EA  310 (394)
Q Consensus       244 ~--~~~l~sgs~Dg~V~iwd~~-~~~~~--~~~~~h-~~~v~~l~~~--~~~l~s-~s~Dg~i~vwd~~~--~~~~--~~  310 (394)
                      +  ++++++...++.|++||+. +++..  ..+..+ ...+..++|+  +++|++ ...++.|.+|++..  ++..  ..
T Consensus       149 spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  228 (347)
T 3hfq_A          149 TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI  228 (347)
T ss_dssp             CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence            6  5666666678999999998 45432  222322 2367788888  675555 55688999999874  3221  11


Q ss_pred             eecccCC--cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC---ceeEEEec-CCcEEEEEECCCC-EEEEEeC-CC
Q 016134          311 AYTHKED--NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF---MERGRIFS-KHEVRVIEIGPDK-LFFTGDG-AG  382 (394)
Q Consensus       311 ~~~~~~~--~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~-Dg  382 (394)
                      +......  .......+.|+|+|+.++++...++.|.+|++...   ..+..+.. ...+..++|+||+ +|++++. ++
T Consensus       229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence            2111111  01223344579999955577777999999999732   33444443 4468899999999 6777665 58


Q ss_pred             eEEEEeCCC
Q 016134          383 MLGVWKLLA  391 (394)
Q Consensus       383 ~I~vWd~~~  391 (394)
                      .|.+|+++.
T Consensus       309 ~v~v~~~d~  317 (347)
T 3hfq_A          309 NATLYARDL  317 (347)
T ss_dssp             EEEEEEECT
T ss_pred             cEEEEEEeC
Confidence            999996653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=3.6e-17  Score=164.46  Aligned_cols=258  Identities=7%  Similarity=-0.106  Sum_probs=171.9

Q ss_pred             cccccccCCC-CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec-CCCCCeEEEEEc
Q 016134           83 NNLWVSSGSE-DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR-GDECRFLHSWFC  160 (394)
Q Consensus        83 ~~~~~~s~s~-d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~-g~~~~~i~iWd~  160 (394)
                      |+.+|+++|. |++++||+++++....            ...++...+..+. |+|+ ..+++...+ ++....|.+++.
T Consensus        32 DG~~la~~s~~~g~~~lw~~~~g~~~~------------lt~~~~~~~~~~~-~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           32 DGDKLLVVGFSEGSVNAYLYDGGETVK------------LNREPINSVLDPH-YGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTEEEE------------CCSSCCSEECEEC-TTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             CCCeEEEEEccCCceeEEEEcCCCcEe------------eeccccccccccc-CCCC-eEEEEeccCCCCcceEEEEEec
Confidence            8889999888 9999999997665432            1122224677777 9998 665544432 222223444554


Q ss_pred             --CCCceEEEEecccCCCeEEEEecCCCC--EEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCC
Q 016134          161 --GEGLTMLAKLEGHEKAVSGIALPLRSD--KLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHT  235 (394)
Q Consensus       161 --~~~~~~~~~l~~h~~~V~~l~~s~~~~--~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~  235 (394)
                        ...  .. .+..+. .+...+|+|+++  .+++++.++. |||+++++...+..+.                      
T Consensus        98 ~~~g~--~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~----------------------  151 (582)
T 3o4h_A           98 SRPGE--EQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP----------------------  151 (582)
T ss_dssp             TSTTC--CE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES----------------------
T ss_pred             cCCCc--cc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC----------------------
Confidence              333  22 333222 344667777775  4555556655 7999888765432211                      


Q ss_pred             CCEEEEEec--CCeEEEEeCC----CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC--cEEEEEeCCC
Q 016134          236 RPVTCLAVG--RSRLCSGSMD----NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH--TIKVWFATGR  305 (394)
Q Consensus       236 ~~V~~l~~~--~~~l~sgs~D----g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg--~i~vwd~~~~  305 (394)
                      .  .+++|+  +++|++++.|    ..|++||+.+++.. .+..|...+..++|+  |+.|+++..++  .|++||+.++
T Consensus       152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            1  444554  7888877777    78999999987754 677888889999998  78999888888  8999999887


Q ss_pred             ceeeEeecccCCcceEE----EEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeC
Q 016134          306 GNLEAAYTHKEDNGVLA----LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~----~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      +.. .+..+........    ....|+|||. ++++++.|++++||++  ++...  .....|.+++|+ ++ ++++++.
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          229 SVE-DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             cEE-EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcC
Confidence            665 4433332221111    1122799995 9999999999999999  54443  234678999999 88 7777777


Q ss_pred             CCe---EEEEeCC
Q 016134          381 AGM---LGVWKLL  390 (394)
Q Consensus       381 Dg~---I~vWd~~  390 (394)
                      +..   |.+|++.
T Consensus       302 ~~~p~~l~~~d~~  314 (582)
T 3o4h_A          302 LSTPPRIVSLPSG  314 (582)
T ss_dssp             TTEEEEEEEETTC
T ss_pred             CCCCCeEEEEcCC
Confidence            644   5666553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.74  E-value=6.3e-17  Score=166.19  Aligned_cols=309  Identities=11%  Similarity=-0.014  Sum_probs=176.8

Q ss_pred             CCCcccC-CCCCcccccccccccccCCCCCcccccccCCCCC--CCCCCCCCC---c-cccccCCCCccceeeecccccc
Q 016134           66 SNPKLAK-KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGY--TGPKNSSSA---S-STVSDESGDKSTSKKTTLKNVC  138 (394)
Q Consensus        66 ~~~~~~~-~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~--~~~~~s~~~---~-~~~~~~~g~~~~v~~~~~~~~~  138 (394)
                      .+.+.+. .....|.    +..+++.++|+ | +||++++..  .........   . ......+.+...+..++ ++|+
T Consensus        20 ~~~~~~~~~~~~~w~----g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~-~spd   92 (706)
T 2z3z_A           20 FYNFYPEYVVGLQWM----GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL-DAGR   92 (706)
T ss_dssp             --------CTTCEEE----TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE-ETTT
T ss_pred             ccccccccCCCCcCc----CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE-ECCC
Confidence            4444432 3445665    33456666677 7 999998875  211000000   0 00000111124578888 9999


Q ss_pred             ccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCC-----CcEEEecC
Q 016134          139 CHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES-----SAEFSLDG  211 (394)
Q Consensus       139 ~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~-----~~~~~~~~  211 (394)
                       .+++.. .+    +.|++||+.++ +. ..+..+...+.+++|+|||++|+++ .|+.  +||+.+     ++...+..
T Consensus        93 -~~~~~~-~~----~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~  163 (706)
T 2z3z_A           93 -GLVVLF-TQ----GGLVGFDMLAR-KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI  163 (706)
T ss_dssp             -TEEEEE-ET----TEEEEEETTTT-EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred             -CeEEEE-EC----CEEEEEECCCC-ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence             444332 23    59999999876 43 3455677889999999999999996 5566  699988     77664432


Q ss_pred             C-CCc--------------EEEEEEcCC--EEEEEecCCCCCCEEEEE-ecC--CeEEE--------EeCCCeEEEEeCC
Q 016134          212 P-VGE--------------VYSMVVANE--MLFAGAQDGHTRPVTCLA-VGR--SRLCS--------GSMDNTIRVWELD  263 (394)
Q Consensus       212 ~-~~~--------------v~~l~~~~~--~l~~~~~~~h~~~V~~l~-~~~--~~l~s--------gs~Dg~V~iwd~~  263 (394)
                      . ...              +..+.|+|+  .|+.+..+.....+..+. ...  ..+..        ...+..|++||+.
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            2 222              356667766  455444332211111111 000  00000        1145689999999


Q ss_pred             CCceeEEEc--CCCCCcEEEEEc--CCEEEEEeCCC-----cEEEEEeCCCceeeEeecccCCcce-EEEEeeECC--CC
Q 016134          264 TLEPVMTLN--DHTDAPMSLLCW--DQFLLSCSLDH-----TIKVWFATGRGNLEAAYTHKEDNGV-LALGGLNDP--DG  331 (394)
Q Consensus       264 ~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--~g  331 (394)
                      +++......  .|...+.++.|+  ++.|++++.++     .|++||+.+++....+......... ......|+|  +|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          244 TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence            887654432  466778999998  78888887775     8999999887444444322221111 011234699  99


Q ss_pred             CcEEEEEeCCCeEEEEECC-CCceeEEEec-CCcEEE-EEECCCC-EE-EEEeCCC----eEEEEeCCC
Q 016134          332 KPVLICACNDNTVHLYELP-SFMERGRIFS-KHEVRV-IEIGPDK-LF-FTGDGAG----MLGVWKLLA  391 (394)
Q Consensus       332 ~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~-~~~v~~-l~~sp~~-~l-~tgs~Dg----~I~vWd~~~  391 (394)
                      + +|+++..|+.++||++. ++..+..+.. ...+.. ++|+|++ .| +++..++    .|..||+.+
T Consensus       324 ~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          324 Q-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             E-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             E-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            8 88999999999999886 5555555544 445766 7999999 54 4555555    566666544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.74  E-value=4.1e-16  Score=144.83  Aligned_cols=216  Identities=18%  Similarity=0.155  Sum_probs=142.8

Q ss_pred             CCCeEEEEEcCC-C-ceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc--eeecC--CCcEEEecCCCCcEEEEEEcC
Q 016134          151 ECRFLHSWFCGE-G-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT--AWNIE--SSAEFSLDGPVGEVYSMVVAN  223 (394)
Q Consensus       151 ~~~~i~iWd~~~-~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~--vWd~~--~~~~~~~~~~~~~v~~l~~~~  223 (394)
                      .++.|++|++.. + .+.+.. ..|...+.+++|+|++++|++++.+ +.  +|+++  +++...+..            
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~------------   79 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------   79 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------------
T ss_pred             CCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc------------
Confidence            355999999953 2 233333 4578889999999999999998887 66  69987  554321100            


Q ss_pred             CEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEEeC---CCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CC
Q 016134          224 EMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVWEL---DTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LD  294 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~---~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~D  294 (394)
                             ...+ ..+..++|+  +++|++++ .++.|.+||+   .+.+.+..+..+ ..+.+++|+  +++|++++ .+
T Consensus        80 -------~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~  150 (343)
T 1ri6_A           80 -------SALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQ  150 (343)
T ss_dssp             -------EECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGG
T ss_pred             -------cccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCC
Confidence                   0011 255667776  56565555 4899999999   444555555544 457888888  67777777 89


Q ss_pred             CcEEEEEeCCCceeeEee----cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC--Cce--eEEEec------
Q 016134          295 HTIKVWFATGRGNLEAAY----THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS--FME--RGRIFS------  360 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~--~~~--~~~~~~------  360 (394)
                      +.|++||+.....+....    .........  .+.|+|+++.+++++..++.|.+|++..  ++.  ...+..      
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPR--HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  228 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEE--EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcc--eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence            999999998733232211    111111222  3457999995556666899999999954  322  222221      


Q ss_pred             -CCcEEEEEECCCC-EEE-EEeCCCeEEEEeCC
Q 016134          361 -KHEVRVIEIGPDK-LFF-TGDGAGMLGVWKLL  390 (394)
Q Consensus       361 -~~~v~~l~~sp~~-~l~-tgs~Dg~I~vWd~~  390 (394)
                       ...+..++|+|++ +|+ +...++.|.+|++.
T Consensus       229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          229 DTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence             2357789999999 555 56689999999987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.73  E-value=1.6e-16  Score=163.46  Aligned_cols=232  Identities=11%  Similarity=0.001  Sum_probs=161.3

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCC---CeEEEEecCCCCEEEEEeCCCc--------
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEK---AVSGIALPLRSDKLFSGSRDGT--------  197 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~---~V~~l~~s~~~~~l~sgs~Dg~--------  197 (394)
                      ...++ |+|++.++++ .    .++.|++||+.++ +....+.+|..   .|.+++|+|||++|++++.++.        
T Consensus        19 ~~~~~-~spdg~~~~~-~----~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           19 DPEAK-WISDTEFIYR-E----QKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCC-BSSSSCBCCC-C----SSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccE-EcCCCcEEEE-e----CCCCEEEEECCCC-cEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            34555 9999998765 2    3459999999887 55667777765   4999999999999999987643        


Q ss_pred             ---eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134          198 ---AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN  272 (394)
Q Consensus       198 ---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  272 (394)
                         +||+++++...+....                   +|...+..++|+  ++.|+.++. +.|++||+.+++..+...
T Consensus        92 ~i~~~d~~~~~~~~l~~~~-------------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           92 YYVLSKIPHGDPQSLDPPE-------------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEEEEESSSCCCEECCCTT-------------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             eEEEEECCCCceEeccCCc-------------------cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec
Confidence               6898888764333221                   344456667776  677888775 799999999988777666


Q ss_pred             CCCCCc------------------EEEEEc--CCEEEEEeCCC----------------------------------cEE
Q 016134          273 DHTDAP------------------MSLLCW--DQFLLSCSLDH----------------------------------TIK  298 (394)
Q Consensus       273 ~h~~~v------------------~~l~~~--~~~l~s~s~Dg----------------------------------~i~  298 (394)
                      .+...+                  .++.|+  ++.|++++.|+                                  .|+
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~  231 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH  231 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence            544444                  789998  78888887553                                  799


Q ss_pred             EEEeCCCceeeEeecccC--CcceEEEEeeECCCCCcEEEEEeC----CCeEEEEECCCCceeEEEec--CCcE----EE
Q 016134          299 VWFATGRGNLEAAYTHKE--DNGVLALGGLNDPDGKPVLICACN----DNTVHLYELPSFMERGRIFS--KHEV----RV  366 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~--~~~v----~~  366 (394)
                      +||+.+++....+..+..  ........+.|+|||+ +|++...    +..|++||+.+++....+..  ...+    ..
T Consensus       232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  310 (723)
T 1xfd_A          232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE  310 (723)
T ss_dssp             EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred             EEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence            999987765444433210  0122233456899998 6665542    36799999999876655432  2333    37


Q ss_pred             EEECCCC-EEEE--EeCCC------eEEEEe
Q 016134          367 IEIGPDK-LFFT--GDGAG------MLGVWK  388 (394)
Q Consensus       367 l~~sp~~-~l~t--gs~Dg------~I~vWd  388 (394)
                      ++|+||| .|+.  +..++      .|.+||
T Consensus       311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             ceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            8999999 4443  55777      566666

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=3.9e-16  Score=167.47  Aligned_cols=297  Identities=8%  Similarity=-0.033  Sum_probs=204.9

Q ss_pred             cccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeecccc-ccccccCCCeecCCCCCeE
Q 016134           77 SYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKN-VCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        77 ~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~i  155 (394)
                      +|++  ++.+++++ .|..+.+|++++........ ...... .....+...+..+. |+ |++.+++...     ++.|
T Consensus       251 ~~Sp--DG~~la~~-~~~~i~~~d~~~~~l~~l~~-~~~~~~-~~~~~~~~~v~~~~-~S~pdG~~la~~~-----~~~i  319 (1045)
T 1k32_A          251 HLNT--DGRRILFS-KGGSIYIFNPDTEKIEKIEI-GDLESP-EDRIISIPSKFAED-FSPLDGDLIAFVS-----RGQA  319 (1045)
T ss_dssp             EEEE--SSSCEEEE-ETTEEEEECTTTCCEEECCC-CCCCBC-CSEEEECGGGGEEE-EEECGGGCEEEEE-----TTEE
T ss_pred             eEcC--CCCEEEEE-eCCEEEEecCCceEeeeecc-Cccccc-ccccccccccceee-ecCCCCCEEEEEE-----cCEE
Confidence            5555  77777775 58899999985433321000 000000 00001233577888 99 9999998765     3489


Q ss_pred             EEEEcCCCceEEEEecccCC-CeEEEEecCCCCEEEEEeCCCcee---ecCCCcEEEecCCCCcEEEEEEcCC--EEEEE
Q 016134          156 HSWFCGEGLTMLAKLEGHEK-AVSGIALPLRSDKLFSGSRDGTAW---NIESSAEFSLDGPVGEVYSMVVANE--MLFAG  229 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~-~V~~l~~s~~~~~l~sgs~Dg~vW---d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~  229 (394)
                      .+|+..++ + ...+..|.. .+..++|+ +++.|+.++.+..+|   ++.+++...+..+...+..++|+|+  .++.+
T Consensus       320 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~  396 (1045)
T 1k32_A          320 FIQDVSGT-Y-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA  396 (1045)
T ss_dssp             EEECTTSS-B-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE
T ss_pred             EEEcCCCC-c-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEE
Confidence            99999776 3 334677888 89999999 999999999877666   7777777766677788999999998  66666


Q ss_pred             ecC------------------CCCCCEEEEEec--CCeEEEEeCCC----------eEEEEeCCCCceeEEEcCCCCCcE
Q 016134          230 AQD------------------GHTRPVTCLAVG--RSRLCSGSMDN----------TIRVWELDTLEPVMTLNDHTDAPM  279 (394)
Q Consensus       230 ~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg----------~V~iwd~~~~~~~~~~~~h~~~v~  279 (394)
                      ..+                  +|...+.+++|+  +++|++++.++          .|++||+.+++ +..+..|...+.
T Consensus       397 ~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~  475 (1045)
T 1k32_A          397 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDY  475 (1045)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEE
T ss_pred             CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccC
Confidence            544                  566777888897  67788877654          99999999877 677788888889


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEeCCCce-------eeE--------------------------eecccC------Cc
Q 016134          280 SLLCW--DQFLLSCSLDHTIKVWFATGRGN-------LEA--------------------------AYTHKE------DN  318 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-------~~~--------------------------~~~~~~------~~  318 (394)
                      .+.|+  +++|++.+.++..++|+......       +..                          +.....      ..
T Consensus       476 ~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~  555 (1045)
T 1k32_A          476 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD  555 (1045)
T ss_dssp             EEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC
T ss_pred             CceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC
Confidence            99998  78999999888877776543211       000                          000000      00


Q ss_pred             ceEEEEeeECCCCCcEEEE-------------EeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeE
Q 016134          319 GVLALGGLNDPDGKPVLIC-------------ACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~s-------------gs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      ......+.++|++. ++++             ......|.+||+.+++.....   ..+..++|+||| +|++++.+ .|
T Consensus       556 ~~~~~~~~~s~dg~-~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~~~~-~i  630 (1045)
T 1k32_A          556 PGDYRMIIPLESSI-LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDD-GK  630 (1045)
T ss_dssp             CBCEEEEEECSSEE-EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETT-SC
T ss_pred             CCChhheEEcCCCe-EEEEecccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEEcCC-cE
Confidence            01112334689997 5554             123557899999887654332   568899999999 88888777 79


Q ss_pred             EEEeCCCCC
Q 016134          385 GVWKLLAKP  393 (394)
Q Consensus       385 ~vWd~~~~~  393 (394)
                      ++||+.++.
T Consensus       631 ~~~d~~~~~  639 (1045)
T 1k32_A          631 IYTFPLEKP  639 (1045)
T ss_dssp             EEEEESSCT
T ss_pred             EEEeCccCc
Confidence            999997754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=7.3e-16  Score=143.61  Aligned_cols=230  Identities=11%  Similarity=0.031  Sum_probs=153.6

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEE-EeCCCc--eeecCCCcEEEe-
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFS-GSRDGT--AWNIESSAEFSL-  209 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~s-gs~Dg~--vWd~~~~~~~~~-  209 (394)
                      +++.+.++++...++    .|++||..++ +.+..+..+. ..+..++|+|++++++. ...++.  +||+++++.... 
T Consensus         7 ~~~~~~~~v~~~~~~----~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPN----NLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCTTCEEEEEEETTT----EEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCEEEEEeCCCC----eEEEEECCCC-cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            455566666555444    9999999887 6666666543 26789999999987654 445666  599988876532 


Q ss_pred             cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCC------------CeEEEEeCCCCc---eeEEEc
Q 016134          210 DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMD------------NTIRVWELDTLE---PVMTLN  272 (394)
Q Consensus       210 ~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~D------------g~V~iwd~~~~~---~~~~~~  272 (394)
                      ......        .        .+...+..++|+  +++|++++.+            +.|.+||+.+++   .+..+.
T Consensus        82 ~~~~~~--------~--------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           82 NLSSVP--------G--------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             ESCCST--------T--------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             Eccccc--------c--------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            111100        0        001123445564  5567766654            899999998743   344444


Q ss_pred             CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC------------------c----c---------
Q 016134          273 DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED------------------N----G---------  319 (394)
Q Consensus       273 ~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------------------~----~---------  319 (394)
                      . ...+.+++|+  ++ +++++  +.|.+||+.+++....+......                  .    .         
T Consensus       146 ~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  221 (349)
T 1jmx_B          146 M-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  221 (349)
T ss_dssp             C-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             C-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence            3 3467888887  56 55554  34999999887766554322100                  0    0         


Q ss_pred             ---------------------------------eEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEE
Q 016134          320 ---------------------------------VLALGGLNDP-DGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVR  365 (394)
Q Consensus       320 ---------------------------------~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~  365 (394)
                                                       .......++| +++ +|+++  ++.|.+||+.+++.+..+.....+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~  298 (349)
T 1jmx_B          222 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAANLDHTYY  298 (349)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEECSSCCC
T ss_pred             CcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEcCCCCcc
Confidence                                             0112334678 998 66666  8899999999998888877767788


Q ss_pred             EEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          366 VIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       366 ~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +++|+|++ +|++++.++.|.+||+.+.
T Consensus       299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          299 CVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             ceEECCCCCEEEEecCCCeEEEEecccc
Confidence            99999998 7777888999999998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.72  E-value=2e-16  Score=153.44  Aligned_cols=207  Identities=14%  Similarity=0.008  Sum_probs=137.3

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCC----------ceEEE----EecccCCCeEEEEecCCCCEEE----
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG----------LTMLA----KLEGHEKAVSGIALPLRSDKLF----  190 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~----------~~~~~----~l~~h~~~V~~l~~s~~~~~l~----  190 (394)
                      +..++ +++...+++.++.++     |+||+...-          .....    ....|...|++++|+|++++|+    
T Consensus        39 ~n~la-vs~~~~~l~~~~~dg-----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           39 SSLLA-VSNKYGLVFAGGASG-----LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CBCEE-EETTTTEEEEEETTE-----EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             ccEEE-EecCCCEEEEECCCE-----EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence            44555 777777776554332     788764210          01110    1123567899999999999999    


Q ss_pred             EEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCC
Q 016134          191 SGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTL  265 (394)
Q Consensus       191 sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~  265 (394)
                      +++.|+.  |||+++..... ......+..+         ....+|...|.+++|+   +++|++++.|++|++||++++
T Consensus       113 sgs~d~~v~iwd~~~~~~~~-~~~~~~~~~~---------~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEA-KQQKRPFAYH---------KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTT-CSSCCCSEEE---------ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             ccCCCceEEEEEccccccCC-cCCcceeeee---------eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            7888888  69987541000 0000000000         1223688899999997   468999999999999999998


Q ss_pred             ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC---CcceEEEEeeECCCCCcEEEEEeC
Q 016134          266 EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE---DNGVLALGGLNDPDGKPVLICACN  340 (394)
Q Consensus       266 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~l~sgs~  340 (394)
                      +.+....+|...|.+++|+  +++|++++.|++|++||++ ++....+..+..   ........+.|++++..+++....
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            8777777889999999999  8899999999999999998 444444443322   112234445577877633334444


Q ss_pred             CC------eEEEEECCCC
Q 016134          341 DN------TVHLYELPSF  352 (394)
Q Consensus       341 dg------~I~iwd~~~~  352 (394)
                      ||      .+++|+++..
T Consensus       262 dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TCCSSSCCEEEEEECCCT
T ss_pred             CCccCCCCceEEEEeccC
Confidence            53      3899999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=4.3e-16  Score=167.14  Aligned_cols=255  Identities=7%  Similarity=-0.018  Sum_probs=180.1

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT  165 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~  165 (394)
                      .+.+++.|.+++||.++...-.. .          ...++. .+.... ++|++.+++...     ++.|++|+.... +
T Consensus       216 l~~~~~~dg~~~l~~~~~~g~~~-~----------~l~~~~-~~~~~~-~SpDG~~la~~~-----~~~i~~~d~~~~-~  276 (1045)
T 1k32_A          216 IYFITDIDGFGQIYSTDLDGKDL-R----------KHTSFT-DYYPRH-LNTDGRRILFSK-----GGSIYIFNPDTE-K  276 (1045)
T ss_dssp             EEEEECTTSSCEEEEEETTSCSC-E----------ECCCCC-SSCEEE-EEESSSCEEEEE-----TTEEEEECTTTC-C
T ss_pred             EEEEEeccCceEEEEEeCCCCcc-e----------EecCCC-Ccceee-EcCCCCEEEEEe-----CCEEEEecCCce-E
Confidence            33455668899999876422100 0          111222 234455 999999887652     458999998443 3


Q ss_pred             EEEEecc-----------cCCCeEEEEec-CCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          166 MLAKLEG-----------HEKAVSGIALP-LRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       166 ~~~~l~~-----------h~~~V~~l~~s-~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                       +..+.+           |...|.+++|+ |||++|++++ ++.  +|++.++....+..+                   
T Consensus       277 -l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~-------------------  335 (1045)
T 1k32_A          277 -IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEP-------------------  335 (1045)
T ss_dssp             -EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCC-------------------
T ss_pred             -eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCC-------------------
Confidence             335555           44579999999 9999999988 555  577777765554333                   


Q ss_pred             CCCCC-CEEEEEec-CCeEEEEeCCCeEE-EEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCc
Q 016134          232 DGHTR-PVTCLAVG-RSRLCSGSMDNTIR-VWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       232 ~~h~~-~V~~l~~~-~~~l~sgs~Dg~V~-iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                         .. .+..++|+ ++.|++++.+..+. +||+.+++.. .+..|...+..++|+  +++|++++.++.|++||+.+++
T Consensus       336 ---~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          336 ---LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             ---SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ---CcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence               33 45555665 44677777788888 9999877654 445788889999998  7899999999999999999887


Q ss_pred             eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC----------CeEEEEECCCCceeEEEe-cCCcEEEEEECCCC-E
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND----------NTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK-L  374 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d----------g~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~  374 (394)
                      .......+......+    .|+|||+ +|++++.+          +.|++||+.+++ ...+. +...+..++|+||| +
T Consensus       412 ~~~~~~~~~~~v~~~----~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          412 PTVIERSREAMITDF----TISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN  485 (1045)
T ss_dssp             EEEEEECSSSCCCCE----EECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred             eEEeccCCCCCccce----EECCCCC-eEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence            666554554443333    3699999 66666554          489999999876 33333 35668899999999 8


Q ss_pred             EEEEeCCCeEEEEeCC
Q 016134          375 FFTGDGAGMLGVWKLL  390 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~~  390 (394)
                      |++++.++...+|+..
T Consensus       486 l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          486 LYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EEEEESCCCCCEECSS
T ss_pred             EEEEecccCCcCcchh
Confidence            8899988888888753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=1.3e-13  Score=129.79  Aligned_cols=250  Identities=9%  Similarity=0.065  Sum_probs=157.7

Q ss_pred             ccccCCCeecCCCCCeEEEEEc--CCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCC----Cc--eeecCC--CcEE
Q 016134          139 CHWLLGNCVRGDECRFLHSWFC--GEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRD----GT--AWNIES--SAEF  207 (394)
Q Consensus       139 ~~~~~~~~~~g~~~~~i~iWd~--~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D----g~--vWd~~~--~~~~  207 (394)
                      ..++..+.+.++.++.|++|++  .++. +.+..+  +...+..++|+|++++|++++.+    +.  +|++..  ++..
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            3444455666666778899876  3342 333333  78888999999999999999986    44  588765  4432


Q ss_pred             ---EecCCCCcEEEEEEcCCEEEEEecC------------C---------------------CCCCEEEEEec--CCeEE
Q 016134          208 ---SLDGPVGEVYSMVVANEMLFAGAQD------------G---------------------HTRPVTCLAVG--RSRLC  249 (394)
Q Consensus       208 ---~~~~~~~~v~~l~~~~~~l~~~~~~------------~---------------------h~~~V~~l~~~--~~~l~  249 (394)
                         ....+......+++....++++...            +                     +...+.+++|+  +++|+
T Consensus        91 ~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           91 LLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             EeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence               2233445566777733356555432            0                     01123678887  56555


Q ss_pred             EE-eCCCeEEEEeCCCCc-------ee------EEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCCcee--eE
Q 016134          250 SG-SMDNTIRVWELDTLE-------PV------MTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGRGNL--EA  310 (394)
Q Consensus       250 sg-s~Dg~V~iwd~~~~~-------~~------~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~~~~--~~  310 (394)
                      ++ ..++.|++|++....       ..      .....+...+..++|+  +++|++++ .++.|.+||+.+++..  ..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            54 458999999887533       11      1122344567889998  67777777 6899999999865432  22


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeC-CCeEEEEECC--CCc--eeEEEecCCcEEEEEECCCC-EEEEEe-CCCe
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACN-DNTVHLYELP--SFM--ERGRIFSKHEVRVIEIGPDK-LFFTGD-GAGM  383 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~-dg~I~iwd~~--~~~--~~~~~~~~~~v~~l~~sp~~-~l~tgs-~Dg~  383 (394)
                      +...... ......+.|+|+|+.++++... ++.|.+|++.  +++  .+..+.....+..++|+|++ +|++++ .++.
T Consensus       251 ~~~~~~~-~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          251 VAADTVN-AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             EESCSSC-CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             EecCCCC-CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence            2221111 1111234579999944344444 5899999996  343  33344444568899999999 677766 6789


Q ss_pred             EEEEeCCC
Q 016134          384 LGVWKLLA  391 (394)
Q Consensus       384 I~vWd~~~  391 (394)
                      |.+|+++.
T Consensus       330 v~v~~~d~  337 (361)
T 3scy_A          330 IQIFERDQ  337 (361)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99987653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=1.5e-14  Score=133.85  Aligned_cols=214  Identities=8%  Similarity=-0.031  Sum_probs=144.4

Q ss_pred             CCCeEEEEEcCCCceEEEEecc-cCC-CeEEEEecCCCCEEEE-EeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEG-HEK-AVSGIALPLRSDKLFS-GSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~-h~~-~V~~l~~s~~~~~l~s-gs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      .++.|++||..++ +.+..+.. +.. .+..++|+|++++|+. +..++.  +||+.+++.+........          
T Consensus         9 ~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------   77 (337)
T 1pby_B            9 RPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----------   77 (337)
T ss_dssp             TTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----------
T ss_pred             CCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----------
Confidence            3459999999887 66666653 322 5889999999987654 455566  599988876532111000          


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEEEEe------------CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLCSGS------------MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL  289 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~sgs------------~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~  289 (394)
                            ..|...+.+++|+  +++|+++.            .++.|.+||+.+++.+..+.. ...+..+.|+  +++|+
T Consensus        78 ------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~  150 (337)
T 1pby_B           78 ------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLY  150 (337)
T ss_dssp             ------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEE
T ss_pred             ------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEE
Confidence                  0011133455665  55677765            579999999999888887764 4557778887  66677


Q ss_pred             EEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC-----------------------eEEE
Q 016134          290 SCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----------------------TVHL  346 (394)
Q Consensus       290 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----------------------~I~i  346 (394)
                      ++  ++.|.+||+.+++....+........ .    .++|++..+++++..++                       .|.+
T Consensus       151 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~-~----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  223 (337)
T 1pby_B          151 GL--GRDLHVMDPEAGTLVEDKPIQSWEAE-T----YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             EE--SSSEEEEETTTTEEEEEECSTTTTTT-T----BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             Ee--CCeEEEEECCCCcEeeeeeccccCCC-c----eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence            76  68999999998877665544331111 1    35888874444443333                       4789


Q ss_pred             EECCCCceeEEEe---cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          347 YELPSFMERGRIF---SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       347 wd~~~~~~~~~~~---~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ||+.+++.. .+.   ....+.+++|+|++ +|+++  ++.|.+||+.+.
T Consensus       224 ~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          224 MDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             EETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred             EeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence            999998765 222   24568899999999 77777  799999998753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.66  E-value=2.4e-15  Score=151.03  Aligned_cols=224  Identities=9%  Similarity=0.010  Sum_probs=152.2

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEEEeC---CCc--eeec
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFSGSR---DGT--AWNI  201 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~---Dg~--vWd~  201 (394)
                      .|.++. ++|++.+|+.....   +++++||++.++ +.. .+..|. ..|..++|+|| +.+++++.   +..  ||.+
T Consensus        23 ~~~~~~-~~~DG~~la~~s~~---~g~~~lw~~~~g-~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           23 EKYSLQ-GVVDGDKLLVVGFS---EGSVNAYLYDGG-ETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             CEEEEE-EEETTTEEEEEEEE---TTEEEEEEEETT-EEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             chheee-cCCCCCeEEEEEcc---CCceeEEEEcCC-CcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            577888 99999999876651   348999998655 544 444555 68999999999 78888775   222  5544


Q ss_pred             CC---CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Q 016134          202 ES---SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDA  277 (394)
Q Consensus       202 ~~---~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~  277 (394)
                      ..   +....+...                     +...+.++.++++ .+++.+.++.+.|||+.++++......+ . 
T Consensus        96 ~~~~~g~~~~l~~~---------------------~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~-  152 (582)
T 3o4h_A           96 NTSRPGEEQRLEAV---------------------KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G-  152 (582)
T ss_dssp             ETTSTTCCEECTTS---------------------CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S-
T ss_pred             eccCCCccccccCC---------------------CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C-
Confidence            32   222222111                     1112344555553 3334444445559999988766554433 3 


Q ss_pred             cEEEEEc--CCEEEEEeCC----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEEC
Q 016134          278 PMSLLCW--DQFLLSCSLD----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYEL  349 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~  349 (394)
                       .++.|+  |++|++++.|    ..|++||+.+++.. .+..+...    .....|+|||+ .|+++..++  .|++||+
T Consensus       153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~----~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGS----FSSASISPGMK-VTAGLETAREARLVTVDP  225 (582)
T ss_dssp             -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCE----EEEEEECTTSC-EEEEEECSSCEEEEEECT
T ss_pred             -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCc----cccceECCCCC-EEEEccCCCeeEEEEEcC
Confidence             667776  8999988877    78999999876644 34333221    23456899999 777888888  8999999


Q ss_pred             CCCceeEEEec-CCcEEEEE--------ECCCC-EEEEEeCCCeEEEEeC
Q 016134          350 PSFMERGRIFS-KHEVRVIE--------IGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       350 ~~~~~~~~~~~-~~~v~~l~--------~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      .+++.. .+.. ...+..++        |+||| ++++++.|+.+++|++
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            988776 3332 33455556        99999 9999999999999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=2.1e-14  Score=134.29  Aligned_cols=227  Identities=14%  Similarity=0.131  Sum_probs=140.1

Q ss_pred             CeecCCCCCeEEEEEcC--CCceEEEEecccCCCeEEEEecCCCCEEEEEeC---CCc--eeecCCCcEEEecCCCCcEE
Q 016134          145 NCVRGDECRFLHSWFCG--EGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR---DGT--AWNIESSAEFSLDGPVGEVY  217 (394)
Q Consensus       145 ~~~~g~~~~~i~iWd~~--~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~---Dg~--vWd~~~~~~~~~~~~~~~v~  217 (394)
                      +++.++.++.|++|++.  ++.........+...+..++|+|+++ |++++.   ++.  +|++.+++...+..      
T Consensus         8 g~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~------   80 (347)
T 3hfq_A            8 GTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT------   80 (347)
T ss_dssp             EECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE------
T ss_pred             EeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee------
Confidence            34444445567777663  44222223445667888999999999 666554   344  69987665432110      


Q ss_pred             EEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEEeCCC-C--ceeEEEcCC---------CCCcEEEE
Q 016134          218 SMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVWELDT-L--EPVMTLNDH---------TDAPMSLL  282 (394)
Q Consensus       218 ~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~~-~--~~~~~~~~h---------~~~v~~l~  282 (394)
                                   ...+...+..++|+  +++|++++ .++.|.+||+.. +  +.+..+...         ...+.+++
T Consensus        81 -------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~  147 (347)
T 3hfq_A           81 -------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD  147 (347)
T ss_dssp             -------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred             -------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence                         00233455566776  66777777 789999999963 2  233333221         12477888


Q ss_pred             Ec--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC--Cce--eE
Q 016134          283 CW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS--FME--RG  356 (394)
Q Consensus       283 ~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~--~~~--~~  356 (394)
                      ++  ++++++...++.|++||+.....+................+.|+|+|+.++++...++.|.+|++..  ++.  +.
T Consensus       148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence            88  6766666678899999998333222222111111111123457999995666677889999999874  432  22


Q ss_pred             EEec-C------CcEEEEEECCCC-EE-EEEeCCCeEEEEeCCC
Q 016134          357 RIFS-K------HEVRVIEIGPDK-LF-FTGDGAGMLGVWKLLA  391 (394)
Q Consensus       357 ~~~~-~------~~v~~l~~sp~~-~l-~tgs~Dg~I~vWd~~~  391 (394)
                      .+.. .      ..+..++|+||| +| ++...++.|.+|++..
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            2222 1      458999999999 55 5666799999999863

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=9.1e-16  Score=157.95  Aligned_cols=295  Identities=11%  Similarity=0.007  Sum_probs=175.5

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc---ceeeeccccccccccCCCeecC-
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS---TSKKTTLKNVCCHWLLGNCVRG-  149 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~---~v~~~~~~~~~~~~~~~~~~~g-  149 (394)
                      ...+|++  ++. ++..+.|+++++||++++....            ...++..   .+..++ |+|++.+|+.+.... 
T Consensus        19 ~~~~~s~--dg~-~~~~~~d~~i~~~~~~~g~~~~------------~~~~~~~~~~~~~~~~-~SpDg~~la~~~~~~~   82 (719)
T 1z68_A           19 FFPNWIS--GQE-YLHQSADNNIVLYNIETGQSYT------------ILSNRTMKSVNASNYG-LSPDRQFVYLESDYSK   82 (719)
T ss_dssp             CCCEESS--SSE-EEEECTTSCEEEEESSSCCEEE------------EECHHHHHTTTCSEEE-ECTTSSEEEEEEEEEE
T ss_pred             CccEECC--CCe-EEEEcCCCCEEEEEcCCCcEEE------------EEccccccccceeeEE-ECCCCCeEEEEecCce
Confidence            3567777  764 4444569999999999887532            1112221   377788 999999998776532 


Q ss_pred             ----CCCCeEEEEEcCCCceEE--EEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEec--CCCCcE---
Q 016134          150 ----DECRFLHSWFCGEGLTML--AKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLD--GPVGEV---  216 (394)
Q Consensus       150 ----~~~~~i~iWd~~~~~~~~--~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~--~~~~~v---  216 (394)
                          +.++.|++||+.++ +.+  ..+   ...+..++|+|||+.|+.+. |+.  +|++.+++...+.  ++...+   
T Consensus        83 ~~~~s~~~~i~~~d~~~g-~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           83 LWRYSYTATYYIYDLSNG-EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             CSSSCEEEEEEEEETTTT-EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             eEEeecceEEEEEECCCC-ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence                22569999999887 331  222   35689999999999999987 455  6999888776543  222222   


Q ss_pred             --------------EEEEEcCC--EEEEEecCCCCCCEEEEEecCC----eEE------EE--eCCCeEEEEeCCCCcee
Q 016134          217 --------------YSMVVANE--MLFAGAQDGHTRPVTCLAVGRS----RLC------SG--SMDNTIRVWELDTLEPV  268 (394)
Q Consensus       217 --------------~~l~~~~~--~l~~~~~~~h~~~V~~l~~~~~----~l~------sg--s~Dg~V~iwd~~~~~~~  268 (394)
                                    ..+.|+||  .|+.++.+.....+..+.....    ...      .|  ..+..|++||+.+++.+
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~  237 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV  237 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence                          36777777  5555554432222222211100    000      00  12238999999987653


Q ss_pred             --EE------EcCCCCCcEEEEEc--CCEEEEEeCC----CcEEEEE----eCCCceeeEe----ecccCCcce-EEEEe
Q 016134          269 --MT------LNDHTDAPMSLLCW--DQFLLSCSLD----HTIKVWF----ATGRGNLEAA----YTHKEDNGV-LALGG  325 (394)
Q Consensus       269 --~~------~~~h~~~v~~l~~~--~~~l~s~s~D----g~i~vwd----~~~~~~~~~~----~~~~~~~~~-~~~~~  325 (394)
                        ..      +.+|...+..++|+  ++++++....    ..|.+||    +.+++....+    ..+...... .....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  317 (719)
T 1z68_A          238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP  317 (719)
T ss_dssp             CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred             ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc
Confidence              12      33577788999998  4455553322    2488899    6665544333    122222220 00023


Q ss_pred             eECCCCCcEEE-EEeCCC--eEEEEECCCCceeEEEec-CCcEEEEEECCCC-EE-EEEeC----CCeEEEEeCCC
Q 016134          326 LNDPDGKPVLI-CACNDN--TVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF-FTGDG----AGMLGVWKLLA  391 (394)
Q Consensus       326 ~~s~~g~~~l~-sgs~dg--~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l-~tgs~----Dg~I~vWd~~~  391 (394)
                      .|+|+|+.+++ +...++  .|.+||+.+++. ..+.. ...+..+.+. ++ .| +++..    ++.+++|.+..
T Consensus       318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            46999985544 344555  577778776653 33333 4457777766 66 44 44444    48899998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.62  E-value=3.4e-14  Score=132.24  Aligned_cols=232  Identities=9%  Similarity=-0.038  Sum_probs=148.2

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      .+..+++++.|.+|++||++++......           ..+....+..+. ++|++.++....   ..++.|.+||+.+
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~-----------~~~~~~~~~~~~-~s~dg~~~~v~~---~~~~~i~~~d~~t   74 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSC-----------VMPDKFGPGTAM-MAPDNRTAYVLN---NHYGDIYGIDLDT   74 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEE-----------ECSSCCSSCEEE-ECTTSSEEEEEE---TTTTEEEEEETTT
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEE-----------ecCCCCCCceeE-ECCCCCEEEEEe---CCCCcEEEEeCCC
Confidence            5667788899999999999987653211           111111345566 888887554222   3345899999988


Q ss_pred             CceEEEEecc-c-----CCCeEEEEecCCCCEEEEEeCC------------Cc--eeecCCCcEEEecCCCCcEEEEEEc
Q 016134          163 GLTMLAKLEG-H-----EKAVSGIALPLRSDKLFSGSRD------------GT--AWNIESSAEFSLDGPVGEVYSMVVA  222 (394)
Q Consensus       163 ~~~~~~~l~~-h-----~~~V~~l~~s~~~~~l~sgs~D------------g~--vWd~~~~~~~~~~~~~~~v~~l~~~  222 (394)
                      + +.+..+.. +     ...+..++|+|++++|++++.+            +.  +||+++++.....      ...   
T Consensus        75 ~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------~~~---  144 (349)
T 1jmx_B           75 C-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV------RTF---  144 (349)
T ss_dssp             T-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS------EEE---
T ss_pred             C-cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee------eec---
Confidence            7 55555543 2     2348899999999999999865            44  5888775432100      000   


Q ss_pred             CCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC-------------------------
Q 016134          223 NEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT-------------------------  275 (394)
Q Consensus       223 ~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~-------------------------  275 (394)
                                .+...+.+++|+  ++ +++++.  .|.+||+.+++.+..+..+.                         
T Consensus       145 ----------~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (349)
T 1jmx_B          145 ----------PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  211 (349)
T ss_dssp             ----------ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             ----------cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence                      112235555665  34 444433  38888887777666654331                         


Q ss_pred             -------------------------------------------CCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceee
Q 016134          276 -------------------------------------------DAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLE  309 (394)
Q Consensus       276 -------------------------------------------~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~  309 (394)
                                                                 ..+..++++   +++++++  ++.|.+||+.+++.+.
T Consensus       212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred             eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence                                                       122333443   5577776  8899999999887766


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      .+..... ..    .+.|+|+++ .|++++.++.|++||+.+++.+..+..
T Consensus       290 ~~~~~~~-~~----~~~~s~dg~-~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          290 AANLDHT-YY----CVAFDKKGD-KLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEECSSC-CC----EEEECSSSS-CEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCC-cc----ceEECCCCC-EEEEecCCCeEEEEeccccceeeeeec
Confidence            6543222 22    234699998 555578889999999999988877754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.58  E-value=9.1e-14  Score=131.72  Aligned_cols=273  Identities=11%  Similarity=-0.042  Sum_probs=164.4

Q ss_pred             CcccccccccccccCCC-CCc--ccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCC
Q 016134           76 PSYNRLKNNLWVSSGSE-DRI--PHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDEC  152 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~-d~~--~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~  152 (394)
                      .+|++  ++.+|+..+. |..  +.+||++++.....            ..++...+.... |+|++.+|+....+    
T Consensus        41 ~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------t~~~~~~~~~~~-~spdg~~l~~~~~~----  101 (388)
T 3pe7_A           41 KCFTR--DGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------TEGRGDNTFGGF-LSPDDDALFYVKDG----  101 (388)
T ss_dssp             CCBCT--TSCEEEEEECTTSSCEEEEEETTTCEEEEC------------CCSSCBCSSSCE-ECTTSSEEEEEETT----
T ss_pred             ccCCC--CCCEEEEEEcCCCCceEEEEeCCCCceEEe------------eeCCCCCccceE-EcCCCCEEEEEeCC----
Confidence            56787  8888998887 554  66778887764321            223333333445 99999998866543    


Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEE--ecCCCCEEEEEe----------------------CCCc--eeecCCCcE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIA--LPLRSDKLFSGS----------------------RDGT--AWNIESSAE  206 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~--~s~~~~~l~sgs----------------------~Dg~--vWd~~~~~~  206 (394)
                      ..|++||+.++ +....+..+...+....  +++++++|+...                      .+..  +||+.+++.
T Consensus       102 ~~l~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATL-EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTC-CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCC-cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            48999999887 44555566666665444  489999988543                      1122  588888776


Q ss_pred             EEecCCCCcEEEEEEcC-CEEEEEecCCCCCCEEEEEecCCeEEEEeC------CCeEEEEeCCCCceeEEEcCCC--CC
Q 016134          207 FSLDGPVGEVYSMVVAN-EMLFAGAQDGHTRPVTCLAVGRSRLCSGSM------DNTIRVWELDTLEPVMTLNDHT--DA  277 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~-~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~------Dg~V~iwd~~~~~~~~~~~~h~--~~  277 (394)
                      ..+..+...+..+.|+| +                    ++.|+..+.      +..|.++|+..++ ...+..+.  ..
T Consensus       181 ~~l~~~~~~~~~~~~sp~d--------------------g~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~  239 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYD--------------------DSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGES  239 (388)
T ss_dssp             EEEEEESSCEEEEEEETTE--------------------EEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEE
T ss_pred             EEeecCCccccccEECCCC--------------------CCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcc
Confidence            65554444555566655 4                    123333332      3478888877554 34444444  24


Q ss_pred             cEEEEEc--CCEEEEEeC-CC----cEEEEEeCCCceeeEeecccCCcceEEE---EeeECCCCCcEEEEE--------e
Q 016134          278 PMSLLCW--DQFLLSCSL-DH----TIKVWFATGRGNLEAAYTHKEDNGVLAL---GGLNDPDGKPVLICA--------C  339 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~-Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~g~~~l~sg--------s  339 (394)
                      +..+.|+  ++.|+..+. ++    .|.+||+.+++...... ... ......   ...|+|+|+.++++.        .
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS-MPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE-ECC-EEEEEECTTSSEEEEEECCC------------C
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc-CCC-ceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            6777887  665654433 22    39999998776433221 111 000000   013689998444432        4


Q ss_pred             CCCeEEEEECCCCceeEEEecCC-----------cEEEEEECCCC-EEE-EEeCCCeEEEEeCCC
Q 016134          340 NDNTVHLYELPSFMERGRIFSKH-----------EVRVIEIGPDK-LFF-TGDGAGMLGVWKLLA  391 (394)
Q Consensus       340 ~dg~I~iwd~~~~~~~~~~~~~~-----------~v~~l~~sp~~-~l~-tgs~Dg~I~vWd~~~  391 (394)
                      .+..|++||+.+++......+..           .+..++|+||| .|+ ++..++...||.++-
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            56799999999876543333333           47889999999 444 555678777776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=6.9e-12  Score=113.83  Aligned_cols=234  Identities=10%  Similarity=0.081  Sum_probs=152.9

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEec------ccCCCeEEEEe-cCCCCEEEEEeC-C
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLE------GHEKAVSGIAL-PLRSDKLFSGSR-D  195 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~------~h~~~V~~l~~-s~~~~~l~sgs~-D  195 (394)
                      |+......++ +.+.+.+.++...+    +.|++||...  +.+..+.      +|...+.++++ .++++++++... +
T Consensus        27 g~~~~p~~v~-~~~~g~l~v~~~~~----~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~   99 (286)
T 1q7f_A           27 GQFTEPSGVA-VNAQNDIIVADTNN----HRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT   99 (286)
T ss_dssp             TCBSCEEEEE-ECTTCCEEEEEGGG----TEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             CccCCCceEE-ECCCCCEEEEECCC----CEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence            4445667777 77777655544333    4899999863  3444443      35568899999 567776666643 5


Q ss_pred             Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          196 GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       196 g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      +.  +|| .+++.+.....                    .+...+.+++++  ++++++...++.|.+||.. ++.+..+
T Consensus       100 ~~i~~~d-~~g~~~~~~~~--------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~  157 (286)
T 1q7f_A          100 HQIQIYN-QYGQFVRKFGA--------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF  157 (286)
T ss_dssp             CEEEEEC-TTSCEEEEECT--------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             CEEEEEC-CCCcEEEEecC--------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEe
Confidence            55  477 34444321110                    233456777776  5666776778999999964 5666666


Q ss_pred             c--CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC-eEEE
Q 016134          272 N--DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN-TVHL  346 (394)
Q Consensus       272 ~--~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-~I~i  346 (394)
                      .  .+...+..++++  +.++++...++.|++||.. ++.+..+..........  .++++++|. ++++...++ .|.+
T Consensus       158 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~--~i~~d~~G~-l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          158 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPI--GVGINSNGE-ILIADNHNNFNLTI  233 (286)
T ss_dssp             ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEE--EEEECTTCC-EEEEECSSSCEEEE
T ss_pred             CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCc--EEEECCCCC-EEEEeCCCCEEEEE
Confidence            4  345568899998  5566666678999999974 44444443221112222  334689998 888777775 9999


Q ss_pred             EECCCCceeEEEec---CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          347 YELPSFMERGRIFS---KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       347 wd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ||.. ++.+..+..   ...+.+++++|++ ++++ +.|+.|++|++...
T Consensus       234 ~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          234 FTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            9964 555555543   2247899999999 5555 67999999998653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.56  E-value=7.3e-13  Score=125.08  Aligned_cols=239  Identities=9%  Similarity=0.028  Sum_probs=148.6

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcC-CCceEEEEeccc-CCCeEEEEecCCCCE--EEEEe----------
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG-EGLTMLAKLEGH-EKAVSGIALPLRSDK--LFSGS----------  193 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~-~~~~~~~~l~~h-~~~V~~l~~s~~~~~--l~sgs----------  193 (394)
                      .+..++ ++|++.+++....+     .|.+|++. ++ ++....... .+.+..++|+|++++  ++++.          
T Consensus        41 ~~~~~a-~spdg~~l~~~~~~-----~v~~~~~~~~g-~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           41 PISWMT-FDHERKNIYGAAMK-----KWSSFAVKSPT-EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CCSEEE-ECTTSSEEEEEEBT-----EEEEEEEEETT-EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCcEEE-ECCCCCEEEEEccc-----eEEEEEECCCC-CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            455666 89999887655443     79999986 55 443332211 133667899999995  45553          


Q ss_pred             ---CCCc--eeecCC-CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe-CCCeEEEEeCC-
Q 016134          194 ---RDGT--AWNIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS-MDNTIRVWELD-  263 (394)
Q Consensus       194 ---~Dg~--vWd~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~-  263 (394)
                         .++.  +|++.. ++.....      ..+           ...+...+.+++|+  +++|+++. .++.|++||+. 
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~------~~~-----------~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~  176 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNV------QNY-----------EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA  176 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEE------EEE-----------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eecCCceEEEEccCCCCcCcceE------eeE-----------EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC
Confidence               4665  688863 4432110      000           00234567788887  56676665 36899999998 


Q ss_pred             CCcee--EEEc--CCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeC--CCcee---eEeecccCC---cce------EE
Q 016134          264 TLEPV--MTLN--DHTDAPMSLLCW--DQFLLSCSL-DHTIKVWFAT--GRGNL---EAAYTHKED---NGV------LA  322 (394)
Q Consensus       264 ~~~~~--~~~~--~h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~--~~~~~---~~~~~~~~~---~~~------~~  322 (394)
                      +++..  ..+.  .|...+..++|+  +++|++++. ++.|.+|++.  +++..   ..+......   ...      ..
T Consensus       177 ~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          177 SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            67643  3343  245678899998  678877775 7899999876  33332   112211111   010      23


Q ss_pred             EEee-ECCCCCcEEEEEeC-CC-----eEEEEECC-CCceeEE---Ee-cCCcEEEEEECC---CC-EEEEEeC-CCeEE
Q 016134          323 LGGL-NDPDGKPVLICACN-DN-----TVHLYELP-SFMERGR---IF-SKHEVRVIEIGP---DK-LFFTGDG-AGMLG  385 (394)
Q Consensus       323 ~~~~-~s~~g~~~l~sgs~-dg-----~I~iwd~~-~~~~~~~---~~-~~~~v~~l~~sp---~~-~l~tgs~-Dg~I~  385 (394)
                      ..+. ++|+|+ +|+++.. +.     .|.+|++. +++....   .. ....+..++|+|   |+ +|++++. ++.|.
T Consensus       257 ~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          257 ADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             ccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            3456 799999 5555443 33     89999996 5554331   22 234567889999   78 8888876 48999


Q ss_pred             EEeCCC
Q 016134          386 VWKLLA  391 (394)
Q Consensus       386 vWd~~~  391 (394)
                      +|+++.
T Consensus       336 v~~~~~  341 (365)
T 1jof_A          336 IYRWKD  341 (365)
T ss_dssp             EEEEET
T ss_pred             EEEEch
Confidence            999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.55  E-value=2.4e-12  Score=119.86  Aligned_cols=222  Identities=13%  Similarity=0.045  Sum_probs=149.8

Q ss_pred             CeEEEEEcCCCceEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCc--EEEecCCCCcEEEEEEcCCEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSA--EFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~--~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      +.|.+||..++ +.+..+. ++-.....|+++++++++++...++.|  ||.+...  ...+.....             
T Consensus        69 ~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-------------  134 (329)
T 3fvz_A           69 DTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-------------  134 (329)
T ss_dssp             CCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-------------
T ss_pred             CcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-------------
Confidence            47999999877 4444443 556789999999999988888877774  7765442  222211000             


Q ss_pred             EEecCCCCCCEEEEEec---CCeEEEEe-CCCeEEEEeCCCCceeEEEcC----------CCCCcEEEEEc---CCEEEE
Q 016134          228 AGAQDGHTRPVTCLAVG---RSRLCSGS-MDNTIRVWELDTLEPVMTLND----------HTDAPMSLLCW---DQFLLS  290 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~---~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~----------h~~~v~~l~~~---~~~l~s  290 (394)
                      .+...++......|+++   +.++++.+ .++.|++|| .+++.+..+..          +...+..++++   +.++++
T Consensus       135 ~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~  213 (329)
T 3fvz_A          135 PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA  213 (329)
T ss_dssp             CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred             CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence            00112455567888886   34566665 589999999 55777777642          22347889987   345666


Q ss_pred             EeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC------CCCcEEEEEeCCCeEEEEECCCCceeEEEe----c
Q 016134          291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP------DGKPVLICACNDNTVHLYELPSFMERGRIF----S  360 (394)
Q Consensus       291 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~  360 (394)
                      ...+++|++||..+++.+..+...........  ..++|      ++. ++++...+..|++||+.+++.+..+.    .
T Consensus       214 d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~  290 (329)
T 3fvz_A          214 DRENGRIQCFKTDTKEFVREIKHASFGRNVFA--ISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH  290 (329)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCTTTTTCEEE--EEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCEEEEECCSSSC
T ss_pred             ECCCCEEEEEECCCCcEEEEEeccccCCCcce--eeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeEEEEEcCCCCc
Confidence            66788999999987777766644332223333  34567      232 22223345589999999998888774    2


Q ss_pred             CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ...+..|+++|+| ++++...++.|++|++..+
T Consensus       291 ~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          291 FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             cCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            4458999999999 8888889999999998654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.55  E-value=2e-13  Score=141.09  Aligned_cols=297  Identities=9%  Similarity=0.006  Sum_probs=177.4

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCc-----cceeeeccccccccccCCCee
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDK-----STSKKTTLKNVCCHWLLGNCV  147 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~-----~~v~~~~~~~~~~~~~~~~~~  147 (394)
                      ....+|++  ++..++++  |++|++||+.++....            ...++.     .....+. ++|++.+|+....
T Consensus        19 ~~~~~w~~--dg~~~~~~--~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~Spdg~~l~~~~~   81 (740)
T 4a5s_A           19 LYSLRWIS--DHEYLYKQ--ENNILVFNAEYGNSSV------------FLENSTFDEFGHSINDYS-ISPDGQFILLEYN   81 (740)
T ss_dssp             CCCEEECS--SSEEEEEE--TTEEEEEETTTCCEEE------------EECTTTTTTCCSCCCEEE-ECTTSSEEEEEEE
T ss_pred             ccccEECC--CCcEEEEc--CCcEEEEECCCCceEE------------EEechhhhhhcccccceE-ECCCCCEEEEEEC
Confidence            44667877  77777774  8999999999887421            111111     1122355 8999999987766


Q ss_pred             cCCC-----CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEec--CCCCcE--
Q 016134          148 RGDE-----CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLD--GPVGEV--  216 (394)
Q Consensus       148 ~g~~-----~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~--~~~~~v--  216 (394)
                      +...     .+.+.+||+.++ + ...+..|...+...+|||||+.||.+.. +.  +|++.+++...+.  +....+  
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~-~-~~~l~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~~~lt~~g~~~~~~~  158 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPSYRITWTGKEDIIYN  158 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred             CeeeEEEccceEEEEEECCCC-c-EEEcccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCceEEEcCCCCccceec
Confidence            4322     247889999887 4 3457788889999999999999999864 45  6898888766543  222222  


Q ss_pred             ---------------EEEEEcCC--EEEEEecCCCCCCEEEEEec-CC-----eE------EEEeC--CCeEEEEeCCC-
Q 016134          217 ---------------YSMVVANE--MLFAGAQDGHTRPVTCLAVG-RS-----RL------CSGSM--DNTIRVWELDT-  264 (394)
Q Consensus       217 ---------------~~l~~~~~--~l~~~~~~~h~~~V~~l~~~-~~-----~l------~sgs~--Dg~V~iwd~~~-  264 (394)
                                     ..+.|+||  .|+....+...-.+..+.+. ..     ..      ..|..  +.+|++||+.+ 
T Consensus       159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~  238 (740)
T 4a5s_A          159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL  238 (740)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred             CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence                           24889998  67766655433333333321 00     00      01111  22689999998 


Q ss_pred             --Cc--eeEEEc------CCCCCcEEEEEc--CCEEEEEeC----CCcEEEEEeCCCc----ee--eEe--ecccCCcce
Q 016134          265 --LE--PVMTLN------DHTDAPMSLLCW--DQFLLSCSL----DHTIKVWFATGRG----NL--EAA--YTHKEDNGV  320 (394)
Q Consensus       265 --~~--~~~~~~------~h~~~v~~l~~~--~~~l~s~s~----Dg~i~vwd~~~~~----~~--~~~--~~~~~~~~~  320 (394)
                        ++  ....+.      +|...+..+.|+  ++.++....    +..|++||+.+++    +.  ..+  ..+......
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR  318 (740)
T ss_dssp             CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred             CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence              73  233444      377788999998  565554432    3479999998876    22  111  112211110


Q ss_pred             -EEEEeeECCCCCcEEEEEeC-C--CeEEEEECCCCceeEEEecCCcEEEEE-ECCCC-EEEEEeC----CCeEEEEeCC
Q 016134          321 -LALGGLNDPDGKPVLICACN-D--NTVHLYELPSFMERGRIFSKHEVRVIE-IGPDK-LFFTGDG----AGMLGVWKLL  390 (394)
Q Consensus       321 -~~~~~~~s~~g~~~l~sgs~-d--g~I~iwd~~~~~~~~~~~~~~~v~~l~-~sp~~-~l~tgs~----Dg~I~vWd~~  390 (394)
                       ......|+|||+.+++..+. +  ..|++||+..+...........|..+. ++ ++ +++++..    .+...||.++
T Consensus       319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEE
Confidence             01123479999944425543 3  468888888765443333344566554 44 33 5555554    3445555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.54  E-value=3.7e-12  Score=119.63  Aligned_cols=261  Identities=8%  Similarity=0.077  Sum_probs=160.3

Q ss_pred             CCCCcccccccCC--CCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC--C-ce
Q 016134           91 SEDRIPHVRNREN--PGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE--G-LT  165 (394)
Q Consensus        91 s~d~~~~~w~~~~--~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~--~-~~  165 (394)
                      +.++.+.+|.++.  +.+....          ..  +......++ ++|++.+++....++...+.|.+|++..  + .+
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~----------~~--~~~~p~~l~-~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLS----------DA--EVANPSYLI-PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEE----------EE--ECSCCCSEE-ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEee----------cc--cCCCCceEE-ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            4578899997753  4432111          01  233455566 9999999887777655567999998854  3 23


Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCCcEEE-------ecC--------CCCcEEEEEEcCC--E
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESSAEFS-------LDG--------PVGEVYSMVVANE--M  225 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~~~-------~~~--------~~~~v~~l~~~~~--~  225 (394)
                      .+.....+......+++  ++++|++++. ++.  +|++.....+.       ..+        ....+..++|+|+  .
T Consensus        91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~  168 (361)
T 3scy_A           91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY  168 (361)
T ss_dssp             EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred             EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence            44555556677888888  8888887774 555  69987543221       111        1234578999987  4


Q ss_pred             EEEEecC----------CC----------------------CCCEEEEEec--CCeEEEEe-CCCeEEEEeCCCCce--e
Q 016134          226 LFAGAQD----------GH----------------------TRPVTCLAVG--RSRLCSGS-MDNTIRVWELDTLEP--V  268 (394)
Q Consensus       226 l~~~~~~----------~h----------------------~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~~~~~--~  268 (394)
                      ++++...          ..                      ...+..++|+  ++++++++ .++.|.+||+++++.  +
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            5554432          11                      1235567887  56676666 689999999987654  3


Q ss_pred             EEEc---CCCCCcEEEEEc--CCEEEEEeCC--CcEEEEEeC--CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe
Q 016134          269 MTLN---DHTDAPMSLLCW--DQFLLSCSLD--HTIKVWFAT--GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC  339 (394)
Q Consensus       269 ~~~~---~h~~~v~~l~~~--~~~l~s~s~D--g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs  339 (394)
                      ..+.   .+...+..++|+  +++|+++..+  +.|.+|++.  +++ +..+..........  .+.|+|+|+ +|++++
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~g~~~~--~~~~spdg~-~l~~~~  324 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLTGIHPR--NFIITPNGK-YLLVAC  324 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEECSSCCC--EEEECTTSC-EEEEEE
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecCCCCCc--eEEECCCCC-EEEEEE
Confidence            3332   233456788998  7778666654  899999996  233 22221111111222  234699999 555555


Q ss_pred             -CCCeEEEEEC--CCCceeEEEe--cCCcEEEEEEC
Q 016134          340 -NDNTVHLYEL--PSFMERGRIF--SKHEVRVIEIG  370 (394)
Q Consensus       340 -~dg~I~iwd~--~~~~~~~~~~--~~~~v~~l~~s  370 (394)
                       .++.|.+|++  .+++......  ....+.||.|.
T Consensus       325 ~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          325 RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence             7899999655  4555433221  13468888885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.52  E-value=3.4e-14  Score=146.16  Aligned_cols=227  Identities=12%  Similarity=0.037  Sum_probs=143.9

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCC---CeEEEEecCCCCEEEEEeC---------CCc--eee
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEK---AVSGIALPLRSDKLFSGSR---------DGT--AWN  200 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~---~V~~l~~s~~~~~l~sgs~---------Dg~--vWd  200 (394)
                      |+|++.++++.     .++.|++||+.++ +....+.+|..   .|.+++|+|||++|++++.         ++.  +||
T Consensus        23 ~s~dg~~~~~~-----~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           23 WISGQEYLHQS-----ADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             ESSSSEEEEEC-----TTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ECCCCeEEEEc-----CCCCEEEEEcCCC-cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            88888766543     2569999999887 55666666654   4999999999999998886         455  699


Q ss_pred             cCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCC
Q 016134          201 IESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDA  277 (394)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~  277 (394)
                      +++++.+.....                      ...+..++|+  ++.|+.+. |+.|++||+.++++.+.. .++...
T Consensus        97 ~~~g~~~~~~~l----------------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~  153 (719)
T 1z68_A           97 LSNGEFVRGNEL----------------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK  153 (719)
T ss_dssp             TTTTEECCSSCC----------------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT
T ss_pred             CCCCccccceec----------------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC
Confidence            988876210111                      1234455665  56777775 789999999888765432 222222


Q ss_pred             c-----------------EEEEEc--CCEEEEEeCCC----------------------------------cEEEEEeCC
Q 016134          278 P-----------------MSLLCW--DQFLLSCSLDH----------------------------------TIKVWFATG  304 (394)
Q Consensus       278 v-----------------~~l~~~--~~~l~s~s~Dg----------------------------------~i~vwd~~~  304 (394)
                      |                 .++.|+  |++|++++.|.                                  .|++||+.+
T Consensus       154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~  233 (719)
T 1z68_A          154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY  233 (719)
T ss_dssp             EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred             eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence            2                 478888  78999887652                                  788999987


Q ss_pred             Ccee--eEeec-c-cCCcceEEEEeeECCCCCcEEEEEeCC----CeEEEEE----CCCCceeEEE-----ecCCcEE--
Q 016134          305 RGNL--EAAYT-H-KEDNGVLALGGLNDPDGKPVLICACND----NTVHLYE----LPSFMERGRI-----FSKHEVR--  365 (394)
Q Consensus       305 ~~~~--~~~~~-~-~~~~~~~~~~~~~s~~g~~~l~sgs~d----g~I~iwd----~~~~~~~~~~-----~~~~~v~--  365 (394)
                      ++..  ..+.. . ..........+.|+||++ ++++....    ..|.+||    +.+++....+     .+...+.  
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~  312 (719)
T 1z68_A          234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGF  312 (719)
T ss_dssp             HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSS
T ss_pred             CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccc
Confidence            6542  11110 0 001122233456899976 77664322    2488899    7766544332     2234455  


Q ss_pred             ---EEEECCCC-EEE--EEeCCC--eEEEEeCCC
Q 016134          366 ---VIEIGPDK-LFF--TGDGAG--MLGVWKLLA  391 (394)
Q Consensus       366 ---~l~~sp~~-~l~--tgs~Dg--~I~vWd~~~  391 (394)
                         .++|+||| .|+  +...++  .|.+|++..
T Consensus       313 ~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          313 FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred             cCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence               78999999 333  455666  466666544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.51  E-value=3.3e-13  Score=139.54  Aligned_cols=230  Identities=9%  Similarity=-0.021  Sum_probs=144.9

Q ss_pred             eeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCC-----eEEEEecCCCCEEEEEeCCCc--------
Q 016134          131 KTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKA-----VSGIALPLRSDKLFSGSRDGT--------  197 (394)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~-----V~~l~~s~~~~~l~sgs~Dg~--------  197 (394)
                      .+. |+|++.++++.      ++.|++||+.++ +....+.+|...     ..+++|+|||++|+.++.+..        
T Consensus        21 ~~~-w~~dg~~~~~~------~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           21 SLR-WISDHEYLYKQ------ENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CEE-ECSSSEEEEEE------TTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccE-ECCCCcEEEEc------CCcEEEEECCCC-ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            455 99999888764      459999999888 556677777643     345789999999999988643        


Q ss_pred             ---eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEE-E
Q 016134          198 ---AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMT-L  271 (394)
Q Consensus       198 ---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~-~  271 (394)
                         +||+++++...+..+.                      ..+...+|+  ++.|+.+ .|+.|++||+.+++..+. .
T Consensus        93 ~~~~~d~~~~~~~~l~~~~----------------------~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~  149 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEERIP----------------------NNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW  149 (740)
T ss_dssp             EEEEEETTTTEECCSSCCC----------------------TTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS
T ss_pred             EEEEEECCCCcEEEcccCC----------------------CcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC
Confidence               7899988876554443                      345555555  5667766 468999999988775442 1


Q ss_pred             cCCCCCc-----------------EEEEEc--CCEEEEEeCCC------------------------------------c
Q 016134          272 NDHTDAP-----------------MSLLCW--DQFLLSCSLDH------------------------------------T  296 (394)
Q Consensus       272 ~~h~~~v-----------------~~l~~~--~~~l~s~s~Dg------------------------------------~  296 (394)
                      .++...+                 ..+.|+  |+.|+..+.|.                                    +
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence            2222222                 246777  78888775332                                    4


Q ss_pred             EEEEEeCC---Cc--eeeEeecccC--CcceEEEEeeECCCCCcEEEEEe----CCCeEEEEECCCCc----e--eEEE-
Q 016134          297 IKVWFATG---RG--NLEAAYTHKE--DNGVLALGGLNDPDGKPVLICAC----NDNTVHLYELPSFM----E--RGRI-  358 (394)
Q Consensus       297 i~vwd~~~---~~--~~~~~~~~~~--~~~~~~~~~~~s~~g~~~l~sgs----~dg~I~iwd~~~~~----~--~~~~-  358 (394)
                      |++||+.+   ++  ....+.....  ........+.|+|||+ +++...    .+..|++||+.+++    +  ...+ 
T Consensus       230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~  308 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI  308 (740)
T ss_dssp             EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred             EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence            77788776   52  1222221000  0122233456899998 555442    23479999999876    1  1111 


Q ss_pred             --ecCCcE-----EEEEECCCC-EEE-EEe-CCC--eEEEEeCCCC
Q 016134          359 --FSKHEV-----RVIEIGPDK-LFF-TGD-GAG--MLGVWKLLAK  392 (394)
Q Consensus       359 --~~~~~v-----~~l~~sp~~-~l~-tgs-~Dg--~I~vWd~~~~  392 (394)
                        .+...|     ..++|+||| .|+ ..+ .+|  .|.+|++..+
T Consensus       309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence              123333     378899999 554 554 444  5777777643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.50  E-value=3.7e-12  Score=120.28  Aligned_cols=220  Identities=10%  Similarity=0.037  Sum_probs=132.6

Q ss_pred             cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC----------CCc--eeecCCCcEEE-ecCCCC
Q 016134          148 RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR----------DGT--AWNIESSAEFS-LDGPVG  214 (394)
Q Consensus       148 ~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----------Dg~--vWd~~~~~~~~-~~~~~~  214 (394)
                      +...++.|.+||..++ +.+.++..+..+  .++|+||+++|+++..          ++.  +||..+.+.+. +.....
T Consensus        26 ~~~~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~  102 (361)
T 2oiz_A           26 MHLTESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK  102 (361)
T ss_dssp             GGGGGCEEEEEETTTC-CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred             CccccCeEEEEECCCC-eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence            3344669999999887 667777777666  8999999999999873          333  69998877652 211100


Q ss_pred             cEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC--CCeEEEEeCCCCceeEE-EcCCCCCcEEEEEc---CC
Q 016134          215 EVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM--DNTIRVWELDTLEPVMT-LNDHTDAPMSLLCW---DQ  286 (394)
Q Consensus       215 ~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~--Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~---~~  286 (394)
                      ..                .+......++++  +++|+++..  +++|.+||+++++.+.+ +... . ...+.+.   ..
T Consensus       103 ~~----------------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~  164 (361)
T 2oiz_A          103 RV----------------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR  164 (361)
T ss_dssp             BC----------------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred             cc----------------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence            00                011223334554  566666653  46788888877776666 4321 1 1111112   13


Q ss_pred             EEEEEeCCCcEEEEEeCC-Ccee-------------------------------------------------eEeeccc-
Q 016134          287 FLLSCSLDHTIKVWFATG-RGNL-------------------------------------------------EAAYTHK-  315 (394)
Q Consensus       287 ~l~s~s~Dg~i~vwd~~~-~~~~-------------------------------------------------~~~~~~~-  315 (394)
                      .+++.+.|+++.+|++.. ++..                                                 ..+.... 
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  244 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND  244 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence            444445555555555432 1111                                                 0000000 


Q ss_pred             -------CCcceEEEEeeECCCCCcEEEEEe----------CCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEE
Q 016134          316 -------EDNGVLALGGLNDPDGKPVLICAC----------NDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       316 -------~~~~~~~~~~~~s~~g~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~t  377 (394)
                             .+....  ...++|+++.++++..          ..+.|.+||+.+++.+..+.... +.+++|+||+ +|++
T Consensus       245 ~~~~~~~~p~g~~--~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          245 EDKAKNWVPGGYN--LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             HHHHTTCEECCSS--CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEE
T ss_pred             cccccccccCCee--EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEE
Confidence                   000000  0245888885555544          13589999999999999988766 9999999999 8887


Q ss_pred             EeCCCeEEEEeCCCC
Q 016134          378 GDGAGMLGVWKLLAK  392 (394)
Q Consensus       378 gs~Dg~I~vWd~~~~  392 (394)
                      ++. +.|.+||+.+.
T Consensus       322 ~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          322 LDG-GNVNVYDISQP  335 (361)
T ss_dssp             ECS-SCEEEEECSSS
T ss_pred             eCC-CeEEEEECCCC
Confidence            776 99999998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.48  E-value=1e-11  Score=117.11  Aligned_cols=213  Identities=8%  Similarity=0.044  Sum_probs=129.7

Q ss_pred             eEEEEEc--CCCc-eEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc--eeecC-CCcEEEecCCCCcEEEEEEcCCEE
Q 016134          154 FLHSWFC--GEGL-TMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE-SSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       154 ~i~iWd~--~~~~-~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~-~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      .|.+|++  .++. +.+.... ++...+..++|+|++++|++++.+ .  +|++. +++...+..+.             
T Consensus        15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-------------   80 (365)
T 1jof_A           15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-------------   80 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-------------
T ss_pred             cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-------------
Confidence            5666654  4441 2222221 344578899999999999999888 5  69986 66543221100             


Q ss_pred             EEEecCCCCCCEEEEEec--CC--eEEEEe-------------CCCeEEEEeCC-CCceeEEEc----CCCCCcEEEEEc
Q 016134          227 FAGAQDGHTRPVTCLAVG--RS--RLCSGS-------------MDNTIRVWELD-TLEPVMTLN----DHTDAPMSLLCW  284 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~--~l~sgs-------------~Dg~V~iwd~~-~~~~~~~~~----~h~~~v~~l~~~  284 (394)
                            .+ ..+..++|+  ++  +++++.             .++++.+|++. .++....+.    .+...+.+++|+
T Consensus        81 ------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           81 ------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             ------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred             ------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence                  00 012224444  33  233442             68999999997 466544443    245678999998


Q ss_pred             --CCEEEEEeC-CCcEEEEEeC-CCceeeE--eecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECC--CCcee
Q 016134          285 --DQFLLSCSL-DHTIKVWFAT-GRGNLEA--AYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELP--SFMER  355 (394)
Q Consensus       285 --~~~l~s~s~-Dg~i~vwd~~-~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~--~~~~~  355 (394)
                        +++|+++.. ++.|++||+. +++....  +..........  .+.|+|+|+ +|++++ .++.|.+|++.  +++..
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~--~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR--WVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE--EEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC--EeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEE
Confidence              677777664 6899999998 5543221  11111112222  335799999 555554 57899999875  45442


Q ss_pred             ---EEEec--C-----C-------cEEEEE-ECCCC-EEEEEeCC-C-----eEEEEeCC
Q 016134          356 ---GRIFS--K-----H-------EVRVIE-IGPDK-LFFTGDGA-G-----MLGVWKLL  390 (394)
Q Consensus       356 ---~~~~~--~-----~-------~v~~l~-~sp~~-~l~tgs~D-g-----~I~vWd~~  390 (394)
                         ..+..  .     .       .+..++ |+||| +|+++..+ .     .|.+|++.
T Consensus       231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence               12221  1     1       488999 99999 66665532 2     89999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.47  E-value=4.8e-13  Score=126.77  Aligned_cols=268  Identities=8%  Similarity=-0.093  Sum_probs=154.4

Q ss_pred             CCCcccccccccccccCCC---CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCC
Q 016134           74 SPPSYNRLKNNLWVSSGSE---DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGD  150 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~---d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~  150 (394)
                      ...+|++  ++.+|+..+.   +..+.+|+++++.....            ..+......... |+|++.+|+.....+ 
T Consensus        39 ~~~~~Sp--dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l------------~~~~~~~~~~~~-~spdg~~l~~~~~~~-  102 (396)
T 3c5m_A           39 YQKCFTQ--DGKKLLFAGDFDGNRNYYLLNLETQQAVQL------------TEGKGDNTFGGF-ISTDERAFFYVKNEL-  102 (396)
T ss_dssp             TSCCBCT--TSCEEEEEECTTSSCEEEEEETTTTEEEEC------------CCSSCBCTTTCE-ECTTSSEEEEEETTT-
T ss_pred             ecCcCCC--CCCEEEEEEecCCCceEEEEECCCCcEEEe------------ecCCCCccccce-ECCCCCEEEEEEcCC-
Confidence            4456776  7777775533   34677788887664321            111111122234 899999887655444 


Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEE-------------------EEecCCCCEEEEEe-----CCCc--eeecCCC
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSG-------------------IALPLRSDKLFSGS-----RDGT--AWNIESS  204 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~-------------------l~~s~~~~~l~sgs-----~Dg~--vWd~~~~  204 (394)
                         .|++||+.++ +.......+......                   +.|+|+++.++...     .+..  +||+.++
T Consensus       103 ---~l~~~d~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g  178 (396)
T 3c5m_A          103 ---NLMKVDLETL-EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG  178 (396)
T ss_dssp             ---EEEEEETTTC-CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred             ---cEEEEECCCC-CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence               7999999876 444444444443333                   34567776665443     2223  5788777


Q ss_pred             cEEEecCCCCcEEEEEEcC-CEEEEEecCCCCCCEEEEEecCCeEEEEeCC------CeEEEEeCCCCceeEEEcCCC--
Q 016134          205 AEFSLDGPVGEVYSMVVAN-EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD------NTIRVWELDTLEPVMTLNDHT--  275 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~-~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D------g~V~iwd~~~~~~~~~~~~h~--  275 (394)
                      +...+..+...+..+.|+| +                    +..|+..+.+      ..|.+||+.+++. ..+..+.  
T Consensus       179 ~~~~~~~~~~~~~~~~~sp~d--------------------g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~  237 (396)
T 3c5m_A          179 ELEVIHQDTAWLGHPIYRPFD--------------------DSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEG  237 (396)
T ss_dssp             CEEEEEEESSCEEEEEEETTE--------------------EEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTT
T ss_pred             cEEeeccCCcccccceECCCC--------------------CCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCC
Confidence            7654443334444444444 2                    1223333322      4688899876543 3333332  


Q ss_pred             CCcEEEEEc--CCEEEEEeCC-----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECC-CCCcEEEEEe--------
Q 016134          276 DAPMSLLCW--DQFLLSCSLD-----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICAC--------  339 (394)
Q Consensus       276 ~~v~~l~~~--~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs--------  339 (394)
                      ..+..+.|+  ++.|+..+.+     +.|.+||+.+++...... ... .   .  ..|+| +|+ +|+.++        
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~---~--~~~s~~dg~-~l~~~~~~~p~~~~  309 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-C---S--HLMSNFDGS-LMVGDGCDAPVDVA  309 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-E---E--EEEECSSSS-EEEEEECCC-----
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-C---C--CCccCCCCc-eEEEecCCcceeec
Confidence            246777887  6666666543     449999998765433221 111 1   1  34688 998 666544        


Q ss_pred             --------CCCeEEEEECCCCceeEEEecCC-----------cEEEEEECCCC-EEEEEe-CCCeEEEEeCC
Q 016134          340 --------NDNTVHLYELPSFMERGRIFSKH-----------EVRVIEIGPDK-LFFTGD-GAGMLGVWKLL  390 (394)
Q Consensus       340 --------~dg~I~iwd~~~~~~~~~~~~~~-----------~v~~l~~sp~~-~l~tgs-~Dg~I~vWd~~  390 (394)
                              .+..|++||+.+++......+..           .+..++|+|++ .|+..+ .++...||.++
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          310 DADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             -----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                    34789999998876543222222           25678999999 555554 46666666544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.47  E-value=2.5e-12  Score=130.89  Aligned_cols=225  Identities=8%  Similarity=-0.080  Sum_probs=137.9

Q ss_pred             cccccc-cCCCeecCCCCCeEEEEEcC--C-CceEEEEecc-----cCCCeEEEEecCCCCEEEEEeCC----------C
Q 016134          136 NVCCHW-LLGNCVRGDECRFLHSWFCG--E-GLTMLAKLEG-----HEKAVSGIALPLRSDKLFSGSRD----------G  196 (394)
Q Consensus       136 ~~~~~~-~~~~~~~g~~~~~i~iWd~~--~-~~~~~~~l~~-----h~~~V~~l~~s~~~~~l~sgs~D----------g  196 (394)
                      +|++.+ |+...   +.+..|.+|+..  . + + ...+..     |...+..++|+|||+.|+.++.|          .
T Consensus        87 SPDg~~~la~~~---~~~~~l~~~~~~~~g~~-~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           87 RPAGGPLLVFTH---FGDQRLYAFEPDAPGGA-V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             CSSSSCEEEEEB---TTTCCEEEECTTSTTCC-C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             ecCCCeEEEEEE---CCCCeEEEEcCCCCCCC-C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            388888 66322   224567777775  2 3 2 344555     67789999999999999998876          2


Q ss_pred             c--eeecCC------CcEEEec-CCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCC--------CeEEE
Q 016134          197 T--AWNIES------SAEFSLD-GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD--------NTIRV  259 (394)
Q Consensus       197 ~--vWd~~~------~~~~~~~-~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D--------g~V~i  259 (394)
                      .  +||+.+      ++...+. .+...+..++|+||                    +++|+.++.+        ..|++
T Consensus       162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--------------------G~~la~~~~~~~~~~~~~~~i~~  221 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPD--------------------GRQAVWLAWDHPRMPWEGTELKT  221 (662)
T ss_dssp             EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTT--------------------SSEEEEEEECTTCCTTTCEEEEE
T ss_pred             EEEEEECCCCccccCCceeEEEecCCCcccCceECCC--------------------CCEEEEEECCCCCCCCCCcEEEE
Confidence            2  588887      5555544 33333333333333                    5566665544        37999


Q ss_pred             EeCC-CC---ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC--cEEEEEeCCCceeeEeecccCCcceE-----EEEee
Q 016134          260 WELD-TL---EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH--TIKVWFATGRGNLEAAYTHKEDNGVL-----ALGGL  326 (394)
Q Consensus       260 wd~~-~~---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~  326 (394)
                      ||+. ++   +.......|...+..+.|+  +++++++..++  .|.+||+.+++... +..........     ...+.
T Consensus       222 ~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~  300 (662)
T 3azo_A          222 ARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFA  300 (662)
T ss_dssp             EEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEE
T ss_pred             EEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEe
Confidence            9998 56   4444444567889999998  67778888888  55555654544332 22222111000     01234


Q ss_pred             ECCCCCcEEEEEeCCCeEEEE--ECCCCceeEEEec-CCcEEEE-EECCCC-EEEEEeCCCeEEEEeC
Q 016134          327 NDPDGKPVLICACNDNTVHLY--ELPSFMERGRIFS-KHEVRVI-EIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       327 ~s~~g~~~l~sgs~dg~I~iw--d~~~~~~~~~~~~-~~~v~~l-~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      +++++. +++++.. +.++||  |+.+++ +..+.. ...+..+ +++++. .+++++.+....+|.+
T Consensus       301 ~~~~~~-~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          301 PLANGL-IAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             ECTTSC-EEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EeCCCE-EEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence            578888 8888888 999999  555554 444433 4457766 665555 5556666655555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.44  E-value=6.7e-11  Score=111.58  Aligned_cols=257  Identities=9%  Similarity=-0.006  Sum_probs=161.4

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCc
Q 016134           91 SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGL  164 (394)
Q Consensus        91 s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~  164 (394)
                      ..|+++.+||.+++.....           ...| ...  .++ ++|++.++.....      .|+.+++|.+||..+. 
T Consensus        28 ~~d~~v~v~D~~t~~~~~~-----------i~~g-~~p--~i~-~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-   91 (361)
T 2oiz_A           28 LTESRVHVYDYTNGKFLGM-----------VPTA-FNG--HVQ-VSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-   91 (361)
T ss_dssp             GGGCEEEEEETTTCCEEEE-----------EECC-EEE--EEE-ECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-
T ss_pred             cccCeEEEEECCCCeEEEE-----------ecCC-CCC--ceE-ECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-
Confidence            3478999999988775421           1112 222  566 9999988876553      2445668999999876 


Q ss_pred             eEEEEeccc------CCCeEEEEecCCCCEEEEEeCC--Cc--eeecCCCcEEEe-cCCCCc----------EEEEEEcC
Q 016134          165 TMLAKLEGH------EKAVSGIALPLRSDKLFSGSRD--GT--AWNIESSAEFSL-DGPVGE----------VYSMVVAN  223 (394)
Q Consensus       165 ~~~~~l~~h------~~~V~~l~~s~~~~~l~sgs~D--g~--vWd~~~~~~~~~-~~~~~~----------v~~l~~~~  223 (394)
                      +.+.++...      ......++|+|||++|+++..+  +.  +||+++++.+.. ....+.          -.-+.+++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence            566665432      3456789999999999998753  44  699999887643 222111          11122333


Q ss_pred             C--EEEEEecCCCCCCEEE-E-----------------EecCCeEEEEeCCCeEEEEeCCCCce--eEEEcCCC------
Q 016134          224 E--MLFAGAQDGHTRPVTC-L-----------------AVGRSRLCSGSMDNTIRVWELDTLEP--VMTLNDHT------  275 (394)
Q Consensus       224 ~--~l~~~~~~~h~~~V~~-l-----------------~~~~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~~h~------  275 (394)
                      +  .++.....  ...+.. .                 .-.+..++..+.++.|.++|+...+.  +..+....      
T Consensus       172 dg~~~~v~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~  249 (361)
T 2oiz_A          172 DGGLLTINLGE--DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK  249 (361)
T ss_dssp             TSSEEEEEECT--TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred             CCcEEEEEECC--CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence            3  11111111  011110 0                 01134566667889999999875432  22222110      


Q ss_pred             ----CCcEEEEEc--CCEEEEEeC-----------CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          276 ----DAPMSLLCW--DQFLLSCSL-----------DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       276 ----~~v~~l~~~--~~~l~s~s~-----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                          .....++++  ++.++++..           .+.|.+||+.+.+.+..+..+.  ...+    .++|+|+ +|+++
T Consensus       250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i----a~spdg~-~l~v~  322 (361)
T 2oiz_A          250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSM----TIDQQRN-LMLTL  322 (361)
T ss_dssp             TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEE----EEETTTT-EEEEE
T ss_pred             ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEE----EECCCCC-EEEEe
Confidence                111124555  566665543           3489999999998888776654  2323    4699999 77777


Q ss_pred             eCCCeEEEEECCCC--ceeEEEe-cCCcEEEEEECCCC
Q 016134          339 CNDNTVHLYELPSF--MERGRIF-SKHEVRVIEIGPDK  373 (394)
Q Consensus       339 s~dg~I~iwd~~~~--~~~~~~~-~~~~v~~l~~sp~~  373 (394)
                      +. ++|.+||..++  +.+..+. .......++++|+|
T Consensus       323 n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          323 DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            76 99999999999  8888874 46678899999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.43  E-value=9.8e-12  Score=115.86  Aligned_cols=243  Identities=10%  Similarity=0.017  Sum_probs=145.3

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC-CCCCeEEEEEcCCCceEEEEe
Q 016134           92 EDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG-DECRFLHSWFCGEGLTMLAKL  170 (394)
Q Consensus        92 ~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g-~~~~~i~iWd~~~~~~~~~~l  170 (394)
                      .+..+.+||++++....             .    ..+..+. |+|++.+++.....+ +....|.+|++.++ +.....
T Consensus        41 ~~~~l~~~d~~~~~~~~-------------l----~~~~~~~-~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~  101 (347)
T 2gop_A           41 YENTIVIENLKNNARRF-------------I----ENATMPR-ISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKIL  101 (347)
T ss_dssp             EEEEEEEEETTTCCEEE-------------E----ESCEEEE-ECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEE
T ss_pred             ccceEEEEeCCCCceEE-------------c----ccCCCeE-ECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEE
Confidence            36778888888765321             1    2455666 999999998766543 23345888888776 444443


Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCC------------------C---------c--eeecCCCcE-EEecCCCCcEEEEE
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRD------------------G---------T--AWNIESSAE-FSLDGPVGEVYSMV  220 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~D------------------g---------~--vWd~~~~~~-~~~~~~~~~v~~l~  220 (394)
                      ..+ . +..++|+||++.|+.++.+                  +         .  +||+.+++. ..+.. . .+..+.
T Consensus       102 ~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~  177 (347)
T 2gop_A          102 EAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGI  177 (347)
T ss_dssp             EES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEE
T ss_pred             cCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Cccccc
Confidence            333 3 9999999999999988743                  1         1  477766665 32222 1 333344


Q ss_pred             EcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCC------C-eEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeC
Q 016134          221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD------N-TIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSL  293 (394)
Q Consensus       221 ~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D------g-~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  293 (394)
                      |+|+                    + +++++..+      . ...||.+.+++. ..+..+ ..+..+..+++.|+..+.
T Consensus       178 ~spd--------------------g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~spdg~~l~~~~~  234 (347)
T 2gop_A          178 WHRD--------------------K-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAVDSDGERILLYGK  234 (347)
T ss_dssp             EETT--------------------E-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEEEECSSCEEEEEC
T ss_pred             CCCC--------------------e-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeECCCCCEEEEEEc
Confidence            4333                    2 44444332      1 334443334443 344434 555666444787777765


Q ss_pred             C--------CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEE
Q 016134          294 D--------HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVR  365 (394)
Q Consensus       294 D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~  365 (394)
                      +        ..|.+||  +++. ..+.... ...+.. ...|+ ++  ++++++.++.++|| +.+++....+.....|.
T Consensus       235 ~~~~~~~~~~~l~~~d--~~~~-~~l~~~~-~~~~~~-~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~  305 (347)
T 2gop_A          235 PEKKYMSEHNKLYIYD--GKEV-MGILDEV-DRGVGQ-AKIKD-GK--VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIM  305 (347)
T ss_dssp             CSSSCCCSSCEEEEEC--SSCE-EESSTTC-CSEEEE-EEEET-TE--EEEEEEETTEEEEE-EESSSEEEEECSSSEEE
T ss_pred             cccCCccccceEEEEC--CCce-EeccccC-CcccCC-ccEEc-Cc--EEEEEecCCcEEEE-EcCCceEEEecCCCeEE
Confidence            4        3677777  3333 2222211 111221 13467 66  78888999999999 87665544444466799


Q ss_pred             EEEECCCCEEEEEeCCCeE-EEEeCC
Q 016134          366 VIEIGPDKLFFTGDGAGML-GVWKLL  390 (394)
Q Consensus       366 ~l~~sp~~~l~tgs~Dg~I-~vWd~~  390 (394)
                      +++|+| .++++++.++.. .||.++
T Consensus       306 ~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          306 GFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             eeeeeC-cEEEEEcCCCChHHheEeC
Confidence            999999 877777776654 777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.43  E-value=1.3e-10  Score=119.45  Aligned_cols=248  Identities=7%  Similarity=-0.040  Sum_probs=155.7

Q ss_pred             CCCCccceeeeccccccccccCCCeec-CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVR-GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~-g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---  197 (394)
                      ..++...+..+. |+|++.+++..... |+....|++||+.++ +.+.....+. .+..++|+||++.|+.++.++.   
T Consensus       120 ~~~~~~~~~~~~-~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          120 SDDGTVALRGYA-FSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGK  196 (710)
T ss_dssp             CTTSCEEEEEEE-ECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             ccCCCEEEEEEE-ECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCcccccCc-ccceEEEEeCCCEEEEEEECCcccc
Confidence            345555677888 99999999876654 444468999999888 4443222222 3778999999999998887753   


Q ss_pred             ---------------eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-----CC
Q 016134          198 ---------------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-----DN  255 (394)
Q Consensus       198 ---------------vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-----Dg  255 (394)
                                     +|++.+++...                . ++.....|...+..+.|+  +++|+..+.     +.
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~----------------~-~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  259 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSED----------------I-LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGC----------------E-EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             ccccccccCCCCEEEEEECCCCcccc----------------e-EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence                           36666554110                0 000111234445666665  566665554     67


Q ss_pred             eEEEEeCCC------Cc-eeEEEcCCCCCcEEEE-EcCCEEEEEeCC----CcEEEEEeCCCc--eeeEeecccCCcceE
Q 016134          256 TIRVWELDT------LE-PVMTLNDHTDAPMSLL-CWDQFLLSCSLD----HTIKVWFATGRG--NLEAAYTHKEDNGVL  321 (394)
Q Consensus       256 ~V~iwd~~~------~~-~~~~~~~h~~~v~~l~-~~~~~l~s~s~D----g~i~vwd~~~~~--~~~~~~~~~~~~~~~  321 (394)
                      .|.+||+.+      ++ ....+..+...+.... ..++.|+..+.+    ..|.+||+.++.  ....+..+.....+.
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  339 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE  339 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence            899999976      43 4566666666665532 227766665543    369999987764  234444443322222


Q ss_pred             EEEeeECCCCCcEEEEEeCCCe--EEEEECCCCceeEEEec-CCcEEEEEECCCC-EE-EEEe---CCCeEEEEeCCCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNT--VHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF-FTGD---GAGMLGVWKLLAK  392 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l-~tgs---~Dg~I~vWd~~~~  392 (394)
                      .+  .+++++. ++++...|+.  |.+|++.+++.+..+.. ...+..++++|++ .| ++.+   ..+.|.+||+.+.
T Consensus       340 ~~--~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          340 WV--ACVRSNF-LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EE--EEETTTE-EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EE--EEEcCCE-EEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            22  3455555 8888888885  56677767766655544 5568899999988 33 3333   3578999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.42  E-value=2.2e-10  Score=106.16  Aligned_cols=254  Identities=7%  Similarity=-0.056  Sum_probs=151.6

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ....++..+.+++++.|.-+  ...             ...++...+..+. +.+.+...++..    .++.|.+||..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~-~~~~g~l~~~~~----~~~~i~~~d~~~   75 (333)
T 2dg1_A           16 KSNSAVPIISESELQTITAE--PWL-------------EISKKGLQLEGLN-FDRQGQLFLLDV----FEGNIFKINPET   75 (333)
T ss_dssp             GGGCSSCCCCGGGSCEEECE--EEE-------------EEESSCCCEEEEE-ECTTSCEEEEET----TTCEEEEECTTT
T ss_pred             CccceeEEeecccCcccccc--eeE-------------EEeccCccccCcE-ECCCCCEEEEEC----CCCEEEEEeCCC
Confidence            44456677789999999221  111             1112223456666 777776544333    234899999977


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCC----Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCC
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD----GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTR  236 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D----g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~  236 (394)
                      + +.......+...+.+++++++++++++...+    +.  +||.+++....+...                   ..+..
T Consensus        76 ~-~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------~~~~~  135 (333)
T 2dg1_A           76 K-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-------------------LSTAY  135 (333)
T ss_dssp             C-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------SSSCC
T ss_pred             C-cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------CccCC
Confidence            6 4444344567889999999999988887766    34  477766654322110                   01234


Q ss_pred             CEEEEEec--CCeEEEEeC------CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEeCC-
Q 016134          237 PVTCLAVG--RSRLCSGSM------DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHTIKVWFATG-  304 (394)
Q Consensus       237 ~V~~l~~~--~~~l~sgs~------Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~i~vwd~~~-  304 (394)
                      .+.++.++  ++++++...      .+.|..+|..+++... +..+...+..++++  ++.|+ +...++.|.+||+.. 
T Consensus       136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~  214 (333)
T 2dg1_A          136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  214 (333)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence            56667776  444444432      3566777766555433 22233457788887  55554 445678999999964 


Q ss_pred             CceeeEe-----ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC-------cEEEEEECCC
Q 016134          305 RGNLEAA-----YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH-------EVRVIEIGPD  372 (394)
Q Consensus       305 ~~~~~~~-----~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-------~v~~l~~sp~  372 (394)
                      +..+..+     ......  .....++++++|. ++++...++.|.+||. +++.+..+....       .+.+++|+|+
T Consensus       215 g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          215 GVTIQPFGATIPYYFTGH--EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             SSSEEEEEEEEEEECCSS--SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             CcCcccccceEEEecCCC--CCCCceEECCCCC-EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence            2322211     111111  1222345689998 7777777899999998 455655554422       5899999999


Q ss_pred             C-EEEEEeCC
Q 016134          373 K-LFFTGDGA  381 (394)
Q Consensus       373 ~-~l~tgs~D  381 (394)
                      + .|+.++.+
T Consensus       291 g~~L~v~~~~  300 (333)
T 2dg1_A          291 TNQLIICSND  300 (333)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCEEEEEeCc
Confidence            7 55555444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.36  E-value=2.4e-11  Score=123.62  Aligned_cols=240  Identities=11%  Similarity=-0.038  Sum_probs=149.1

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeE---------EEEec--CCCCE-EEE
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVS---------GIALP--LRSDK-LFS  191 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~---------~l~~s--~~~~~-l~s  191 (394)
                      +|...+..++ +++...+.+.  ...+.++...||....+ ...+.+..|...+.         ...|+  ||+++ |+.
T Consensus        21 ~~~~~~~~~~-~s~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           21 SRSGRPACVG-AVGDEVWWVA--PRPAEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HTCSCCEEEE-EETTEEEEEE--EETTTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             hcCCccceeE-EcCCeEEEEe--cCcccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3444666666 6765444442  22244557889986444 33566777777766         66665  99998 776


Q ss_pred             EeC-CCceeecCC-----CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCC---------
Q 016134          192 GSR-DGTAWNIES-----SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMD---------  254 (394)
Q Consensus       192 gs~-Dg~vWd~~~-----~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~D---------  254 (394)
                      ++. +..||.++.     ++...+.....                 ..|...+..++|+  ++.|++++.|         
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~-----------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSA-----------------VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCC-----------------STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCcc-----------------CCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            654 445766653     33333332100                 0134445556665  5667777666         


Q ss_pred             -CeEEEEeCCC------CceeEEEc-CCCCCcEEEEEc--CCEEEEEeCC--------CcEEEEEeC-CCc--eeeEeec
Q 016134          255 -NTIRVWELDT------LEPVMTLN-DHTDAPMSLLCW--DQFLLSCSLD--------HTIKVWFAT-GRG--NLEAAYT  313 (394)
Q Consensus       255 -g~V~iwd~~~------~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~D--------g~i~vwd~~-~~~--~~~~~~~  313 (394)
                       ..|++||+.+      ++. ..+. .+...+..+.|+  |++|+.++.+        ..|++||+. ++.  ....+..
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence             5899999987      444 4555 555667777887  7888877754        379999998 451  3333332


Q ss_pred             ccCCcceEEEEeeECCCCCcEEEEEeCCC--eEEEEECCCCceeEEEecCCc---------EEEEEECCCC-EEEEEeCC
Q 016134          314 HKEDNGVLALGGLNDPDGKPVLICACNDN--TVHLYELPSFMERGRIFSKHE---------VRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~---------v~~l~~sp~~-~l~tgs~D  381 (394)
                      .. .....  ...|+|||+ +++++..++  .|.+||+.+++..........         +..++|+|++ +++++.. 
T Consensus       239 ~~-~~~~~--~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-  313 (662)
T 3azo_A          239 GP-EEAIA--QAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-  313 (662)
T ss_dssp             ET-TBCEE--EEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred             CC-CceEc--ceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence            21 11222  335799999 888888888  666667656654332222111         5678999998 8888888 


Q ss_pred             CeEEEEeCC
Q 016134          382 GMLGVWKLL  390 (394)
Q Consensus       382 g~I~vWd~~  390 (394)
                      +.++||.++
T Consensus       314 ~~~~l~~~d  322 (662)
T 3azo_A          314 GAAVLGILD  322 (662)
T ss_dssp             SSCEEEEEE
T ss_pred             CccEEEEEE
Confidence            999999544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.34  E-value=1.9e-10  Score=108.63  Aligned_cols=207  Identities=11%  Similarity=-0.023  Sum_probs=134.4

Q ss_pred             EEcCCCceEEEEecccCCCeEE-----EEecCCCCEEEEEeC-CCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          158 WFCGEGLTMLAKLEGHEKAVSG-----IALPLRSDKLFSGSR-DGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       158 Wd~~~~~~~~~~l~~h~~~V~~-----l~~s~~~~~l~sgs~-Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      +|..++ ..+..+..|......     .+|+|||++|+.++. ++.    +||+++++...+..                
T Consensus        15 ~~~~~g-~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~----------------   77 (388)
T 3pe7_A           15 QDASTG-AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE----------------   77 (388)
T ss_dssp             ECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC----------------
T ss_pred             ecCCCC-cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee----------------
Confidence            455555 567778888776666     889999999998887 664    47888887665432                


Q ss_pred             EEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEE--c--CCEEEEE----------
Q 016134          228 AGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLC--W--DQFLLSC----------  291 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~----------  291 (394)
                           ++...+..+.|+  ++.|+.++.++.|++||+.+++....+..+...+....+  +  +.+++..          
T Consensus        78 -----~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  152 (388)
T 3pe7_A           78 -----GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPL  152 (388)
T ss_dssp             -----SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred             -----CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccc
Confidence                 222222234565  678999998999999999999877766666555544443  3  5666532          


Q ss_pred             ------------eCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC-CCCcEEEEEeC------CCeEEEEECCCC
Q 016134          292 ------------SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICACN------DNTVHLYELPSF  352 (394)
Q Consensus       292 ------------s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~------dg~I~iwd~~~~  352 (394)
                                  ..+..|.+||+.+++... +..+...  .  ....|+| +|+ .|+....      ...|.++|+...
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~--~--~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          153 TDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQW--L--GHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             CSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSC--E--EEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             cccchhhhhhccCCcceEEEEECCCCceEE-eecCCcc--c--cccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCC
Confidence                        234689999998775433 3333222  2  2334799 998 5655544      337888888765


Q ss_pred             ceeEEEecC--CcEEEEEECCCC-EEEEEe-CCC----eEEEEeCCCC
Q 016134          353 MERGRIFSK--HEVRVIEIGPDK-LFFTGD-GAG----MLGVWKLLAK  392 (394)
Q Consensus       353 ~~~~~~~~~--~~v~~l~~sp~~-~l~tgs-~Dg----~I~vWd~~~~  392 (394)
                      .........  ..+..++|+||| .|+..+ .++    .|.+||+.+.
T Consensus       227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            433222222  247889999999 554433 222    3999998765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.34  E-value=2e-10  Score=102.86  Aligned_cols=231  Identities=10%  Similarity=0.017  Sum_probs=143.8

Q ss_pred             eeeccccccccccC-CCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcE
Q 016134          130 KKTTLKNVCCHWLL-GNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE  206 (394)
Q Consensus       130 ~~~~~~~~~~~~~~-~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~  206 (394)
                      ..++ +.+.+...+ +..    .++.|.+|+..+. ........+...+.+|+++++++++++.. ++.|  ||......
T Consensus        27 ~~i~-~~~~g~l~v~~~~----~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           27 SGVA-VDSAGNVYVTSEG----MYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             EEEE-ECTTCCEEEEECS----SSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             cceE-ECCCCCEEEEccC----CCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            3444 556555333 222    2348899987654 22222233446788999999999666665 6664  66655443


Q ss_pred             EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134          207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  284 (394)
                      ..+..                     .....+..++++  ++++++...++.|.+||..+.............+..++++
T Consensus       100 ~~~~~---------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~  158 (270)
T 1rwi_B          100 TVLPF---------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  158 (270)
T ss_dssp             EECCC---------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC
T ss_pred             eeeec---------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe
Confidence            32210                     112456777776  4556666678899999876554433222333467788887


Q ss_pred             --CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-C
Q 016134          285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-K  361 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~  361 (394)
                        ++++++...++.|.+||..............  ....  .++++++|. ++++...++.|.+|+............ .
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~--~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~  233 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI--TAPW--GIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGL  233 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC--CSEE--EEEECTTCC-EEEEETTTSCEEEECTTCSCCEECCCCSC
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecccCC--CCce--EEEECCCCC-EEEEECCCCcEEEEcCCCCcceeeccCCC
Confidence              6666666667899999987654332211111  2222  334688986 888777788999999876543322111 2


Q ss_pred             CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          362 HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       362 ~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ..+.++++++++ ++++...++.|+++++..+.
T Consensus       234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            468999999999 88888899999999988754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.34  E-value=9.3e-10  Score=100.28  Aligned_cols=227  Identities=11%  Similarity=0.025  Sum_probs=143.3

Q ss_pred             ceeeecccccccc-ccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          128 TSKKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       128 ~v~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      ....+. |.+.+. .+.+....+    .|+.|+..++   ...+..+...+.+++++++++++++...++.  +||..++
T Consensus        29 ~~eg~~-~d~~g~~l~~~~~~~~----~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           29 WTEGPV-YVPARSAVIFSDVRQN----RTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             SEEEEE-EEGGGTEEEEEEGGGT----EEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             cccCCe-EeCCCCEEEEEeCCCC----EEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            445666 888887 444333333    8999999876   5566677888999999999998887776666  4887777


Q ss_pred             cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEE----Ee-------------CCCeEEEEeCCCC
Q 016134          205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCS----GS-------------MDNTIRVWELDTL  265 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~s----gs-------------~Dg~V~iwd~~~~  265 (394)
                      +...+.....                 ......+..++++  ++++++    |+             ..+.|..+|.. +
T Consensus       101 ~~~~~~~~~~-----------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (296)
T 3e5z_A          101 EWESIADSFE-----------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G  162 (296)
T ss_dssp             CEEEEECEET-----------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred             cEEEEeeccC-----------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence            6543211100                 0111234455665  555665    32             13456666655 4


Q ss_pred             ceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeC-CCce---eeEeecccCCcceEEEEeeECCCCCcEEEEEe
Q 016134          266 EPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFAT-GRGN---LEAAYTHKEDNGVLALGGLNDPDGKPVLICAC  339 (394)
Q Consensus       266 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs  339 (394)
                      + +..+..+...+..++++  ++.|++.+.++.|.+||+. +++.   ...+.........+    +++++|. ++++. 
T Consensus       163 ~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i----~~d~~G~-l~v~~-  235 (296)
T 3e5z_A          163 T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL----RVDAGGL-IWASA-  235 (296)
T ss_dssp             C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE----EEBTTSC-EEEEE-
T ss_pred             C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE----EECCCCC-EEEEc-
Confidence            4 34445566677889998  6777777778999999997 3332   12221111111222    3589998 66655 


Q ss_pred             CCCeEEEEECCCCceeEEEecCCcEEEEEE-CCCC-EEEEEeCCCeEEEEeCC
Q 016134          340 NDNTVHLYELPSFMERGRIFSKHEVRVIEI-GPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       340 ~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~-sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                       ++.|.+||.. ++.+..+.....+++++| .|++ .|+.++.++ +.-++..
T Consensus       236 -~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             -CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence             7899999987 666666655333899999 5887 777777764 4344443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.33  E-value=1.9e-10  Score=106.94  Aligned_cols=263  Identities=8%  Similarity=-0.052  Sum_probs=162.9

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEE
Q 016134           90 GSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAK  169 (394)
Q Consensus        90 ~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~  169 (394)
                      ++.+.++.++|.+++.+......    ....-..|  .....+. +.....|+++. .    ++.|.+||..++ +.+.+
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~----~~n~~~lg--~~~~~i~-~~~~~lyv~~~-~----~~~v~viD~~t~-~~~~~   79 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFY----RANGFKLG--DVAQSMV-IRDGIGWIVVN-N----SHVIFAIDINTF-KEVGR   79 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHH----HHHSSCCB--SCEEEEE-EETTEEEEEEG-G----GTEEEEEETTTC-CEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHh----hhcCcccC--ccceEEE-EECCEEEEEEc-C----CCEEEEEECccc-EEEEE
Confidence            45588999999998876431100    00000111  1233344 33444454432 2    348999999887 66666


Q ss_pred             ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCC
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRS  246 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~  246 (394)
                      +. .......|+++++++.+++...++.  +||.++++... +....                 ..++......+++.++
T Consensus        80 i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-----------------~~~~~~~p~~i~~~~~  141 (328)
T 3dsm_A           80 IT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPD-----------------MDMESGSTEQMVQYGK  141 (328)
T ss_dssp             EE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT-----------------CCTTTCBCCCEEEETT
T ss_pred             cC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC-----------------ccccCCCcceEEEECC
Confidence            64 3467899999998855455446776  58888887653 21110                 0011113334455666


Q ss_pred             eEEEEe--CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC----------CcEEEEEeCCCceeeEee
Q 016134          247 RLCSGS--MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD----------HTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       247 ~l~sgs--~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D----------g~i~vwd~~~~~~~~~~~  312 (394)
                      .|+++.  .++.|.++|+++++.+.++... .....+.++  +++++++..+          +.|.++|..+.+....+.
T Consensus       142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          142 YVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             EEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            666655  4899999999999988887643 345667776  5555555444          789999998877665554


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE--ec-CCcEEEEEECCC-C-EEEEE----eCCCe
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI--FS-KHEVRVIEIGPD-K-LFFTG----DGAGM  383 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~-~~~v~~l~~sp~-~-~l~tg----s~Dg~  383 (394)
                      .... ....  .++++|+++ .|.++..  .|.+||..+++.....  .. ......++++|+ + ++++.    ..++.
T Consensus       221 ~~~g-~~p~--~la~~~d~~-~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~  294 (328)
T 3dsm_A          221 FKLG-DWPS--EVQLNGTRD-TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI  294 (328)
T ss_dssp             CCTT-CCCE--EEEECTTSC-EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred             cCCC-CCce--eEEEecCCC-EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence            3211 1222  234699988 5555543  8999999887653211  11 356899999995 4 55665    57889


Q ss_pred             EEEEeCC
Q 016134          384 LGVWKLL  390 (394)
Q Consensus       384 I~vWd~~  390 (394)
                      |.+||..
T Consensus       295 V~v~d~~  301 (328)
T 3dsm_A          295 VYRYSPQ  301 (328)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            9999976

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=1.3e-09  Score=98.76  Aligned_cols=197  Identities=10%  Similarity=-0.012  Sum_probs=136.0

Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccC-CCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHE-KAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE  224 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~  224 (394)
                      ++.++.|.+||.+++ +.+.++..+. ..+.++++.|+|++|++  .++.  .||. +++.+ .+...            
T Consensus        11 ~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~------------   74 (276)
T 3no2_A           11 GSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP------------   74 (276)
T ss_dssp             CTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC------------
T ss_pred             eCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC------------
Confidence            455669999999888 7788888776 57899999999999993  3444  4776 56554 22211            


Q ss_pred             EEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCceeEEEcC------CCCCcEEEEEc--CCEEEEEeC
Q 016134          225 MLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPVMTLND------HTDAPMSLLCW--DQFLLSCSL  293 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~s~  293 (394)
                               ....+.++.+.  ++.+++.+. ++.|..+|. +++.+.++..      +......+.+.  ++++++...
T Consensus        75 ---------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           75 ---------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             ---------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred             ---------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence                     11234444443  677777776 777877886 6777766642      11123333344  889999999


Q ss_pred             CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-------CcEEE
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-------HEVRV  366 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------~~v~~  366 (394)
                      ++.|..||.. ++.+..+...... ...    ...+++. +++++..++.|..+|..+++.+.++...       ..+..
T Consensus       145 ~~~v~~~d~~-G~~~w~~~~~~~~-~~~----~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          145 TSEVREIAPN-GQLLNSVKLSGTP-FSS----AFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             TTEEEEECTT-SCEEEEEECSSCC-CEE----EECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred             CCEEEEECCC-CCEEEEEECCCCc-cce----eEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence            9999999987 7777666543222 222    2478888 8888888889999999999998888641       12788


Q ss_pred             EEECCCC-EEEEE
Q 016134          367 IEIGPDK-LFFTG  378 (394)
Q Consensus       367 l~~sp~~-~l~tg  378 (394)
                      ++..++| ++++.
T Consensus       218 ~~~~~~G~i~v~~  230 (276)
T 3no2_A          218 LFPLQNGGLYICN  230 (276)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             ceEcCCCCEEEEe
Confidence            9999999 55555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.33  E-value=4.3e-11  Score=113.22  Aligned_cols=248  Identities=12%  Similarity=-0.035  Sum_probs=143.9

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE  206 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~  206 (394)
                      +..++ ++|++.+++..... +....|.+||+.++ +......++......+.|+||+++|+.++.++.  +||+.+++.
T Consensus        38 ~~~~~-~SpdG~~l~~~~~~-~g~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKC-FTQDGKKLLFAGDF-DGNRNYYLLNLETQ-QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCC-BCTTSCEEEEEECT-TSSCEEEEEETTTT-EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCc-CCCCCCEEEEEEec-CCCceEEEEECCCC-cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            44455 99999988755443 23347889998876 444333333333334889999999999998887  588888776


Q ss_pred             EEecC-CCCcEE---EEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEE-----eCCCeEEEEeCCCCceeEEEcCCC
Q 016134          207 FSLDG-PVGEVY---SMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSG-----SMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       207 ~~~~~-~~~~v~---~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sg-----s~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      ..+.. +.....   .+++.........      ....+.|+  ++.++..     ..+..|.+||+.+++..... .+.
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~  187 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGI------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT  187 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEE------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred             EEEEecccccCCCCCEEEeccCCccccc------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence            54332 222111   1111111000000      00001222  3344332     45678999999988765544 456


Q ss_pred             CCcEEEEEc---CCEEEEEeCC------CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----
Q 016134          276 DAPMSLLCW---DQFLLSCSLD------HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----  341 (394)
Q Consensus       276 ~~v~~l~~~---~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----  341 (394)
                      ..+..+.|+   +..|+..+.+      ..|.+||+...+. ..+..+..  ........|+|+|+. |+..+.+     
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~--~~~~~~~~~spdg~~-l~~~~~~~~~~~  263 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAE--GESCTHEFWIPDGSA-MAYVSYFKGQTD  263 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCT--TEEEEEEEECTTSSC-EEEEEEETTTCC
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCC--CccccceEECCCCCE-EEEEecCCCCcc
Confidence            678888886   3456665543      3688888765432 22222111  112223457999994 4444333     


Q ss_pred             CeEEEEECCCCceeEEEecCCcEEEEEECC-CC-EEEEEe----------------CCCeEEEEeCCCC
Q 016134          342 NTVHLYELPSFMERGRIFSKHEVRVIEIGP-DK-LFFTGD----------------GAGMLGVWKLLAK  392 (394)
Q Consensus       342 g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-~~-~l~tgs----------------~Dg~I~vWd~~~~  392 (394)
                      +.|++||+.+++........ ... +.|+| ++ +|++++                .+..|.+||+.+.
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             ceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            45999999887654333222 233 89999 99 666654                3478999998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.33  E-value=2.1e-09  Score=99.49  Aligned_cols=227  Identities=10%  Similarity=-0.044  Sum_probs=143.9

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcE
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE  206 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~  206 (394)
                      +.++. +++....++....+    +.++.|.   + +....+..+...+.+++|++++++++++..++.|  ||.++++.
T Consensus         8 ~~~~~-~~~~~~~~~~~~~~----~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            8 LPTLF-YSGKSNSAVPIISE----SELQTIT---A-EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCBCC-SCGGGGCSSCCCCG----GGSCEEE---C-EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             cceee-ecCCccceeEEeec----ccCcccc---c-ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence            34444 66666666555333    3677782   2 5567777788889999999999988888888874  77777765


Q ss_pred             EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCC----CeEEEEeCCCCceeEEEc--CCCCCc
Q 016134          207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMD----NTIRVWELDTLEPVMTLN--DHTDAP  278 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~D----g~V~iwd~~~~~~~~~~~--~h~~~v  278 (394)
                      ..+..                     .+...+.+++++  ++++++...+    +.|.+||.++++....+.  .+...+
T Consensus        79 ~~~~~---------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           79 KRPFV---------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             EEEEE---------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             EEEee---------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            43210                     223456777775  4555555555    689999998876553443  244568


Q ss_pred             EEEEEc--CCEEEEEeC------CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC
Q 016134          279 MSLLCW--DQFLLSCSL------DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP  350 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~  350 (394)
                      ..+.++  +.++++...      .+.|..+|...++. ..+.....  ...  ...++|+++.++++...++.|.+||+.
T Consensus       138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~--~~~--~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNIS--VAN--GIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEES--SEE--EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCC--ccc--ceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            888888  566665543      24455555443332 22222111  122  234699998455666678899999996


Q ss_pred             C-CceeEEE----e----cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          351 S-FMERGRI----F----SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       351 ~-~~~~~~~----~----~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      + +.....+    .    ....+..+++++++ ++++...++.|.+|+.+
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            4 3322111    1    12368889999999 66666678899999874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.33  E-value=9.6e-11  Score=120.15  Aligned_cols=243  Identities=7%  Similarity=-0.078  Sum_probs=152.0

Q ss_pred             CCCCccceeeeccccccccccCCCee-cCCCCCeEEEEEcCCCceEEEEecccCCCe--EEEEecCCCCEEEEEeCCCc-
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCV-RGDECRFLHSWFCGEGLTMLAKLEGHEKAV--SGIALPLRSDKLFSGSRDGT-  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~-~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V--~~l~~s~~~~~l~sgs~Dg~-  197 (394)
                      ..++...+..+. ++|++.++|-... +|+.+..|++||+.++.. +.  ..+...+  ..++|+|||+.|+.++.|.. 
T Consensus       116 a~~~~~~~~~~~-~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~-~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~  191 (695)
T 2bkl_A          116 SKDGTVSLGTWA-VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW-SK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDP  191 (695)
T ss_dssp             SSSSCEEEEEEE-ECTTSSEEEEEEEETTCSCCEEEEEETTTCCB-CS--SCCBSCCTTCCCEECTTSSEEEEEECCCCT
T ss_pred             ccCCCEEEEEEE-ECCCCCEEEEEECCCCCceEEEEEEECCCCCC-cC--CcccCcccccceEEecCCCEEEEEEecCCC
Confidence            345666788888 9999999885444 566678999999988732 20  1222223  68999999999999988653 


Q ss_pred             --------------eeecCCCcE--EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCC----
Q 016134          198 --------------AWNIESSAE--FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDN----  255 (394)
Q Consensus       198 --------------vWd~~~~~~--~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg----  255 (394)
                                    +|++.+++.  ..+.                   ....|...+..+.|+  +++|+..+.++    
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-------------------~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  252 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVH-------------------ERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN  252 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEE-------------------CCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEE-------------------ecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence                          477776651  1110                   111344566677776  56676666555    


Q ss_pred             eEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEe---CCCcEEEEEeCCCce--eeEeecccCCcceEEEEeeECC
Q 016134          256 TIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCS---LDHTIKVWFATGRGN--LEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       256 ~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s---~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      .|.+||..+++ ...+..+...+....+. +++++...   .++.|.+||+.+++.  ...+..+.....+..+  .++ 
T Consensus       253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~--~~~-  328 (695)
T 2bkl_A          253 DVYWKRPGEKD-FRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSV--SIV-  328 (695)
T ss_dssp             EEEEECTTCSS-CEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE--EEE-
T ss_pred             EEEEEcCCCCc-eEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE--EEE-
Confidence            67777765554 34455555566666555 55444433   257899999876543  2333333222222222  234 


Q ss_pred             CCCcEEEEEeCCCeEEEEECC-CCceeEEEec--CCcEEEEEECCCC-EEE-EEe---CCCeEEEEeCCCC
Q 016134          330 DGKPVLICACNDNTVHLYELP-SFMERGRIFS--KHEVRVIEIGPDK-LFF-TGD---GAGMLGVWKLLAK  392 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~--~~~v~~l~~sp~~-~l~-tgs---~Dg~I~vWd~~~~  392 (394)
                      ++. ++++...|+..+||.+. +++....+..  ...+..++++|++ .|+ +.+   ..++|.+||+.+.
T Consensus       329 ~~~-lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          329 GGH-LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             TTE-EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             CCE-EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            444 88889999998888665 3444444432  4567888999988 444 332   3468999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.32  E-value=1.2e-10  Score=119.49  Aligned_cols=241  Identities=9%  Similarity=-0.034  Sum_probs=149.0

Q ss_pred             CCCcccccccccccc-----cCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec
Q 016134           74 SPPSYNRLKNNLWVS-----SGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~-----s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      ...+|++  ++.+|+     +|+.+.+|++||++++.... ..         ...+.+  ...+. |+|++..++....+
T Consensus       124 ~~~~~SP--DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~---------~~~~~~--~~~~~-wspDg~~l~~~~~d  188 (695)
T 2bkl_A          124 GTWAVSW--DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VD---------VIEGGK--YATPK-WTPDSKGFYYEWLP  188 (695)
T ss_dssp             EEEEECT--TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SC---------CBSCCT--TCCCE-ECTTSSEEEEEECC
T ss_pred             EEEEECC--CCCEEEEEECCCCCceEEEEEEECCCCCCcC-Cc---------ccCccc--ccceE-EecCCCEEEEEEec
Confidence            3456676  888888     88888999999999987531 00         001110  13455 99999888776655


Q ss_pred             CC---------CCCeEEEEEcCCCc---eEEEEecccCCCeEEEEecCCCCEEEEEeCCC----cee--ecCCCcEEEec
Q 016134          149 GD---------ECRFLHSWFCGEGL---TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG----TAW--NIESSAEFSLD  210 (394)
Q Consensus       149 g~---------~~~~i~iWd~~~~~---~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg----~vW--d~~~~~~~~~~  210 (394)
                      ..         ....|++|++.++.   .++.....|...+..+.|+|||++|+..+.++    .||  +..+++...+.
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~  268 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV  268 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee
Confidence            42         23459999998764   35555556777899999999999999888766    354  43333333322


Q ss_pred             CCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEe---CCCeEEEEeCCCCce--eEEEcCC--CCCcEEEE
Q 016134          211 GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGS---MDNTIRVWELDTLEP--VMTLNDH--TDAPMSLL  282 (394)
Q Consensus       211 ~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs---~Dg~V~iwd~~~~~~--~~~~~~h--~~~v~~l~  282 (394)
                      .+                      ...+....+. +++++...   .++.|.+||+.+++.  ...+..+  ...+..+.
T Consensus       269 ~~----------------------~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~  326 (695)
T 2bkl_A          269 KG----------------------VGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS  326 (695)
T ss_dssp             EC----------------------SSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE
T ss_pred             cC----------------------CCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE
Confidence            21                      1222233333 44333333   258999999987653  2344333  34577778


Q ss_pred             Ec-CCEEEEEeCCCcEEEEEeC-CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC---CCeEEEEECCCCce
Q 016134          283 CW-DQFLLSCSLDHTIKVWFAT-GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN---DNTVHLYELPSFME  354 (394)
Q Consensus       283 ~~-~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~---dg~I~iwd~~~~~~  354 (394)
                      +. +.++++...|+..+||.+. .++....+..+ ....+  ..+.++|+++.++++.+.   .++|++||+.+++.
T Consensus       327 ~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~-~~~~v--~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          327 IVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP-GVGAA--SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EETTEEEEEEEETTEEEEEEEETTCCEEEECCCS-SSSEE--CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EECCEEEEEEEECCEEEEEEEeCCCCeeEEecCC-CCeEE--EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            77 5677888889998888765 34434333222 11122  223457888745444432   46899999988764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.31  E-value=2.5e-09  Score=96.77  Aligned_cols=198  Identities=12%  Similarity=0.092  Sum_probs=134.5

Q ss_pred             cccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe-c-CC
Q 016134          171 EGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV-G-RS  246 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~-~-~~  246 (394)
                      .+|-..+.+|+++++++++++...++.  +||.+ ++.+......+               ...++...+..+++ . ..
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~---------------~~~~~~~~p~~i~~~~~~g   89 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG---------------KRDSQLLYPNRVAVVRNSG   89 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS---------------SSTTCBSSEEEEEEETTTT
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC---------------CCcccccCceEEEEEcCCC
Confidence            456678999999999998888888877  48876 43332111100               11145567788888 3 34


Q ss_pred             eEEEEe-C-CCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          247 RLCSGS-M-DNTIRVWELDTLEPVMTLND-HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       247 ~l~sgs-~-Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      .|+.+. . ++.|.+|| .+++.+..+.. +...+..++++  ++++++...++.|.+||.. ++.+..+..........
T Consensus        90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A           90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence            444444 3 89999999 56777777643 44578899987  6677777778999999964 44444433211112222


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC---CcEEEEEECCCC-EEEEEeCCC-eEEEEeCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK---HEVRVIEIGPDK-LFFTGDGAG-MLGVWKLL  390 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---~~v~~l~~sp~~-~l~tgs~Dg-~I~vWd~~  390 (394)
                        .+++++++. ++++...++.|++||.. ++.+..+...   ..+..+++++++ ++++...++ .|.+|+..
T Consensus       168 --~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          168 --GVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             --EEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             --EEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence              334689988 88888889999999974 4555555432   468999999999 777777775 99999854

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.31  E-value=1.9e-09  Score=100.08  Aligned_cols=214  Identities=7%  Similarity=-0.046  Sum_probs=144.5

Q ss_pred             ecCCCCCeEEEEEcCCCceEEEEec------ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEE
Q 016134          147 VRGDECRFLHSWFCGEGLTMLAKLE------GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYS  218 (394)
Q Consensus       147 ~~g~~~~~i~iWd~~~~~~~~~~l~------~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~  218 (394)
                      .-|..++.|.++|.+++ +....+.      ........+++. +++++++...++.  +||.++++.+....       
T Consensus        11 ~~g~~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-------   81 (328)
T 3dsm_A           11 NFQYSNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-------   81 (328)
T ss_dssp             CTTSCCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-------
T ss_pred             CCCCCCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-------
Confidence            33455779999999887 4444331      122456778874 3445555555566  69999888763211       


Q ss_pred             EEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEe-CCCeEEEEeCCCCceeEEEcCCC-----CCcEEEEEcCCEEEEE
Q 016134          219 MVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGS-MDNTIRVWELDTLEPVMTLNDHT-----DAPMSLLCWDQFLLSC  291 (394)
Q Consensus       219 l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~  291 (394)
                                     .......++++ +..++++. .++.|.+||+.+++....+....     .....+++.+..|+.+
T Consensus        82 ---------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~  146 (328)
T 3dsm_A           82 ---------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVN  146 (328)
T ss_dssp             ---------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEE
T ss_pred             ---------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEE
Confidence                           12345566663 34555555 78999999999999887776433     1455666676666666


Q ss_pred             e--CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC----------CeEEEEECCCCceeEEEe
Q 016134          292 S--LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND----------NTVHLYELPSFMERGRIF  359 (394)
Q Consensus       292 s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d----------g~I~iwd~~~~~~~~~~~  359 (394)
                      .  .++.|.++|+.+++.+..+.....+ ..+    .++|+|+ ++++...+          +.|.++|..+++....+.
T Consensus       147 ~~~~~~~v~viD~~t~~~~~~i~~g~~p-~~i----~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          147 CWSYQNRILKIDTETDKVVDELTIGIQP-TSL----VMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             ECTTCCEEEEEETTTTEEEEEEECSSCB-CCC----EECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCEEEEEECCCCeEEEEEEcCCCc-cce----EEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            5  4889999999988777666543322 222    3589998 66665544          789999999988776665


Q ss_pred             c--CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          360 S--KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       360 ~--~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .  ......++++|++ .|+.+..  .|.+||+.+.
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~  254 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD  254 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred             cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence            4  3468999999988 6666654  8999998653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.29  E-value=1.2e-10  Score=110.00  Aligned_cols=178  Identities=7%  Similarity=0.006  Sum_probs=128.7

Q ss_pred             CeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCC
Q 016134          176 AVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD  254 (394)
Q Consensus       176 ~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D  254 (394)
                      .++.|++++...+|++|+.++. +|+++........... .     +.+..++     .+.. |..|+|+++.|+++ .+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~-~-----~~~~~~~-----~lp~-V~~l~fd~~~L~v~-~~  105 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDST-P-----LTFKWEK-----EIPD-VIFVCFHGDQVLVS-TR  105 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSC-C-----CCCSEEE-----ECTT-EEEEEEETTEEEEE-ES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccc-c-----ccceEEe-----eCCC-eeEEEECCCEEEEE-cC
Confidence            6899999999999999999987 6886543310000000 0     1111111     3455 89999977888888 88


Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcE
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPV  334 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  334 (394)
                      +.|++||+++......+..|...+.++.+....++++..||.|.+||+.++....    ..  ..+.  +++|+|+|   
T Consensus       106 ~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~--~~Vs--~v~WSpkG---  174 (388)
T 1xip_A          106 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LA--QNVT--SFDVTNSQ---  174 (388)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EE--ESEE--EEEECSSE---
T ss_pred             CcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----cc--CCce--EEEEcCCc---
Confidence            9999999988776666777888888888876569999999999999998766532    11  1233  34579998   


Q ss_pred             EEEEeCCCeEEEEECCCCce--eEEEe----------cCCcEEEEEECCCC-EEEE
Q 016134          335 LICACNDNTVHLYELPSFME--RGRIF----------SKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       335 l~sgs~dg~I~iwd~~~~~~--~~~~~----------~~~~v~~l~~sp~~-~l~t  377 (394)
                      ++.|..||++++|+......  ...+.          +...|.+|.|.+++ ++++
T Consensus       175 ~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            46688899999999887765  55561          35679999999998 4444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.29  E-value=4e-10  Score=104.85  Aligned_cols=214  Identities=9%  Similarity=0.054  Sum_probs=127.5

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC---c----eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG---T----AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~----vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      +..|.+||+.++ +. ..+    ..+..++|+|||++|+.++.++   .    +|++.+++...+..... +..+.|+|+
T Consensus        42 ~~~l~~~d~~~~-~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd  114 (347)
T 2gop_A           42 ENTIVIENLKNN-AR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED  114 (347)
T ss_dssp             EEEEEEEETTTC-CE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred             cceEEEEeCCCC-ce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence            457999999876 32 233    5688999999999999887653   2    46777877665543333 777788776


Q ss_pred             --EEEEEecCCCC----CCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC
Q 016134          225 --MLFAGAQDGHT----RPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD  294 (394)
Q Consensus       225 --~l~~~~~~~h~----~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D  294 (394)
                        .|+....+...    ..+..+.|.  +..+ .......|.+||+.+++.+..+.. . .+..+.|+  + +++++..+
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF-FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC----------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCccc-ccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence              44444322100    001111111  1101 011245799999998877455554 3 78888888  5 66666554


Q ss_pred             C-------cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEEEe
Q 016134          295 H-------TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGRIF  359 (394)
Q Consensus       295 g-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~  359 (394)
                      .       ...||.+.++ ....+..+   .....    ++|+|+ .|+..+.+        ..|.+||  +++.. .+.
T Consensus       191 ~~~~~~~~~~~l~~~d~~-~~~~l~~~---~~~~~----~spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~  258 (347)
T 2gop_A          191 EIIPQYFKFWDIYIWEDG-KEEKMFEK---VSFYA----VDSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKEVM-GIL  258 (347)
T ss_dssp             CSSCCSSCCEEEEEEETT-EEEEEEEE---ESEEE----EEECSS-CEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESS
T ss_pred             cccccccccccEEEeCCC-ceEEeccC---cceee----ECCCCC-EEEEEEccccCCccccceEEEEC--CCceE-ecc
Confidence            2       4455555433 33333332   22222    288998 45544433        4688888  44432 332


Q ss_pred             c--CCcEEE-EEECCCCEEEEEeCCCeEEEEeCC
Q 016134          360 S--KHEVRV-IEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       360 ~--~~~v~~-l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      .  ...+.. +.|+ ++++++++.++.++|| +.
T Consensus       259 ~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          259 DEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             TTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EE
T ss_pred             ccCCcccCCccEEc-CcEEEEEecCCcEEEE-Ec
Confidence            2  446776 8999 7788888999999999 76

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=9.4e-10  Score=102.14  Aligned_cols=197  Identities=11%  Similarity=0.047  Sum_probs=132.3

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCc--------------------------eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGT--------------------------AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~--------------------------vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      -+.|.+|+++|+|+++++...++.                          +||.++++...                   
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-------------------   83 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-------------------   83 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE-------------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe-------------------
Confidence            467999999999999988887742                          24433333321                   


Q ss_pred             EEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-eeEEE---------cCCCCCcEEEEEc---CCEEEEEe
Q 016134          228 AGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-PVMTL---------NDHTDAPMSLLCW---DQFLLSCS  292 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~---~~~l~s~s  292 (394)
                       ....++......|+++  ++++++...++.|++||..... .+..+         ..+...+..++++   +.++++.+
T Consensus        84 -~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           84 -SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             -EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred             -ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence             1112455677888887  6778888889999999986542 56666         3445578899997   45666665


Q ss_pred             -CCCcEEEEEeCCCceeeEeecccCC------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CC
Q 016134          293 -LDHTIKVWFATGRGNLEAAYTHKED------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KH  362 (394)
Q Consensus       293 -~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~  362 (394)
                       .++.|++|| .+++.+..+......      .......++++|++..++++...++.|++||..+++.+..+..   ..
T Consensus       163 ~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~  241 (329)
T 3fvz_A          163 YCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR  241 (329)
T ss_dssp             SSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred             CCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence             589999999 455555544322111      0011223346888443888888899999999998888877753   45


Q ss_pred             cEEEEEECCCC-EEEEEe-------CCCeEEEEeCCCC
Q 016134          363 EVRVIEIGPDK-LFFTGD-------GAGMLGVWKLLAK  392 (394)
Q Consensus       363 ~v~~l~~sp~~-~l~tgs-------~Dg~I~vWd~~~~  392 (394)
                      .+..++++| + .+++.+       .+..|++|++.+.
T Consensus       242 ~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          242 NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence            688999999 5 333332       3458999997653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.26  E-value=7.8e-09  Score=103.05  Aligned_cols=282  Identities=10%  Similarity=0.038  Sum_probs=178.1

Q ss_pred             cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcC--C
Q 016134           85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCG--E  162 (394)
Q Consensus        85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~--~  162 (394)
                      ..+++.+++.++.++|.+++.....           ...|.  .+..+. ++|++.++..+.    .++.|.+||+.  +
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~-----------i~~g~--~p~~v~-~SpDGr~lyv~~----~dg~V~viD~~~~t  229 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTV-----------LDTGY--AVHISR-LSASGRYLFVIG----RDGKVNMIDLWMKE  229 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-----------EECSS--CEEEEE-ECTTSCEEEEEE----TTSEEEEEETTSSS
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEE-----------EeCCC--CccceE-ECCCCCEEEEEc----CCCeEEEEECCCCC
Confidence            3456677889999999998875431           11222  344666 999999877554    34599999995  5


Q ss_pred             CceEEEEecccCCCeEEEEec----CCCCEEEEEeCCC-c--eeecCCCcEEEecC------------CCCcEEEEEEcC
Q 016134          163 GLTMLAKLEGHEKAVSGIALP----LRSDKLFSGSRDG-T--AWNIESSAEFSLDG------------PVGEVYSMVVAN  223 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s----~~~~~l~sgs~Dg-~--vWd~~~~~~~~~~~------------~~~~v~~l~~~~  223 (394)
                      . +.+.++.... ....++|+    |||++++++.... .  |+|..+.+.+....            ....+..+..++
T Consensus       230 ~-~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~  307 (567)
T 1qks_A          230 P-TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  307 (567)
T ss_dssp             C-CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             C-cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence            4 6666666533 45789999    6999999887764 3  69998888763211            022466666665


Q ss_pred             C--EEEEEecC--------------------CCCCCEEEEEec--CCeEEEEe-CCCeEEEEeCCCCceeEEEcC-----
Q 016134          224 E--MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSGS-MDNTIRVWELDTLEPVMTLND-----  273 (394)
Q Consensus       224 ~--~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~-----  273 (394)
                      +  .+++...+                    ........+.|+  +.+|+++. .+++|.++|+++++.+..+..     
T Consensus       308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P  387 (567)
T 1qks_A          308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  387 (567)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence            4  22222211                    112234456676  56665554 688999999999998777654     


Q ss_pred             CCCCcEEEEEc---CCEEEEEe-CCCcEEEEEeCC-------CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC--
Q 016134          274 HTDAPMSLLCW---DQFLLSCS-LDHTIKVWFATG-------RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN--  340 (394)
Q Consensus       274 h~~~v~~l~~~---~~~l~s~s-~Dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~--  340 (394)
                      |.+.-..+ ++   +...++.. .+++|.++|...       .+.++.+.....  ..+  .+..+|+++ .|.+...  
T Consensus       388 hpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~--~i~~~p~~~-~l~v~~~~~  461 (567)
T 1qks_A          388 HPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSL--FIKTHPNSQ-YLYVDATLN  461 (567)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCC--CEECCTTCS-EEEEECTTC
T ss_pred             CCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCE--EEEeCCCCC-eEEEecCCC
Confidence            43322222 23   23444443 468999999887       455555554321  111  122489999 4554442  


Q ss_pred             -----CCeEEEEECCCC-----cee-EEEe---------cCCcEEEEEECCCC-EEEEE--e---CCCeEEEEeCCCC
Q 016134          341 -----DNTVHLYELPSF-----MER-GRIF---------SKHEVRVIEIGPDK-LFFTG--D---GAGMLGVWKLLAK  392 (394)
Q Consensus       341 -----dg~I~iwd~~~~-----~~~-~~~~---------~~~~v~~l~~sp~~-~l~tg--s---~Dg~I~vWd~~~~  392 (394)
                           ..+|.++|+.+.     ... ..+.         ....+..+.|+|+| .+..+  +   .++.|.|+|..+.
T Consensus       462 ~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          462 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence                 359999999876     222 2332         14568999999999 44443  2   3789999997763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.24  E-value=1.9e-08  Score=95.15  Aligned_cols=256  Identities=8%  Similarity=-0.100  Sum_probs=157.6

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCceEEE
Q 016134           95 IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGLTMLA  168 (394)
Q Consensus        95 ~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~~~~~  168 (394)
                      ++.++|.+++.....           ...|.. .  .+. ++|++.++.....      .|..+..|.+||..+. +.+.
T Consensus        48 ~v~v~D~~t~~~~~~-----------i~~g~~-p--~i~-~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-~~~~  111 (373)
T 2mad_H           48 QQWVLDAGSGSILGH-----------VNGGFL-P--NPV-AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-LPIA  111 (373)
T ss_pred             EEEEEECCCCeEEEE-----------ecCCCC-C--CeE-ECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-cEEE
Confidence            788899888775421           122221 1  455 9999988765442      2344668999999865 5555


Q ss_pred             Eeccc-------CCCeEEEEecCCCCEEEEEeCC--Cc--eeecCCCcEEEe-cCCCCcEEEEEEcCCEEEEEecCCCCC
Q 016134          169 KLEGH-------EKAVSGIALPLRSDKLFSGSRD--GT--AWNIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDGHTR  236 (394)
Q Consensus       169 ~l~~h-------~~~V~~l~~s~~~~~l~sgs~D--g~--vWd~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~~~h~~  236 (394)
                      ++.--       ...-..++|+|||++|+.+...  ..  ++| ++++.+.. ....                      .
T Consensus       112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----------------------~  168 (373)
T 2mad_H          112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----------------------T  168 (373)
T ss_pred             EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----------------------c
Confidence            44321       1234589999999999988753  43  588 87776532 2111                      1


Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCc-EEEEEc--CCEEEEEeCCCcEEEEEeCCCce-
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN-----DHTDAP-MSLLCW--DQFLLSCSLDHTIKVWFATGRGN-  307 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-----~h~~~v-~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-  307 (394)
                      .+.-....+..+++.+.||.+.++|. +++.+....     ....++ ....+.  +..++..+..+.+.+.|+..... 
T Consensus       169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~  247 (373)
T 2mad_H          169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT  247 (373)
T ss_pred             eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence            11111222456677788999999999 877663322     111121 112222  34444444678999999865432 


Q ss_pred             -eeEeeccc--------CCcceEEEEeeECCCCCcEEEEEe---------CCCeEEEEECCCCceeEEEecCCcEEEEEE
Q 016134          308 -LEAAYTHK--------EDNGVLALGGLNDPDGKPVLICAC---------NDNTVHLYELPSFMERGRIFSKHEVRVIEI  369 (394)
Q Consensus       308 -~~~~~~~~--------~~~~~~~~~~~~s~~g~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~  369 (394)
                       +..+....        .+....  ...++|+++.++++..         .++.|.++|+.+++.+..+........++|
T Consensus       248 v~~~~~~~~~~~~~~~~~p~g~~--~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~  325 (373)
T 2mad_H          248 NKAPIDALSGGRKADTWRPGGWQ--QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV  325 (373)
T ss_pred             EeeeeeecCCcccccceecCceE--eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEE
Confidence             11111100        011111  1235899885555443         136899999999999999987778999999


Q ss_pred             CCCC--EEEEEe-CCCeEEEEeCCCC
Q 016134          370 GPDK--LFFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       370 sp~~--~l~tgs-~Dg~I~vWd~~~~  392 (394)
                      +||+  +++++. .++.|.++|+.+.
T Consensus       326 s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          326 AQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            9998  566666 5899999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.22  E-value=1e-08  Score=102.24  Aligned_cols=214  Identities=14%  Similarity=0.069  Sum_probs=141.5

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecC--CCcEEEecCCCCcEEEEEEcCCEE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIE--SSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~--~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      .++.|.++|..++ +.+.++... ..+..+.|+||+++|++++.|+.  +||+.  +++.+........           
T Consensus       175 ~~~~V~viD~~t~-~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-----------  241 (567)
T 1qks_A          175 DAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-----------  241 (567)
T ss_dssp             TTTEEEEEETTTC-CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-----------
T ss_pred             CCCeEEEEECCCC-eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-----------
Confidence            4559999999887 666666543 35679999999999999999888  58985  6655422111111           


Q ss_pred             EEEecCCCCCCEEEEEec------CCeEEEEe-CCCeEEEEeCCCCceeEEEcCC----------CC-CcEEEEEc---C
Q 016134          227 FAGAQDGHTRPVTCLAVG------RSRLCSGS-MDNTIRVWELDTLEPVMTLNDH----------TD-APMSLLCW---D  285 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~------~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~h----------~~-~v~~l~~~---~  285 (394)
                                 ...++|+      +++++++. .+++|.|+|..+.+.++++...          .. .+..+..+   .
T Consensus       242 -----------P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~  310 (567)
T 1qks_A          242 -----------ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  310 (567)
T ss_dssp             -----------EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             -----------CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence                       2334444      45555554 4699999999999998877532          12 45666666   3


Q ss_pred             CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----C
Q 016134          286 QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----K  361 (394)
Q Consensus       286 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~  361 (394)
                      .+++....+|.|.++|....+.+........ ....  ...|+|++++++++...++.|.++|+.+++.+..+..    .
T Consensus       311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~-~~~~--d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P  387 (567)
T 1qks_A          311 EFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLH--DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  387 (567)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEE--EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             EEEEEecCCCeEEEEecCCCccceeeeeecc-cccc--CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence            4566666789999999876543332221111 1111  3347999996667777789999999999987766654    2


Q ss_pred             CcEEEEE-ECCCC--EEEEEe-CCCeEEEEeCCC
Q 016134          362 HEVRVIE-IGPDK--LFFTGD-GAGMLGVWKLLA  391 (394)
Q Consensus       362 ~~v~~l~-~sp~~--~l~tgs-~Dg~I~vWd~~~  391 (394)
                      ++-..+. ++|++  .++++. .++.|.++|..+
T Consensus       388 hpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          388 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            2111222 57875  445553 568999999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.20  E-value=2e-09  Score=97.58  Aligned_cols=240  Identities=9%  Similarity=0.019  Sum_probs=154.7

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      |...|+++|.|+.+.+||.++++..-.           +..+....+..+. ..|.+..++  +.    +..|+.||. +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~-----------~~~~~~~~~~~~~-~~pdG~ilv--s~----~~~V~~~d~-~   64 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWE-----------YPLEKGWECNSVA-ATKAGEILF--SY----SKGAKMITR-D   64 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEE-----------EECCTTCCCCEEE-ECTTSCEEE--EC----BSEEEEECT-T
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEE-----------eCCCccCCCcCeE-ECCCCCEEE--eC----CCCEEEECC-C
Confidence            677889999999999999998886411           1111112456666 788888877  22    347999998 5


Q ss_pred             CceEEEEeccc-CCCeEEEEecCCCCEEEEEeC-CCceeecC-CCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          163 GLTMLAKLEGH-EKAVSGIALPLRSDKLFSGSR-DGTAWNIE-SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       163 ~~~~~~~l~~h-~~~V~~l~~s~~~~~l~sgs~-Dg~vWd~~-~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      + +.+..+..+ ...+.++.+.++|+.|++.+. ++.|+-++ +++.+...         .+..      ....+.....
T Consensus        65 G-~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~---------~~~~------~~~~~~~~~~  128 (276)
T 3no2_A           65 G-RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKT---------EFET------GIERPHAQFR  128 (276)
T ss_dssp             S-CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE---------EECC------SCSSGGGSCS
T ss_pred             C-CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE---------eccC------CCCccccccc
Confidence            6 677777765 357899999999999999887 66654332 44443211         0000      0001111122


Q ss_pred             EEEe--cCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          240 CLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       240 ~l~~--~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      .+.+  +++++++...++.|.+||.+ ++.+.++... ..+.++...  ++.++++..+++|..+|..+++.+-.+....
T Consensus       129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~  206 (276)
T 3no2_A          129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND  206 (276)
T ss_dssp             CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred             CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence            2233  47889999999999999998 9999988765 344455555  7788888888899999998888877776432


Q ss_pred             CC--cceEEEEeeECCCCCcEEEEEeCC--------CeEEEEEC-CCCceeEEEec
Q 016134          316 ED--NGVLALGGLNDPDGKPVLICACND--------NTVHLYEL-PSFMERGRIFS  360 (394)
Q Consensus       316 ~~--~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~-~~~~~~~~~~~  360 (394)
                      ..  ...........++|. ++++....        +..+++++ ++++.+-++..
T Consensus       207 ~~~~~l~~~~~~~~~~~G~-i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          207 IEGVQLFFVAQLFPLQNGG-LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             SBSCCCSEEEEEEECTTSC-EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             CCCccccccccceEcCCCC-EEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            11  111122233478888 66665321        23456666 46666666544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.19  E-value=2.1e-07  Score=84.00  Aligned_cols=249  Identities=7%  Similarity=-0.005  Sum_probs=153.3

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCc
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSA  205 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~  205 (394)
                      .+..+. +.+.+....+...    .+.|.+||.. +......+..+...+.+|++++++.++++...++.|  ||.+ ++
T Consensus        16 ~~~~i~-~d~~g~l~v~~~~----~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           16 GPYGIT-VSDKGKVWITQHK----ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             CEEEEE-ECTTSCEEEEETT----TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CccceE-ECCCCCEEEEecC----CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            456666 6666554433221    3479999987 422222333456789999999999988887767765  6654 33


Q ss_pred             EEEe--cCCCCcEEEEEEcCC-EEEEEec-C------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEe
Q 016134          206 EFSL--DGPVGEVYSMVVANE-MLFAGAQ-D------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWE  261 (394)
Q Consensus       206 ~~~~--~~~~~~v~~l~~~~~-~l~~~~~-~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd  261 (394)
                      ...+  ......+..+++.++ .++++.. +                  .+...+..++++  +.++++...++.|.+||
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            3222  224456888888876 4443332 1                  123456777776  45555555678999999


Q ss_pred             CCCCceeEE-EcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          262 LDTLEPVMT-LNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       262 ~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                      . +++.... +......+..++++  +.+.++...++.|.+||. +++.. .+..........  .+.++++|. ++++.
T Consensus       169 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~--~i~~~~~g~-l~v~~  242 (299)
T 2z2n_A          169 E-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPH--AITAGAGID-LWFTE  242 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEE--EEEECSTTC-EEEEE
T ss_pred             C-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCce--eEEECCCCC-EEEec
Confidence            9 6665432 33345567888887  566666556789999998 55432 222111112233  334688988 77766


Q ss_pred             eCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          339 CNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       339 s~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..++.|.+||. ++. +..+..   ...+.++++ +++.|..+...+.|..++..++
T Consensus       243 ~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          243 WGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             TTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             cCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence            67889999998 443 333322   356899999 8884444444667777776553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.18  E-value=2.7e-08  Score=90.87  Aligned_cols=241  Identities=9%  Similarity=0.001  Sum_probs=139.8

Q ss_pred             eeeeccccccccccCC---CeecCCCCCeEEEEEcCCCceEEEEe----cccCCCeEEEEecCC-CCEEEEEeCCCc-ee
Q 016134          129 SKKTTLKNVCCHWLLG---NCVRGDECRFLHSWFCGEGLTMLAKL----EGHEKAVSGIALPLR-SDKLFSGSRDGT-AW  199 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~---~~~~g~~~~~i~iWd~~~~~~~~~~l----~~h~~~V~~l~~s~~-~~~l~sgs~Dg~-vW  199 (394)
                      ...++ +.+.+...++   ...++..++.|.+||..++ +.....    .++...+.+++++++ ++++++...++. +|
T Consensus        20 ~~~~~-~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~   97 (314)
T 1pjx_A           20 AEGPV-FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEE-ECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             ccCce-ECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence            34455 6666654443   0001122348999998666 322221    135678999999999 766666554443 48


Q ss_pred             ecCCCcEEEe-cCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCC---------------CeEEEEe
Q 016134          200 NIESSAEFSL-DGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMD---------------NTIRVWE  261 (394)
Q Consensus       200 d~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~D---------------g~V~iwd  261 (394)
                      |.+ ++...+ .....                 ......+.+++++  ++++++...+               +.|..||
T Consensus        98 d~~-g~~~~~~~~~~~-----------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSE-----------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             ETT-SCEEECCSBCTT-----------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             eCC-CCEEEEEeccCC-----------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence            877 655433 21100                 0112345666665  4455554444               5677777


Q ss_pred             CCCCceeEEEcCCCCCcEEEEEc----C--CEEEEE-eCCCcEEEEEeC-CCcee--eEeecccCCcceEEEEeeECCCC
Q 016134          262 LDTLEPVMTLNDHTDAPMSLLCW----D--QFLLSC-SLDHTIKVWFAT-GRGNL--EAAYTHKEDNGVLALGGLNDPDG  331 (394)
Q Consensus       262 ~~~~~~~~~~~~h~~~v~~l~~~----~--~~l~s~-s~Dg~i~vwd~~-~~~~~--~~~~~~~~~~~~~~~~~~~s~~g  331 (394)
                      .. ++..... .+......++++    .  +.|+.+ ..++.|.+||+. .++..  ..+.............++++++|
T Consensus       160 ~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G  237 (314)
T 1pjx_A          160 TD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             TT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             CC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence            66 5543322 233345677776    3  345444 567899999986 33211  11111111100112234568999


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEE-EEeCCCeEEEEeCCCC
Q 016134          332 KPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFF-TGDGAGMLGVWKLLAK  392 (394)
Q Consensus       332 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~-tgs~Dg~I~vWd~~~~  392 (394)
                      . ++++...++.|.+||..+++.+..+.. ...+.+++++|++ .|+ +...++.|..|++...
T Consensus       238 ~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          238 N-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             C-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             C-EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8 777777788999999987766555544 3679999999998 454 4456689999998754

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.18  E-value=2.8e-09  Score=110.10  Aligned_cols=244  Identities=13%  Similarity=0.028  Sum_probs=146.5

Q ss_pred             CCCccceeeeccccccccccCCCeec-CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----
Q 016134          123 SGDKSTSKKTTLKNVCCHWLLGNCVR-GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----  197 (394)
Q Consensus       123 ~g~~~~v~~~~~~~~~~~~~~~~~~~-g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----  197 (394)
                      .++...+..+. |+|++.+++..... |+....|++||+.++. .+.. ..+...+..++|+|| +.|+.++.|+.    
T Consensus       159 ~~~~~~~~~~~-~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          159 KDGATALDAWA-ASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ----EEEEEEE-ECTTSSEEEEEEEETTCSEEEEEEEETTTCC-EEEE-EEEEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             cCCCEEEEeEE-ECCCCCEEEEEEcCCCCceEEEEEEECCCCC-CCCc-cCCCceeccEEEECC-CEEEEEEecCccccc
Confidence            34444677787 99999999877665 4444689999998873 3322 112223467899999 99988887653    


Q ss_pred             ------------eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCC-----CeEE
Q 016134          198 ------------AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMD-----NTIR  258 (394)
Q Consensus       198 ------------vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~D-----g~V~  258 (394)
                                  +|++.++...                +.++ .....+...+..+.|+  +++|+..+.+     ..|.
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~----------------~~lv-~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSA----------------DQPV-FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGG----------------CEEE-ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             ccccCCCCCEEEEEECCCCchh----------------CEEE-eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence                        3555443310                0000 0111233346677776  5666666644     3899


Q ss_pred             EEeCCCC--ceeEEEcCCCCCcEEEEEc-CCEEEEEeCC----CcEEEEEeCCC-ceeeEeecccCCcceEEEEeeECCC
Q 016134          259 VWELDTL--EPVMTLNDHTDAPMSLLCW-DQFLLSCSLD----HTIKVWFATGR-GNLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       259 iwd~~~~--~~~~~~~~h~~~v~~l~~~-~~~l~s~s~D----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      +||+.++  ++...+..+...+....+. ++.|+..+.+    +.|.+||+.++ .....+..+... ....+  .++ +
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~--~~~-~  373 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESV--GIA-G  373 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEE--EEE-B
T ss_pred             EEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEE--EEE-C
Confidence            9999876  4245565555555544333 7877777653    45999998774 233333333221 12222  233 3


Q ss_pred             CCcEEEEEeCCCeEEEEECC-CCceeEEEec--CCcEEEEEECCCC-EEE-EEe---CCCeEEEEeCCCC
Q 016134          331 GKPVLICACNDNTVHLYELP-SFMERGRIFS--KHEVRVIEIGPDK-LFF-TGD---GAGMLGVWKLLAK  392 (394)
Q Consensus       331 g~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~--~~~v~~l~~sp~~-~l~-tgs---~Dg~I~vWd~~~~  392 (394)
                      + .++++...|+..+||.+. ++.....+..  ...+..++++|++ .|+ +.+   ..++|.+||+.+.
T Consensus       374 ~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          374 N-RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             T-EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             C-EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            4 488888889988777654 3444444442  4568899999987 333 333   3478999998653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.10  E-value=1.7e-08  Score=91.88  Aligned_cols=193  Identities=12%  Similarity=0.050  Sum_probs=122.3

Q ss_pred             EEEecccCCCeEEEEecCCCC-EEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          167 LAKLEGHEKAVSGIALPLRSD-KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      +..+..+.....+++|+|+++ +++++..++.|  ||.+++ ...+.                      .+...+.++++
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~----------------------~~~~~~~~l~~   76 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM----------------------HPSHHQNGHCL   76 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE----------------------SSCSSEEEEEE
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE----------------------CCCCCcceeeE
Confidence            344555677789999999998 77788777774  777766 33322                      23445677777


Q ss_pred             c--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC----CCCcEEEEEc--CCEEEEEeC-----------------CCcEE
Q 016134          244 G--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH----TDAPMSLLCW--DQFLLSCSL-----------------DHTIK  298 (394)
Q Consensus       244 ~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s~s~-----------------Dg~i~  298 (394)
                      +  ++++++...++.|.+||.++++........    ...+..++++  +.++++.+.                 .+.|.
T Consensus        77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~  156 (296)
T 3e5z_A           77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVF  156 (296)
T ss_dssp             CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEE
T ss_pred             CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEE
Confidence            6  556666656789999999888754433221    2345677787  677776321                 23444


Q ss_pred             EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC-CCce---eEEEe-cCCcEEEEEECCCC
Q 016134          299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP-SFME---RGRIF-SKHEVRVIEIGPDK  373 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-~~~~---~~~~~-~~~~v~~l~~sp~~  373 (394)
                      .+|..  ..+..+.....  ...  ..+++|+++ +|++.+.++.|.+|++. ++..   ...+. ....+..++++++|
T Consensus       157 ~~~~~--g~~~~~~~~~~--~~~--gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          157 RLAPD--GTLSAPIRDRV--KPN--GLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             EECTT--SCEEEEECCCS--SEE--EEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred             EECCC--CCEEEeecCCC--CCc--cEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence            44433  33333332221  122  234699999 55888888999999997 4443   22231 23456789999999


Q ss_pred             EEEEEeCCCeEEEEeCC
Q 016134          374 LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       374 ~l~tgs~Dg~I~vWd~~  390 (394)
                      .|..+. ++.|.+|+.+
T Consensus       230 ~l~v~~-~~~v~~~~~~  245 (296)
T 3e5z_A          230 LIWASA-GDGVHVLTPD  245 (296)
T ss_dssp             CEEEEE-TTEEEEECTT
T ss_pred             CEEEEc-CCeEEEECCC
Confidence            444444 7899999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.08  E-value=7.1e-09  Score=106.49  Aligned_cols=228  Identities=10%  Similarity=-0.053  Sum_probs=135.4

Q ss_pred             cccccccCCCeecCCC-CCeEEEEEcCCCceEEEEe------cccCCCeEEEEecCCCCEEEEEeCCC-----c--eeec
Q 016134          136 NVCCHWLLGNCVRGDE-CRFLHSWFCGEGLTMLAKL------EGHEKAVSGIALPLRSDKLFSGSRDG-----T--AWNI  201 (394)
Q Consensus       136 ~~~~~~~~~~~~~g~~-~~~i~iWd~~~~~~~~~~l------~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~--vWd~  201 (394)
                      .|++.+++-....+.. ...|.+.+...+ +....+      .+|...+..++|+|||++|+.+..++     .  +||+
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEG-EARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTS-CCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCC-CcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence            3667666544443332 224444444333 221111      23445789999999999998776543     3  6999


Q ss_pred             CCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCe----------------EEEEeCCCC
Q 016134          202 ESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNT----------------IRVWELDTL  265 (394)
Q Consensus       202 ~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~----------------V~iwd~~~~  265 (394)
                      ++++..........+..++|+||                    ++.|+.++.++.                |++|++.++
T Consensus       159 ~tg~~~~~~~~~~~~~~~~wspD--------------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~  218 (710)
T 2xdw_A          159 DGAKELPDVLERVKFSCMAWTHD--------------------GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD  218 (710)
T ss_dssp             TTTEEEEEEEEEECSCCEEECTT--------------------SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred             CCCCCCcccccCcccceEEEEeC--------------------CCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence            99887643211111223344433                    345555555444                999999887


Q ss_pred             ce----eEEEcCCCCCcEEEEEc--CCEEEEEeC-----CCcEEEEEeCC------Cc-eeeEeecccCCcceEEEEeeE
Q 016134          266 EP----VMTLNDHTDAPMSLLCW--DQFLLSCSL-----DHTIKVWFATG------RG-NLEAAYTHKEDNGVLALGGLN  327 (394)
Q Consensus       266 ~~----~~~~~~h~~~v~~l~~~--~~~l~s~s~-----Dg~i~vwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~  327 (394)
                      +.    +.....|...+..+.++  +++|+..+.     +..|.+||+.+      +. ....+..+....  ..   .+
T Consensus       219 ~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~--~~---~~  293 (710)
T 2xdw_A          219 QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE--YD---YV  293 (710)
T ss_dssp             GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC--EE---EE
T ss_pred             cccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE--EE---EE
Confidence            62    22223355567788888  777777664     57899999976      32 344444433322  22   25


Q ss_pred             CCCCCcEEEEEeCC---CeEEEEECCCCce--eEEE-ecC--CcEEEEEECCCC-EEEEEeCCCeE--EEEeC
Q 016134          328 DPDGKPVLICACND---NTVHLYELPSFME--RGRI-FSK--HEVRVIEIGPDK-LFFTGDGAGML--GVWKL  389 (394)
Q Consensus       328 s~~g~~~l~sgs~d---g~I~iwd~~~~~~--~~~~-~~~--~~v~~l~~sp~~-~l~tgs~Dg~I--~vWd~  389 (394)
                      +++|+.+++.+..+   ..|.+||+.++..  ...+ .+.  ..+..++|++++ ++++...|+..  .+|++
T Consensus       294 s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            78888555555433   3799999987642  2333 332  358889999777 88888888854  55565

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.06  E-value=8.5e-09  Score=106.45  Aligned_cols=238  Identities=11%  Similarity=-0.064  Sum_probs=142.0

Q ss_pred             CCcccccccccccccCCCC-----CcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC
Q 016134           75 PPSYNRLKNNLWVSSGSED-----RIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG  149 (394)
Q Consensus        75 ~~~~~~~~~~~~~~s~s~d-----~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g  149 (394)
                      ..+|++  |+.+|+..+.+     .+|++||++++......             .+...+..+. |+|+ ..++....+.
T Consensus       167 ~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-------------~~~~~~~~~~-wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          167 AWAASD--DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-------------LKWVKFSGLA-WLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEECT--TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-------------EEEEESCCCE-ESTT-SEEEEEECCC
T ss_pred             eEEECC--CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-------------CCCceeccEE-EECC-CEEEEEEecC
Confidence            456776  88888865543     57999999988753100             0001123455 8888 7776555444


Q ss_pred             CC----------CCeEEEEEcCCCc---eEEEEecccCCCeEEEEecCCCCEEEEEeCCC-----c--eeecCCC--c-E
Q 016134          150 DE----------CRFLHSWFCGEGL---TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG-----T--AWNIESS--A-E  206 (394)
Q Consensus       150 ~~----------~~~i~iWd~~~~~---~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~--vWd~~~~--~-~  206 (394)
                      ..          ...|++|++.++.   .++.....|...+..+.|+|||++|+..+.++     .  +||+.++  + .
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence            31          4469999997664   23444344545689999999999998887654     2  5777665  3 3


Q ss_pred             EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeC----CCeEEEEeCCCC--ceeEEEcCCCCCcEE
Q 016134          207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSM----DNTIRVWELDTL--EPVMTLNDHTDAPMS  280 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~----Dg~V~iwd~~~~--~~~~~~~~h~~~v~~  280 (394)
                      ..+..+..                     .....+.-+++.|+..+.    ++.|.+||+.++  +....+..+...+..
T Consensus       310 ~~l~~~~~---------------------~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          310 TALIPDLK---------------------AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             EEEECSSS---------------------SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             EEecCCCC---------------------ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence            33222211                     111112223666666655    456999999875  333334444455667


Q ss_pred             EEEc-CCEEEEEeCCCcEEEEEeC-CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe---CCCeEEEEECCCCc
Q 016134          281 LLCW-DQFLLSCSLDHTIKVWFAT-GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC---NDNTVHLYELPSFM  353 (394)
Q Consensus       281 l~~~-~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs---~dg~I~iwd~~~~~  353 (394)
                      +.+. +.++++...|+..+||.+. +++....+.. .....+.  ...++|+++.++++.+   ..++|++||+.+++
T Consensus       369 ~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~--~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          369 VGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSAS--GLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEE--EEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEE--EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7777 5577788889988888665 3443433322 1122222  2345788874555443   24789999998875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.01  E-value=1.2e-07  Score=89.34  Aligned_cols=251  Identities=10%  Similarity=0.007  Sum_probs=156.9

Q ss_pred             ccccccccCCCeec-CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC----------CCc--eeec
Q 016134          135 KNVCCHWLLGNCVR-GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR----------DGT--AWNI  201 (394)
Q Consensus       135 ~~~~~~~~~~~~~~-g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----------Dg~--vWd~  201 (394)
                      ..|++.++-..... ...++.|.+.|..+. +.+.++..-..+ . ++++||+++|+.+..          ++.  +||.
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTT-EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCC-eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            44555554332221 122358999999887 777777655555 4 999999999988762          333  6999


Q ss_pred             CCCcEEE-ecCC-------CCcEEEEEEcCC--EEEEEecC---------CCCCCE-EEEEe---------cCCeEEEEe
Q 016134          202 ESSAEFS-LDGP-------VGEVYSMVVANE--MLFAGAQD---------GHTRPV-TCLAV---------GRSRLCSGS  252 (394)
Q Consensus       202 ~~~~~~~-~~~~-------~~~v~~l~~~~~--~l~~~~~~---------~h~~~V-~~l~~---------~~~~l~sgs  252 (394)
                      .+.+.+. +.-.       ...-..+.++++  .++++...         ..+..+ ..+..         ....+++.+
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~  196 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  196 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEEC
Confidence            9998763 2111       113446788887  66665432         112221 22221         145677888


Q ss_pred             CCCeEEEEeCCC-CceeEEEcCCC----CCcE-EEEEc--CCEEEEEeCCCcEEEEEeCCCc--eeeEee--c-------
Q 016134          253 MDNTIRVWELDT-LEPVMTLNDHT----DAPM-SLLCW--DQFLLSCSLDHTIKVWFATGRG--NLEAAY--T-------  313 (394)
Q Consensus       253 ~Dg~V~iwd~~~-~~~~~~~~~h~----~~v~-~l~~~--~~~l~s~s~Dg~i~vwd~~~~~--~~~~~~--~-------  313 (394)
                      .||++.+.++.+ ++.+.+...+.    .++. ...|.  ...++..+.+++|.+.|+....  ....+.  .       
T Consensus       197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g  276 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  276 (386)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccc
Confidence            999999999976 55533222121    1221 13443  3344446678999999987553  222221  0       


Q ss_pred             -ccCCcceEEEEeeECCCCCcEEEEEeC---------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEE-eC
Q 016134          314 -HKEDNGVLALGGLNDPDGKPVLICACN---------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTG-DG  380 (394)
Q Consensus       314 -~~~~~~~~~~~~~~s~~g~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tg-s~  380 (394)
                       .......+.+    +++++.++++-..         .+.|.++|+.+++.+..+.....+..|++++|+  +|++. ..
T Consensus       277 ~~p~g~q~~a~----~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~  352 (386)
T 3sjl_D          277 WRPGGWQQVAY----HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG  352 (386)
T ss_dssp             EEECSSSCEEE----ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT
T ss_pred             ccCCCcceeeE----CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC
Confidence             0112233443    7888855554431         257999999999999999888889999999998  55554 55


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      ++.|.++|..+.
T Consensus       353 ~~~VsViD~~t~  364 (386)
T 3sjl_D          353 DKTLYIHDAESG  364 (386)
T ss_dssp             TTEEEEEETTTC
T ss_pred             CCeEEEEECCCC
Confidence            899999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.01  E-value=2.3e-06  Score=77.07  Aligned_cols=211  Identities=12%  Similarity=0.085  Sum_probs=137.0

Q ss_pred             ecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEe--cCCCCcEEEEEEcCC-EEEEEec-C-----------
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSL--DGPVGEVYSMVVANE-MLFAGAQ-D-----------  232 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~--~~~~~~v~~l~~~~~-~l~~~~~-~-----------  232 (394)
                      +..+...+.+|+++++++++++...++.  +||.. ++....  ......+..+++.++ .++.+.. +           
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~   88 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI   88 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence            3445678999999999998877666666  47777 554433  234567888888766 3333332 1           


Q ss_pred             -------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCcEEEEEc--CCEEEEEeCCCcEEEE
Q 016134          233 -------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMT-LNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       233 -------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vw  300 (394)
                             .....+.+++++  +.++++...++.|.+||. +++.... +..+...+..+++.  +.++++...++.|..|
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI  167 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence                   123456777776  455565566889999998 5554332 23345568888888  5566666567899999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EEE
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l~  376 (394)
                      |. +++... +..........  .+.+++++. ++++...++.|.+||. +++... +..   ...+.++++++++ +++
T Consensus       168 ~~-~g~~~~-~~~~~~~~~~~--~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v  240 (299)
T 2z2n_A          168 TE-SGDITE-FKIPTPASGPV--GITKGNDDA-LWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWF  240 (299)
T ss_dssp             CT-TCCEEE-EECSSTTCCEE--EEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEE
T ss_pred             cC-CCcEEE-eeCCCCCCcce--eEEECCCCC-EEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEE
Confidence            98 544332 21111112222  334688888 7777667889999999 665432 322   3569999999999 555


Q ss_pred             EEeCCCeEEEEeC
Q 016134          377 TGDGAGMLGVWKL  389 (394)
Q Consensus       377 tgs~Dg~I~vWd~  389 (394)
                      +...++.|.+||.
T Consensus       241 ~~~~~~~i~~~d~  253 (299)
T 2z2n_A          241 TEWGANKIGRLTS  253 (299)
T ss_dssp             EETTTTEEEEEET
T ss_pred             eccCCceEEEECC
Confidence            5557788999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.97  E-value=1.2e-07  Score=84.66  Aligned_cols=189  Identities=15%  Similarity=0.084  Sum_probs=118.4

Q ss_pred             CeEEEEecCCCCEEE-EEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEE
Q 016134          176 AVSGIALPLRSDKLF-SGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCS  250 (394)
Q Consensus       176 ~V~~l~~s~~~~~l~-sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~s  250 (394)
                      ...+|++++++++++ +...++.|  ||..+.......                     ..+...+.+++++  ++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---------------------~~~~~~p~~i~~~~~g~l~v~   83 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------------------FNGLYQPQGLAVDGAGTVYVT   83 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC---------------------CCSCCSCCCEEECTTCCEEEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe---------------------eCCcCCcceeEECCCCCEEEE
Confidence            778999999998777 44566665  554433322110                     0122345667776  454444


Q ss_pred             EeCCCeEEEEeCCCCceeEEEc-CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeE
Q 016134          251 GSMDNTIRVWELDTLEPVMTLN-DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLN  327 (394)
Q Consensus       251 gs~Dg~V~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (394)
                      .. ++.|.+||...... ..+. .....+..++++  +.++++...++.|.+|+..+................++    +
T Consensus        84 ~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~----~  157 (270)
T 1rwi_B           84 DF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA----V  157 (270)
T ss_dssp             ET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEE----E
T ss_pred             cC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEE----E
Confidence            44 88999999876543 3333 233567889887  66666666788999997554332221111111122233    4


Q ss_pred             CCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          328 DPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       328 s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++++. ++++...++.|.+||............ ...+..++++++| ++++...++.|.+|+....
T Consensus       158 ~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          158 DNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             eCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            88898 788777788999999887654432222 3568999999998 6666667889999997643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.96  E-value=2.3e-06  Score=77.10  Aligned_cols=228  Identities=11%  Similarity=0.007  Sum_probs=139.2

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCc
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSA  205 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~  205 (394)
                      ....+. ..+.+....+..    .++.|.+||.. +......+..+...+.+|+++++++++++...++.|  +|.. ++
T Consensus        21 ~p~~i~-~d~~g~l~v~~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           21 GPYGIT-SSEDGKVWFTQH----KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             CEEEEE-ECTTSCEEEEET----TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             Ccceee-ECCCCCEEEEcC----CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            344555 555554333222    23489999987 422222333445789999999999888877666665  5555 43


Q ss_pred             EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeE-EEcCCCCCcEEEE
Q 016134          206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVM-TLNDHTDAPMSLL  282 (394)
Q Consensus       206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~-~~~~h~~~v~~l~  282 (394)
                      ...+...                    .....+.+++++  +.++++...++.|..+|.. ++... .+......+..+.
T Consensus        94 ~~~~~~~--------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~  152 (300)
T 2qc5_A           94 FTEYPLP--------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT  152 (300)
T ss_dssp             EEEEECS--------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred             eEEecCC--------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence            3221110                    122456777776  4555555557899999987 55442 2333456678888


Q ss_pred             Ec--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          283 CW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       283 ~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      +.  +++.++...++.|..+|. +++... +..........  .+.+++++. ++++....+.|.+||. ++........
T Consensus       153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~--~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~  226 (300)
T 2qc5_A          153 LGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPV--GITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIP  226 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEE--EEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             ECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcc--eEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECC
Confidence            87  666665555788999988 444332 22111112222  334688887 7776666788999998 4443332221


Q ss_pred             --CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          361 --KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       361 --~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                        ...+.++++++++ ++++...++.|..|+.
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence              4568999999999 5555556788999886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.96  E-value=4.8e-07  Score=86.56  Aligned_cols=233  Identities=11%  Similarity=0.005  Sum_probs=141.5

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC--ce--eecCC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG--TA--WNIES  203 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg--~v--Wd~~~  203 (394)
                      ....++ +.+.+...++..    ....|++||..++ ........ ..... ++|+++++.|+.+..++  .|  ++...
T Consensus       132 ~P~~la-~d~~g~lyv~d~----~~~~I~~id~~~g-~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          132 YMWGIA-AVGNNTVLAYQR----DDPRVRLISVDDN-KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CEEEEE-ECSTTEEEEEET----TTTEEEEEETTTT-EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CceEEE-EeCCCCEEEEec----CCCcEEEEECCCC-EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            445555 666665443322    2348999999876 44444333 33334 99999999999998876  44  44443


Q ss_pred             CcEEEecCCCCcEEEEEEcCCEEEEEecCC-CCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEE----EcCCCC
Q 016134          204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDG-HTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMT----LNDHTD  276 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~-h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~----~~~h~~  276 (394)
                      +......                  +.... ....+.+++++  +..|+.+..++.|+.||..++.....    ..++..
T Consensus       204 ~~~~~~~------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~  265 (409)
T 3hrp_A          204 GWAPTRI------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG  265 (409)
T ss_dssp             TTCEEEE------------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred             CceeEEe------------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence            3321110                  00001 23445566776  35566677788999999987664322    222222


Q ss_pred             Cc-E-EEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeEeecccCC-----------cceEEEEeeECCCCCcEEEEEe-
Q 016134          277 AP-M-SLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEAAYTHKED-----------NGVLALGGLNDPDGKPVLICAC-  339 (394)
Q Consensus       277 ~v-~-~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~g~~~l~sgs-  339 (394)
                      .- . .++++  +. ++++-..++.|+.||....  ...+......           .......++++++|. ++++-. 
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~  342 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF  342 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC
Confidence            22 3 88887  34 4555556788999987543  3333222100           001122345699998 888888 


Q ss_pred             CCCeEEEEECCCCceeEEEec---------------CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          340 NDNTVHLYELPSFMERGRIFS---------------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       340 ~dg~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      .++.|+.|++.++........               -.....|++++++ ++++-..+++|+.+++
T Consensus       343 ~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            899999999887764333221               1358999999999 7777778889988875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.95  E-value=7.9e-07  Score=80.15  Aligned_cols=254  Identities=9%  Similarity=-0.005  Sum_probs=147.1

Q ss_pred             cCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEE
Q 016134           89 SGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLA  168 (394)
Q Consensus        89 s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~  168 (394)
                      +...+..+.++|.+ +.+....           .......+..+. +.+.+....+..    ..+.|..+|.. +.....
T Consensus        36 ~~~~~~~v~~~~~~-~~~~~~~-----------~~~~~~~~~~i~-~~~~g~l~v~~~----~~~~v~~~d~~-g~~~~~   97 (300)
T 2qc5_A           36 TQHKANKISSLDQS-GRIKEFE-----------VPTPDAKVMCLI-VSSLGDIWFTEN----GANKIGKLSKK-GGFTEY   97 (300)
T ss_dssp             EETTTTEEEEECTT-SCEEEEE-----------CSSTTCCEEEEE-ECTTSCEEEEET----TTTEEEEECTT-SCEEEE
T ss_pred             EcCCCCeEEEECCC-CceEEEE-----------CCCCCCcceeEE-ECCCCCEEEEec----CCCeEEEECCC-CCeEEe
Confidence            33456777788876 4432100           011123455666 556554333221    23478899887 422223


Q ss_pred             EecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       169 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                      .+......+.++++.++++++++...++.|  +|.+ ++......                    ......+.+++++  
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--------------------~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL--------------------PNKGSYPAFITLGSD  156 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC--------------------SSTTCCEEEEEECTT
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC--------------------CCCCCCceeEEECCC
Confidence            333345779999999999888877666665  5554 43332210                    0123456777775  


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMT-LNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      ++++++...++.|.++|. +++.... +..+...+..+.++  +.+.++....+.|.+||. +++... ...........
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~  233 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTPNARPH  233 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEE
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCCCCCce
Confidence            455555555788999998 5554432 22344567888887  555555555678999997 333322 21111112222


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEE-Ee-cCCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGR-IF-SKHEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~-~~-~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                        .+.++++|. ++++...++.|..||. ++..... +. ....+.++++.++|.|..++.. .|..++.
T Consensus       234 --~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          234 --AITAGKNSE-IWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNL  298 (300)
T ss_dssp             --EEEECSTTC-EEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred             --EEEECCCCC-EEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence              334688988 7776666789999998 4433322 22 1356889999999955555544 6766664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.94  E-value=6.6e-09  Score=98.16  Aligned_cols=140  Identities=11%  Similarity=0.069  Sum_probs=101.2

Q ss_pred             CEEEEEec--CCeEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeC
Q 016134          237 PVTCLAVG--RSRLCSGSMDNTIRVWELDTLE-----------PVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       237 ~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~  303 (394)
                      .++.|+++  ..++++|+.+ .+++|+++..+           ...... +.. |+.|+|++..|+++ .++.|++||++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCFHGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence            46666776  6788888887 46669875332           222333 556 99999988888888 88999999998


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCe
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGM  383 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~  383 (394)
                      +.........+...  +..+.  +.+.   -++++..||.|.+||+.++....   ....|++++|+|+| ++.|..||.
T Consensus       115 sl~~~~~~~~~~~~--v~~i~--~~~p---~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~  183 (388)
T 1xip_A          115 ELSEFRTVTSFEKP--VFQLK--NVNN---TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRS  183 (388)
T ss_dssp             STTCEEEEEECSSC--EEEEE--ECSS---EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSC
T ss_pred             hhhccCccceeecc--eeeEE--ecCC---CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCc
Confidence            76655555444433  33322  2322   27778899999999999877643   34589999999999 678999999


Q ss_pred             EEEEeCCC
Q 016134          384 LGVWKLLA  391 (394)
Q Consensus       384 I~vWd~~~  391 (394)
                      +++|+...
T Consensus       184 i~~~~~~~  191 (388)
T 1xip_A          184 FQSFAWRN  191 (388)
T ss_dssp             EEEEEEET
T ss_pred             EEEEcCCC
Confidence            99997654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=2.5e-07  Score=87.06  Aligned_cols=226  Identities=9%  Similarity=-0.024  Sum_probs=136.9

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcE------EEEEEc
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEV------YSMVVA  222 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v------~~l~~~  222 (394)
                      .++.|..+|..++ +.+..+............  .+..++.++.++.|  +|.++++.+-.......+      ......
T Consensus       111 ~~g~l~a~d~~tG-~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          111 EKAQVYALNTSDG-TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             TTSEEEEEETTTC-CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence            3458999999888 444444433222212222  24577778888873  777777765221111111      111222


Q ss_pred             CCEEEEEecCC-------CCCC-EEE---------------------EEecCCeEEEEeCCCeEEEEeCCCCceeEEEcC
Q 016134          223 NEMLFAGAQDG-------HTRP-VTC---------------------LAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND  273 (394)
Q Consensus       223 ~~~l~~~~~~~-------h~~~-V~~---------------------l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~  273 (394)
                      .+.++++..++       .++. ++.                     ....++.++.++.++.|..+|.++++.+.....
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL  267 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence            33444443321       1111 111                     112256788888899999999999998876652


Q ss_pred             CCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccC-CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCC
Q 016134          274 HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF  352 (394)
Q Consensus       274 h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~  352 (394)
                        .....+...+..++.++.++.|..+|..+++.+-....... ......+      .+. .|+.++.+|.|.++|..++
T Consensus       268 --~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~------~~~-~l~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          268 --GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL------YNG-NLVVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             --CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE------ETT-EEEEECTTSEEEEEETTTC
T ss_pred             --CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE------ECC-EEEEEeCCCeEEEEECCCC
Confidence              34556666788899999999999999998876554432111 1111222      123 5777888999999999999


Q ss_pred             ceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          353 MERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       353 ~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                      +.+..... ...+.......++.|+.++.+|.|..|+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          339 RFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             cEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            88877655 3333221112256888899999999987

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.90  E-value=3.3e-07  Score=93.78  Aligned_cols=241  Identities=15%  Similarity=0.097  Sum_probs=144.2

Q ss_pred             CCCCccceeeeccccccccccCCCee-cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc---
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCV-RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---  197 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~-~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---  197 (394)
                      ..++...+..+. ++|++.++|-... .|+....|++||+.++......+.+.  ....++|+ |++.|+.++.+..   
T Consensus       124 a~~~~~~l~~~~-~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          124 SPDGTTALDQLS-FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             STTSCCEEEEEE-ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             cCCCcEEEEEEE-ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccc
Confidence            345556788888 9999999885443 45556799999999884332233221  13567899 9999998887731   


Q ss_pred             ------------eeecCCCcE--EEecCCCCcEEEEEEcCCEEEEEecCC-CCCCEEEEEec--CCeEE-EEe---CCCe
Q 016134          198 ------------AWNIESSAE--FSLDGPVGEVYSMVVANEMLFAGAQDG-HTRPVTCLAVG--RSRLC-SGS---MDNT  256 (394)
Q Consensus       198 ------------vWd~~~~~~--~~~~~~~~~v~~l~~~~~~l~~~~~~~-h~~~V~~l~~~--~~~l~-sgs---~Dg~  256 (394)
                                  +|++.+...  ..+..                   ... |...+..+.|+  +++|+ +.+   .+..
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~-------------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  260 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFG-------------------AIPAQHHRYVGATVTEDDRFLLISAANSTSGNR  260 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEES-------------------CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEe-------------------cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence                        355555432  11110                   011 23334555565  44443 322   2358


Q ss_pred             EEEEeCCCCc-eeEEEcCCCCCcEEEE-EcCCEEE-EEeCC---CcEEEEEeCCCce--eeEeecccCCcceEEEEeeEC
Q 016134          257 IRVWELDTLE-PVMTLNDHTDAPMSLL-CWDQFLL-SCSLD---HTIKVWFATGRGN--LEAAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       257 V~iwd~~~~~-~~~~~~~h~~~v~~l~-~~~~~l~-s~s~D---g~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~s  328 (394)
                      |.++|+.+++ ....+..+........ ..++.|+ ....+   +.|..+|+.++..  ...+..+...  .+    .++
T Consensus       261 i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~----~~s  334 (693)
T 3iuj_A          261 LYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ--VL----TVH  334 (693)
T ss_dssp             EEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS--CE----EEE
T ss_pred             EEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC--EE----EEE
Confidence            9999998764 4556666666665542 3355544 44443   5799999887643  2344434332  22    357


Q ss_pred             CCCCcEEEEEeCCC--eEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCC----CeEEEEeCCCC
Q 016134          329 PDGKPVLICACNDN--TVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGA----GMLGVWKLLAK  392 (394)
Q Consensus       329 ~~g~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~D----g~I~vWd~~~~  392 (394)
                      ++++.++++...++  .|++|++... ....+..  ...+..+.+++++ .|+....+    +.|..||+.+.
T Consensus       335 ~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          335 SGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            78885555555555  6889988754 3344432  4467788888887 43333333    78889988654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.89  E-value=2.5e-06  Score=76.17  Aligned_cols=203  Identities=11%  Similarity=0.028  Sum_probs=137.7

Q ss_pred             eEEEEecccCC--CeEEEEecCCCCEEEEEeCC--Cc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          165 TMLAKLEGHEK--AVSGIALPLRSDKLFSGSRD--GT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       165 ~~~~~l~~h~~--~V~~l~~s~~~~~l~sgs~D--g~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      +.+.++ .|..  ....|+|++++.++++.+..  +.  +.|+.+++.+......                   . ....
T Consensus        10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-------------------~-~~fg   68 (266)
T 2iwa_A           10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-------------------D-SYFG   68 (266)
T ss_dssp             EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-------------------T-TCCE
T ss_pred             eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-------------------C-Ccce
Confidence            455555 3443  36899999987555555543  33  5899988876321110                   1 1122


Q ss_pred             EEEEecCCeEEEE-eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          239 TCLAVGRSRLCSG-SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       239 ~~l~~~~~~l~sg-s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      ..+++.++.|+.. -.++.|.++|..+.+.+.++......-..++.+++.|+++..+++|.++|..+.+.+..+......
T Consensus        69 eGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~  148 (266)
T 2iwa_A           69 EGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG  148 (266)
T ss_dssp             EEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             EEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC
Confidence            3455666555444 457899999999999999886331333567777776666667899999999888777776643321


Q ss_pred             c---ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--------------CcEEEEEECCCC--EEEEE
Q 016134          318 N---GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--------------HEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       318 ~---~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~~--~l~tg  378 (394)
                      .   ....+.  +. ++. +++....++.|.+.|..+++.+..+...              ...+.|+++|++  +++++
T Consensus       149 ~p~~~~nele--~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          149 HRVIRLNELE--YI-NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EECCCEEEEE--EE-TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeEE--EE-CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            1   122222  34 565 6666667899999999999998888642              356899999998  78888


Q ss_pred             eCCCeEEEEeCCCC
Q 016134          379 DGAGMLGVWKLLAK  392 (394)
Q Consensus       379 s~Dg~I~vWd~~~~  392 (394)
                      .....|.+.++.+.
T Consensus       225 k~~~~v~~i~l~~~  238 (266)
T 2iwa_A          225 KLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTCSEEEEEEEEEC
T ss_pred             CCCCeEEEEEEecc
Confidence            88899988887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.87  E-value=9.5e-07  Score=80.42  Aligned_cols=205  Identities=12%  Similarity=0.064  Sum_probs=118.7

Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .+.|+.||..++..  ..+ .....+.+++++++++++++ ..++. +||.++++...+.....                
T Consensus        34 ~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~~~~~~~~----------------   93 (297)
T 3g4e_A           34 AKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSAVVLATVDN----------------   93 (297)
T ss_dssp             TTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEEEEEECCT----------------
T ss_pred             CCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-ECCeEEEEECCCCcEEEEEecCC----------------
Confidence            34899999987633  222 24578999999999995555 44444 58887776543221100                


Q ss_pred             cCCCCCCEEEEEec--CCeEEEEeC---------CCeEEEEeCCC-CceeEEEcCCCCCcEEEEEc--CCEE-EEEeCCC
Q 016134          231 QDGHTRPVTCLAVG--RSRLCSGSM---------DNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--DQFL-LSCSLDH  295 (394)
Q Consensus       231 ~~~h~~~V~~l~~~--~~~l~sgs~---------Dg~V~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~Dg  295 (394)
                       +.....+..++++  ++++++...         ...-.||.+.. ++... +..+......++|+  ++.| ++.+.++
T Consensus        94 -~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           94 -DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             -TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             -CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCC
Confidence             0112234556665  343333211         12234444432 33322 22233456788887  5655 4555678


Q ss_pred             cEEEEEeC--CCcee--eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-CcEEEEEEC
Q 016134          296 TIKVWFAT--GRGNL--EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-HEVRVIEIG  370 (394)
Q Consensus       296 ~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~s  370 (394)
                      .|.+||+.  ++...  ..+..... .....-.++++++|. +.++....+.|.+||..+++.+..+... ..+++++|.
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~-~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEK-EEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCG-GGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             cEEEEeccCCCCcccCcEEEEECCC-CCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            99999984  33321  11211111 011122334689997 7777777889999999988888877764 679999998


Q ss_pred             -CCC--EEEEEeC
Q 016134          371 -PDK--LFFTGDG  380 (394)
Q Consensus       371 -p~~--~l~tgs~  380 (394)
                       |++  ++++...
T Consensus       250 g~d~~~L~vt~~~  262 (297)
T 3g4e_A          250 GKNYSEMYVTCAR  262 (297)
T ss_dssp             SGGGCEEEEEEBC
T ss_pred             CCCCCEEEEEcCC
Confidence             776  4455443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=7.4e-07  Score=85.24  Aligned_cols=233  Identities=10%  Similarity=0.012  Sum_probs=135.6

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC----------CCc--eeecCCCcEEE-ecCC-------
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR----------DGT--AWNIESSAEFS-LDGP-------  212 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----------Dg~--vWd~~~~~~~~-~~~~-------  212 (394)
                      +.|.+.|..+. +.+.++.--..+  .++++||+++|+.+..          ++.  ++|..+++.+. +.-.       
T Consensus        99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCC-EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            58999999887 777777655556  8999999999988863          333  68988888763 2111       


Q ss_pred             CCcEEEEEEcCC--EEEEEecC---------CCCCCE-EEEEe---------cCCeEEEEeCCCeEEEEeCCCCceeEEE
Q 016134          213 VGEVYSMVVANE--MLFAGAQD---------GHTRPV-TCLAV---------GRSRLCSGSMDNTIRVWELDTLEPVMTL  271 (394)
Q Consensus       213 ~~~v~~l~~~~~--~l~~~~~~---------~h~~~V-~~l~~---------~~~~l~sgs~Dg~V~iwd~~~~~~~~~~  271 (394)
                      ......+.++++  .++++...         ..+..+ ..+..         ....+++.+.||++.+.++.+++.....
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            112234556655  44444321         011111 11111         0233455566666666666544444221


Q ss_pred             ----cCCCCCc-EEEEEc--CCEEEEEeCCCcEEEEEeCCCceee--Eeec----------ccCCcceEEEEeeECCCCC
Q 016134          272 ----NDHTDAP-MSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE--AAYT----------HKEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       272 ----~~h~~~v-~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~--~~~~----------~~~~~~~~~~~~~~s~~g~  332 (394)
                          .....++ ..+.+.  +..++..+..+.|.+.|+.......  .+..          .......+    .++|+++
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v----a~s~dg~  331 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT----AYHRQSD  331 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE----EEEGGGT
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee----EEcCCCC
Confidence                1111111 012223  4444444556677777765432111  0000          00001112    3588888


Q ss_pred             cEEEEEe---------CCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEe-CCCeEEEEeCCCC
Q 016134          333 PVLICAC---------NDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       333 ~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs-~Dg~I~vWd~~~~  392 (394)
                      .++++..         .++.|.++|+.+.+.+..+........++|+||+  ++++.. .++.|.++|+.+.
T Consensus       332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            5555533         1357999999999999999877779999999998  677776 5999999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.81  E-value=8.1e-07  Score=81.16  Aligned_cols=219  Identities=12%  Similarity=0.028  Sum_probs=128.2

Q ss_pred             eeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcE
Q 016134          129 SKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE  206 (394)
Q Consensus       129 v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~  206 (394)
                      ..... |.+.+..+.-   .+...+.|..|+....   ...+..+...+..++++++|+++++...++.|  |+.+ ++.
T Consensus        47 ~egp~-~~~~g~~l~~---~d~~~~~i~~~~~~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           47 SEGPA-WWEAQRTLVW---SDLVGRRVLGWREDGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             EEEEE-EEGGGTEEEE---EETTTTEEEEEETTSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             ccCCe-EeCCCCEEEE---EECCCCEEEEEeCCCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE
Confidence            34444 7887763321   1223348999988433   34555567789999999999976665555554  5654 443


Q ss_pred             EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEE----EeC-------------CCeEEEEeCCCCce
Q 016134          207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCS----GSM-------------DNTIRVWELDTLEP  267 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~s----gs~-------------Dg~V~iwd~~~~~~  267 (394)
                      ..+.....                 ......+.+++++  ++++++    |..             .+.|..||.++++.
T Consensus       119 ~~~~~~~~-----------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          119 HLLVGRYA-----------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             EEEECEET-----------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             EEEEeccC-----------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence            22211100                 0011234455565  445554    332             25678888776665


Q ss_pred             eEEEcCCCCCcEEEEEc--CCEEEEEeCC------CcEEEEEeCCCceeeE---eecc-cCCcceEEEEeeECCCCCcEE
Q 016134          268 VMTLNDHTDAPMSLLCW--DQFLLSCSLD------HTIKVWFATGRGNLEA---AYTH-KEDNGVLALGGLNDPDGKPVL  335 (394)
Q Consensus       268 ~~~~~~h~~~v~~l~~~--~~~l~s~s~D------g~i~vwd~~~~~~~~~---~~~~-~~~~~~~~~~~~~s~~g~~~l  335 (394)
                      ....  .......++|+  ++.|+.+...      +.|.+||+.... +..   +... ......+    .++++|. +.
T Consensus       182 ~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi----~~d~~G~-lw  253 (305)
T 3dr2_A          182 QRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGF----CVDRGGW-LW  253 (305)
T ss_dssp             EEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSE----EECTTSC-EE
T ss_pred             EEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeE----EECCCCC-EE
Confidence            4333  33456788888  6667776655      789999987654 211   1111 1111122    3488998 55


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCe
Q 016134          336 ICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGM  383 (394)
Q Consensus       336 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~  383 (394)
                      ++. .+ .|.+|+. +++.+..+.....+..++|.+++ .|+.++.++.
T Consensus       254 v~~-~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          254 SSS-GT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             ECC-SS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred             Eec-CC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence            443 44 5999998 46677676665578999999888 7777766643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.80  E-value=6.4e-07  Score=91.67  Aligned_cols=233  Identities=11%  Similarity=0.040  Sum_probs=135.1

Q ss_pred             cccccccccccc-----cCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccc--eeeeccccccccccCCCeecC
Q 016134           77 SYNRLKNNLWVS-----SGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKST--SKKTTLKNVCCHWLLGNCVRG  149 (394)
Q Consensus        77 ~~~~~~~~~~~~-----s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~--v~~~~~~~~~~~~~~~~~~~g  149 (394)
                      +|++  ++.+++     +|+.+.+|++||++++.....               +...  ...+. |+ ++..++-...+.
T Consensus       135 ~~Sp--Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---------------~~~~~k~~~~~-Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          135 SFSR--DGRILAYSLSLAGSDWREIHLMDVESKQPLET---------------PLKDVKFSGIS-WL-GNEGFFYSSYDK  195 (693)
T ss_dssp             EECT--TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---------------EEEEEESCCCE-EE-TTTEEEEEESSC
T ss_pred             EECC--CCCEEEEEEecCCCceEEEEEEECCCCCCCcc---------------ccCCceeccEE-Ee-CCCEEEEEEecC
Confidence            5666  777888     666678999999999874310               0001  12344 77 776665444432


Q ss_pred             ---------CCCCeEEEEEcCCCc---eEEEEecc-cCCCeEEEEecCCCCEEEEEeCCC----c--eeecCCC--cEEE
Q 016134          150 ---------DECRFLHSWFCGEGL---TMLAKLEG-HEKAVSGIALPLRSDKLFSGSRDG----T--AWNIESS--AEFS  208 (394)
Q Consensus       150 ---------~~~~~i~iWd~~~~~---~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs~Dg----~--vWd~~~~--~~~~  208 (394)
                               .....|++|++.++.   .++..... |...+..+.|+||+++|+.....+    .  +||+.++  +...
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                     233469999997663   34444444 666788999999999886544322    2  4676655  2223


Q ss_pred             ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE-EEecCCeE-EEEeC---CCeEEEEeCCCCce--eEEEcCCCCCcEEE
Q 016134          209 LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC-LAVGRSRL-CSGSM---DNTIRVWELDTLEP--VMTLNDHTDAPMSL  281 (394)
Q Consensus       209 ~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~-l~~~~~~l-~sgs~---Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l  281 (394)
                      +..+                      ...... +...++.| +....   .+.|.++|+.+++.  ...+..|...+..+
T Consensus       276 l~~~----------------------~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  333 (693)
T 3iuj_A          276 VQGD----------------------LDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTV  333 (693)
T ss_dssp             EECS----------------------SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred             EeCC----------------------CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEE
Confidence            2222                      222222 22234443 33333   36899999987654  34566666655555


Q ss_pred             EEcCCEEEEEeC-CC--cEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC---CeEEEEECCCCce
Q 016134          282 LCWDQFLLSCSL-DH--TIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND---NTVHLYELPSFME  354 (394)
Q Consensus       282 ~~~~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d---g~I~iwd~~~~~~  354 (394)
                      ...++.|+.... ++  .|++||+... ....+.. .....+.  ...+++++..++++.+..   ++|..||+.+++.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~-p~~~~~~--~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGK-RVREVAL-PGLGSVS--GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSC-EEEEECC-SSSSEEE--ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCC-eeEEeec-CCCceEE--eeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            555777766655 43  6888888643 3333321 1112222  233567877555554432   7899999987754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.76  E-value=5.1e-06  Score=79.38  Aligned_cols=189  Identities=10%  Similarity=-0.031  Sum_probs=121.1

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEE
Q 016134          175 KAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCS  250 (394)
Q Consensus       175 ~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~s  250 (394)
                      .....|+|+++++++++...++.|  ||.+++....+....                     . ... ++|+  ++.|++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------------------~-~~~-ia~~~~g~~l~~  187 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------------------K-GGK-PAVTKDKQRVYS  187 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------------------C-BCB-CEECTTSSEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------------------C-CCc-eeEecCCCcEEE
Confidence            468899999999877776666664  787776654332111                     1 111 4555  567777


Q ss_pred             EeCCC--eEEEEeCCCCceeEEE----cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE----eecccCCc
Q 016134          251 GSMDN--TIRVWELDTLEPVMTL----NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA----AYTHKEDN  318 (394)
Q Consensus       251 gs~Dg--~V~iwd~~~~~~~~~~----~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~----~~~~~~~~  318 (394)
                      +..++  .|.++|..++.....+    ......+.+++++  +..|+.+..++.|+.||.........    ...... .
T Consensus       188 ~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~-~  266 (409)
T 3hrp_A          188 IGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG-T  266 (409)
T ss_dssp             EBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC-C
T ss_pred             EecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC-C
Confidence            77765  7899998765544444    2244567788887  45666677788999999876543221    111111 1


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-C---------------CcEEEEEECCCC-EEEEEe-C
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-K---------------HEVRVIEIGPDK-LFFTGD-G  380 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~---------------~~v~~l~~sp~~-~l~tgs-~  380 (394)
                      ... -.++++|++..++++-..++.|+.|+....  ...+.. .               .....+++++++ ++++-. .
T Consensus       267 ~P~-~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          267 NPG-PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             SSC-CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             Ccc-ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            101 022358854448888888899999987643  222222 1               348899999999 777777 7


Q ss_pred             CCeEEEEeCC
Q 016134          381 AGMLGVWKLL  390 (394)
Q Consensus       381 Dg~I~vWd~~  390 (394)
                      +++|+.|++.
T Consensus       344 ~~~I~~~~~~  353 (409)
T 3hrp_A          344 GYCLRKLDIL  353 (409)
T ss_dssp             TCEEEEEETT
T ss_pred             CCEEEEEECC
Confidence            8899999954

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.76  E-value=7.9e-07  Score=90.84  Aligned_cols=81  Identities=14%  Similarity=0.037  Sum_probs=55.0

Q ss_pred             CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE--EEEEECC
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV--RVIEIGP  371 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v--~~l~~sp  371 (394)
                      ++.|+.||+.+++.+-....+..... -.+    ...+. +++.++.|+.|+.||.++++++.++.....+  .-+.|..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~-g~~----~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~  527 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNG-GTL----STAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV  527 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCC-CEE----EETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccC-ccc----eECCC-EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE
Confidence            37799999999887766554332211 122    33555 7888999999999999999999888763332  2355667


Q ss_pred             CC--EEEEEeC
Q 016134          372 DK--LFFTGDG  380 (394)
Q Consensus       372 ~~--~l~tgs~  380 (394)
                      +|  ++++.+.
T Consensus       528 ~G~qyv~~~~G  538 (689)
T 1yiq_A          528 DGEQYVTFMAG  538 (689)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEec
Confidence            88  5555543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.75  E-value=2e-06  Score=78.21  Aligned_cols=196  Identities=10%  Similarity=0.050  Sum_probs=119.4

Q ss_pred             cccCCCeEEEEecCCCCEEEE-------EeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEE
Q 016134          171 EGHEKAVSGIALPLRSDKLFS-------GSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCL  241 (394)
Q Consensus       171 ~~h~~~V~~l~~s~~~~~l~s-------gs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l  241 (394)
                      ...-....+++|++++.++++       ...++.|  ||..+++...+...                 ...++...+.++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-----------------~~~~~~~~~~~i   76 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-----------------EVNGYGGIPAGC   76 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-----------------EETTEECCEEEE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-----------------ccCCCCCCCceE
Confidence            344456789999999988887       4556654  77667665432110                 001233567788


Q ss_pred             Eec-C-CeEEEEeCCCeEEEEeCCCCceeEE-EcC----CCCCcEEEEEc--CCEEEEEeCC---------------CcE
Q 016134          242 AVG-R-SRLCSGSMDNTIRVWELDTLEPVMT-LND----HTDAPMSLLCW--DQFLLSCSLD---------------HTI  297 (394)
Q Consensus       242 ~~~-~-~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~----h~~~v~~l~~~--~~~l~s~s~D---------------g~i  297 (394)
                      +++ . ..|+.+..+..|.+||.+ ++.... ...    ....+.+++++  +.++++...+               +.|
T Consensus        77 ~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l  155 (314)
T 1pjx_A           77 QCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             EECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence            886 3 466666656689999998 665432 221    12357888887  5666665544               456


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeEC----CCCCcEEEEEeCCCeEEEEECC-CCce-----eEEEecC--CcEE
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLND----PDGKPVLICACNDNTVHLYELP-SFME-----RGRIFSK--HEVR  365 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~g~~~l~sgs~dg~I~iwd~~-~~~~-----~~~~~~~--~~v~  365 (394)
                      ..||.. ++ ...+.........    ..++    ++++.++++...++.|.+||+. ++..     ...+...  ..+.
T Consensus       156 ~~~~~~-g~-~~~~~~~~~~~~~----i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  229 (314)
T 1pjx_A          156 YCFTTD-GQ-MIQVDTAFQFPNG----IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             EEECTT-SC-EEEEEEEESSEEE----EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             EEECCC-CC-EEEeccCCCCcce----EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence            666654 33 2222222111122    2346    8886456666678999999986 4432     1111111  5688


Q ss_pred             EEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          366 VIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       366 ~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .++++++| ++++...++.|.+||..
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            99999999 66666678899999976

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=2.7e-06  Score=86.75  Aligned_cols=280  Identities=7%  Similarity=-0.071  Sum_probs=156.7

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ....|..++.|..+..+|.++++..=..+..     .....+  ..+....+..-...++.+...+...++.|+.+|..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-----~~~~~~--~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t  199 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTF-----EGQKGS--LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET  199 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETT-----TTCCSS--CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCC-----cCcCcC--cccccCcEEECCEEEEEecccccCCCCEEEEEECCC
Confidence            3455666777888999999988753100000     000000  011111101111112222111112367999999998


Q ss_pred             CceEEEEecccCC--------------------------------CeEEEEecCCCCEEEEEeCCCc-------------
Q 016134          163 GLTMLAKLEGHEK--------------------------------AVSGIALPLRSDKLFSGSRDGT-------------  197 (394)
Q Consensus       163 ~~~~~~~l~~h~~--------------------------------~V~~l~~s~~~~~l~sgs~Dg~-------------  197 (394)
                      + +.+-.+.....                                ....+++++++.+|+.+..++.             
T Consensus       200 G-~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd  278 (677)
T 1kb0_A          200 G-ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGD  278 (677)
T ss_dssp             C-CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred             C-cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCC
Confidence            8 55544433211                                1135788899999998887652             


Q ss_pred             --------eeecCCCcEEE-ecC--CCCcEEEEEEcCCEEEEEecCCCCCC-EEEEEecC---CeEEEEeCCCeEEEEeC
Q 016134          198 --------AWNIESSAEFS-LDG--PVGEVYSMVVANEMLFAGAQDGHTRP-VTCLAVGR---SRLCSGSMDNTIRVWEL  262 (394)
Q Consensus       198 --------vWd~~~~~~~~-~~~--~~~~v~~l~~~~~~l~~~~~~~h~~~-V~~l~~~~---~~l~sgs~Dg~V~iwd~  262 (394)
                              .+|.++++.+- +..  +...-              .+....+ +..+..++   ..++.++.+|.|.++|.
T Consensus       279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd--------------~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          279 NLYLASIVALDPDTGKYKWHYQETPGDNWD--------------YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDR  344 (677)
T ss_dssp             CTTTTEEEEECTTTCCEEEEEESSTTCCSC--------------CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred             CeeeEEEEEEECCCCCEEEEEecCCCcccc--------------cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEEC
Confidence                    25666666541 111  10000              0001112 22223345   57999999999999999


Q ss_pred             CCCceeEEEcCCCCC-----------c------------------------EEEEEc--CCEEEEEeC------------
Q 016134          263 DTLEPVMTLNDHTDA-----------P------------------------MSLLCW--DQFLLSCSL------------  293 (394)
Q Consensus       263 ~~~~~~~~~~~h~~~-----------v------------------------~~l~~~--~~~l~s~s~------------  293 (394)
                      ++++.+..+......           +                        ..++++  ..++++...            
T Consensus       345 ~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  424 (677)
T 1kb0_A          345 TNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKW  424 (677)
T ss_dssp             TTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTC
T ss_pred             CCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccc
Confidence            999988776522110           0                        134555  456655432            


Q ss_pred             -------------------------------CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC
Q 016134          294 -------------------------------DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN  342 (394)
Q Consensus       294 -------------------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg  342 (394)
                                                     .+.|..||+.+++.+-....... .....+    ...+. +++.++.|+
T Consensus       425 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~----~~~g~-~v~~g~~dg  498 (677)
T 1kb0_A          425 EFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP-WNGGTL----TTAGN-VVFQGTADG  498 (677)
T ss_dssp             CTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS-CCCCEE----EETTT-EEEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC-CcCcce----EeCCC-EEEEECCCC
Confidence                                           27899999998887665543221 111122    34566 677789999


Q ss_pred             eEEEEECCCCceeEEEecCCc--EEEEEECCCC--EEEEEeC----------------CCeEEEEeCC
Q 016134          343 TVHLYELPSFMERGRIFSKHE--VRVIEIGPDK--LFFTGDG----------------AGMLGVWKLL  390 (394)
Q Consensus       343 ~I~iwd~~~~~~~~~~~~~~~--v~~l~~sp~~--~l~tgs~----------------Dg~I~vWd~~  390 (394)
                      .+++||.++++.+..+.....  ..-+.+..+|  +++..+.                .+.+.+|.+.
T Consensus       499 ~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          499 RLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             cEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            999999999999988876332  2234455777  5555333                4678888775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.71  E-value=6.8e-06  Score=77.17  Aligned_cols=229  Identities=8%  Similarity=0.046  Sum_probs=135.5

Q ss_pred             CCeEEEEEcCCCceEEEEeccc---------CCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEE-EecCCCCcEEEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGH---------EKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSM  219 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h---------~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~-~~~~~~~~v~~l  219 (394)
                      ++.|..+|..++ +.+..+...         ...+.+. ...++..|+.++.++.|  +|.++++.+ ............
T Consensus        62 ~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p  139 (376)
T 3q7m_A           62 AGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP  139 (376)
T ss_dssp             TSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCeEEEEEccCC-ceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC
Confidence            458999999887 444443332         1223222 12245678888888874  888888766 222111111111


Q ss_pred             EEcCCEEEEEecCC-------CCCC----------E------EEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC
Q 016134          220 VVANEMLFAGAQDG-------HTRP----------V------TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD  276 (394)
Q Consensus       220 ~~~~~~l~~~~~~~-------h~~~----------V------~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~  276 (394)
                      ....+.+++++.++       .++.          +      ......++.++.+..++.|..+|.++++.+........
T Consensus       140 ~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~  219 (376)
T 3q7m_A          140 VVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA  219 (376)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred             EEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence            22334444444331       1111          1      11122356788888999999999999998877653211


Q ss_pred             -----------CcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEE
Q 016134          277 -----------APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVH  345 (394)
Q Consensus       277 -----------~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~  345 (394)
                                 ........+..++.++.++.|..+|.++++.+-.....    ......  .  ++. .|..++.++.|.
T Consensus       220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~--~--~~~-~l~~~~~~g~l~  290 (376)
T 3q7m_A          220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVNDFI--V--DGN-RIYLVDQNDRVM  290 (376)
T ss_dssp             ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEEEEE--E--ETT-EEEEEETTCCEE
T ss_pred             CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCCCce--E--ECC-EEEEEcCCCeEE
Confidence                       00122234778888889999999999888766443321    111111  1  234 566677899999


Q ss_pred             EEECCCCceeEEEec--CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          346 LYELPSFMERGRIFS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       346 iwd~~~~~~~~~~~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+|..+++.+.....  ...+...... ++.|+.++.+|.|.++|..+.
T Consensus       291 ~~d~~tG~~~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          291 ALTIDGGVTLWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             EEETTTCCEEEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTC
T ss_pred             EEECCCCcEEEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCC
Confidence            999999988776652  1122222332 458888999999999998764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.70  E-value=5.9e-07  Score=84.42  Aligned_cols=228  Identities=12%  Similarity=0.020  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC----------CCc--eeecCCCcEEE-ecCC-------C
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR----------DGT--AWNIESSAEFS-LDGP-------V  213 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----------Dg~--vWd~~~~~~~~-~~~~-------~  213 (394)
                      .|.+.|..+. +.+.++..-..+  .++++||+++|+.+..          ++.  +||+.+++.+. +...       .
T Consensus        47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCC-eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            7889999887 777777655566  7999999999998863          333  69999998773 2211       0


Q ss_pred             CcEEEEEEcCC--EEEEEecC-CCCCC--------EEEEEe--------c-CCeEEEEeCCCeEEEEeCCC----CceeE
Q 016134          214 GEVYSMVVANE--MLFAGAQD-GHTRP--------VTCLAV--------G-RSRLCSGSMDNTIRVWELDT----LEPVM  269 (394)
Q Consensus       214 ~~v~~l~~~~~--~l~~~~~~-~h~~~--------V~~l~~--------~-~~~l~sgs~Dg~V~iwd~~~----~~~~~  269 (394)
                      .....++++|+  .++++... ...-.        +..+..        . ...+++.+.|+.+.+.|+.+    ...+.
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            12345667776  45544322 11100        122211        1 23455566677776666654    22222


Q ss_pred             E-----EcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCc--eeeEeecc----------cCCcceEEEEeeECCCC
Q 016134          270 T-----LNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRG--NLEAAYTH----------KEDNGVLALGGLNDPDG  331 (394)
Q Consensus       270 ~-----~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~--~~~~~~~~----------~~~~~~~~~~~~~s~~g  331 (394)
                      .     +.....+.   ... +..++..+. +.|.+.|+....  .+..+...          ......+    .++|++
T Consensus       204 ~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v----~~s~dg  275 (368)
T 1mda_H          204 AQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV----AKLKNT  275 (368)
T ss_dssp             CCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE----EEETTT
T ss_pred             EEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee----EEcCCC
Confidence            1     00001121   122 445555555 778888875432  11111100          0001112    358999


Q ss_pred             CcEEEEEe-C-------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEe-CCCeEEEEeCCCC
Q 016134          332 KPVLICAC-N-------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGD-GAGMLGVWKLLAK  392 (394)
Q Consensus       332 ~~~l~sgs-~-------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs-~Dg~I~vWd~~~~  392 (394)
                      +.++++.. .       ++.+.++|+.+.+.+..+........|+|+||+  ++++.. .++.|.++|+.+.
T Consensus       276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            85555443 2       235669999999988888776689999999998  566666 5999999998764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.69  E-value=1.5e-05  Score=73.55  Aligned_cols=202  Identities=12%  Similarity=-0.031  Sum_probs=116.1

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      +.|..||..++ +. ..+. ....|.+++|+++++++++. .++. +||.++++...+.....                 
T Consensus        71 ~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~-----------------  129 (326)
T 2ghs_A           71 RELHELHLASG-RK-TVHA-LPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELES-----------------  129 (326)
T ss_dssp             TEEEEEETTTT-EE-EEEE-CSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSST-----------------
T ss_pred             CEEEEEECCCC-cE-EEEE-CCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCC-----------------
Confidence            48999999876 32 2222 34689999999999887765 4443 48877776543321110                 


Q ss_pred             CCCCCCEEEEEec--CCeEEEEeC------CCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE-eCCCcEEEE
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGSM------DNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC-SLDHTIKVW  300 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs~------Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~Dg~i~vw  300 (394)
                      ......+.++.++  ++++++...      .+.|..+|  +++.. .+..+......++|+  ++.|+.+ ..++.|.+|
T Consensus       130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~  206 (326)
T 2ghs_A          130 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV  206 (326)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence            0112345566665  344333321      24555555  44433 232233456788887  5555444 457899999


Q ss_pred             EeC--CC-cee--eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEEC-CCC
Q 016134          301 FAT--GR-GNL--EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIG-PDK  373 (394)
Q Consensus       301 d~~--~~-~~~--~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~s-p~~  373 (394)
                      |+.  ++ ...  ..+....... ...-...++++|. ++++...++.|.+||. +++.+..+.. ...+++++|+ +++
T Consensus       207 d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          207 PLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EcccccCCcccCceEEEECCCCC-CCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence            986  44 211  1121111111 1112334688998 6666666789999998 5666666554 4469999998 886


Q ss_pred             -EE-EEEeCC
Q 016134          374 -LF-FTGDGA  381 (394)
Q Consensus       374 -~l-~tgs~D  381 (394)
                       .| ++...+
T Consensus       284 ~~L~vt~~~~  293 (326)
T 2ghs_A          284 SRLLVTSARE  293 (326)
T ss_dssp             CEEEEEEBCT
T ss_pred             CEEEEEecCC
Confidence             44 444444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.69  E-value=3.3e-05  Score=72.71  Aligned_cols=217  Identities=6%  Similarity=-0.105  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC----------CCc--eeecCCCcEEEecCCCCcEEEEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR----------DGT--AWNIESSAEFSLDGPVGEVYSMVV  221 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----------Dg~--vWd~~~~~~~~~~~~~~~v~~l~~  221 (394)
                      .|.++|..++ +.+.++..-..+  .++++||+++|+.+..          ++.  ++|..+.+.+......+.      
T Consensus        48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~------  118 (373)
T 2mad_H           48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA------  118 (373)
T ss_pred             EEEEEECCCC-eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc------
Confidence            7899999887 667777654444  9999999999998863          333  688887765521110000      


Q ss_pred             cCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC--CCeEEEEeCCCCceeEE-EcCCCCCcEEEEEc-CCEEEEEeCCC
Q 016134          222 ANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM--DNTIRVWELDTLEPVMT-LNDHTDAPMSLLCW-DQFLLSCSLDH  295 (394)
Q Consensus       222 ~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~--Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~~l~s~s~Dg  295 (394)
                        ...      .+...-..+.++  +++|+++..  ++.|.++| .+++.+.+ +... ..+ .+... ...+++.+.|+
T Consensus       119 --~~~------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~-~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          119 --PRF------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCY-HIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             --ccc------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceE-EEEeCCCceEEEEcCCC
Confidence              000      000112345565  677877764  57899999 99998887 6532 222 22222 45677788899


Q ss_pred             cEEEEEeCCCceeeEeeccc--CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce--eEEEec-----------
Q 016134          296 TIKVWFATGRGNLEAAYTHK--EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--RGRIFS-----------  360 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~-----------  360 (394)
                      ++.++|. +++.........  .....+.....+.+++..+++.. .++.+.+.|+.....  +..+..           
T Consensus       188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~  265 (373)
T 2mad_H          188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence            9999999 766553322100  00111111122345554344443 678999999976532  222211           


Q ss_pred             CCcEEEEEECCCC-EEEEEeC----------CCeEEEEeCCCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDG----------AGMLGVWKLLAK  392 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~----------Dg~I~vWd~~~~  392 (394)
                      ......++++|++ .|+....          ++.|.++|+.+.
T Consensus       266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~  308 (373)
T 2mad_H          266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence            2234557899998 5555432          357999998764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.68  E-value=8.2e-09  Score=97.51  Aligned_cols=193  Identities=16%  Similarity=0.026  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecC-CCCcEEEEEEcCCEE
Q 016134          150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDG-PVGEVYSMVVANEML  226 (394)
Q Consensus       150 ~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~-~~~~v~~l~~~~~~l  226 (394)
                      +.++.|+.||..++ +.+..+..  +.+.+..+..++..+++++.|+.|  ||.++++.+.... +....          
T Consensus        16 s~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~----------   82 (369)
T 2hz6_A           16 TLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL----------   82 (369)
T ss_dssp             ETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH----------
T ss_pred             cCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc----------
Confidence            34459999999988 66666665  566666666778888888899984  8887777542211 10000          


Q ss_pred             EEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCc
Q 016134          227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                            ....++.   ..++.+++++.|+.|+.||.++++.+..+..+.. + .....+..+++++.|+.|+.||.++++
T Consensus        83 ------~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~-~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           83 ------VQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-D-SLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             ------HTTCSCC--------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             ------cccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-c-cccccCCEEEEEecCCEEEEEECCCCC
Confidence                  0011110   1245678888999999999999998887765532 1 111247788889999999999999887


Q ss_pred             eeeEeecccCCcceEEEEeeECCCC---CcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE-EEECCCC
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDG---KPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV-IEIGPDK  373 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~-l~~sp~~  373 (394)
                      .+-.+.....  ...    .+..+.   . .+++++.|+.|+.||..+++.+-......++.. ..+++++
T Consensus       152 ~~W~~~~~~~--~~~----~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          152 LRWNATYFDY--AAS----LPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREG  215 (369)
T ss_dssp             CCCEEEEEEE--CCB----CCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred             EEEeEecccc--cCc----cccCCccccc-eEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCc
Confidence            6554432211  111    123321   3 456688899999999999988877765555543 4555666

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.67  E-value=2.8e-06  Score=79.92  Aligned_cols=259  Identities=12%  Similarity=-0.004  Sum_probs=153.8

Q ss_pred             CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCceE
Q 016134           93 DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGLTM  166 (394)
Q Consensus        93 d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~~~  166 (394)
                      +.++.+-|..+....+..           ..|...  . +. ++|++.++..+..      .|+.+..|.+||..+. +.
T Consensus        58 ~~~V~ViD~~t~~v~~~I-----------~vG~~P--~-va-~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~-~v  121 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMI-----------DGGFLP--N-PV-VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LP  121 (386)
T ss_dssp             SEEEEEEETTTTEEEEEE-----------EECSSC--E-EE-ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CE
T ss_pred             CCEEEEEECCCCeEEEEE-----------ECCCCC--c-EE-ECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-eE
Confidence            567888888877754311           112221  2 55 9999998755442      2233458999999887 66


Q ss_pred             EEEeccc-------CCCeEEEEecCCCCEEEEEeC--CCc--eeecCCCcEEEecCCCCc--EE------EEEEcCC--E
Q 016134          167 LAKLEGH-------EKAVSGIALPLRSDKLFSGSR--DGT--AWNIESSAEFSLDGPVGE--VY------SMVVANE--M  225 (394)
Q Consensus       167 ~~~l~~h-------~~~V~~l~~s~~~~~l~sgs~--Dg~--vWd~~~~~~~~~~~~~~~--v~------~l~~~~~--~  225 (394)
                      +.++.-.       ...-..++|+|||++|+.+..  ++.  ++|+.+++.+......+.  ++      -+..+++  .
T Consensus       122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~  201 (386)
T 3sjl_D          122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL  201 (386)
T ss_dssp             EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE
T ss_pred             EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCE
Confidence            6665321       124567999999999998875  344  699999887632211110  11      1233444  3


Q ss_pred             EEEEecC-CCC------------CCEE-EEEec--CCeEEEEeCCCeEEEEeCCCCc--eeEEEc---------C-CCCC
Q 016134          226 LFAGAQD-GHT------------RPVT-CLAVG--RSRLCSGSMDNTIRVWELDTLE--PVMTLN---------D-HTDA  277 (394)
Q Consensus       226 l~~~~~~-~h~------------~~V~-~l~~~--~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~---------~-h~~~  277 (394)
                      +++.... ++.            ..+. ...|.  ...++..+.+|.|.+.|+.+..  .+..+.         + ....
T Consensus       202 ~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g  281 (386)
T 3sjl_D          202 AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG  281 (386)
T ss_dssp             EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred             EEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCC
Confidence            3332222 111            0110 01332  2344446678999999997654  222222         0 0112


Q ss_pred             cEEEEEc--CCEEEEEeC----------CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE-EeCCCeE
Q 016134          278 PMSLLCW--DQFLLSCSL----------DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC-ACNDNTV  344 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s-gs~dg~I  344 (394)
                      ...+.++  ++.|+....          .++|.+.|+.+.+.+..+..... ..    .+.+++|++.+|++ ...++.|
T Consensus       282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-~~----~lavs~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-ID----SINVSQDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-EC----EEEECSSSSCEEEEEETTTTEE
T ss_pred             cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-cc----eEEECCCCCeEEEEEcCCCCeE
Confidence            2234444  566665532          25799999999988887765431 12    23459999745555 4558999


Q ss_pred             EEEECCCCceeEEEecCCcEEEEEECCC
Q 016134          345 HLYELPSFMERGRIFSKHEVRVIEIGPD  372 (394)
Q Consensus       345 ~iwd~~~~~~~~~~~~~~~v~~l~~sp~  372 (394)
                      .++|..+++.+.++......+.|.+++|
T Consensus       357 sViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          357 YIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEECCCCcEEEEecCCCCCceeEECCc
Confidence            9999999999999987665566666655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=1e-05  Score=71.49  Aligned_cols=187  Identities=14%  Similarity=0.108  Sum_probs=125.9

Q ss_pred             eEEEEecccCCC--eEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          165 TMLAKLEGHEKA--VSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       165 ~~~~~l~~h~~~--V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      +.++++ .|...  ...|.|+ ++.++.+.+.+|.    +.|+++++.+.......                    ...-
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--------------------~~Fg   89 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--------------------RYFG   89 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--------------------TCCE
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--------------------ccce
Confidence            556666 45443  4789998 6777778887773    58999998763221111                    1111


Q ss_pred             EEEEecCCeEEEEe-CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          239 TCLAVGRSRLCSGS-MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       239 ~~l~~~~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      ..+++.++.|+... .++.+.+||.++.+.+.++... ..-..+++.++.|+....+++|.++|..+.+.+..+......
T Consensus        90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A           90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred             eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence            23445555554444 5889999999999999999753 333577777777777666788999999988877776653321


Q ss_pred             --cc-eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-------------CcEEEEEECCCC--EEEEE
Q 016134          318 --NG-VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-------------HEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       318 --~~-~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~sp~~--~l~tg  378 (394)
                        .. ...+.  +. +|+ +.+..-.++.|.+.|..+++.+..+...             ...+.|+++|++  +++||
T Consensus       169 ~~~~~lNELe--~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          169 EELPELNELE--WV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EECCCEEEEE--EE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccccccceeE--EE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence              11 11222  22 676 6666667889999999999988887641             246999999987  55554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=1.9e-06  Score=80.13  Aligned_cols=229  Identities=11%  Similarity=-0.009  Sum_probs=129.4

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEe-------cccCCCeEEEEecCCCCEEEEEeC-----C
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKL-------EGHEKAVSGIALPLRSDKLFSGSR-----D  195 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l-------~~h~~~V~~l~~s~~~~~l~sgs~-----D  195 (394)
                      ....++ +++.+..+++.....+  +.++||.+.++ ++ ..+       .+|...+.+|+++++++++++-..     +
T Consensus        18 ~p~~va-~~~~g~~~v~~~~~~~--~~~~l~~~~~g-~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           18 APGNIT-LTPDGRLFLSLHQFYQ--PEMQVAELTQD-GL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             CEEEEE-ECTTSCEEEEECGGGC--CSCSEEEEETT-EE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CcceEE-ECCCCCEEEEeCCCCC--CceEEEEECCC-Ce-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            445555 6666666554322111  11455554433 32 222       245678999999999876665433     3


Q ss_pred             Cc--eeecCCCcEEE-ecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeE-EEEe---CCCeEEEEeCCCCc
Q 016134          196 GT--AWNIESSAEFS-LDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRL-CSGS---MDNTIRVWELDTLE  266 (394)
Q Consensus       196 g~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l-~sgs---~Dg~V~iwd~~~~~  266 (394)
                      ..  +||+.+++.+. +.....                ...+...+..++++  +..+ ++-.   .++.|.+||+.+++
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~----------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPP----------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTT----------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             CeEEEEECCCCeEEEEEECChh----------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            44  48888887542 211100                00223345666776  3344 4444   57899999998888


Q ss_pred             eeEEEcCCC-----------------------------CCcEEEEEc--CCEEEEEeCCC-cEEEEEeC---CCce----
Q 016134          267 PVMTLNDHT-----------------------------DAPMSLLCW--DQFLLSCSLDH-TIKVWFAT---GRGN----  307 (394)
Q Consensus       267 ~~~~~~~h~-----------------------------~~v~~l~~~--~~~l~s~s~Dg-~i~vwd~~---~~~~----  307 (394)
                      ..+.+..|.                             ..+..|+++  ++.|+.+..++ .|..++..   ....    
T Consensus       157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            766664431                             124667777  66777776665 44334321   1100    


Q ss_pred             -ee--EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCC
Q 016134          308 -LE--AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGA  381 (394)
Q Consensus       308 -~~--~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~D  381 (394)
                       ..  ...........++    ++++|. ++++...++.|.+||..+++.......  ...+.+++|.+++ ++++.+..
T Consensus       237 ~~~~~~~~g~~g~pdgia----~d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGIS----IDKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             HHTTCEEEEECCSCSCEE----ECTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             hhcceEecccCCCCceEE----ECCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence             00  0111111122233    488987 888888899999999855654333322  3458999999999 66666544


Q ss_pred             C
Q 016134          382 G  382 (394)
Q Consensus       382 g  382 (394)
                      +
T Consensus       312 ~  312 (343)
T 2qe8_A          312 H  312 (343)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.63  E-value=6e-05  Score=68.31  Aligned_cols=193  Identities=9%  Similarity=0.030  Sum_probs=115.2

Q ss_pred             ecccCCCeEEEEecCCCC-EEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          170 LEGHEKAVSGIALPLRSD-KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                      +..+..-..+..|++++. ++++...++.|  ||.++++....                       .....+.+++++  
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-----------------------~~~~~~~~i~~~~d   64 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-----------------------TMDAPVSSVALRQS   64 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-----------------------ECSSCEEEEEEBTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-----------------------eCCCceEEEEECCC
Confidence            344455667889998655 45555555664  77776654322                       123456677776  


Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCC----CCCcEEEEEc--CCEEEEEeC---------CCcEEEEEeCCCceee
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDH----TDAPMSLLCW--DQFLLSCSL---------DHTIKVWFATGRGNLE  309 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s~s~---------Dg~i~vwd~~~~~~~~  309 (394)
                      ++ |+.+. +..|.+||.++++........    ...+..+.++  +.++++...         ...-.||.+.......
T Consensus        65 G~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~  142 (297)
T 3g4e_A           65 GG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK  142 (297)
T ss_dssp             SS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred             CC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence            44 44444 568999999887654322211    2346778887  665554422         2334666665433333


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC--CCCcee--EEEe---c-CCcEEEEEECCCC-EEEEEeC
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL--PSFMER--GRIF---S-KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~--~~~~~~--~~~~---~-~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      .+......  ..  ..+++|+++.++++.+.++.|.+|++  .++...  ..+.   . ...+..+++.++| +.++...
T Consensus       143 ~~~~~~~~--pn--gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~  218 (297)
T 3g4e_A          143 KYFDQVDI--SN--GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN  218 (297)
T ss_dssp             EEEEEESB--EE--EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred             EEeecccc--cc--ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence            32222111  11  23469999866677777899999997  455432  1121   1 3468899999999 6666667


Q ss_pred             CCeEEEEeCCC
Q 016134          381 AGMLGVWKLLA  391 (394)
Q Consensus       381 Dg~I~vWd~~~  391 (394)
                      .+.|.+||..+
T Consensus       219 ~~~v~~~d~~t  229 (297)
T 3g4e_A          219 GGRVIRLDPVT  229 (297)
T ss_dssp             TTEEEEECTTT
T ss_pred             CCEEEEEcCCC
Confidence            78899998764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.60  E-value=1e-05  Score=75.14  Aligned_cols=206  Identities=11%  Similarity=-0.011  Sum_probs=125.3

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeC--CC--ceeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSR--DG--TAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~--Dg--~vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      +.+..+.   ..+..|+++++|+.+++...  ++  .||.+.+++...+....               .....|...+..
T Consensus        10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~---------------~~~~~~~~~p~g   71 (343)
T 2qe8_A           10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS---------------GNAIITFDTVLG   71 (343)
T ss_dssp             EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC---------------SSCCCCCSCEEE
T ss_pred             EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc---------------cCcccceeEeeE
Confidence            4455544   68999999999999998742  34  57877644433221110               011246678889


Q ss_pred             EEec-CCeEEEEe-C-----CCeEEEEeCCCCceeEEEcCC------CCCcEEEEEc--CCEE-EEEe---CCCcEEEEE
Q 016134          241 LAVG-RSRLCSGS-M-----DNTIRVWELDTLEPVMTLNDH------TDAPMSLLCW--DQFL-LSCS---LDHTIKVWF  301 (394)
Q Consensus       241 l~~~-~~~l~sgs-~-----Dg~V~iwd~~~~~~~~~~~~h------~~~v~~l~~~--~~~l-~s~s---~Dg~i~vwd  301 (394)
                      ++++ ...|+... .     +..|.+||+++++.+..+...      ...+..++++  +..+ ++-.   .++.|.+||
T Consensus        72 v~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           72 IKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             EEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             EEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            9997 34444443 2     579999999999877766532      2346788887  3454 4444   578999999


Q ss_pred             eCCCceeeEeecccCC-------------------------cceEEEEeeECCCCCcEEEEEeCCC-eEEEEECC---CC
Q 016134          302 ATGRGNLEAAYTHKED-------------------------NGVLALGGLNDPDGKPVLICACNDN-TVHLYELP---SF  352 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~s~~g~~~l~sgs~dg-~I~iwd~~---~~  352 (394)
                      +.+++....+..+...                         .......++++|+++ .|..+..++ .|..++..   .+
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCT
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCC
Confidence            9876654443221000                         000122345799998 555555444 55555432   11


Q ss_pred             c--------eeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          353 M--------ERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       353 ~--------~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      .        .+...........++++++| ++++...++.|.+||.
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            0        01111122345678999999 7778888899999997

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.60  E-value=4.2e-06  Score=85.43  Aligned_cols=152  Identities=13%  Similarity=0.027  Sum_probs=99.4

Q ss_pred             EEec--CCeEEEEeCCC-------------------eEEEEeCCCCceeEEEcC--CC-------CCcE--EEEEcCC--
Q 016134          241 LAVG--RSRLCSGSMDN-------------------TIRVWELDTLEPVMTLND--HT-------DAPM--SLLCWDQ--  286 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg-------------------~V~iwd~~~~~~~~~~~~--h~-------~~v~--~l~~~~~--  286 (394)
                      ++++  .++++.++.++                   .|..+|.++++.+..++.  |.       ..+.  .+.+.++  
T Consensus       240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~  319 (689)
T 1yiq_A          240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR  319 (689)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE
Confidence            4454  46777777665                   499999999999887764  22       1111  2223343  


Q ss_pred             -EEEEEeCCCcEEEEEeCCCceeeEeeccc-------------------------CCcceEEE----------EeeECCC
Q 016134          287 -FLLSCSLDHTIKVWFATGRGNLEAAYTHK-------------------------EDNGVLAL----------GGLNDPD  330 (394)
Q Consensus       287 -~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-------------------------~~~~~~~~----------~~~~s~~  330 (394)
                       .++.++.+|.++++|.++++.+.......                         .....+.+          ..+++|+
T Consensus       320 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~  399 (689)
T 1yiq_A          320 KVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD  399 (689)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             EEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence             78889999999999999988764322111                         00000000          0245777


Q ss_pred             CCcEEEEEeC---------------------------------------------CCeEEEEECCCCceeEEEecCCcEE
Q 016134          331 GKPVLICACN---------------------------------------------DNTVHLYELPSFMERGRIFSKHEVR  365 (394)
Q Consensus       331 g~~~l~sgs~---------------------------------------------dg~I~iwd~~~~~~~~~~~~~~~v~  365 (394)
                      .. +|++...                                             ++.|+.||+.+++.+-++.....+.
T Consensus       400 ~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~  478 (689)
T 1yiq_A          400 TG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN  478 (689)
T ss_dssp             TT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             CC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence            76 5554421                                             3789999999999888877654444


Q ss_pred             EEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          366 VIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       366 ~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      ...+...+ +++.++.|+.|+.||..+..
T Consensus       479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          479 GGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CccceECCCEEEEECCCCcEEEEECCCCc
Confidence            33444454 99999999999999988754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.55  E-value=8.3e-06  Score=74.66  Aligned_cols=207  Identities=11%  Similarity=-0.009  Sum_probs=129.5

Q ss_pred             CCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          151 ECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       151 ~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      .++.|..+|.. + +....+..+...+.++...+++. |+.++.++.|  +|.+ ++......                 
T Consensus       115 ~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-----------------  173 (330)
T 3hxj_A          115 MDGHLYAINTD-G-TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-----------------  173 (330)
T ss_dssp             TTSEEEEECTT-S-CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-----------------
T ss_pred             cCCEEEEEcCC-C-CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-----------------
Confidence            34578888887 4 44555555566677777777776 5556666664  6665 44432110                 


Q ss_pred             EecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCc
Q 016134          229 GAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                          .....+.++..+ ...+..++  +.|..+| .+++.+..+......+.++... ...|..++.++.|..+|. +++
T Consensus       174 ----~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~  245 (330)
T 3hxj_A          174 ----TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGT  245 (330)
T ss_dssp             ----CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSC
T ss_pred             ----cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCC
Confidence                111233344453 44565666  7899999 7777777776665667777777 347777888888888874 444


Q ss_pred             eeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEE
Q 016134          307 NLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLG  385 (394)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~  385 (394)
                      .+..+...........    ..+++.  |..++.++.|..+|. +++.+..+.. ...+.++...+++.|..++.+|.++
T Consensus       246 ~~~~~~~~~~~~~~~~----~~~~g~--l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~  318 (330)
T 3hxj_A          246 EKWRFKTGKRIESSPV----IGNTDT--IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFY  318 (330)
T ss_dssp             EEEEEECSSCCCSCCE----ECTTSC--EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEE
T ss_pred             EeEEeeCCCCccccce----EcCCCe--EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEE
Confidence            4443332222122222    355665  555778889999996 6666655544 4457777887888888899999999


Q ss_pred             EEeCCCCC
Q 016134          386 VWKLLAKP  393 (394)
Q Consensus       386 vWd~~~~~  393 (394)
                      +...+.++
T Consensus       319 ~~~~~~~~  326 (330)
T 3hxj_A          319 ALFNLEHH  326 (330)
T ss_dssp             EEEC----
T ss_pred             EEeccccc
Confidence            98876554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.55  E-value=3.3e-05  Score=67.65  Aligned_cols=187  Identities=14%  Similarity=0.075  Sum_probs=125.4

Q ss_pred             eEEEEecccC--CCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCE
Q 016134          165 TMLAKLEGHE--KAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPV  238 (394)
Q Consensus       165 ~~~~~l~~h~--~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V  238 (394)
                      +.+.++ .|.  .-...|.|+. +.++.+.+.+|.    +.|+++++.+........                    ..-
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------------~fg   67 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------------YFG   67 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------------CCE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------------cce
Confidence            566666 565  3466899986 666777777663    589999987742211110                    111


Q ss_pred             EEEEecCCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          239 TCLAVGRSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       239 ~~l~~~~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      ..+++.++.| +..-.++.+.+||.++.+.+.++... ..-..++..++.|+.+..+++|.++|..+.+.+..+......
T Consensus        68 eGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g  146 (243)
T 3mbr_X           68 AGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG  146 (243)
T ss_dssp             EEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             eEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence            2334444444 44456899999999999999999743 344677777776666667899999999988777776654321


Q ss_pred             c---ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--------------CcEEEEEECCCC--EEEEE
Q 016134          318 N---GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--------------HEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       318 ~---~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~~--~l~tg  378 (394)
                      .   ....+.  + .+|+ +++..-.+..|.+.|..+++.+..+...              .-.+.|+++|++  +++||
T Consensus       147 ~~~~~lNeLe--~-~~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          147 RPLDNLNELE--W-VNGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EECCCEEEEE--E-ETTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeeE--E-eCCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            1   112222  1 2666 6666657889999999999988887631              247999999987  55555

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.53  E-value=2.6e-05  Score=69.00  Aligned_cols=186  Identities=15%  Similarity=0.150  Sum_probs=125.6

Q ss_pred             eEEEEecccCC--CeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEE
Q 016134          165 TMLAKLEGHEK--AVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTC  240 (394)
Q Consensus       165 ~~~~~l~~h~~--~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~  240 (394)
                      +.+.++ .|..  -...|.|+ ++.++.+.+.++.  +.|+++++.+... ..         +           ...-..
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---------~-----------~~FgeG  100 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL---------G-----------NIFAEG  100 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---------T-----------TCCEEE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---------C-----------CcceeE
Confidence            445555 3443  34788887 4566777777777  4888888765321 11         1           111123


Q ss_pred             EEecCCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcc
Q 016134          241 LAVGRSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG  319 (394)
Q Consensus       241 l~~~~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  319 (394)
                      +++.++. .+..-.++.+.+||.++.+.+.++... ..-..+++.++.|+.+..+++|.++|..+.+.+..+........
T Consensus       101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~  179 (268)
T 3nok_A          101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP  179 (268)
T ss_dssp             EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence            4555444 444456899999999999999999743 34467778888888877789999999998887777665432211


Q ss_pred             ---eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC--------------CcEEEEEECCCC--EEEEE
Q 016134          320 ---VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK--------------HEVRVIEIGPDK--LFFTG  378 (394)
Q Consensus       320 ---~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp~~--~l~tg  378 (394)
                         ...+.  +. +|+ +++..-.++.|.+.|..+++.+..+...              .-.+.||++|++  +++||
T Consensus       180 v~~lNeLe--~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          180 VELINELE--CA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CCCEEEEE--EE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccccccE--Ee-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence               12222  22 676 6666667889999999999988887641              357999999987  66665

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.50  E-value=2.8e-08  Score=93.86  Aligned_cols=141  Identities=11%  Similarity=0.106  Sum_probs=78.6

Q ss_pred             ecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcce
Q 016134          243 VGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGV  320 (394)
Q Consensus       243 ~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  320 (394)
                      ..++.+++++.|+.|+.||.++++.+.+++.  +.+.+..+.  +..+++++.|+.|+.||..+++.+..+....... .
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~   83 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-V   83 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH-H
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-c
Confidence            4578999999999999999999999988875  444333222  5577777899999999998877655443221100 0


Q ss_pred             EEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          321 LALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       321 ~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      . ...... .+. .|++++.|+.|+.||..+++.+..+.....   ..++|++ .|++++.|+.|+.||..+.
T Consensus        84 ~-~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           84 Q-ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             T-TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSS
T ss_pred             c-cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCC
Confidence            0 000011 233 567788899999999999988766654332   3455666 8889999999999998764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.48  E-value=0.00014  Score=67.02  Aligned_cols=186  Identities=9%  Similarity=-0.046  Sum_probs=105.9

Q ss_pred             CeEEEEecCCCC-EEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEE
Q 016134          176 AVSGIALPLRSD-KLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSG  251 (394)
Q Consensus       176 ~V~~l~~s~~~~-~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sg  251 (394)
                      -..+.+|+|++. ++++...++.|  ||.++++...+.                       ....+.++.++ ...++.+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-----------------------~~~~v~~i~~~~dg~l~v~  106 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-----------------------LPFMGSALAKISDSKQLIA  106 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-----------------------CSSCEEEEEEEETTEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-----------------------CCCcceEEEEeCCCeEEEE
Confidence            356788999754 45555555664  676666543221                       12356667765 3334444


Q ss_pred             eCCCeEEEEeCCCCceeEEEcC---C-CCCcEEEEEc--CCEEEEEeCC----CcEEEEEeCCCceeeEeecccCCcceE
Q 016134          252 SMDNTIRVWELDTLEPVMTLND---H-TDAPMSLLCW--DQFLLSCSLD----HTIKVWFATGRGNLEAAYTHKEDNGVL  321 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~~~~~---h-~~~v~~l~~~--~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~  321 (394)
                      +.+ .|.+||.++++.......   . ...+..+.++  +.++++...+    ....||.+.+++ ...+.....  ...
T Consensus       107 ~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~--~~~  182 (326)
T 2ghs_A          107 SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADIS--IPN  182 (326)
T ss_dssp             ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEES--SEE
T ss_pred             ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCc--ccC
Confidence            444 499999988775433221   1 1346788887  5655544321    223444443333 333222111  111


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECC--CC-ce--eEEEe----cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELP--SF-ME--RGRIF----SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--~~-~~--~~~~~----~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                        ..+++|+++.++++...++.|.+||+.  ++ ..  ...+.    ....+..+++.++| +.++...++.|.+|+..
T Consensus       183 --~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          183 --SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             --EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             --CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence              234699998555666677899999986  55 31  11121    13457889999999 55555567889999863

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.41  E-value=2.2e-05  Score=79.96  Aligned_cols=137  Identities=9%  Similarity=-0.018  Sum_probs=92.9

Q ss_pred             eEEEEeCCCCceeEEEcC--CC-------CCcEEEE--EcC---CEEEEEeCCCcEEEEEeCCCceeeEeecccCC----
Q 016134          256 TIRVWELDTLEPVMTLND--HT-------DAPMSLL--CWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKED----  317 (394)
Q Consensus       256 ~V~iwd~~~~~~~~~~~~--h~-------~~v~~l~--~~~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~----  317 (394)
                      .|..+|.++++.+..++.  |.       ....-+.  ..+   ..++.++.+|.|.++|.++++.+..+......    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            599999999999877653  21       1122222  235   67889999999999999999877655422100    


Q ss_pred             ---cceEE------------------------EEeeECCCCCcEEEEEeC------------------------------
Q 016134          318 ---NGVLA------------------------LGGLNDPDGKPVLICACN------------------------------  340 (394)
Q Consensus       318 ---~~~~~------------------------~~~~~s~~g~~~l~sgs~------------------------------  340 (394)
                         .....                        -..+++|+.. ++++...                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccccccccccc
Confidence               00000                        0124578877 5555432                              


Q ss_pred             -------------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          341 -------------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       341 -------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                                   .+.|..||+.+++.+-++.....+....+..++ +++.++.||.+++||+.+..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                         278999999999988887765555555555555 88889999999999998753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.39  E-value=1.5e-05  Score=74.85  Aligned_cols=254  Identities=7%  Similarity=-0.079  Sum_probs=147.7

Q ss_pred             cccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec------CCCCCeEEEEEcCCCceEEE
Q 016134           95 IPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR------GDECRFLHSWFCGEGLTMLA  168 (394)
Q Consensus        95 ~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~------g~~~~~i~iWd~~~~~~~~~  168 (394)
                      ++-+.|.++....+.           ...|.. .  .+. ++|++.++..+...      |..+.+|.+||..+. +.+.
T Consensus        47 ~vsvID~~t~~v~~~-----------i~vG~~-P--~i~-~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~  110 (368)
T 1mda_H           47 ENWVSCAGCGVTLGH-----------SLGAFL-S--LAV-AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIA  110 (368)
T ss_dssp             EEEEEETTTTEEEEE-----------EEECTT-C--EEE-ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEE
T ss_pred             eEEEEECCCCeEEEE-----------EeCCCC-C--ceE-ECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEE
Confidence            566888887776431           222322 1  455 89998887655532      345679999999988 6677


Q ss_pred             Eeccc-------CCCeEEEEecCCCCEEEEEeCC--Cc--e--eecCCCcEEEecCC-----CCcEEEEEEcCC-EEEEE
Q 016134          169 KLEGH-------EKAVSGIALPLRSDKLFSGSRD--GT--A--WNIESSAEFSLDGP-----VGEVYSMVVANE-MLFAG  229 (394)
Q Consensus       169 ~l~~h-------~~~V~~l~~s~~~~~l~sgs~D--g~--v--Wd~~~~~~~~~~~~-----~~~v~~l~~~~~-~l~~~  229 (394)
                      ++.-+       -.....++|+|||++|+.+...  ..  +  +|..+-..+...+.     .+.-.-+.++++ .++..
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~v  190 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEE
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEE
Confidence            76533       1345689999999999998753  22  5  78766111111110     000001222222 11111


Q ss_pred             ecCC------C------------CCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc--eeEEEcCC----------CCCcE
Q 016134          230 AQDG------H------------TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE--PVMTLNDH----------TDAPM  279 (394)
Q Consensus       230 ~~~~------h------------~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~--~~~~~~~h----------~~~v~  279 (394)
                      ..+.      +            ..+. . ...+..++..+. +.|.+.|+.+.+  .+..+...          .....
T Consensus       191 d~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  267 (368)
T 1mda_H          191 DLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred             ECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence            1111      0            0111 1 112455555556 899999986532  22222110          01111


Q ss_pred             EEEEc--CCEEEEEeC---------CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEE
Q 016134          280 SLLCW--DQFLLSCSL---------DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLY  347 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iw  347 (394)
                      .+.++  ++.++.+..         +..+.++|+.+.+.+..+.....     ...+.++||++.++++.. .++.|.++
T Consensus       268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~-----p~gi~~s~Dg~~l~va~~~~~~~VsVI  342 (368)
T 1mda_H          268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-----SDAIIAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE-----ECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC-----cceEEECCCCCEEEEEccCCCCeEEEE
Confidence            13454  666665432         23566999999888777664432     223346999987777777 69999999


Q ss_pred             ECCCCceeEEEecCCcEEEEEECCC
Q 016134          348 ELPSFMERGRIFSKHEVRVIEIGPD  372 (394)
Q Consensus       348 d~~~~~~~~~~~~~~~v~~l~~sp~  372 (394)
                      |+.+++.+..+........+++.+.
T Consensus       343 D~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          343 DAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             ESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             ECCCCcEEEEEECCCCCCEEEeecC
Confidence            9999999988887666777777653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.38  E-value=3e-05  Score=70.88  Aligned_cols=139  Identities=14%  Similarity=0.014  Sum_probs=91.4

Q ss_pred             EEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecccCC
Q 016134          240 CLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED  317 (394)
Q Consensus       240 ~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  317 (394)
                      ++... ...++.++.++.|..+|.. ++.+..+......+.++... +..|..++  +.|..+| .+++...........
T Consensus       141 ~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~  216 (330)
T 3hxj_A          141 TPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWT  216 (330)
T ss_dssp             CCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCC
T ss_pred             eeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcc
Confidence            33444 5567788888999999998 88777776555667777775 44455555  7899999 665555444332222


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC-CcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK-HEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                      ...+.    .++++.  |..++.++.|..+|. +++.+..+... ..+..+.+.+++.|..++.++.|..+|.
T Consensus       217 ~~~~~----~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          217 VTRPA----ISEDGT--IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CSCCE----ECTTSC--EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred             eeceE----ECCCCe--EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence            22232    367776  444667888998874 55555555442 2244566666778888889988988885

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.29  E-value=9.6e-05  Score=70.59  Aligned_cols=244  Identities=11%  Similarity=0.014  Sum_probs=144.9

Q ss_pred             CcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCceEE
Q 016134           94 RIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGLTML  167 (394)
Q Consensus        94 ~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~~~~  167 (394)
                      .++.+.|.++.......           ..|.. .  .+. ++|++.++..+..      .|..+..|.++|..+. +.+
T Consensus        99 ~~VsVID~~t~~vv~~I-----------~vG~~-P--gia-~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-~vv  162 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMT-----------DGGFL-P--HPV-AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-LPI  162 (426)
T ss_dssp             EEEEEEETTTTEEEEEE-----------EECSS-C--EEE-ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEE
T ss_pred             CeEEEEECCCCEEEEEE-----------ECCCC-C--ceE-ECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-cEE
Confidence            67888888887764311           12222 2  455 8999988765543      2234558999999887 556


Q ss_pred             EEeccc-------CCCeEEEEecCCCCEEEEEeCC--Cc--eeecCCCcEEEecCCCCc--------EEEEEEcCC--EE
Q 016134          168 AKLEGH-------EKAVSGIALPLRSDKLFSGSRD--GT--AWNIESSAEFSLDGPVGE--------VYSMVVANE--ML  226 (394)
Q Consensus       168 ~~l~~h-------~~~V~~l~~s~~~~~l~sgs~D--g~--vWd~~~~~~~~~~~~~~~--------v~~l~~~~~--~l  226 (394)
                      .++.--       ......++|+||+++|+.+...  +.  +.|+.+++.+......+.        -.-+.++++  .+
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEE
Confidence            555321       1345678999999999998753  44  688888887632211111        111344444  33


Q ss_pred             EEEecCCCCC------------CE-EEEEec--CCeEEEEeCCCeEEEEeCCCCcee--EEEcC---C-------CCCcE
Q 016134          227 FAGAQDGHTR------------PV-TCLAVG--RSRLCSGSMDNTIRVWELDTLEPV--MTLND---H-------TDAPM  279 (394)
Q Consensus       227 ~~~~~~~h~~------------~V-~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~--~~~~~---h-------~~~v~  279 (394)
                      ++....++..            ++ ..+.+.  +..++..+..+.|.+.|+......  ..+..   .       .....
T Consensus       243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred             EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence            3332111111            00 012233  455566667889999998654321  11110   0       01111


Q ss_pred             EEEEc--CCEEEEEeC----------CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEE
Q 016134          280 SLLCW--DQFLLSCSL----------DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHL  346 (394)
Q Consensus       280 ~l~~~--~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~i  346 (394)
                      .+.++  ++.+++...          ++.|.++|+.+.+.+..+....     ....+.++|+++.++++.. .++.|.+
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence            23454  565555432          3579999999998888776433     2233346999984555555 6999999


Q ss_pred             EECCCCceeEEE
Q 016134          347 YELPSFMERGRI  358 (394)
Q Consensus       347 wd~~~~~~~~~~  358 (394)
                      +|+.+++.+..+
T Consensus       398 ID~~t~kvv~tI  409 (426)
T 3c75_H          398 YDAATGEELRSV  409 (426)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            999999999887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.29  E-value=0.00074  Score=64.31  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             CeEEEEeCCCCceeEEEcCCCC---CcEEEEEc--CCEEEEEe-------------------CCCcEEEEEeCCCceeeE
Q 016134          255 NTIRVWELDTLEPVMTLNDHTD---APMSLLCW--DQFLLSCS-------------------LDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~---~v~~l~~~--~~~l~s~s-------------------~Dg~i~vwd~~~~~~~~~  310 (394)
                      +.|.++|.++++.+.+++....   .-+.+.|+  ++.+++..                   .+.+|.+||+.+.+.+..
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            7899999999999998863222   23446555  67777764                   368999999998766666


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEe-----CCCeEEEEECCCCcee--EEE--ec-----------------CCcE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICAC-----NDNTVHLYELPSFMER--GRI--FS-----------------KHEV  364 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-----~dg~I~iwd~~~~~~~--~~~--~~-----------------~~~v  364 (394)
                      +...........+...|+|+++..+++.-     .+++|.+|....+...  ..+  ..                 ...+
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            55432222333344456999995556555     7789988776554211  111  11                 1347


Q ss_pred             EEEEECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          365 RVIEIGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       365 ~~l~~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      ..|.+++|+  ++++.-..+.|.+||+..
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            889999999  455555678999999863

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.27  E-value=0.0022  Score=66.47  Aligned_cols=227  Identities=10%  Similarity=0.080  Sum_probs=141.5

Q ss_pred             EEEEEcCCCceEEEEecc-------cCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecC--------CCCcEEE
Q 016134          155 LHSWFCGEGLTMLAKLEG-------HEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDG--------PVGEVYS  218 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~~-------h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~--------~~~~v~~  218 (394)
                      |.+||..++ +.......       ....|.+|...+++.+.+.. .+|. +||..++....+..        ....|.+
T Consensus       237 l~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~  314 (795)
T 4a2l_A          237 LFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRS  314 (795)
T ss_dssp             EEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred             eEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CChhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence            778887665 32222211       13579999999888765544 4575 58887776554321        2356888


Q ss_pred             EEEcCC-EEEEEecC----------------C--------CCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEc
Q 016134          219 MVVANE-MLFAGAQD----------------G--------HTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLN  272 (394)
Q Consensus       219 l~~~~~-~l~~~~~~----------------~--------h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~  272 (394)
                      +....+ .+.+|+.+                .        ....|.++..+ ...|..|+.++-|..||..+++......
T Consensus       315 i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~  394 (795)
T 4a2l_A          315 IFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTL  394 (795)
T ss_dssp             EEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECC
T ss_pred             EEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEec
Confidence            888766 66666643                0        13458888887 5568888888889999988765433221


Q ss_pred             C--------CCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc---CCcceEEEEeeECCCCCcEEEEEe
Q 016134          273 D--------HTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK---EDNGVLALGGLNDPDGKPVLICAC  339 (394)
Q Consensus       273 ~--------h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~l~sgs  339 (394)
                      .        ....|.++..+  +.+|..|..++-|.++|..+++... +....   ....+.++  ..++++. +.+ |+
T Consensus       395 ~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i--~~d~~g~-lwi-gt  469 (795)
T 4a2l_A          395 QEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAI--LPDGEGN-LWL-GT  469 (795)
T ss_dssp             C------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEE--EECSSSC-EEE-EE
T ss_pred             CCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEE--EECCCCC-EEE-Ee
Confidence            1        23568888876  4437888887889999987654322 22111   11223333  3567777 444 44


Q ss_pred             CCCeEEEEECCCCceeEEEe-------cCCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          340 NDNTVHLYELPSFMERGRIF-------SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       340 ~dg~I~iwd~~~~~~~~~~~-------~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      . +-|.+||..+++......       ....|.++...+++.|..|+. +-|..|+..
T Consensus       470 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~  525 (795)
T 4a2l_A          470 L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQE  525 (795)
T ss_dssp             S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEE
T ss_pred             c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCC
Confidence            4 458889988764332211       125699999999985555666 457777754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.26  E-value=0.00043  Score=65.93  Aligned_cols=208  Identities=13%  Similarity=0.057  Sum_probs=121.0

Q ss_pred             CCCeEEEEEcCCC---ceEEEEec------c-cCCCeEEEEecCCCCEEEEEeCC------Cc--eeecCCCcEEEecCC
Q 016134          151 ECRFLHSWFCGEG---LTMLAKLE------G-HEKAVSGIALPLRSDKLFSGSRD------GT--AWNIESSAEFSLDGP  212 (394)
Q Consensus       151 ~~~~i~iWd~~~~---~~~~~~l~------~-h~~~V~~l~~s~~~~~l~sgs~D------g~--vWd~~~~~~~~~~~~  212 (394)
                      .+..|+|.|+.+.   .+...+++      . -...-..+...|+| .++++..+      +.  +.|.++.+.+.....
T Consensus       104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~  182 (462)
T 2ece_A          104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI  182 (462)
T ss_dssp             TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred             CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence            3458999998533   35566653      0 11234567788999 77776655      22  578887777643221


Q ss_pred             C----CcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEe-------------------CCCeEEEEeCCCCceeE
Q 016134          213 V----GEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS-------------------MDNTIRVWELDTLEPVM  269 (394)
Q Consensus       213 ~----~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs-------------------~Dg~V~iwd~~~~~~~~  269 (394)
                      .    .--+.+.|+|+                    ++.+++..                   .+.+|.+||+.+++.++
T Consensus       183 ~~~~~~~~Yd~~~~p~--------------------~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          183 DRGDQYLAYDFWWNLP--------------------NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             BCTTCCCCCCEEEETT--------------------TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             CCCCccccceEEECCC--------------------CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence            1    11112222222                    34444442                   47899999999998888


Q ss_pred             EEcCCC--CCcEEEEE--c--CCEEEEEe------CCCcEEEEEeCCCce--eeEe--eccc--CC----------cceE
Q 016134          270 TLNDHT--DAPMSLLC--W--DQFLLSCS------LDHTIKVWFATGRGN--LEAA--YTHK--ED----------NGVL  321 (394)
Q Consensus       270 ~~~~h~--~~v~~l~~--~--~~~l~s~s------~Dg~i~vwd~~~~~~--~~~~--~~~~--~~----------~~~~  321 (394)
                      ++..-.  .....+.|  +  ++++++++      .+++|.+|....++.  .+.+  ....  ..          ....
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence            886521  23455656  4  66666555      567888776654321  1111  1100  00          0011


Q ss_pred             EEEeeECCCCCcEEEEEeCCCeEEEEECCC---CceeEEEecCC---------------cEEEEEECCCC-EEEEEe
Q 016134          322 ALGGLNDPDGKPVLICACNDNTVHLYELPS---FMERGRIFSKH---------------EVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       322 ~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~---~~~~~~~~~~~---------------~v~~l~~sp~~-~l~tgs  379 (394)
                      ...+.+++|++.+.++.-..+.|.+||+..   .+.+..+...+               ....++++||| +|+.+.
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            222345999996666666689999999863   34555554431               36889999999 666666

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.18  E-value=0.00021  Score=72.55  Aligned_cols=80  Identities=9%  Similarity=0.026  Sum_probs=51.3

Q ss_pred             CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE--EEEEECC
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV--RVIEIGP  371 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v--~~l~~sp  371 (394)
                      ++.|..||+.+++.+-.......... ..+    ...+. +++.++.|+.|+.||.++++.+..+.....+  .-+.+..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~-~~~----~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~  510 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNG-GTL----STAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCC-CEE----EETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcC-cee----EeCCC-EEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence            47899999999887655543322111 112    22455 7888899999999999999998888663322  1223334


Q ss_pred             CC--EEEEEe
Q 016134          372 DK--LFFTGD  379 (394)
Q Consensus       372 ~~--~l~tgs  379 (394)
                      +|  +++.++
T Consensus       511 ~G~~yva~~~  520 (668)
T 1kv9_A          511 AGRQYVAIMA  520 (668)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            66  555554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.16  E-value=0.0001  Score=67.08  Aligned_cols=148  Identities=10%  Similarity=-0.035  Sum_probs=94.2

Q ss_pred             CCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          236 RPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       236 ~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .......|+  ++ ++++...++.|..|+. +++ +..+..+...+..+.++  ++++++...++.|.+||.. ++ ...
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~  120 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHL  120 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEE
Confidence            345566775  45 6777788899999998 444 34455566778889988  5655544456789999875 33 333


Q ss_pred             eecccCC---cceEEEEeeECCCCCcEEEE----EeC-------------CCeEEEEECCCCceeEEEecCCcEEEEEEC
Q 016134          311 AYTHKED---NGVLALGGLNDPDGKPVLIC----ACN-------------DNTVHLYELPSFMERGRIFSKHEVRVIEIG  370 (394)
Q Consensus       311 ~~~~~~~---~~~~~~~~~~s~~g~~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~s  370 (394)
                      +......   ....  .+.++++|. ++++    |..             .+.|..||..+++..... .......++|+
T Consensus       121 ~~~~~~~~~~~~~~--~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          121 LVGRYAGKRLNSPN--DLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS  196 (305)
T ss_dssp             EECEETTEECSCCC--CEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred             EEeccCCCccCCCC--CEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence            2221111   1111  123589998 7775    322             256788887666544333 44467889999


Q ss_pred             CCC-EEEEEeCC------CeEEEEeCCC
Q 016134          371 PDK-LFFTGDGA------GMLGVWKLLA  391 (394)
Q Consensus       371 p~~-~l~tgs~D------g~I~vWd~~~  391 (394)
                      ||+ .|+.+...      +.|.+|++..
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            999 66666554      7899998753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.13  E-value=0.00018  Score=63.62  Aligned_cols=147  Identities=12%  Similarity=0.015  Sum_probs=102.5

Q ss_pred             CCEEEEEecCC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-cEEEEEcCC-EEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          236 RPVTCLAVGRS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDA-PMSLLCWDQ-FLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       236 ~~V~~l~~~~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      .....|.|+++ ++.+.+.+|.|+++|+++++.+.++ ..... -..+.+.++ +.+..-.++.+.+||..+.+.+.++.
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            44577888754 5667777889999999999988887 32222 244777754 44445568999999999988888877


Q ss_pred             cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC------CcEEEEEECCCC-EEEEEeCCCeEE
Q 016134          313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK------HEVRVIEIGPDK-LFFTGDGAGMLG  385 (394)
Q Consensus       313 ~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------~~v~~l~~sp~~-~l~tgs~Dg~I~  385 (394)
                      ...+   ...+    .++++ .|+.+..++.|.++|..+.+.+..+.-.      ..++.+.|. +| +++..-.+..|.
T Consensus       134 ~~~e---GwGL----t~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          134 YSGE---GWGL----CYWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             CSSC---CCCE----EEETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             CCCc---eeEE----ecCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence            5332   1223    24666 4444556899999999999988877651      246778887 66 444444677888


Q ss_pred             EEeCCCC
Q 016134          386 VWKLLAK  392 (394)
Q Consensus       386 vWd~~~~  392 (394)
                      +.|..+.
T Consensus       205 vIDp~TG  211 (268)
T 3nok_A          205 EIDPATG  211 (268)
T ss_dssp             EECTTTC
T ss_pred             EEeCCCC
Confidence            8887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.11  E-value=0.0042  Score=54.90  Aligned_cols=212  Identities=10%  Similarity=-0.003  Sum_probs=118.6

Q ss_pred             eEEEEEcCCCceE----EEEecccCCCeEEEEecCCCCEEEEEeC-CCce--eecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          154 FLHSWFCGEGLTM----LAKLEGHEKAVSGIALPLRSDKLFSGSR-DGTA--WNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       154 ~i~iWd~~~~~~~----~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      .|+.+++......    ...+......+..++|++++..|+.+.. ++.|  ++.+......+..               
T Consensus        11 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---------------   75 (267)
T 1npe_A           11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---------------   75 (267)
T ss_dssp             EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---------------
T ss_pred             eEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE---------------
Confidence            5777777544210    1122222346789999997766665554 4444  5554433221110               


Q ss_pred             EEEecCCCCCCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC---CCcEE
Q 016134          227 FAGAQDGHTRPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL---DHTIK  298 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---Dg~i~  298 (394)
                            ........++++  ++.| ++-...+.|.++++........+.........++++  +..|+.+..   .+.|.
T Consensus        76 ------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           76 ------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             ------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred             ------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence                  111345666765  3444 444556789999987533222222222456888887  466655554   36788


Q ss_pred             EEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEE
Q 016134          299 VWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       299 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~t  377 (394)
                      .+++.. .....+... ......  .+++++++..++++-...+.|.++|+........+........++.. ++ ++++
T Consensus       150 ~~~~dg-~~~~~~~~~-~~~~P~--gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva  224 (267)
T 1npe_A          150 TSHMDG-TNRRILAQD-NLGLPN--GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYT  224 (267)
T ss_dssp             EEETTS-CCCEEEECT-TCSCEE--EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEE
T ss_pred             EEecCC-CCcEEEEEC-CCCCCc--EEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEE
Confidence            888753 222222211 111222  23458877757777777889999999765433333333445677765 44 5555


Q ss_pred             EeCCCeEEEEeCCC
Q 016134          378 GDGAGMLGVWKLLA  391 (394)
Q Consensus       378 gs~Dg~I~vWd~~~  391 (394)
                      ....+.|.++|..+
T Consensus       225 ~~~~~~v~~~d~~~  238 (267)
T 1npe_A          225 DWKTNSVIAMDLAI  238 (267)
T ss_dssp             ETTTTEEEEEETTT
T ss_pred             ECCCCeEEEEeCCC
Confidence            55678899998764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.08  E-value=0.004  Score=64.46  Aligned_cols=232  Identities=10%  Similarity=0.025  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCceEEEE-ecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecC--------CCCcEEEEEEcC
Q 016134          154 FLHSWFCGEGLTMLAK-LEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDG--------PVGEVYSMVVAN  223 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~-l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~--------~~~~v~~l~~~~  223 (394)
                      -|..|+..++ +.... ...+...|.+|...+++.+.+....+|. +||..+++......        ....|.++...+
T Consensus       194 Gl~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  272 (795)
T 4a2l_A          194 GLYTYSITQK-TFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS  272 (795)
T ss_dssp             CEEEEETTTC-CEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred             CEEEEeCCCC-eEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC
Confidence            3677887654 22221 1124567999998888776665545565 58877766554322        235688888775


Q ss_pred             C-EEEEEecCC------------------------CCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcC----
Q 016134          224 E-MLFAGAQDG------------------------HTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLND----  273 (394)
Q Consensus       224 ~-~l~~~~~~~------------------------h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~----  273 (394)
                      + .+.+|+..+                        ....|.++..+ ...|..|+.++-|..|+..+.+. ..+..    
T Consensus       273 ~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~  351 (795)
T 4a2l_A          273 QNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF-KNIRNIPYK  351 (795)
T ss_dssp             TSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS-EEECCCTTS
T ss_pred             CCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc-eEEcCCCCC
Confidence            5 555555331                        12468888887 56688888888899998765442 22221    


Q ss_pred             ---CCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecc------cCCcceEEEEeeECCCCCcEEEEEeCCCe
Q 016134          274 ---HTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTH------KEDNGVLALGGLNDPDGKPVLICACNDNT  343 (394)
Q Consensus       274 ---h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~s~~g~~~l~sgs~dg~  343 (394)
                         ....|.++..+ ...|..|..++-|..||..++.........      .....+.++  ..++++. +|..|+.++-
T Consensus       352 ~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~-~lWigt~~~G  428 (795)
T 4a2l_A          352 NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV--YVDEKKS-LVYIGTHAGG  428 (795)
T ss_dssp             SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE--EEETTTT-EEEEEETTTE
T ss_pred             CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE--EEcCCCC-EEEEEeCcCc
Confidence               23468888887 456777888878999997655432221111      011233333  3456676 4666777788


Q ss_pred             EEEEECCCCceeEEEe-----cCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          344 VHLYELPSFMERGRIF-----SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       344 I~iwd~~~~~~~~~~~-----~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      |.+||..+++......     ....|.++...+++.|..|+.+ -|.+|+..+
T Consensus       429 l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~  480 (795)
T 4a2l_A          429 LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQ  480 (795)
T ss_dssp             EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTT
T ss_pred             eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCC
Confidence            9999998765432221     1356999999888866666664 477787654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.07  E-value=0.00079  Score=59.88  Aligned_cols=148  Identities=11%  Similarity=-0.016  Sum_probs=104.2

Q ss_pred             CEEEEEecC-CeEEEEeC---CCeEEEEeCCCCceeEEEcCCCC-CcEEEEEcCCEEEEEe-CCCcEEEEEeCCCceeeE
Q 016134          237 PVTCLAVGR-SRLCSGSM---DNTIRVWELDTLEPVMTLNDHTD-APMSLLCWDQFLLSCS-LDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       237 ~V~~l~~~~-~~l~sgs~---Dg~V~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~l~s~s-~Dg~i~vwd~~~~~~~~~  310 (394)
                      ....|.|++ ..|+.++.   ++.|+++|+.+++.+.++..... ....+++.++.|+... .++.+.++|..+.+.+..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            457788875 56655542   58999999999999988753222 2346777776665555 578999999998888877


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC------CcEEEEEECCCC-EEEEEeCCCe
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK------HEVRVIEIGPDK-LFFTGDGAGM  383 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------~~v~~l~~sp~~-~l~tgs~Dg~  383 (394)
                      +... .+. ...+    +++++.++++ ..++.|.++|..+.+.+..+.-.      ..++.+.|. ++ .++....++.
T Consensus       102 i~~g-~~~-g~gl----t~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          102 FTHQ-MKD-GWGL----ATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EECC-SSS-CCEE----EECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EECC-CCC-eEEE----EECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence            6543 122 2333    4577755554 46889999999999888887642      137788888 77 5555556789


Q ss_pred             EEEEeCCCC
Q 016134          384 LGVWKLLAK  392 (394)
Q Consensus       384 I~vWd~~~~  392 (394)
                      |.+.|..+.
T Consensus       174 V~vID~~tg  182 (266)
T 2iwa_A          174 IARISAKDG  182 (266)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            999998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.07  E-value=0.00023  Score=70.08  Aligned_cols=197  Identities=11%  Similarity=0.025  Sum_probs=116.6

Q ss_pred             CCCCEEEEEeCCCc---eeecCCCcEEEec--CCCCcEEEEEE-c-CC--EEEEEecCCCCCCEEEEEecCCeEEE-EeC
Q 016134          184 LRSDKLFSGSRDGT---AWNIESSAEFSLD--GPVGEVYSMVV-A-NE--MLFAGAQDGHTRPVTCLAVGRSRLCS-GSM  253 (394)
Q Consensus       184 ~~~~~l~sgs~Dg~---vWd~~~~~~~~~~--~~~~~v~~l~~-~-~~--~l~~~~~~~h~~~V~~l~~~~~~l~s-gs~  253 (394)
                      +||++|+....+..   +-|+++.++..+.  ........+++ . |+  +++++.....  ++   .-++..|.. --.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~--p~---~~dg~~l~~~~~~  173 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET--PL---VNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE--ES---SCSSSSTTCGGGE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc--cc---CCCCccccccccc
Confidence            48888888877765   5888888866421  11233555555 2 33  4444432100  00   000111111 123


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCcEEEEE--cCCEEEEEeCCC------------------------------------
Q 016134          254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLC--WDQFLLSCSLDH------------------------------------  295 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg------------------------------------  295 (394)
                      ++.+.+.|.++.+.+.++.--. ...-+++  .++++++.+.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4567778888777776665211 2222333  366666666442                                    


Q ss_pred             --cEEEEEeCC--Cce-eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc------------eeEEE
Q 016134          296 --TIKVWFATG--RGN-LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM------------ERGRI  358 (394)
Q Consensus       296 --~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~------------~~~~~  358 (394)
                        .|.+.|.++  ++. +..+.....++.     +.++|||+++++++..+.+|.++|+.+.+            ....+
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhG-----v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v  327 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIANNPHG-----CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  327 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEESSCCC-----EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred             ECcEEEEeCcccCCceeEEEEecCCCceE-----EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc
Confidence              466777765  333 333333333222     23599999888888889999999999653            33444


Q ss_pred             ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          359 FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       359 ~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ........++|+|+| .+++.-.|++|.+|++..
T Consensus       328 ~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          328 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            446679999999999 666777899999999865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.96  E-value=0.00065  Score=59.93  Aligned_cols=147  Identities=10%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             CEEEEEecCC-eEEEEeCCC--eEEEEeCCCCceeEEEcCCCCCc-EEEEEcCCEEEEEe-CCCcEEEEEeCCCceeeEe
Q 016134          237 PVTCLAVGRS-RLCSGSMDN--TIRVWELDTLEPVMTLNDHTDAP-MSLLCWDQFLLSCS-LDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       237 ~V~~l~~~~~-~l~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~l~s~s-~Dg~i~vwd~~~~~~~~~~  311 (394)
                      ....|.|+++ ++.+.+.+|  .|+++|+++++.+.++....... ..+.+.++.|.... .++.+.+||..+.+.+.++
T Consensus        44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            3467777744 455666665  99999999999998886543322 44677766655554 5889999999998888877


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC------CcEEEEEECCCC-EEEEEeCCCeE
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK------HEVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------~~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                      .....   ...+    .++++.++++ ..++.|.++|..+++.+..+.-.      ..++.+.|. +| +++..-.+..|
T Consensus       124 ~~~~e---G~gl----t~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          124 NYDGE---GWGL----THNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             ECSSC---CCCE----EECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             ECCCC---ceEE----ecCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence            65332   1223    2456645554 44788999999999888887651      235667876 67 44444467788


Q ss_pred             EEEeCCCC
Q 016134          385 GVWKLLAK  392 (394)
Q Consensus       385 ~vWd~~~~  392 (394)
                      .+.|..+.
T Consensus       195 ~vIDp~tG  202 (262)
T 3nol_A          195 VRIDPETG  202 (262)
T ss_dssp             EEECTTTC
T ss_pred             EEEECCCC
Confidence            88887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.96  E-value=0.0014  Score=67.45  Aligned_cols=196  Identities=9%  Similarity=0.024  Sum_probs=103.8

Q ss_pred             ceeeecccc-ccccccCCCee-cCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----e-
Q 016134          128 TSKKTTLKN-VCCHWLLGNCV-RGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----A-  198 (394)
Q Consensus       128 ~v~~~~~~~-~~~~~~~~~~~-~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----v-  198 (394)
                      .+.... ++ |++.++|-... +|+....|+++|+.++ ..+...+.   .....++|+||++.|+-...|..     | 
T Consensus       175 ~~~~~~-~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVK-PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEE-ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeE-ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            566666 99 99999875544 3445557999999876 42111121   12356899999988887776532     3 


Q ss_pred             -eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEe---CCCeEEEEeCCCCc-ee--E
Q 016134          199 -WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGS---MDNTIRVWELDTLE-PV--M  269 (394)
Q Consensus       199 -Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs---~Dg~V~iwd~~~~~-~~--~  269 (394)
                       +++.+++..                +.++...  ........+.|+  +++|+..+   ....|.++|+.+++ ..  .
T Consensus       251 ~~~lgt~~~~----------------~~lv~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          251 RHVMGKLQSE----------------DVCLYEE--HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEETTSCGGG----------------CEEEEEC--CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEECCCCchh----------------cEEEEec--CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence             444443210                0000000  111223445555  44544433   23468888988752 22  3


Q ss_pred             EE-cCCCCCcEEEEEc-CCEEEEEe-CC--C--cEEEEEeCCCceeeE-eecccCCcceEEEEeeECCCCCcEEEEEeCC
Q 016134          270 TL-NDHTDAPMSLLCW-DQFLLSCS-LD--H--TIKVWFATGRGNLEA-AYTHKEDNGVLALGGLNDPDGKPVLICACND  341 (394)
Q Consensus       270 ~~-~~h~~~v~~l~~~-~~~l~s~s-~D--g--~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d  341 (394)
                      .+ ........++.|. ++.|+..+ .+  +  .|..+|+.+...... +..+........+    ++.+..++++...+
T Consensus       313 ~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~----~~~~~~lv~~~~~~  388 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI----AVRSNYLVVAGRRA  388 (751)
T ss_dssp             ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE----EECSSEEEEEEEET
T ss_pred             EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE----EEECCEEEEEEEeC
Confidence            33 3345566777754 66555444 33  2  566666654222222 3333322222222    23345477788888


Q ss_pred             CeEE--EEEC
Q 016134          342 NTVH--LYEL  349 (394)
Q Consensus       342 g~I~--iwd~  349 (394)
                      +..+  ++++
T Consensus       389 g~~~l~~~dl  398 (751)
T 2xe4_A          389 GLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            8654  5564

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.90  E-value=0.0013  Score=66.70  Aligned_cols=152  Identities=12%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             EEec--CCeEEEEeCCC-------------------eEEEEeCCCCceeEEEcC--CC-------CCcE--EEEEcCC--
Q 016134          241 LAVG--RSRLCSGSMDN-------------------TIRVWELDTLEPVMTLND--HT-------DAPM--SLLCWDQ--  286 (394)
Q Consensus       241 l~~~--~~~l~sgs~Dg-------------------~V~iwd~~~~~~~~~~~~--h~-------~~v~--~l~~~~~--  286 (394)
                      ++++  .++++.++.++                   .|..+|.++++.+..++.  |.       .++.  .+.+.++  
T Consensus       235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~  314 (668)
T 1kv9_A          235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR  314 (668)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence            3443  46677776665                   499999999999877764  22       2222  2333454  


Q ss_pred             -EEEEEeCCCcEEEEEeCCCceeeEeecccCC---------------------c-ceEEE----------EeeECCCCCc
Q 016134          287 -FLLSCSLDHTIKVWFATGRGNLEAAYTHKED---------------------N-GVLAL----------GGLNDPDGKP  333 (394)
Q Consensus       287 -~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~---------------------~-~~~~~----------~~~~s~~g~~  333 (394)
                       .++.++.+|.+.++|..+++.+.........                     . ....+          ..+++|+.. 
T Consensus       315 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-  393 (668)
T 1kv9_A          315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-  393 (668)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-
T ss_pred             EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-
Confidence             6888999999999999998876433221100                     0 00000          023466655 


Q ss_pred             EEEEE------------------------------------eCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEE
Q 016134          334 VLICA------------------------------------CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       334 ~l~sg------------------------------------s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~  376 (394)
                      ++...                                    ..++.|..||+.+++.+-++.....+....+...+ +++
T Consensus       394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf  473 (668)
T 1kv9_A          394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF  473 (668)
T ss_dssp             EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred             EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE
Confidence            33221                                    13488999999999988777664444333333344 888


Q ss_pred             EEeCCCeEEEEeCCCCC
Q 016134          377 TGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       377 tgs~Dg~I~vWd~~~~~  393 (394)
                      .++.|+.|++||..+.+
T Consensus       474 ~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          474 QGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EECTTSEEEEEETTTCC
T ss_pred             EECCcccchhhhhhcCh
Confidence            99999999999987653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.89  E-value=0.0029  Score=55.20  Aligned_cols=149  Identities=13%  Similarity=0.037  Sum_probs=101.8

Q ss_pred             CCCEEEEEecCCeE-EEEeCC--CeEEEEeCCCCceeEEEcCCCCCc-EEEEEcCCEEEE-EeCCCcEEEEEeCCCceee
Q 016134          235 TRPVTCLAVGRSRL-CSGSMD--NTIRVWELDTLEPVMTLNDHTDAP-MSLLCWDQFLLS-CSLDHTIKVWFATGRGNLE  309 (394)
Q Consensus       235 ~~~V~~l~~~~~~l-~sgs~D--g~V~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~l~s-~s~Dg~i~vwd~~~~~~~~  309 (394)
                      ......|.|+++.| .+.+.+  ..|+++|+++++.+.++....... ..+...++.|.. .-.++.+.+||..+.+.+.
T Consensus        20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            34567888886654 444554  499999999999998886443322 456666655544 4468999999999988888


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC------CcEEEEEECCCC-EEEEEeCCC
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK------HEVRVIEIGPDK-LFFTGDGAG  382 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------~~v~~l~~sp~~-~l~tgs~Dg  382 (394)
                      ++.....   ...+    .++++.++++ ..++.|.++|..+.+.+..+.-.      ..++.+.+. +| .++..-.+.
T Consensus       100 ti~~~~~---Gwgl----t~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X          100 RFRYPGE---GWAL----TSDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             EEECSSC---CCEE----EECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred             EEeCCCC---ceEE----eeCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence            7765432   2333    2356645555 45889999999999888877652      346777776 56 444444677


Q ss_pred             eEEEEeCCCC
Q 016134          383 MLGVWKLLAK  392 (394)
Q Consensus       383 ~I~vWd~~~~  392 (394)
                      .|.+.|..+.
T Consensus       171 ~I~vIDp~tG  180 (243)
T 3mbr_X          171 RIARIDPASG  180 (243)
T ss_dssp             EEEEECTTTC
T ss_pred             eEEEEECCCC
Confidence            8888887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.86  E-value=0.013  Score=51.75  Aligned_cols=191  Identities=14%  Similarity=0.048  Sum_probs=108.4

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAG  229 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~  229 (394)
                      +.|.+++.... .....+.........|++++++..|+.+.. .+.|  ++++......+..                  
T Consensus        58 ~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------------------  118 (267)
T 1npe_A           58 PSIGRASLHGG-EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD------------------  118 (267)
T ss_dssp             TEEEEEESSSC-CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------
T ss_pred             CEEEEEecCCC-CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE------------------
Confidence            48889998655 222333333357889999997766665554 3443  4444322111100                  


Q ss_pred             ecCCCCCCEEEEEec--CCeEEEEeC---CCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc--CCEEEEE-eCCCcEEEE
Q 016134          230 AQDGHTRPVTCLAVG--RSRLCSGSM---DNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW--DQFLLSC-SLDHTIKVW  300 (394)
Q Consensus       230 ~~~~h~~~V~~l~~~--~~~l~sgs~---Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~-s~Dg~i~vw  300 (394)
                         ........++++  +..|+.+..   .+.|..+++.. +....+ .........++++  +..|+.+ ...+.|.++
T Consensus       119 ---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          119 ---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             ---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence               011234566665  344444443   36788888764 323333 2233456788887  4555444 456789999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCC--cEEEEEECCCC
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKH--EVRVIEIGPDK  373 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~v~~l~~sp~~  373 (394)
                      |+...........   ......++  .  ++..++++....+.|.++|..+++.+..+....  ....+++.|++
T Consensus       195 ~~~g~~~~~~~~~---~~~P~gi~--~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          195 NPAQPGRRKVLEG---LQYPFAVT--S--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ETTEEEEEEEEEC---CCSEEEEE--E--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             ecCCCceEEEecC---CCCceEEE--E--eCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            9864332222211   11222332  2  334366666677899999999998888876532  46778888775

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.83  E-value=0.0027  Score=62.48  Aligned_cols=232  Identities=14%  Similarity=0.054  Sum_probs=139.1

Q ss_pred             cccccccCCCeecCCCCCeEEEEEcCCCceEEEEecc-cCCCeEEEEe-c-CCCCEEEEEeC-------CCc--------
Q 016134          136 NVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEG-HEKAVSGIAL-P-LRSDKLFSGSR-------DGT--------  197 (394)
Q Consensus       136 ~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~-h~~~V~~l~~-s-~~~~~l~sgs~-------Dg~--------  197 (394)
                      .+++.|+......   +..|.+-|+.+. +....+.- ....+..+++ . |++++++.++.       ||.        
T Consensus        98 ~~DG~~lfVnd~~---~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           98 KYDGRFLFMNDKA---NTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEEEETT---TTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CcCCCEEEEEcCC---CCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            3477777653332   337889999876 65664432 2346889998 5 99999999863       222        


Q ss_pred             -----eeecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecCCCC------------CCEEEEEe--------cCCeEEE
Q 016134          198 -----AWNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQDGHT------------RPVTCLAV--------GRSRLCS  250 (394)
Q Consensus       198 -----vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~~h~------------~~V~~l~~--------~~~~l~s  250 (394)
                           +.|.++.+........+.-..++++++  .+++.+.+...            ..|.-+.+        .+++...
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence                 577777766522111113345667776  77777765322            12222222        1444433


Q ss_pred             EeCCCeEEEEeCCC--Cce-eEEEcCCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCCcee---------eEeeccc
Q 016134          251 GSMDNTIRVWELDT--LEP-VMTLNDHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGRGNL---------EAAYTHK  315 (394)
Q Consensus       251 gs~Dg~V~iwd~~~--~~~-~~~~~~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~~~~---------~~~~~~~  315 (394)
                          +.|.|.|.++  ++. +..+.. .....++.++  |+++++++ .+.+|.++|+.+.+..         .......
T Consensus       254 ----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          254 ----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             ----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             ----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence                5599999998  555 555543 2345667777  77666655 5889999999854210         0011111


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC----------CceeEEEecCCcEE------EEEECCCC-EEEEE
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS----------FMERGRIFSKHEVR------VIEIGPDK-LFFTG  378 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~~~~v~------~l~~sp~~-~l~tg  378 (394)
                        ...-.+...|+++| ...++.-.|++|.+||+.+          .+.+..+.-...+-      .+.++||| +|++.
T Consensus       329 --vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          329 --LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             --CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             --CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence              22223344589999 5888899999999999987          44555554433321      22457899 66665


Q ss_pred             e
Q 016134          379 D  379 (394)
Q Consensus       379 s  379 (394)
                      .
T Consensus       406 N  406 (595)
T 1fwx_A          406 S  406 (595)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.83  E-value=0.0063  Score=60.75  Aligned_cols=80  Identities=9%  Similarity=-0.105  Sum_probs=49.8

Q ss_pred             CCCcEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcE--EEEEE
Q 016134          293 LDHTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEV--RVIEI  369 (394)
Q Consensus       293 ~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v--~~l~~  369 (394)
                      .++.|..||+.+++.+-........ ...+.      ..+. +++.++.|+.|+.||.++++++-++.....+  .-+.+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~------tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y  523 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMA------TAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTY  523 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEE------ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcceE------ecCC-EEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEE
Confidence            3478999999888766554322111 11122      1344 6777999999999999999999887653221  12344


Q ss_pred             CCCC--EEEEEe
Q 016134          370 GPDK--LFFTGD  379 (394)
Q Consensus       370 sp~~--~l~tgs  379 (394)
                      ..+|  ++++.+
T Consensus       524 ~~~G~qyv~~~~  535 (599)
T 1w6s_A          524 THKGTQYVAIYY  535 (599)
T ss_dssp             EETTEEEEEEEE
T ss_pred             EeCCEEEEEEEc
Confidence            4577  555543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.78  E-value=0.0094  Score=59.36  Aligned_cols=80  Identities=15%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             CCcEEEEEeCCCceeeEeecccCCc-ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE--EEEC
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDN-GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIG  370 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~s  370 (394)
                      ++.|..||+.+++.+-......... ..+..      .+. +++.++.|+.|+.||.++++++-++.....+.+  +.+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~  537 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------AGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEE------TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEe------CCC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEE
Confidence            5789999999887765544322111 12221      344 677799999999999999999988877444332  5555


Q ss_pred             CCC--EEEEEeC
Q 016134          371 PDK--LFFTGDG  380 (394)
Q Consensus       371 p~~--~l~tgs~  380 (394)
                      .+|  ++++.+.
T Consensus       538 ~~G~qYv~~~~G  549 (582)
T 1flg_A          538 QDGEQYLGVTVG  549 (582)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEcc
Confidence            677  5554433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=0.038  Score=56.89  Aligned_cols=211  Identities=11%  Similarity=0.036  Sum_probs=128.8

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEec----------CCCCcEEEEEEcCC-EEEEEecC---------
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLD----------GPVGEVYSMVVANE-MLFAGAQD---------  232 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~----------~~~~~v~~l~~~~~-~l~~~~~~---------  232 (394)
                      ...|.+|...+++.+-+..-..|. .++..+.......          .....|.++...++ .+.+|+.+         
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG  391 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence            467999999988875543334554 4666655433221          12356888887765 56666532         


Q ss_pred             ------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEc---CCCCCcEEEEEc-CCEEEEEeCCC
Q 016134          233 ------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLN---DHTDAPMSLLCW-DQFLLSCSLDH  295 (394)
Q Consensus       233 ------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~-~~~l~s~s~Dg  295 (394)
                                  .....|.++..+ ...|..|+.++-|..+|.++++.. .+.   .....|.++... ...|..+.. +
T Consensus       392 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~-~  469 (781)
T 3v9f_A          392 KRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTH-A  469 (781)
T ss_dssp             EEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEET-T
T ss_pred             CCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEEC-C
Confidence                        123568888876 566777888778999998776543 332   134678888877 556777776 5


Q ss_pred             cEEEEEeCCCceeeEeecccC---CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-----CCcEEEE
Q 016134          296 TIKVWFATGRGNLEAAYTHKE---DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-----KHEVRVI  367 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~~~v~~l  367 (394)
                      -|.++|..+.+..........   ...+.+  +..+++|. +.+ |+.++-|..||..+.+. ..+..     ...|.++
T Consensus       470 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~--i~~d~~g~-lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          470 GVFVIDLASKKVIHHYDTSNSQLLENFVRS--IAQDSEGR-FWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQI  544 (781)
T ss_dssp             EEEEEESSSSSCCEEECTTTSSCSCSCEEE--EEECTTCC-EEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEE
T ss_pred             ceEEEeCCCCeEEecccCcccccccceeEE--EEEcCCCC-EEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEE
Confidence            688899876543322211100   122333  33577887 444 55544577888876543 33322     3468999


Q ss_pred             EECCCCEEEEEeCCCeEEEEeCCC
Q 016134          368 EIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       368 ~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      ...++|.|..++.+|.|..||..+
T Consensus       545 ~~d~~g~lWi~T~~Glv~~~d~~~  568 (781)
T 3v9f_A          545 YRSSKGQMWLATGEGLVCFPSARN  568 (781)
T ss_dssp             EECTTSCEEEEETTEEEEESCTTT
T ss_pred             EECCCCCEEEEECCCceEEECCCC
Confidence            999998666666666547777554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.77  E-value=0.0039  Score=61.97  Aligned_cols=81  Identities=11%  Similarity=-0.086  Sum_probs=50.3

Q ss_pred             CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEE--EEEECC
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVR--VIEIGP  371 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~--~l~~sp  371 (394)
                      ++.|..||+.+++.+-.......... ..+    ...+. +++.++.|+.|+.+|.++++++.++.....+.  -+.+..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~-~~~----~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~  516 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWG-GTL----YTKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCS-BCE----EETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccc-eeE----EECCC-EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE
Confidence            57899999988877655543221111 111    11344 56668999999999999999998887643321  233446


Q ss_pred             CC--EEEEEeC
Q 016134          372 DK--LFFTGDG  380 (394)
Q Consensus       372 ~~--~l~tgs~  380 (394)
                      ++  ++++.+.
T Consensus       517 ~G~~yv~~~~G  527 (571)
T 2ad6_A          517 KGKQYIGSMYG  527 (571)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEECC
Confidence            77  4444433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.71  E-value=0.0054  Score=60.98  Aligned_cols=138  Identities=12%  Similarity=0.033  Sum_probs=86.2

Q ss_pred             CeEEEEeCCCCceeEEEcC--CC--------CCcE-EEEEcC---CEEEEEeCCCcEEEEEeCCCceeeEeecccCCc--
Q 016134          255 NTIRVWELDTLEPVMTLND--HT--------DAPM-SLLCWD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDN--  318 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~--h~--------~~v~-~l~~~~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~--  318 (394)
                      +.|..+|.++++.+-.++.  |.        .++. .....+   ..++.++.+|.+.++|..+++.+..........  
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            3699999999998877753  21        1221 111234   357778889999999999888765543221000  


Q ss_pred             --------c--------------eEEE-----------EeeECCCCCcEEEEEe--------------------------
Q 016134          319 --------G--------------VLAL-----------GGLNDPDGKPVLICAC--------------------------  339 (394)
Q Consensus       319 --------~--------------~~~~-----------~~~~s~~g~~~l~sgs--------------------------  339 (394)
                              .              ....           ..+++|+.. +|....                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccce
Confidence                    0              0000           123567666 444332                          


Q ss_pred             -----------CCCeEEEEECCCCceeEEEecCCcEEEEEEC-CCCEEEEEeCCCeEEEEeCCCCC
Q 016134          340 -----------NDNTVHLYELPSFMERGRIFSKHEVRVIEIG-PDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       340 -----------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~s-p~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                                 .++.|..||+.+++.+-++.....+....+. .+++++.++.|+.|+.||..+..
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence                       3578999999999888777654443332222 24578889999999999987653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.025  Score=58.31  Aligned_cols=230  Identities=13%  Similarity=0.080  Sum_probs=133.4

Q ss_pred             EEEEEcCCCceEEEEec-------ccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEec---------------C
Q 016134          155 LHSWFCGEGLTMLAKLE-------GHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLD---------------G  211 (394)
Q Consensus       155 i~iWd~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~---------------~  211 (394)
                      |.+||..++ +......       -....|.+|...+++.+.+....+|. ++|..+.......               -
T Consensus       232 l~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l  310 (781)
T 3v9f_A          232 LALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL  310 (781)
T ss_dssp             EEEEETTTT-EEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSB
T ss_pred             HheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence            777887654 2221111       12467999999888765554433665 5777665533211               1


Q ss_pred             CCCcEEEEEEcCC-EEEEEecC----------------C-----------CCCCEEEEEec-CCeEEEEeCCCeEEEEeC
Q 016134          212 PVGEVYSMVVANE-MLFAGAQD----------------G-----------HTRPVTCLAVG-RSRLCSGSMDNTIRVWEL  262 (394)
Q Consensus       212 ~~~~v~~l~~~~~-~l~~~~~~----------------~-----------h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~  262 (394)
                      ....|.++....+ .+.+|+.+                .           ....|.++..+ ...|..|+.++-|.+||.
T Consensus       311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~  390 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN  390 (781)
T ss_dssp             SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred             CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence            2356788877665 55566532                0           12458888877 467888887777999998


Q ss_pred             CCCceeEEE---cCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecc-cCCcceEEEEeeECCCCCcEEEE
Q 016134          263 DTLEPVMTL---NDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTH-KEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       263 ~~~~~~~~~---~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                      .+++.....   ......|.++... ...|..+..++-|..+|..+++.. .+... .....+.++  ..++++. +.+ 
T Consensus       391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i--~~d~~g~-lwi-  465 (781)
T 3v9f_A          391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVF--YEDKNKK-IWI-  465 (781)
T ss_dssp             TEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEE--EECTTSE-EEE-
T ss_pred             CCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEE--EECCCCC-EEE-
Confidence            754322111   1234568888877 556667777777888987655332 22111 111233333  3466776 433 


Q ss_pred             EeCCCeEEEEECCCCceeEEEec------CCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          338 ACNDNTVHLYELPSFMERGRIFS------KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       338 gs~dg~I~iwd~~~~~~~~~~~~------~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      |+. +-|.+||..+++.......      ...|.++...+++.|..|+.++-|..|+..+
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~  524 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM  524 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence            555 5689999887654332221      2469999999988666676644466676543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.67  E-value=0.018  Score=57.40  Aligned_cols=138  Identities=14%  Similarity=-0.001  Sum_probs=83.7

Q ss_pred             CeEEEEeCCCCceeEEEcCCCC---------CcEEEEE---cC---CEEEEEeCCCcEEEEEeCCCceeeEeecccC---
Q 016134          255 NTIRVWELDTLEPVMTLNDHTD---------APMSLLC---WD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKE---  316 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~---------~v~~l~~---~~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~---  316 (394)
                      ..|..+|.++++.+-.++....         ...-+..   .+   ..++.++.+|.+.++|.++++.+-.......   
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            3899999999998877754211         1122222   25   4677788999999999999887655432110   


Q ss_pred             ------Ccce---------------EE-----------EEeeECCCCCcEEEEE--------------------------
Q 016134          317 ------DNGV---------------LA-----------LGGLNDPDGKPVLICA--------------------------  338 (394)
Q Consensus       317 ------~~~~---------------~~-----------~~~~~s~~g~~~l~sg--------------------------  338 (394)
                            ....               ..           -..+++|+.. ++.+.                          
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEeccccceeeecccccccCCcceecccc
Confidence                  0000               00           0112345444 22221                          


Q ss_pred             -------e------CCCeEEEEECCCCceeEEEecCCcEEEE-EECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          339 -------C------NDNTVHLYELPSFMERGRIFSKHEVRVI-EIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       339 -------s------~dg~I~iwd~~~~~~~~~~~~~~~v~~l-~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                             +      .++.|.-||+.+++.+-+.....++..- .....++++.++.|+.|+.||..+..
T Consensus       437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence                   1      3578999999999887777543332211 11234488889999999999988753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.57  E-value=0.0078  Score=60.84  Aligned_cols=215  Identities=13%  Similarity=0.113  Sum_probs=113.6

Q ss_pred             eEEEEEcCCCc-eEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          154 FLHSWFCGEGL-TMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       154 ~i~iWd~~~~~-~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      .+.+||..++. ..+..+. .+.....++++..++++++.|+.+..   +||..+++...+....               
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~---------------  284 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---------------  284 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---------------
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC---------------
Confidence            68889987652 3333332 23334445778889999999996653   6887776654432111               


Q ss_pred             EecCCCCCCEEEEEe-cCCeEEEEe-CC-----CeEEEEeCCCCceeEEEcC------CCCCcEEEE-EcCCEEEEEeCC
Q 016134          229 GAQDGHTRPVTCLAV-GRSRLCSGS-MD-----NTIRVWELDTLEPVMTLND------HTDAPMSLL-CWDQFLLSCSLD  294 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~-~~~~l~sgs-~D-----g~V~iwd~~~~~~~~~~~~------h~~~v~~l~-~~~~~l~s~s~D  294 (394)
                          .....-.++.+ ++.+++.|+ .+     ..+.+||..+.+-.. +..      ....-.++. ..+..++.++.+
T Consensus       285 ----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~  359 (656)
T 1k3i_A          285 ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKK  359 (656)
T ss_dssp             ----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred             ----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceeecCCceEEEECCC
Confidence                01111223344 467777777 34     579999998765322 210      000000000 113333444333


Q ss_pred             ---------CcEEEEEeCCCceeeEeecccC-------CcceEEEEeeEC-CCCCcEEEEEeCCC-----------eEEE
Q 016134          295 ---------HTIKVWFATGRGNLEAAYTHKE-------DNGVLALGGLND-PDGKPVLICACNDN-----------TVHL  346 (394)
Q Consensus       295 ---------g~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~s-~~g~~~l~sgs~dg-----------~I~i  346 (394)
                               ..+..||..+............       .....  .+.+. .+++ +++.|+.++           .|.+
T Consensus       360 g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~--av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~  436 (656)
T 1k3i_A          360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN--AVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITL  436 (656)
T ss_dssp             GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE--EEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEEC
T ss_pred             CcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc--eEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEc
Confidence                     4577888876654332222111       01111  11222 3555 888887543           6888


Q ss_pred             EECCCCceeEEE----ecCCcEEEEEECCCC-EEEEEeCC-----------CeEEEEeCCC
Q 016134          347 YELPSFMERGRI----FSKHEVRVIEIGPDK-LFFTGDGA-----------GMLGVWKLLA  391 (394)
Q Consensus       347 wd~~~~~~~~~~----~~~~~v~~l~~sp~~-~l~tgs~D-----------g~I~vWd~~~  391 (394)
                      ||..+..-....    .....-.++...|++ +++.|+.+           ..+.+||..+
T Consensus       437 yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          437 GEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             CSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence            888776543322    112222345667788 77777754           4688998754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.54  E-value=0.0036  Score=63.31  Aligned_cols=215  Identities=10%  Similarity=-0.022  Sum_probs=103.6

Q ss_pred             eEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEe-CCCc-------eeecCCCcEEEecCCC-CcEEEEEEcC
Q 016134          154 FLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGT-------AWNIESSAEFSLDGPV-GEVYSMVVAN  223 (394)
Q Consensus       154 ~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~-------vWd~~~~~~~~~~~~~-~~v~~l~~~~  223 (394)
                      .+++||..+.. ..+..+... ..-.++++.+++++++.|+ .++.       +||..+++...+.... .+...    .
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~----~  340 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT----A  340 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC----C
T ss_pred             ceEEecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc----c
Confidence            79999987652 222222211 1223455667899999998 4432       6888877654432110 00000    0


Q ss_pred             CEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCC---------CCcEEEEEc---CCEEEEE
Q 016134          224 EMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHT---------DAPMSLLCW---DQFLLSC  291 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~---------~~v~~l~~~---~~~l~s~  291 (394)
                      ...   ..-.+...+..+......+........+..||..+.+-......+.         ..-.++.+.   +++++.|
T Consensus       341 ~~~---~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G  417 (656)
T 1k3i_A          341 DKQ---GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG  417 (656)
T ss_dssp             CTT---GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred             ccc---ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence            000   0000111111111111111122234568899998766443332221         123445432   6677777


Q ss_pred             eCCC-----------cEEEEEeCCCceeeEe--ecccCCcceEEEEeeECCCCCcEEEEEeCC-----------CeEEEE
Q 016134          292 SLDH-----------TIKVWFATGRGNLEAA--YTHKEDNGVLALGGLNDPDGKPVLICACND-----------NTVHLY  347 (394)
Q Consensus       292 s~Dg-----------~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----------g~I~iw  347 (394)
                      +.+.           .|.+||..+..-....  ..........+   +..|+++ +++.|+.+           ..+.+|
T Consensus       418 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~---~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          418 GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS---VVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             CBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE---EECTTSC-EEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             CCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCe---EECCCCC-EEEECCcccCcCcCCCCcccceEEE
Confidence            6432           5777877654433222  11111111111   2367888 88888754           568999


Q ss_pred             ECCCCceeEE--Eec-CCcEEEEEECCCC-EEEEEeC
Q 016134          348 ELPSFMERGR--IFS-KHEVRVIEIGPDK-LFFTGDG  380 (394)
Q Consensus       348 d~~~~~~~~~--~~~-~~~v~~l~~sp~~-~l~tgs~  380 (394)
                      |..+.+-...  +.. .....+..+.|++ +++.|+.
T Consensus       494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            9877543211  111 1223345567888 7777774

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.51  E-value=0.049  Score=49.06  Aligned_cols=215  Identities=12%  Similarity=0.001  Sum_probs=113.7

Q ss_pred             eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CC-ce--eecCCCc
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DG-TA--WNIESSA  205 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg-~v--Wd~~~~~  205 (394)
                      ..++ +.+.+....+...    .+.|..||.......  .+. -...+..|++.++++++++... ++ .|  +|..+++
T Consensus        35 egia-~~~~g~lyv~d~~----~~~I~~~d~~g~~~~--~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           35 ENLA-SAPDGTIFVTNHE----VGEIVSITPDGNQQI--HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             EEEE-ECTTSCEEEEETT----TTEEEEECTTCCEEE--EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             ceEE-ECCCCCEEEEeCC----CCeEEEECCCCceEE--EEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            3444 5555554333222    347888887664322  222 2356899999999996665543 23 24  4555555


Q ss_pred             EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE-ecCCeE-EEEeCCCeEEEEeCCCCce-eEEEc---------C
Q 016134          206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA-VGRSRL-CSGSMDNTIRVWELDTLEP-VMTLN---------D  273 (394)
Q Consensus       206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~-~~~~~l-~sgs~Dg~V~iwd~~~~~~-~~~~~---------~  273 (394)
                      ...+...                    ........++ +.+..+ ++-..++.|.++|..+++. +....         .
T Consensus       107 ~~~~~~~--------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A          107 VETLLTL--------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEEEEC--------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEEEEeC--------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            4322110                    0011122222 334443 4434578888899875431 21111         1


Q ss_pred             CCCCcEEEEEcCCEEEE-EeCCCcEEEEEeCC-Cce--eeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          274 HTDAPMSLLCWDQFLLS-CSLDHTIKVWFATG-RGN--LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       274 h~~~v~~l~~~~~~l~s-~s~Dg~i~vwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      .......+...++.|+. -...+.|..+|+.. ++.  ...+... .....++    ++++|. ++++....+.|.++|.
T Consensus       167 ~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~----vd~dG~-l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          167 VFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFA----FDVEGN-LYGATHIYNSVVRIAP  240 (306)
T ss_dssp             CSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEE----EBTTCC-EEEECBTTCCEEEECT
T ss_pred             CCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeE----ECCCCC-EEEEeCCCCeEEEECC
Confidence            11234556555665544 44578999999864 221  1111111 1122233    488997 7777667789999997


Q ss_pred             CCCceeEE--Eec-CCcEEEEEEC---CCC-EEEEEe
Q 016134          350 PSFMERGR--IFS-KHEVRVIEIG---PDK-LFFTGD  379 (394)
Q Consensus       350 ~~~~~~~~--~~~-~~~v~~l~~s---p~~-~l~tgs  379 (394)
                      . ++....  +.. ....++++|.   |++ .|+..+
T Consensus       241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             C-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            5 544222  222 2568999998   786 444433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.50  E-value=0.054  Score=49.08  Aligned_cols=129  Identities=16%  Similarity=0.119  Sum_probs=73.8

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEE-eCCCcEEEEEeCCCc--eeeEeecccCCcceEEEEeeECC
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSC-SLDHTIKVWFATGRG--NLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      +.|..||..+++...... .......++++  ++.|+.+ ...+.|.+|++....  ....+.....   ..  .++.++
T Consensus       165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g---P~--gi~~d~  238 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN---PG--NIKRNA  238 (322)
T ss_dssp             EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---EE--EEEECT
T ss_pred             ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---CC--CeEECC
Confidence            667778876665432222 12334567777  5655555 556899999987421  1122221111   22  234588


Q ss_pred             CCCcEEEEEeC----------CCeEEEEECCCCceeEEEecC-----CcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          330 DGKPVLICACN----------DNTVHLYELPSFMERGRIFSK-----HEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       330 ~g~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~-----~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      +|. +.++...          .+.|..+|.. ++.+..+...     ..++.+++. ++ ++++....+.|..+++..+
T Consensus       239 ~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          239 DGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred             CCC-EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence            998 5555433          4678888864 6666555442     246677663 56 5556667889999998754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.39  E-value=0.012  Score=53.48  Aligned_cols=151  Identities=10%  Similarity=-0.015  Sum_probs=91.2

Q ss_pred             EEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC--------------------CCCCcEEEEEc--CCEEEEEeC
Q 016134          238 VTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND--------------------HTDAPMSLLCW--DQFLLSCSL  293 (394)
Q Consensus       238 V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~--------------------h~~~v~~l~~~--~~~l~s~s~  293 (394)
                      ..+++++  +++++++..++.|..||..+++.. .+..                    ....+..+++.  +..|+.+..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            3455675  456888888999999998765432 2221                    01246788887  456777766


Q ss_pred             CCcEEEEEeCCCceeeEeecccCC-cceEEEEeeECC-CCCcEEEEEeC-----------------CCeEEEEECCCCce
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDP-DGKPVLICACN-----------------DNTVHLYELPSFME  354 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~-~g~~~l~sgs~-----------------dg~I~iwd~~~~~~  354 (394)
                      .+.|..+|...+. +..+...... .......+..++ +|. +.++-..                 ++.|..||..+++.
T Consensus       100 ~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A          100 YYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            6668888865432 2222211110 001111234588 887 6665432                 36788899877654


Q ss_pred             eEEEecCCcEEEEEECCCC-EEEEE-eCCCeEEEEeCCC
Q 016134          355 RGRIFSKHEVRVIEIGPDK-LFFTG-DGAGMLGVWKLLA  391 (394)
Q Consensus       355 ~~~~~~~~~v~~l~~sp~~-~l~tg-s~Dg~I~vWd~~~  391 (394)
                      ............|+++|++ .|+.+ ...+.|.+|++..
T Consensus       178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            3333223456789999998 45444 5678999998864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.38  E-value=0.023  Score=58.35  Aligned_cols=239  Identities=10%  Similarity=-0.029  Sum_probs=120.9

Q ss_pred             Cccc-ccccccccc-----cCCCCCcccccccCCC-CCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec
Q 016134           76 PSYN-RLKNNLWVS-----SGSEDRIPHVRNRENP-GYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        76 ~~~~-~~~~~~~~~-----s~s~d~~~~~w~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      .+|+ +  ++.+|+     +|+...+++++|++++ ......          .    ......+. |+|++..++-...+
T Consensus       179 ~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------~----~~~~~~~~-WspDg~~l~y~~~d  241 (751)
T 2xe4_A          179 VKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------V----SGTNGEIV-WGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------E----EEECSCCE-ECSSTTEEEEEEEC
T ss_pred             eEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------c----cCceeeEE-EecCCCEEEEEEEC
Confidence            4556 5  777777     3444457999999988 521100          0    11223455 89988777655544


Q ss_pred             CC-CCCeEEEEEcCCCc-eEEEEec-ccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCC--cE--EEecCCCCcE
Q 016134          149 GD-ECRFLHSWFCGEGL-TMLAKLE-GHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESS--AE--FSLDGPVGEV  216 (394)
Q Consensus       149 g~-~~~~i~iWd~~~~~-~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~--~~--~~~~~~~~~v  216 (394)
                      .. ....|.++++.++. +....+. .+......+.|+||+++|+..+.++.     ++|+.++  +.  ..+..     
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-----  316 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-----  316 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-----
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-----
Confidence            32 12368888887653 1122322 23345678899999999887664433     4566554  12  21111     


Q ss_pred             EEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEe-CC----CeEEEEeCCCCceeEE-EcCCCC--CcEEEEEcCC-
Q 016134          217 YSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGS-MD----NTIRVWELDTLEPVMT-LNDHTD--APMSLLCWDQ-  286 (394)
Q Consensus       217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs-~D----g~V~iwd~~~~~~~~~-~~~h~~--~v~~l~~~~~-  286 (394)
                                      .......++.|+ ++.|+..+ .+    ..|.++|+.+...... +..+..  .+..+.+.++ 
T Consensus       317 ----------------~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~  380 (751)
T 2xe4_A          317 ----------------REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNY  380 (751)
T ss_dssp             ----------------CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSE
T ss_pred             ----------------CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCE
Confidence                            122334445533 45444333 32    3677777764222222 222333  3455666654 


Q ss_pred             EEEEEeCCCcEE--EEEe-------CCCceeeEeecccCCcceEEEEeeE--CCCCCcEEEEEeCC---CeEEEEECCCC
Q 016134          287 FLLSCSLDHTIK--VWFA-------TGRGNLEAAYTHKEDNGVLALGGLN--DPDGKPVLICACND---NTVHLYELPSF  352 (394)
Q Consensus       287 ~l~s~s~Dg~i~--vwd~-------~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~~l~sgs~d---g~I~iwd~~~~  352 (394)
                      ++++...++..+  ++|+       ..++....+. .........+....  ++++..++++.+..   ..+..+|+.++
T Consensus       381 lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          381 LVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVV-MEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             EEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECC-CCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred             EEEEEEeCCEEEEEEEecccccccccCCccceEEC-CCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            455666677544  4554       2222023322 11112222331111  34555455554433   45777787766


Q ss_pred             c
Q 016134          353 M  353 (394)
Q Consensus       353 ~  353 (394)
                      +
T Consensus       460 ~  460 (751)
T 2xe4_A          460 S  460 (751)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.34  E-value=0.1  Score=48.79  Aligned_cols=209  Identities=13%  Similarity=0.052  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .|+..++... .....+. ....+..++|++.+..|+-.. ..+.|  ++++......+...                  
T Consensus        97 ~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~------------------  156 (386)
T 3v65_B           97 DIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST------------------  156 (386)
T ss_dssp             CEEEECTTSC-CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS------------------
T ss_pred             cceeeccCCC-cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC------------------
Confidence            4666776544 2222222 345678999998666665544 33444  44444332221100                  


Q ss_pred             cCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CC-CcEEEEEeC
Q 016134          231 QDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LD-HTIKVWFAT  303 (394)
Q Consensus       231 ~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~D-g~i~vwd~~  303 (394)
                        + ......|+++   +.++++-...+.|.+.++........+.........++++  +..|+.+. .. +.|..+++.
T Consensus       157 --~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          157 --G-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             --S-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             --C-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence              0 1112233443   3445555667789988887544333334344567888887  45554444 34 678888775


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAG  382 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg  382 (394)
                      ... ...+.. ........+  +++|++..++++-...+.|..+|+........+.. ......|++..+.++++-...+
T Consensus       234 G~~-~~~~~~-~~~~~PnGl--avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~  309 (386)
T 3v65_B          234 GSG-RRIIAD-THLFWPNGL--TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTK  309 (386)
T ss_dssp             SCS-CEEEEC-SSCSCEEEE--EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTT
T ss_pred             CCC-cEEEEE-CCCCCeeeE--EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCC
Confidence            432 222221 111112222  35766665777777788999999875433333322 3457788884333666777778


Q ss_pred             eEEEEeC
Q 016134          383 MLGVWKL  389 (394)
Q Consensus       383 ~I~vWd~  389 (394)
                      .|..++.
T Consensus       310 ~V~~~~~  316 (386)
T 3v65_B          310 SINSANK  316 (386)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEC
Confidence            8888873

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.32  E-value=0.08  Score=48.87  Aligned_cols=151  Identities=11%  Similarity=-0.021  Sum_probs=89.1

Q ss_pred             CEEEEEec--CCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeE
Q 016134          237 PVTCLAVG--RSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       237 ~V~~l~~~--~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .+..++|+  .+. +++-...+.|..+++........+.........++++  +. +.++-...+.|.+.++.... ...
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~  152 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV  152 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEE
Confidence            45677776  344 4454567889999988655444333333445667765  44 44555567889999986433 222


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCC-CeEEEEECCCCceeEEEe-cCCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACND-NTVHLYELPSFMERGRIF-SKHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      +... .......+  +++|.+..++++-... +.|..+++........+. .-...+.|+++|++  ++++-...+.|..
T Consensus       153 l~~~-~l~~P~~i--avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          153 LLWQ-SLEKPRAI--ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             EECT-TCSCEEEE--EEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEeC-CCCCcceE--EEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            2211 11122222  2477655466766655 889988886533222111 23458899999865  5555556678888


Q ss_pred             EeCCC
Q 016134          387 WKLLA  391 (394)
Q Consensus       387 Wd~~~  391 (394)
                      ++++.
T Consensus       230 ~~~dG  234 (349)
T 3v64_C          230 ANLDG  234 (349)
T ss_dssp             EETTS
T ss_pred             EeCCC
Confidence            88764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.25  E-value=0.11  Score=48.70  Aligned_cols=151  Identities=11%  Similarity=-0.017  Sum_probs=88.1

Q ss_pred             CEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeE
Q 016134          237 PVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       237 ~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      ....++|+  .+ ++++-...+.|..+++........+.........++++  +. ++++-...+.|.+.++.... ...
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~  195 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV  195 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEE
Confidence            45677776  34 44455567889999988665444333333344556665  44 44555556788888875433 222


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCC-CeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACND-NTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      +... .......+  ..+|.+..++++-... +.|..+++........... -...+.|+++|++  ++++=...+.|..
T Consensus       196 l~~~-~l~~P~gi--avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          196 LLWQ-SLEKPRAI--ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             EECS-SCSCEEEE--EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eecC-CCCCCcEE--EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence            2211 11122222  2477666466666555 7898888875433332222 4458899999865  5555556678888


Q ss_pred             EeCCC
Q 016134          387 WKLLA  391 (394)
Q Consensus       387 Wd~~~  391 (394)
                      ++++.
T Consensus       273 ~d~dG  277 (386)
T 3v65_B          273 ANLDG  277 (386)
T ss_dssp             ECTTS
T ss_pred             EeCCC
Confidence            88764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.23  E-value=0.046  Score=48.96  Aligned_cols=141  Identities=7%  Similarity=0.071  Sum_probs=72.0

Q ss_pred             cCCeEEEEeCC-----CeEEEEeCCCCc--eeEEEcCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEeCCCceeeEe
Q 016134          244 GRSRLCSGSMD-----NTIRVWELDTLE--PVMTLNDHTDAPMSLLCWDQFLLSCSLD-----HTIKVWFATGRGNLEAA  311 (394)
Q Consensus       244 ~~~~l~sgs~D-----g~V~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~l~s~s~D-----g~i~vwd~~~~~~~~~~  311 (394)
                      ++.+++.|+.+     ..+.+||+.+.+  .+..+......-..+.+.+.+++.|+.+     ..+.+||+.+.+-... 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-  190 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-  190 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC-
Confidence            44555555543     468899987754  2333322222223344446666666654     4688899876543222 


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeEE--EecCC-cEEEEEECCCC-EEEEEeCC-
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERGR--IFSKH-EVRVIEIGPDK-LFFTGDGA-  381 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~~~-~v~~l~~sp~~-~l~tgs~D-  381 (394)
                      ..........+..   .-+++ +++.|+.+     ..+.+||+.+.+-...  +.... ....+.+  ++ +++.|+.+ 
T Consensus       191 ~~~p~~r~~~~~~---~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (301)
T 2vpj_A          191 TPMATKRSGAGVA---LLNDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDG  264 (301)
T ss_dssp             CCCSSCCBSCEEE---EETTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCcccccceEE---EECCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCC
Confidence            1111111111111   11455 77777664     4689999987643322  11111 1222222  45 66666655 


Q ss_pred             ----CeEEEEeCCC
Q 016134          382 ----GMLGVWKLLA  391 (394)
Q Consensus       382 ----g~I~vWd~~~  391 (394)
                          ..|.+||+.+
T Consensus       265 ~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          265 NSLLSSIECYDPII  278 (301)
T ss_dssp             SSBEEEEEEEETTT
T ss_pred             CcccccEEEEcCCC
Confidence                3577888765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.17  E-value=0.05  Score=50.01  Aligned_cols=141  Identities=12%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------CC---EEEEEe-C--CCcEEEEEeC-CCceeeEee
Q 016134          246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------DQ---FLLSCS-L--DHTIKVWFAT-GRGNLEAAY  312 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~~---~l~s~s-~--Dg~i~vwd~~-~~~~~~~~~  312 (394)
                      .+++.....+-+.+||+ +++.++.+..  +.+..+..-      ++   ++++.. .  +++|.+|++. ....+..+.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            55666677889999999 7899988864  455555544      22   233333 3  5899999884 222344442


Q ss_pred             cc--c--CC-cceEEEEeeECCC-CCcEEEEEeCCCeEEEEECC-------CCceeEEEecCCcEEEEEECCCC-EEEEE
Q 016134          313 TH--K--ED-NGVLALGGLNDPD-GKPVLICACNDNTVHLYELP-------SFMERGRIFSKHEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       313 ~~--~--~~-~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~-------~~~~~~~~~~~~~v~~l~~sp~~-~l~tg  378 (394)
                      ..  .  .. .....++..-+|. ++.++++...++.+..|++.       +.+.+.++.....+-.+...+.. .|+.+
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEe
Confidence            11  1  11 2223333223564 55467778888999999983       23556666667789999999876 99999


Q ss_pred             eCCCeEEEEeC
Q 016134          379 DGAGMLGVWKL  389 (394)
Q Consensus       379 s~Dg~I~vWd~  389 (394)
                      -+|.-|..++.
T Consensus       198 eEd~GIw~~da  208 (355)
T 3amr_A          198 EEDEAIWKFSA  208 (355)
T ss_dssp             ETTTEEEEEEC
T ss_pred             cccceEEEEeC
Confidence            99966544443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.17  E-value=0.13  Score=46.31  Aligned_cols=199  Identities=8%  Similarity=-0.050  Sum_probs=107.0

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCC-CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      +.+..+... .....++|+++++++++-..++.|+.+.. +........                      ......+++
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~----------------------~~~p~gia~   79 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV----------------------EGKVSGLAF   79 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC----------------------SSEEEEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeC----------------------CCCceeEEE
Confidence            455555433 56788999999987777666777644332 122111111                      124556666


Q ss_pred             c--CCeEEEEeC-CC-eEEEEeCCCCceeEEEcC-CCCCcEEEEEc-CCEEEEEe-CCCcEEEEEeCCCc-eeeEeec--
Q 016134          244 G--RSRLCSGSM-DN-TIRVWELDTLEPVMTLND-HTDAPMSLLCW-DQFLLSCS-LDHTIKVWFATGRG-NLEAAYT--  313 (394)
Q Consensus       244 ~--~~~l~sgs~-Dg-~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~-~~~l~s~s-~Dg~i~vwd~~~~~-~~~~~~~--  313 (394)
                      +  ++++++... ++ .|..+|..+++....... .......++.. +..++... .++.|.++|...+. .+.....  
T Consensus        80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~  159 (306)
T 2p4o_A           80 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML  159 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG
T ss_pred             cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcc
Confidence            5  444443322 22 466677777765432221 11222344433 44444444 57888888876432 1111110  


Q ss_pred             ----c-cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC-Cce--eEEEecCCcEEEEEECCCC-EEEEEeCCCeE
Q 016134          314 ----H-KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS-FME--RGRIFSKHEVRVIEIGPDK-LFFTGDGAGML  384 (394)
Q Consensus       314 ----~-~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~-~~~--~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I  384 (394)
                          . ........+    +++++.++++-...+.|..|++.. +..  ...+........++++++| ++++....+.|
T Consensus       160 ~~~~~~~~~~~pngi----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          160 ARSNSESVFPAANGL----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             SCSSTTCCSCSEEEE----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             ccccccCCCCcCCCc----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeE
Confidence                0 000112222    667775777777789999999875 321  1122212345678899999 55555567788


Q ss_pred             EEEeCC
Q 016134          385 GVWKLL  390 (394)
Q Consensus       385 ~vWd~~  390 (394)
                      .+++..
T Consensus       236 ~~~~~~  241 (306)
T 2p4o_A          236 VRIAPD  241 (306)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            888753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.14  E-value=0.15  Score=46.46  Aligned_cols=214  Identities=13%  Similarity=0.033  Sum_probs=116.2

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .|+..++.........+......+.+|+|++.+..|+-+. ..+.|  +++.......                .++.. 
T Consensus        14 ~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~----------------~~~~~-   76 (318)
T 3sov_A           14 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ----------------NVVVS-   76 (318)
T ss_dssp             EEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC----------------EEEEE-
T ss_pred             eEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE----------------EEEcC-
Confidence            6788888654211111222234567899988655555443 33444  3333331100                00000 


Q ss_pred             cCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcEEEEEeC
Q 016134          231 QDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTIKVWFAT  303 (394)
Q Consensus       231 ~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i~vwd~~  303 (394)
                        + ......++++   ++++++-...+.|.++++........+.........++++  +..|+.+..  .+.|...++.
T Consensus        77 --~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           77 --G-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             --C-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             --C-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence              0 1122344443   3455555667899999987543333333444567888887  455555542  5678888775


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCCEEEEEeCCC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDKLFFTGDGAG  382 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~~l~tgs~Dg  382 (394)
                      . .....+... .-....  .+++++++..++++-...+.|..+|+........+. .......+++..++++++-...+
T Consensus       154 G-~~~~~~~~~-~l~~Pn--glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~  229 (318)
T 3sov_A          154 G-SSRFIIINS-EIYWPN--GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTH  229 (318)
T ss_dssp             S-CSCEEEECS-SCSCEE--EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTT
T ss_pred             C-CCeEEEEEC-CCCCcc--EEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCC
Confidence            3 222222211 111122  223577666577777778999999987543322222 23456778886554677766778


Q ss_pred             eEEEEeCCC
Q 016134          383 MLGVWKLLA  391 (394)
Q Consensus       383 ~I~vWd~~~  391 (394)
                      .|..++..+
T Consensus       230 ~V~~~~~~~  238 (318)
T 3sov_A          230 SILACNKYT  238 (318)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            888888744

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.02  E-value=0.088  Score=47.11  Aligned_cols=213  Identities=11%  Similarity=0.089  Sum_probs=100.3

Q ss_pred             CeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-------eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          153 RFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-------AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       153 ~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      ..+.++|+.+.. ..+..+......-..+.+  ++..++.|+.++.       ++|..+.+-..+.....          
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~----------   97 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD----------   97 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS----------
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc----------
Confidence            467888887652 122112111111112222  5667777776543       46666665544322110          


Q ss_pred             EEEEEecCCCCCCEEEEEecCCeEEEEeCCC-----eEEEEeCCCCceeE--EEcCCCCCcEEEEEcCCEEEEEeCC---
Q 016134          225 MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN-----TIRVWELDTLEPVM--TLNDHTDAPMSLLCWDQFLLSCSLD---  294 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg-----~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~D---  294 (394)
                               .......+.+++.+++.|+.++     .+.+||+.+.+-..  .+.........+.+.+.+++.|+.+   
T Consensus        98 ---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  168 (302)
T 2xn4_A           98 ---------RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS  168 (302)
T ss_dssp             ---------CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred             ---------cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC
Confidence                     0011112233455566666443     57889987754222  1221112223333446666666542   


Q ss_pred             ----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeEE--EecCCc
Q 016134          295 ----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERGR--IFSKHE  363 (394)
Q Consensus       295 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~~~~  363 (394)
                          ..+.+||+.+.+-... ..........+..   .-+++ +++.|+.+     ..+.+||+.+.+-...  +.....
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  243 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYI-AEMSTRRSGAGVG---VLNNL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR  243 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEE---EETTE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CccccEEEEEeCCCCcEEEC-CCCccccccccEE---EECCE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence                3588899876532222 1111111111111   11455 77777654     4689999987643221  111111


Q ss_pred             EEEEEECCCC-EEEEEeCCC-----eEEEEeCCCC
Q 016134          364 VRVIEIGPDK-LFFTGDGAG-----MLGVWKLLAK  392 (394)
Q Consensus       364 v~~l~~sp~~-~l~tgs~Dg-----~I~vWd~~~~  392 (394)
                      -.+++.. ++ +++.|+.++     .|.+||+.+.
T Consensus       244 ~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          244 NAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             cCeEEEE-CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            1122222 45 666666553     4888887653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.92  E-value=0.25  Score=45.49  Aligned_cols=209  Identities=12%  Similarity=0.014  Sum_probs=113.6

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .|+..++... .....+. ....+..++|++....|+-+. ..+.|  ++++......+..                   
T Consensus        54 ~I~~i~~~g~-~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-------------------  112 (349)
T 3v64_C           54 DIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------------------  112 (349)
T ss_dssp             CEEEECTTSC-CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------
T ss_pred             ceEEEeCCCC-eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-------------------
Confidence            4566666543 3333333 334578999998766666554 33444  4444333221100                   


Q ss_pred             cCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CC-CcEEEEEeC
Q 016134          231 QDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LD-HTIKVWFAT  303 (394)
Q Consensus       231 ~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~D-g~i~vwd~~  303 (394)
                        ........++++   +.++++-...+.|.+.++........+.........++++  +..|+... .. +.|..+++.
T Consensus       113 --~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          113 --TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             --SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             --CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence              001122344443   3445555667899999987544333333344567888887  44444443 44 678888875


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAG  382 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg  382 (394)
                      .. ....+.. ........  ++++|++..++++-...+.|..+|+........+.. ......|++..+.++++-...+
T Consensus       191 G~-~~~~~~~-~~~~~PnG--la~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~  266 (349)
T 3v64_C          191 GS-GRRIIAD-THLFWPNG--LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTK  266 (349)
T ss_dssp             SC-SCEESCC-SSCSCEEE--EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTT
T ss_pred             CC-CcEEEEE-CCCCCcce--EEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCC
Confidence            32 2222221 11112222  235776665777777788999999875433322322 3456788884333666666777


Q ss_pred             eEEEEeC
Q 016134          383 MLGVWKL  389 (394)
Q Consensus       383 ~I~vWd~  389 (394)
                      .|..++.
T Consensus       267 ~V~~~~~  273 (349)
T 3v64_C          267 SINSANK  273 (349)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEc
Confidence            8877763

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.81  E-value=0.28  Score=44.40  Aligned_cols=151  Identities=14%  Similarity=0.070  Sum_probs=85.5

Q ss_pred             CCEEEEEec--CCe-EEEEeCCCeEEEEeCCC----CceeEEEcCCCCCcEEEEEc--CCEE-EEEeCCCcEEEEEeCCC
Q 016134          236 RPVTCLAVG--RSR-LCSGSMDNTIRVWELDT----LEPVMTLNDHTDAPMSLLCW--DQFL-LSCSLDHTIKVWFATGR  305 (394)
Q Consensus       236 ~~V~~l~~~--~~~-l~sgs~Dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~Dg~i~vwd~~~~  305 (394)
                      .....++|+  ++. +++-..++.|..+|+..    ......+......+..++++  +..| ++-...+.|.+.|+...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            345667776  334 44545578999999875    22222233233455677775  4444 45556789999998643


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-CeEEEEECCCCceeEEEec--CCcEEEEEECCCC--EEEEEeC
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-NTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK--LFFTGDG  380 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~--~l~tgs~  380 (394)
                      . ...+.... ......+  ..+|.+..++++.... +.|..+++... ....+..  -.....|++++++  ++++-..
T Consensus       110 ~-~~~~~~~~-~~~P~~i--avdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          110 K-RKTLFREN-GSKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             S-EEEEEECT-TCCEEEE--EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             c-eEEEEECC-CCCcceE--EeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECC
Confidence            3 22222211 1122222  3477665466655443 78888887643 3333322  4468899999876  4455556


Q ss_pred             CCeEEEEeCCC
Q 016134          381 AGMLGVWKLLA  391 (394)
Q Consensus       381 Dg~I~vWd~~~  391 (394)
                      .+.|..++++.
T Consensus       185 ~~~I~~~d~dg  195 (316)
T 1ijq_A          185 LHSISSIDVNG  195 (316)
T ss_dssp             TTEEEEEETTS
T ss_pred             CCeEEEEecCC
Confidence            67899988764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.12  Score=49.13  Aligned_cols=146  Identities=8%  Similarity=0.003  Sum_probs=87.7

Q ss_pred             CEEEEEecC---CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-CC----cEEEEEeCCCc
Q 016134          237 PVTCLAVGR---SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-DH----TIKVWFATGRG  306 (394)
Q Consensus       237 ~V~~l~~~~---~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-Dg----~i~vwd~~~~~  306 (394)
                      ....|++++   +.|+.+...+.|+.+|+.+++... +.........++++  +++|+.+.. ++    .+.+++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            345566662   456666555889999998765443 33345567889988  675655554 22    2333443 222


Q ss_pred             ee--eEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC--EEEEEe
Q 016134          307 NL--EAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK--LFFTGD  379 (394)
Q Consensus       307 ~~--~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~--~l~tgs  379 (394)
                      ..  ..+..... ...++    ++| ++. ++++-..++.|..++............  ......|+|+|++  ++++-.
T Consensus       216 ~~~~~~l~~~~~-p~gia----vdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          216 FKVITELTKGQN-CNGAE----THPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             SCSEEEEEECSS-CCCEE----ECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             eeeeeeeccCCC-ceEEE----EeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            21  22222222 22233    488 566 777777788999999987654222222  3457899999999  444455


Q ss_pred             CCCeEEEEeCC
Q 016134          380 GAGMLGVWKLL  390 (394)
Q Consensus       380 ~Dg~I~vWd~~  390 (394)
                      ..+.|..++.+
T Consensus       290 ~~~~I~~~~~d  300 (430)
T 3tc9_A          290 NQHYILRSDYD  300 (430)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEeCC
Confidence            67789888765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.75  E-value=0.16  Score=46.25  Aligned_cols=151  Identities=8%  Similarity=0.052  Sum_probs=92.6

Q ss_pred             EEEEec--CCeEEEEe-CCCeEEEEeCCCCceeEE-EcCC----CC--CcEEEEE---c--CCEEEEEe-----------
Q 016134          239 TCLAVG--RSRLCSGS-MDNTIRVWELDTLEPVMT-LNDH----TD--APMSLLC---W--DQFLLSCS-----------  292 (394)
Q Consensus       239 ~~l~~~--~~~l~sgs-~Dg~V~iwd~~~~~~~~~-~~~h----~~--~v~~l~~---~--~~~l~s~s-----------  292 (394)
                      .++.|+  ...|+.++ ..++|..||...+..... +..-    ..  .+..|.+   +  +.++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            456786  35666666 689999999975543322 2221    11  2478888   4  34554333           


Q ss_pred             --CCCcEEEEEeC---CCceeeEeecc--cCC-------cceEEEEeeECCCCCcEEEEEeCC-CeEEEEECCCCceeEE
Q 016134          293 --LDHTIKVWFAT---GRGNLEAAYTH--KED-------NGVLALGGLNDPDGKPVLICACND-NTVHLYELPSFMERGR  357 (394)
Q Consensus       293 --~Dg~i~vwd~~---~~~~~~~~~~~--~~~-------~~~~~~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~~~~~~~  357 (394)
                        .+..|..+|+.   +++.+....-.  ...       ....+..+..+++|+ ..++++.- +.|...+.... .+..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCC-EEee
Confidence              16789999998   66555443311  110       112233445689999 77778777 77777766543 2222


Q ss_pred             Ee-c------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          358 IF-S------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       358 ~~-~------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      +. .      ....+.|+++|++ +|+....++.|..+|+..
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            22 1      1236799999999 666666699999999763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.69  E-value=0.44  Score=45.20  Aligned_cols=214  Identities=6%  Similarity=-0.046  Sum_probs=114.5

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc-----eeecCCCcEEEecCCCCcEEEEEEcCCEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT-----AWNIESSAEFSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l  226 (394)
                      ..|+.+|+.++ . +..+.........|+|++++++|+.+... +.     +|....+...       ....+.      
T Consensus       159 ~~I~~id~~~~-~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~-------~~~~l~------  223 (430)
T 3tc9_A          159 HPTRLIDFEKE-Y-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK-------VITELT------  223 (430)
T ss_dssp             EEEEEEETTTT-E-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC-------SEEEEE------
T ss_pred             CcEEEEECCCC-E-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee-------eeeeec------
Confidence            47888998765 3 33333455678899999999966666543 21     2222222110       000000      


Q ss_pred             EEEecCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc--CCEE-EEEeCCCcEEE
Q 016134          227 FAGAQDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW--DQFL-LSCSLDHTIKV  299 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~~~l-~s~s~Dg~i~v  299 (394)
                         .    ......++++   +.++++-..++.|..+|..++.....+.. .......++++  +++| ++-...+.|..
T Consensus       224 ---~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          224 ---K----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             ---E----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ---c----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence               0    1122344554   34455555678999999986654222221 22456788888  6744 44456788999


Q ss_pred             EEeCCC-ce---eeEeeccc---C---------C-cceE-EEEeeE------CCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          300 WFATGR-GN---LEAAYTHK---E---------D-NGVL-ALGGLN------DPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       300 wd~~~~-~~---~~~~~~~~---~---------~-~~~~-~~~~~~------s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      ++.... ..   +..+....   .         . .... .+...-      ++++. ++++-...+.|+.++ .++...
T Consensus       297 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~v~  374 (430)
T 3tc9_A          297 SDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGRVT  374 (430)
T ss_dssp             EEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSEEE
T ss_pred             EeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCcEE
Confidence            887532 11   11121110   0         0 0011 111000      23455 667666778899988 445333


Q ss_pred             EEEec---------C---------CcEEEEEECC-CC-EEEEEeCCCeEEEEeCC
Q 016134          356 GRIFS---------K---------HEVRVIEIGP-DK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       356 ~~~~~---------~---------~~v~~l~~sp-~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .....         .         .....|+++| ++ ++++-.....|+.++++
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            22211         0         1488999999 46 55555567788888764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.69  E-value=0.15  Score=45.52  Aligned_cols=189  Identities=11%  Similarity=0.073  Sum_probs=92.9

Q ss_pred             ccccCCCeecCCCCCeEEEEEcCCC----ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-------eeecCCCcEE
Q 016134          139 CHWLLGNCVRGDECRFLHSWFCGEG----LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-------AWNIESSAEF  207 (394)
Q Consensus       139 ~~~~~~~~~~g~~~~~i~iWd~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~  207 (394)
                      ..|+.++.........+.++|..+.    ++.+..+......-..+.+  +++.++.|+.++.       ++|..+.+-.
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            3445555443334457889998765    3333333222222222222  5677777776543       4666665543


Q ss_pred             EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCC-----CeEEEEeCCCCceeEE--EcCCCCCcEE
Q 016134          208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD-----NTIRVWELDTLEPVMT--LNDHTDAPMS  280 (394)
Q Consensus       208 ~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D-----g~V~iwd~~~~~~~~~--~~~h~~~v~~  280 (394)
                      .+....                   .....-.++.+++.+++.|+.+     ..+.+||+.+.+-...  +.........
T Consensus       142 ~~~~~p-------------------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  202 (301)
T 2vpj_A          142 MLGDMQ-------------------TAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV  202 (301)
T ss_dssp             EEEECS-------------------SCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ECCCCC-------------------CCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceE
Confidence            321110                   0001112223345556666544     4688999887542221  1111122233


Q ss_pred             EEEcCCEEEEEeCC-----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECC
Q 016134          281 LLCWDQFLLSCSLD-----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELP  350 (394)
Q Consensus       281 l~~~~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~  350 (394)
                      +.+.+.+++.|+.+     ..+.+||+.+.+-.. +.............   .-+++ +++.|+.+     ..|.+||+.
T Consensus       203 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~---~~~~~-i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          203 ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTSMTTPRCYVGAT---VLRGR-LYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE---EETTE-EEEECCBCSSSBEEEEEEEETT
T ss_pred             EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE-CCCCCCcccceeEE---EECCE-EEEEcCcCCCcccccEEEEcCC
Confidence            44446666777653     468899987654322 22111111111111   12555 77777655     468889988


Q ss_pred             CCc
Q 016134          351 SFM  353 (394)
Q Consensus       351 ~~~  353 (394)
                      +.+
T Consensus       278 ~~~  280 (301)
T 2vpj_A          278 IDS  280 (301)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            754

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.68  E-value=0.29  Score=42.92  Aligned_cols=195  Identities=11%  Similarity=0.104  Sum_probs=111.3

Q ss_pred             EEecccCCCeEEEEecCCCCEEEEE-eCCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          168 AKLEGHEKAVSGIALPLRSDKLFSG-SRDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~~~l~sg-s~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      +.+.+-.+.+..|+|+|+++.|++. ..++.|  .|.+ ++.+...         .+          .+ ......|++.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i---------~l----------~g-~~D~EGIa~~   78 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI---------PL----------DF-VKDLETIEYI   78 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE---------EC----------SS-CSSEEEEEEC
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE---------ec----------CC-CCChHHeEEe
Confidence            4566777789999999987777764 445555  4444 4433211         00          01 1234455554


Q ss_pred             -CCeE-EEEeCCCeEEEEeCCCCce---eEEEc------CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC---Ccee
Q 016134          245 -RSRL-CSGSMDNTIRVWELDTLEP---VMTLN------DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG---RGNL  308 (394)
Q Consensus       245 -~~~l-~sgs~Dg~V~iwd~~~~~~---~~~~~------~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~---~~~~  308 (394)
                       ++.+ ++.-.++.+.++++.....   +....      ........|+++  ++.|+++.+.....+|.+..   ...+
T Consensus        79 ~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l  158 (255)
T 3qqz_A           79 GDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL  158 (255)
T ss_dssp             STTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence             2333 3333556777777654331   22221      123456899998  55677777655556666541   1112


Q ss_pred             eEeec-------ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC----------CcEEEEEECC
Q 016134          309 EAAYT-------HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK----------HEVRVIEIGP  371 (394)
Q Consensus       309 ~~~~~-------~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----------~~v~~l~~sp  371 (394)
                      .....       .......+    .++|....+++.......|.++|.. ++.+..+...          ...-.|+|.+
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l----~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGA----EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEE----EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred             eeecchhhccccccCCceeE----EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC
Confidence            22111       01112223    3477766688888888999999977 4455554432          2578999999


Q ss_pred             CCEEEEEeCCCeEEEEe
Q 016134          372 DKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       372 ~~~l~tgs~Dg~I~vWd  388 (394)
                      +|.|+..++-+.+..+.
T Consensus       234 ~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          234 SGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             TCCEEEEETTTEEEEEE
T ss_pred             CCCEEEEcCCceEEEEE
Confidence            99555557777666664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.68  E-value=0.07  Score=53.04  Aligned_cols=139  Identities=9%  Similarity=-0.096  Sum_probs=86.5

Q ss_pred             CeEEEEeCCCCceeEEEcC--CC-------CCcEEEEE---cC---CEEEEEeCCCcEEEEEeCCCceeeEeecccCC--
Q 016134          255 NTIRVWELDTLEPVMTLND--HT-------DAPMSLLC---WD---QFLLSCSLDHTIKVWFATGRGNLEAAYTHKED--  317 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~--h~-------~~v~~l~~---~~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~--  317 (394)
                      +.|.-+|.++++.+-.++.  |.       ....-+..   .+   ..++.++.+|.+.++|.++++.+-........  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            6899999999999887753  32       11122222   24   37888999999999999988876554332100  


Q ss_pred             ----------------------------cceEEE-----------EeeECCCCCcEEEEEe-------------------
Q 016134          318 ----------------------------NGVLAL-----------GGLNDPDGKPVLICAC-------------------  339 (394)
Q Consensus       318 ----------------------------~~~~~~-----------~~~~s~~g~~~l~sgs-------------------  339 (394)
                                                  ......           ..+++|+...+++...                   
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                                        000000           1134555542333221                   


Q ss_pred             -------------CCCeEEEEECCCCceeEEEecCCcEEEEE-ECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          340 -------------NDNTVHLYELPSFMERGRIFSKHEVRVIE-IGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       340 -------------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~-~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                                   .++.|..||+.+++.+-+......+..-. ...+++++.++.|+.|+.||..+..
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence                         36889999999998887766533332211 1234588889999999999987753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.67  E-value=0.28  Score=44.06  Aligned_cols=176  Identities=9%  Similarity=0.009  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC----CCc---------eeecCCCcEEEecCCCCcEEEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR----DGT---------AWNIESSAEFSLDGPVGEVYSMV  220 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----Dg~---------vWd~~~~~~~~~~~~~~~v~~l~  220 (394)
                      .+.+||..++......+..........+...+++.++.|+.    ++.         ++|..+.+-..+.....+-.   
T Consensus        14 ~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---   90 (315)
T 4asc_A           14 GAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC---   90 (315)
T ss_dssp             EEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE---
T ss_pred             ceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh---
Confidence            68889988774333333322223333333457788888874    111         46666665443321111000   


Q ss_pred             EcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCC--------CeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEE
Q 016134          221 VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD--------NTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLS  290 (394)
Q Consensus       221 ~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D--------g~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s  290 (394)
                                  .|    ..+.+.+.+++.|+.+        ..+.+||+.+.+-  +..+......-..+.+.+.+++.
T Consensus        91 ------------~~----~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~  154 (315)
T 4asc_A           91 ------------LF----GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVI  154 (315)
T ss_dssp             ------------SC----EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred             ------------ce----eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEE
Confidence                        11    1122334555555532        4688999987542  21222112222333444666677


Q ss_pred             EeC-C-----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC-----eEEEEECCCCc
Q 016134          291 CSL-D-----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----TVHLYELPSFM  353 (394)
Q Consensus       291 ~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----~I~iwd~~~~~  353 (394)
                      |+. +     ..+.+||+.+.+-.. +..........+..   .-+++ +++.|+.++     .+.+||+.+.+
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGAT---VHDGR-IIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE---EETTE-EEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             eCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceEEE---EECCE-EEEEeccCCCCccceEEEEECCCCe
Confidence            765 2     468889987653221 11111111111111   11555 777776544     58899998764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.66  E-value=0.29  Score=45.95  Aligned_cols=152  Identities=13%  Similarity=0.008  Sum_probs=86.2

Q ss_pred             CCEEEEEec--CCe-EEEEeCCCeEEEEeCCCC----ceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCC
Q 016134          236 RPVTCLAVG--RSR-LCSGSMDNTIRVWELDTL----EPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       236 ~~V~~l~~~--~~~-l~sgs~Dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~  305 (394)
                      ..+..|+|+  .+. +++-...+.|+.+++...    .....+......+..++++  +. +.++-...+.|.+.++...
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~  191 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  191 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence            456677776  344 444445688888888652    2233333344556777776  44 4455556788988888644


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC-CCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EE-EEEeCC
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN-DNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF-FTGDGA  381 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l-~tgs~D  381 (394)
                      .....+....  .....+  +.+|.+..++++-.. .+.|...++........+.. -...+.|++++++ .| ++=...
T Consensus       192 ~~~~l~~~~~--~~P~~i--avdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          192 KRKTLFRENG--SKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             SEEEEEECSS--CCEEEE--EEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEeCCC--CCcceE--EEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            3322222111  112222  247765535555433 47888888875433333332 3568999999876 44 444456


Q ss_pred             CeEEEEeCCC
Q 016134          382 GMLGVWKLLA  391 (394)
Q Consensus       382 g~I~vWd~~~  391 (394)
                      ..|..++++.
T Consensus       268 ~~I~~~d~dG  277 (400)
T 3p5b_L          268 HSISSIDVNG  277 (400)
T ss_dssp             TEEEEEETTS
T ss_pred             CEEEEEeCCC
Confidence            7888888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.61  E-value=0.13  Score=46.24  Aligned_cols=144  Identities=8%  Similarity=0.034  Sum_probs=71.0

Q ss_pred             ecCCeEEEEeCC-----CeEEEEeCCCCceeE--EEcCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEeCCCceeeE
Q 016134          243 VGRSRLCSGSMD-----NTIRVWELDTLEPVM--TLNDHTDAPMSLLCWDQFLLSCSLD-----HTIKVWFATGRGNLEA  310 (394)
Q Consensus       243 ~~~~~l~sgs~D-----g~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~D-----g~i~vwd~~~~~~~~~  310 (394)
                      +++.+++.|+.+     ..+.+||+.+.+-..  .+......-..+.+.+.+++.|+.+     ..+.+||+.+.+-.. 
T Consensus       120 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-  198 (308)
T 1zgk_A          120 IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM-  198 (308)
T ss_dssp             ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE-
T ss_pred             ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEee-
Confidence            345555555533     468899988754221  1221112223333446666666654     458889987653221 


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeEE--EecCCcEEEEEECCCC-EEEEEeCC-
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERGR--IFSKHEVRVIEIGPDK-LFFTGDGA-  381 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~~~~v~~l~~sp~~-~l~tgs~D-  381 (394)
                      +..........+.. .+  +++ +++.|+.+     ..+.+||+.+.+-...  +.....-.++... ++ +++.|+.+ 
T Consensus       199 ~~~~p~~r~~~~~~-~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~  273 (308)
T 1zgk_A          199 ITAMNTIRSGAGVC-VL--HNC-IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDG  273 (308)
T ss_dssp             CCCCSSCCBSCEEE-EE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCS
T ss_pred             CCCCCCccccceEE-EE--CCE-EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCC
Confidence            11111111111111 12  455 77777654     5699999987643221  1111111122222 44 66666643 


Q ss_pred             ----CeEEEEeCCCC
Q 016134          382 ----GMLGVWKLLAK  392 (394)
Q Consensus       382 ----g~I~vWd~~~~  392 (394)
                          ..|.+||+.+.
T Consensus       274 ~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          274 HTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCBCCEEEEEETTTT
T ss_pred             CcccceEEEEcCCCC
Confidence                35778887653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.59  E-value=0.41  Score=43.47  Aligned_cols=187  Identities=11%  Similarity=0.011  Sum_probs=97.7

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCceeecCC-CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEE
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGTAWNIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLC  249 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~  249 (394)
                      +.+.+..|.+.+++..++.+ .++.||.... ++......                    ..+...+..+.+.  +.+++
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~--------------------~~~~~~~~~~~~~~~~~~~~  178 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALV--------------------QEAIGVMRNLNRSPSGEYVA  178 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEE--------------------CSCCCCEEEEEECTTSCEEE
T ss_pred             CCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEee--------------------cCCCcceEEEEEcCCCcEEE
Confidence            44567888887766655554 4666654433 43321100                    0223455666665  33444


Q ss_pred             EEeCCCeEE-EEeC--CCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeecc--cCCcceEEE
Q 016134          250 SGSMDNTIR-VWEL--DTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTH--KEDNGVLAL  323 (394)
Q Consensus       250 sgs~Dg~V~-iwd~--~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~  323 (394)
                      .+ .++.+. -.|-  .+.+.+.  ......+..+.+. ...++.++.+|.+++.+...++....+...  ........+
T Consensus       179 ~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v  255 (327)
T 2xbg_A          179 VS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL  255 (327)
T ss_dssp             EE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred             EE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence            44 444443 3442  3333332  2344567888876 334556667888777642212222222111  011122333


Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                        .+.+++. +++++ .++.| ++....++.-..+..    ...+..+.|.+++.++.++.+|.|.-++
T Consensus       256 --~~~~~~~-~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          256 --AYRTPNE-VWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             --EESSSSC-EEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             --EecCCCE-EEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence              3567776 66655 46766 344554544444332    3457888887666777888899877665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.58  E-value=0.5  Score=44.35  Aligned_cols=214  Identities=10%  Similarity=0.032  Sum_probs=117.5

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .|+..++... ... .+......+..|+|++.+..|+-+.. .+.|  +++......      .....       ++   
T Consensus        93 ~I~~i~l~~~-~~~-~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~------~~~~~-------~~---  154 (400)
T 3p5b_L           93 EVRKMTLDRS-EYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SSYDT-------VI---  154 (400)
T ss_dssp             EEEEECTTSC-SCE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CCCEE-------EE---
T ss_pred             eeEEEccCCc-cee-EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC------CcceE-------EE---
Confidence            6777777654 222 22334567889999987666665543 3444  333321100      00000       00   


Q ss_pred             cCCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcEEEEEeC
Q 016134          231 QDGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTIKVWFAT  303 (394)
Q Consensus       231 ~~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i~vwd~~  303 (394)
                       .........|+++   ++++++-...+.|.+.|++.......+.........|+++  +.+|+....  .+.|...++.
T Consensus       155 -~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          155 -SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             -eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence             0112344555654   4455555667899999988655444444344567888887  455555442  3678888875


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCCEEEEEeC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDKLFFTGDG  380 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~~l~tgs~  380 (394)
                      ... ...+... .-.....+  ++++++..++++-...+.|..+|+........+..   .....+|++..+.++++-..
T Consensus       234 G~~-~~~~~~~-~l~~P~gl--avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~  309 (400)
T 3p5b_L          234 GVD-IYSLVTE-NIQWPNGI--TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII  309 (400)
T ss_dssp             SCS-CEEEECS-SCSCEEEE--EEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESS
T ss_pred             CCc-cEEEEEC-CCCceEEE--EEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCC
Confidence            432 2222211 11122222  34776665777767788999999875433333322   23466788754446667777


Q ss_pred             CCeEEEEeCC
Q 016134          381 AGMLGVWKLL  390 (394)
Q Consensus       381 Dg~I~vWd~~  390 (394)
                      .+.|..++..
T Consensus       310 ~~~V~~~~~~  319 (400)
T 3p5b_L          310 NEAIFSANRL  319 (400)
T ss_dssp             SCSEEEEESS
T ss_pred             CCeEEEEEcC
Confidence            7888888743

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.54  E-value=0.63  Score=47.88  Aligned_cols=153  Identities=12%  Similarity=0.018  Sum_probs=86.8

Q ss_pred             CCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCC----ceeEEEcCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEeCC
Q 016134          235 TRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTL----EPVMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       235 ~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~----~~~~~~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~vwd~~~  304 (394)
                      ...+..|+|+  .+ ++++-...+.|+.+++...    .....+......+..|+++  + .++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3456677775  33 4455555678888888752    2233333344556677776  5 4555555678999999864


Q ss_pred             CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-CeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EE-EEEeC
Q 016134          305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-NTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF-FTGDG  380 (394)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l-~tgs~  380 (394)
                      .. ...+.... ......+  +++|.+..++++-..+ +.|...++........+.. -...+.|++++.+ .| ++=..
T Consensus       503 ~~-~~~l~~~~-l~~P~gI--aVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          503 VK-RKTLFREN-GSKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             SS-EEEEEECT-TCCEEEE--EEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             Ce-EEEEEeCC-CCCcceE--EEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            33 33332211 1122222  2467655366654333 7899998875444333332 3578999999765 44 44445


Q ss_pred             CCeEEEEeCCC
Q 016134          381 AGMLGVWKLLA  391 (394)
Q Consensus       381 Dg~I~vWd~~~  391 (394)
                      ...|...++.-
T Consensus       579 ~~~I~~~d~dG  589 (791)
T 3m0c_C          579 LHSISSIDVNG  589 (791)
T ss_dssp             TTEEEEEETTS
T ss_pred             CCcEEEEecCC
Confidence            56788887754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.42  E-value=1  Score=48.50  Aligned_cols=140  Identities=17%  Similarity=0.125  Sum_probs=87.1

Q ss_pred             CeEEEEe----------CCCeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeec
Q 016134          246 SRLCSGS----------MDNTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYT  313 (394)
Q Consensus       246 ~~l~sgs----------~Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  313 (394)
                      .+|++|.          ..|.|.+|++..++.  +... ...++|++++-.+.+|+++- ..+|++|++...+.+.....
T Consensus       845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~~~~~  922 (1158)
T 3ei3_A          845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELRTECN  922 (1158)
T ss_dssp             CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEEEEee
Confidence            5777776          357899999864432  2222 24688999987755555554 47899999987654441111


Q ss_pred             ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC--CCceeEEEec--CCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP--SFMERGRIFS--KHEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       314 ~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~--~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                      .........+.    ..+. +++.|..-..|.++..+  ..+....-..  ...++++.+-.++.++.+..+|.|.+...
T Consensus       923 ~~~~i~~~~l~----~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          923 HYNNIMALYLK----TKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             ECCCSCEEEEE----EETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEE
T ss_pred             ccccEEEEEEe----ccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEec
Confidence            11111222231    2344 77778777777776544  3322222222  55699999887778888999999999887


Q ss_pred             CCC
Q 016134          390 LAK  392 (394)
Q Consensus       390 ~~~  392 (394)
                      +.+
T Consensus       998 ~~~ 1000 (1158)
T 3ei3_A          998 DSA 1000 (1158)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.38  E-value=0.53  Score=42.47  Aligned_cols=210  Identities=10%  Similarity=0.030  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCce--eecCCC---cE-EEecCCCCcEEEEEEcCCEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGTA--WNIESS---AE-FSLDGPVGEVYSMVVANEML  226 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~v--Wd~~~~---~~-~~~~~~~~~v~~l~~~~~~l  226 (394)
                      .|+..|+.+. +....+ .....+.+++|++++..|+-+.. ++.|  +++...   .. ..+                 
T Consensus        11 ~I~~i~~~~~-~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-----------------   71 (316)
T 1ijq_A           11 EVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-----------------   71 (316)
T ss_dssp             SEEEEETTSC-CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-----------------
T ss_pred             eEEEEECCCc-ceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-----------------
Confidence            5777787654 223333 33456789999987666665544 4445  333331   10 000                 


Q ss_pred             EEEecCCCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC--CcEEE
Q 016134          227 FAGAQDGHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD--HTIKV  299 (394)
Q Consensus       227 ~~~~~~~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D--g~i~v  299 (394)
                      +    .........|+++  ++ ++++-...+.|.+.|+........+.........++++  +..|+.+...  +.|..
T Consensus        72 ~----~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~  147 (316)
T 1ijq_A           72 I----SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  147 (316)
T ss_dssp             E----CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             E----eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEE
Confidence            0    0111223445553  44 44555667899999987544333333334567888887  4555555443  67888


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCCEEE
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDKLFF  376 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~~l~  376 (394)
                      .++.. .....+... .-.....  +++++++..++++-...+.|..+|+...........   ......|++..+.+++
T Consensus       148 ~~~dG-~~~~~~~~~-~~~~P~g--la~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~  223 (316)
T 1ijq_A          148 GGLNG-VDIYSLVTE-NIQWPNG--ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW  223 (316)
T ss_dssp             EETTS-CCEEEEECS-SCSCEEE--EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEE
T ss_pred             EcCCC-CCeEEEEEC-CCCCceE--EEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEE
Confidence            87743 333332211 1112222  235777665777777788999999975332222221   2346788885433666


Q ss_pred             EEeCCCeEEEEeCC
Q 016134          377 TGDGAGMLGVWKLL  390 (394)
Q Consensus       377 tgs~Dg~I~vWd~~  390 (394)
                      +-...+.|..++..
T Consensus       224 ~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          224 TDIINEAIFSANRL  237 (316)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EECCCCeEEEEeCC
Confidence            66677888888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.38  E-value=0.21  Score=44.61  Aligned_cols=189  Identities=15%  Similarity=0.122  Sum_probs=91.5

Q ss_pred             ccccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-------eeecCCCcEEEec
Q 016134          139 CHWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-------AWNIESSAEFSLD  210 (394)
Q Consensus       139 ~~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~~~~  210 (394)
                      ..|+.++.........+.++|..+.. +.+..+......-..+.+  +++.++.|+.++.       ++|..+.+-..+.
T Consensus        63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            34444444333334568889987652 222222221122222222  5677777776653       4677666554432


Q ss_pred             CCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeC-------CCeEEEEeCCCCceeE--EEcCCCCCcEEE
Q 016134          211 GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSM-------DNTIRVWELDTLEPVM--TLNDHTDAPMSL  281 (394)
Q Consensus       211 ~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~-------Dg~V~iwd~~~~~~~~--~~~~h~~~v~~l  281 (394)
                      ....+                   .....++.+++.+++.|+.       -..+.+||+.+.+-..  .+.........+
T Consensus       141 ~~p~~-------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  201 (302)
T 2xn4_A          141 PMNTR-------------------RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG  201 (302)
T ss_dssp             CCSSC-------------------CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             CCCCc-------------------ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE
Confidence            21110                   0111122234455555543       2458899988754222  222111222334


Q ss_pred             EEcCCEEEEEeCC-----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC-----eEEEEECCC
Q 016134          282 LCWDQFLLSCSLD-----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN-----TVHLYELPS  351 (394)
Q Consensus       282 ~~~~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg-----~I~iwd~~~  351 (394)
                      .+.+.+++.|+.+     ..+.+||+.+.+-.. +.............   ..+++ +++.|+.++     .+.+||+.+
T Consensus       202 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~---~~~~~-i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          202 VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVC---AVNGL-LYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             EETTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE---EETTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             EECCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEE---EECCE-EEEECCcCCCcccccEEEEcCCC
Confidence            4446677777654     468899987653222 22111111111111   12555 777776553     489999887


Q ss_pred             Cc
Q 016134          352 FM  353 (394)
Q Consensus       352 ~~  353 (394)
                      .+
T Consensus       277 ~~  278 (302)
T 2xn4_A          277 DK  278 (302)
T ss_dssp             TE
T ss_pred             Ce
Confidence            64

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.35  E-value=0.32  Score=43.46  Aligned_cols=143  Identities=8%  Similarity=0.014  Sum_probs=72.2

Q ss_pred             ecCCeEEEEeCC------CeEEEEeCCCCceeE--EEcCCCCCcEEEEEcCCEEEEEeC---------CCcEEEEEeCCC
Q 016134          243 VGRSRLCSGSMD------NTIRVWELDTLEPVM--TLNDHTDAPMSLLCWDQFLLSCSL---------DHTIKVWFATGR  305 (394)
Q Consensus       243 ~~~~~l~sgs~D------g~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~---------Dg~i~vwd~~~~  305 (394)
                      +.+.+++.|+.+      ..+.+||+.+.+-..  .+......-..+.+.+.+++.|+.         -..+.+||+.+.
T Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            345566666654      468899988754222  111111222333344666666653         345889998765


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeE--EEec-CCcEEEEEECCCC-EEE
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERG--RIFS-KHEVRVIEIGPDK-LFF  376 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~--~~~~-~~~v~~l~~sp~~-~l~  376 (394)
                      +-.. +..........+.. ..  +++ +++.|+.+     ..+.+||+.+.+-..  .+.. .....++.+  ++ +++
T Consensus       180 ~W~~-~~~~p~~r~~~~~~-~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v  252 (306)
T 3ii7_A          180 TWTE-LCPMIEARKNHGLV-FV--KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYV  252 (306)
T ss_dssp             EEEE-ECCCSSCCBSCEEE-EE--TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEE
T ss_pred             eEEE-CCCccchhhcceEE-EE--CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEE
Confidence            3222 21111111111111 11  455 67766643     468899998764221  1111 112223333  45 777


Q ss_pred             EEeCC-----CeEEEEeCCCC
Q 016134          377 TGDGA-----GMLGVWKLLAK  392 (394)
Q Consensus       377 tgs~D-----g~I~vWd~~~~  392 (394)
                      .|+.+     ..+.+||+.+.
T Consensus       253 ~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          253 LAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EECBCSSSBCCEEEEEETTTT
T ss_pred             EeCcCCCeeeeeEEEEcCCCC
Confidence            77744     46788887653

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=96.29  E-value=0.00066  Score=47.15  Aligned_cols=30  Identities=30%  Similarity=0.611  Sum_probs=25.4

Q ss_pred             CCCCceeEEEeeeCccCC-CCCccccccCCC
Q 016134           33 WPTNKVVCVYVLEGRCNR-NPCRFAHTESSS   62 (394)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~-~~~~~~h~~~p~   62 (394)
                      ......||+||++|.|.+ ..|+|.|...+.
T Consensus        12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~   42 (72)
T 2rhk_C           12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT   42 (72)
T ss_dssp             SCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT
T ss_pred             CCCcCeeCHHHhcCCCCCCCCCCCccccccc
Confidence            455788999999999999 789999986553

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.23  E-value=0.001  Score=46.90  Aligned_cols=31  Identities=29%  Similarity=0.596  Sum_probs=26.1

Q ss_pred             CCCCCceeEEEeeeCccCC-CCCccccccCCC
Q 016134           32 GWPTNKVVCVYVLEGRCNR-NPCRFAHTESSS   62 (394)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~p~   62 (394)
                      .+.....+|+||++|.|.+ ..|+|.|...+.
T Consensus         5 ~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~   36 (77)
T 2d9n_A            5 SSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT   36 (77)
T ss_dssp             CSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT
T ss_pred             CCCCcceeCHhHccCcCCCCCCCCCccccccC
Confidence            3556788999999999999 789999987653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.12  E-value=0.63  Score=42.13  Aligned_cols=150  Identities=13%  Similarity=0.034  Sum_probs=84.6

Q ss_pred             EEEEEec---CCeEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCcEEEEEc--C-CEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          238 VTCLAVG---RSRLCSGSMDNTIRVWELDTLEP-VMTLNDHTDAPMSLLCW--D-QFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       238 V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~-~~~~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      ..+++|+   +.++.+-...+.|..+++..... ...+......+..+++.  + .++++-...+.|.++++.... ...
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~  115 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKV  115 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEE
Confidence            4566775   34455555678899999876532 11222222345566665  4 445555567889999986432 222


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      +.. ........+  ..+|.+..++++-. ..+.|..+++........+.. -...+.|++++++  ++++=...+.|..
T Consensus       116 l~~-~~~~~P~gi--avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          116 LFW-QELDQPRAI--ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             EEC-SSCSSEEEE--EEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEe-CCCCCccEE--EEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            221 111122222  23665553555542 357888888764332222222 3457899999865  4555556778988


Q ss_pred             EeCCC
Q 016134          387 WKLLA  391 (394)
Q Consensus       387 Wd~~~  391 (394)
                      ++++.
T Consensus       193 ~d~dG  197 (318)
T 3sov_A          193 SNLDG  197 (318)
T ss_dssp             EETTS
T ss_pred             EcCCC
Confidence            88763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.11  E-value=0.98  Score=42.84  Aligned_cols=212  Identities=8%  Similarity=-0.027  Sum_probs=113.4

Q ss_pred             CeEEEEecCC--CCEEEEEeCCCce--eecCCCcEEEecCCCCcEEEEEEcCC-EEEEEecCCC---------------C
Q 016134          176 AVSGIALPLR--SDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQDGH---------------T  235 (394)
Q Consensus       176 ~V~~l~~s~~--~~~l~sgs~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~~h---------------~  235 (394)
                      ....|+|+|+  ...|+.+...+.|  +|.+++....+.........+++.++ .|+++....+               .
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            3567777774  3445544443444  55556665555555555677777766 3333322110               0


Q ss_pred             --------CCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE-cC-CCCCcEEEEEc--CCEE-EEEeCCCcEEE
Q 016134          236 --------RPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL-ND-HTDAPMSLLCW--DQFL-LSCSLDHTIKV  299 (394)
Q Consensus       236 --------~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~-h~~~v~~l~~~--~~~l-~s~s~Dg~i~v  299 (394)
                              .....++++   +.++++-..++.|+.+|..+++....+ .. .......++++  ++.| ++-...+.|+.
T Consensus       220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence                    111234444   233444445678999998877652332 21 22233468887  6644 44455678999


Q ss_pred             EEeCC--Cce--eeEeecccCC-----------cceEEEEeeE---------CCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          300 WFATG--RGN--LEAAYTHKED-----------NGVLALGGLN---------DPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       300 wd~~~--~~~--~~~~~~~~~~-----------~~~~~~~~~~---------s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      +++..  +..  ...+......           .......+++         .+++. ++++-...+.|+.++. ++. +
T Consensus       300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~-~G~-v  376 (433)
T 4hw6_A          300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP-EGR-V  376 (433)
T ss_dssp             EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT-TSE-E
T ss_pred             EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC-CCC-E
Confidence            88653  211  1122111000           0001112334         56666 7777777889999985 453 3


Q ss_pred             EEEecC-------------------CcEEEEEEC-CCC-EEEEEeCCCeEEEEeCC
Q 016134          356 GRIFSK-------------------HEVRVIEIG-PDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       356 ~~~~~~-------------------~~v~~l~~s-p~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ..+...                   .....|+++ +++ ++++=...++|+.++++
T Consensus       377 ~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          377 TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            333221                   237899999 667 55555567788888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.07  E-value=0.052  Score=55.23  Aligned_cols=140  Identities=11%  Similarity=0.020  Sum_probs=78.7

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEe-CC-CcEEEEEeCCCceeeEeecc-cCCcc
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCS-LD-HTIKVWFATGRGNLEAAYTH-KEDNG  319 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~D-g~i~vwd~~~~~~~~~~~~~-~~~~~  319 (394)
                      ++++++-...+.|.++++........+.........|+++  +.+|+.+. .. +.|.++++.... ...+... .....
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPN  543 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCcc
Confidence            3445555567889999987544333333223445667775  34444333 22 677777764322 2222111 11122


Q ss_pred             eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          320 VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      .++    ++|++..++++-...+.|..+++..... ..+..    ......|++..+.++++-...+.|..++..
T Consensus       544 Gla----vd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          544 GIT----LDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             CEE----ECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             EEE----EeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence            343    4877665777777788999999875332 23322    123455666555566666677888888753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.02  E-value=0.47  Score=45.11  Aligned_cols=147  Identities=9%  Similarity=-0.018  Sum_probs=85.2

Q ss_pred             CCEEEEEecC----CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC----c-EEEEEeCC
Q 016134          236 RPVTCLAVGR----SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH----T-IKVWFATG  304 (394)
Q Consensus       236 ~~V~~l~~~~----~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg----~-i~vwd~~~  304 (394)
                      .....|++++    ..|+.+...+.|+.+|+.+++... +.........++++  ++ |+.+...+    . +...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            3456778873    566666555899999998766544 44345567888888  66 44444321    1 22233221


Q ss_pred             Ccee-eEeecccCCcceEEEEeeECC-CCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCC-EE-EE
Q 016134          305 RGNL-EAAYTHKEDNGVLALGGLNDP-DGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDK-LF-FT  377 (394)
Q Consensus       305 ~~~~-~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~l-~t  377 (394)
                      .... ..+..... ...++    ++| ++. ++++-..++.|+.+|..++.....+..   ......++|+|++ .| ++
T Consensus       217 ~~~~~~~~~~~~~-P~gia----vd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          217 GFTERLSLCNARG-AKTCA----VHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TTCCEEEEEECSS-BCCCE----ECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             CeeccccccccCC-CCEEE----EeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            1110 11111111 12222    478 666 777666778999999987765333322   2234579999998 44 44


Q ss_pred             EeCCCeEEEEeCC
Q 016134          378 GDGAGMLGVWKLL  390 (394)
Q Consensus       378 gs~Dg~I~vWd~~  390 (394)
                      -...+.|+.++++
T Consensus       291 d~~~~~I~~~~~d  303 (433)
T 4hw6_A          291 YNGKHCIYRVDYN  303 (433)
T ss_dssp             ETTTTEEEEEEBC
T ss_pred             eCCCCEEEEEeCC
Confidence            4566789988765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.94  E-value=0.99  Score=41.40  Aligned_cols=217  Identities=13%  Similarity=0.124  Sum_probs=119.2

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCC----CC---EEEEEeCC---Cc--eeec--CCCcEEEecCCCCcEEE
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLR----SD---KLFSGSRD---GT--AWNI--ESSAEFSLDGPVGEVYS  218 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~----~~---~l~sgs~D---g~--vWd~--~~~~~~~~~~~~~~v~~  218 (394)
                      +-+.++|+ ++ +.++.+..  +.++.+.+-|+    ++   ++++...+   .+  ++++  .++....+.....++. 
T Consensus        50 ~gL~Vydl-~G-~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~-  124 (355)
T 3amr_A           50 SGLVVYSL-DG-KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA-  124 (355)
T ss_dssp             TEEEEEET-TS-CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEE-
T ss_pred             CCEEEEcC-CC-cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcC-
Confidence            36999999 55 66777754  56777777663    22   22333332   33  5765  3443222211100010 


Q ss_pred             EEEcCCEEEEEecCCCCCCEEEEEe--c---CC-eEEEEeCCCeEEEEeCC-------CCceeEEEcCCCCCcEEEEEc-
Q 016134          219 MVVANEMLFAGAQDGHTRPVTCLAV--G---RS-RLCSGSMDNTIRVWELD-------TLEPVMTLNDHTDAPMSLLCW-  284 (394)
Q Consensus       219 l~~~~~~l~~~~~~~h~~~V~~l~~--~---~~-~l~sgs~Dg~V~iwd~~-------~~~~~~~~~~h~~~v~~l~~~-  284 (394)
                                    .-...+..+++  +   +. ++++...+|.+..|++.       +.+.+++|... +.+-.+..+ 
T Consensus       125 --------------t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd  189 (355)
T 3amr_A          125 --------------TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD  189 (355)
T ss_dssp             --------------CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET
T ss_pred             --------------CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC
Confidence                          00133344444  3   22 57777888999999882       34567777743 567777777 


Q ss_pred             -CCEEEEEeCCCcEEEEEeCC-----CceeeEeecccCCcceEEEEeeECCCCC-cEEEEEeCCCeEEEEECC-CCceeE
Q 016134          285 -DQFLLSCSLDHTIKVWFATG-----RGNLEAAYTHKEDNGVLALGGLNDPDGK-PVLICACNDNTVHLYELP-SFMERG  356 (394)
Q Consensus       285 -~~~l~s~s~Dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~l~sgs~dg~I~iwd~~-~~~~~~  356 (394)
                       ...|+.+-++.-|..+|.+-     .+.+..+....-....-.+.....++++ ++|++.-.+++..+||.. +.+.+.
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence             57899999987776667542     2233222111000122223333456666 355555467899999997 667777


Q ss_pred             EEec-----------CCc--EEEEEEC---CCCEEEEEeC---------CCeEEEEeC
Q 016134          357 RIFS-----------KHE--VRVIEIG---PDKLFFTGDG---------AGMLGVWKL  389 (394)
Q Consensus       357 ~~~~-----------~~~--v~~l~~s---p~~~l~tgs~---------Dg~I~vWd~  389 (394)
                      .+.-           ...  |..+.+.   |.|++++-..         +...++.++
T Consensus       270 ~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~~~qnFk~v~w  327 (355)
T 3amr_A          270 DFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQKANQNFKIVPW  327 (355)
T ss_dssp             EEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEEH
T ss_pred             EEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCCcCceEEEEEH
Confidence            7631           112  3444442   4566766554         466777664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.85  E-value=1.7  Score=43.37  Aligned_cols=212  Identities=12%  Similarity=0.004  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cce--eecCCCcE--EEecCCCCcEEEEEEcCCEEEE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GTA--WNIESSAE--FSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~v--Wd~~~~~~--~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      .|+.-++.........+...-....+|+|++.+..|+-+... +.|  ++++....  ..+.                  
T Consensus        19 ~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~------------------   80 (619)
T 3s94_A           19 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------------------   80 (619)
T ss_dssp             BEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC------------------
T ss_pred             cEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe------------------
Confidence            567777754321222233344567899999877776655443 333  33332211  0000                  


Q ss_pred             EecCCCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcEEEEE
Q 016134          229 GAQDGHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTIKVWF  301 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i~vwd  301 (394)
                          .-......|+++  ++ ++++-...+.|.+.++........+.........|+++  +.+|+....  ...|...+
T Consensus        81 ----~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~  156 (619)
T 3s94_A           81 ----SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  156 (619)
T ss_dssp             ----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             ----CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence                111345566665  34 45555667899999987544333333344556788886  445555443  35666666


Q ss_pred             eCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-cCCcEEEEEECCCCEEEEEeC
Q 016134          302 ATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVRVIEIGPDKLFFTGDG  380 (394)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp~~~l~tgs~  380 (394)
                      +.. .....+.... -.....+  .+++++..++++-...+.|..+|+.......... ......+|++..+.++++-..
T Consensus       157 ~dG-~~~~~l~~~~-~~~P~Gl--ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~  232 (619)
T 3s94_A          157 MDG-SSRFIIINSE-IYWPNGL--TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWS  232 (619)
T ss_dssp             TTS-CSCEEEECSS-CSSEEEE--EEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTT
T ss_pred             CCC-CceEEEEeCC-CCCCcEE--EEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCC
Confidence            543 3223332111 1122222  2467666577777777889999987543332222 122235677766645555556


Q ss_pred             CCeEEEEeCCC
Q 016134          381 AGMLGVWKLLA  391 (394)
Q Consensus       381 Dg~I~vWd~~~  391 (394)
                      .+.|...|..+
T Consensus       233 ~~~V~~~d~~t  243 (619)
T 3s94_A          233 THSILACNKYT  243 (619)
T ss_dssp             TCSEEEEESSS
T ss_pred             CCEEEEEECCC
Confidence            67788877654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.76  E-value=1  Score=40.30  Aligned_cols=105  Identities=8%  Similarity=0.035  Sum_probs=51.7

Q ss_pred             cCCeEEEEeCC-------CeEEEEeCCCCceeE--EEcCCCCCcEEEEEcCCEEEEEeC------CCcEEEEEeCCCcee
Q 016134          244 GRSRLCSGSMD-------NTIRVWELDTLEPVM--TLNDHTDAPMSLLCWDQFLLSCSL------DHTIKVWFATGRGNL  308 (394)
Q Consensus       244 ~~~~l~sgs~D-------g~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~------Dg~i~vwd~~~~~~~  308 (394)
                      .+.+++.|+.+       ..+.+||+.+.+-..  .+......-..+.+.+.+++.|+.      -..+.+||+.+.+-.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            45556666643       357888987654221  111111111233334666666653      235889998765422


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCc
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFM  353 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~  353 (394)
                      . +..........+..   .-+++ +++.|+.+     ..+.+||+.+.+
T Consensus       189 ~-~~~~p~~r~~~~~~---~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          189 D-LAPMKTPRSMFGVA---IHKGK-IVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             E-ECCCSSCCBSCEEE---EETTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             E-CCCCCCCcccceEE---EECCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence            2 21111111111111   11455 66666543     357789988764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.75  E-value=0.9  Score=40.39  Aligned_cols=187  Identities=7%  Similarity=-0.004  Sum_probs=90.5

Q ss_pred             cccCCCeecCCCCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCC-Cc-------eeecCCCcEEEec
Q 016134          140 HWLLGNCVRGDECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRD-GT-------AWNIESSAEFSLD  210 (394)
Q Consensus       140 ~~~~~~~~~g~~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~-------vWd~~~~~~~~~~  210 (394)
                      .|+.++.. ......+.++|..+.. +.+..+......-..+.+  ++++++.|+.+ +.       ++|..+.+-..+.
T Consensus        58 lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           58 VYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             EEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             EEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            44444433 3444578889987662 333333222222222222  56777777765 22       4677776654332


Q ss_pred             CCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeC---------CCeEEEEeCCCCceeE--EEcCCCCCcE
Q 016134          211 GPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSM---------DNTIRVWELDTLEPVM--TLNDHTDAPM  279 (394)
Q Consensus       211 ~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~---------Dg~V~iwd~~~~~~~~--~~~~h~~~v~  279 (394)
                      ....+                   ...-..+.+++.+++.|+.         -..+.+||+.+.+-..  .+......-.
T Consensus       135 ~~p~~-------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  195 (306)
T 3ii7_A          135 SMLTQ-------------------RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHG  195 (306)
T ss_dssp             CCSSC-------------------CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CCcCC-------------------cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcce
Confidence            11100                   0111122234445555543         3458899998754221  1111111223


Q ss_pred             EEEEcCCEEEEEeCC-----CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEEC
Q 016134          280 SLLCWDQFLLSCSLD-----HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYEL  349 (394)
Q Consensus       280 ~l~~~~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~  349 (394)
                      .+.+.+.+++.|+.+     ..+.+||+.+.+-. .+............. ..  ++. +++.|+.+     ..+.+||+
T Consensus       196 ~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~-~~--~~~-i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          196 LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK-MVSPMPWKGVTVKCA-AV--GSI-VYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EEEETTEEEEECCEETTEEBCCEEEEETTTTEEE-ECCCCSCCBSCCEEE-EE--TTE-EEEEECBCSSSBCCEEEEEET
T ss_pred             EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEE-ECCCCCCCccceeEE-EE--CCE-EEEEeCcCCCeeeeeEEEEcC
Confidence            333346666666543     46888998765322 221111111111111 11  455 77778744     56899999


Q ss_pred             CCCc
Q 016134          350 PSFM  353 (394)
Q Consensus       350 ~~~~  353 (394)
                      .+.+
T Consensus       271 ~~~~  274 (306)
T 3ii7_A          271 ETDK  274 (306)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            8764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.67  E-value=2.3  Score=43.68  Aligned_cols=148  Identities=12%  Similarity=0.030  Sum_probs=85.2

Q ss_pred             EEEEec--C-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC-C-CcEEEEEeCCCceeeEe
Q 016134          239 TCLAVG--R-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL-D-HTIKVWFATGRGNLEAA  311 (394)
Q Consensus       239 ~~l~~~--~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~-D-g~i~vwd~~~~~~~~~~  311 (394)
                      ..|+++  + +++++-...+.|.+.++........+.........|+++  ..+|+.... . ..|.+.++... ....+
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~l  552 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL  552 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEE
Confidence            345554  4 455666678899999997544433333344567888887  345555543 2 67888887543 33333


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                      .... ......+  ++++.+..++++-.....|..+++........+..   -....+|++..+.++++-...+.|...+
T Consensus       553 v~~~-l~~P~GL--avD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          553 VTEN-IQWPNGI--TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ECSS-CSCEEEE--EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EeCC-CCCceEE--EEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence            2211 1122222  23655554667666778999999875544333332   2245677775443555555667777776


Q ss_pred             CC
Q 016134          389 LL  390 (394)
Q Consensus       389 ~~  390 (394)
                      ..
T Consensus       630 k~  631 (791)
T 3m0c_C          630 RL  631 (791)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.67  E-value=0.7  Score=44.64  Aligned_cols=149  Identities=11%  Similarity=-0.054  Sum_probs=87.5

Q ss_pred             CEEEEEecC---CeEEEEeC-CCeEEEEeCCCCceeEEEcCC---CCCcEEEEE-------c--CCEEEEEeCCC-----
Q 016134          237 PVTCLAVGR---SRLCSGSM-DNTIRVWELDTLEPVMTLNDH---TDAPMSLLC-------W--DQFLLSCSLDH-----  295 (394)
Q Consensus       237 ~V~~l~~~~---~~l~sgs~-Dg~V~iwd~~~~~~~~~~~~h---~~~v~~l~~-------~--~~~l~s~s~Dg-----  295 (394)
                      ....|+|++   +.|+.+.. .+.|++.|+++++....+..-   ......++|       +  ++.|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            455677773   33444443 467999999876655444321   234788999       5  67666666543     


Q ss_pred             --cEEEEEeCC-Ccee-----eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC-------CCce------
Q 016134          296 --TIKVWFATG-RGNL-----EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP-------SFME------  354 (394)
Q Consensus       296 --~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~-------~~~~------  354 (394)
                        .|.+++... +...     ..+.....+ ..++    .+|++..++++-..++.|..+|+.       ++..      
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p-~gia----vdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQC-NGAT----IHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCC-CCEE----ECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCc-eEEE----EcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence              255665333 1211     122222222 2223    488555488888888999999987       4443      


Q ss_pred             -----eEEE---ecCCcEEEEEECCCC-EEEE-EeCCCeEEEEeCC
Q 016134          355 -----RGRI---FSKHEVRVIEIGPDK-LFFT-GDGAGMLGVWKLL  390 (394)
Q Consensus       355 -----~~~~---~~~~~v~~l~~sp~~-~l~t-gs~Dg~I~vWd~~  390 (394)
                           ...+   ......+.|+|+|++ .|+. =....+|+.++..
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                 1122   224457899999999 4444 4566788886643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.63  E-value=1.5  Score=43.77  Aligned_cols=152  Identities=12%  Similarity=0.049  Sum_probs=89.0

Q ss_pred             CCEEEEEec--CCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceee
Q 016134          236 RPVTCLAVG--RSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLE  309 (394)
Q Consensus       236 ~~V~~l~~~--~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~  309 (394)
                      ..+..|+|+  .+. +++-..++.|..+++........+......+..++++  +. +.++-...+.|.+.++.... ..
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~  115 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ  115 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence            345667776  344 4455567889999987544433333333456677775  44 45555567889999986433 22


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEE
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGV  386 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~v  386 (394)
                      .+... .-.....+  +.+|....++++- +..+.|...++...........-.....|++++++  ++++=...+.|..
T Consensus       116 ~l~~~-~l~~P~~i--avdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          116 VLVWK-DLDSPRAL--ALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             EEECS-SCCCEEEE--EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEeC-CCCCcccE--EEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            22211 11122222  3477544355554 23567888887655443333345678999999975  4445456678888


Q ss_pred             EeCCC
Q 016134          387 WKLLA  391 (394)
Q Consensus       387 Wd~~~  391 (394)
                      .++..
T Consensus       193 ~d~dG  197 (628)
T 4a0p_A          193 SNMLG  197 (628)
T ss_dssp             EETTS
T ss_pred             EcCCC
Confidence            88764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.62  E-value=0.59  Score=41.79  Aligned_cols=175  Identities=11%  Similarity=0.074  Sum_probs=84.2

Q ss_pred             CeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-------eeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          153 RFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-------AWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       153 ~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                      ..+.++|..+.. +.+..+......-..+.+  ++++++.|+.++.       ++|..+.+-..+.....          
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~----------  157 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT----------  157 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS----------
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc----------
Confidence            467888887652 222222211112222222  5677777765543       46776665443321110          


Q ss_pred             EEEEEecCCCCCCEEEEEecCCeEEEEeCC-----CeEEEEeCCCCcee--EEEcCCCCCcEEEEEcCCEEEEEeCC---
Q 016134          225 MLFAGAQDGHTRPVTCLAVGRSRLCSGSMD-----NTIRVWELDTLEPV--MTLNDHTDAPMSLLCWDQFLLSCSLD---  294 (394)
Q Consensus       225 ~l~~~~~~~h~~~V~~l~~~~~~l~sgs~D-----g~V~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~l~s~s~D---  294 (394)
                               ....-.++.+.+.+++.|+.+     ..+.+||+.+.+-.  ..+......-..+.+.+.+++.|+.+   
T Consensus       158 ---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  228 (308)
T 1zgk_A          158 ---------RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD  228 (308)
T ss_dssp             ---------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred             ---------cccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCC
Confidence                     001111222345555666543     46889998765421  11111112223344446666777654   


Q ss_pred             --CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCc
Q 016134          295 --HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFM  353 (394)
Q Consensus       295 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~  353 (394)
                        ..+.+||+.+.+-.. +.............   .-+++ +++.|+.+     ..+.+||+.+.+
T Consensus       229 ~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~---~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          229 QLNSVERYDVETETWTF-VAPMKHRRSALGIT---VHQGR-IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE---EETTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccceEEEEeCCCCcEEE-CCCCCCCccceEEE---EECCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence              568899987653222 21111111111111   11455 77777643     467888888754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.30  E-value=2.6  Score=42.00  Aligned_cols=212  Identities=12%  Similarity=-0.004  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEe-CCCcee--ecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGS-RDGTAW--NIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~vW--d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .|+.-++++...........-..+.+|+|++.+..|+-+. .++.|+  +++......+..                   
T Consensus        16 ~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-------------------   76 (628)
T 4a0p_A           16 DIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-------------------   76 (628)
T ss_dssp             EEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------------------
T ss_pred             cEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-------------------
Confidence            6778888654221111122345688999998766666544 444453  333222111100                   


Q ss_pred             cCCCCCCEEEEEe--c-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcEEEEEeC
Q 016134          231 QDGHTRPVTCLAV--G-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTIKVWFAT  303 (394)
Q Consensus       231 ~~~h~~~V~~l~~--~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i~vwd~~  303 (394)
                      . + ......|++  . ++++++-...+.|.+.++........+.........|+++  ...|+....  ...|...++.
T Consensus        77 ~-g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d  154 (628)
T 4a0p_A           77 F-G-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD  154 (628)
T ss_dssp             S-S-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             C-C-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC
Confidence            0 1 112334444  3 4455555667899999987543322233344567888887  345555542  4677777765


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCe
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGM  383 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~  383 (394)
                      ... ...+....  .....+  .+++++..++++-...+.|..+|+.................|++..+.++++-...+.
T Consensus       155 G~~-~~~l~~~~--~~P~Gl--alD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~  229 (628)
T 4a0p_A          155 GSE-RTTLVPNV--GRANGL--TIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRS  229 (628)
T ss_dssp             SCS-CEEEECSC--SSEEEE--EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTE
T ss_pred             CCc-eEEEECCC--CCcceE--EEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCE
Confidence            433 33332211  122222  3477666577777778899999997654422222234466888876436666666788


Q ss_pred             EEEEeCCC
Q 016134          384 LGVWKLLA  391 (394)
Q Consensus       384 I~vWd~~~  391 (394)
                      |...|..+
T Consensus       230 I~~~dk~t  237 (628)
T 4a0p_A          230 IERANKTS  237 (628)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            88887544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.27  E-value=1.4  Score=38.53  Aligned_cols=155  Identities=15%  Similarity=0.089  Sum_probs=90.8

Q ss_pred             CCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc-CCEE-EEEeCCCcEEEEEeCCCc
Q 016134          233 GHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW-DQFL-LSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       233 ~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~-~~~l-~s~s~Dg~i~vwd~~~~~  306 (394)
                      +-...+..|+++  ++ ++++...++.|...|+. ++.++.+.- -....-.|++. +..+ ++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            445678888887  34 45556778899999998 888877742 22456778887 3344 444457789999887655


Q ss_pred             eeeEeecc-------cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECC---CCceeEEEec--------CCcEEEEE
Q 016134          307 NLEAAYTH-------KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP---SFMERGRIFS--------KHEVRVIE  368 (394)
Q Consensus       307 ~~~~~~~~-------~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~---~~~~~~~~~~--------~~~v~~l~  368 (394)
                      .+......       ......-.+  +++|.++.+++ +.+.....||.+.   ....+..+..        ...+.+++
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGL--A~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGL--AYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEE--EEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             eeeeeeeeccccccccccCCcceE--EEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            32211111       111111222  35888874555 4444344455443   1111122211        23578999


Q ss_pred             ECCCC--EEEEEeCCCeEEEEeCCC
Q 016134          369 IGPDK--LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       369 ~sp~~--~l~tgs~Dg~I~vWd~~~  391 (394)
                      ++|..  +++.......|.++|.+.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCC
Confidence            99976  677777777888887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.07  E-value=4.6  Score=43.43  Aligned_cols=143  Identities=14%  Similarity=0.113  Sum_probs=87.3

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEE
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDH-TDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLAL  323 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  323 (394)
                      ++.++=... ..|++.+......+..+... ...|...+..+..++.++ .+.+.++.+..++ +.......-...+.++
T Consensus       483 ~~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~-L~~~~~~~l~~evscl  559 (1158)
T 3ei3_A          483 HQQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQE-LRQISHTEMEHEVACL  559 (1158)
T ss_dssp             TTEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTE-EEEEEEEECSSCEEEE
T ss_pred             CCeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc-eeeecccCCCCceEEE
Confidence            344444443 45788887666667777643 346777777777777775 6788888887643 2222222223344444


Q ss_pred             EeeECCCC---CcEEEEEeC-CCeEEEEECCCCceeEEEec--CCcEEEEEECC-CC--EEEEEeCCCeEEEEeCC
Q 016134          324 GGLNDPDG---KPVLICACN-DNTVHLYELPSFMERGRIFS--KHEVRVIEIGP-DK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       324 ~~~~s~~g---~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp-~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      .....+++   ..+++.|.. |++|+|+++++.+.+.....  .....++.+.. ++  +|..|-.||.+.-+.++
T Consensus       560 ~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          560 DITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             ECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             EeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            43222221   238888986 99999999998766654333  22344443332 23  89999999998766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.83  E-value=2.2  Score=38.54  Aligned_cols=204  Identities=9%  Similarity=0.043  Sum_probs=104.4

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCceeecCC-CcEEEec-----CCCCcEEEEEEcCCEEEEEecC--------------
Q 016134          173 HEKAVSGIALPLRSDKLFSGSRDGTAWNIES-SAEFSLD-----GPVGEVYSMVVANEMLFAGAQD--------------  232 (394)
Q Consensus       173 h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~-~~~~~~~-----~~~~~v~~l~~~~~~l~~~~~~--------------  232 (394)
                      -...+.+|.|.+++..++ ++.++.|+.... ++.-...     .....+..|.+.+..++++...              
T Consensus        34 ~~~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~  112 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWS  112 (327)
T ss_dssp             CSSCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSCE
T ss_pred             CCCcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCce
Confidence            345799999987777777 456676654433 3322111     1244688888877633333222              


Q ss_pred             ------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEe
Q 016134          233 ------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTL-NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFA  302 (394)
Q Consensus       233 ------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~  302 (394)
                            .+...+..|.+. ++.++.++.++.|..- .+.++.-..+ ..+...+..+.+.  +.+++. +.++.+..-+-
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~-g~~G~~~~S~d  190 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAV-SSRGSFYSTWE  190 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEE-ETTSSEEEEEC
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEE-ECCCcEEEEeC
Confidence                  122456777764 4455455556654321 2223322222 3455678888887  445544 45555443321


Q ss_pred             CCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe-----cCCcEEEEEECCCCEEEE
Q 016134          303 TGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-----SKHEVRVIEIGPDKLFFT  377 (394)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~~~v~~l~~sp~~~l~t  377 (394)
                      ..+.....+.. ........+  .+.+++. +++ .+.+|.+++.+...++....+.     ....+..+++.+++.++.
T Consensus       191 ~gG~tW~~~~~-~~~~~~~~~--~~~~~g~-~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (327)
T 2xbg_A          191 PGQTAWEPHNR-TTSRRLHNM--GFTPDGR-LWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL  265 (327)
T ss_dssp             TTCSSCEEEEC-CSSSCEEEE--EECTTSC-EEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred             CCCCceeECCC-CCCCcccee--EECCCCC-EEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence            11222222211 111222322  3578887 554 4567888776433233222221     123588999998874444


Q ss_pred             EeCCCeE
Q 016134          378 GDGAGML  384 (394)
Q Consensus       378 gs~Dg~I  384 (394)
                      ++.++.|
T Consensus       266 ~g~~g~i  272 (327)
T 2xbg_A          266 AGGAGAL  272 (327)
T ss_dssp             EESTTCE
T ss_pred             EeCCCeE
Confidence            4456766

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.49  E-value=0.052  Score=55.23  Aligned_cols=148  Identities=12%  Similarity=0.058  Sum_probs=79.7

Q ss_pred             EEEEEec--CCeEEEE-eCCCeEEEEeCCC----CceeEEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCce
Q 016134          238 VTCLAVG--RSRLCSG-SMDNTIRVWELDT----LEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGN  307 (394)
Q Consensus       238 V~~l~~~--~~~l~sg-s~Dg~V~iwd~~~----~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~  307 (394)
                      +..|+|+  .+.|+.+ ...+.|+.+++..    ......+......+..|++.   +.++++-...+.|.++++.... 
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-  486 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-  486 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-
Confidence            4455665  3444444 4567888888875    22222222112234456654   3444554567889999876443 


Q ss_pred             eeEeec-ccCCcceEEEEeeECCCCCcEEEEEeCC-CeEEEEECCCCceeEEEec--CCcEEEEEECCCC--EEEEEeCC
Q 016134          308 LEAAYT-HKEDNGVLALGGLNDPDGKPVLICACND-NTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK--LFFTGDGA  381 (394)
Q Consensus       308 ~~~~~~-~~~~~~~~~~~~~~s~~g~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~--~l~tgs~D  381 (394)
                      ...+.. .......++    ++|.+..++++-... +.|..+++... ....+..  -...+.|+|+|++  ++++-...
T Consensus       487 ~~~l~~~~~~~P~gia----vDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIV----VDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             EEEECCCSSCCCCCEE----CCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred             eEEEEeCCCCCcceEE----EccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCC
Confidence            222222 111122333    377655355554333 67888777543 2222322  3456789999876  55555667


Q ss_pred             CeEEEEeCCC
Q 016134          382 GMLGVWKLLA  391 (394)
Q Consensus       382 g~I~vWd~~~  391 (394)
                      +.|.++++..
T Consensus       562 ~~I~~~d~dG  571 (699)
T 1n7d_A          562 HSISSIDVNG  571 (699)
T ss_dssp             TEEEEECSSS
T ss_pred             CeEEEEccCC
Confidence            7899888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.35  E-value=3.1  Score=38.22  Aligned_cols=135  Identities=14%  Similarity=0.059  Sum_probs=73.0

Q ss_pred             CCCeEEEEeCCC--Cce-eEEEcC-----CCCCcEEEEEc----CC-EEEEEe-C--CCcEEEEEeCCCceeeEee-ccc
Q 016134          253 MDNTIRVWELDT--LEP-VMTLND-----HTDAPMSLLCW----DQ-FLLSCS-L--DHTIKVWFATGRGNLEAAY-THK  315 (394)
Q Consensus       253 ~Dg~V~iwd~~~--~~~-~~~~~~-----h~~~v~~l~~~----~~-~l~s~s-~--Dg~i~vwd~~~~~~~~~~~-~~~  315 (394)
                      .+|.|.++|+++  .+. ...+.+     ..-....+.+.    +. +|+.+. .  +.+|.+|++........+. ...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999974  221 112222     12356666663    22 444443 2  4678888876543222222 111


Q ss_pred             C--CcceEEEEeeECCCCCcEEEEEe-----------------CCCeEEEEECCCCceeEEEecCCcEEEEEECCCC--E
Q 016134          316 E--DNGVLALGGLNDPDGKPVLICAC-----------------NDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--L  374 (394)
Q Consensus       316 ~--~~~~~~~~~~~s~~g~~~l~sgs-----------------~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~  374 (394)
                      .  -.....  +...++|. ++++..                 ..+.|.-+|.  ++.......-...+.++|+||+  +
T Consensus       161 g~~~~~pND--~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          161 HKLLPSVND--IVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             CTTCSSEEE--EEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEE
T ss_pred             cCCCCCCce--EEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEE
Confidence            1  122222  23467787 666543                 1244555554  3322222234568999999999  4


Q ss_pred             EEEEeCCCeEEEEeCCCC
Q 016134          375 FFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       375 l~tgs~Dg~I~vWd~~~~  392 (394)
                      +++-+..+.|..|++...
T Consensus       236 Yvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             EEEEGGGTEEEEEEECTT
T ss_pred             EEEeCCCCeEEEEEECCC
Confidence            555556789999998643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.66  E-value=4  Score=37.00  Aligned_cols=48  Identities=8%  Similarity=-0.185  Sum_probs=25.2

Q ss_pred             CeEEEEeCCCCc--eeEEEcCCCCC-cEEEEEcCCEEEEEeC------CCcEEEEEe
Q 016134          255 NTIRVWELDTLE--PVMTLNDHTDA-PMSLLCWDQFLLSCSL------DHTIKVWFA  302 (394)
Q Consensus       255 g~V~iwd~~~~~--~~~~~~~h~~~-v~~l~~~~~~l~s~s~------Dg~i~vwd~  302 (394)
                      ..+.+||+.+.+  .+..+...... ...+.+.+.+++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence            578999998754  33333211111 2233333556666553      245677876

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.56  E-value=5.1  Score=37.90  Aligned_cols=232  Identities=10%  Similarity=0.103  Sum_probs=126.8

Q ss_pred             cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEc
Q 016134           81 LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFC  160 (394)
Q Consensus        81 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~  160 (394)
                      -+|..+|+.-=+.+++.|.|+++..-.+.-           ...     ..|.+|    +|+......-=.+..|+-|++
T Consensus        73 MnP~~~iiALrag~~lQiFnle~K~klks~-----------~~~-----e~VvfW----kWis~~~l~lVT~taVyHWsi  132 (494)
T 1bpo_A           73 MNPASKVIALKAGKTLQIFNIEMKSKMKAH-----------TMT-----DDVTFW----KWISLNTVALVTDNAVYHWSM  132 (494)
T ss_dssp             ECSSSSCEEEEETTEEEEEETTTTEEEEEE-----------ECS-----SCCCEE----EEEETTEEEEECSSEEEEEES
T ss_pred             eCCCCcEEEEecCCeEEEEchHHhhhhcce-----------ecC-----CCceEE----EecCCCeEEEEcCCeeEEecc
Confidence            457777775556899999999975521100           000     000011    233222111111237999999


Q ss_pred             CCCceEEEEecccC----CCeEEEEecCCCCEEEEEe---CCCc------eeecCCCcEEEecCCCCcEEEEEEcCCEEE
Q 016134          161 GEGLTMLAKLEGHE----KAVSGIALPLRSDKLFSGS---RDGT------AWNIESSAEFSLDGPVGEVYSMVVANEMLF  227 (394)
Q Consensus       161 ~~~~~~~~~l~~h~----~~V~~l~~s~~~~~l~sgs---~Dg~------vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~  227 (394)
                      +....+.+.+.-|.    ..|..-..+++.+.++-.+   .++.      +|..+.+....+.+|......+.+..+   
T Consensus       133 ~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~---  209 (494)
T 1bpo_A          133 EGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN---  209 (494)
T ss_dssp             SSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTC---
T ss_pred             cCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCC---
Confidence            76657777777664    4577777788888877444   2443      688888777777766554433333211   


Q ss_pred             EEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCC--------ceeEEE----cCCCCCcEEEEEc--CCEEEEEeC
Q 016134          228 AGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTL--------EPVMTL----NDHTDAPMSLLCW--DQFLLSCSL  293 (394)
Q Consensus       228 ~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~--------~~~~~~----~~h~~~v~~l~~~--~~~l~s~s~  293 (394)
                           .+...+.|++....      ..++++|-++...        +....+    +...+-..++..+  -..+..-..
T Consensus       210 -----~~~~~lf~fa~r~~------~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK  278 (494)
T 1bpo_A          210 -----AEESTLFCFAVRGQ------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (494)
T ss_dssp             -----SSEEEEEEEEECST------TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred             -----CCCceEEEEEEecC------CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence                 11122333332211      1368888888532        111111    1123445677777  457777888


Q ss_pred             CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCC
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS  351 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~  351 (394)
                      -|.|.+||+.++.++..-.-..+..-..+-   ....+.  +++-...|.|.--.+..
T Consensus       279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~---~~~~~G--i~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMNRISGETIFVTAP---HEATAG--IIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEE---ETTTTE--EEEEETTCEEEEEEECT
T ss_pred             CceEEEEecccceeeeeecccCCceEEecc---cCCCCc--EEEEccCceEEEEEEcc
Confidence            999999999999888766544433222111   122232  33344666665555444

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=93.53  E-value=0.011  Score=40.78  Aligned_cols=23  Identities=35%  Similarity=0.973  Sum_probs=19.9

Q ss_pred             CceeEEEeeeCccCCCCCccccc
Q 016134           36 NKVVCVYVLEGRCNRNPCRFAHT   58 (394)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~h~   58 (394)
                      ...||++|..|+|.|-.|+|+|.
T Consensus        41 ~~~vC~~flkG~C~r~~C~y~H~   63 (70)
T 3d2q_A           41 TVTVCMDYIKGRCSREKCKYFHP   63 (70)
T ss_dssp             EEEBCHHHHTTCCCCTTCCSBCC
T ss_pred             cceeccccCcCCCCCCCcCeeCC
Confidence            45689999999999999999995

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=93.40  E-value=0.013  Score=41.72  Aligned_cols=24  Identities=38%  Similarity=0.794  Sum_probs=21.1

Q ss_pred             ceeEEEeeeCccCCC--CCccccccC
Q 016134           37 KVVCVYVLEGRCNRN--PCRFAHTES   60 (394)
Q Consensus        37 ~~~~~~~~~~~~~~~--~~~~~h~~~   60 (394)
                      -.||++|.+|+|+|-  .|+|.|...
T Consensus         9 ~~VCr~FlrG~C~r~d~~C~f~H~~~   34 (83)
T 3d2n_A            9 LEVCREFQRGTCSRPDTECKFAHPSK   34 (83)
T ss_dssp             EEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred             chhcHHHhcCCCCCCCCCCCCcCCCc
Confidence            459999999999997  999999843

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.32  E-value=0.014  Score=43.04  Aligned_cols=24  Identities=42%  Similarity=0.830  Sum_probs=20.6

Q ss_pred             ceeEEEeeeCccCCC--CCccccccC
Q 016134           37 KVVCVYVLEGRCNRN--PCRFAHTES   60 (394)
Q Consensus        37 ~~~~~~~~~~~~~~~--~~~~~h~~~   60 (394)
                      ..||++|++|+|+|-  .|+|.|...
T Consensus        20 ~~VCr~FlrG~C~rgd~~C~FsH~~~   45 (98)
T 2e5s_A           20 LEVCREFQRGNCARGETDCRFAHPAD   45 (98)
T ss_dssp             EEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred             hhhhHHHhcCcCCCCCCCCCCcCCch
Confidence            349999999999996  699999843

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.25  E-value=6.2  Score=37.99  Aligned_cols=144  Identities=4%  Similarity=-0.054  Sum_probs=81.1

Q ss_pred             CeEEEEeCCCeEEEEeCC-------CCce-----------eEE-Ec-CCCCCcEEEEEc--CCEE-EEEeCCCcEEEEEe
Q 016134          246 SRLCSGSMDNTIRVWELD-------TLEP-----------VMT-LN-DHTDAPMSLLCW--DQFL-LSCSLDHTIKVWFA  302 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~-------~~~~-----------~~~-~~-~h~~~v~~l~~~--~~~l-~s~s~Dg~i~vwd~  302 (394)
                      .++++-..++.|..+|+.       +++.           ... +. ........|+++  +++| ++-.....|+.+|.
T Consensus       260 ~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          260 ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            445566677889999987       4443           112 21 223456789988  6644 44456678888765


Q ss_pred             CCCc-ee---eEeecc---cC---------C-cceEEEEeeEC------CCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134          303 TGRG-NL---EAAYTH---KE---------D-NGVLALGGLND------PDGKPVLICACNDNTVHLYELPSFMERGRIF  359 (394)
Q Consensus       303 ~~~~-~~---~~~~~~---~~---------~-~~~~~~~~~~s------~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~  359 (394)
                      .... .+   ..+...   ..         . .........-+      +++. ++++-.....|+.++ .++. +.++.
T Consensus       340 dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~-v~Tia  416 (496)
T 3kya_A          340 DEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGI-VSTYA  416 (496)
T ss_dssp             ETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCB-EEEEE
T ss_pred             CCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCC-EEEEe
Confidence            4321 11   122211   00         0 01110111112      4555 777777888999998 4553 33332


Q ss_pred             cC-------------------------CcEEEEEECCC-C-EEEEEeCCCeEEEEeCCCC
Q 016134          360 SK-------------------------HEVRVIEIGPD-K-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       360 ~~-------------------------~~v~~l~~sp~-~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ..                         .....|++.++ + ++++=....+|+.++++.+
T Consensus       417 G~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          417 GRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             ESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            21                         23788999997 7 5555556778999987654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.59  E-value=6.9  Score=36.82  Aligned_cols=140  Identities=15%  Similarity=0.116  Sum_probs=84.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCC----CCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce----------e
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDH----TDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN----------L  308 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~----------~  308 (394)
                      +..++.+- ++.||.-++......+.++..    -..|..+..+  |.+|+..+ +..|.|-.+..+..          +
T Consensus        32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence            55555543 588998888754444454432    2357778887  77888775 46899998873221          1


Q ss_pred             --eEeecccCC--cceEEEEeeECCCCCc--EEEEEeCCCeEEEEECCCCc-eeEEEec----------CCcEEEEEECC
Q 016134          309 --EAAYTHKED--NGVLALGGLNDPDGKP--VLICACNDNTVHLYELPSFM-ERGRIFS----------KHEVRVIEIGP  371 (394)
Q Consensus       309 --~~~~~~~~~--~~~~~~~~~~s~~g~~--~l~sgs~dg~I~iwd~~~~~-~~~~~~~----------~~~v~~l~~sp  371 (394)
                        +.+.-....  .......+.|+|-+..  .|++-..|+.|++||+.... ....+..          ...|.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence              111111111  0112234458886543  78888999999999998632 1112211          25699999999


Q ss_pred             CC-E--EEEEeCCCeEEE
Q 016134          372 DK-L--FFTGDGAGMLGV  386 (394)
Q Consensus       372 ~~-~--l~tgs~Dg~I~v  386 (394)
                      ++ .  +++.+..|.|.-
T Consensus       190 ~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TSSCEEEEECTTSCEEEE
T ss_pred             CCcEEEEEecCCCCCEEE
Confidence            88 4  444557787753

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=92.07  E-value=0.02  Score=39.37  Aligned_cols=24  Identities=46%  Similarity=0.868  Sum_probs=20.9

Q ss_pred             CceeEEEeeeCccCCC--CCcccccc
Q 016134           36 NKVVCVYVLEGRCNRN--PCRFAHTE   59 (394)
Q Consensus        36 ~~~~~~~~~~~~~~~~--~~~~~h~~   59 (394)
                      ...||++|++|.|+|-  .|+|.|..
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~   30 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPA   30 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCc
Confidence            4569999999999997  69999974

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.01  E-value=0.022  Score=41.93  Aligned_cols=25  Identities=32%  Similarity=0.852  Sum_probs=22.2

Q ss_pred             CCCceeEEEeeeCccCCCCCccccc
Q 016134           34 PTNKVVCVYVLEGRCNRNPCRFAHT   58 (394)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~h~   58 (394)
                      .....||++|..|+|.|-.|+|+|.
T Consensus        53 ~~~~~vC~~flkG~C~r~~C~y~H~   77 (98)
T 2e5s_A           53 DNTVTVCMDYIKGRCMREKCKYFHP   77 (98)
T ss_dssp             TCEEEBCHHHHHTCCCCTTCCSBCC
T ss_pred             CCccccchhhccCCCCCCCcCccCC
Confidence            3456799999999999999999995

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.95  E-value=8.5  Score=38.79  Aligned_cols=182  Identities=8%  Similarity=-0.010  Sum_probs=89.4

Q ss_pred             CCCeEEEEEcCCCc-eEEE-E-----ecccCCCeEEEEecCCCCEEEEEeCCCc--------eeecCCCcEEEecCCCCc
Q 016134          151 ECRFLHSWFCGEGL-TMLA-K-----LEGHEKAVSGIALPLRSDKLFSGSRDGT--------AWNIESSAEFSLDGPVGE  215 (394)
Q Consensus       151 ~~~~i~iWd~~~~~-~~~~-~-----l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~~~~~~~~~~~  215 (394)
                      ....+.++|..++. ..+. .     +......-..+.+..+++.++.|+.++.        ++|..+.+-..+..... 
T Consensus       410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-  488 (695)
T 2zwa_A          410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-  488 (695)
T ss_dssp             BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-
T ss_pred             CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-
Confidence            33468888887653 3332 1     1111112223333226778888876542        46666655443321110 


Q ss_pred             EEEEEEcCCEEEEEecCCCCCCEEEEEe-cCCeEEEEeCCC--eEEEEeCCCCceeEEEcC------CCCCcEEEEEc--
Q 016134          216 VYSMVVANEMLFAGAQDGHTRPVTCLAV-GRSRLCSGSMDN--TIRVWELDTLEPVMTLND------HTDAPMSLLCW--  284 (394)
Q Consensus       216 v~~l~~~~~~l~~~~~~~h~~~V~~l~~-~~~~l~sgs~Dg--~V~iwd~~~~~~~~~~~~------h~~~v~~l~~~--  284 (394)
                                        ....-.++.+ .+.+++.|+.++  .+.+||+.+.+= ..+..      ....-.++.+.  
T Consensus       489 ------------------~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          489 ------------------TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             ------------------CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEEETT
T ss_pred             ------------------CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEEeCC
Confidence                              0111122333 466777777654  789999987542 12211      11122334445  


Q ss_pred             -CCEEEEEeC--C-----CcEEEEEeCCCce-----eeEeecc-cCCcceEEEEeeECCCCCcEEEEEeC--------CC
Q 016134          285 -DQFLLSCSL--D-----HTIKVWFATGRGN-----LEAAYTH-KEDNGVLALGGLNDPDGKPVLICACN--------DN  342 (394)
Q Consensus       285 -~~~l~s~s~--D-----g~i~vwd~~~~~~-----~~~~~~~-~~~~~~~~~~~~~s~~g~~~l~sgs~--------dg  342 (394)
                       +.+++.|+.  +     ..+.+||+.+..-     ...+... ..........  ...+++ +++.|+.        ..
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~--~~~~~~-iyv~GG~~~~~~~~~~~  626 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK--YITPRK-LLIVGGTSPSGLFDRTN  626 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE--EEETTE-EEEECCBCSSCCCCTTT
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE--EeCCCE-EEEECCccCCCCCCCCC
Confidence             456666665  2     4588999987651     1222111 1111111111  112255 7777764        35


Q ss_pred             eEEEEECCCCcee
Q 016134          343 TVHLYELPSFMER  355 (394)
Q Consensus       343 ~I~iwd~~~~~~~  355 (394)
                      .|.+||+.+.+-.
T Consensus       627 ~v~~yd~~t~~W~  639 (695)
T 2zwa_A          627 SIISLDPLSETLT  639 (695)
T ss_dssp             SEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEE
Confidence            6999999887543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.73  E-value=4  Score=38.42  Aligned_cols=100  Identities=12%  Similarity=0.124  Sum_probs=65.0

Q ss_pred             CCEEEEEeCCCcEEEEEeCCCceeeEeeccc---C-CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc-------
Q 016134          285 DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK---E-DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM-------  353 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---~-~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~-------  353 (394)
                      +..++.+- ++.||.-++......+.+....   . ....+.    .+|+|. +||..+ +..|.|-.++.+.       
T Consensus        32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlv----lSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVI----SSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEE----ECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             CCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEE----ECCCCC-EEEEec-CCeEEEEEecCccccCcccc
Confidence            44554443 4778887877544444443321   1 233333    499999 776654 5689999998331       


Q ss_pred             -----eeEEEec-------CCcEEEEEECCCC----EEEEEeCCCeEEEEeCCC
Q 016134          354 -----ERGRIFS-------KHEVRVIEIGPDK----LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       354 -----~~~~~~~-------~~~v~~l~~sp~~----~l~tgs~Dg~I~vWd~~~  391 (394)
                           ....+..       ..+|..+.|+|-+    .|++-..|+.|++||+..
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                 1112221       3569999999965    899999999999999975

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=91.43  E-value=0.059  Score=38.78  Aligned_cols=25  Identities=40%  Similarity=0.820  Sum_probs=21.3

Q ss_pred             ceeEEEeeeCccCCC--CCccccccCC
Q 016134           37 KVVCVYVLEGRCNRN--PCRFAHTESS   61 (394)
Q Consensus        37 ~~~~~~~~~~~~~~~--~~~~~h~~~p   61 (394)
                      -.||+.|++|+|+|-  .|+|.|...+
T Consensus        17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A           17 LEVCRQFQRGTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             ECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred             hhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence            449999999999996  9999997443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.34  E-value=14  Score=37.52  Aligned_cols=187  Identities=13%  Similarity=0.083  Sum_probs=102.0

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-CCeEEEE
Q 016134          174 EKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSG  251 (394)
Q Consensus       174 ~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sg  251 (394)
                      ...|.+|.-..+|. |-.|..+|. .+|-..  ........                  ......|.++..+ ...|..|
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~--~~~~~~~~------------------~~~~~~i~~i~~d~~g~lWig   79 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKGLFSYDGYS--TQQHFTYG------------------ENNNTRIYCGVIIDNTYLYMG   79 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSCEEEECSSC--EEECSCTT------------------STTSSCEEEEEEETTTEEEEE
T ss_pred             cceEEEEEECCCCC-EEEEECCCccccCCCc--eEEEEccC------------------CCCCceEEEEEEcCCCcEEEE
Confidence            56799998887774 555667775 244221  11111000                  0123467777665 5677788


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecc---cCCcceEEEEeeEC
Q 016134          252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTH---KEDNGVLALGGLND  328 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~s  328 (394)
                      +.+| +..||..+.+...........|.++...+..|..++.+ -|..+|..+.+. ..+...   .....+.++  ..+
T Consensus        80 T~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i--~~d  154 (758)
T 3ott_A           80 TDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSI--IRT  154 (758)
T ss_dssp             ETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEE--EEC
T ss_pred             eCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEE--EEc
Confidence            7665 78899887543221111223466665556667777766 688888765432 222111   111223333  246


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEEEec-------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          329 PDGKPVLICACNDNTVHLYELPSFMERGRIFS-------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       329 ~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .++. +.+ ++.+ -|..|+..+.... .+..       ...|.++....++ .|..|.. +-|..++..+
T Consensus       155 ~~g~-lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~  220 (758)
T 3ott_A          155 KDNQ-IYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST  220 (758)
T ss_dssp             TTCC-EEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred             CCCC-EEE-EeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence            6777 444 4444 5778888765432 2221       1238888887765 5555654 3466676543

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=91.27  E-value=0.026  Score=40.69  Aligned_cols=23  Identities=35%  Similarity=0.976  Sum_probs=21.1

Q ss_pred             CceeEEEeeeCccCCCCCccccc
Q 016134           36 NKVVCVYVLEGRCNRNPCRFAHT   58 (394)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~h~   58 (394)
                      .-.||.+|..|+|.|-+|+|+|.
T Consensus        50 ~~~vC~dflkG~C~r~~Cky~H~   72 (89)
T 2rpp_A           50 RVIACFDSLKGRCSRENCKYLHP   72 (89)
T ss_dssp             BEEBCHHHHHTCCCCTTCCSBCC
T ss_pred             ceeeehhhhhCcCCCCCcceecC
Confidence            35699999999999999999997

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.05  E-value=11  Score=35.77  Aligned_cols=136  Identities=7%  Similarity=-0.014  Sum_probs=83.4

Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCcEEEEEcC-----CEEEEEeCC---CcEEEEEeCCC--------ceeeEeecccCC
Q 016134          254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-----QFLLSCSLD---HTIKVWFATGR--------GNLEAAYTHKED  317 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~D---g~i~vwd~~~~--------~~~~~~~~~~~~  317 (394)
                      .|.+.+|..+. +..+.+++|......+...+     .+|..+...   +++.|-++...        +....+....+.
T Consensus       178 ~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~  256 (494)
T 1bpo_A          178 VGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  256 (494)
T ss_dssp             EEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred             cceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence            46788999874 55677888876666665553     244444442   78999988543        111122222222


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      .....+....++... ++..-..-|.|++||+.++..+..-.- ...|...+-..+. -++.-...|.|.--.+++
T Consensus       257 ~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          257 QNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             TTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             ccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            233333334466655 677778899999999999988876554 5556555554443 555555788776655544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=90.99  E-value=13  Score=36.80  Aligned_cols=151  Identities=9%  Similarity=0.003  Sum_probs=84.3

Q ss_pred             CEEEEEec--CCeEE-EEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCCceeeE
Q 016134          237 PVTCLAVG--RSRLC-SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       237 ~V~~l~~~--~~~l~-sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .+.+|+|+  ++.|+ +-...+.|+.+++........+......+..++++  +. +.++-+..+.|.+.++... ....
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~  428 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKI  428 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEE
Confidence            45677776  34444 44457788888887544333333333456677776  44 5555556788999988643 2333


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEe-CCCeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEE-eCCCeEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICAC-NDNTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTG-DGAGMLG  385 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tg-s~Dg~I~  385 (394)
                      +... .-.....+  +++|....++++-. ....|...++..... ..+..  -...+.|++++++ .|+.+ +..+.|.
T Consensus       429 l~~~-~l~~P~~i--avdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~  504 (619)
T 3s94_A          429 LISE-DLEEPRAI--VLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE  504 (619)
T ss_dssp             EECT-TCCSEEEE--EEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEC-CCCCeeeE--EEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEE
Confidence            3221 11222222  24675332555542 236677777654332 23322  4568899999865 44444 4556788


Q ss_pred             EEeCCCC
Q 016134          386 VWKLLAK  392 (394)
Q Consensus       386 vWd~~~~  392 (394)
                      ..+++-.
T Consensus       505 ~~~~dG~  511 (619)
T 3s94_A          505 VMNTDGT  511 (619)
T ss_dssp             EEESSSC
T ss_pred             EEecCCC
Confidence            8877543

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=90.97  E-value=0.029  Score=39.90  Aligned_cols=23  Identities=35%  Similarity=0.976  Sum_probs=21.1

Q ss_pred             CceeEEEeeeCccCCCCCccccc
Q 016134           36 NKVVCVYVLEGRCNRNPCRFAHT   58 (394)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~h~   58 (394)
                      .-.+|.+|..|+|.|-.|+|+|.
T Consensus        42 ~~~vC~dflkG~C~r~~C~y~H~   64 (83)
T 3d2n_A           42 RVIACFDSLKGRCSRENCKYLHP   64 (83)
T ss_dssp             EEECCHHHHTTCCCCSSCSSCCC
T ss_pred             ceeehhHhhhccccCCCcceeCC
Confidence            35699999999999999999996

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.86  E-value=8.2  Score=34.17  Aligned_cols=107  Identities=10%  Similarity=0.034  Sum_probs=54.8

Q ss_pred             ecCCeEEEEeC------CCeEEEEeCCCCce--eEEEcCCCCCcEEEEEcCCEEEEEeCCC-----cEEEEEeCCCceee
Q 016134          243 VGRSRLCSGSM------DNTIRVWELDTLEP--VMTLNDHTDAPMSLLCWDQFLLSCSLDH-----TIKVWFATGRGNLE  309 (394)
Q Consensus       243 ~~~~~l~sgs~------Dg~V~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~l~s~s~Dg-----~i~vwd~~~~~~~~  309 (394)
                      +.+.+++.|+.      -..+.+||+.+.+=  +..+......-.++.+.+.+++.|+.++     .+.+||+.+.+-..
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            44555666665      24688999887542  2112211122234444577777777654     57888887653222


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCC--------------CeEEEEECCCCce
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACND--------------NTVHLYELPSFME  354 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------------g~I~iwd~~~~~~  354 (394)
                       +..........+..   .-+++ +++.|+.+              ..|.+||+.+.+-
T Consensus       227 -~~~~p~~r~~~~~~---~~~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          227 -FEAFPQERSSLSLV---SLVGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             -ECCCSSCCBSCEEE---EETTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             -CCCCCCcccceeEE---EECCE-EEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence             22111111111111   11455 67767653              2477888877643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.40  E-value=9.1  Score=33.92  Aligned_cols=107  Identities=7%  Similarity=0.019  Sum_probs=53.4

Q ss_pred             ecCCeEEEEeC------CCeEEEEeCCCCceeE--EEcCCCCCcEEEEEcCCEEEEEeCC-----CcEEEEEeCCCceee
Q 016134          243 VGRSRLCSGSM------DNTIRVWELDTLEPVM--TLNDHTDAPMSLLCWDQFLLSCSLD-----HTIKVWFATGRGNLE  309 (394)
Q Consensus       243 ~~~~~l~sgs~------Dg~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~D-----g~i~vwd~~~~~~~~  309 (394)
                      ..+.+++.|+.      -..+.+||+.+.+-..  .+........++.+.+.+++.|+.+     ..+.+||+.+.+-..
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV  236 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence            34555566653      2458999998754221  1111112223344446777777643     346788887653222


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCC--------------CeEEEEECCCCce
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACND--------------NTVHLYELPSFME  354 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------------g~I~iwd~~~~~~  354 (394)
                       +..........+..   ..+++ +++.|+.+              ..+.+||+.+.+-
T Consensus       237 -~~~~p~~r~~~~~~---~~~~~-i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          237 -MTEFPQERSSISLV---SLAGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             -CCCCSSCCBSCEEE---EETTE-EEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             -CCCCCCcccceEEE---EECCE-EEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence             11111111111111   12455 66766653              4578888887643

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=90.30  E-value=0.052  Score=39.97  Aligned_cols=24  Identities=25%  Similarity=0.805  Sum_probs=19.7

Q ss_pred             CCceeEEEeeeCccCCC-CCccccc
Q 016134           35 TNKVVCVYVLEGRCNRN-PCRFAHT   58 (394)
Q Consensus        35 ~~~~~~~~~~~~~~~~~-~~~~~h~   58 (394)
                      ....+|+||+.|.|++- .|+|.|.
T Consensus        11 ~k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCCccCcccccCcCCCCCCCCCCCC
Confidence            35678999999999985 4999987

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.28  E-value=6.5  Score=42.88  Aligned_cols=134  Identities=7%  Similarity=-0.005  Sum_probs=67.5

Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCcEEEEEcC-----CEEEEEeC---CCcEEEEEeCCC---c-----eeeEeecccCC
Q 016134          254 DNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-----QFLLSCSL---DHTIKVWFATGR---G-----NLEAAYTHKED  317 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~---Dg~i~vwd~~~~---~-----~~~~~~~~~~~  317 (394)
                      .|.+.+|..+. +..+.+++|......+...+     .++..+..   .+++.|-++...   .     ....+......
T Consensus       178 ~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~  256 (1630)
T 1xi4_A          178 VGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  256 (1630)
T ss_pred             cceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence            46788887764 34455666665554444431     12222221   267888887543   0     01111111111


Q ss_pred             cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCC-CEEEEEeCCCeEEEEeC
Q 016134          318 NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPD-KLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       318 ~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~-~~l~tgs~Dg~I~vWd~  389 (394)
                      ..-..+....++... ++..-+.-|.|++||+.++..+..-.- ...|...+-... +-++.....|.|.--.+
T Consensus       257 ~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v  329 (1630)
T 1xi4_A          257 QNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV  329 (1630)
T ss_pred             ccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence            122222223355555 666677889999999999877654333 344444443332 23333335555544433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=89.66  E-value=12  Score=33.99  Aligned_cols=201  Identities=9%  Similarity=0.098  Sum_probs=102.4

Q ss_pred             ecccCCCeEEEEecCCCCEEEEEe-CCCce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe---
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGS-RDGTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---  243 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~---  243 (394)
                      +....---.+++|++....|+.++ ..++|  ||...+....+.-. ...             ........+..|.|   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s-------------~~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GAS-------------SNGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTC-------------CSSCCSEEEEEEEESSS
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-Ccc-------------ccCCCcceeeEEEEecc
Confidence            334444556788987555555555 67886  88765544332110 000             00000112345555   


Q ss_pred             c-CC-eEEEEe-------------CCCeEEEEeCC---CCceeEEEcC--C-----------CCCcEEEEEc--CCEEEE
Q 016134          244 G-RS-RLCSGS-------------MDNTIRVWELD---TLEPVMTLND--H-----------TDAPMSLLCW--DQFLLS  290 (394)
Q Consensus       244 ~-~~-~l~sgs-------------~Dg~V~iwd~~---~~~~~~~~~~--h-----------~~~v~~l~~~--~~~l~s  290 (394)
                      + .+ ++++..             .+..|..||+.   +++.+.....  .           ......++.+  |+..++
T Consensus        74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt  153 (334)
T 2p9w_A           74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA  153 (334)
T ss_dssp             SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred             CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence            3 22 333222             26789999999   7776654431  1           1236677777  777777


Q ss_pred             EeCC-CcEEEEEeCCCceeeEeecccCC----cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce--eEEEe-c--
Q 016134          291 CSLD-HTIKVWFATGRGNLEAAYTHKED----NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME--RGRIF-S--  360 (394)
Q Consensus       291 ~s~D-g~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~--~~~~~-~--  360 (394)
                      ++.- +.|...+... +.+..+......    .....+  .++|++. +|++....+.|..+|+.....  +.... .  
T Consensus       154 ~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGI--v~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~  229 (334)
T 2p9w_A          154 FALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGI--TFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDF  229 (334)
T ss_dssp             EEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEE--EEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCC
T ss_pred             CCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceE--EEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCc
Confidence            7777 7766665432 233322211111    111122  3589998 555555599999999885432  21110 1  


Q ss_pred             --CCcEEE-EEECCCC--EEEEEeCCCeEEEEe
Q 016134          361 --KHEVRV-IEIGPDK--LFFTGDGAGMLGVWK  388 (394)
Q Consensus       361 --~~~v~~-l~~sp~~--~l~tgs~Dg~I~vWd  388 (394)
                        -..... +..-.+|  +|++....+.+.+.+
T Consensus       230 ~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S  262 (334)
T 2p9w_A          230 GTLSGTEKIVTVPVGNESVLVGARAPYAISFRS  262 (334)
T ss_dssp             CCCTTEEEEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred             ccccCcccccccccCCEEEEEEcCCCCEEEEEC
Confidence              112333 2333355  466666666555543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.28  E-value=1.7  Score=39.68  Aligned_cols=115  Identities=7%  Similarity=-0.072  Sum_probs=71.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEEcCC-CCCcEEEEEc----CCEEEEE--eCCCcEEEEEeCCCceeeEeecccC-
Q 016134          245 RSRLCSGSMDNTIRVWELDTLEPVMTLNDH-TDAPMSLLCW----DQFLLSC--SLDHTIKVWFATGRGNLEAAYTHKE-  316 (394)
Q Consensus       245 ~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h-~~~v~~l~~~----~~~l~s~--s~Dg~i~vwd~~~~~~~~~~~~~~~-  316 (394)
                      +++++.++.||.|.-+|.++|+.+-+++.. ..++....-.    +..++..  ..||.|..+|..++.....+..... 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            467899999999999999999999888753 1333332211    2234443  5899999999877643332221110 


Q ss_pred             CcceEEEEe--eE-CC----CCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          317 DNGVLALGG--LN-DP----DGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       317 ~~~~~~~~~--~~-s~----~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      ....+....  .. .+    .+. .+.+|+.++.+.-.|+.+++.+..+..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            000011000  00 00    223 678899999999999999988877764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=87.19  E-value=17  Score=36.65  Aligned_cols=143  Identities=10%  Similarity=0.063  Sum_probs=72.7

Q ss_pred             cCCeEEEEeCC------CeEEEEeCCCCc--eeEEEcCCCCCcEEEEE-cCCEEEEEeCCC--cEEEEEeCCCceeeEee
Q 016134          244 GRSRLCSGSMD------NTIRVWELDTLE--PVMTLNDHTDAPMSLLC-WDQFLLSCSLDH--TIKVWFATGRGNLEAAY  312 (394)
Q Consensus       244 ~~~~l~sgs~D------g~V~iwd~~~~~--~~~~~~~h~~~v~~l~~-~~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~  312 (394)
                      ++.+++.|+.+      ..+.+||+.+.+  .+..+......-.++.+ .+.+++.|+.++  .+.+||..+.+-.....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            44555565543      357889988743  22222211222233443 477777777654  68999987654222111


Q ss_pred             ---c--ccCCcceEEEEeeECCC-CCcEEEEEeC--C-----CeEEEEECCCCce-----eEEEe----c-CCcEEEEEE
Q 016134          313 ---T--HKEDNGVLALGGLNDPD-GKPVLICACN--D-----NTVHLYELPSFME-----RGRIF----S-KHEVRVIEI  369 (394)
Q Consensus       313 ---~--~~~~~~~~~~~~~~s~~-g~~~l~sgs~--d-----g~I~iwd~~~~~~-----~~~~~----~-~~~v~~l~~  369 (394)
                         .  .........    +..+ ++ +++.|+.  +     ..+.+||+.+...     ...+.    . .....++ .
T Consensus       531 ~g~~p~~r~~~~a~v----~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~  604 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLE----FDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-Y  604 (695)
T ss_dssp             SSGGGGSCCBSCEEE----EETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-E
T ss_pred             CCCCCCcccceeEEE----EeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-E
Confidence               0  111111122    2333 55 7777765  2     4689999988761     12221    1 1112233 3


Q ss_pred             CCCC-EEEEEeC--------CCeEEEEeCCCC
Q 016134          370 GPDK-LFFTGDG--------AGMLGVWKLLAK  392 (394)
Q Consensus       370 sp~~-~l~tgs~--------Dg~I~vWd~~~~  392 (394)
                      ..++ +++.|+.        ...|.+||+.+.
T Consensus       605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             eCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            3325 6666663        345888887653

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=86.11  E-value=0.11  Score=35.70  Aligned_cols=26  Identities=23%  Similarity=0.706  Sum_probs=22.4

Q ss_pred             CceeEEEeee-CccCCCCCccccccCC
Q 016134           36 NKVVCVYVLE-GRCNRNPCRFAHTESS   61 (394)
Q Consensus        36 ~~~~~~~~~~-~~~~~~~~~~~h~~~p   61 (394)
                      ...+|+||.. |.|.+-.|+|.|...+
T Consensus        43 ~~~~C~~f~~~G~C~~~~C~y~H~~p~   69 (72)
T 2rhk_C           43 KMSECYFYSKFGECSNKECPFLHIDPE   69 (72)
T ss_dssp             SCCBCHHHHHHSCCSBTTCCSBCCCCC
T ss_pred             cCCcccccCCCCCCCCCCeeccCCCcc
Confidence            3458999999 9999999999998654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.04  E-value=1  Score=41.20  Aligned_cols=106  Identities=8%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC-CCCcEEEEE-eCCCeEEEEECCCCceeEEEec--
Q 016134          285 DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP-DGKPVLICA-CNDNTVHLYELPSFMERGRIFS--  360 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~--  360 (394)
                      +.+++.++.||.|.-+|..+++.+-.+... .....+.....-.+ ++. +++.. ..||.|..++..++.....+..  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            457889999999999999888777666543 11122221100011 223 44443 5899999999988855544432  


Q ss_pred             ---CCcEEE---EEE------CCCCEEEEEeCCCeEEEEeCCCC
Q 016134          361 ---KHEVRV---IEI------GPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       361 ---~~~v~~---l~~------sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                         ..++..   ..+      +.++.+++|+.+|.+...|+.+.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG  131 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG  131 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC
Confidence               112221   001      13458888999998888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=84.96  E-value=14  Score=33.23  Aligned_cols=63  Identities=5%  Similarity=-0.007  Sum_probs=33.1

Q ss_pred             cCCeEEEEeC-CCeEEEEeCCCC-ceeEEEcC----CCCCcEEEEEcCCEEEEEeC-C---------CcEEEEEeCCCc
Q 016134          244 GRSRLCSGSM-DNTIRVWELDTL-EPVMTLND----HTDAPMSLLCWDQFLLSCSL-D---------HTIKVWFATGRG  306 (394)
Q Consensus       244 ~~~~l~sgs~-Dg~V~iwd~~~~-~~~~~~~~----h~~~v~~l~~~~~~l~s~s~-D---------g~i~vwd~~~~~  306 (394)
                      .+.+++.|+. ...+.+||+.+. ..-..+..    ....-..+.+.+.+++.|+. +         ..+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            4555555553 357889998641 12222221    11122333344666666665 2         468889987653

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.45  E-value=0.17  Score=35.38  Aligned_cols=26  Identities=27%  Similarity=0.714  Sum_probs=22.5

Q ss_pred             ceeEEEeee-CccCCCCCccccccCCC
Q 016134           37 KVVCVYVLE-GRCNRNPCRFAHTESSS   62 (394)
Q Consensus        37 ~~~~~~~~~-~~~~~~~~~~~h~~~p~   62 (394)
                      ..+|+||.. |.|....|+|+|...+.
T Consensus        38 ~~~C~~f~~~G~C~~~~C~f~H~~~~~   64 (77)
T 2d9n_A           38 MPECYFYSKFGECSNKECPFLHIDPES   64 (77)
T ss_dssp             SCBCHHHHHTCCCCCSSCSSBCCCTTS
T ss_pred             CCCCcccCCCCccCCCCeeccCCCccc
Confidence            358999999 99999999999987553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=84.34  E-value=21  Score=31.33  Aligned_cols=26  Identities=8%  Similarity=0.008  Sum_probs=14.6

Q ss_pred             CcEEEEEcCCEEEEEeCCCcEEEEEeC
Q 016134          277 APMSLLCWDQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       277 ~v~~l~~~~~~l~s~s~Dg~i~vwd~~  303 (394)
                      .|..++.-..+.+.-. |+.|..|-..
T Consensus       103 ~v~~ia~G~~hs~al~-~G~v~~wG~n  128 (282)
T 3qhy_B          103 GVDAIAAGAWASYALK-DGKVIAWGDD  128 (282)
T ss_dssp             SEEEEEEETTEEEEEE-TTEEEEEECC
T ss_pred             CeEEEECcCCEEEEEe-CCeEEEecCC
Confidence            4555555545444444 6666666543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=82.66  E-value=0.13  Score=44.58  Aligned_cols=27  Identities=19%  Similarity=0.568  Sum_probs=22.6

Q ss_pred             CceeEEEeeeCccCC-CCCccccccCCCc
Q 016134           36 NKVVCVYVLEGRCNR-NPCRFAHTESSSL   63 (394)
Q Consensus        36 ~~~~~~~~~~~~~~~-~~~~~~h~~~p~~   63 (394)
                      .+..|.||+.|-|.| .-|+|+|. +|.+
T Consensus        69 ~~~~C~ffakG~C~~G~~C~y~H~-lPt~   96 (240)
T 3u1l_A           69 QLFFCLFFAKGMCCLGPKCEYLHH-IPDE   96 (240)
T ss_dssp             CCSBCHHHHTTCCSCGGGCSSBBS-CCCH
T ss_pred             CCeEcCccccCCCCCCCCCCccCC-CCCc
Confidence            466999999999999 77999996 5554

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=82.33  E-value=0.42  Score=33.20  Aligned_cols=27  Identities=30%  Similarity=0.597  Sum_probs=22.6

Q ss_pred             CCceeEEEe-eeCccCC-CCCccccccCC
Q 016134           35 TNKVVCVYV-LEGRCNR-NPCRFAHTESS   61 (394)
Q Consensus        35 ~~~~~~~~~-~~~~~~~-~~~~~~h~~~p   61 (394)
                      ....+|.|| +.|.|.+ ..|+|+|.+..
T Consensus        10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e   38 (77)
T 1m9o_A           10 YKTELCRTYSESGRCRYGAKCQFAHGLGE   38 (77)
T ss_dssp             CCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             ccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence            367899999 5999997 89999998644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=82.22  E-value=27  Score=31.73  Aligned_cols=98  Identities=19%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             CCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeec----ccCCcceEEEEeeECCC---CCcEEEEEeC---C--
Q 016134          275 TDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYT----HKEDNGVLALGGLNDPD---GKPVLICACN---D--  341 (394)
Q Consensus       275 ~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~---g~~~l~sgs~---d--  341 (394)
                      -.....|++. +..|+.+..++.|+++|. +++  ..+..    .........  +.++|+   +..++++-..   +  
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~g--ia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLG--LALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEE--EEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceee--EEeCCCCCcCCEEEEEEeccCCCCC
Confidence            3456788887 445666677799998873 343  22211    111122333  346886   3425555442   3  


Q ss_pred             --CeEEEEECCCC--c-----ee-EEEec--CCcEEEEEECCCC-EEEE
Q 016134          342 --NTVHLYELPSF--M-----ER-GRIFS--KHEVRVIEIGPDK-LFFT  377 (394)
Q Consensus       342 --g~I~iwd~~~~--~-----~~-~~~~~--~~~v~~l~~sp~~-~l~t  377 (394)
                        ..|..|+....  .     .+ ..+..  .+....|+|.||| ++++
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence              56777877654  1     11 11221  3456789999999 4444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=81.87  E-value=30  Score=31.38  Aligned_cols=69  Identities=7%  Similarity=-0.043  Sum_probs=41.2

Q ss_pred             CCEEEEEec-CCeEEEEeCCCeEEEEeCCCCc-eeEEEc---CCCCCcEEEEEcC-----CEEEEEeC----C----CcE
Q 016134          236 RPVTCLAVG-RSRLCSGSMDNTIRVWELDTLE-PVMTLN---DHTDAPMSLLCWD-----QFLLSCSL----D----HTI  297 (394)
Q Consensus       236 ~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~-----~~l~s~s~----D----g~i  297 (394)
                      .....|+|. ...|+++..++.|+++|. +++ .+..+.   ........|+++.     ..|+.+..    +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            345677776 345666677799999974 444 222221   1234578899883     35555443    2    567


Q ss_pred             EEEEeCCC
Q 016134          298 KVWFATGR  305 (394)
Q Consensus       298 ~vwd~~~~  305 (394)
                      ..|+....
T Consensus       108 ~r~~~~~~  115 (354)
T 3a9g_A          108 IRGRLDGS  115 (354)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            77777543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=81.34  E-value=31  Score=31.19  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=39.1

Q ss_pred             CEEEEEec-CCeEEEEeCCCeEEEEeCCCCce--eEEEc---CCCCCcEEEEEcC-----CEEEEEeCC------CcEEE
Q 016134          237 PVTCLAVG-RSRLCSGSMDNTIRVWELDTLEP--VMTLN---DHTDAPMSLLCWD-----QFLLSCSLD------HTIKV  299 (394)
Q Consensus       237 ~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~-----~~l~s~s~D------g~i~v  299 (394)
                      .-..|+|. ...|+++..++.|++++  .++.  +..+.   ........|+++.     ..|+.+...      ..|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            45677776 23355566779999998  3332  22222   1234678899984     355554432      57888


Q ss_pred             EEeCC
Q 016134          300 WFATG  304 (394)
Q Consensus       300 wd~~~  304 (394)
                      ++...
T Consensus       110 ~~~~~  114 (352)
T 2ism_A          110 LRHLG  114 (352)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            88764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.24  E-value=4.7  Score=39.37  Aligned_cols=91  Identities=11%  Similarity=-0.008  Sum_probs=62.8

Q ss_pred             cEEEEEeCC----C-ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce-------------eEE
Q 016134          296 TIKVWFATG----R-GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME-------------RGR  357 (394)
Q Consensus       296 ~i~vwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~-------------~~~  357 (394)
                      .+.+.|.+.    . .....+...+.++.+.     .+|||++++++|-.+.++.++|++....             ..+
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~-----vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae  373 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCN-----TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE  373 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEE-----ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCccee-----eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence            478888876    2 2333344444444433     3899998888888899999999885211             222


Q ss_pred             EecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          358 IFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       358 ~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ....-.....+|.++| ...|---|.+|.-|++..
T Consensus       374 ~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          374 PELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             ccCCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            2335568889999999 555556899999999864

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.20  E-value=10  Score=38.22  Aligned_cols=70  Identities=9%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             CCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCC-------------CcEEEEEcCCEEEEEe--CCCcEEEE
Q 016134          236 RPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD-------------APMSLLCWDQFLLSCS--LDHTIKVW  300 (394)
Q Consensus       236 ~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~-------------~v~~l~~~~~~l~s~s--~Dg~i~vw  300 (394)
                      ..|.++.+...++++-+.|.++|+||+++++++.+..-...             +-.-+...+.++++=+  ..|..++|
T Consensus       222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~  301 (729)
T 3f7f_A          222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMG  301 (729)
T ss_dssp             CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEE
T ss_pred             ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEE
Confidence            45777788888999999999999999999998877643111             1111222255666544  56799999


Q ss_pred             EeCCC
Q 016134          301 FATGR  305 (394)
Q Consensus       301 d~~~~  305 (394)
                      .+...
T Consensus       302 ~l~~~  306 (729)
T 3f7f_A          302 TLLVD  306 (729)
T ss_dssp             EEEC-
T ss_pred             EEEEc
Confidence            88643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=80.05  E-value=53  Score=33.07  Aligned_cols=146  Identities=11%  Similarity=0.125  Sum_probs=81.3

Q ss_pred             CEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEc-----CCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeE
Q 016134          237 PVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN-----DHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       237 ~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~-----~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .|.++......|..++.+ -|..||..+.+.. .+.     .....|.++... ...|..+..+ -|..+|..+.+.. .
T Consensus       104 ~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~-~  179 (758)
T 3ott_A          104 DVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFE-G  179 (758)
T ss_dssp             CEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEE-E
T ss_pred             eEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceE-E
Confidence            466665555667777766 6888998765543 331     123467787776 4455556654 4777887654322 2


Q ss_pred             eecccC----CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCCEEEEEeCCCeEE
Q 016134          311 AYTHKE----DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDKLFFTGDGAGMLG  385 (394)
Q Consensus       311 ~~~~~~----~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~~l~tgs~Dg~I~  385 (394)
                      +.....    ...+.++  ..++++. .|..|.. +-|..+|..+.+..... .....|.++....++.|..|+.+ -|.
T Consensus       180 ~~~~~~~~~~~~~i~~i--~~d~~~~-~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~  254 (758)
T 3ott_A          180 IPLPVHSSQSNLFVNSL--LEDTTRQ-CVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLY  254 (758)
T ss_dssp             ECCCCCTTCSSCCEEEE--EEETTTT-EEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEE
T ss_pred             ecCCCccccccceeEEE--EEECCCC-EEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-cee
Confidence            111110    1112333  2345555 3333443 46888998776432211 11345888888888866666654 477


Q ss_pred             EEeCCC
Q 016134          386 VWKLLA  391 (394)
Q Consensus       386 vWd~~~  391 (394)
                      +++..+
T Consensus       255 ~~~~~~  260 (758)
T 3ott_A          255 VYHNDT  260 (758)
T ss_dssp             EECCTT
T ss_pred             EEecCC
Confidence            776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 24/168 (14%)

Query: 138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT 197
                    V G        W   EG        GHE  ++ I      +   +GS D T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 198 AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRS--RLCSGSMDN 255
                                 + A++ L   + D     +T ++  +S   L +G  D 
Sbjct: 250 CR-----------------LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

Query: 256 TIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW 300
              VW+    +    L  H +     L        + + S D  +K+W
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (160), Expect = 1e-12
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 249 CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD---QFLLSCSLDHTIKVWFATGR 305
            SG+ D + ++W++       T   H     ++ C+        + S D T +++     
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAI-CFFPNGNAFATGSDDATCRLFDLRAD 258

Query: 306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE-- 363
             L          G+ ++       G+ +L+   +D   ++++     +R  + + H+  
Sbjct: 259 QELMTYSHDNIICGITSVS--FSKSGR-LLLAGYDDFNCNVWDALK-ADRAGVLAGHDNR 314

Query: 364 VRVIEIGPD-KLFFTGDGAGMLGVW 387
           V  + +  D     TG     L +W
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 38/254 (14%), Positives = 68/254 (26%), Gaps = 39/254 (15%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTAWNI---ESSAEFSLDGPVGEVYSMVVANEML 226
           L GH   +  +     S  L S S+DG         ++   ++      V +   A    
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110

Query: 227 FAGAQDGHTRPVTCLAVG------RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD---- 276
           +                        SR  +G          LD  + V +  D T     
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170

Query: 277 -----------------APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNG 319
                              +SL    +  +S + D + K+W        +    H+ D  
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230

Query: 320 VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE---VRVIEIGPD-KLF 375
            +       P+G        +D T  L++L +  E       +    +  +      +L 
Sbjct: 231 AICF----FPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 376 FTGDGAGMLGVWKL 389
             G       VW  
Sbjct: 286 LAGYDDFNCNVWDA 299

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT 197
                 G+ +           +  +    +    GH + V  +        + S S D T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 198 AWNIESSAE---FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMD 254
                 + +     L      V  +  A E  ++   +               L SGS D
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY 312
            TI++W++ T   +MTL  H +    +L     +F+LSC+ D T++VW    +  ++   
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

Query: 313 THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE 348
            H+     L             ++    D TV ++E
Sbjct: 287 AHEHFVTSLDF----HKTAP-YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 45/265 (16%), Positives = 78/265 (29%), Gaps = 44/265 (16%)

Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYSMVVANEM 225
            L GH   V+ +        + S S D T   W+ E+   E +L G    V  +   +  
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 226 LFAGAQDGHTRPVTCLAVGR----------------------SRLCSGSMDNTIRVWELD 263
               +             G                         + S S D TI++WE+ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 264 TLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVL 321
           T   V T   H +    +        + SCS D T++VW    +        H+     +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 322 ALGG---------------LNDPDGKPVLICACNDNTVHLYELPSFMERGRIF-SKHEVR 365
           +                         P L+    D T+ ++++ + M    +    + VR
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251

Query: 366 VIEIGPD-KLFFTGDGAGMLGVWKL 389
            +      K   +      L VW  
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDY 276

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 33/183 (18%)

Query: 233 GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------ 284
           GH   V  +   +  + + S S D T+RVW + T E    L +H      +         
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 200

Query: 285 ----------------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND 328
                             FLLS S D TIK+W  +    L     H  DN V  +  L  
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGV--LFH 256

Query: 329 PDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGPD-KLFFTGDGAGMLG 385
             GK  ++   +D T+ +++  +     +  + HE  V  ++         TG     + 
Sbjct: 257 SGGK-FILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314

Query: 386 VWK 388
           VW+
Sbjct: 315 VWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 169 KLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFA 228
              GH+ +V  +        + SGS D +                         N     
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ-------NANNKSDSKTPNSGTCE 301

Query: 229 GAQDGHTRPVTCLAVGRS--RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD- 285
               GH   V  +A  ++   + SGS D  +  W+  +  P++ L  H ++ +S+   + 
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361

Query: 286 -------QFLLSCSLDHTIKVW 300
                      + S D   ++W
Sbjct: 362 SSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 28/170 (16%)

Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLND-------HTDAPMSLLCWD---QFLLSCSLDH 295
             + +GS+D  +RVW+ +T   V  L+        H D+  S + +    Q ++S SLD 
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRDGQSVVSGSLDR 276

Query: 296 TIKVWFATGRGNLEAAYTHKEDNGVLALGGLND--------PDGKPVLICACNDNTVHLY 347
           ++K+W      N   + T       +   G  D         + +  ++    D  V  +
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFW 335

Query: 348 ELPSFME-------RGRIFSKHEVRVIEIGPD-KLFFTGDGAGMLGVWKL 389
           +  S          R  + S        +GP+  +F TG G     +WK 
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 17/116 (14%)

Query: 150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE- 206
                          T      GH+  V  +A     + + SGS+D     W+ +S    
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWEL 262
             L G    V S+ VAN        + +               +GS D   R+W+ 
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGP--EYNV------------FATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 233 GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLS 290
            HT  V C+        L +G  + T +V+ +     V  L+D + A       +     
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 291 CSLDHTIKVWF 301
            S  +   V F
Sbjct: 119 SSDLYIRSVCF 129

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 6e-11
 Identities = 22/180 (12%), Positives = 49/180 (27%), Gaps = 25/180 (13%)

Query: 232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLND-----------HTDAPMS 280
             H   +  ++   S   S S D  ++VW+   L+     +            H    + 
Sbjct: 11  KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 281 LLCWD----QFLLSCSLDHTIKVW----------FATGRGNLEAAYTHKEDNGVLALGGL 326
            +  D      + + S    +  +              + +L  +   K     L  G  
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 327 NDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGV 386
           ND      L+      T ++++   F +     + +    +E+                V
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 17/190 (8%), Positives = 46/190 (24%), Gaps = 29/190 (15%)

Query: 170 LEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYSMVVANEML 226
            + H+  +  ++    +    S S DG    W+ +    E   D            + + 
Sbjct: 10  GKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 227 FAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTD---------- 276
              A +     +  +A       + S    +  + +   +    +               
Sbjct: 68  VLQAIERDAFELCLVA-------TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 277 -------APMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP 329
                     +       L++  +  T  +W      +   + T      +   G +  P
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 330 DGKPVLICAC 339
                   + 
Sbjct: 181 MTPSQFATSV 190

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 22/119 (18%)

Query: 234 HTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDA---PMSLLCWDQFL 288
           H+  V  L+       LCS   D  +R W++ T E + TLN H D       +L  D+  
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347

Query: 289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLY 347
            S +      V F                 G  +  G +  +    L C C D ++  +
Sbjct: 348 DSLAEPGVFDVKFL--------------KKGWRSGMGADLNES---LCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 8/92 (8%)

Query: 268 VMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVW-FATGRGNLEAAYTHKE-------DNG 319
                 H     S+   + F +SCS D  +KVW             ++          + 
Sbjct: 7   ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 320 VLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
            +      D     ++        +  Y +  
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 5e-10
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 233 GHTRPV-TCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL-LCWDQFLLS 290
           GH   V TCL    + + +G+ D  IRV++    + ++ L+ H     +L       L+S
Sbjct: 10  GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 291 CSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELP 350
            S D T++VW           +  +  N  +    + +      ++    DNT+H+++LP
Sbjct: 70  GSTDRTVRVWD---IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 351 S 351
            
Sbjct: 127 K 127

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 231 QDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFL 288
              +   +T   V  + L SGS +N   ++ L + + V          +  + +     +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLV 338

Query: 289 LSCSLDHTIKVW 300
            +   D    + 
Sbjct: 339 AAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 29/175 (16%)

Query: 168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE-FSLDGPVGEVYSMVVANE 224
             L GH  +V    L    + + +G+ D     ++  +      L G  G V+++  A+ 
Sbjct: 6   TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

Query: 225 MLFAGA-----------------------QDGHTRPVTCLAVGRSRLCSGSMDNTIRVWE 261
            +                                            + +GS DNT+ VW+
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 262 LDTLEPVMTLNDHTDAPMSLL--CWDQFLLSCSLDHTIKVWFATGRGNLEAAYTH 314
           L     V    +  D P+       + + +     H   V   +G GN+  + ++
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 5e-09
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 230 AQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLL 289
            +   ++ V CL     ++ SG  DNTI++W+ +TLE    L  HT + + L   ++ ++
Sbjct: 10  CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 290 SCSLDHTIKVWF 301
           + S D T++VW 
Sbjct: 70  TGSSDSTVRVWD 81

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC 291
           +GH R + CL      + SGS DNTIR+W+++    +  L  H +    +   ++ ++S 
Sbjct: 175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSG 234

Query: 292 SLDHTIKVWFATGRGNLEAAYTHKE-------DNGVLALGGLNDPDGKPVLICACNDNTV 344
           + D  IKVW      +  A                V  L      D    ++ + +D+T+
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL----QFDEF-QIVSSSHDDTI 289

Query: 345 HLYE 348
            +++
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 234 HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSL 293
           H   V  +      + S S D TI+VW   T E V TLN H      L   D+ ++S S 
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS 196

Query: 294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM 353
           D+TI++W       L     H+E                  ++    D  + +++L + +
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVR-------CIRFDNKRIVSGAYDGKIKVWDLVAAL 249

Query: 354 ERG--------RIFSKHEVRVIEIGPD-KLFFTGDGAGMLGVW 387
           +          R   +H  RV  +  D     +      + +W
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 28/191 (14%)

Query: 138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT 197
             +  +      D    +        +T+   L GH  AV+ +    +     SG R   
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161

Query: 198 AWNIESSAE-FSLDGPVGEVYSMVVANEMLFAGAQDGHTR------------------PV 238
            WN  +     +L+G    +  +   + ++ +G+ D   R                   V
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 221

Query: 239 TCLAVGRSRLCSGSMDNTIRVWELDT---------LEPVMTLNDHTDAPMSLLCWDQFLL 289
            C+     R+ SG+ D  I+VW+L              + TL +H+     L   +  ++
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIV 281

Query: 290 SCSLDHTIKVW 300
           S S D TI +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 49/253 (19%), Positives = 86/253 (33%), Gaps = 34/253 (13%)

Query: 163 GLTMLAKLEGHEKAVSGI-ALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYS 218
           G   L ++    +   G+  L     K+ SG RD T   W+  +   +  L G  G V  
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 219 MVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSM-------------------DNTIRV 259
           +   +E +        T  V  +  G                            D +I V
Sbjct: 61  LQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 260 WELDTLEPV---MTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE 316
           W++ +   +     L  H  A   +   D++++S S D TIKVW  +    +     HK 
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179

Query: 317 DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFF 376
               L            +++   +DNT+ L+++        +    E+       +K   
Sbjct: 180 GIACLQYRD-------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232

Query: 377 TGDGAGMLGVWKL 389
           +G   G + VW L
Sbjct: 233 SGAYDGKIKVWDL 245

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 29/247 (11%)

Query: 164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIES-SAEFSLDGPVGEVYS-- 218
           L     L+GH+  V    L    +++ SGS D T   W+  +     +L G  G V+S  
Sbjct: 6   LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

Query: 219 ----------------MVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWEL 262
                           +  A          GHT  V C+ +   R+ SGS D T+RVW++
Sbjct: 65  MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 263 DTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLA 322
           +T + +  L  H  A   +    + ++S + D  +KVW       L     H      L 
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184

Query: 323 LGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAG 382
             G++       ++    D ++ ++++ +      +     +       D +  +G+   
Sbjct: 185 FDGIH-------VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 237

Query: 383 MLGVWKL 389
            + +W +
Sbjct: 238 TVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 10/151 (6%)

Query: 232 DGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSC 291
            GHT  V  L      + SGS+D +IRVW+++T   + TL  H      +   D  L+S 
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 233

Query: 292 SLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPS 351
           + D T+K+W       L+      +               K  +I + +D TV L++L +
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSA----VTCLQFNKNFVITSSDDGTVKLWDLKT 289

Query: 352 FMERGRIFSKHE------VRVIEIGPDKLFF 376
                 + +         V  I     KL  
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 8e-08
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
           GH   V C+     R+ SG+ D  ++VW+ +T   + TL  HT+   SL      ++S S
Sbjct: 135 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS 194

Query: 293 LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352
           LD +I+VW       +     H+     + L          +L+    D+TV ++++ + 
Sbjct: 195 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-------NILVSGNADSTVKIWDIKTG 247

Query: 353 MERGRIFSKHEVRVIEIGPD---KLFFTGDGAGMLGVWKL 389
                +   ++ +              T    G + +W L
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 260 WELDTLEPVMTLNDHTDAPMSLLCWD-QFLLSCSLDHTIKVW 300
           W    L+    L  H D  ++ L +    ++S S D+T+KVW
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 42

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 37/200 (18%)

Query: 136 NVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD 195
            V C    G  V      F+   +  E  T L  L+GH       +L      + SGS D
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLD 196

Query: 196 GTA--WNIESSAE-FSLDGPVGEVYSMVVANEMLFAGAQDG------------------- 233
            +   W++E+     +L G       M + + +L +G  D                    
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 234 --HTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL----NDHTDAPMSLLCWD-- 285
             H   VTCL   ++ + + S D T+++W+L T E +  L    +  +   +  +     
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316

Query: 286 -QFLLSCSLDHT----IKVW 300
                  S + T    + V 
Sbjct: 317 KLVCAVGSRNGTEETKLLVL 336

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 8e-09
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVW 300
           +++ S S D TI++W + TL+   T+   T      L      Q L+S S +  I   
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 234 HTRPVTCLAV--GRSRLCSGSMDNTIRVWELDT--LEPVMTLNDHTDAPMSLLCW---DQ 286
              P++C A    R+++     ++ + ++E        V  L +H       + W     
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTG-VDWAPDSN 64

Query: 287 FLLSCSLDHTIKVW 300
            +++C  D    VW
Sbjct: 65  RIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 231 QDGHTRPVTCLAV------GRSRLCSGSMDNTIRVWELDTLEPVM 269
              H   V+ ++V        S+ C+  MD  + +W++ +LE  +
Sbjct: 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 365

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 4e-08
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 233 GHTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQF--L 288
           GH + +T L+       L S   +  I  W++ T        D     ++ +       L
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 289 LSCSLDHTIKVWFATGRG 306
            + S D  +KV  A G G
Sbjct: 70  FTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 1e-07
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 249 CSGSMDNTIRVWELDT--LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300
            +GS+DN++ VW ++     P++    H  + ++ + W  +  ++S   D  IK W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.004
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 23/124 (18%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDGPVGEVYSMVVA 222
           ++     GH KA++ ++       LFS   +G    W+I +     +             
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF------------ 50

Query: 223 NEMLFAGAQDGHTRPVTCLAVGRSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
                    D H   +T +       L + S D+ ++V          +           
Sbjct: 51  --------PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 102

Query: 282 LCWD 285
           L   
Sbjct: 103 LGLA 106

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 9e-08
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 234 HTRPVTCLAVGRS--RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW---DQFL 288
           H   V  L          S   DN +  W       +      + + +S       D+++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLS-CDISVDDKYI 321

Query: 289 LSCSLDHTIKVW 300
           ++ S D    V+
Sbjct: 322 VTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 15/129 (11%), Positives = 26/129 (20%), Gaps = 26/129 (20%)

Query: 138 CCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT 197
              +              +            +L  HE  V  +          S  +D  
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 198 A--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR--SRLCSGSM 253
              W     A                         Q   +  V    +      + +GS 
Sbjct: 289 LNAWRTPYGASI----------------------FQSKESSSVLSCDISVDDKYIVTGSG 326

Query: 254 DNTIRVWEL 262
           D    V+E+
Sbjct: 327 DKKATVYEV 335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCS 292
           GH + +T L V  + L SGS D  I  W   +        DH++  +SL        S  
Sbjct: 11  GHNKGITALTV--NPLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSSI 63

Query: 293 LDHTIKVWF 301
                    
Sbjct: 64  SWDDTLKVN 72

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 249 CSGSMDNTIRVWELDT-LEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVW 300
            +GS+D  I ++ +   ++ +  LN H D   + L W     L+S   D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN-LLWETPSTLVSSGADACIKRW 284

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 9e-07
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-----DQFLLSCSLDHTIKVW 300
            +  +   D TIRVW++ T + V           +         +  ++S SLD T+  +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 283 CWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN 342
              Q   +   D TI+VW  T    ++     K+  G   +G +   +G+  +I    D 
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR--IISLSLDG 318

Query: 343 TVHLYEL 349
           T++ YEL
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 20/140 (14%)

Query: 126 KSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLR 185
           K  S    ++           V  D          GE L  +   +   +        L 
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262

Query: 186 SDKLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA 242
           S K  +   D T   W++ +S           ++ +  V                   +A
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG-----------------VVA 305

Query: 243 VGRSRLCSGSMDNTIRVWEL 262
            G  R+ S S+D T+  +EL
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 8/138 (5%)

Query: 150 DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF 207
              +             L  +E   +A           +  +  R        ++   E+
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273

Query: 208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV---GRSRL-CSGSMDNTIRVWELD 263
                   V  +        A  + GH   +  + V    +  L    + D T+ + + +
Sbjct: 274 RHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

Query: 264 TLEPVMTLNDHTDAPMSL 281
           + E + ++N     P  +
Sbjct: 332 SGEELRSVNQLGHGPQVI 349

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 25/177 (14%)

Query: 191 SGSRDGTAWNIE-SSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLC 249
             +     + I+  +         G + + VVA         DG            SR+ 
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVA--------DDGSFIAHAS--TVFSRIA 72

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHTD---------APMSLLCWDQFLLSCSL-DHTIKV 299
            G   + + V++  TL P   +                 SL    + LL           
Sbjct: 73  RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG 132

Query: 300 WFATGRGNLEAAYTHKEDNGVLALGGLN----DPDGKPVLICACNDNTVHLYELPSF 352
                    +      +   +             DG    +    + T  +     F
Sbjct: 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF 189

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 233 GHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-QFLL 289
               PV  +        L +   D  I  W L T + +       +  +  +      L 
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC 308

Query: 290 SCSLDHTIKVWFATGR 305
             + D T K   A  +
Sbjct: 309 LATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 231 QDGHTRPVTCLAV--GRSRLCSGSMDNTIRVWELDTLEPVMTL---NDHTDAPMSLLCW 284
           +      ++ + +   +S L   S D ++ V++ D     + L     +    +    +
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC-CNF 64

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 12/126 (9%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 250 SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-QFLLSCSLDHTIKVW-FATGRGN 307
           +      I + + D+ + V  ++      +S +    ++LL    D  I +         
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 96

Query: 308 LEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHE-VRV 366
             A      +   +        + +  +  A       + +  +   +  + ++   V  
Sbjct: 97  KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 156

Query: 367 IEIGPD 372
               P+
Sbjct: 157 QTYHPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 20/146 (13%)

Query: 136 NVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRD 195
                  +           L +     G   + ++   +      A+     + F     
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261

Query: 196 GTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDN 255
             ++++E +A           YS+ V+         DG            S +  G    
Sbjct: 262 LESFDLEKNASIKRVPLPHSYYSVNVS--------TDG------------STVWLGGALG 301

Query: 256 TIRVWELDTLEPVMTLNDHTDAPMSL 281
            +  ++ +TLE    ++   +A MSL
Sbjct: 302 DLAAYDAETLEKKGQVDLPGNASMSL 327

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 14/187 (7%), Positives = 34/187 (18%), Gaps = 25/187 (13%)

Query: 207 FSLDGPVGEVYSMV---VANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELD 263
           +      G           +  +      G        +   +R   G   + + V++  
Sbjct: 49  WVSCAGCGVTLGHSLGAFLSLAVAGH--SGSD--FALASTSFARSAKGKRTDYVEVFDPV 104

Query: 264 TLEPVMTLNDHTDAPMSL--------LCWD--QFLLSCSLDHTIKVWFATGRGNLEAAYT 313
           T  P+  +        S+         C      L             +    + +    
Sbjct: 105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL-SVPGASDDQLTK 163

Query: 314 HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK 373
                 +        P             ++   +L +      I               
Sbjct: 164 SASCFHIH-------PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216

Query: 374 LFFTGDG 380
                 G
Sbjct: 217 AQANYPG 223

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 14/141 (9%), Positives = 38/141 (26%), Gaps = 3/141 (2%)

Query: 235 TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-QFLLSCSL 293
           T+ +    +      +      I + +  T E    L+      +S L    ++L     
Sbjct: 22  TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR 81

Query: 294 DHTIKVW-FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSF 352
           D  + +           A      +   +    +   + K  +  A       + +  + 
Sbjct: 82  DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141

Query: 353 MERGRIFSKHE-VRVIEIGPD 372
             +    ++       E  P+
Sbjct: 142 EPKKIQSTRGMTYDEQEYHPE 162

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 16/158 (10%), Positives = 38/158 (24%), Gaps = 22/158 (13%)

Query: 165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANE 224
           +    +     + +   L  RS    +G  D       SS      G    +  +     
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL----- 272

Query: 225 MLFAGAQDGHTRPVTCLAVGRSR--LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLL 282
                  +      +    G              +  +++ T + V  + ++       L
Sbjct: 273 -------ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-VTEVKNNLTD----L 320

Query: 283 CW---DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKED 317
                 + ++    D  I  +      +     T K  
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 20/191 (10%), Positives = 36/191 (18%), Gaps = 36/191 (18%)

Query: 86  WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGN 145
           ++S  S D  P             K         S           T+            
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN---- 250

Query: 146 CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIES 203
                  R            M+  LE      S       +         G    +++++
Sbjct: 251 ---DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGR--SRLCSGSMDNTIRVWE 261
                                             +T L +      +     D  I  + 
Sbjct: 308 -------------------------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342

Query: 262 LDTLEPVMTLN 272
           L+  E   T+ 
Sbjct: 343 LEKPEDERTVE 353

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 234 HTRPVTCLAVGR--SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSL 281
                 C+A  +   +L  G   N + V+  DTLE V  +       MS 
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI-KLPGGDMST 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.39
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.9
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.77
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.68
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.51
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.94
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.78
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.75
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.5
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.42
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.34
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.85
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.99
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.91
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.7
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.6
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.57
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.65
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.1
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.45
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.85
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.64
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.32
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.71
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.54
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	87.43
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	87.06
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.02
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	85.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	84.88
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.35

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=267.54  Aligned_cols=267  Identities=19%  Similarity=0.245  Sum_probs=222.3

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..|++|+ |+.|+|||++++......       ......+|...|.+++ |+|++.++++++.+|    .|++||+..
T Consensus        62 ~g~~latg~-dg~V~iWd~~~~~~~~~~-------~~~~~~~h~~~I~~v~-~s~dg~~l~s~~~dg----~i~iwd~~~  128 (337)
T d1gxra_          62 PTRHVYTGG-KGCVKVWDISHPGNKSPV-------SQLDCLNRDNYIRSCK-LLPDGCTLIVGGEAS----TLSIWDLAA  128 (337)
T ss_dssp             SSSEEEEEC-BSEEEEEETTSTTCCSCS-------EEEECSCTTSBEEEEE-ECTTSSEEEEEESSS----EEEEEECCC
T ss_pred             CCCEEEEEE-CCEEEEEEccCCccccee-------EEeeecCCCCcEEEEE-EcCCCCEEEEeeccc----ccccccccc
Confidence            777899987 789999999876543211       1123457888999999 999999998777666    999999864


Q ss_pred             C-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEE
Q 016134          163 G-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVT  239 (394)
Q Consensus       163 ~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~  239 (394)
                      . .+....+..|...|.+++|+|++.+|++++.|+.  +|++.+++....                     ...|...|.
T Consensus       129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~---------------------~~~~~~~v~  187 (337)
T d1gxra_         129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ---------------------FQGHTDGAS  187 (337)
T ss_dssp             C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---------------------ECCCSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc---------------------ccccccccc
Confidence            3 3677888999999999999999999999999998  599988876532                     126777888


Q ss_pred             EEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          240 CLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       240 ~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      +++|+  +..+++++.|+.|++||+++++.+..+. |...|.+++|+  +++|++++.|+.|++||++..+... ...|.
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~  265 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHE  265 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCS
T ss_pred             cccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-ccccc
Confidence            88886  6789999999999999999999888775 88999999998  7899999999999999998776543 33343


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      ..  +.  .+.|+|+++ +|++++.|+.|++||+.+++.+..+.+...|++++|+|++ +|++|+.|+.|+|||+-
T Consensus       266 ~~--i~--~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         266 SC--VL--SLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SC--EE--EEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             cc--cc--eEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            33  33  334799998 8999999999999999999999888888899999999999 99999999999999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-33  Score=259.76  Aligned_cols=259  Identities=15%  Similarity=0.215  Sum_probs=216.0

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ..+||...|.+++ |+|++.++++++.||    +|+|||+.++ +.+..+..|...|.+++|+|++++|++++.|+.  +
T Consensus        50 tL~GH~~~I~~l~-~s~~~~~l~sgs~Dg----~v~iWd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          50 TLRGHLAKIYAMH-WGTDSRLLVSASQDG----KLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             EECCCSSCEEEEE-ECTTSSEEEEEETTT----EEEEEETTTT-EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             EECCCCCCEEEEE-ECCCCCEEEEEECCC----ceeeeecccc-eeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            4779999999999 999999999887766    9999999987 888999999999999999999999999999999  4


Q ss_pred             eecCCCcE-----EEecCCCCcEEEEEEcCC-EEEEEecC------------------CCCCCEEEEEec--CCeEEEEe
Q 016134          199 WNIESSAE-----FSLDGPVGEVYSMVVANE-MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGS  252 (394)
Q Consensus       199 Wd~~~~~~-----~~~~~~~~~v~~l~~~~~-~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs  252 (394)
                      |+......     ..+.++...........+ .+.....+                  .+...+....+.  ..++++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            77654332     244555555555544443 33333332                  566677777775  67899999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC
Q 016134          253 MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       253 ~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .|+.|++||+++++++.++.+|...|++++|+  +++|++++.|+.|++||++....+..+........+..+  .|+|+
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s~~  281 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV--SFSKS  281 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE--EECSS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE--EECCC
Confidence            99999999999999999999999999999998  789999999999999999988777666544444444443  47999


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          331 GKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       331 g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      +. +|++|+.|+.|+|||+.+++.+..+.. ...|++++|+|++ +|++|+.||.|+|||
T Consensus       282 ~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         282 GR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CC-EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            98 999999999999999999999988875 7789999999999 999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-33  Score=254.17  Aligned_cols=256  Identities=22%  Similarity=0.310  Sum_probs=225.1

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      .+||...|++++ |+|++.++++++.||    +|+|||+.++ +++.++.+|...|.+++|+|++.+++++..++.  +|
T Consensus        13 L~GH~~~I~~l~-~sp~~~~l~s~s~Dg----~i~iWd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          13 LSGHRSPVTRVI-FHPVFSVMVSASEDA----TIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             EECCSSCEEEEE-ECSSSSEEEEEESSS----CEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             EcCCCCCeEEEE-EcCCCCEEEEEeCCC----eEEEEECCCC-CEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            679999999999 999999998776655    9999999887 788999999999999999999999999999998  58


Q ss_pred             ecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCe
Q 016134          200 NIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNT  256 (394)
Q Consensus       200 d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~  256 (394)
                      +....+.. .+..+...+..+.+.++  .++++..+                  +|...+.+++|+  +.+|++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence            87776665 56678889999999887  67777665                  688899999997  688999999999


Q ss_pred             EEEEeCCCCceeEEEcCCCCCcEEEEEc----------------------CCEEEEEeCCCcEEEEEeCCCceeeEeecc
Q 016134          257 IRVWELDTLEPVMTLNDHTDAPMSLLCW----------------------DQFLLSCSLDHTIKVWFATGRGNLEAAYTH  314 (394)
Q Consensus       257 V~iwd~~~~~~~~~~~~h~~~v~~l~~~----------------------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  314 (394)
                      |++|++.+++.+..+..|...+.++.+.                      +.++++++.|+.|++||+++++.+..+..|
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            9999999999999999999999998874                      357999999999999999999988888777


Q ss_pred             cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEEe
Q 016134          315 KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVWK  388 (394)
Q Consensus       315 ~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd  388 (394)
                      ......+    .++|+++ +|++++.|+.|+|||+++++.+..+.. ...|++++|+|++ +|++|+.||+|+|||
T Consensus       247 ~~~v~~~----~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGV----LFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEE----EECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEE----EECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            6543333    3589998 899999999999999999998888865 7789999999999 999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-33  Score=261.06  Aligned_cols=265  Identities=14%  Similarity=0.124  Sum_probs=214.2

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..++.+ .++.+.+|+++++....            ...+|...|++++ ++|++.+++++..+|    .|+|||+.+
T Consensus        28 ~g~~l~~~-~~~~v~i~~~~~~~~~~------------~~~~H~~~v~~~~-~sp~g~~latg~~dg----~i~iwd~~~   89 (311)
T d1nr0a1          28 AGDKIQYC-NGTSVYTVPVGSLTDTE------------IYTEHSHQTTVAK-TSPSGYYCASGDVHG----NVRIWDTTQ   89 (311)
T ss_dssp             TSSEEEEE-ETTEEEEEETTCSSCCE------------EECCCSSCEEEEE-ECTTSSEEEEEETTS----EEEEEESSS
T ss_pred             CCCEEEEE-eCCEEEEEECCCCceeE------------EEcCCCCCEEEEE-EeCCCCeEeccccCc----eEeeeeeec
Confidence            66667765 46679999999776432            3568888999999 999999999777776    999999976


Q ss_pred             Cc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCC
Q 016134          163 GL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRP  237 (394)
Q Consensus       163 ~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~  237 (394)
                      +. .....+.+|..+|.+++|+|++++|++++.+..    ||++++++...                     ...+|...
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---------------------~l~~h~~~  148 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---------------------NLTGQARA  148 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---------------------CCCCCSSC
T ss_pred             cccccccccccccCccccccccccccccccccccccccccccccccccccc---------------------cccccccc
Confidence            63 345678899999999999999999999987643    79998876542                     12267778


Q ss_pred             EEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEee
Q 016134          238 VTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAY  312 (394)
Q Consensus       238 V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  312 (394)
                      |.+++|+  ++ .|++|+.|+.|++||++++++...+..|...|.++.++  +++|++++.|+.|++||++++.....+.
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccc
Confidence            8888886  34 58899999999999999999999999999999999998  7899999999999999999887766554


Q ss_pred             cccC-----CcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecC----CcEEEEEECCCCEEEEEeCCCe
Q 016134          313 THKE-----DNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSK----HEVRVIEIGPDKLFFTGDGAGM  383 (394)
Q Consensus       313 ~~~~-----~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----~~v~~l~~sp~~~l~tgs~Dg~  383 (394)
                      ....     ...+.  ++.|+|+++ +|++|+.|++|+|||+++++++..+...    ..+.++.|+++ .|++++.||.
T Consensus       229 ~~~~~~~~h~~~V~--~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~  304 (311)
T d1nr0a1         229 DDSLKNVAHSGSVF--GLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGF  304 (311)
T ss_dssp             CTTSSSCSSSSCEE--EEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS-CEEEEETTCC
T ss_pred             cccccccccccccc--ccccCCCCC-EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC-EEEEEECCCE
Confidence            3211     12233  345799998 8999999999999999999988887652    23556666544 7889999999


Q ss_pred             EEEEeCC
Q 016134          384 LGVWKLL  390 (394)
Q Consensus       384 I~vWd~~  390 (394)
                      |++||.+
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-32  Score=257.81  Aligned_cols=285  Identities=21%  Similarity=0.313  Sum_probs=216.6

Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEE
Q 016134           88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTML  167 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~  167 (394)
                      ..+..+....+||...+.....        ...-..+|...|++++ |+|++.+|++++ +    +.|+|||+.++ +.+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~H~~~V~~l~-fs~dg~~lasg~-d----~~i~iW~~~~~-~~~   96 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDV--------ELHKSLDHTSVVCCVK-FSNDGEYLATGC-N----KTTQVYRVSDG-SLV   96 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEE--------EEEEEEECSSCCCEEE-ECTTSSEEEEEC-B----SCEEEEETTTC-CEE
T ss_pred             cccCCCCcEEEeCCCCCcceee--------eeEeeCCCCCcEEEEE-ECCCCCEEEEEe-C----CeEEEEEeccc-ceE
Confidence            3455677778898775543210        0011236888999999 999999998754 4    48999999877 445


Q ss_pred             EEec------------------ccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--
Q 016134          168 AKLE------------------GHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--  224 (394)
Q Consensus       168 ~~l~------------------~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--  224 (394)
                      ..+.                  +|...|++|+|+|++++|++|+.|+.  +||...++.+ ...+|...|.++.+.++  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD  176 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccc
Confidence            4443                  46777999999999999999999999  6999998877 56778999999999987  


Q ss_pred             EEEEEecC-----------------CCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEE-------cCCCCC
Q 016134          225 MLFAGAQD-----------------GHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTL-------NDHTDA  277 (394)
Q Consensus       225 ~l~~~~~~-----------------~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~-------~~h~~~  277 (394)
                      .+++++.+                 .+.....++.+.   +++|++++.|+.|++||+++++.+..+       .+|...
T Consensus       177 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~  256 (388)
T d1erja_         177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS  256 (388)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             cccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC
Confidence            67766655                 233444555553   678999999999999999998877665       358889


Q ss_pred             cEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecc----------cCCcceEEEEeeECCCCCcEEEEEeCCCeEE
Q 016134          278 PMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTH----------KEDNGVLALGGLNDPDGKPVLICACNDNTVH  345 (394)
Q Consensus       278 v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~  345 (394)
                      |.++.|+  +++|++++.|+.|++||+++..........          .....+.  ++.|+|+++ +|++|+.||.|+
T Consensus       257 v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~-~l~sg~~dg~i~  333 (388)
T d1erja_         257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL--SVATTQNDE-YILSGSKDRGVL  333 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE--EEEECGGGC-EEEEEETTSEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEE--EEEECCCCC-EEEEEeCCCEEE
Confidence            9999998  789999999999999999865433222111          1112222  345799998 999999999999


Q ss_pred             EEECCCCceeEEEec-CCcEEEEEE------CCCC-EEEEEeCCCeEEEEeCC
Q 016134          346 LYELPSFMERGRIFS-KHEVRVIEI------GPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       346 iwd~~~~~~~~~~~~-~~~v~~l~~------sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      +||+++++++..+.. ...|+++++      +|++ +|++|+.||+|+||+++
T Consensus       334 vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999888875 678999875      5688 99999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-32  Score=247.01  Aligned_cols=258  Identities=25%  Similarity=0.342  Sum_probs=202.3

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ..+||...|.+ . +++++.+|++++.||    +|+|||+.++ ++++++.+|...|.+++|+++  +|++++.|+.  +
T Consensus        11 ~l~GH~~~V~s-~-~~~~g~~l~sgs~Dg----~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~   81 (342)
T d2ovrb2          11 VLKGHDDHVIT-C-LQFCGNRIVSGSDDN----TLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV   81 (342)
T ss_dssp             EEECSTTSCEE-E-EEEETTEEEEEETTS----CEEEEETTTC-CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred             EECCcCCceEE-E-EEECCCEEEEEeCCC----eEEEEECCCC-CEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence            46799888754 3 667899998776665    9999999887 889999999999999999874  9999999998  4


Q ss_pred             eecCCCcEEE-ecCCCCcEEEEEEc----------------------------------------CCEEEEEecC-----
Q 016134          199 WNIESSAEFS-LDGPVGEVYSMVVA----------------------------------------NEMLFAGAQD-----  232 (394)
Q Consensus       199 Wd~~~~~~~~-~~~~~~~v~~l~~~----------------------------------------~~~l~~~~~~-----  232 (394)
                      |+........ .......+......                                        ...++.++.+     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  161 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  161 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             cccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEE
Confidence            7766554431 11111122211111                                        1123333332     


Q ss_pred             -------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEE
Q 016134          233 -------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKV  299 (394)
Q Consensus       233 -------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~v  299 (394)
                                   +|...+..+.+++.+|++++.|+.|++||++.++++..+..|...+.++.+++++|++++.|+.|++
T Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         162 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI  241 (342)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             eecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEE
Confidence                         6788888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCceeeEeecccCCc-ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec------CCcEEEEEECCC
Q 016134          300 WFATGRGNLEAAYTHKEDN-GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS------KHEVRVIEIGPD  372 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~~~v~~l~~sp~  372 (394)
                      ||+...+....+..+.... ...++  .+  ++. ++++++.||+|+|||+++++.+..+..      ...|++++|+|+
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCL--QF--NKN-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEE--EE--CSS-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             Eecccccccccccccceeeeceeec--cc--CCC-eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            9999888777776554332 23333  33  445 899999999999999999998887753      346999999999


Q ss_pred             C-EEEEEeCCCe----EEEEeCCCC
Q 016134          373 K-LFFTGDGAGM----LGVWKLLAK  392 (394)
Q Consensus       373 ~-~l~tgs~Dg~----I~vWd~~~~  392 (394)
                      + +|++|+.||+    |++||++.+
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            9 9999999985    999999764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-32  Score=255.68  Aligned_cols=278  Identities=11%  Similarity=0.051  Sum_probs=213.5

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR  153 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~  153 (394)
                      +-.+|++  ++..+++++.|++|+|||++++.+....          ...||...|.++. |+|++.++++++.++    
T Consensus        11 t~~~~s~--dg~~la~~~~~~~i~iw~~~~~~~~~~~----------~l~gH~~~V~~l~-fsp~~~~l~s~s~D~----   73 (371)
T d1k8kc_          11 SCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVH----------ELKEHNGQVTGVD-WAPDSNRIVTCGTDR----   73 (371)
T ss_dssp             CEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEE----------EEECCSSCEEEEE-EETTTTEEEEEETTS----
T ss_pred             EEEEECC--CCCEEEEEeCCCEEEEEECCCCCEEEEE----------EecCCCCCEEEEE-ECCCCCEEEEEECCC----
Confidence            4557777  8889999999999999999877643222          4568999999999 999999998776554    


Q ss_pred             eEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      +|+|||+.++ .+....+.+|...|++++|+|++++|++++.|++  +|+++.......                 ....
T Consensus        74 ~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~-----------------~~~~  136 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-----------------CKHI  136 (371)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-----------------EEEE
T ss_pred             eEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc-----------------cccc
Confidence            9999999765 3456677889999999999999999999999998  688766543211                 1112


Q ss_pred             cCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCC------------------CceeEEEcCCCCCcEEEEEc--CCEE
Q 016134          231 QDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDT------------------LEPVMTLNDHTDAPMSLLCW--DQFL  288 (394)
Q Consensus       231 ~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~--~~~l  288 (394)
                      ...|...|.+++|+  +.+|++|+.|++|++||+..                  ++.+.....|...|.+++|+  +++|
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  216 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  216 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence            33688889999997  67899999999999999864                  23566677899999999998  7899


Q ss_pred             EEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE----------
Q 016134          289 LSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI----------  358 (394)
Q Consensus       289 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~----------  358 (394)
                      ++++.|+.|++||+..+..+..+..+..+...    +.|+|+++ +|++|. |+.+++|..........+          
T Consensus       217 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s----~~fs~d~~-~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (371)
T d1k8kc_         217 AWVSHDSTVCLADADKKMAVATLASETLPLLA----VTFITESS-LVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS  290 (371)
T ss_dssp             EEEETTTEEEEEEGGGTTEEEEEECSSCCEEE----EEEEETTE-EEEEET-TSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred             cccccCCcceEEeeecccceeeeeccccccee----eeecCCCC-EEEEEc-CCceEEEEeeCCCceEEEeeeecCcccc
Confidence            99999999999999998888888776654332    34688987 777654 777777654322110000          


Q ss_pred             --------------------------------ecCCcEEEEEECCCC-----EEEEEeCCCeEEEEeCCC
Q 016134          359 --------------------------------FSKHEVRVIEIGPDK-----LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       359 --------------------------------~~~~~v~~l~~sp~~-----~l~tgs~Dg~I~vWd~~~  391 (394)
                                                      .|...|+++++.+.+     .|+|++.||.|+|||+++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                            023468999987743     689999999999999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.8e-31  Score=238.57  Aligned_cols=260  Identities=14%  Similarity=0.168  Sum_probs=199.0

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEe-cccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDGT--  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~--  197 (394)
                      ...||...|++++ ++|++.++++++.||    +|++||+.++ +.++.+ .+|...|++++|+|++++ ++++.|+.  
T Consensus         7 ~~~GH~~~V~~l~-~s~dg~~l~s~s~Dg----~v~vWd~~~~-~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~   79 (299)
T d1nr0a2           7 VRYGHNKAITALS-SSADGKTLFSADAEG----HINSWDISTG-ISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLK   79 (299)
T ss_dssp             EECCCSSCEEEEE-ECTTSSEEEEEETTS----CEEEEETTTC-CEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEE
T ss_pred             EcCCCCCCcEEEE-ECCCCCEEEEEcCCC----eEEEEECCCC-cEEEEEcCCCCCcEEEEEeecccee-ecccceeeEE
Confidence            5679999999999 999999998776665    9999999887 555666 579999999999999875 45566776  


Q ss_pred             eeecCCCcEE----EecCCCCcEEEEEEcCC--EEEEEecC-------------CCCCCEEEEEec--CCeEEEEeCCCe
Q 016134          198 AWNIESSAEF----SLDGPVGEVYSMVVANE--MLFAGAQD-------------GHTRPVTCLAVG--RSRLCSGSMDNT  256 (394)
Q Consensus       198 vWd~~~~~~~----~~~~~~~~v~~l~~~~~--~l~~~~~~-------------~h~~~V~~l~~~--~~~l~sgs~Dg~  256 (394)
                      +|+.......    ....+...+..++++++  .++++..+             .....+.+++|+  +++|++|+.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6887654322    23346677889999887  44444333             234567788886  678999999999


Q ss_pred             EEEEeCCCCceeE-EEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccC-CcceEEEEeeECCCCC
Q 016134          257 IRVWELDTLEPVM-TLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKE-DNGVLALGGLNDPDGK  332 (394)
Q Consensus       257 V~iwd~~~~~~~~-~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~  332 (394)
                      |++||+++++... ....|...|++++|+  +++|++++.|+.|++||+.++........... ...+.+  +.|+|+++
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~--l~~s~~~~  237 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC--VSWSPDNV  237 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE--EEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence            9999998876543 344689999999998  78999999999999999987665544333221 122333  34799998


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          333 PVLICACNDNTVHLYELPSFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       333 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                       +|++|+.|+.|+|||++++.....+..    ...|.++.|.++.+|++++.|+.|++||+.
T Consensus       238 -~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         238 -RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             -ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence             999999999999999998765443332    345788877665599999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-30  Score=239.25  Aligned_cols=276  Identities=10%  Similarity=0.070  Sum_probs=207.7

Q ss_pred             CCCcccccccccccccCCCCC-cccccccCCCCCCCCCCCCCCccccccCCCCc-cceeeeccccc--cccccCCCeecC
Q 016134           74 SPPSYNRLKNNLWVSSGSEDR-IPHVRNRENPGYTGPKNSSSASSTVSDESGDK-STSKKTTLKNV--CCHWLLGNCVRG  149 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~-~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~-~~v~~~~~~~~--~~~~~~~~~~~g  149 (394)
                      ...+|.+  .+..++.++++. .++.|+..........          ...||. ..|++++ |+|  ++.++++++.+|
T Consensus        21 t~l~~~~--~~~~la~~~~~~~~i~~~~~~~~~~~~~~----------~~~gh~~~~v~~v~-fsP~~~g~~lasgs~Dg   87 (325)
T d1pgua1          21 THLSYDP--TTNAIAYPCGKSAFVRCLDDGDSKVPPVV----------QFTGHGSSVVTTVK-FSPIKGSQYLCSGDESG   87 (325)
T ss_dssp             CCCEEET--TTTEEEEEETTEEEEEECCSSCCSSCSEE----------EECTTTTSCEEEEE-ECSSTTCCEEEEEETTS
T ss_pred             EEEEECC--CCCEEEEEeCCCEEEEEEeCCCCCccceE----------EEeCCCCCCEEEEE-EeeCCCCCEEEEEeCCC
Confidence            3455665  666777766644 4677776544432211          345664 5799999 987  567888766666


Q ss_pred             CCCCeEEEEEcCCC-------ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEE
Q 016134          150 DECRFLHSWFCGEG-------LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYS  218 (394)
Q Consensus       150 ~~~~~i~iWd~~~~-------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~  218 (394)
                          +|+|||+..+       ......+..|.++|.+++|++++++|++++.+..    +|++++++.+..         
T Consensus        88 ----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------  154 (325)
T d1pgua1          88 ----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE---------  154 (325)
T ss_dssp             ----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE---------
T ss_pred             ----CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee---------
Confidence                9999998533       1223456779999999999999999998876543    799988876531         


Q ss_pred             EEEcCCEEEEEecCCCCCCEEEEEec--C-CeEEEEeCCCeEEEEeCCCCceeEEEc---CCCCCcEEEEEc---CCEEE
Q 016134          219 MVVANEMLFAGAQDGHTRPVTCLAVG--R-SRLCSGSMDNTIRVWELDTLEPVMTLN---DHTDAPMSLLCW---DQFLL  289 (394)
Q Consensus       219 l~~~~~~l~~~~~~~h~~~V~~l~~~--~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~---~h~~~v~~l~~~---~~~l~  289 (394)
                                  ..+|...|.+++|+  + .++++++.|+.|++||+++.+....+.   .|...|.+++|+   +.+|+
T Consensus       155 ------------~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         155 ------------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             ------------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             ------------eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence                        22677788888886  2 358889999999999999887766653   567789999997   57999


Q ss_pred             EEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCc----E
Q 016134          290 SCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHE----V  364 (394)
Q Consensus       290 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~----v  364 (394)
                      +++.|+.|++||+++++.+..+..|........+...+ |+++ +|++++.|+.|+|||+++++.+..+.. .+.    .
T Consensus       223 s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~  300 (325)
T d1pgua1         223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ  300 (325)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred             ccccccceeeeeeccccccccccccccccccceeeeec-cCCC-EEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeE
Confidence            99999999999999999988888777666555554443 6777 899999999999999999988887754 222    3


Q ss_pred             EEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          365 RVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       365 ~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                      .++.+.++++|++++.||.|++||+
T Consensus       301 ~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         301 VGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEECCCCEEEEEECCCEEEEEEC
Confidence            4555566669999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-30  Score=236.62  Aligned_cols=238  Identities=14%  Similarity=0.156  Sum_probs=196.9

Q ss_pred             CCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc----eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134          124 GDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL----TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--  197 (394)
Q Consensus       124 g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~----~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--  197 (394)
                      +|...|.+++ ++|++.+|++++ +    +.|+|||+.+..    .......+|.+.|.+++|+|++++|++++.|+.  
T Consensus        49 ~H~~~V~~v~-fs~~g~~latg~-d----g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          49 NHGEVVCAVT-ISNPTRHVYTGG-K----GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             CCSSCCCEEE-ECSSSSEEEEEC-B----SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             CCCCcEEEEE-ECCCCCEEEEEE-C----CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            6777899999 999999999754 3    489999986431    233445689999999999999999999999999  


Q ss_pred             eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 016134          198 AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       198 vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      +||+.........                   ....|...|.++.|+  +.++++++.|+.|++||++++++......|.
T Consensus       123 iwd~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  183 (337)
T d1gxra_         123 IWDLAAPTPRIKA-------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             EEECCCC--EEEE-------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ccccccccccccc-------------------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6998765432110                   112677788888886  5789999999999999999999999999999


Q ss_pred             CCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          276 DAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       276 ~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      ..|.+++|+  +.++++++.|+.|++||+++++.+..+. +.  ..+.+  +.|+|+++ +|++++.|+.|++||+++.+
T Consensus       184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~--~~i~~--l~~~~~~~-~l~~~~~d~~i~i~d~~~~~  257 (337)
T d1gxra_         184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FT--SQIFS--LGYCPTGE-WLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS--SCEEE--EEECTTSS-EEEEEETTSCEEEEETTSSC
T ss_pred             cccccccccccccccccccccccccccccccceeecccc-cc--cceEE--EEEccccc-ccceeccccccccccccccc
Confidence            999999998  7899999999999999999887665543 33  23333  34699998 89999999999999999998


Q ss_pred             eeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          354 ERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       354 ~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ......+...|++++|+|++ +|++++.|+.|++||+.+.
T Consensus       258 ~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            87777778889999999999 9999999999999998765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=4.3e-30  Score=236.56  Aligned_cols=232  Identities=15%  Similarity=0.094  Sum_probs=189.6

Q ss_pred             eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF  207 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~  207 (394)
                      ..++ .+|.+..++.+ . +   ..|.+||+.+. +..+.+.+|.+.|++++|+|++++|++|+.|++  |||+.++...
T Consensus        21 ~~~a-~~~~g~~l~~~-~-~---~~v~i~~~~~~-~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          21 VVLG-NTPAGDKIQYC-N-G---TSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCCE-ECTTSSEEEEE-E-T---TEEEEEETTCS-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             EEEE-EcCCCCEEEEE-e-C---CEEEEEECCCC-ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            3445 78888887653 2 2   27999999876 677888999999999999999999999999998  6999887643


Q ss_pred             EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC--CCeEEEEeCCCCceeEEEcCCCCCcEEEEE
Q 016134          208 SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM--DNTIRVWELDTLEPVMTLNDHTDAPMSLLC  283 (394)
Q Consensus       208 ~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~--Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~  283 (394)
                      ...                   ....|...|.+++|+  +++|++++.  +..++||++++++++.++.+|...|.+++|
T Consensus        94 ~~~-------------------~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          94 LKT-------------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             EEE-------------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             ccc-------------------ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            100                   112677788888887  567888875  566999999999999999999999999999


Q ss_pred             c--CC-EEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          284 W--DQ-FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       284 ~--~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      +  ++ +|++++.|+.|++||+++.+....+..|......+    .++|+++ +|++++.|+.|++||+.++.....+..
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v----~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~  229 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV----RYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFED  229 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE----EECTTSS-EEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred             cccceeeeccccccccccccccccccccccccccccccccc----ccCcccc-ccccccccccccccccccccccccccc
Confidence            8  44 68899999999999999888777776665543333    3699998 899999999999999999887766542


Q ss_pred             --------CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          361 --------KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       361 --------~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                              ...|++++|+|++ +|++|+.|+.|+|||+++.
T Consensus       230 ~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence                    4579999999999 9999999999999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.3e-30  Score=236.85  Aligned_cols=282  Identities=22%  Similarity=0.292  Sum_probs=211.8

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..++|||.|++|+|||++++.+..            ...||...|.+++ +++.. ++++++.    |+.|++|+...
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~------------~l~~H~~~V~~l~-~s~~~-~l~s~s~----D~~i~iw~~~~   83 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLL------------QLSGHDGGVWALK-YAHGG-ILVSGST----DRTVRVWDIKK   83 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEE------------EEECCSSCEEEEE-EETTT-EEEEEET----TCCEEEEETTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEE------------EEECCCCCEEEEE-EcCCC-EEEEEec----ccccccccccc
Confidence            56689999999999999999877542            3568888999999 88854 5555544    55999999987


Q ss_pred             CceEEEEeccc--CCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEE------------------------ecCCCC
Q 016134          163 GLTMLAKLEGH--EKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFS------------------------LDGPVG  214 (394)
Q Consensus       163 ~~~~~~~l~~h--~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~------------------------~~~~~~  214 (394)
                      . +.......+  ...+..+.+.+++.++++++.|+.  +||+.+.....                        ...+..
T Consensus        84 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          84 G-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             T-EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             c-ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            7 444444433  344555677889999999999998  69988755321                        112334


Q ss_pred             cEEEEEEcCCEEEEEecC------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 016134          215 EVYSMVVANEMLFAGAQD------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDH  274 (394)
Q Consensus       215 ~v~~l~~~~~~l~~~~~~------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h  274 (394)
                      .+.........++.+..+                  ++...+.++.++  +.++++++.|++|++||+++++++..+++|
T Consensus       163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccc
Confidence            455555555566666554                  567778888886  688999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          275 TDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       275 ~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      ...|.++.+++++|++++.|+.|++||+++....  +..+......+..   +++++. +|++|+ |+.|+|||++++++
T Consensus       243 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~---~~~~~~-~l~~g~-d~~i~vwd~~tg~~  315 (355)
T d1nexb2         243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITT---FYVSDN-ILVSGS-ENQFNIYNLRSGKL  315 (355)
T ss_dssp             SSCCCEEEECSSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCE---EEECSS-EEEEEE-TTEEEEEETTTCCB
T ss_pred             cccccccccccceeeeeeccccccccccccccee--cccccCCceEEEE---EcCCCC-EEEEEe-CCEEEEEECCCCCE
Confidence            9999999999999999999999999999876543  3334433333222   466776 776665 89999999999987


Q ss_pred             eEEEe--cCCcEEEEEECCCCEEEEEeCCCeEEEEeCC
Q 016134          355 RGRIF--SKHEVRVIEIGPDKLFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       355 ~~~~~--~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~  390 (394)
                      +....  +...|++++|+|+.++++++.||+++||.++
T Consensus       316 ~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         316 VHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             CCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             EEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence            75432  3567999999998788899999997776543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=237.98  Aligned_cols=267  Identities=18%  Similarity=0.290  Sum_probs=208.0

Q ss_pred             CCCcccccccccccccCCCCCcccccccCCCCCCC----CCCC--CCCccccccCCCCccceeeeccccccccccCCCee
Q 016134           74 SPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTG----PKNS--SSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV  147 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~----~~~s--~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~  147 (394)
                      +..+|++  ++..+++|+ |++|+|||+.++....    +...  ...........++...|.+++ |+|++.++++++.
T Consensus        66 ~~l~fs~--dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~-~s~~~~~l~s~~~  141 (388)
T d1erja_          66 CCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC-FSPDGKFLATGAE  141 (388)
T ss_dssp             CEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE-ECTTSSEEEEEET
T ss_pred             EEEEECC--CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEE-ECCCCCcceeccc
Confidence            4456666  888899986 8899999999876421    1100  000111123346778899999 9999999988776


Q ss_pred             cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-
Q 016134          148 RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-  224 (394)
Q Consensus       148 ~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-  224 (394)
                      +|    .|++||...+ +.+..+.+|...|.+++|++++..+++++.++.  +||.++........+......+.+.+. 
T Consensus       142 dg----~v~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  216 (388)
T d1erja_         142 DR----LIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  216 (388)
T ss_dssp             TS----CEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             cc----cccccccccc-ccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence            66    9999999887 788889999999999999999999999999998  699999888766555666666666553 


Q ss_pred             --EEEEEecC-------------------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCc---------
Q 016134          225 --MLFAGAQD-------------------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLE---------  266 (394)
Q Consensus       225 --~l~~~~~~-------------------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~---------  266 (394)
                        .+++++.+                         +|...|.+++|+  +++|++++.|+.|++||+++.+         
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence              77777765                         578899999997  6799999999999999997543         


Q ss_pred             ---eeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEE--eeECCCCCcEEEEEe
Q 016134          267 ---PVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALG--GLNDPDGKPVLICAC  339 (394)
Q Consensus       267 ---~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~g~~~l~sgs  339 (394)
                         +......|...|.+++|+  +++|++++.|+.|++||+++++.+..+..|...+..+.+.  ..|+|++. +|++|+
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s  375 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGS  375 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEE
T ss_pred             ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEe
Confidence               344556788999999998  7899999999999999999999999998887655544432  24688988 999999


Q ss_pred             CCCeEEEEECC
Q 016134          340 NDNTVHLYELP  350 (394)
Q Consensus       340 ~dg~I~iwd~~  350 (394)
                      .|++|+||+++
T Consensus       376 ~Dg~I~iW~~~  386 (388)
T d1erja_         376 GDCKARIWKYK  386 (388)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            99999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9e-29  Score=221.65  Aligned_cols=249  Identities=20%  Similarity=0.266  Sum_probs=196.1

Q ss_pred             CCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--ee
Q 016134          122 ESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AW  199 (394)
Q Consensus       122 ~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vW  199 (394)
                      ..++.+.|.++.   +++.+|++++.||    +|+|||+.++ ++++++.+|++.|++|+|  ++++|++|+.|+.  +|
T Consensus        11 ~~~~~~~V~c~~---~d~~~l~sgs~Dg----~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2          11 RSETSKGVYCLQ---YDDQKIVSGLRDN----TIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCSSCCCEEEEE---CCSSEEEEEESSS----CEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             cCCCCCCEEEEE---EcCCEEEEEeCCC----eEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            345566777665   4688888777666    9999999887 889999999999999987  5789999999999  69


Q ss_pred             ecCCCcEEEecC-CCCcEEEEEEcCCEEEEEecC---------------------CCCCCEEEEEecCCeEEEEeCCCeE
Q 016134          200 NIESSAEFSLDG-PVGEVYSMVVANEMLFAGAQD---------------------GHTRPVTCLAVGRSRLCSGSMDNTI  257 (394)
Q Consensus       200 d~~~~~~~~~~~-~~~~v~~l~~~~~~l~~~~~~---------------------~h~~~V~~l~~~~~~l~sgs~Dg~V  257 (394)
                      ++..+....... ..............++++..+                     .|...|..+.+....+++++.|+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i  160 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  160 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             ccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCce
Confidence            999888764332 222333333233344444333                     6788898888889999999999999


Q ss_pred             EEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEE
Q 016134          258 RVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLIC  337 (394)
Q Consensus       258 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~s  337 (394)
                      ++||+++++++..+.++...+..+.+.+.+|++++.|++|++||+++...+.....+...  +..    +.+++. +|++
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~----~~~~~~-~l~s  233 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL--VRC----IRFDNK-RIVS  233 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEE----EECCSS-EEEE
T ss_pred             eeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeeccccee--eee----ccccce-EEEE
Confidence            999999999999999999999999999999999999999999999998887776655432  222    256666 8999


Q ss_pred             EeCCCeEEEEECCCC---------ceeEEEe-cCCcEEEEEECCCCEEEEEeCCCeEEEEe
Q 016134          338 ACNDNTVHLYELPSF---------MERGRIF-SKHEVRVIEIGPDKLFFTGDGAGMLGVWK  388 (394)
Q Consensus       338 gs~dg~I~iwd~~~~---------~~~~~~~-~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd  388 (394)
                      ++.|+.|++||+...         ..+..+. |...|++++|++. +|++++.||+|+|||
T Consensus       234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS-CEEECCSSSEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC-EEEEEecCCEEEEeC
Confidence            999999999997532         2344443 3667999999543 899999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.2e-29  Score=223.87  Aligned_cols=227  Identities=21%  Similarity=0.331  Sum_probs=191.7

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC-------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD-------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~-------  232 (394)
                      ....+|+||+++|++|+|+|++++|+||+.|++  |||+++++.+ .+..|...|.+++++++  .++.+..+       
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            345689999999999999999999999999999  6999998876 67889999999999998  56555544       


Q ss_pred             -----------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134          233 -----------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTI  297 (394)
Q Consensus       233 -----------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i  297 (394)
                                 .|...+.++.+.  ++.+++++.|+.+++||+++++.+..+..|...+.+++++  +.+|++++.|+.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence                       678899999997  6789999999999999999999999999999999999998  7899999999999


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEE----------------eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALG----------------GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-  360 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~----------------~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-  360 (394)
                      ++|++.+.+....+..+......+.+.                ......+. ++++++.|+.|++||+++++.+..+.. 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            999999888877776655433322221                00122334 789999999999999999998888765 


Q ss_pred             CCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ...|.+++|+|++ +|++++.||.|++||+.+.
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             CCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            6789999999999 9999999999999999764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.7e-28  Score=223.71  Aligned_cols=256  Identities=19%  Similarity=0.289  Sum_probs=199.7

Q ss_pred             cCCCCccce-eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--
Q 016134          121 DESGDKSTS-KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--  197 (394)
Q Consensus       121 ~~~g~~~~v-~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--  197 (394)
                      .++||...| +++   ++++.++++++.||    +|+|||+.++ +++.++++|++.|++|+|+|+ .+|++|+.|+.  
T Consensus         7 tL~GH~~~vitc~---~~~~~~l~tgs~Dg----~i~vWd~~~~-~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~   77 (355)
T d1nexb2           7 TLRGHMTSVITCL---QFEDNYVITGADDK----MIRVYDSINK-KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVR   77 (355)
T ss_dssp             EEECCSSSCEEEE---EEETTEEEEEETTT----EEEEEETTTT-EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEE
T ss_pred             EECCcCCCcEEEE---EECCCEEEEEeCCC----eEEEEECCCC-cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccc
Confidence            467888765 444   45678888777665    9999999887 889999999999999999985 58999999999  


Q ss_pred             eeecCCCcEEEecC---CCCcEEEEEEcCC--EEEEEecC----------------------------------------
Q 016134          198 AWNIESSAEFSLDG---PVGEVYSMVVANE--MLFAGAQD----------------------------------------  232 (394)
Q Consensus       198 vWd~~~~~~~~~~~---~~~~v~~l~~~~~--~l~~~~~~----------------------------------------  232 (394)
                      +|++...+......   .........+.++  .+++++.+                                        
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            69999888763322   2223344455555  55655554                                        


Q ss_pred             -CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceee
Q 016134          233 -GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLE  309 (394)
Q Consensus       233 -~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~  309 (394)
                       .|...+.....++++++++..|+.|++||+++++.+..+.++...+.++.++  +.++++++.|+.|++||++++..+.
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence             3455666666778999999999999999999999999999999999999988  7899999999999999999999888


Q ss_pred             EeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          310 AAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                      .+..|...+..+.+    +  ++ +|++++.|+.|++||+++.................+++++.+++++.|+.|+|||+
T Consensus       238 ~~~~h~~~v~~~~~----~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~  310 (355)
T d1nexb2         238 TLQGHTALVGLLRL----S--DK-FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL  310 (355)
T ss_dssp             EECCCSSCCCEEEE----C--SS-EEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEET
T ss_pred             cccccccccccccc----c--cc-eeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEEC
Confidence            88887766554433    4  34 89999999999999999887665554433333345667774445556999999999


Q ss_pred             CCC
Q 016134          390 LAK  392 (394)
Q Consensus       390 ~~~  392 (394)
                      ++.
T Consensus       311 ~tg  313 (355)
T d1nexb2         311 RSG  313 (355)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=9.1e-29  Score=232.84  Aligned_cols=235  Identities=12%  Similarity=0.084  Sum_probs=185.1

Q ss_pred             ceeeeccccccccccCCCeecCCCCCeEEEEEcCCC-ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCC
Q 016134          128 TSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEG-LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESS  204 (394)
Q Consensus       128 ~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~  204 (394)
                      .|++++ |+|++.++++++.++    .|+|||..++ ...+..+++|.++|++|+|+|++++|++++.|++  |||++++
T Consensus         9 pIt~~~-~s~dg~~la~~~~~~----~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           9 PISCHA-WNKDRTQIAICPNNH----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CCCEEE-ECTTSSEEEEECSSS----EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CeEEEE-ECCCCCEEEEEeCCC----EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            588998 999999998766554    9999999755 3578889999999999999999999999999998  6999877


Q ss_pred             cEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCc
Q 016134          205 AEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEP----VMTLNDHTDAP  278 (394)
Q Consensus       205 ~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~~~v  278 (394)
                      ......                   ...+|...|.+++|+  ++.|++++.|++|++|++.....    ......|...|
T Consensus        84 ~~~~~~-------------------~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          84 TWKPTL-------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEEEE-------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             cccccc-------------------ccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc
Confidence            644211                   122677788888886  67899999999999999876543    33446788999


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEeCCCce------------------eeEeecccCCcceEEEEeeECCCCCcEEEEE
Q 016134          279 MSLLCW--DQFLLSCSLDHTIKVWFATGRGN------------------LEAAYTHKEDNGVLALGGLNDPDGKPVLICA  338 (394)
Q Consensus       279 ~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg  338 (394)
                      .+++|+  +.+|++++.|++|++||+.....                  +.....+.  ..+.  .++|+|+++ +|+++
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~--~~~~s~~g~-~l~s~  219 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GWVH--GVCFSANGS-RVAWV  219 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS--SCEE--EEEECSSSS-EEEEE
T ss_pred             ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc--CcEE--EEEeecccc-ccccc
Confidence            999998  78999999999999999865321                  11111111  2223  345799998 89999


Q ss_pred             eCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          339 CNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       339 s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      +.|+.|++||+.++..+..+.. ..+|.+++|+|++.+++++.|+.+++|.++.
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             ccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            9999999999999988887776 6679999999999444556688887876544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=4.2e-26  Score=209.19  Aligned_cols=224  Identities=21%  Similarity=0.300  Sum_probs=189.3

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecC------
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQD------  232 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~------  232 (394)
                      .+..++|+||++.|++|+|+|++++|+||+.||+  |||+.+++.+ .+..|...|.+++|+|+  .+++++.+      
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            4678899999999999999999999999999999  6999999887 56788999999999987  77777766      


Q ss_pred             ----------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC
Q 016134          233 ----------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL  293 (394)
Q Consensus       233 ----------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~  293 (394)
                                      +|.......... ...++....|.....++............+...+....+.  +.++++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence                            345555544444 6678888899999999988877777777788888888777  789999999


Q ss_pred             CCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEEC
Q 016134          294 DHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIG  370 (394)
Q Consensus       294 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~s  370 (394)
                      |+.|++||+++++.+..+..|...+..+    +|+|++. +|++++.|+.|++||++.......+..   ...|.+++|+
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v----~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAI----CFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEE----EECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEE----EECCCCC-EEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            9999999999998888887766544333    3699998 899999999999999999888777644   5569999999


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCC
Q 016134          371 PDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       371 p~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |++ +|++|+.||.|++||+.+.
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~  302 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCCCEEEEEECCCEEEEEECCCC
Confidence            999 9999999999999998764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.4e-26  Score=208.56  Aligned_cols=219  Identities=17%  Similarity=0.242  Sum_probs=171.5

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEe--cCCCCcEEEEEEcCC-EEEEEecC-------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSL--DGPVGEVYSMVVANE-MLFAGAQD-------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~--~~~~~~v~~l~~~~~-~l~~~~~~-------  232 (394)
                      ++.++++||+++|++|+|+|++++|+||+.|++  +||+++++....  ..|...|.+++|+++ .+++++.+       
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEec
Confidence            678999999999999999999999999999999  699999988754  357889999999998 55555554       


Q ss_pred             --------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCC
Q 016134          233 --------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDH  295 (394)
Q Consensus       233 --------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg  295 (394)
                                    .+...+.+++++ ...+++++.++.+++|+..  +......  ...+.+++++  +++|++++.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEVPI--SYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEEEC--SSCEEEEEECTTSCEEEEEETTS
T ss_pred             cCCccccccccccccccccccccccccccccccccccccccccccc--ccccccc--ccccccccccccccccccccccc
Confidence                          356778889987 3334445557799999954  3333333  3456778887  78999999999


Q ss_pred             cEEEEEeCCCceeeE-eecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe----cCCcEEEEEEC
Q 016134          296 TIKVWFATGRGNLEA-AYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF----SKHEVRVIEIG  370 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~s  370 (394)
                      .|++||+++.+.... ...|..  .+.++  .|+|+++ +|++++.|+.|++||+.++.......    +...|++++|+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~--~i~~~--~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPA--EITSV--AFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSS--CEEEE--EECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccc--ccccc--ccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            999999987665432 223333  33333  4699998 89999999999999998876554332    25679999999


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCC
Q 016134          371 PDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       371 p~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |++ +|++|+.|+.|++||+.+.
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCT
T ss_pred             ccccceEEEcCCCEEEEEECCCC
Confidence            999 9999999999999998764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.4e-26  Score=207.91  Aligned_cols=220  Identities=24%  Similarity=0.433  Sum_probs=179.0

Q ss_pred             ceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCC-------
Q 016134          164 LTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDG-------  233 (394)
Q Consensus       164 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~-------  233 (394)
                      .++.++|+||++.|.+ +++++|++|+||+.|++  |||+++++.+ .+.+|...|.+++|+++.+++++.|+       
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccccccccc
Confidence            3678899999999865 46668999999999998  6999999887 67889999999999999999998770       


Q ss_pred             -----------CC----------------------------------------CCEEEEEecCCeEEEEeCCCeEEEEeC
Q 016134          234 -----------HT----------------------------------------RPVTCLAVGRSRLCSGSMDNTIRVWEL  262 (394)
Q Consensus       234 -----------h~----------------------------------------~~V~~l~~~~~~l~sgs~Dg~V~iwd~  262 (394)
                                 +.                                        ............+++++.|+.|++||+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence                       11                                        111111122457888999999999999


Q ss_pred             CCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCC
Q 016134          263 DTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDN  342 (394)
Q Consensus       263 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg  342 (394)
                      +..+++..+.+|...+..+.+.+.+|++++.|+.|++||++..+.+..+..+....  .++    +++++ +|++++.|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v--~~~----~~~~~-~l~s~s~d~  237 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGM----ELKDN-ILVSGNADS  237 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--EEE----EEETT-EEEEEETTS
T ss_pred             ccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccce--eEE----ecCCC-EEEEEcCCC
Confidence            99999999999999999999889999999999999999999988888777665433  333    23445 899999999


Q ss_pred             eEEEEECCCCceeEEEec----CCcEEEEEECCCCEEEEEeCCCeEEEEeCCCC
Q 016134          343 TVHLYELPSFMERGRIFS----KHEVRVIEIGPDKLFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       343 ~I~iwd~~~~~~~~~~~~----~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .|++||+...+....+..    ...+.++.++++ ++++++.||.|++||+++.
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTC
T ss_pred             EEEEEecccccccccccccceeeeceeecccCCC-eeEEEcCCCEEEEEECCCC
Confidence            999999999888777754    345777777654 9999999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.5e-27  Score=216.68  Aligned_cols=245  Identities=16%  Similarity=0.122  Sum_probs=186.0

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .+|++..++..+++|+.|++|+|||+..+......+.    ........+...|..+. |++.+.+++...  .+.+..+
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~----~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~--~~~~~~~  141 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV----NVKSEFQVLAGPISDIS-WDFEGRRLCVVG--EGRDNFG  141 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE----EEEEEEECCSSCEEEEE-ECTTSSEEEEEE--CCSSCSE
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec----ccccccccccCcEEEEE-ECCCCCccceee--ccccceE
Confidence            3444322456888999999999999987654321100    00011234556788898 999999887554  3445688


Q ss_pred             EEEEcCCCceEEEEecccCCCeEEEEecCCCCE-EEEEeCCCc--eeecCCCcEEE-ecCCCCcEEEEEEcCCEEEEEec
Q 016134          156 HSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDK-LFSGSRDGT--AWNIESSAEFS-LDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~--vWd~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      ++|+..++ +.+..+.+|...|++++|+|++++ +++++.|+.  +||+...+... ...                   .
T Consensus       142 ~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~-------------------~  201 (325)
T d1pgua1         142 VFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-------------------H  201 (325)
T ss_dssp             EEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-------------------S
T ss_pred             EEEeeccc-ccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc-------------------c
Confidence            99999877 788999999999999999998875 778999998  69988776542 221                   1


Q ss_pred             CCCCCCEEEEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEE----EEEc-CCEEEEEeCCCcEEEEEeC
Q 016134          232 DGHTRPVTCLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMS----LLCW-DQFLLSCSLDHTIKVWFAT  303 (394)
Q Consensus       232 ~~h~~~V~~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~----l~~~-~~~l~s~s~Dg~i~vwd~~  303 (394)
                      ..|...|.+++|+   +.+|++++.|+.|++||+++++++.++.+|...+..    +.+. +++|++++.|+.|+|||++
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            2677888999986   468999999999999999999999999988877644    4444 7899999999999999999


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEEC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYEL  349 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~  349 (394)
                      +++.+..+..+........+.+.+.+++  +|++++.|++|+|||+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         282 TSKCVQKWTLDKQQLGNQQVGVVATGNG--RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTEEEEEEECCTTCGGGCEEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             CCCEEEEEEecCCcccCeEEEEEECCCC--EEEEEECCCEEEEEEC
Confidence            9998888877766555554444444433  6889999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.1e-25  Score=203.08  Aligned_cols=242  Identities=14%  Similarity=0.166  Sum_probs=176.2

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--e
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--A  198 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--v  198 (394)
                      ...||...|++++ ++|    |++    |+.|++|++||+.++      ..+|...|.+++++++ ..+++++.|++  +
T Consensus         8 ~l~gH~~~I~~l~-~s~----l~s----gs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~   71 (287)
T d1pgua2           8 TISGHNKGITALT-VNP----LIS----GSYDGRIMEWSSSSM------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKV   71 (287)
T ss_dssp             EECCCSSCEEEEE-TTT----TEE----EETTSCEEETTTTEE------ECCCCSCEEEEECCST-TCCEEEETTTEEEE
T ss_pred             EECCCCCceEEEE-ECc----EEE----EeCCCeEEEEECCCC------CCCCCCCEEEEEecCC-CeEEEEeecccccc
Confidence            4679999999999 876    554    455559999998653      3689999999999865 56899999998  5


Q ss_pred             eecCCCcEEEecCCCCcEEEEEEcCC--EEEEEecC----------------CCCCCEEEEEecCCeEEEEeCCC-eEEE
Q 016134          199 WNIESSAEFSLDGPVGEVYSMVVANE--MLFAGAQD----------------GHTRPVTCLAVGRSRLCSGSMDN-TIRV  259 (394)
Q Consensus       199 Wd~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~~----------------~h~~~V~~l~~~~~~l~sgs~Dg-~V~i  259 (394)
                      |++...+      ....+..+.+.++  .++++..+                .+...+.++..+++.+++++.|+ .|++
T Consensus        72 w~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~  145 (287)
T d1pgua2          72 NGITKHE------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV  145 (287)
T ss_dssp             TTEEEEE------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred             ccccccc------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeee
Confidence            8865432      1223344444444  22221111                23445666677778888777765 7999


Q ss_pred             EeCCCCceeEEEc-CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeE-eecccCCcceEEEEeeECC------
Q 016134          260 WELDTLEPVMTLN-DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEA-AYTHKEDNGVLALGGLNDP------  329 (394)
Q Consensus       260 wd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~s~------  329 (394)
                      |++...+....+. .|...+++++|+  +.+|++++.|+.|++||+.+++.... +..|....  .++  .|+|      
T Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v--~~~--~~~p~~~~~~  221 (287)
T d1pgua2         146 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI--NAI--SWKPAEKGAN  221 (287)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE--EEE--EECCCC----
T ss_pred             eeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc--cee--eecccccccc
Confidence            9998766666554 477889999998  78999999999999999988765543 23344333  322  2344      


Q ss_pred             ----CCCcEEEEEeCCCeEEEEECCCCceeEEEe--cCCcEEEEEECCCCEEEEEeCCCeEEEEeC
Q 016134          330 ----DGKPVLICACNDNTVHLYELPSFMERGRIF--SKHEVRVIEIGPDKLFFTGDGAGMLGVWKL  389 (394)
Q Consensus       330 ----~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~  389 (394)
                          ++. +|++|+.|++|+|||+++........  +...|++++|+|++.|++++.|+.|++|++
T Consensus       222 ~~~~~~~-~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         222 EEEIEED-LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             --CCSCC-EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             cccCCCC-eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                445 89999999999999998755444443  366899999999999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.7e-25  Score=206.96  Aligned_cols=285  Identities=14%  Similarity=0.106  Sum_probs=187.1

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCcc------ceeeeccccccccccCCCeecCCCCCeEEE
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKS------TSKKTTLKNVCCHWLLGNCVRGDECRFLHS  157 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~------~v~~~~~~~~~~~~~~~~~~~g~~~~~i~i  157 (394)
                      +.+++|+|+|+++||||..+.....+...   .   .....++.      ....+........++++++.+    +.|++
T Consensus        24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----g~v~~   93 (393)
T d1sq9a_          24 NSFTVSCSGDGYLKVWDNKLLDNENPKDK---S---YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS----GDLLF   93 (393)
T ss_dssp             SSEEEEEETTSEEEEEESBCCTTCCGGGG---E---EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT----SCEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCCCCcccce---e---EeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC----CcEEE
Confidence            45789999999999999876653221100   0   00011111      112222111223344444444    49999


Q ss_pred             EEcCCCc---eEE-EEe-----cccCCCeEEEEecCC-----CCEEEEEeCCCc--eeecCCCcEE--EecCCCCcEEEE
Q 016134          158 WFCGEGL---TML-AKL-----EGHEKAVSGIALPLR-----SDKLFSGSRDGT--AWNIESSAEF--SLDGPVGEVYSM  219 (394)
Q Consensus       158 Wd~~~~~---~~~-~~l-----~~h~~~V~~l~~s~~-----~~~l~sgs~Dg~--vWd~~~~~~~--~~~~~~~~v~~l  219 (394)
                      |+.....   ... ..+     ..+...+..++|.++     +.++++++.|+.  +|++......  ....+......+
T Consensus        94 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  173 (393)
T d1sq9a_          94 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL  173 (393)
T ss_dssp             EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred             EEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceec
Confidence            9874321   111 111     235677888888765     468999999999  6997543221  111111111111


Q ss_pred             EEcCCEEEEEecCCCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEE------cCCCCCcEEEEEc--CCEEEE
Q 016134          220 VVANEMLFAGAQDGHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTL------NDHTDAPMSLLCW--DQFLLS  290 (394)
Q Consensus       220 ~~~~~~l~~~~~~~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~------~~h~~~v~~l~~~--~~~l~s  290 (394)
                      .-     .......+...+.+++|+ ..+|++|+.|++|+|||+++++++..+      .+|..+|.+++|+  +++|++
T Consensus       174 ~~-----~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  248 (393)
T d1sq9a_         174 QG-----TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  248 (393)
T ss_dssp             EE-----EECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             cc-----ceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeee
Confidence            10     001122556678899998 458999999999999999998877654      4689999999998  789999


Q ss_pred             EeCCCc---EEEEEeCCCceeeEeec-------------ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce
Q 016134          291 CSLDHT---IKVWFATGRGNLEAAYT-------------HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME  354 (394)
Q Consensus       291 ~s~Dg~---i~vwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~  354 (394)
                      ++.|++   |++||+++++.+..+..             |..  .+.  +++|+|+++ +|++++.|++|+|||++++++
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~--~V~--~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVM--SLSFNDSGE-TLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEE--EEEECSSSS-EEEEEETTSEEEEEETTTTEE
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccceeeeecccC--cee--eeccCCCCC-eeEEECCCCEEEEEECCCCCE
Confidence            999874   99999998887776642             322  233  345799998 999999999999999999998


Q ss_pred             eEEEec----------------------CCcEEEEEECCCC-----------EEEEEeCCCeEEEEe
Q 016134          355 RGRIFS----------------------KHEVRVIEIGPDK-----------LFFTGDGAGMLGVWK  388 (394)
Q Consensus       355 ~~~~~~----------------------~~~v~~l~~sp~~-----------~l~tgs~Dg~I~vWd  388 (394)
                      +..+..                      ...+..+.|.+++           .|++.+.|+.|++|.
T Consensus       324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            887752                      1246777776532           488999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.6e-24  Score=194.41  Aligned_cols=264  Identities=14%  Similarity=0.077  Sum_probs=185.0

Q ss_pred             cCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc--eEEEEecccCCCeEEEEecCC-CCEEEEEeCCCc
Q 016134          121 DESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL--TMLAKLEGHEKAVSGIALPLR-SDKLFSGSRDGT  197 (394)
Q Consensus       121 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~--~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~  197 (394)
                      -..+|+..|++++ |+|++.+|++++.||    +|+|||+.++.  ..+....+|..+|++++|+|+ +.+|++|+.|+.
T Consensus         6 ~~~~h~d~I~~l~-fsp~~~~L~s~s~Dg----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           6 IEQAPKDYISDIK-IIPSKSLLLITSWDG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CSSCCSSCEEEEE-EEGGGTEEEEEETTS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             cCCCCCCCEEEEE-EeCCCCEEEEEECCC----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            4567888999999 999999999887666    99999986442  233444579999999999986 568999999998


Q ss_pred             --eeecCCCcEEEe-cCCC-CcEEEEEEc--CCEEEEEecC--------------------------CCCCCEEEEEecC
Q 016134          198 --AWNIESSAEFSL-DGPV-GEVYSMVVA--NEMLFAGAQD--------------------------GHTRPVTCLAVGR  245 (394)
Q Consensus       198 --vWd~~~~~~~~~-~~~~-~~v~~l~~~--~~~l~~~~~~--------------------------~h~~~V~~l~~~~  245 (394)
                        +|++........ ..+. .......+.  ...+++++.+                          ........+...+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence              699987766532 2222 222222222  2366665544                          1122233444457


Q ss_pred             CeEEEEeCCCeEEEEeCCCCcee---EEEcCCCCCcEEEEEc---CCEEEEEeCCCcEEEEEeCCCceee------Eeec
Q 016134          246 SRLCSGSMDNTIRVWELDTLEPV---MTLNDHTDAPMSLLCW---DQFLLSCSLDHTIKVWFATGRGNLE------AAYT  313 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~~~---~~~~~h~~~v~~l~~~---~~~l~s~s~Dg~i~vwd~~~~~~~~------~~~~  313 (394)
                      +.+++++.|+.|++||++..+..   .....+...+.+..+.   +..+++++.|+.+.+|++.......      ....
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            89999999999999999876532   2233445556666554   6789999999999999976532211      1111


Q ss_pred             c-----cCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEE
Q 016134          314 H-----KEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVW  387 (394)
Q Consensus       314 ~-----~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vW  387 (394)
                      .     .........+++|+|++. +|++|+.||.|+|||+.+++.+..+...+.+..++|+|++ +|++++.|..+++|
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             eeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            0     011111122345899999 8999999999999999999988887666677778888888 88888888888777


Q ss_pred             eCC
Q 016134          388 KLL  390 (394)
Q Consensus       388 d~~  390 (394)
                      ...
T Consensus       320 ~~~  322 (342)
T d1yfqa_         320 AAI  322 (342)
T ss_dssp             SSS
T ss_pred             eee
Confidence            654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=193.79  Aligned_cols=237  Identities=21%  Similarity=0.325  Sum_probs=185.5

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      ++..|+|||.|++|+|||++++.+..            ...||...|.++. +  ++.++++++.++    .|++|++..
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~------------~l~~H~~~V~~v~-~--~~~~l~s~s~D~----~i~~~~~~~   84 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKR------------ILTGHTGSVLCLQ-Y--DERVIITGSSDS----TVRVWDVNT   84 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEE------------EECCCSSCEEEEE-C--CSSEEEEEETTS----CEEEEESSS
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEE------------EEecCCCCEeeee-c--ccceeecccccc----ccccccccc
Confidence            67789999999999999999877543            4568888998887 6  456777665554    999999988


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE----EecCCCCcEEEEEEcCCEEEEEecC----
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF----SLDGPVGEVYSMVVANEMLFAGAQD----  232 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~~----  232 (394)
                      + ........+....  ..+.+....++++..++.  +|+.......    .+..+...+..+.+.+..+++++.+    
T Consensus        85 ~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~  161 (293)
T d1p22a2          85 G-EMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK  161 (293)
T ss_dssp             C-CEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             c-ccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCcee
Confidence            7 4444444444433  334456678999999888  6998876532    4567888888888888877776655    


Q ss_pred             --------------CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCCcEE
Q 016134          233 --------------GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDHTIK  298 (394)
Q Consensus       233 --------------~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~  298 (394)
                                    +|...|..+.+++..+++++.|++|++||+++.+.+..+.+|...+..+...+.+|++++.|+.|+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~  241 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK  241 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred             eecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEE
Confidence                          677888888999999999999999999999999999999999999988888899999999999999


Q ss_pred             EEEeCCC---------ceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          299 VWFATGR---------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       299 vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                      +||+...         ..+..+..|...+..++    |  ++. +|++++.|++|+|||
T Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~----~--d~~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ----F--DEF-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE----E--CSS-CEEECCSSSEEEEEC
T ss_pred             EEECCCCccccccCCceeeEEecCCCCCEEEEE----E--cCC-EEEEEecCCEEEEeC
Confidence            9997532         34455666665544433    3  445 799999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-23  Score=191.43  Aligned_cols=227  Identities=14%  Similarity=0.175  Sum_probs=161.1

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcE----EEecCCCCcEEEEEEcCC---EEEEEecCC--
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAE----FSLDGPVGEVYSMVVANE---MLFAGAQDG--  233 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~----~~~~~~~~~v~~l~~~~~---~l~~~~~~~--  233 (394)
                      +.++.+++|++.|++|+|+|++++|++|+.|++  |||++++..    .....|..+|.+++|+++   .+++|+.|+  
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            678889999999999999999999999999999  699976543    234568999999999875   688887761  


Q ss_pred             -----------------CCCCEEEEE--ecCCeEEEEeCCCeEEEEeCCCCce----eEEEcCCC----CCcEEEEEcCC
Q 016134          234 -----------------HTRPVTCLA--VGRSRLCSGSMDNTIRVWELDTLEP----VMTLNDHT----DAPMSLLCWDQ  286 (394)
Q Consensus       234 -----------------h~~~V~~l~--~~~~~l~sgs~Dg~V~iwd~~~~~~----~~~~~~h~----~~v~~l~~~~~  286 (394)
                                       +........  .....+++++.|+++++||+++...    ......+.    .....+...+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence                             112222222  2378899999999999999865432    22222222    22234444488


Q ss_pred             EEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee------EEE--
Q 016134          287 FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER------GRI--  358 (394)
Q Consensus       287 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~------~~~--  358 (394)
                      .+++++.|+.|++||++.......................+..++. .+++++.|+.+.+|++......      ..+  
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCC-EEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            9999999999999999876654443332222222221222344555 8999999999999997654211      111  


Q ss_pred             --------ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          359 --------FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       359 --------~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                              .+...|++++|+|++ +|++|+.||.|++||++++
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence                    113458999999999 9999999999999999865

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.5e-22  Score=191.42  Aligned_cols=221  Identities=14%  Similarity=0.132  Sum_probs=157.1

Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCc-------EEEecCCCCcEEEEEE------cCC---EEEE
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSA-------EFSLDGPVGEVYSMVV------ANE---MLFA  228 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~-------~~~~~~~~~~v~~l~~------~~~---~l~~  228 (394)
                      ....++|.+.|.+|++++  ++|+|++.|++  |||..+.+       ......+...+..+..      ...   .+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            456689999999999864  79999999999  69976543       2222233332222211      111   3334


Q ss_pred             EecC----------------------------CCCCCEEEEEec-------CCeEEEEeCCCeEEEEeCCCCc-------
Q 016134          229 GAQD----------------------------GHTRPVTCLAVG-------RSRLCSGSMDNTIRVWELDTLE-------  266 (394)
Q Consensus       229 ~~~~----------------------------~h~~~V~~l~~~-------~~~l~sgs~Dg~V~iwd~~~~~-------  266 (394)
                      ++.+                            .+...+..+++.       +.++++++.|++|++||+....       
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            4333                            234456666664       3578999999999999984211       


Q ss_pred             --------eeE---EEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeeccc----CCcceEEEEeeECCC
Q 016134          267 --------PVM---TLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK----EDNGVLALGGLNDPD  330 (394)
Q Consensus       267 --------~~~---~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~  330 (394)
                              ...   ....+...+++++|+ ..+|++|+.|++|+|||+.+++.+..+....    +...+.+  +.|+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~--l~~spd  242 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS--VKFSPQ  242 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE--EEECSS
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEE--cccccc
Confidence                    111   112355678999998 5599999999999999999887766554321    1123333  347999


Q ss_pred             CCcEEEEEeCCC---eEEEEECCCCceeEEEe--------------cCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          331 GKPVLICACNDN---TVHLYELPSFMERGRIF--------------SKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       331 g~~~l~sgs~dg---~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ++ +|++|+.|+   .|++||+++++.+..+.              |...|++++|+|++ +|++++.|++|+|||+.+.
T Consensus       243 g~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         243 GS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             TT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             cc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            99 999999887   49999999998887764              35679999999999 9999999999999999764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5e-22  Score=178.72  Aligned_cols=215  Identities=14%  Similarity=0.108  Sum_probs=166.7

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCC-EEEEEecC---------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANE-MLFAGAQD---------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~---------  232 (394)
                      +++++|+||.++|++|+|+|    |+||+.||+  +||+.++    ...|...|.++.+.++ .+++++.|         
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~   75 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT   75 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----CCCCCCCEEEEEecCCCeEEEEeecccccccccc
Confidence            78999999999999999987    999999999  5998764    3578889999999887 77777766         


Q ss_pred             --CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEcCCEEEEEeCCC-cEEEEEeCCCcee
Q 016134          233 --GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCWDQFLLSCSLDH-TIKVWFATGRGNL  308 (394)
Q Consensus       233 --~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg-~i~vwd~~~~~~~  308 (394)
                        .....+.++.+. +..++..+.++.+.+|+..+++.+..+.. ...+.++...++.+++++.|+ .+++|++...+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~  154 (287)
T d1pgua2          76 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS  154 (287)
T ss_dssp             EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred             ccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc-cceeeeeeccCcceeeeccccceeeeeecccccee
Confidence              234456777776 45666667788899999999998888774 456677777788888877765 7999998755444


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe--cCCcEEEEEECCC----------C-EE
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF--SKHEVRVIEIGPD----------K-LF  375 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp~----------~-~l  375 (394)
                      ..+... ....+.  ++.|+|++. +|++++.|+.|++||+.++.......  +...|.+++|+|+          + +|
T Consensus       155 ~~~~~~-~~~~v~--~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         155 FDLKTP-LRAKPS--YISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             EECSSC-CSSCEE--EEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             eeeeec-cCCcee--EEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCee
Confidence            333321 112233  334799999 89999999999999999987665432  3667999999873          3 79


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 016134          376 FTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~~~  392 (394)
                      ++|+.|++|++||++..
T Consensus       231 ~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         231 ATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EEEETTSCEEEEESSCT
T ss_pred             EeecCCCeEEEEECCCC
Confidence            99999999999998764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=3.3e-23  Score=191.59  Aligned_cols=272  Identities=8%  Similarity=0.014  Sum_probs=175.2

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      |+.+++++ .+..+++||++++...              ..+|...|..+. |+|++.+|+..+.+.  ...|++||.++
T Consensus        14 dG~~~a~~-~~g~v~v~d~~~~~~~--------------~~~~~~~v~~~~-~spDg~~l~~~~~~~--g~~v~v~d~~~   75 (360)
T d1k32a3          14 DGDLIAFV-SRGQAFIQDVSGTYVL--------------KVPEPLRIRYVR-RGGDTKVAFIHGTRE--GDFLGIYDYRT   75 (360)
T ss_dssp             GGGCEEEE-ETTEEEEECTTSSBEE--------------ECSCCSCEEEEE-ECSSSEEEEEEEETT--EEEEEEEETTT
T ss_pred             CCCEEEEE-ECCeEEEEECCCCcEE--------------EccCCCCEEEEE-ECCCCCEEEEEEcCC--CCEEEEEECCC
Confidence            45555654 4568999999876643              125667899998 999999998665443  34799999987


Q ss_pred             CceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE-EecCCCCcEEEEEEcCC--EEEEEecCCCCCC
Q 016134          163 GLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF-SLDGPVGEVYSMVVANE--MLFAGAQDGHTRP  237 (394)
Q Consensus       163 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~~~h~~~  237 (394)
                      +  ....+..|...|.+++|+|++++|++++.++.  +|++++++.. .+..+...+.+++|+|+  .++.+..+     
T Consensus        76 ~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~-----  148 (360)
T d1k32a3          76 G--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL-----  148 (360)
T ss_dssp             C--CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE-----
T ss_pred             C--cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccc-----
Confidence            6  34567899999999999999999999999998  5999988876 44556667777777776  33322211     


Q ss_pred             EEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC-------Cce-
Q 016134          238 VTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG-------RGN-  307 (394)
Q Consensus       238 V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~-------~~~-  307 (394)
                             ....+.+..++.+++||+.+++... +..+...+..+.|+  +++|++++.|+.+++||...       ... 
T Consensus       149 -------~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~  220 (360)
T d1k32a3         149 -------KHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP  220 (360)
T ss_dssp             -------CSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred             -------cccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccce
Confidence                   1111123334455566655544332 23344555555555  66666666655555554210       111 


Q ss_pred             ---------------------------------------------eeEeecccCCcceEEEE-eeECCCCCcEEEEEeCC
Q 016134          308 ---------------------------------------------LEAAYTHKEDNGVLALG-GLNDPDGKPVLICACND  341 (394)
Q Consensus       308 ---------------------------------------------~~~~~~~~~~~~~~~~~-~~~s~~g~~~l~sgs~d  341 (394)
                                                                   ...+..+..  ....+. ..+++.+. ++++++.+
T Consensus       221 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~  297 (360)
T d1k32a3         221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES--SILIYSVPVHGEFAA-YYQGAPEK  297 (360)
T ss_dssp             EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS--EEEEEECCCCCSHHH-HHHCCCCC
T ss_pred             EEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCC--CceEEEEEecCCCee-EEEecCCC
Confidence                                                         111111111  011111 01111222 45667788


Q ss_pred             CeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          342 NTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       342 g~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +.|++||+.+++....   ...|.+++|+||| +|++++.||.|++||++.++
T Consensus       298 ~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         298 GVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             CEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            9999999998765332   3468999999999 99999999999999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=4e-19  Score=159.69  Aligned_cols=258  Identities=12%  Similarity=0.070  Sum_probs=184.3

Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceEE
Q 016134           88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTML  167 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~  167 (394)
                      ++.+.|.+|.+||+++++....           ...|.  ....++ ++|++.+++...   ..++.|++||+.++ +.+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~-----------i~~g~--~p~~va-~spdG~~l~v~~---~~~~~i~v~d~~t~-~~~   67 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTAT-----------IPVGS--NPMGAV-ISPDGTKVYVAN---AHSNDVSIIDTATN-NVI   67 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE-----------EECSS--SEEEEE-ECTTSSEEEEEE---GGGTEEEEEETTTT-EEE
T ss_pred             EEECCCCEEEEEECCCCeEEEE-----------EECCC--CceEEE-EeCCCCEEEEEE---CCCCEEEEEECCCC-cee
Confidence            5678899999999999876531           12221  345677 999999875322   23348999999887 778


Q ss_pred             EEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec
Q 016134          168 AKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG  244 (394)
Q Consensus       168 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~  244 (394)
                      .++..|. .+..++|++++..++..+.+..   +|+..+++.......                      .....++.++
T Consensus        68 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~  124 (301)
T d1l0qa2          68 ATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----------------------GKSPLGLALS  124 (301)
T ss_dssp             EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------SSSEEEEEEC
T ss_pred             eeeeccc-cccccccccccccccccccccceeeecccccceeeeeccc----------------------cccceEEEee
Confidence            8888776 4689999999988776665554   699988877643322                      2344455554


Q ss_pred             --CCe-EEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC-CcEEEEEeCCCceeeEeecccCCc
Q 016134          245 --RSR-LCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD-HTIKVWFATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       245 --~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~  318 (394)
                        +.. ++++..++.+.+|+..+.+.+..+..+ ..+..+.+.  +..++++..+ +.+.+|+....+.........   
T Consensus       125 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  200 (301)
T d1l0qa2         125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---  200 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---
T ss_pred             cCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccC---
Confidence              444 456677899999999999988888754 456778887  5666666654 567777766655544443322   


Q ss_pred             ceEEEEeeECCCCCcEEEEE--eCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EE-EEEeCCCeEEEEeCCCC
Q 016134          319 GVLALGGLNDPDGKPVLICA--CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LF-FTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l-~tgs~Dg~I~vWd~~~~  392 (394)
                      ...  ...+++++..++++.  ..++.|++||+.+++.+..+.....+.+++|+||| +| ++++.|+.|++||+.+.
T Consensus       201 ~~~--~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         201 APS--GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEE--EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             Ccc--eeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            122  234688998544443  33478999999999998888877789999999999 54 68888999999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.1e-20  Score=180.39  Aligned_cols=284  Identities=9%  Similarity=0.006  Sum_probs=190.9

Q ss_pred             ccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc-
Q 016134           86 WVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL-  164 (394)
Q Consensus        86 ~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~-  164 (394)
                      .+++.++|.+|+|||++++.....           ...|  ..+..++ ++|+++++++++.++    +|++||+.++. 
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~-----------l~~g--~~~~~va-fSPDGk~l~~~~~d~----~v~vwd~~t~~~   95 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKV-----------IDTG--YAVHISR-MSASGRYLLVIGRDA----RIDMIDLWAKEP   95 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEE-----------EECC--SSEEEEE-ECTTSCEEEEEETTS----EEEEEETTSSSC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE-----------EeCC--CCeeEEE-ECCCCCEEEEEeCCC----CEEEEEccCCce
Confidence            458899999999999999886531           1222  2578888 999999998766544    99999998763 


Q ss_pred             eE---EEEecccCCCeEEEEecCCCCEEEEEe-CCCc--eeecCCCcEEEe-cC-----------CCCcEEEEEEcCC--
Q 016134          165 TM---LAKLEGHEKAVSGIALPLRSDKLFSGS-RDGT--AWNIESSAEFSL-DG-----------PVGEVYSMVVANE--  224 (394)
Q Consensus       165 ~~---~~~l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~--vWd~~~~~~~~~-~~-----------~~~~v~~l~~~~~--  224 (394)
                      ..   +....+|...+.+++|+|||++|++++ .++.  +||.+++..... ..           +.+....+.++++  
T Consensus        96 ~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2          96 TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence            22   233346778888899999999986655 5555  699999877632 21           2334455555554  


Q ss_pred             EEEEEecC--------------------CCCCCEEEEEec--CCeEEEE-eCCCeEEEEeCCCCceeEEEcCC--CCCcE
Q 016134          225 MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSG-SMDNTIRVWELDTLEPVMTLNDH--TDAPM  279 (394)
Q Consensus       225 ~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sg-s~Dg~V~iwd~~~~~~~~~~~~h--~~~v~  279 (394)
                      .++....+                    .+...+..+.++  +++++++ ..+..+.++|..+++.+..+...  .....
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence            22222211                    355667778886  5555554 46778999999999988776532  22222


Q ss_pred             EEEEc--CC---EEEEEeCCCcEEEEEeCCC-------ceeeEeecccCCcceEEEEeeECCCCCcEEE-------EEeC
Q 016134          280 SLLCW--DQ---FLLSCSLDHTIKVWFATGR-------GNLEAAYTHKEDNGVLALGGLNDPDGKPVLI-------CACN  340 (394)
Q Consensus       280 ~l~~~--~~---~l~s~s~Dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~-------sgs~  340 (394)
                      .+.+.  +.   ..++.+.|+.+.+|+....       +....+..|......++    |+|+++ +|+       +++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~----~sPdg~-~l~v~~~~~~s~~~  330 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK----THPKSS-HLYVDTTFNPDARI  330 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEE----CCTTCS-EEEECCTTCSSHHH
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEE----cCCCCc-eEEEeecCCCCccc
Confidence            33332  22   2233445888989886543       45555666554444443    599999 666       3556


Q ss_pred             CCeEEEEECCCCceeEEEec----------CCcEEEEEECCCC-EE-EEE----eCCCeEEEEeCCCC
Q 016134          341 DNTVHLYELPSFMERGRIFS----------KHEVRVIEIGPDK-LF-FTG----DGAGMLGVWKLLAK  392 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~~----------~~~v~~l~~sp~~-~l-~tg----s~Dg~I~vWd~~~~  392 (394)
                      |++|+|||+.+++...++..          ...|..++|+||| +| +++    +.++.|+|||..+.
T Consensus       331 ~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         331 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             CCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            88999999999887665531          3459999999999 44 443    46889999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=3.8e-19  Score=162.17  Aligned_cols=263  Identities=12%  Similarity=0.024  Sum_probs=177.8

Q ss_pred             cccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCc
Q 016134           85 LWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGL  164 (394)
Q Consensus        85 ~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~  164 (394)
                      .++++++.|++|+|||++++......          -...+...+..++ ++|+++++...   +..++.|++||+.++ 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i----------~~~~~~~~~~~i~-~spDg~~l~v~---~~~~~~v~v~D~~t~-   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI----------TIADAGPTPMVPM-VAPGGRIAYAT---VNKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE----------ECTTCTTCCCCEE-ECTTSSEEEEE---ETTTTEEEEEETTTC-
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE----------ECCCCCCCccEEE-ECCCCCEEEEE---ECCCCeEEEEECCCC-
Confidence            35788999999999999988764311          1122223456677 99999887432   233459999999987 


Q ss_pred             eEEEEecccC-----CCeEEEEecCCCCEEEEEeCCCc--------------eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          165 TMLAKLEGHE-----KAVSGIALPLRSDKLFSGSRDGT--------------AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       165 ~~~~~l~~h~-----~~V~~l~~s~~~~~l~sgs~Dg~--------------vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      +++..+..+.     ..+..++|+|++++++++..+..              +||..+++......              
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------------  132 (337)
T d1pbyb_          67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------------  132 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------------
T ss_pred             cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--------------
Confidence            6777776654     34568999999999998876543              46666665543221              


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCc------EEEEEc-----C-------
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAP------MSLLCW-----D-------  285 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v------~~l~~~-----~-------  285 (394)
                              +...+..++|+  +.++++++.  .+.+||..+++....+..+....      ....+.     .       
T Consensus       133 --------~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (337)
T d1pbyb_         133 --------APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF  202 (337)
T ss_dssp             --------CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEE
T ss_pred             --------ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeee
Confidence                    22334555665  667777764  47789999998888775432211      000000     0       


Q ss_pred             -------CEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE
Q 016134          286 -------QFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI  358 (394)
Q Consensus       286 -------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~  358 (394)
                             ..+.....++.+.+||+..+........... ..  .....+++++. +++.+  ++.|++||+.+++.+..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~--~~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD-VF--YFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-SC--EEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC-cc--eEEEEecccce-EEEEc--cccEEEEECCCCcEEEEE
Confidence                   1111122345688999887765544333222 12  22334688888 66544  589999999999999999


Q ss_pred             ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCC
Q 016134          359 FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       359 ~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~  392 (394)
                      ...+.+.+++|+||| +|++++.|+.|++||+.+.
T Consensus       277 ~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            888889999999999 9999999999999999764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=8e-19  Score=167.96  Aligned_cols=289  Identities=9%  Similarity=-0.034  Sum_probs=184.5

Q ss_pred             cccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCC
Q 016134           83 NNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGE  162 (394)
Q Consensus        83 ~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~  162 (394)
                      .+...++.|+|+++.|||.+++.+...-           ..|  ..+..++ |+|+++++++++.+    ++|++||+.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~-----------~~g--~~~~~v~-fSpDG~~l~~~s~d----g~v~~~d~~t   92 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVL-----------DTG--YAVHISR-LSASGRYLFVIGRD----GKVNMIDLWM   92 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEE-----------ECS--SCEEEEE-ECTTSCEEEEEETT----SEEEEEETTS
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEE-----------eCC--CCeeEEE-ECCCCCEEEEEcCC----CCEEEEEeeC
Confidence            3344589999999999999999876422           223  2578888 99999999876554    4999999976


Q ss_pred             Cc-eE---EEEecccCCCeEEEEecCCCCEE-EEEeCCCc--eeecCCCcEEEe-c-----------CCCCcEEEEEEcC
Q 016134          163 GL-TM---LAKLEGHEKAVSGIALPLRSDKL-FSGSRDGT--AWNIESSAEFSL-D-----------GPVGEVYSMVVAN  223 (394)
Q Consensus       163 ~~-~~---~~~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~--vWd~~~~~~~~~-~-----------~~~~~v~~l~~~~  223 (394)
                      +. +.   +....+|.+.+.+.+|+|||++| +++..++.  |||.++++.+.. .           .+......+.+++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence            52 22   33345677888888999999986 67777887  699999887632 1           2345566777777


Q ss_pred             C--EEEEEecC--------------------CCCCCEEEEEec--CCeEEEEe-CCCeEEEEeCCCCceeEEEcC-----
Q 016134          224 E--MLFAGAQD--------------------GHTRPVTCLAVG--RSRLCSGS-MDNTIRVWELDTLEPVMTLND-----  273 (394)
Q Consensus       224 ~--~l~~~~~~--------------------~h~~~V~~l~~~--~~~l~sgs-~Dg~V~iwd~~~~~~~~~~~~-----  273 (394)
                      +  .+++...+                    .+...+..++|+  ++++++++ .+..+.++|.++++.+..+..     
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~  252 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  252 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccc
Confidence            6  33333222                    234456677787  56666555 466899999998887776642     


Q ss_pred             CCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCCc-------eeeEeecccC--------CcceEEEE-----------
Q 016134          274 HTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGRG-------NLEAAYTHKE--------DNGVLALG-----------  324 (394)
Q Consensus       274 h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~~-------~~~~~~~~~~--------~~~~~~~~-----------  324 (394)
                      |........+.  +...++.. .|+.|.+|+.....       ....+..+..        +.....+.           
T Consensus       253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~  332 (432)
T d1qksa2         253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS  332 (432)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred             ccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCee
Confidence            33444444444  23333332 37788888764422       1122211110        00000000           


Q ss_pred             -eeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEe-----CCCeEEEEeCCCC
Q 016134          325 -GLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGD-----GAGMLGVWKLLAK  392 (394)
Q Consensus       325 -~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs-----~Dg~I~vWd~~~~  392 (394)
                       ....||++ .|++++.|+.+++|++.++..+.  .+...|..++|+||| +|+.+.     .++.|.|||..+.
T Consensus       333 ~sv~vpDg~-~la~~s~d~~~k~w~~~~~~~l~--~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~  404 (432)
T d1qksa2         333 GSVAVFDIK-AMTGDGSDPEFKTLPIAEWAGIT--EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  404 (432)
T ss_dssp             TCEEEEEGG-GCCCSSSCCCEEEECHHHHHTCC--SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             eEEEEEech-hhcccccCCceEecccccccccC--CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence             00125666 67778888888888875543222  345578999999999 554443     5789999997764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.6e-17  Score=152.81  Aligned_cols=184  Identities=5%  Similarity=-0.015  Sum_probs=145.5

Q ss_pred             EEEecC-CCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCC
Q 016134          179 GIALPL-RSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMD  254 (394)
Q Consensus       179 ~l~~s~-~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~D  254 (394)
                      .-.||| ||+++|+++.... +||++++....+                       +|...|.+++|+  +++|++++.+
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-----------------------~~~~~v~~~~~spDg~~l~~~~~~   63 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-----------------------PEPLRIRYVRRGGDTKVAFIHGTR   63 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEEC-----------------------SCCSCEEEEEECSSSEEEEEEEET
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEEc-----------------------cCCCCEEEEEECCCCCEEEEEEcC
Confidence            457999 9999999986544 799988877654                       456667777776  5567666654


Q ss_pred             C--eEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCC
Q 016134          255 N--TIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPD  330 (394)
Q Consensus       255 g--~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  330 (394)
                      .  .|++||+++++.. .+..|...|.+++|+  +++|++++.++.+++|++...+....+..+......++    |+|+
T Consensus        64 ~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~spd  138 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT----ISDN  138 (360)
T ss_dssp             TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE----ECTT
T ss_pred             CCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchh----hccc
Confidence            3  7999999877654 567899999999998  78999999999999999998887777766655544444    5999


Q ss_pred             CCcEEEEE----------eCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          331 GKPVLICA----------CNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       331 g~~~l~sg----------s~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      |+ +|+.+          ..++.+++||+.+++......+...+..++|+|+| +|++++.|+.+++|+...
T Consensus       139 g~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         139 SR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             SC-EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ee-eeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence            99 66643          33457999999988776655567789999999999 999999999999998653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=8.7e-17  Score=146.74  Aligned_cols=245  Identities=11%  Similarity=0.051  Sum_probs=163.7

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCCCCEEE-EEeCCCc--eeecCCCcEEEe-
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLRSDKLF-SGSRDGT--AWNIESSAEFSL-  209 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~-sgs~Dg~--vWd~~~~~~~~~-  209 (394)
                      +++.+.|++++..++    .|++||+.++ +++.+++ .|...+.+++|+|||++|+ ++..++.  +||+.+++.... 
T Consensus         4 ~~~~~~~l~~~~~~~----~v~v~D~~t~-~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPN----NLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCTTCEEEEEEETTT----EEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCCcEEEEEcCCC----EEEEEECCCC-CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            788888988777666    9999999988 8888886 5677889999999999875 5556776  599999987632 


Q ss_pred             cCCC------CcEEEEEEcCC--EEEEEecC----------------------C----------CCCCEEEEEec-CCeE
Q 016134          210 DGPV------GEVYSMVVANE--MLFAGAQD----------------------G----------HTRPVTCLAVG-RSRL  248 (394)
Q Consensus       210 ~~~~------~~v~~l~~~~~--~l~~~~~~----------------------~----------h~~~V~~l~~~-~~~l  248 (394)
                      ....      ..+..++|+++  .++++..+                      +          ....+..+.+. +..+
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            2111      13456888887  55554432                      0          01112222232 2333


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc----------------------------CCEEEEEeCCCcEEEE
Q 016134          249 CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW----------------------------DQFLLSCSLDHTIKVW  300 (394)
Q Consensus       249 ~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~----------------------------~~~l~s~s~Dg~i~vw  300 (394)
                      +..+  ..+.+||+.+++.+..+..+... ..+.+.                            ...++++..+..+.+|
T Consensus       159 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         159 YVAG--PDIYKMDVKTGKYTVALPLRNWN-RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCC-CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEeC--CcceEEEccCCCEEEEEecCCCc-cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            3332  45788999998888887644221 111010                            2234445556778889


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEe
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs  379 (394)
                      |+.++........... ....  ...+++++. .++... ++.|++||+.+++.+..+...+.+.+++|+||| +|++++
T Consensus       236 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~-~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLT-ELYF--TGLRSPKDP-NQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             ETTTCCEEEEEEEECS-SCEE--EEEECSSCT-TEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred             ECCCCceEEEEeeccc-ceeE--EEEEeCCCC-EEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe
Confidence            9887765554433222 1222  233577777 444444 468999999999999888888889999999999 999999


Q ss_pred             CCCeEEEEeCCCC
Q 016134          380 GAGMLGVWKLLAK  392 (394)
Q Consensus       380 ~Dg~I~vWd~~~~  392 (394)
                      .|+.|++||+.+.
T Consensus       311 ~d~~v~v~D~~t~  323 (346)
T d1jmxb_         311 TFNDLAVFNPDTL  323 (346)
T ss_dssp             BSSEEEEEETTTT
T ss_pred             CCCcEEEEECccC
Confidence            9999999999864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=4.9e-15  Score=137.29  Aligned_cols=265  Identities=10%  Similarity=-0.043  Sum_probs=172.2

Q ss_pred             CccceeeeccccccccccCCC-eecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCC-------
Q 016134          125 DKSTSKKTTLKNVCCHWLLGN-CVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDG-------  196 (394)
Q Consensus       125 ~~~~v~~~~~~~~~~~~~~~~-~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-------  196 (394)
                      +...+...+ ++|++..+... ....+....|.+||..++ +.+.++..+..+  .++|+|||++|++++.+.       
T Consensus        19 ~~~p~~~~a-~spdg~~~~~~~~~~~~~~~~v~v~D~~tg-~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          19 ADGPTNDEA-PGADGRRSYINLPAHHSAIIQQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCccccc-cCCCCCEEEEEcccccCCCceEEEEECCCC-CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            334556666 88888876432 223344557999999888 777788776654  799999999999987543       


Q ss_pred             ---c--eeecCCCcEEE-ecCCCCcE-------EEEEEcCC--EEEEEecC----------------CCCCCEEEEEec-
Q 016134          197 ---T--AWNIESSAEFS-LDGPVGEV-------YSMVVANE--MLFAGAQD----------------GHTRPVTCLAVG-  244 (394)
Q Consensus       197 ---~--vWd~~~~~~~~-~~~~~~~v-------~~l~~~~~--~l~~~~~~----------------~h~~~V~~l~~~-  244 (394)
                         .  +||..+++.+. +..+....       ..+.|+++  .+++...+                .+.....++.++ 
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  174 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence               2  79999998763 33333222       23555555  33333322                122334455554 


Q ss_pred             -C-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCC------CcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          245 -R-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTD------APMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       245 -~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~------~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                       + ..+++.+.|+++.+||...++.......+..      ....+.+. +..++..+.++.+.+|+..............
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence             3 4568889999999999998887666543221      22333444 4566677788999999987654332221110


Q ss_pred             CCcce--------EEEEeeECCCCCc---------EEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC---EE
Q 016134          316 EDNGV--------LALGGLNDPDGKP---------VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK---LF  375 (394)
Q Consensus       316 ~~~~~--------~~~~~~~s~~g~~---------~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~---~l  375 (394)
                      .....        ......+++++..         .+++...++.|.+||+.+++.+..+.....+..++|+|||   ++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~  334 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEE
Confidence            00000        0001122344331         4456677789999999999999998888899999999998   35


Q ss_pred             EEEeCCCeEEEEeCCCCC
Q 016134          376 FTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       376 ~tgs~Dg~I~vWd~~~~~  393 (394)
                      ++++.|+.|++||+.+..
T Consensus       335 vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         335 ALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEeCCCCeEEEEECCCCC
Confidence            788999999999998754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=1.2e-16  Score=152.20  Aligned_cols=227  Identities=11%  Similarity=0.023  Sum_probs=145.5

Q ss_pred             cCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          148 RGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       148 ~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      ....++.|+|||..++ +++.++..|. .+..++|+|||++|++++.|++  +||+.+++......       +.     
T Consensus        37 ~~~~dg~v~vwD~~t~-~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~-------i~-----  102 (426)
T d1hzua2          37 TLRDAGQIALVDGDSK-KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-------IK-----  102 (426)
T ss_dssp             EETTTTEEEEEETTTC-SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-------EE-----
T ss_pred             EEcCCCEEEEEECCCC-cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE-------Ee-----
Confidence            3445679999999998 8888998875 5999999999999999999998  69999887542110       00     


Q ss_pred             EEEEecCCCCCCEEEEEec--CCeE-EEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEE
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RSRL-CSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKV  299 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~~l-~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~v  299 (394)
                          ...+|...+.+++|+  ++++ +++..++.+++||..+++++..+..|...+..+.+.  +. ..+..+.|+...+
T Consensus       103 ----~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2         103 ----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             ----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             ----CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence                001233334444554  5665 555689999999999999998888776655444443  22 3444455555555


Q ss_pred             EEeCCCceeeEeecccCC--------cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEE-------------
Q 016134          300 WFATGRGNLEAAYTHKED--------NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRI-------------  358 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-------------  358 (394)
                      +.......+.........        .......+.++|+++.++++...+..+.+++..+++.+...             
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (426)
T d1hzua2         179 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  258 (426)
T ss_dssp             EEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred             EecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence            544433222221111110        11112233578888866666666677777776655433211             


Q ss_pred             -----------------------------------------ec-CCcEEEEEECCCC-EEE-------EEeCCCeEEEEe
Q 016134          359 -----------------------------------------FS-KHEVRVIEIGPDK-LFF-------TGDGAGMLGVWK  388 (394)
Q Consensus       359 -----------------------------------------~~-~~~v~~l~~sp~~-~l~-------tgs~Dg~I~vWd  388 (394)
                                                               .. ...+..++|+|++ +|+       +++.|++|+|||
T Consensus       259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence                                                     11 2347889999999 777       355688999999


Q ss_pred             CCCC
Q 016134          389 LLAK  392 (394)
Q Consensus       389 ~~~~  392 (394)
                      +.+.
T Consensus       339 ~~t~  342 (426)
T d1hzua2         339 LKNL  342 (426)
T ss_dssp             TTCT
T ss_pred             CCCC
Confidence            8764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.67  E-value=6.8e-14  Score=124.76  Aligned_cols=214  Identities=10%  Similarity=0.100  Sum_probs=155.8

Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEE-EEeCCCc--eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLF-SGSRDGT--AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      +..+++|.|||+.++ +.++++... ..+..++|+|||++|+ +++.++.  +||+.+++.+....              
T Consensus         8 ~~~~~~v~v~D~~t~-~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--------------   71 (301)
T d1l0qa2           8 NSESDNISVIDVTSN-KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------------   71 (301)
T ss_dssp             ETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------------
T ss_pred             ECCCCEEEEEECCCC-eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee--------------
Confidence            445669999999988 777777644 5578999999999875 6667777  69999998764221              


Q ss_pred             EEEEecCCCCCCEEEEEec--CC-eEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEE-EEEeCCCcEEE
Q 016134          226 LFAGAQDGHTRPVTCLAVG--RS-RLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFL-LSCSLDHTIKV  299 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~--~~-~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~Dg~i~v  299 (394)
                             .+ ..+..+.++  +. .++++..++.+.+||..+++....+..+ ..+.++.++  +..+ +++..+..+.+
T Consensus        72 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          72 -------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             -------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -------cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceee
Confidence                   11 234556665  34 4566677889999999999988888754 556778887  5554 56667889999


Q ss_pred             EEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEE
Q 016134          300 WFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tg  378 (394)
                      |+..+......+.....   ..  ...++|++..++++...++.+.+|+.........+.....+..+++++++ .++.+
T Consensus       143 ~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         143 INTVTKAVINTVSVGRS---PK--GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             EETTTTEEEEEEECCSS---EE--EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEE
T ss_pred             eeccccceeeecccCCC---ce--EEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccc
Confidence            99988877766654432   22  22368998855555556678889998888777777777788999999999 44443


Q ss_pred             e---CCCeEEEEeCCCC
Q 016134          379 D---GAGMLGVWKLLAK  392 (394)
Q Consensus       379 s---~Dg~I~vWd~~~~  392 (394)
                      .   .++.|.+||+.+.
T Consensus       218 ~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EECSSCCEEEEEETTTT
T ss_pred             cccceeeeeeeeecCCC
Confidence            3   4578999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=2.4e-16  Score=143.79  Aligned_cols=260  Identities=11%  Similarity=0.006  Sum_probs=164.5

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeE
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFL  155 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i  155 (394)
                      .++++  ++.++++++.|++|++||+++++....           ...++...+..+. ++|++.++...   +..++.|
T Consensus         2 ~a~~~--~~~~l~~~~~~~~v~v~D~~t~~~~~t-----------~~~~~~~~p~~l~-~spDG~~l~v~---~~~~~~v   64 (346)
T d1jmxb_           2 PALKA--GHEYMIVTNYPNNLHVVDVASDTVYKS-----------CVMPDKFGPGTAM-MAPDNRTAYVL---NNHYGDI   64 (346)
T ss_dssp             CCCCT--TCEEEEEEETTTEEEEEETTTTEEEEE-----------EECSSCCSSCEEE-ECTTSSEEEEE---ETTTTEE
T ss_pred             ccCCC--CCcEEEEEcCCCEEEEEECCCCCEEEE-----------EEcCCCCCcceEE-ECCCCCEEEEE---ECCCCcE
Confidence            34555  788999999999999999999886431           1222333456777 99999887432   2334599


Q ss_pred             EEEEcCCCceEEEEecccC------CCeEEEEecCCCCEEEEEeCCCc--------------eeecCCCcEE---EecCC
Q 016134          156 HSWFCGEGLTMLAKLEGHE------KAVSGIALPLRSDKLFSGSRDGT--------------AWNIESSAEF---SLDGP  212 (394)
Q Consensus       156 ~iWd~~~~~~~~~~l~~h~------~~V~~l~~s~~~~~l~sgs~Dg~--------------vWd~~~~~~~---~~~~~  212 (394)
                      ++||+.++ +.+..+....      ..+..++|+|||++|+.++.+..              +|+..+++..   .....
T Consensus        65 ~~~d~~t~-~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  143 (346)
T d1jmxb_          65 YGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM  143 (346)
T ss_dssp             EEEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred             EEEeCccC-eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec
Confidence            99999988 5555554322      34678999999999988875432              4666554432   11111


Q ss_pred             CCcEEEEEEcCC-EEEEEecC-------------------------------------CCCCCEEEEEe----c--CCeE
Q 016134          213 VGEVYSMVVANE-MLFAGAQD-------------------------------------GHTRPVTCLAV----G--RSRL  248 (394)
Q Consensus       213 ~~~v~~l~~~~~-~l~~~~~~-------------------------------------~h~~~V~~l~~----~--~~~l  248 (394)
                      ...+..+.++++ .+++...+                                     .....+.....    .  ...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (346)
T d1jmxb_         144 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  223 (346)
T ss_dssp             CSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             cCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeE
Confidence            122233333333 22222111                                     00011111100    0  2234


Q ss_pred             EEEeCCCeEEEEeCCCCceeEE-EcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEe
Q 016134          249 CSGSMDNTIRVWELDTLEPVMT-LNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGG  325 (394)
Q Consensus       249 ~sgs~Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  325 (394)
                      +++..+..+.+||+.++..... +..|...+..+.++  +.+++... ++.|.+||+.+++.+..+... .....    +
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~-~~~~~----v  297 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-HTYYC----V  297 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCE----E
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC-CCEEE----E
Confidence            5566677899999988776543 45677788888877  45565554 467999999988877666532 22232    3


Q ss_pred             eECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          326 LNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       326 ~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      .|+|||+ +|++++.|+.|+|||+++++.+..+..
T Consensus       298 a~s~DG~-~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         298 AFDKKGD-KLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EECSSSS-CEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCC-EEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            4699999 788889999999999999999988875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.4e-15  Score=136.67  Aligned_cols=271  Identities=10%  Similarity=0.090  Sum_probs=167.3

Q ss_pred             ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCce--
Q 016134           88 SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLT--  165 (394)
Q Consensus        88 ~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~--  165 (394)
                      ++++.|++|++|++++.......          ....+...+..++ ++|++++|..+.   ..++.|++|++.....  
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~----------~~~~~~~~v~~la-~spDG~~L~v~~---~~d~~i~~~~i~~~~~~~   73 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLT----------QVVDVPGQVQPMV-VSPDKRYLYVGV---RPEFRVLAYRIAPDDGAL   73 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEE----------EEEECSSCCCCEE-ECTTSSEEEEEE---TTTTEEEEEEECTTTCCE
T ss_pred             EECCCCCcEEEEEEcCCCCeEEE----------EEEcCCCCEeEEE-EeCCCCEEEEEE---CCCCeEEEEEEeCCCCcE
Confidence            67789999999999854321100          1123445677888 999999985433   3455999999865422  


Q ss_pred             EEEEecccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEE
Q 016134          166 MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLA  242 (394)
Q Consensus       166 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~  242 (394)
                      .......+...+..++|+|||++|++++.++.   +|+..........                   ....+...+.++.
T Consensus        74 ~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~-------------------~~~~~~~~~~~v~  134 (333)
T d1ri6a_          74 TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV-------------------DVVEGLDGCHSAN  134 (333)
T ss_dssp             EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE-------------------EEECCCTTBCCCE
T ss_pred             EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc-------------------cccCCCccceEEE
Confidence            12222334566788999999999999987554   4666655443211                   0113444555566


Q ss_pred             ec--CCeEEEEe-CCCeEEEEeCCCCceeEE------EcCCCCCcEEEEEc--CCEEEEE-eCCCcEEEEEeCCCceee-
Q 016134          243 VG--RSRLCSGS-MDNTIRVWELDTLEPVMT------LNDHTDAPMSLLCW--DQFLLSC-SLDHTIKVWFATGRGNLE-  309 (394)
Q Consensus       243 ~~--~~~l~sgs-~Dg~V~iwd~~~~~~~~~------~~~h~~~v~~l~~~--~~~l~s~-s~Dg~i~vwd~~~~~~~~-  309 (394)
                      ++  ++++++++ .+..|.+|+.........      .......+..+.|+  +..++.. ...+...+|+........ 
T Consensus       135 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (333)
T d1ri6a_         135 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  214 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             eeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee
Confidence            65  55555555 466899999876432221      12234556788887  4555444 456778888865432211 


Q ss_pred             ---Eeeccc--CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe----cCCcEEEEEECCCC-EEEEE-
Q 016134          310 ---AAYTHK--EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF----SKHEVRVIEIGPDK-LFFTG-  378 (394)
Q Consensus       310 ---~~~~~~--~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~~~v~~l~~sp~~-~l~tg-  378 (394)
                         ......  ...........++++++.+++++..++.+.+|++........+.    ....+..++|+||| +|+++ 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         215 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             eeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence               111111  11112222345699999777777888999999987654333322    24567889999999 65555 


Q ss_pred             eCCCeEEEEeCCC
Q 016134          379 DGAGMLGVWKLLA  391 (394)
Q Consensus       379 s~Dg~I~vWd~~~  391 (394)
                      ..++.|++|+++.
T Consensus       295 ~~~~~v~v~~id~  307 (333)
T d1ri6a_         295 QKSHHISVYEIVG  307 (333)
T ss_dssp             TTTCEEEEEEEET
T ss_pred             CCCCeEEEEEEEC
Confidence            4568999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.5e-14  Score=137.72  Aligned_cols=187  Identities=14%  Similarity=0.010  Sum_probs=131.9

Q ss_pred             CCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc--eeecCCCcEE---EecCCCCcEEEEEEcC
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--AWNIESSAEF---SLDGPVGEVYSMVVAN  223 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--vWd~~~~~~~---~~~~~~~~v~~l~~~~  223 (394)
                      .+.++.|.|||..++ +++..+..|. .+..++|+|||++|++++.|+.  +||+.+++..   .+...           
T Consensus        38 ~~d~g~v~v~D~~t~-~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-----------  104 (432)
T d1qksa2          38 LRDAGQIALIDGSTY-EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-----------  104 (432)
T ss_dssp             ETTTTEEEEEETTTC-CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-----------
T ss_pred             EcCCCEEEEEECCCC-cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-----------
Confidence            345569999999988 8888888774 6999999999999999999998  6999877632   11110           


Q ss_pred             CEEEEEecCCCCCCEEEEEec--CCe-EEEEeCCCeEEEEeCCCCceeEEEcCCC-----------CCcEEEEEc--CC-
Q 016134          224 EMLFAGAQDGHTRPVTCLAVG--RSR-LCSGSMDNTIRVWELDTLEPVMTLNDHT-----------DAPMSLLCW--DQ-  286 (394)
Q Consensus       224 ~~l~~~~~~~h~~~V~~l~~~--~~~-l~sgs~Dg~V~iwd~~~~~~~~~~~~h~-----------~~v~~l~~~--~~-  286 (394)
                              ..|...+.+..|+  +++ +++++.+++|+|||..+++++..+..|.           .....+.++  +. 
T Consensus       105 --------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         105 --------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             --------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             --------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence                    0222333333443  565 4788889999999999999988876543           334556666  44 


Q ss_pred             EEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEe
Q 016134          287 FLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIF  359 (394)
Q Consensus       287 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~  359 (394)
                      ++++...++.|.+||..+.+........... ..  ..+.++|+|++++++...++.+.++|..+.+....+.
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~-~~--~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAER-FL--HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCS-SE--EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEcccC-cc--ccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            4566677899999998876655443322221 22  2345799999666666677899999998877665543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=5.5e-16  Score=140.76  Aligned_cols=267  Identities=7%  Similarity=-0.058  Sum_probs=169.9

Q ss_pred             CCCccccccccccc-ccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC---
Q 016134           74 SPPSYNRLKNNLWV-SSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG---  149 (394)
Q Consensus        74 ~~~~~~~~~~~~~~-~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g---  149 (394)
                      ...++++  |+..+ ++++.|..|++||+++++.......       .....+...+..++ ++|++.+++....+.   
T Consensus        37 ~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~-------~~~~~~~~~~~~v~-~s~dg~~l~~~~~~~~~~  106 (337)
T d1pbyb_          37 MVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLGRIDL-------STPEERVKSLFGAA-LSPDGKTLAIYESPVRLE  106 (337)
T ss_dssp             CCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEEEEEC-------CBTTEEEECTTCEE-ECTTSSEEEEEEEEEEEC
T ss_pred             cEEEECC--CCCEEEEEECCCCeEEEEECCCCcEEEEEec-------CCCcccccceeeEE-EcCCCcEEEEeecCCcce
Confidence            3445555  76665 6778899999999999875421100       01111123344556 888888876555432   


Q ss_pred             -----CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCCCcEEEecCCCCcEEEEEEcCC
Q 016134          150 -----DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIESSAEFSLDGPVGEVYSMVVANE  224 (394)
Q Consensus       150 -----~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~  224 (394)
                           ..+..+.+||..++ +.+..+.. ...+..++|+|+++++++++.+..+||..+++...............+.++
T Consensus       107 ~~~~~~~~~~~~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         107 LTHFEVQPTRVALYDAETL-SRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             SSCEEECCCEEEEEETTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             eeeccccccceeeccccCC-eEEEeccc-cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCC
Confidence                 23458899999887 66666654 456889999999999999998888999999887643222111111111111


Q ss_pred             --EEEEEecCCCCCCEEEEE--ecCCeEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCcEEEEEc--CCEEEEEeCCCcE
Q 016134          225 --MLFAGAQDGHTRPVTCLA--VGRSRLCSGSMDNTIRVWELDTLEPVMT-LNDHTDAPMSLLCW--DQFLLSCSLDHTI  297 (394)
Q Consensus       225 --~l~~~~~~~h~~~V~~l~--~~~~~l~sgs~Dg~V~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~s~Dg~i  297 (394)
                        .+.......+...+....  +....+..+..++.+.+||+.+++.... +..+...+..+.+.  +.+++.+  ++.|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i  262 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccE
Confidence              000000001111111111  1133344556677899999998876543 44566677777777  4555544  5899


Q ss_pred             EEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          298 KVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       298 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      ++||+.+.+.+..+... .....    +.|+|+|+ +|++++.|++|+|||+.+++.+.++..
T Consensus       263 ~v~d~~~~~~~~~~~~~-~~~~~----~~~s~dG~-~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPLP-HSYYS----VNVSTDGS-TVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTTEEEEEEECS-SCCCE----EEECTTSC-EEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEcCC-CCEEE----EEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            99999998887776532 22222    34699999 888899999999999999999888764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=5.7e-14  Score=128.77  Aligned_cols=262  Identities=9%  Similarity=-0.048  Sum_probs=162.1

Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCC
Q 016134           90 GSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEG  163 (394)
Q Consensus        90 ~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~  163 (394)
                      ++.+.++.+||.+++......           ..|   ....++ ++|++.+++....      .++.++.|++||..++
T Consensus        24 ~~~~~~v~v~D~~tg~~~~~~-----------~~g---~~~~~a-~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~   88 (355)
T d2bbkh_          24 FAAVTQQFVIDGEAGRVIGMI-----------DGG---FLPNPV-VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL   88 (355)
T ss_dssp             GCSSEEEEEEETTTTEEEEEE-----------EEC---SSCEEE-ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCcCeEEEEECCCCcEEEEE-----------ECC---CCCceE-EcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence            456788999999998765321           111   122456 9999998865443      2345679999999887


Q ss_pred             ceEEEEecccCC-------CeEEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecC
Q 016134          164 LTMLAKLEGHEK-------AVSGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQD  232 (394)
Q Consensus       164 ~~~~~~l~~h~~-------~V~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~  232 (394)
                       +++..+..+..       ....++|++++++++.++....    +|+..+++............               
T Consensus        89 -~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  152 (355)
T d2bbkh_          89 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---------------  152 (355)
T ss_dssp             -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---------------
T ss_pred             -CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---------------
Confidence             66666554332       3356899999999988765443    69999888764221111110               


Q ss_pred             CCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEEc------CCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCC
Q 016134          233 GHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTLN------DHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATG  304 (394)
Q Consensus       233 ~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~------~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~  304 (394)
                             .........+..+.|+...++.......+..+.      .+...+....+.  +..++.++.++.+.+|++..
T Consensus       153 -------~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         153 -------IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             -------EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred             -------EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCC
Confidence                   001112333444455555444443322222111      122233334444  67888899999999999987


Q ss_pred             CceeeEeec--c----------cCCcceEEEEeeECCCCCcEEEEEeCC---------CeEEEEECCCCceeEEEecCCc
Q 016134          305 RGNLEAAYT--H----------KEDNGVLALGGLNDPDGKPVLICACND---------NTVHLYELPSFMERGRIFSKHE  363 (394)
Q Consensus       305 ~~~~~~~~~--~----------~~~~~~~~~~~~~s~~g~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~  363 (394)
                      ++.......  +          ......+    .+++++..+++.....         ..|.+||..+++.+..+.....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~  301 (355)
T d2bbkh_         226 GDAKFLPAVEALTEAERADGWRPGGWQQV----AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE  301 (355)
T ss_dssp             SSCEECCCEESSCHHHHHTTEEECSSSCE----EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE
T ss_pred             CcEEEEeccCCcccceEeeeeeccceEEE----EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC
Confidence            653221111  0          0111122    3478888443333221         4799999999999888887778


Q ss_pred             EEEEEECCCC---EEEEEeCCCeEEEEeCCCCC
Q 016134          364 VRVIEIGPDK---LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       364 v~~l~~sp~~---~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      +.+++|+|||   +++++..|+.|++||+.+..
T Consensus       302 ~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            9999999998   45677889999999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.54  E-value=3.7e-12  Score=117.39  Aligned_cols=266  Identities=8%  Similarity=-0.058  Sum_probs=164.1

Q ss_pred             ccccccc-----CCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeec------CCC
Q 016134           83 NNLWVSS-----GSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVR------GDE  151 (394)
Q Consensus        83 ~~~~~~s-----~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~------g~~  151 (394)
                      ++.++..     .+.+..+.+||.+++.....-           ..|..   ..+. ++|++.+++.....      +..
T Consensus        31 dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-----------~~~~~---~~~a-~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-----------NGGFL---PNPV-AAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCEEEEEcccccCCCceEEEEECCCCCEEEEE-----------eCCCC---ccEE-EcCCCCEEEEEeecCCccccccc
Confidence            5555432     234556888898888764311           11211   2355 99999999876544      345


Q ss_pred             CCeEEEEEcCCCceEEEEecccCCCe-------EEEEecCCCCEEEEEeCCCc----eeecCCCcEEEecCCCCcEEEEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLEGHEKAV-------SGIALPLRSDKLFSGSRDGT----AWNIESSAEFSLDGPVGEVYSMV  220 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~~h~~~V-------~~l~~s~~~~~l~sgs~Dg~----vWd~~~~~~~~~~~~~~~v~~l~  220 (394)
                      ++.|++||..++ +++..+..+....       ..+.|+++++.++....+..    +|+....+......   ....+.
T Consensus        96 ~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---SPTCYH  171 (373)
T ss_pred             ceEEEEEECCCC-cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---cceeEE
Confidence            678999999987 7777777666544       45788888888776665432    68877765542221   223444


Q ss_pred             EcCC---EEEEEecC------------------------CCCCCEEEEEec-CCeEEEEeCCCeEEEEeCCCCcee--EE
Q 016134          221 VANE---MLFAGAQD------------------------GHTRPVTCLAVG-RSRLCSGSMDNTIRVWELDTLEPV--MT  270 (394)
Q Consensus       221 ~~~~---~l~~~~~~------------------------~h~~~V~~l~~~-~~~l~sgs~Dg~V~iwd~~~~~~~--~~  270 (394)
                      ++++   .+++...+                        ++......+.+. ...++..+.++.+.+|+..+.+..  ..
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence            4443   22222222                        111112223344 345667778999999998876532  22


Q ss_pred             EcCCCCC----------cEEEEEc------------CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeEC
Q 016134          271 LNDHTDA----------PMSLLCW------------DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLND  328 (394)
Q Consensus       271 ~~~h~~~----------v~~l~~~------------~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s  328 (394)
                      +..+...          ...+.++            +..+++...++.+.+||+.+++.+..+....   ...  .+.|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~---~~~--~~a~s  326 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVD--AISVA  326 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC---Cee--EEEEC
Confidence            2211111          1111111            3455667778899999999988777654322   222  33479


Q ss_pred             CCCCcE-EEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCC
Q 016134          329 PDGKPV-LICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPD  372 (394)
Q Consensus       329 ~~g~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~  372 (394)
                      |||+.+ +++++.|++|+|||+.+++.+..+.. ....+.|++.++
T Consensus       327 pDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         327 QDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999854 56889999999999999999999974 566777777654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=7.9e-11  Score=106.04  Aligned_cols=224  Identities=17%  Similarity=0.168  Sum_probs=142.9

Q ss_pred             CCCCCeEEEEEcCCC--ceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc--eeecCCCcEE-EecCCCCcEEEEEEc
Q 016134          149 GDECRFLHSWFCGEG--LTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT--AWNIESSAEF-SLDGPVGEVYSMVVA  222 (394)
Q Consensus       149 g~~~~~i~iWd~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~~-~~~~~~~~v~~l~~~  222 (394)
                      +..++.|++|++.+.  .+.++. ..|.+.|..|+|+|||++|++++. |+.  +|++...... .+..+          
T Consensus        10 ~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~----------   78 (333)
T d1ri6a_          10 SPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE----------   78 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----------
T ss_pred             CCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee----------
Confidence            345569999998644  233333 458899999999999999966554 666  5888765422 11100          


Q ss_pred             CCEEEEEecCCCCCCEEEEEec--CCeEEEEeC-CCeEEEEeCCCCceeE--EEcCCCCCcEEEEEc--CCEEEEEe-CC
Q 016134          223 NEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM-DNTIRVWELDTLEPVM--TLNDHTDAPMSLLCW--DQFLLSCS-LD  294 (394)
Q Consensus       223 ~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~~~~~~--~~~~h~~~v~~l~~~--~~~l~s~s-~D  294 (394)
                               ..+...+..++|+  +++|++++. ++.|.+|+........  ....+...+.++.++  +++++.++ .+
T Consensus        79 ---------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~  149 (333)
T d1ri6a_          79 ---------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ  149 (333)
T ss_dssp             ---------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             ---------cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccc
Confidence                     0223344566776  667777764 7799999887655433  334566777888887  66766666 45


Q ss_pred             CcEEEEEeCCCceeeEeec--ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCce----eEEEec-------C
Q 016134          295 HTIKVWFATGRGNLEAAYT--HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFME----RGRIFS-------K  361 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~-------~  361 (394)
                      ..|.+|+............  .............|++++..++++....+...+++......    ...+..       .
T Consensus       150 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (333)
T d1ri6a_         150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  229 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcc
Confidence            6799999876544332221  11111122223457889885566666778888988764422    112211       2


Q ss_pred             CcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          362 HEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       362 ~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .....+++++++  +++++..++.+.+|++...
T Consensus       230 ~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         230 RWAADIHITPDGRHLYACDRTASLITVFSVSED  262 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence            347788999999  6666778889999988754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=4.9e-12  Score=117.00  Aligned_cols=260  Identities=10%  Similarity=0.014  Sum_probs=157.5

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCee------cCCCCCeEEEEEcCCCc
Q 016134           91 SEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCV------RGDECRFLHSWFCGEGL  164 (394)
Q Consensus        91 s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~------~g~~~~~i~iWd~~~~~  164 (394)
                      +++..+.+||.+++...+..            .++.  ...+. ++|++.+++....      .|..+++|++||..+. 
T Consensus        43 ~g~~~~~~~d~~~~~~~~~~------------~~~~--~~~~a-~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~-  106 (368)
T d1mdah_          43 AGTTENWVSCAGCGVTLGHS------------LGAF--LSLAV-AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-  106 (368)
T ss_dssp             CSSEEEEEEETTTTEEEEEE------------EECT--TCEEE-ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-
T ss_pred             CCcceEEEEeCCCCcEEEEE------------eCCC--CCcce-ECCCCCEEEEEcccCccccccccCCeEEEEECCCC-
Confidence            33444556687777754311            1111  11244 8899988775443      4566789999999887 


Q ss_pred             eEEEEecccCC-------CeEEEEecCCCCEEEEEeC-CCc--eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCC
Q 016134          165 TMLAKLEGHEK-------AVSGIALPLRSDKLFSGSR-DGT--AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGH  234 (394)
Q Consensus       165 ~~~~~l~~h~~-------~V~~l~~s~~~~~l~sgs~-Dg~--vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h  234 (394)
                      +++..+..|..       ....++|+|||++|+.+.. ++.  +||+.+++.........                    
T Consensus       107 ~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~--------------------  166 (368)
T d1mdah_         107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS--------------------  166 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS--------------------
T ss_pred             cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC--------------------
Confidence            66666654432       2346899999999988865 455  69999988764221100                    


Q ss_pred             CCCEEEEEecCCeEEEEeCCCeEEEEeCCCCceeEEE------cCCCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCcee
Q 016134          235 TRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEPVMTL------NDHTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       235 ~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~~~~~------~~h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                      ...+  .......++..+.||++.++++.........      ..+...+..+.+.....+.....+.+.++++......
T Consensus       167 ~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         167 CFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGAT  244 (368)
T ss_dssp             CCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCE
T ss_pred             cceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceE
Confidence            0001  0112456777888999999988654432222      2233344455555222222234566777776554333


Q ss_pred             eEeecc------------cCCcceEEEEeeECCCCCcEEEEEeCC--------CeEEEEECCCCceeEEEecCCcEEEEE
Q 016134          309 EAAYTH------------KEDNGVLALGGLNDPDGKPVLICACND--------NTVHLYELPSFMERGRIFSKHEVRVIE  368 (394)
Q Consensus       309 ~~~~~~------------~~~~~~~~~~~~~s~~g~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~v~~l~  368 (394)
                      ......            ......++    +++++..+++....+        ..|.+||..+++.+..+.....+..++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~a----~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a  320 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMVA----KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII  320 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEE----EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEE
T ss_pred             EEeecccccceeeeeeecCCCceeEE----EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEE
Confidence            221110            01112233    477877444443222        359999999999888877777899999


Q ss_pred             ECCCC---EEEEEeCCCeEEEEeCCCC
Q 016134          369 IGPDK---LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       369 ~sp~~---~l~tgs~Dg~I~vWd~~~~  392 (394)
                      |+|||   +++++..|+.|++||..+.
T Consensus       321 ~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         321 AAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            99998   3567778999999998764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.26  E-value=2.6e-10  Score=103.77  Aligned_cols=254  Identities=11%  Similarity=-0.073  Sum_probs=145.7

Q ss_pred             ccccccccccccc----------CCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCe
Q 016134           77 SYNRLKNNLWVSS----------GSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNC  146 (394)
Q Consensus        77 ~~~~~~~~~~~~s----------~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~  146 (394)
                      +|++  |+..+..          ++.|..|++||.+++.........   .  ............+. +++++.++... 
T Consensus        53 a~Sp--Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~---~--~~~~~~~~~~~~~~-~s~dg~~~~v~-  123 (355)
T d2bbkh_          53 VVAD--DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP---D--APRFLVGTYPWMTS-LTPDGKTLLFY-  123 (355)
T ss_dssp             EECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET---T--CCCCCBSCCGGGEE-ECTTSSEEEEE-
T ss_pred             EEcC--CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecC---C--cceeecCCCCceEE-EecCCCeeEEe-
Confidence            5665  6655543          345789999999988753211000   0  00000011223345 88888887643 


Q ss_pred             ecCCCCCeEEEEEcCCCceEEEEecccCC-------CeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcE
Q 016134          147 VRGDECRFLHSWFCGEGLTMLAKLEGHEK-------AVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEV  216 (394)
Q Consensus       147 ~~g~~~~~i~iWd~~~~~~~~~~l~~h~~-------~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v  216 (394)
                       +...+..+.+|+..++ +.+..+..+..       ....+.++++++.++....+..   +++......          
T Consensus       124 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----------  191 (355)
T d2bbkh_         124 -QFSPAPAVGVVDLEGK-AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----------  191 (355)
T ss_dssp             -ECSSSCEEEEEETTTT-EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----------
T ss_pred             -cCCCCceeeeeecCCC-cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----------
Confidence             3344568999999887 66666655432       2233455555555544333222   122211110          


Q ss_pred             EEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeE--EEcCCC----------CCcEEEE
Q 016134          217 YSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVM--TLNDHT----------DAPMSLL  282 (394)
Q Consensus       217 ~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~--~~~~h~----------~~v~~l~  282 (394)
                                      .+...+....+.  +..++.++.++.+.+|++..++...  ....+.          .....+.
T Consensus       192 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  255 (355)
T d2bbkh_         192 ----------------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  255 (355)
T ss_dssp             ----------------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             ----------------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEE
Confidence                            222223333443  5678888999999999998765321  111111          1122344


Q ss_pred             Ec--CCEEEEEeCC----------CcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc-EEEEEeCCCeEEEEEC
Q 016134          283 CW--DQFLLSCSLD----------HTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP-VLICACNDNTVHLYEL  349 (394)
Q Consensus       283 ~~--~~~l~s~s~D----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-~l~sgs~dg~I~iwd~  349 (394)
                      ++  +..++....+          ..|.+||+.+++.+..+.....   ..  .+.|+|||+. +++++..|++|++||+
T Consensus       256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~---~~--~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---ID--SINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---EC--EEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC---EE--EEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            44  5655554432          4699999998887766653321   22  3346999975 4567788999999999


Q ss_pred             CCCceeEEEec-CCcEEEEEECCC
Q 016134          350 PSFMERGRIFS-KHEVRVIEIGPD  372 (394)
Q Consensus       350 ~~~~~~~~~~~-~~~v~~l~~sp~  372 (394)
                      ++++.+.++.. ......+.+.++
T Consensus       331 ~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         331 ESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CCCCEEEEEeCcCCCccEEEeCCC
Confidence            99999998875 444555555544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=1.9e-09  Score=102.59  Aligned_cols=146  Identities=7%  Similarity=-0.109  Sum_probs=100.0

Q ss_pred             CCCCcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC---
Q 016134           73 KSPPSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG---  149 (394)
Q Consensus        73 ~~~~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g---  149 (394)
                      .-...|.+  ++..+.  ..|+.+.+||+.++......       ......++...|.++. ++|++.+|+......   
T Consensus        19 ~~~~~W~~--d~~~~~--~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~i~~~~-~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          19 LYSLRWIS--DHEYLY--KQENNILVFNAEYGNSSVFL-------ENSTFDEFGHSINDYS-ISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCCCEECS--SSEEEE--ESSSCEEEEETTTCCEEEEE-------CTTTTTTSSSCCCEEE-ECTTSSEEEEEEEEEECS
T ss_pred             ccCCEeCC--CCEEEE--EcCCcEEEEECCCCCEEEEE-------chhhhhhccCccceeE-ECCCCCEEEEEECCccee
Confidence            34566776  665443  35778999999998753100       0113456667788998 999999998654321   


Q ss_pred             --CCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecC---------------
Q 016134          150 --DECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDG---------------  211 (394)
Q Consensus       150 --~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~---------------  211 (394)
                        +..+.+.|||+.++ + +..+..|...+..+.|+|||++||....... +|+..+++...+..               
T Consensus        87 r~s~~~~~~l~d~~~~-~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~  164 (470)
T d2bgra1          87 RHSYTASYDIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV  164 (470)
T ss_dssp             SSCEEEEEEEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred             eeccCceEEEEECCCC-c-ccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCccccccccee
Confidence              33458899999886 3 5668889999999999999999999765544 68888877654321               


Q ss_pred             ----CCCcEEEEEEcCC--EEEEEecC
Q 016134          212 ----PVGEVYSMVVANE--MLFAGAQD  232 (394)
Q Consensus       212 ----~~~~v~~l~~~~~--~l~~~~~~  232 (394)
                          ..+....+.|+|+  .++....+
T Consensus       165 ~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         165 YEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeeecCCccccEECCCCCccceeEec
Confidence                1123345778988  56555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.91  E-value=1.5e-08  Score=94.62  Aligned_cols=284  Identities=12%  Similarity=-0.010  Sum_probs=169.8

Q ss_pred             cccCCCCCcccccccCCCCCCC-----CCCCCCC--cc-----------ccccCCCCccceeeeccccccccccCCCeec
Q 016134           87 VSSGSEDRIPHVRNRENPGYTG-----PKNSSSA--SS-----------TVSDESGDKSTSKKTTLKNVCCHWLLGNCVR  148 (394)
Q Consensus        87 ~~s~s~d~~~~~w~~~~~~~~~-----~~~s~~~--~~-----------~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~  148 (394)
                      .+||+.+..+++|++.++....     +.++...  ..           ...|.-.|........ ..|+++|+..... 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~-gtpDGr~lfV~d~-   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD-GRYDGKYLFINDK-   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET-TEEEEEEEEEEET-
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec-ccCCCCEEEEEcC-
Confidence            5788889999999998765211     0010000  00           0112223334444455 7899999854332 


Q ss_pred             CCCCCeEEEEEcCCCceEEEEec-ccCCCeEEEEecCCCC--EEEEEeCCCc-------------------eeecCCCcE
Q 016134          149 GDECRFLHSWFCGEGLTMLAKLE-GHEKAVSGIALPLRSD--KLFSGSRDGT-------------------AWNIESSAE  206 (394)
Q Consensus       149 g~~~~~i~iWd~~~~~~~~~~l~-~h~~~V~~l~~s~~~~--~l~sgs~Dg~-------------------vWd~~~~~~  206 (394)
                        .+..|.++|+.+. +..+.+. .+...+..++|+|+++  +++..+.+..                   .+|.++.+.
T Consensus        92 --~~~rVavIDl~t~-k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          92 --ANTRVARIRLDIM-KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             --TTTEEEEEETTTT-EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             --CCCEEEEEECCCC-cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence              2338999999887 5555543 5678899999999998  5555554432                   266666665


Q ss_pred             EEecCCCCcEEEEEEcCC--EEEEEecCCCC------------CCEEEEEe--------cCCeEEEEeCCCeEEEEeCCC
Q 016134          207 FSLDGPVGEVYSMVVANE--MLFAGAQDGHT------------RPVTCLAV--------GRSRLCSGSMDNTIRVWELDT  264 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~--~l~~~~~~~h~------------~~V~~l~~--------~~~~l~sgs~Dg~V~iwd~~~  264 (394)
                      .......+....+.++++  .+++.+.+...            ..|....+        +++++.. +.++.+.|++...
T Consensus       169 ~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~  247 (441)
T d1qnia2         169 AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEECSSS
T ss_pred             eEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEcccC
Confidence            432223345667888888  66666655221            12222222        1444443 4567888888777


Q ss_pred             CceeEEEcCCCCCcEEEEEc--CCEE-EEEeCCCcEEEEEeCCCcee--------eEeecccCCcceEEEEeeECCCCCc
Q 016134          265 LEPVMTLNDHTDAPMSLLCW--DQFL-LSCSLDHTIKVWFATGRGNL--------EAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       265 ~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~Dg~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      .+.+..+..... ...+.++  |+++ +++..+++|.+||+.+....        ..+.... ....-.+...|+++|. 
T Consensus       248 ~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~-~~glgplh~~fd~~g~-  324 (441)
T d1qnia2         248 SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP-ELGLGPLHTTFDGRGN-  324 (441)
T ss_dssp             CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC-BCCSCEEEEEECSSSE-
T ss_pred             CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec-ccccCcccceecCCce-
Confidence            778888876544 5667777  7765 45667999999998642210        1111111 1122233446899987 


Q ss_pred             EEEEEeCCCeEEEEECCC---------C-ceeEEEe------cCCcEEEEEECCCC-EEEEEe
Q 016134          334 VLICACNDNTVHLYELPS---------F-MERGRIF------SKHEVRVIEIGPDK-LFFTGD  379 (394)
Q Consensus       334 ~l~sgs~dg~I~iwd~~~---------~-~~~~~~~------~~~~v~~l~~sp~~-~l~tgs  379 (394)
                      .+.+...|..|..|++..         . ..+..+.      |.+.+.+..++||| +|++++
T Consensus       325 ~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         325 AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            788899999999999742         1 1222221      12334555788999 999993

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.90  E-value=2.5e-08  Score=91.41  Aligned_cols=250  Identities=6%  Similarity=-0.049  Sum_probs=128.7

Q ss_pred             cccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCCeEEEEEcCCCceE
Q 016134           87 VSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTM  166 (394)
Q Consensus        87 ~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~  166 (394)
                      +++|+.|.+|++||..++.......     ...............++ ++|++++++....+   ++.|.+||+.+. +.
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~~i~-----~p~~~~~~~g~~p~~~a-~SpDGk~l~va~~~---~~~v~~~d~~~~-~~  158 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIADIE-----LPDAPRFSVGPRVHIIG-NCASSACLLFFLFG---SSAAAGLSVPGA-SD  158 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEEEEE-----ETTSCSCCBSCCTTSEE-ECTTSSCEEEEECS---SSCEEEEEETTT-EE
T ss_pred             ccccccCCeEEEEECCCCcEeeeec-----CCccceecccCCccceE-ECCCCCEEEEEeCC---CCeEEEEECCCC-cE
Confidence            3456779999999999877532110     00000000001122455 99999998754332   358999999887 77


Q ss_pred             EEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEE-EecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEe
Q 016134          167 LAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEF-SLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAV  243 (394)
Q Consensus       167 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~  243 (394)
                      +..+..+.....   +......++..+.|+.+  |++...... ......                ....+...+..+.+
T Consensus       159 ~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  219 (368)
T d1mdah_         159 DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ----------------CTGAQNCSSQAAQA  219 (368)
T ss_dssp             EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC----------------SCTTSCBCSCCEEE
T ss_pred             eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc----------------cccccccceeeccc
Confidence            777665543321   11122344444555552  333222211 000000                00012222222333


Q ss_pred             cCCeEEEEeCCCeEEEEeCCCCceeEEEc--C------------CCCCcEEEEEcCCEEEEEeCC---------CcEEEE
Q 016134          244 GRSRLCSGSMDNTIRVWELDTLEPVMTLN--D------------HTDAPMSLLCWDQFLLSCSLD---------HTIKVW  300 (394)
Q Consensus       244 ~~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~------------h~~~v~~l~~~~~~l~s~s~D---------g~i~vw  300 (394)
                      .....+....++.+.++++...+......  .            .......+...+..++....+         ..|.+|
T Consensus       220 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~  299 (368)
T d1mdah_         220 NYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             ccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence            32222222334455555554433222111  0            111223333335554443221         358999


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCc-EEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEEC
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP-VLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIG  370 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~s  370 (394)
                      |..+++.+..+....     ....+.|+|||+. +++++..|+.|++||..+++.+..+......+.|++-
T Consensus       300 D~~t~~~~~~~~~~~-----~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         300 TASVGQTSGPISNGH-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             ESSSCCEEECCEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             ECCCCcEeEEecCCC-----ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEe
Confidence            999887776654322     1223346999975 4577788999999999999999888765555666553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=7.6e-08  Score=91.15  Aligned_cols=102  Identities=9%  Similarity=-0.158  Sum_probs=70.4

Q ss_pred             CCCcccccccccccccCCC---------CCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCC
Q 016134           74 SPPSYNRLKNNLWVSSGSE---------DRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLG  144 (394)
Q Consensus        74 ~~~~~~~~~~~~~~~s~s~---------d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~  144 (394)
                      ...++++  |+.+|+.+++         +..+.|||++++....             ..++...+..+. |+|++.++|-
T Consensus        65 ~~~~~Sp--Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-------------l~~~~~~~~~~~-~SPDG~~ia~  128 (470)
T d2bgra1          65 NDYSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------------EERIPNNTQWVT-WSPVGHKLAY  128 (470)
T ss_dssp             CEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------SSCCCTTEEEEE-ECSSTTCEEE
T ss_pred             ceeEECC--CCCEEEEEECCcceeeeccCceEEEEECCCCcccc-------------cccCCccccccc-cccCcceeeE
Confidence            3445666  8888887765         3456799999887643             344555677777 9999999986


Q ss_pred             CeecCCCCCeEEEEEcCCCceEEEEecc------------------cCCCeEEEEecCCCCEEEEEeCCCc
Q 016134          145 NCVRGDECRFLHSWFCGEGLTMLAKLEG------------------HEKAVSGIALPLRSDKLFSGSRDGT  197 (394)
Q Consensus       145 ~~~~g~~~~~i~iWd~~~~~~~~~~l~~------------------h~~~V~~l~~s~~~~~l~sgs~Dg~  197 (394)
                      . .    +..+.+|+..++. ..+....                  +.+....+.|+|||++|+....|..
T Consensus       129 ~-~----~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         129 V-W----NNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             E-E----TTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             e-e----cccceEEECCCCc-eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence            3 2    2379999988773 3333222                  2234566889999999999987655

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.77  E-value=5.9e-07  Score=83.59  Aligned_cols=232  Identities=11%  Similarity=0.023  Sum_probs=133.1

Q ss_pred             ecCCCCCeEEEEEcCCCceEEEEec------------------------------ccCCCeEEEEecCCCCEEEEEeCCC
Q 016134          147 VRGDECRFLHSWFCGEGLTMLAKLE------------------------------GHEKAVSGIALPLRSDKLFSGSRDG  196 (394)
Q Consensus       147 ~~g~~~~~i~iWd~~~~~~~~~~l~------------------------------~h~~~V~~l~~s~~~~~l~sgs~Dg  196 (394)
                      .+|+.++.|+||++.+. +.++++.                              .|.-.+....+.|||++|+......
T Consensus        15 ~Sgg~sG~V~V~dlpS~-r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          15 WSGGHQGEVRVLGVPSM-RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EECBTTCCEEEEEETTT-EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeCCCCCcEEEEeCCCC-cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            35555668888888766 4444431                              1334455566678999998776555


Q ss_pred             c---eeecCCCcEEEe--cCCCCcEEEEEEcCC----EEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCce
Q 016134          197 T---AWNIESSAEFSL--DGPVGEVYSMVVANE----MLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEP  267 (394)
Q Consensus       197 ~---vWd~~~~~~~~~--~~~~~~v~~l~~~~~----~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~  267 (394)
                      .   ++|+++++....  .........++|+++    +++....+  .-++   ...+..+-.-.....+..+|..+.+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~--~v~~---~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF--VIPQ---PNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS--CEES---SCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC--cccc---cCcccccccccccceEEeecCcccee
Confidence            4   699999987643  234556777888765    22222111  0000   00000000000002345567776666


Q ss_pred             eEEEcCCCCCcEEEEEc--CCEEEEEeC-----------------------------------------CCcEEEEEeCC
Q 016134          268 VMTLNDHTDAPMSLLCW--DQFLLSCSL-----------------------------------------DHTIKVWFATG  304 (394)
Q Consensus       268 ~~~~~~h~~~v~~l~~~--~~~l~s~s~-----------------------------------------Dg~i~vwd~~~  304 (394)
                      ..++... ..+..+.++  ++++++.+.                                         ++.+.+++...
T Consensus       169 ~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         169 AWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             eEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            6555432 234444444  555555443                                         34445555444


Q ss_pred             CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee--------EEEe----cCCcEEEEEECCC
Q 016134          305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER--------GRIF----SKHEVRVIEIGPD  372 (394)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~--------~~~~----~~~~v~~l~~sp~  372 (394)
                      .+.+..+.....+.. +.    ++|||+++++++..+++|.|||+.+....        ..+.    ..-.....+|.++
T Consensus       248 ~~v~~~IPvgksPhG-v~----vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~  322 (441)
T d1qnia2         248 SEFTRYIPVPKNPHG-LN----TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR  322 (441)
T ss_dssp             CSSEEEECCBSSCCC-EE----ECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred             CceEEEEeCCCCccC-ce----ECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC
Confidence            455555555544433 22    49999977788899999999998753211        0111    1223556789999


Q ss_pred             C-EEEEEeCCCeEEEEeCC
Q 016134          373 K-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       373 ~-~l~tgs~Dg~I~vWd~~  390 (394)
                      | .+.+...|.+|..|++.
T Consensus       323 g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         323 GNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SEEEEEETTTTEEEEEEHH
T ss_pred             ceEEEcccccceEEEeccc
Confidence            9 77788899999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.68  E-value=1.1e-05  Score=71.26  Aligned_cols=208  Identities=10%  Similarity=0.010  Sum_probs=125.7

Q ss_pred             eEEEEecccCCCeEEEEecCCCCEEEEEeCCCceeecCC-CcEEEecCCCCcEEEEEEcCC-EEEEEecC----------
Q 016134          165 TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTAWNIES-SAEFSLDGPVGEVYSMVVANE-MLFAGAQD----------  232 (394)
Q Consensus       165 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~-~~~~~~~~~~~~v~~l~~~~~-~l~~~~~~----------  232 (394)
                      +.+..+... ..+..++++|||+++++...+++||.+.. ++...+......+..++|.++ .++++...          
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            334444322 24778899999988888888888876653 444455556677888888887 44333322          


Q ss_pred             ------------CCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcC----------CCCCcEEEEEcCC-E
Q 016134          233 ------------GHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLND----------HTDAPMSLLCWDQ-F  287 (394)
Q Consensus       233 ------------~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~----------h~~~v~~l~~~~~-~  287 (394)
                                  ........+.+.  ++++++-+.++.+..+|...+.....+..          ....+..+.+.+. +
T Consensus        98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l  177 (302)
T d2p4oa1          98 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL  177 (302)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred             ccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCce
Confidence                        123345666665  55666667788888888877653322211          1123466677754 4


Q ss_pred             EEEEeCCCcEEEEEeCCCceeeEeec--ccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CC
Q 016134          288 LLSCSLDHTIKVWFATGRGNLEAAYT--HKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KH  362 (394)
Q Consensus       288 l~s~s~Dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~  362 (394)
                      +++.+..+.|..+++...........  .......++    ++++|. ++++...++.|..++... +.......   -.
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia----~d~dG~-l~va~~~~~~V~~i~p~G-~~~~~~~~~~~~~  251 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFA----FDVEGN-LYGATHIYNSVVRIAPDR-STTIIAQAEQGVI  251 (302)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEE----EBTTCC-EEEECBTTCCEEEECTTC-CEEEEECGGGTCT
T ss_pred             eeecCCCCeEEeccccccccccccccccCCCCCcceE----ECCCCC-EEEEEcCCCcEEEECCCC-CEEEEEecCCCCC
Confidence            55556788888888765443322211  111122233    589998 777777889999997764 33222221   34


Q ss_pred             cEEEEEE---CCCC-EEEEEe
Q 016134          363 EVRVIEI---GPDK-LFFTGD  379 (394)
Q Consensus       363 ~v~~l~~---sp~~-~l~tgs  379 (394)
                      ..++++|   .+|+ .|+.++
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEE
T ss_pred             CceEEEEcCCCCCCCEEEEEC
Confidence            5899999   6676 454443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=6e-06  Score=75.32  Aligned_cols=156  Identities=12%  Similarity=0.101  Sum_probs=91.9

Q ss_pred             CEEEEEec--CCeEEEEeC-CCeEEEEeCCC-Ccee--EEEc--CCCCCcEEEEEc--CCEEEEEe-CCCcEEEEEeCCC
Q 016134          237 PVTCLAVG--RSRLCSGSM-DNTIRVWELDT-LEPV--MTLN--DHTDAPMSLLCW--DQFLLSCS-LDHTIKVWFATGR  305 (394)
Q Consensus       237 ~V~~l~~~--~~~l~sgs~-Dg~V~iwd~~~-~~~~--~~~~--~h~~~v~~l~~~--~~~l~s~s-~Dg~i~vwd~~~~  305 (394)
                      .+.++.|+  +++++++.. ...|.+|+... ++..  ..+.  ........+.|+  ++++.+.. .+++|.+|++...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            46788887  676666654 45788887654 3221  2221  234567889998  66665544 5889999998765


Q ss_pred             ceeeEee--cc-------------cCCcceEEEEeeECCCCCcEEEEEeCC-----CeEEEEECCCCceeEEEe------
Q 016134          306 GNLEAAY--TH-------------KEDNGVLALGGLNDPDGKPVLICACND-----NTVHLYELPSFMERGRIF------  359 (394)
Q Consensus       306 ~~~~~~~--~~-------------~~~~~~~~~~~~~s~~g~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~------  359 (394)
                      +......  ..             ............++|+|+.++++...+     ..|..|++.....+....      
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            4322211  10             001112233345799999444443222     237788876543322211      


Q ss_pred             -cCCcEEEEEECC-CC--EEEEEeCCCeEEEEeCCCC
Q 016134          360 -SKHEVRVIEIGP-DK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       360 -~~~~v~~l~~sp-~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                       .......++++| +|  ++++...++.|.+|+++.+
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             134567899998 67  4455567899999987643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=0.00011  Score=63.74  Aligned_cols=152  Identities=11%  Similarity=0.092  Sum_probs=101.4

Q ss_pred             CCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEE--cCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCcee
Q 016134          235 TRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTL--NDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       235 ~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                      ......++++  +.++++....+.+.+++.. ++.+.++  ..+......+++.  +.++++....+.|++||.. ++.+
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~  190 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYL  190 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Ccee
Confidence            3455666665  5666666666778888854 5666665  3355667778877  5677777778899999974 4445


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeC-CCeEEEEECCCCceeEEEec---CCcEEEEEECCCCEEEEEeCCCeE
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACN-DNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDKLFFTGDGAGML  384 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~~l~tgs~Dg~I  384 (394)
                      ..+-.........  .++++++|+ ++++-.. +..|.+|+. +++.+..+..   ......|++.|+|.|+.++.+..|
T Consensus       191 ~~~g~~g~~~~P~--giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v  266 (279)
T d1q7fa_         191 RQIGGEGITNYPI--GVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRL  266 (279)
T ss_dssp             EEESCTTTSCSEE--EEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEE
T ss_pred             eeecccccccCCc--ccccccCCe-EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeE
Confidence            4443211112222  334689998 7776543 457999984 5776666644   335899999999966666789999


Q ss_pred             EEEeCCCC
Q 016134          385 GVWKLLAK  392 (394)
Q Consensus       385 ~vWd~~~~  392 (394)
                      ++|+...-
T Consensus       267 ~~fr~~~~  274 (279)
T d1q7fa_         267 YIYRYVQL  274 (279)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeeee
Confidence            99998653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=5.3e-05  Score=64.96  Aligned_cols=212  Identities=8%  Similarity=-0.074  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-----eeecCCCcEEEecCCCCcEEEEEEcCC--EE
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-----AWNIESSAEFSLDGPVGEVYSMVVANE--ML  226 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----vWd~~~~~~~~~~~~~~~v~~l~~~~~--~l  226 (394)
                      .|.|-|.... . .+.+..+...+..-+|||||++||-...+..     +.+...+....+..+........|+++  .+
T Consensus        20 ~l~i~d~dG~-~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGY-N-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSC-S-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCC-C-cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCee
Confidence            4666676533 3 2333445777889999999999997765554     356667776677777788888899988  44


Q ss_pred             EEEecC--------------------CCCCCEEEEEec--CC-eEEEEeCCC--eEEEEeCCCCceeEEEcCCCCCcEEE
Q 016134          227 FAGAQD--------------------GHTRPVTCLAVG--RS-RLCSGSMDN--TIRVWELDTLEPVMTLNDHTDAPMSL  281 (394)
Q Consensus       227 ~~~~~~--------------------~h~~~V~~l~~~--~~-~l~sgs~Dg--~V~iwd~~~~~~~~~~~~h~~~v~~l  281 (394)
                      +.....                    ..........+.  +. .+++...++  .|.+.++..... ..+..+.......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~  176 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  176 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccc
Confidence            433322                    111122222222  23 344444555  445556555433 3333344555566


Q ss_pred             EEc--CCEEEEEe-CCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeC--CCeEEEEECCCCceeE
Q 016134          282 LCW--DQFLLSCS-LDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACN--DNTVHLYELPSFMERG  356 (394)
Q Consensus       282 ~~~--~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~--dg~I~iwd~~~~~~~~  356 (394)
                      .++  ++.++..+ ..+...+|...................    ...|+|||+.++.+...  ...|+++++.......
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDE----TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCE----EEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             ccccccceeEEEeecCCceeeeEeecccccceEeecCcccc----ceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            666  56655554 445555554443332233332222222    23479999955554433  3468889998765543


Q ss_pred             EEecCCcEEEEEECCC
Q 016134          357 RIFSKHEVRVIEIGPD  372 (394)
Q Consensus       357 ~~~~~~~v~~l~~sp~  372 (394)
                      .......+...+|+|-
T Consensus       253 lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         253 LPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CCCSSSEEEEEEECCC
T ss_pred             EeCCCCcEEeEEeCCC
Confidence            3333667888999983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=7.6e-05  Score=64.17  Aligned_cols=226  Identities=9%  Similarity=0.009  Sum_probs=125.0

Q ss_pred             eeecccccccc-ccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcE
Q 016134          130 KKTTLKNVCCH-WLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAE  206 (394)
Q Consensus       130 ~~~~~~~~~~~-~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~  206 (394)
                      ..++ ..+.+. |++..    ...+.|..++..........+.+ ......|+++++++++++....+.+  ++-.+...
T Consensus        17 ~~va-vd~dG~i~v~~~----~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          17 SGVA-VDSAGNVYVTSE----GMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             EEEE-ECTTCCEEEEEC----SSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CEEE-EcCCCCEEEEEc----CCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            4555 555555 44432    22336666666544333333332 2345788999999877776555443  22222222


Q ss_pred             EEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc
Q 016134          207 FSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW  284 (394)
Q Consensus       207 ~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~  284 (394)
                      +...                      .......+++++  ++++++-..+..+.+++............-......+++.
T Consensus        91 ~~~~----------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          91 VLPF----------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             ECCC----------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred             eeee----------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence            2111                      112345666665  4555555556667777765433222111223445677776


Q ss_pred             --CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--
Q 016134          285 --DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--  360 (394)
Q Consensus       285 --~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--  360 (394)
                        +.++++...++.|..+|....... .+. ........  .++++++|. ++++....+.|..++..... ...+..  
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~p~--gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~-~~~~~~~~  222 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQV-VLP-FTDITAPW--GIAVDEAGT-VYVTEHNTNQVVKLLAGSTT-STVLPFTG  222 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEE-ECC-CSSCCSEE--EEEECTTCC-EEEEETTTTEEEEECTTCSC-CEECCCCS
T ss_pred             CCCCEeeeccccccccccccccceee-eee-ccccCCCc--cceeeeeee-eeeeecCCCEEEEEeCCCCe-EEEEccCC
Confidence              677777777888999987644322 221 11112222  234588988 88888778888888765432 222222  


Q ss_pred             CCcEEEEEECCCC-EEEEEeCCCeEEEEeC
Q 016134          361 KHEVRVIEIGPDK-LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       361 ~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~  389 (394)
                      -.....|++++++ ++++-..+++|+.++.
T Consensus       223 ~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            3467899999999 6666667777776654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.31  E-value=0.00043  Score=61.19  Aligned_cols=219  Identities=11%  Similarity=0.050  Sum_probs=122.6

Q ss_pred             CCeEEEEEcCCCceEEEEec---ccCCCeEEEEecCCCCEEEEEeCCCce--eecCCCcEEEecC-CCC----cEEEEEE
Q 016134          152 CRFLHSWFCGEGLTMLAKLE---GHEKAVSGIALPLRSDKLFSGSRDGTA--WNIESSAEFSLDG-PVG----EVYSMVV  221 (394)
Q Consensus       152 ~~~i~iWd~~~~~~~~~~l~---~h~~~V~~l~~s~~~~~l~sgs~Dg~v--Wd~~~~~~~~~~~-~~~----~v~~l~~  221 (394)
                      .+.|..||..++........   .-...-..|+|.++++.|+.+.....+  .+.+......... ..+    ....+++
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            45788888877633222211   112345789999999988887665543  4544443322111 110    1233344


Q ss_pred             cCCEEEEEecCCCCCCEEEEEecCCeEEEEe---------------CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--
Q 016134          222 ANEMLFAGAQDGHTRPVTCLAVGRSRLCSGS---------------MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--  284 (394)
Q Consensus       222 ~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs---------------~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--  284 (394)
                      .++                    +++.++-.               .+|.|..++.. ++...... .......+++.  
T Consensus       125 d~~--------------------G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d  182 (314)
T d1pjxa_         125 DYE--------------------GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHM  182 (314)
T ss_dssp             CTT--------------------SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEEC
T ss_pred             CCC--------------------CCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-CcceeeeeEECCC
Confidence            333                    22222211               12344444433 33322222 22234566665  


Q ss_pred             CC-----EEEEEeCCCcEEEEEeCCCceeeEee---cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 016134          285 DQ-----FLLSCSLDHTIKVWFATGRGNLEAAY---THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERG  356 (394)
Q Consensus       285 ~~-----~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~  356 (394)
                      ++     ++++-+..+.|..||+.....+....   ..........-.++++.+|+ +.++....+.|.+||...+..+.
T Consensus       183 ~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~  261 (314)
T d1pjxa_         183 NDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKM  261 (314)
T ss_dssp             TTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSE
T ss_pred             CCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEEEE
Confidence            22     44455677889999876544433211   11111111111223588998 77777778999999988877666


Q ss_pred             EEec-CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCCC
Q 016134          357 RIFS-KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       357 ~~~~-~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .+.. ...+++++|.|++  +++|.+.++.|...++..++
T Consensus       262 ~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         262 RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            6655 4568999999998  67777888999888877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.16  E-value=0.0016  Score=57.33  Aligned_cols=221  Identities=6%  Similarity=-0.060  Sum_probs=118.2

Q ss_pred             eeeccccccccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc----eeec--CC
Q 016134          130 KKTTLKNVCCHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT----AWNI--ES  203 (394)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~----vWd~--~~  203 (394)
                      +.+. |.+.+....+..    ..+.|+.|+..++ +....+.........|+++++|+++++...+..    ++.+  ..
T Consensus        43 EG~~-~D~~G~Ly~~D~----~~g~I~ri~p~g~-~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          43 EGLN-FDRQGQLFLLDV----FEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             EEEE-ECTTSCEEEEET----TTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             EeCE-ECCCCCEEEEEC----CCCEEEEEECCCC-eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3444 555554333222    2337888887665 344444455667899999999998877654322    3322  22


Q ss_pred             CcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEEeC------CCeEEEEeCCCCceeEEEcCCC
Q 016134          204 SAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSGSM------DNTIRVWELDTLEPVMTLNDHT  275 (394)
Q Consensus       204 ~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sgs~------Dg~V~iwd~~~~~~~~~~~~h~  275 (394)
                      ..........                   .-......++++  +++.++-..      .+.+..++.... .+..+...-
T Consensus       117 ~~~~~~~~~~-------------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~  176 (319)
T d2dg1a1         117 DNLQDIIEDL-------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNI  176 (319)
T ss_dssp             CSCEEEECSS-------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEE
T ss_pred             ceeeeeccCC-------------------CcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeecc
Confidence            2222211110                   111234445554  333333211      123455554432 233222223


Q ss_pred             CCcEEEEEc--CCEE-EEEeCCCcEEEEEeCCCceeeE-ee---cccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEE
Q 016134          276 DAPMSLLCW--DQFL-LSCSLDHTIKVWFATGRGNLEA-AY---THKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYE  348 (394)
Q Consensus       276 ~~v~~l~~~--~~~l-~s~s~Dg~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd  348 (394)
                      .....++|+  ++.| ++-+..++|..||+........ ..   ..........--++++++|. +.++....+.|.+||
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEEC
Confidence            345778887  5555 5556678999999865422111 11   11110000111223588998 778778889999999


Q ss_pred             CCCCceeEEEecC-------CcEEEEEECCCC-EEEEE
Q 016134          349 LPSFMERGRIFSK-------HEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       349 ~~~~~~~~~~~~~-------~~v~~l~~sp~~-~l~tg  378 (394)
                      . +++.+..+...       ..+++++|.++. .+++.
T Consensus       256 p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             T-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             C-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            5 68887777642       247899999887 44443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=0.00051  Score=58.71  Aligned_cols=192  Identities=13%  Similarity=0.071  Sum_probs=106.9

Q ss_pred             CCeEEEEecCCCCEEEEEe-CCCceeecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--CCeEEEE
Q 016134          175 KAVSGIALPLRSDKLFSGS-RDGTAWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--RSRLCSG  251 (394)
Q Consensus       175 ~~V~~l~~s~~~~~l~sgs-~Dg~vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--~~~l~sg  251 (394)
                      ..-.+|+++++|+..++.. ..+.+..+..+........                  ..+ ......++++  ++++++.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~------------------~~~-~~~p~gvav~~~g~i~v~d   74 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------------------FNG-LYQPQGLAVDGAGTVYVTD   74 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC------------------CCS-CCSCCCEEECTTCCEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec------------------cCC-ccCceEEEEcCCCCEEEee
Confidence            3458999999999776654 3344433322222110000                  001 1122344554  5566666


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECC
Q 016134          252 SMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDP  329 (394)
Q Consensus       252 s~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~  329 (394)
                      ...+.+++++..+...+..+. ....+..+++.  ++++++-.....+..++...................++    +++
T Consensus        75 ~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~----~~~  149 (260)
T d1rwia_          75 FNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA----VDN  149 (260)
T ss_dssp             TTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE----ECT
T ss_pred             eeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceee----ecC
Confidence            666666666655544443332 23456788886  56665555556666666543222111111111122233    478


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEEE-ecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCC
Q 016134          330 DGKPVLICACNDNTVHLYELPSFMERGRI-FSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       330 ~g~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~  391 (394)
                      ++. ++++...++.|..++.......... ........|++.+++ ++++....+.|..++...
T Consensus       150 ~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         150 SGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             TCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             CCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            888 7888888889999998765433322 224557899999999 777777778888776543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=0.0048  Score=53.54  Aligned_cols=202  Identities=13%  Similarity=0.052  Sum_probs=116.3

Q ss_pred             CeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          153 RFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       153 ~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      +.|..||..++...+..   ....+.++++.+++.++++ +.++. ++|.++++...+......                
T Consensus        40 ~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~~~~~----------------   99 (295)
T d2ghsa1          40 RELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAELESD----------------   99 (295)
T ss_dssp             TEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSTT----------------
T ss_pred             CEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeCccEEeecccceeeEEeeeecC----------------
Confidence            37888998887433322   2457889999988877765 45665 588888876543221110                


Q ss_pred             CCCCCCEEEEEec--CCeEEEEe----CCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEe
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGS----MDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFA  302 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs----~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~  302 (394)
                       .....++.+.++  +++.++..    ..+.-.+|.+..++....+.. ......+.++  ++ ++++-+..+.|..+++
T Consensus       100 -~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1         100 -LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             -CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             -CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeee
Confidence             111234444444  33322221    122345566655654444332 2345677777  44 4556666788988887


Q ss_pred             CCCce-----eeEeeccc-CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEEC-CCC-
Q 016134          303 TGRGN-----LEAAYTHK-EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIG-PDK-  373 (394)
Q Consensus       303 ~~~~~-----~~~~~~~~-~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~s-p~~-  373 (394)
                      .....     ...+.... ......  ..+.+.+|. +.++.-..+.|..||. +++.+..+.. ...+++++|- +|. 
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pd--G~~vD~~Gn-lWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMD--GSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEE--EEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             cccccccccceEEEeccCccccccc--ceEEcCCCC-EEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            53211     11111111 111122  223588998 6666666789999994 6788887776 3569999996 565 


Q ss_pred             -EEEEEeC
Q 016134          374 -LFFTGDG  380 (394)
Q Consensus       374 -~l~tgs~  380 (394)
                       +++|...
T Consensus       254 ~LyvTta~  261 (295)
T d2ghsa1         254 RLLVTSAR  261 (295)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEECC
Confidence             6666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.0076  Score=50.69  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=40.9

Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEE--CCCCceeEEEecCCcEEEEEECCCC-EEE-EEeC--CCeEEEEeCCCC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYE--LPSFMERGRIFSKHEVRVIEIGPDK-LFF-TGDG--AGMLGVWKLLAK  392 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd--~~~~~~~~~~~~~~~v~~l~~sp~~-~l~-tgs~--Dg~I~vWd~~~~  392 (394)
                      ...++|+++.++.+....+...+|.  ...+.. ..+..........|+||| .|+ +...  ...|.+++++..
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            3457999995555555555555554  444332 233335567788999999 554 3332  346778887654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.75  E-value=0.0091  Score=51.09  Aligned_cols=173  Identities=9%  Similarity=0.105  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCceEEEEe-cccCCCeEEEEecCCCCEEEEEeCCCceeecCC-CcEEEecCCCCcEEEEEEcCCEEEEEec
Q 016134          154 FLHSWFCGEGLTMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDGTAWNIES-SAEFSLDGPVGEVYSMVVANEMLFAGAQ  231 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~vWd~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~~~  231 (394)
                      .|.+++...  +....+ .........+++.++++++++....+.++-+.. ++.+..                   -..
T Consensus        94 ~i~~~~~~g--~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~-------------------~g~  152 (279)
T d1q7fa_          94 QIQIYNQYG--QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHK-------------------FGC  152 (279)
T ss_dssp             EEEEECTTS--CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE-------------------EEC
T ss_pred             ccccccccc--cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeec-------------------ccc
Confidence            566666543  334444 334566788999999887777665554432221 222111                   012


Q ss_pred             CCCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEc--CCCCCcEEEEEc--CCEEEEEeC-CCcEEEEEeCC
Q 016134          232 DGHTRPVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLN--DHTDAPMSLLCW--DQFLLSCSL-DHTIKVWFATG  304 (394)
Q Consensus       232 ~~h~~~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~s~s~-Dg~i~vwd~~~  304 (394)
                      ..+......++++  ++++++....+.|++||.. ++.+.++.  +.......|+++  ++++++-.. +..|.+|+. +
T Consensus       153 ~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~  230 (279)
T d1q7fa_         153 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-D  230 (279)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred             cccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-C
Confidence            2455667777776  5667777788999999975 67777773  345567888887  676666443 456999984 4


Q ss_pred             CceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCc
Q 016134          305 RGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFM  353 (394)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~  353 (394)
                      ++.+..+...........  ++..++|. +++ +..+..|++|......
T Consensus       231 G~~~~~~~~~~~~~~p~~--vav~~dG~-l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         231 GQLISALESKVKHAQCFD--VALMDDGS-VVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SCEEEEEEESSCCSCEEE--EEEETTTE-EEE-EETTTEEEEEECSCCC
T ss_pred             CCEEEEEeCCCCCCCEeE--EEEeCCCc-EEE-EeCCCeEEEEEeeeec
Confidence            665555543322222232  23578986 555 4578999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.50  E-value=0.0097  Score=51.53  Aligned_cols=151  Identities=10%  Similarity=-0.058  Sum_probs=101.9

Q ss_pred             CEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCCCcEEEEEeCCCce-eeEe
Q 016134          237 PVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLDHTIKVWFATGRGN-LEAA  311 (394)
Q Consensus       237 ~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~Dg~i~vwd~~~~~~-~~~~  311 (394)
                      .+..++++  ++++++...+++|..||... + ...+......+..+++.  ++++++...++.+..++...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            46777886  67888888899999998653 3 23344456778999998  78888888888888888754332 2222


Q ss_pred             ecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-----------CCcEEEEEECCCCEEEEEeC
Q 016134          312 YTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-----------KHEVRVIEIGPDKLFFTGDG  380 (394)
Q Consensus       312 ~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----------~~~v~~l~~sp~~~l~tgs~  380 (394)
                      ..........  ...+.+++. ++++.+.++.+..++...+........           ......+.+..+.++++.+.
T Consensus       107 ~~~~~~~~~n--~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         107 LTLPDAIFLN--GITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             EECTTCSCEE--EEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             cccCCccccc--eeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence            2222222222  234588887 888888889999999887754433322           12366777765557778888


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      .+.|..+++...
T Consensus       184 ~~~i~~~~~~~~  195 (302)
T d2p4oa1         184 KMLLLRIPVDST  195 (302)
T ss_dssp             TTEEEEEEBCTT
T ss_pred             CCeEEecccccc
Confidence            888888887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.42  E-value=0.012  Score=51.37  Aligned_cols=153  Identities=13%  Similarity=0.021  Sum_probs=90.1

Q ss_pred             CEEEEEec--CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeCC----CcEEEEEeCCCcee
Q 016134          237 PVTCLAVG--RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSLD----HTIKVWFATGRGNL  308 (394)
Q Consensus       237 ~V~~l~~~--~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~D----g~i~vwd~~~~~~~  308 (394)
                      .+..++|+  ++++++-...+.|..||..+.+....+.........+++.  +.++++...+    +.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            44677886  6777777788999999998777666655556677889887  5666554332    23444443333222


Q ss_pred             eEeecccCCcceEEEEeeECCCCCcEEEEEeC------CCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeC
Q 016134          309 EAAYTHKEDNGVLALGGLNDPDGKPVLICACN------DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDG  380 (394)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~  380 (394)
                      .............  ...++++|. +.++...      .+.+..++............-...+.++|+|++  ++++-+.
T Consensus       121 ~~~~~~~~~~~~n--d~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         121 DIIEDLSTAYCID--DMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             EEECSSSSCCCEE--EEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeccCCCcccCCc--ceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            2222111112222  234689998 6665422      123555554433222222234457889999998  4566667


Q ss_pred             CCeEEEEeCCCC
Q 016134          381 AGMLGVWKLLAK  392 (394)
Q Consensus       381 Dg~I~vWd~~~~  392 (394)
                      .+.|..|++...
T Consensus       198 ~~~I~~~d~~~~  209 (319)
T d2dg1a1         198 ANRLHRIALEDD  209 (319)
T ss_dssp             GTEEEEEEECTT
T ss_pred             CCceEEEEEcCC
Confidence            889999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.36  E-value=0.0081  Score=53.74  Aligned_cols=69  Identities=12%  Similarity=0.083  Sum_probs=47.9

Q ss_pred             EeeECCCCCcEEEEEeCCCeEEEEECCCCceeE---EEec---CCcEEEEEECCCC--EEEEEeCCCeEEEEeCCCC
Q 016134          324 GGLNDPDGKPVLICACNDNTVHLYELPSFMERG---RIFS---KHEVRVIEIGPDK--LFFTGDGAGMLGVWKLLAK  392 (394)
Q Consensus       324 ~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~---~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~~~  392 (394)
                      .+.|+|+|+.++++......|.+|+......+.   ....   ....+.++|+|++  .+++.-.+++|.+|+++.+
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            445799999555555556789999876443222   2221   4568999999999  4466667889999998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.041  Score=50.74  Aligned_cols=119  Identities=7%  Similarity=-0.097  Sum_probs=66.5

Q ss_pred             CcccccccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecC-----C
Q 016134           76 PSYNRLKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRG-----D  150 (394)
Q Consensus        76 ~~~~~~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g-----~  150 (394)
                      ..|.+  ++.. +.-..|+.+.+||++++.......         -..-....+.... ++|++.+++-.....     +
T Consensus        22 ~~W~~--~~~~-~~~~~~g~i~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~-~SpD~~~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          22 AKWIS--DTEF-IYREQKGTVRLWNVETNTSTVLIE---------GKKIESLRAIRYE-ISPDREYALFSYNVEPIYQHS   88 (465)
T ss_dssp             CCBSS--SSCB-CCCCSSSCEEEBCGGGCCCEEEEC---------TTTTTTTTCSEEE-ECTTSSEEEEEESCCCCSSSC
T ss_pred             CEEeC--CCcE-EEEeCCCcEEEEECCCCCEEEEEc---------CccccccccceeE-ECCCCCeEEEEEcccceeEee
Confidence            35765  5433 333457789999998776321000         0011112344555 889888875432111     2


Q ss_pred             CCCeEEEEEcCCCc-eEEEEecccCCCeEEEEecCCCCEEEEEeCCCc-eeecCCCcEE
Q 016134          151 ECRFLHSWFCGEGL-TMLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT-AWNIESSAEF  207 (394)
Q Consensus       151 ~~~~i~iWd~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-vWd~~~~~~~  207 (394)
                      ..+.+.++|+.++. +.+.........+....|+|||+.||-...... +.+..++...
T Consensus        89 ~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~  147 (465)
T d1xfda1          89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI  147 (465)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred             ccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceE
Confidence            34588999998762 222223334556777899999999887764432 2344444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.19  E-value=0.008  Score=50.69  Aligned_cols=204  Identities=8%  Similarity=-0.040  Sum_probs=102.0

Q ss_pred             ccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccccccccCCCeecCCCCC--eEEEEEcC
Q 016134           84 NLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNVCCHWLLGNCVRGDECR--FLHSWFCG  161 (394)
Q Consensus        84 ~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~g~~~~--~i~iWd~~  161 (394)
                      +.+++..+ ++-+.+.|++++....             ...+...+.... |+|++.+||-....++...  .|.+.+..
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~-------------Lt~~~~~~~~p~-~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRK-------------IVSNLGVINNAR-FFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEE-------------EECSSSEEEEEE-ECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEE-------------EecCCCcccCEE-ECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            44555433 3335555777666432             112223455566 9999999986655444443  46666766


Q ss_pred             CCceEEEEecc-------cCCCeEEEEecCCCCEEEEEeCCCc--------eeecCCCcEEEecCCCCcEEEEEEcCC--
Q 016134          162 EGLTMLAKLEG-------HEKAVSGIALPLRSDKLFSGSRDGT--------AWNIESSAEFSLDGPVGEVYSMVVANE--  224 (394)
Q Consensus       162 ~~~~~~~~l~~-------h~~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~~~~~~~~~~~v~~l~~~~~--  224 (394)
                      ++ +.. .+..       ........+|+|+++.|+.......        +.+.+.+......  ......+.+.+.  
T Consensus        77 ~g-~~~-~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  152 (281)
T d1k32a2          77 NG-EIK-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHILFADGRR  152 (281)
T ss_dssp             TT-EEE-ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEEEEETTEE
T ss_pred             CC-ceE-EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccceeeecCCCe
Confidence            65 322 2221       2234577899999999887654432        2333333322211  111112222222  


Q ss_pred             EEEEEecC----------------------------CCCCCEEEEEecCCeEEEEe-C--CCeEEEEeCCCCceeEEEcC
Q 016134          225 MLFAGAQD----------------------------GHTRPVTCLAVGRSRLCSGS-M--DNTIRVWELDTLEPVMTLND  273 (394)
Q Consensus       225 ~l~~~~~~----------------------------~h~~~V~~l~~~~~~l~sgs-~--Dg~V~iwd~~~~~~~~~~~~  273 (394)
                      .++.....                            ..........+.++.++... .  ...|.++|+.+.+.. .+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~  231 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTS  231 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCC
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceE-Eeec
Confidence            11111111                            11122222333344443333 2  235777788765543 3332


Q ss_pred             -CCCCcEEEEEcCCEEEEEeCCCcEEEEEeCCCcee
Q 016134          274 -HTDAPMSLLCWDQFLLSCSLDHTIKVWFATGRGNL  308 (394)
Q Consensus       274 -h~~~v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~  308 (394)
                       ....+..+..+|+.|+.. .++.|.++|+.+++..
T Consensus       232 ~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         232 FTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             CCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             CCCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence             233444555557766653 4678999998776544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.17  E-value=0.028  Score=47.06  Aligned_cols=206  Identities=8%  Similarity=-0.075  Sum_probs=104.0

Q ss_pred             cccc--ccccCCCeecCCCCCeEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCc-------eeecCCC
Q 016134          135 KNVC--CHWLLGNCVRGDECRFLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGT-------AWNIESS  204 (394)
Q Consensus       135 ~~~~--~~~~~~~~~~g~~~~~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~-------vWd~~~~  204 (394)
                      .+|+  +..++=. ..|    -|.+.|+.++ + .+.|..+.+.+...+|||||+.||-... ++.       +.+..++
T Consensus         6 ~sPdi~G~~v~f~-~~~----dl~~~d~~~g-~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCD----DLWEHDLKSG-S-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             EEEEEETTEEEEE-ETT----EEEEEETTTC-C-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             cCCCCCCCEEEEE-eCC----cEEEEECCCC-C-EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            5666  6666421 222    4777788776 3 3456677888999999999999885543 222       3566677


Q ss_pred             cEEEecCCC-------CcEEEEEEcCC--EEEEEecC-CCCCC--EEEEEec---------CCeEEEEeCCCeEEEEeCC
Q 016134          205 AEFSLDGPV-------GEVYSMVVANE--MLFAGAQD-GHTRP--VTCLAVG---------RSRLCSGSMDNTIRVWELD  263 (394)
Q Consensus       205 ~~~~~~~~~-------~~v~~l~~~~~--~l~~~~~~-~h~~~--V~~l~~~---------~~~l~sgs~Dg~V~iwd~~  263 (394)
                      +...+....       .......|+++  .++..... .....  +..+...         +........++...++...
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeec
Confidence            666543322       23456778887  34332222 11111  1111111         1111122233333333221


Q ss_pred             C---------------------CceeEEEcCCCCCcEEEEEcCCEEEEEeC-C--CcEEEEEeCCCceeeEeecccCCcc
Q 016134          264 T---------------------LEPVMTLNDHTDAPMSLLCWDQFLLSCSL-D--HTIKVWFATGRGNLEAAYTHKEDNG  319 (394)
Q Consensus       264 ~---------------------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-D--g~i~vwd~~~~~~~~~~~~~~~~~~  319 (394)
                      .                     ..................+.+..++.... +  ..|.++|+...+.. .+.... ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~-~~~  236 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFT-DYY  236 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCC-SSC
T ss_pred             cccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceE-EeecCC-Ccc
Confidence            1                     00111112233344445555555555443 2  35777787655433 222221 122


Q ss_pred             eEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCcee
Q 016134          320 VLALGGLNDPDGKPVLICACNDNTVHLYELPSFMER  355 (394)
Q Consensus       320 ~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~  355 (394)
                      ..    .|+|||+.++.+  .++.|+++|+.+++..
T Consensus       237 ~~----~~SpDG~~I~f~--~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         237 PR----HLNTDGRRILFS--KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             EE----EEEESSSCEEEE--ETTEEEEECTTTCCEE
T ss_pred             cc----cCcCCCCEEEEE--eCCEEEEEECCCCCEE
Confidence            22    258999955543  3688999999887544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.02  E-value=0.059  Score=46.26  Aligned_cols=148  Identities=14%  Similarity=-0.004  Sum_probs=91.0

Q ss_pred             EEEec---CCeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc-CCEEEEEeCCCcEEEEEeCCCceeeEeeccc
Q 016134          240 CLAVG---RSRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW-DQFLLSCSLDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       240 ~l~~~---~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      +..|+   +.++.+=-..+.|..||.++++.. .+. ....+.++.+. +..|+.++.+ .|.++|..+++.........
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeec
Confidence            34454   334445446788999999887643 333 34567788776 4455555655 58899988765433222222


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeC----CCeEEEEECCCCceeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeC
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACN----DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKL  389 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~  389 (394)
                      .......-....+|+|. +.++...    .+.-.+|.+..++.......-...+.++|++++  ++++-+..+.|..+++
T Consensus        99 ~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             CCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence            22222233345689998 5554322    234567777777555444444567899999998  6667777888998887


Q ss_pred             CC
Q 016134          390 LA  391 (394)
Q Consensus       390 ~~  391 (394)
                      +.
T Consensus       178 d~  179 (295)
T d2ghsa1         178 DA  179 (295)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.85  E-value=0.12  Score=44.64  Aligned_cols=195  Identities=10%  Similarity=0.069  Sum_probs=101.4

Q ss_pred             CCeEEEEecCCCCEEEEEeCC-------Cce--eecCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec-
Q 016134          175 KAVSGIALPLRSDKLFSGSRD-------GTA--WNIESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG-  244 (394)
Q Consensus       175 ~~V~~l~~s~~~~~l~sgs~D-------g~v--Wd~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~-  244 (394)
                      .....++|.++|+++++....       +.|  ||.+++.........                 .......-..+.|+ 
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~-----------------~~~~~g~P~Gl~~~~   80 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE-----------------VNGYGGIPAGCQCDR   80 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE-----------------ETTEECCEEEEEECS
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCc-----------------cccCCCcceeEEEeC
Confidence            345678999999877765432       223  444444432211100                 00111234567776 


Q ss_pred             -CCeEEEEeCCCeEEEEeCCCCceeEEEcCCC----CCcEEEEEc--CCEEEEEeC-------------CCcEEEEEeCC
Q 016134          245 -RSRLCSGSMDNTIRVWELDTLEPVMTLNDHT----DAPMSLLCW--DQFLLSCSL-------------DHTIKVWFATG  304 (394)
Q Consensus       245 -~~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~----~~v~~l~~~--~~~l~s~s~-------------Dg~i~vwd~~~  304 (394)
                       ++.++++.....|...|..............    .....+.+.  |.+.++-..             ...=++|-+..
T Consensus        81 dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          81 DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee
Confidence             5677777777778888886543221111111    124667777  555555321             01113443332


Q ss_pred             CceeeEeecccCCcceEEEEeeECCCCC----cEEEEEeCCCeEEEEECCCCceeEE---E---ec--CCcEEEEEECCC
Q 016134          305 RGNLEAAYTHKEDNGVLALGGLNDPDGK----PVLICACNDNTVHLYELPSFMERGR---I---FS--KHEVRVIEIGPD  372 (394)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~----~~l~sgs~dg~I~iwd~~~~~~~~~---~---~~--~~~v~~l~~sp~  372 (394)
                      ......+........-++    ++|++.    .++++-+..+.|..||+.....+..   +   ..  ....-.+++..+
T Consensus       161 dg~~~~~~~~~~~pNGi~----~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         161 DGQMIQVDTAFQFPNGIA----VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             TSCEEEEEEEESSEEEEE----EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             cCceeEeeCCcceeeeeE----ECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            222222221111111222    344442    3666677889999998764433221   1   11  224678999999


Q ss_pred             C-EEEEEeCCCeEEEEeCC
Q 016134          373 K-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       373 ~-~l~tgs~Dg~I~vWd~~  390 (394)
                      | ++++....+.|.+|+-+
T Consensus       237 GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             CCEEEEEETTTEEEEECTT
T ss_pred             CcEEEEEcCCCEEEEEeCC
Confidence            9 66666678899999855

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.79  E-value=0.22  Score=46.76  Aligned_cols=92  Identities=12%  Similarity=0.064  Sum_probs=56.8

Q ss_pred             CcEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE--EEECC
Q 016134          295 HTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGP  371 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~sp  371 (394)
                      |.|.-||+.+++.+-........ ...++.      .+. +++.|+.|+.++.+|..+++++-++.....+..  +.+.-
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T------agg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~  510 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST------AGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE------CCC-EEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence            45777788777665544332211 122222      344 777899999999999999999988876333221  33445


Q ss_pred             CC--EEEEEeCC--------------------CeEEEEeCCCCC
Q 016134          372 DK--LFFTGDGA--------------------GMLGVWKLLAKP  393 (394)
Q Consensus       372 ~~--~l~tgs~D--------------------g~I~vWd~~~~~  393 (394)
                      +|  +|+..+..                    +.|.+|.|.-+.
T Consensus       511 dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~  554 (560)
T d1kv9a2         511 AGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKA  554 (560)
T ss_dssp             TTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCC
T ss_pred             CCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCC
Confidence            67  55544332                    368888876544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.15  E-value=0.55  Score=44.04  Aligned_cols=77  Identities=10%  Similarity=-0.070  Sum_probs=46.4

Q ss_pred             CcEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE--EEECC
Q 016134          295 HTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGP  371 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~sp  371 (394)
                      |.|.-+|+.+++.+-........ ...+..      .+. ++++|+.|+.++-+|.++++++-++.....+.+  +.+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T------agg-lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~  516 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT------KGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE------TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEe------cCC-EEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEE
Confidence            35666666666555443322111 112221      344 677899999999999999999988876433322  44445


Q ss_pred             CC--EEEEE
Q 016134          372 DK--LFFTG  378 (394)
Q Consensus       372 ~~--~l~tg  378 (394)
                      ||  +|+..
T Consensus       517 dGkqYi~v~  525 (571)
T d2ad6a1         517 KGKQYIGSM  525 (571)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            77  65443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.99  E-value=0.13  Score=45.36  Aligned_cols=124  Identities=6%  Similarity=-0.114  Sum_probs=61.5

Q ss_pred             ccccccccCCCeecCCCCCeEEEEEcCCCce-EEEEecccCCCeEEEEecCCCCEEEEEeCCCc--------eeecCCCc
Q 016134          135 KNVCCHWLLGNCVRGDECRFLHSWFCGEGLT-MLAKLEGHEKAVSGIALPLRSDKLFSGSRDGT--------AWNIESSA  205 (394)
Q Consensus       135 ~~~~~~~~~~~~~~g~~~~~i~iWd~~~~~~-~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~--------vWd~~~~~  205 (394)
                      +.+++..++.+..+.   ..+.+||..+... ....+.. ...-...+..+|++.++.++.+..        +||..+.+
T Consensus        83 ~~~~g~i~v~Gg~~~---~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          83 MDGNGQIVVTGGNDA---KKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             ECTTSCEEEECSSST---TCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCCcEEEeecCCC---cceeEecCccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            455666665443332   4789999976622 2212211 222345666789999999886443        58877776


Q ss_pred             EEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCce
Q 016134          206 EFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLEP  267 (394)
Q Consensus       206 ~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~~  267 (394)
                      -..+............. .    +..............++..++.+..+..+.++|..+...
T Consensus       159 W~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADK-Q----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EEEETTSCSGGGCCCCT-T----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eeecCCCcccccccccc-c----ceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            54332111000000000 0    000000111111112366677777778888888876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.038  Score=51.00  Aligned_cols=136  Identities=10%  Similarity=0.053  Sum_probs=80.5

Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCC---CCCcEEEEEc--CCEEEEEe---------CCCcEEEEEeCCCceeeEeeccc
Q 016134          250 SGSMDNTIRVWELDTLEPVMTLNDH---TDAPMSLLCW--DQFLLSCS---------LDHTIKVWFATGRGNLEAAYTHK  315 (394)
Q Consensus       250 sgs~Dg~V~iwd~~~~~~~~~~~~h---~~~v~~l~~~--~~~l~s~s---------~Dg~i~vwd~~~~~~~~~~~~~~  315 (394)
                      .-..+|.|.+||+.+++....+...   ...+....++  +++++...         ..+.+.++|+.++..........
T Consensus        32 ~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~  111 (465)
T d1xfda1          32 YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV  111 (465)
T ss_dssp             CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred             EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC
Confidence            3356788999999887764444332   2245555566  67766653         35678899998765433222211


Q ss_pred             CCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec--CCcE-----------------EEEEECCCC-EE
Q 016134          316 EDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS--KHEV-----------------RVIEIGPDK-LF  375 (394)
Q Consensus       316 ~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~v-----------------~~l~~sp~~-~l  375 (394)
                      ......  ...|+|||+. ||-.. ++.|.+.+...+..+.....  ...|                 .++.|+||| +|
T Consensus       112 ~~~~l~--~~~wSPDG~~-iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~i  187 (465)
T d1xfda1         112 SNAKLQ--YAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL  187 (465)
T ss_dssp             CSCCCS--BCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred             Cccccc--eeeeccCCce-EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeE
Confidence            111111  2347999995 44333 67899998877655444332  1112                 477899999 66


Q ss_pred             EEEe-CCCeEEEEeC
Q 016134          376 FTGD-GAGMLGVWKL  389 (394)
Q Consensus       376 ~tgs-~Dg~I~vWd~  389 (394)
                      |... .+..|..+.+
T Consensus       188 af~~~D~s~V~~~~~  202 (465)
T d1xfda1         188 AYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEEECTTSCEEEE
T ss_pred             EEEEecccccceeec
Confidence            6654 4455555544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.70  E-value=0.51  Score=40.05  Aligned_cols=195  Identities=10%  Similarity=0.137  Sum_probs=111.2

Q ss_pred             cccccccccCCCCCcccccccCCCCCCCCCCCCCCccccccCCCCccceeeeccccc--cccccCCCeecCCCCCeEEEE
Q 016134           81 LKNNLWVSSGSEDRIPHVRNRENPGYTGPKNSSSASSTVSDESGDKSTSKKTTLKNV--CCHWLLGNCVRGDECRFLHSW  158 (394)
Q Consensus        81 ~~~~~~~~s~s~d~~~~~w~~~~~~~~~~~~s~~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~i~iW  158 (394)
                      -+|+.+|+.-=+.+++.+.|+++..-.+                      ++.+..+  --+|+......-=....|+-|
T Consensus        70 MhP~~~IiALrag~~LQiFnletK~klk----------------------s~~~~e~VvfWkWis~~~L~lVT~taVYHW  127 (327)
T d1utca2          70 MNPASKVIALKAGKTLQIFNIEMKSKMK----------------------AHTMTDDVTFWKWISLNTVALVTDNAVYHW  127 (327)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEE----------------------EEECSSCCCEEEESSSSEEEEECSSEEEEE
T ss_pred             cCCCCcEEEEecCCeEEEEehhHhhhhc----------------------eEEcCCCcEEEEecCCCEEEEEcCCceEEE
Confidence            4577777755557889999999765221                      1110000  012232211111112278999


Q ss_pred             EcCCCceEEEEecccC----CCeEEEEecCCCCEEEEEe---CCCc------eeecCCCcEEEecCCCCcEEEEEEcCCE
Q 016134          159 FCGEGLTMLAKLEGHE----KAVSGIALPLRSDKLFSGS---RDGT------AWNIESSAEFSLDGPVGEVYSMVVANEM  225 (394)
Q Consensus       159 d~~~~~~~~~~l~~h~----~~V~~l~~s~~~~~l~sgs---~Dg~------vWd~~~~~~~~~~~~~~~v~~l~~~~~~  225 (394)
                      +++....+.+.+.-|.    ..|..-..+++.+.++-.+   .++.      +|..+.+....+.+|......+.+..+ 
T Consensus       128 ~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~-  206 (327)
T d1utca2         128 SMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGN-  206 (327)
T ss_dssp             ESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTC-
T ss_pred             cccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCC-
Confidence            9966557777777664    4577777788888766443   3333      688888877777777655444433221 


Q ss_pred             EEEEecCCCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCc--------eeEEE----cCCCCCcEEEEEc--CCEEEEE
Q 016134          226 LFAGAQDGHTRPVTCLAVGRSRLCSGSMDNTIRVWELDTLE--------PVMTL----NDHTDAPMSLLCW--DQFLLSC  291 (394)
Q Consensus       226 l~~~~~~~h~~~V~~l~~~~~~l~sgs~Dg~V~iwd~~~~~--------~~~~~----~~h~~~v~~l~~~--~~~l~s~  291 (394)
                             .+...+.|++..      +...++++|-++....        ....+    +...+-..++..+  -..+..-
T Consensus       207 -------~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         207 -------AEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             -------SSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             -------CCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence                   222233333322      1223567777764311        11111    3555666777776  7777777


Q ss_pred             eCCCcEEEEEeCCCceeeEe
Q 016134          292 SLDHTIKVWFATGRGNLEAA  311 (394)
Q Consensus       292 s~Dg~i~vwd~~~~~~~~~~  311 (394)
                      ..-|.|.+||+.++.++..-
T Consensus       274 TK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEE
T ss_pred             ecCcEEEEEEcccccEEEEe
Confidence            77888888888887766543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.60  E-value=0.93  Score=42.38  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=54.0

Q ss_pred             cEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEE--EEECCC
Q 016134          296 TIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRV--IEIGPD  372 (394)
Q Consensus       296 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~--l~~sp~  372 (394)
                      .|.-||+.+++.+-........ ...++      -.+. +|++|+.|+.++.||.++++++-++.....+.+  +.+.-+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~ls------tagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~  530 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLT------TAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD  530 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEE------ETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEE------EcCC-EEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEEC
Confidence            4566666666555443322211 11222      2455 778899999999999999999988876333221  334446


Q ss_pred             C--EEEEEeC----------------CCeEEEEeCCCCC
Q 016134          373 K--LFFTGDG----------------AGMLGVWKLLAKP  393 (394)
Q Consensus       373 ~--~l~tgs~----------------Dg~I~vWd~~~~~  393 (394)
                      |  +|+..+.                .+.|.+|.|.-+.
T Consensus       531 GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~  569 (573)
T d1kb0a2         531 GRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA  569 (573)
T ss_dssp             TEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred             CEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcC
Confidence            6  4444332                2367888776543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.63  Score=38.72  Aligned_cols=197  Identities=10%  Similarity=0.004  Sum_probs=106.7

Q ss_pred             ecccCCCeEEEEecCCCCEEEEEeC-CCceee--cCCCcEEEecCCCCcEEEEEEcCCEEEEEecCCCCCCEEEEEec--
Q 016134          170 LEGHEKAVSGIALPLRSDKLFSGSR-DGTAWN--IESSAEFSLDGPVGEVYSMVVANEMLFAGAQDGHTRPVTCLAVG--  244 (394)
Q Consensus       170 l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~vWd--~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~~~h~~~V~~l~~~--  244 (394)
                      +..+...+.+|+|++..++|+-... ++.|+.  +.......+..                     .-...+.+|+++  
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~---------------------~~~~~p~~iAvD~~   89 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---------------------QDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---------------------TTCCCEEEEEEETT
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE---------------------eccccccEEEEecc
Confidence            4445556888999887777765433 333432  22222211100                     112345666665  


Q ss_pred             CCeEE-EEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCcEEEE--EeCCCceeeEeecccCCc
Q 016134          245 RSRLC-SGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHTIKVW--FATGRGNLEAAYTHKEDN  318 (394)
Q Consensus       245 ~~~l~-sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~i~vw--d~~~~~~~~~~~~~~~~~  318 (394)
                      ++.|+ +-...+.|.+.++........+......+..++.+  ..+|+ +-...+..+|+  ++... ....+.. ..-.
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~~-~~~~  167 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQ-DNLG  167 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEEC-TTCS
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Cceeeee-eccc
Confidence            55544 55567899999987655433333334567888887  34444 43222333455  44322 2222221 1112


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEecCCcEEEEEECCCCEEEEEeCCCeEEEEeCCC
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFSKHEVRVIEIGPDKLFFTGDGAGMLGVWKLLA  391 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~~l~tgs~Dg~I~vWd~~~  391 (394)
                      ....+  ++++.++.+..+-...+.|...++........+.......+|++..+.++++-...+.|...|..+
T Consensus       168 ~P~gl--aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         168 LPNGL--TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             CEEEE--EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             ccceE--EEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCC
Confidence            22223  246666646666667789999999765544444444446788886332555555677887777654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.21  E-value=1.2  Score=36.82  Aligned_cols=150  Identities=11%  Similarity=0.028  Sum_probs=84.9

Q ss_pred             CEEEEEec--CCeEEE-EeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEE-EEeCCCcEEEEEeCCCceeeE
Q 016134          237 PVTCLAVG--RSRLCS-GSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLL-SCSLDHTIKVWFATGRGNLEA  310 (394)
Q Consensus       237 ~V~~l~~~--~~~l~s-gs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~Dg~i~vwd~~~~~~~~~  310 (394)
                      .+..|+|+  .+.|+- -..++.|+..++........+......+..++++  +..|. +-...+.|.+.++...... .
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-V  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-E
Confidence            45667776  455444 4567889988887655544444444567888886  55555 4455779999998754432 2


Q ss_pred             eecccCCcceEEEEeeECCCCCcEEEEEeCCCe--EEEEECCCCceeEEEec-CCcEEEEEECCCC-EE-EEEeCCCeEE
Q 016134          311 AYTHKEDNGVLALGGLNDPDGKPVLICACNDNT--VHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LF-FTGDGAGMLG  385 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l-~tgs~Dg~I~  385 (394)
                      +.... ......+  +.+|....++.+-...+.  |.--++........... -.....|++.+.+ .| ++-...+.|.
T Consensus       116 l~~~~-l~~p~~l--~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         116 LFDTG-LVNPRGI--VTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             EECSS-CSSEEEE--EEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             Eeccc-ccCCcEE--EEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            22221 1122222  246766635544332233  44445543332222222 3467899998776 44 5545677888


Q ss_pred             EEeCC
Q 016134          386 VWKLL  390 (394)
Q Consensus       386 vWd~~  390 (394)
                      ..+++
T Consensus       193 ~~~~~  197 (263)
T d1npea_         193 CLNPA  197 (263)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            77765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.57  E-value=2.8  Score=35.99  Aligned_cols=133  Identities=9%  Similarity=0.034  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCc-eEEEEe-cccCCCeEEEEecCCCCEEEEEeCCCc---eeecCCCcEEEecCCCCcEEEEEEcCCEEEE
Q 016134          154 FLHSWFCGEGL-TMLAKL-EGHEKAVSGIALPLRSDKLFSGSRDGT---AWNIESSAEFSLDGPVGEVYSMVVANEMLFA  228 (394)
Q Consensus       154 ~i~iWd~~~~~-~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~---vWd~~~~~~~~~~~~~~~v~~l~~~~~~l~~  228 (394)
                      .+.+||..++. ..+..+ ..|.......++.+++++++.|+.+..   +||..+...........              
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~--------------  118 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV--------------  118 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS--------------
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccc--------------
Confidence            46789987652 222222 334444456678899999999887654   68888776554321110              


Q ss_pred             EecCCCCCCEEEEEe-cCCeEEEEeCC------CeEEEEeCCCCceeEEEcC----------CC------CCcEEEE-Ec
Q 016134          229 GAQDGHTRPVTCLAV-GRSRLCSGSMD------NTIRVWELDTLEPVMTLND----------HT------DAPMSLL-CW  284 (394)
Q Consensus       229 ~~~~~h~~~V~~l~~-~~~~l~sgs~D------g~V~iwd~~~~~~~~~~~~----------h~------~~v~~l~-~~  284 (394)
                           .......+.. ++.+++.|+.+      ..+.+||..+.+-. .+..          +.      .....+. ..
T Consensus       119 -----~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (387)
T d1k3ia3         119 -----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK  192 (387)
T ss_dssp             -----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred             -----cccccceeeecCCceeeeccccccccccceeeeecCCCCcee-ecCCCcccccccccccceeeccceeEEEEeCC
Confidence                 0111122222 35666766642      36899999875422 1110          00      1111111 12


Q ss_pred             CCEEEEEeCCCcEEEEEeCCCc
Q 016134          285 DQFLLSCSLDHTIKVWFATGRG  306 (394)
Q Consensus       285 ~~~l~s~s~Dg~i~vwd~~~~~  306 (394)
                      ++.++.+..+..+.++|..+..
T Consensus       193 G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         193 GSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             GCEEECCSSSEEEEEECSTTCE
T ss_pred             CCEEEecCcCCcEEecCcccCc
Confidence            5666666666667777765543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.83  E-value=1.2  Score=41.45  Aligned_cols=52  Identities=10%  Similarity=0.035  Sum_probs=34.9

Q ss_pred             CeEEEEECCCCceeEEEecCCcEEE-EEECCCCEEEEEeCCCeEEEEeCCCCC
Q 016134          342 NTVHLYELPSFMERGRIFSKHEVRV-IEIGPDKLFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       342 g~I~iwd~~~~~~~~~~~~~~~v~~-l~~sp~~~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      |.|.-+|+.+++.+-+........+ ......+++++|+.|+.++.+|.++.+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            4677788888887766655332221 111234588889999999999988754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.65  E-value=4.2  Score=36.05  Aligned_cols=64  Identities=11%  Similarity=0.021  Sum_probs=46.3

Q ss_pred             ECCCCCcEEEEEeCCCeEEEEECCCCcee------------EEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCC
Q 016134          327 NDPDGKPVLICACNDNTVHLYELPSFMER------------GRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       327 ~s~~g~~~l~sgs~dg~I~iwd~~~~~~~------------~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~  390 (394)
                      .+|||+++++++..+.++.|+|+++....            .+....-.....+|..+| -..|---|.+|.-|++.
T Consensus       282 vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         282 MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            48999988888899999999999753211            111113346677898888 55555689999999974

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.33  E-value=5.7  Score=36.92  Aligned_cols=59  Identities=12%  Similarity=-0.008  Sum_probs=38.3

Q ss_pred             CcEEEEEeCCCceeeEeecccCC-cceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec
Q 016134          295 HTIKVWFATGRGNLEAAYTHKED-NGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS  360 (394)
Q Consensus       295 g~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  360 (394)
                      |.|.-||+.+++.+-........ ...++      ..+. +++.|+.|+.++.+|..+++++-++..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~ls------Tagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMA------TAGD-LVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEE------ETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeE------ecCC-EEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            45666677666654433222111 11222      2355 777899999999999999999988876

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.10  E-value=0.7  Score=43.37  Aligned_cols=82  Identities=15%  Similarity=0.026  Sum_probs=55.3

Q ss_pred             CCeEEEEeCCCCceeEEEcCCCCCcE-EEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCC
Q 016134          254 DNTIRVWELDTLEPVMTLNDHTDAPM-SLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       254 Dg~V~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  332 (394)
                      .|.|.-+|+.+++.+-++..+..... .++-.+.++++++.|+.++.+|.++++.+-.+.......... +  .|..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P-~--ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP-I--TWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-E--EEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC-E--EEEECCE
Confidence            36788899999998877764322211 233447888899999999999999999987776543322221 1  2356786


Q ss_pred             cEEEEE
Q 016134          333 PVLICA  338 (394)
Q Consensus       333 ~~l~sg  338 (394)
                      .+++..
T Consensus       542 qYv~i~  547 (582)
T d1flga_         542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            565543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=4.7  Score=33.02  Aligned_cols=215  Identities=10%  Similarity=0.028  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCceEEEEecccCCCeEEEEecCCCCEEEEEeC-CCceeec--CCCcEEEecCCCCcEEEEEEcCCEEEEEe
Q 016134          154 FLHSWFCGEGLTMLAKLEGHEKAVSGIALPLRSDKLFSGSR-DGTAWNI--ESSAEFSLDGPVGEVYSMVVANEMLFAGA  230 (394)
Q Consensus       154 ~i~iWd~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~vWd~--~~~~~~~~~~~~~~v~~l~~~~~~l~~~~  230 (394)
                      .|+-.++.+. +. ..+......+.+|+|++..++|+-... ++.|+..  ......      ...        ..+. .
T Consensus        11 ~I~~~~l~~~-~~-~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~------~~~--------~~~~-~   73 (266)
T d1ijqa1          11 EVRKMTLDRS-EY-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SSY--------DTVI-S   73 (266)
T ss_dssp             SEEEEETTSC-CC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------C--------EEEE-C
T ss_pred             eEEEEECCCC-cc-eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC------cce--------EEEE-e
Confidence            4777788654 22 233345667889999988777765443 3334321  110000      000        0000 0


Q ss_pred             cCCCCCCEEEEEec--C-CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc--CCEEEEEeC--CCcEEEEEeC
Q 016134          231 QDGHTRPVTCLAVG--R-SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW--DQFLLSCSL--DHTIKVWFAT  303 (394)
Q Consensus       231 ~~~h~~~V~~l~~~--~-~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--Dg~i~vwd~~  303 (394)
                        .....+..|+++  + ++.++-...+.|.+.++........+.........++.+  ..+|.....  .+.|.-.++.
T Consensus        74 --~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d  151 (266)
T d1ijqa1          74 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (266)
T ss_dssp             --SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             --CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC
Confidence              111233345553  4 445555667899999998766555555556677888887  344444332  3455555554


Q ss_pred             CCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec---CCcEEEEEECCCCEEEEEeC
Q 016134          304 GRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS---KHEVRVIEIGPDKLFFTGDG  380 (394)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~v~~l~~sp~~~l~tgs~  380 (394)
                      . .....+.... -.....+.  .++.++.+..+-...+.|...++...........   .....+|++..+.++.+-..
T Consensus       152 G-s~~~~l~~~~-~~~p~gl~--iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~  227 (266)
T d1ijqa1         152 G-VDIYSLVTEN-IQWPNGIT--LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII  227 (266)
T ss_dssp             S-CCEEEEECSS-CSCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT
T ss_pred             C-Cceecccccc-cceeeEEE--eeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECC
Confidence            3 2233332211 11222232  3666665777777788999999875543333322   23467788774435555557


Q ss_pred             CCeEEEEeCCC
Q 016134          381 AGMLGVWKLLA  391 (394)
Q Consensus       381 Dg~I~vWd~~~  391 (394)
                      ++.|...+..+
T Consensus       228 ~~~I~~~~~~~  238 (266)
T d1ijqa1         228 NEAIFSANRLT  238 (266)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCeEEEEECCC
Confidence            77777776544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.85  E-value=6.5  Score=33.81  Aligned_cols=142  Identities=12%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEEcCCCCCcEEEEEc------CC--EEEEEe-CC---CcEEEEEeCCC-ceeeEee
Q 016134          246 SRLCSGSMDNTIRVWELDTLEPVMTLNDHTDAPMSLLCW------DQ--FLLSCS-LD---HTIKVWFATGR-GNLEAAY  312 (394)
Q Consensus       246 ~~l~sgs~Dg~V~iwd~~~~~~~~~~~~h~~~v~~l~~~------~~--~l~s~s-~D---g~i~vwd~~~~-~~~~~~~  312 (394)
                      .+++....++-|.+||+. |+.++.+.  .+.+..|..-      ++  -|+.++ .+   .+|.+|.+... ..+..+.
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            466666677779999996 78887765  3455555433      21  244444 22   36888887532 2222222


Q ss_pred             ccc-----CCcceEEEEeeECCC-CCcEEEEEeCCCeEEEEECC---CC----ceeEEEecCCcEEEEEECCCC-EEEEE
Q 016134          313 THK-----EDNGVLALGGLNDPD-GKPVLICACNDNTVHLYELP---SF----MERGRIFSKHEVRVIEIGPDK-LFFTG  378 (394)
Q Consensus       313 ~~~-----~~~~~~~~~~~~s~~-g~~~l~sgs~dg~I~iwd~~---~~----~~~~~~~~~~~v~~l~~sp~~-~l~tg  378 (394)
                      ...     ....+..+|...++. +..++++...+|.+..|.+.   .+    .++..+.....+..+.+.++. .|+.+
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEe
Confidence            111     111233344334554 55466777889999988763   22    234445557789999999887 88888


Q ss_pred             eCCCeEEEEeCC
Q 016134          379 DGAGMLGVWKLL  390 (394)
Q Consensus       379 s~Dg~I~vWd~~  390 (394)
                      -++.-|..++++
T Consensus       198 EE~~Giw~~~a~  209 (353)
T d1h6la_         198 EEDEAIWKFSAE  209 (353)
T ss_dssp             ETTTEEEEEESS
T ss_pred             cCccceEEEEec
Confidence            888766555544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.64  E-value=6  Score=33.20  Aligned_cols=131  Identities=8%  Similarity=0.003  Sum_probs=78.5

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcEEEEEcC-----CEEEEEe---CCCcEEEEEeCCCce--------eeEeecccCCc
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPMSLLCWD-----QFLLSCS---LDHTIKVWFATGRGN--------LEAAYTHKEDN  318 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s---~Dg~i~vwd~~~~~~--------~~~~~~~~~~~  318 (394)
                      |.+.+|..+. +..+.+++|......+...+     ++|+.+.   ..+++.+-++.....        ...+....+..
T Consensus       176 G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~  254 (327)
T d1utca2         176 GAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  254 (327)
T ss_dssp             EEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCT
T ss_pred             EEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcccc
Confidence            6788999864 56677888866555554442     1333322   236788888765211        11122222222


Q ss_pred             ceEEEEeeECCCCCcEEEEEeCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC-EEEEEeCCCeEEEE
Q 016134          319 GVLALGGLNDPDGKPVLICACNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK-LFFTGDGAGMLGVW  387 (394)
Q Consensus       319 ~~~~~~~~~s~~g~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~-~l~tgs~Dg~I~vW  387 (394)
                      ....+....++.-. ++..-+.-|.|++||++++..+..-.- ...|...+-..+. -++.-..+|.|..-
T Consensus       255 ~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         255 NDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             TCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             CCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEEE
Confidence            33333334455555 777778899999999999988876655 5566655544443 55555578877543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=5.5  Score=32.31  Aligned_cols=58  Identities=12%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             EEEEEeCC-----CeEEEEECCCCceeEEEec--CCcEEEEEECCCC-EEEEEeCCC-----eEEEEeCCCC
Q 016134          334 VLICACND-----NTVHLYELPSFMERGRIFS--KHEVRVIEIGPDK-LFFTGDGAG-----MLGVWKLLAK  392 (394)
Q Consensus       334 ~l~sgs~d-----g~I~iwd~~~~~~~~~~~~--~~~v~~l~~sp~~-~l~tgs~Dg-----~I~vWd~~~~  392 (394)
                      +++.|+.+     ..+.+||..+.+....-..  ...-.+++.. ++ +++.|+.++     .|.+||+.+.
T Consensus       198 i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE-CCEEEEEecCCCCeecceEEEEECCCC
Confidence            56655443     3567778776543322111  1111122232 45 666665444     3778887753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.71  E-value=1.4  Score=41.13  Aligned_cols=81  Identities=12%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCC-cEEEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCCc
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDA-PMSLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGKP  333 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  333 (394)
                      |.|.-||+.+++.+-+.+..... --.+...+.++++++.|+.++.+|.++++.+-.+...........   .|..+|+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~---ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS---TYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCE---EEEECCEE
Confidence            57889999999988777543211 123445588999999999999999999999877765433222211   13447775


Q ss_pred             EEEEE
Q 016134          334 VLICA  338 (394)
Q Consensus       334 ~l~sg  338 (394)
                      +|+..
T Consensus       534 Yv~v~  538 (573)
T d1kb0a2         534 YVSVA  538 (573)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.54  E-value=1.3  Score=41.37  Aligned_cols=53  Identities=13%  Similarity=0.063  Sum_probs=38.6

Q ss_pred             CCeEEEEECCCCceeEEEecCCcEEEEEECCCC-EEEEEeCCCeEEEEeCCCCC
Q 016134          341 DNTVHLYELPSFMERGRIFSKHEVRVIEIGPDK-LFFTGDGAGMLGVWKLLAKP  393 (394)
Q Consensus       341 dg~I~iwd~~~~~~~~~~~~~~~v~~l~~sp~~-~l~tgs~Dg~I~vWd~~~~~  393 (394)
                      .|.|.-+|+.+++.+-+.....++.+-..+..+ ++++|+.||.++.+|.++.+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            367888999999888777664444322223344 88889999999999988764

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.056  Score=27.58  Aligned_cols=25  Identities=24%  Similarity=0.825  Sum_probs=21.5

Q ss_pred             CCceeEEEeeeCccCC-CCCcccccc
Q 016134           35 TNKVVCVYVLEGRCNR-NPCRFAHTE   59 (394)
Q Consensus        35 ~~~~~~~~~~~~~~~~-~~~~~~h~~   59 (394)
                      +....|+|+.+|-|-| --|+|+|.+
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccCC
Confidence            4566899999999999 679999975

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.06  E-value=0.065  Score=30.67  Aligned_cols=25  Identities=36%  Similarity=0.721  Sum_probs=20.3

Q ss_pred             CceeEEEeee-CccCC-CCCccccccC
Q 016134           36 NKVVCVYVLE-GRCNR-NPCRFAHTES   60 (394)
Q Consensus        36 ~~~~~~~~~~-~~~~~-~~~~~~h~~~   60 (394)
                      ..+-|++|.+ |.|.. .-|.|.|.+.
T Consensus         8 KT~lC~~~~~~g~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_           8 KTELCRTYSESGRCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred             ccccChhhhcCCcCCCCCCCCCCCCHH
Confidence            5678999976 89997 6699999653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.02  E-value=1.8  Score=40.25  Aligned_cols=81  Identities=6%  Similarity=0.011  Sum_probs=54.0

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcE--EEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCC
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPM--SLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  332 (394)
                      |.|.-||+.+++.+-++... ....  .+.-.+.+++.++.|+.++.+|.++++.+-.+.......... +  .|..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P-~--ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP-M--TFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-E--EEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC-E--EEEECCE
Confidence            67888999999988766422 1111  234448888999999999999999999887766543322211 1  1345777


Q ss_pred             cEEEEEe
Q 016134          333 PVLICAC  339 (394)
Q Consensus       333 ~~l~sgs  339 (394)
                      .+|+...
T Consensus       514 qyv~v~a  520 (560)
T d1kv9a2         514 QYVAIMA  520 (560)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5665443

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=0.049  Score=30.40  Aligned_cols=24  Identities=33%  Similarity=0.677  Sum_probs=20.2

Q ss_pred             CceeEEEeee-CccCC-CCCcccccc
Q 016134           36 NKVVCVYVLE-GRCNR-NPCRFAHTE   59 (394)
Q Consensus        36 ~~~~~~~~~~-~~~~~-~~~~~~h~~   59 (394)
                      ..+.|++|.+ |+|.. .-|.|.|.+
T Consensus         5 KT~lC~~~~~~g~C~~G~~C~FAHg~   30 (36)
T d1rgoa1           5 KTELCRPFEESGTCKYGEKCQFAHGF   30 (36)
T ss_dssp             TSSBCHHHHHHSCCTTGGGCSSBSSG
T ss_pred             chhhCcchhcCCcCCCCCcCCCcCCH
Confidence            5678999975 99999 669999975

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.88  E-value=12  Score=32.94  Aligned_cols=140  Identities=13%  Similarity=0.042  Sum_probs=84.6

Q ss_pred             CCeEEEE-eCCCeEEEEeCCCCceeEEEcC-CCCCcEEEEEc----CCEEEEEeCCC------------------cEEEE
Q 016134          245 RSRLCSG-SMDNTIRVWELDTLEPVMTLND-HTDAPMSLLCW----DQFLLSCSLDH------------------TIKVW  300 (394)
Q Consensus       245 ~~~l~sg-s~Dg~V~iwd~~~~~~~~~~~~-h~~~v~~l~~~----~~~l~s~s~Dg------------------~i~vw  300 (394)
                      |++|++. ..+..|.+-|+++.++.+.++. ....+..+...    -.+++..+++.                  .+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            5665554 4688999999999998765543 33455666654    34777666632                  25667


Q ss_pred             EeCCCceeeEeecccCCcceEEEEeeECCCCCcEEEEEeCC--------------------------------------C
Q 016134          301 FATGRGNLEAAYTHKEDNGVLALGGLNDPDGKPVLICACND--------------------------------------N  342 (394)
Q Consensus       301 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sgs~d--------------------------------------g  342 (394)
                      |..+.+.......... .....    ++++|+ ++++.+.+                                      +
T Consensus       179 D~~tm~V~~QV~V~g~-ld~~~----~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         179 DADKWEVAWQVLVSGN-LDNCD----ADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             ETTTTEEEEEEEESSC-CCCEE----ECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             ecCCceEEEEeeeCCC-hhccc----cCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            8776665544443221 22233    489999 55544432                                      1


Q ss_pred             eEEEEECCCC---ceeEEEecCCcEEEEEECCCC--EEEEEeCCCeEEEEeCC
Q 016134          343 TVHLYELPSF---MERGRIFSKHEVRVIEIGPDK--LFFTGDGAGMLGVWKLL  390 (394)
Q Consensus       343 ~I~iwd~~~~---~~~~~~~~~~~v~~l~~sp~~--~l~tgs~Dg~I~vWd~~  390 (394)
                      .+.+-|.+..   ..+..+........+.++|||  .++++--+.++.|+|+.
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            2344444321   122233334456778999999  56666689999999985

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.20  E-value=1.9  Score=40.43  Aligned_cols=80  Identities=11%  Similarity=-0.016  Sum_probs=52.3

Q ss_pred             CeEEEEeCCCCceeEEEcCCCCCcE--EEEEcCCEEEEEeCCCcEEEEEeCCCceeeEeecccCCcceEEEEeeECCCCC
Q 016134          255 NTIRVWELDTLEPVMTLNDHTDAPM--SLLCWDQFLLSCSLDHTIKVWFATGRGNLEAAYTHKEDNGVLALGGLNDPDGK  332 (394)
Q Consensus       255 g~V~iwd~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  332 (394)
                      |.|.-||+.+++.+-+... ..++.  .+.-.+.+++.++.|+.++.+|.++++.+-.+.......... +  .|..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P-~--tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP-M--TYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-E--EEEETTE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC-e--EEEECCE
Confidence            6789999999998765532 12211  122237888889999999999999999987776543322211 1  1345777


Q ss_pred             cEEEEE
Q 016134          333 PVLICA  338 (394)
Q Consensus       333 ~~l~sg  338 (394)
                      .+|+..
T Consensus       529 QYvav~  534 (596)
T d1w6sa_         529 QYVAIY  534 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            566543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=13  Score=30.08  Aligned_cols=152  Identities=13%  Similarity=0.020  Sum_probs=81.1

Q ss_pred             CCEEEEEec--CCeEEEE-eCCCeEEEEeCCCCc----eeEEEcCCCCCcEEEEEc--CC-EEEEEeCCCcEEEEEeCCC
Q 016134          236 RPVTCLAVG--RSRLCSG-SMDNTIRVWELDTLE----PVMTLNDHTDAPMSLLCW--DQ-FLLSCSLDHTIKVWFATGR  305 (394)
Q Consensus       236 ~~V~~l~~~--~~~l~sg-s~Dg~V~iwd~~~~~----~~~~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~vwd~~~~  305 (394)
                      ..+.+|+|+  .+.|+-. ..++.|.-.++....    ....+......+..++++  +. +.++-...++|.+.++...
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~  109 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence            355667775  4444433 456667766664321    112223233456667775  44 4444456778999998755


Q ss_pred             ceeeEeecccCCcceEEEEeeECCCCCcEEEEE-eCCCeEEEEECCCCceeEEEec-CCcEEEEEECCCC--EEEEEeCC
Q 016134          306 GNLEAAYTHKEDNGVLALGGLNDPDGKPVLICA-CNDNTVHLYELPSFMERGRIFS-KHEVRVIEIGPDK--LFFTGDGA  381 (394)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~-~~~v~~l~~sp~~--~l~tgs~D  381 (394)
                      ...............++    .+|....++.+- +..+.|.-.++........... -.....+++.+.+  ++++-...
T Consensus       110 ~~~~~~~~~~~~P~~l~----vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         110 KRKTLFRENGSKPRAIV----VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             SEEEEEECTTCCEEEEE----EETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEcCCCCCcceEE----EEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence            43333332222222233    356544355543 2345676667654433333322 3457899999876  44454667


Q ss_pred             CeEEEEeCCC
Q 016134          382 GMLGVWKLLA  391 (394)
Q Consensus       382 g~I~vWd~~~  391 (394)
                      +.|...++..
T Consensus       186 ~~I~~~~~dG  195 (266)
T d1ijqa1         186 HSISSIDVNG  195 (266)
T ss_dssp             TEEEEEETTS
T ss_pred             CEEEEEECCC
Confidence            7888777754