Citrus Sinensis ID: 016156
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 394 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9C4 | 477 | Enolase 1, chloroplastic | yes | no | 0.913 | 0.754 | 0.865 | 0.0 | |
| Q54RK5 | 434 | Enolase A OS=Dictyosteliu | yes | no | 0.868 | 0.788 | 0.667 | 1e-136 | |
| P15007 | 500 | Enolase OS=Drosophila mel | yes | no | 0.951 | 0.75 | 0.640 | 1e-136 | |
| P15429 | 434 | Beta-enolase OS=Rattus no | yes | no | 0.868 | 0.788 | 0.677 | 1e-135 | |
| P25704 | 434 | Beta-enolase OS=Oryctolag | yes | no | 0.868 | 0.788 | 0.677 | 1e-135 | |
| P26300 | 444 | Enolase OS=Solanum lycope | N/A | no | 0.875 | 0.777 | 0.674 | 1e-135 | |
| Q3ZC09 | 434 | Beta-enolase OS=Bos tauru | yes | no | 0.868 | 0.788 | 0.674 | 1e-135 | |
| P21550 | 434 | Beta-enolase OS=Mus muscu | yes | no | 0.868 | 0.788 | 0.674 | 1e-135 | |
| P13929 | 434 | Beta-enolase OS=Homo sapi | yes | no | 0.868 | 0.788 | 0.668 | 1e-134 | |
| O57391 | 434 | Gamma-enolase OS=Gallus g | yes | no | 0.868 | 0.788 | 0.662 | 1e-133 |
| >sp|Q9C9C4|ENO1_ARATH Enolase 1, chloroplastic OS=Arabidopsis thaliana GN=ENO1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/363 (86%), Positives = 339/363 (93%), Gaps = 3/363 (0%)
Query: 27 YRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIY 86
+R VQCSV + +VK VKARQIIDSRGNPTVEVDLITDDL+RSAVPSGASTGIY
Sbjct: 35 FRRSGVQCSVVA---KECRVKGVKARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIY 91
Query: 87 EALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKI 146
EALELRDGDKSVYGGKGVL A+KNIN+++ PKL+GVD+R+QA+VDA+MLE+DGTPNKSK+
Sbjct: 92 EALELRDGDKSVYGGKGVLQAIKNINELVAPKLIGVDVRNQADVDALMLELDGTPNKSKL 151
Query: 147 GANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQ 206
GANAILGVSLSVCRAGAGAKGVPLYKHIQE SGTKELVMPVPAFNVINGGSHAGN+LAMQ
Sbjct: 152 GANAILGVSLSVCRAGAGAKGVPLYKHIQETSGTKELVMPVPAFNVINGGSHAGNSLAMQ 211
Query: 207 EFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVL 266
EFMILPVGATSF+EA +MGSEVYH LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVL
Sbjct: 212 EFMILPVGATSFSEAFQMGSEVYHTLKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVL 271
Query: 267 LTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV 326
L DAIEKAGYTGKI IGMDVAASEFF KDG YDLNFKKQPNDGAHVLSA+SL DLY+EF+
Sbjct: 272 LIDAIEKAGYTGKIKIGMDVAASEFFMKDGRYDLNFKKQPNDGAHVLSAESLADLYREFI 331
Query: 327 RDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI+K+SCN LLLKV
Sbjct: 332 KDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIKKQSCNALLLKV 391
Query: 387 NHL 389
N +
Sbjct: 392 NQI 394
|
Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|Q54RK5|ENOA_DICDI Enolase A OS=Dictyostelium discoideum GN=enoA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/349 (66%), Positives = 287/349 (82%), Gaps = 7/349 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITD-----DLFRSAVPSGASTGIYEALELRDGDKSVYG 100
+KS+KAR+I++SRGNPTVEVDL T+ FR+AVPSGASTGIYEA+ELRDGDKS Y
Sbjct: 4 IKSIKAREILNSRGNPTVEVDLYTEKDGVVSSFRAAVPSGASTGIYEAVELRDGDKSRYL 63
Query: 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCR 160
GKGVL A+KNI +++ P ++G + DQA +D +M+++DGTPNK K+GANAIL VSL+VCR
Sbjct: 64 GKGVLKAIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLGANAILAVSLAVCR 123
Query: 161 AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
AGA + +PLYK+I E++GTK + +PVPAFNVINGGSHAGN LAMQEFMILPVGA F E
Sbjct: 124 AGAADRNLPLYKYISEIAGTK-MRLPVPAFNVINGGSHAGNKLAMQEFMILPVGAKDFNE 182
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
A RMGSEVYH LK +I +YGQDA NVGDEGGFAP +Q N+EGL LL AIEKAGYTG +
Sbjct: 183 AYRMGSEVYHNLKNVISGRYGQDAINVGDEGGFAPPIQSNKEGLELLKLAIEKAGYTGLV 242
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
IGMD AASEF ++G YDL+FK + NDG+ V+S + LGDLY+EF++++PI+SIEDPFDQ
Sbjct: 243 KIGMDCAASEFKVENG-YDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQ 301
Query: 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
DDW S+ L +SVDIQ+VGDDLLVTNP+RI I+KK+CN LLLKVN +
Sbjct: 302 DDWESYTKLTASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQI 350
|
Dictyostelium discoideum (taxid: 44689) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P15007|ENO_DROME Enolase OS=Drosophila melanogaster GN=Eno PE=1 SV=2 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/381 (64%), Positives = 301/381 (79%), Gaps = 6/381 (1%)
Query: 12 PLFSSKLKQSTPPRSYRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITD- 70
P F SK S ++ ++++ S S+ +K++KARQI DSRGNPTVEVDL T+
Sbjct: 38 PRFRSKSAVSQLSSGFKFVQIRKSTCD--SNEMTIKAIKARQIYDSRGNPTVEVDLTTEL 95
Query: 71 DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV--GVDIRDQA 128
LFR+AVPSGASTG++EALELRD DK+ Y GK VL AV ++ND LGP+L+ +D+ DQA
Sbjct: 96 GLFRAAVPSGASTGVHEALELRDNDKANYHGKSVLKAVGHVNDTLGPELIKANLDVVDQA 155
Query: 129 EVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188
+D M+++DGT NKSK GANAILGVSL+V +AGA KGVPLYKHI +L+G KE+++PVP
Sbjct: 156 SIDNFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLYKHIADLAGNKEIILPVP 215
Query: 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVG 248
AFNVINGGSHAGN LAMQEFMILP GATSF EA++MGSEVYH LK +IK K+G DA VG
Sbjct: 216 AFNVINGGSHAGNKLAMQEFMILPTGATSFTEAMKMGSEVYHHLKNVIKAKFGLDATAVG 275
Query: 249 DEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPND 308
DEGGFAPN+Q N+E L L++DAI KAGYTGKI IGMDVAASEF+ KDG YDL+FK + +D
Sbjct: 276 DEGGFAPNIQSNKEALNLISDAIAKAGYTGKIEIGMDVAASEFY-KDGQYDLDFKNEKSD 334
Query: 309 GAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPK 368
+ L A L +LY+EF++DFPIVSIEDPFDQD W +W++L DIQ+VGDDL VTNPK
Sbjct: 335 KSQWLPADKLANLYQEFIKDFPIVSIEDPFDQDHWEAWSNLTGCTDIQIVGDDLTVTNPK 394
Query: 369 RIAEAIQKKSCNGLLLKVNHL 389
RIA A++KK+CN LLLKVN +
Sbjct: 395 RIATAVEKKACNCLLLKVNQI 415
|
Drosophila melanogaster (taxid: 7227) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P15429|ENOB_RAT Beta-enolase OS=Rattus norvegicus GN=Eno3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/347 (67%), Positives = 287/347 (82%), Gaps = 5/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGV
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 62
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV++IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A KGVPLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ I
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ ++G YDL+F K P+D A +S + LG+LYK F++++P+VSIEDPFDQDD
Sbjct: 243 GMDVAASEFY-RNGKYDLDF-KSPDDPARHISGEKLGELYKSFIKNYPVVSIEDPFDQDD 300
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
W++W S S VDIQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 301 WATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
Appears to have a function in striated muscle development and regeneration. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P25704|ENOB_RABIT Beta-enolase OS=Oryctolagus cuniculus GN=ENO3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/347 (67%), Positives = 286/347 (82%), Gaps = 5/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGV
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 62
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV++IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A KGVPLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNHDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAM 182
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ I
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF ++G YDL+F K P+D A ++ Q LG+LYK F++++P+VSIEDPFDQDD
Sbjct: 243 GMDVAASEFH-RNGKYDLDF-KSPDDPARHITGQKLGELYKSFIKNYPVVSIEDPFDQDD 300
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
W++W S S VDIQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 301 WATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
Appears to have a function in striated muscle development and regeneration. Oryctolagus cuniculus (taxid: 9986) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P26300|ENO_SOLLC Enolase OS=Solanum lycopersicum GN=PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/356 (67%), Positives = 289/356 (81%), Gaps = 11/356 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDL-ITDDLF-RSAVPSGASTGIYEALELRDGDKSVYGG 101
A +KS+KARQI DSRGNPTVEVD+ I++ +F R+AVPSGASTGIYEALELRDG S Y G
Sbjct: 2 ATIKSIKARQIFDSRGNPTVEVDVHISNGVFARAAVPSGASTGIYEALELRDGG-SDYLG 60
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIML-EIDGTPN-----KSKIGANAILGVS 155
KGV AV N+N I+GP LVG D DQ +D M+ ++DGT N K K+GANAIL VS
Sbjct: 61 KGVSKAVNNVNSIIGPALVGKDPTDQTGLDNFMVHQLDGTQNEWGWCKEKLGANAILAVS 120
Query: 156 LSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA 215
L+VC+AGA + VPLYKHI +L+G K+LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA
Sbjct: 121 LAVCKAGAAVRNVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 180
Query: 216 TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275
+F EA++MG EVYH LK +IK+KYGQDA NVGDEGGFAPN+Q+N+EGL LL AIEKAG
Sbjct: 181 ANFKEAMKMGCEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAG 240
Query: 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
YTGK+ IGMDVAASEF+ KD +YDLNFK++ NDG+ +S L DLYK FV ++PIVSIE
Sbjct: 241 YTGKVVIGMDVAASEFYGKDKSYDLNFKEESNDGSQKISGDQLKDLYKSFVSEYPIVSIE 300
Query: 336 DPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
DPFDQDDW ++A L + + +Q+VGDDLLVTNPKR+A+AI +K+CN LLLKVN +
Sbjct: 301 DPFDQDDWETYAKLTAEIGEQVQIVGDDLLVTNPKRVAKAIAEKTCNALLLKVNQI 356
|
Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q3ZC09|ENOB_BOVIN Beta-enolase OS=Bos taurus GN=ENO3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/347 (67%), Positives = 287/347 (82%), Gaps = 5/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGV
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 62
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV++IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A KGVPLY+HI +L+G EL++PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPELILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAM 182
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ I
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ ++G YDL+F K P+D A +S + LG+LYK F++++P+VSIEDPFDQDD
Sbjct: 243 GMDVAASEFY-RNGKYDLDF-KSPDDPARHISGEKLGELYKNFIKNYPVVSIEDPFDQDD 300
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
W++W S S V+IQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 301 WATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
Appears to have a function in striated muscle development and regeneration. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P21550|ENOB_MOUSE Beta-enolase OS=Mus musculus GN=Eno3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/347 (67%), Positives = 287/347 (82%), Gaps = 5/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDK+ Y GKGV
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKARYLGKGV 62
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV++IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 63 LKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A KGVPLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ I
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ ++G YDL+F K P+D A +S + LG+LYK F++++P+VSIEDPFDQDD
Sbjct: 243 GMDVAASEFY-RNGKYDLDF-KSPDDPARHISGEKLGELYKNFIQNYPVVSIEDPFDQDD 300
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
W++W S S VDIQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 301 WATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
Appears to have a function in striated muscle development and regeneration. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P13929|ENOB_HUMAN Beta-enolase OS=Homo sapiens GN=ENO3 PE=1 SV=5 | Back alignment and function description |
|---|
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/347 (66%), Positives = 287/347 (82%), Gaps = 5/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDK Y GKGV
Sbjct: 3 MQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKGRYLGKGV 62
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV+NIN+ LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 63 LKAVENINNTLGPALLQKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAG 122
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A KGVPLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+
Sbjct: 123 AAEKGVPLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAM 182
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ I
Sbjct: 183 RIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVI 242
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ ++G YDL+F K P+D A ++ + LG+LYK F++++P+VSIEDPFDQDD
Sbjct: 243 GMDVAASEFY-RNGKYDLDF-KSPDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDD 300
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
W++W S S V+IQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 301 WATWTSFLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
Appears to have a function in striated muscle development and regeneration. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O57391|ENOG_CHICK Gamma-enolase OS=Gallus gallus GN=ENO2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/347 (66%), Positives = 284/347 (81%), Gaps = 5/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
V+ + AR+I+DSRGNPTVEVDL T +FR+AVPSGASTGIYEALELRD DKS + GKGV
Sbjct: 3 VERIHAREILDSRGNPTVEVDLYTHKGMFRAAVPSGASTGIYEALELRDNDKSRFLGKGV 62
Query: 105 LNAVKNINDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV +IN + P +VG + + DQ ++D +MLE+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 63 LQAVDHINSTVAPAIVGSGLSVVDQEKIDNLMLEMDGTENKSKFGANAILGVSLAVCKAG 122
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A K VPLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+
Sbjct: 123 AAEKDVPLYRHIADLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 182
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LK +IKEKYG+DA NVGDEGGFAPN+ +N E L LL +AI+KAGYT KI I
Sbjct: 183 RIGAEVYHNLKSVIKEKYGKDATNVGDEGGFAPNILENSEALELLKEAIDKAGYTDKIVI 242
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ +DG YDL+F K P+D + +SA LGDLY+ FVR +P++SIEDPFDQDD
Sbjct: 243 GMDVAASEFY-RDGKYDLDF-KSPDDPSRYISADELGDLYQSFVRAYPVLSIEDPFDQDD 300
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
W +W+ ++V IQ+VGDDL VTNPKRI A+++K+CN LLLKVN +
Sbjct: 301 WEAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQI 347
|
Gallus gallus (taxid: 9031) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 394 | ||||||
| 317106652 | 491 | JHL10I11.2 [Jatropha curcas] | 0.984 | 0.790 | 0.842 | 0.0 | |
| 255541894 | 490 | enolase, putative [Ricinus communis] gi| | 0.961 | 0.773 | 0.844 | 0.0 | |
| 225455784 | 472 | PREDICTED: enolase 1, chloroplastic-like | 0.926 | 0.773 | 0.879 | 0.0 | |
| 449440860 | 492 | PREDICTED: enolase 1, chloroplastic-like | 0.979 | 0.784 | 0.806 | 0.0 | |
| 133711722 | 489 | plastid enolase [Helianthus annuus] | 0.908 | 0.732 | 0.888 | 0.0 | |
| 356566054 | 489 | PREDICTED: enolase 1, chloroplastic-like | 0.977 | 0.787 | 0.822 | 0.0 | |
| 15221107 | 477 | enolase 1 [Arabidopsis thaliana] gi|7530 | 0.913 | 0.754 | 0.865 | 0.0 | |
| 297842157 | 477 | hypothetical protein ARALYDRAFT_895270 [ | 0.913 | 0.754 | 0.859 | 0.0 | |
| 356519186 | 452 | PREDICTED: enolase 1, chloroplastic-like | 0.878 | 0.765 | 0.907 | 0.0 | |
| 224121328 | 430 | predicted protein [Populus trichocarpa] | 0.862 | 0.790 | 0.897 | 1e-180 |
| >gi|317106652|dbj|BAJ53156.1| JHL10I11.2 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/400 (84%), Positives = 361/400 (90%), Gaps = 12/400 (3%)
Query: 2 ASSLTNPTARPLFSSKLKQST------PPRSYRPMRVQCSVASTASSSAKV------KSV 49
A++ N ++P FSSK + ST PP R + V+ SV S+AK+ KSV
Sbjct: 9 ATTTGNLLSKPFFSSKPQSSTSTSIPFPPLKSRSLVVRNSVTVAPPSAAKIAKECKIKSV 68
Query: 50 KARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109
KARQIIDSRGNPTVEVDLITDDL+RSAVPSGASTGIYEALELRDGDKSVYGGKGVL AVK
Sbjct: 69 KARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIYEALELRDGDKSVYGGKGVLKAVK 128
Query: 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVP 169
NINDILGPKL+GVD+R+Q +VDAIML+IDGTPNKSK+GANAILGVSLS+CRAGAGAKG+P
Sbjct: 129 NINDILGPKLIGVDVRNQDDVDAIMLDIDGTPNKSKLGANAILGVSLSICRAGAGAKGLP 188
Query: 170 LYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVY 229
LYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVY
Sbjct: 189 LYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVY 248
Query: 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAAS 289
H LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVLL DAIEKAGYTGKI IGMDVAAS
Sbjct: 249 HTLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTGKIKIGMDVAAS 308
Query: 290 EFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349
EF TKDG YDLNFKKQPNDGAHVLSAQ+LG+LYKEF++DFPIVSIEDPFDQDDWSSWASL
Sbjct: 309 EFLTKDGKYDLNFKKQPNDGAHVLSAQNLGELYKEFIKDFPIVSIEDPFDQDDWSSWASL 368
Query: 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
QSSVDIQLVGDDLLVTNPKRIAEAIQKK+CNGLLLKVN +
Sbjct: 369 QSSVDIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQI 408
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541894|ref|XP_002512011.1| enolase, putative [Ricinus communis] gi|223549191|gb|EEF50680.1| enolase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/393 (84%), Positives = 352/393 (89%), Gaps = 14/393 (3%)
Query: 11 RPLFSSK---LKQSTP-----PRSYRPMRVQCSVA------STASSSAKVKSVKARQIID 56
+P FSS+ TP P R V+ SVA + + KVKSVKARQIID
Sbjct: 15 KPFFSSRPQSFSSPTPTSLSLPFKSRSFVVRNSVAVAPFSATKIAKECKVKSVKARQIID 74
Query: 57 SRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILG 116
SRGNPTVEVDL+TDDL+RSAVPSGASTGIYEALELRDGDKSVYGGKGVL AVKNINDILG
Sbjct: 75 SRGNPTVEVDLVTDDLYRSAVPSGASTGIYEALELRDGDKSVYGGKGVLQAVKNINDILG 134
Query: 117 PKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQE 176
PKL+GVD+R+Q +VDAIML+IDGTPNKSK+GANAILGVSLS+CRAGAGAKG+PLYKHIQ+
Sbjct: 135 PKLIGVDVRNQDDVDAIMLDIDGTPNKSKLGANAILGVSLSICRAGAGAKGMPLYKHIQD 194
Query: 177 LSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGII 236
LSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH LKGII
Sbjct: 195 LSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGII 254
Query: 237 KEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296
K KYGQDACNVGDEGGFAPNVQDNREGLVLL DAIEKAGYTGKI IGMDVAASEF TKDG
Sbjct: 255 KSKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYTGKIKIGMDVAASEFLTKDG 314
Query: 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQ 356
YDLNFKKQPNDGA VLSAQSLG+LY+EFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQ
Sbjct: 315 KYDLNFKKQPNDGARVLSAQSLGELYREFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQ 374
Query: 357 LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
LVGDDLLVTNPKRIAEAIQKK+CNGLLLKVN +
Sbjct: 375 LVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQI 407
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455784|ref|XP_002274334.1| PREDICTED: enolase 1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/372 (87%), Positives = 342/372 (91%), Gaps = 7/372 (1%)
Query: 23 PPRSYRPMRVQCSVASTA-----SSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAV 77
PPR RP V+CSVA S VKSVKARQIIDSRGNPTVEVDL+TD+L+RSAV
Sbjct: 20 PPR--RPFTVRCSVAVAPAAARASKEHLVKSVKARQIIDSRGNPTVEVDLVTDNLYRSAV 77
Query: 78 PSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEI 137
PSGASTGIYEALELRDGDK+VYGGKGVLNAV NIN +L PKLVG+D+R+QAEVDAIMLE
Sbjct: 78 PSGASTGIYEALELRDGDKNVYGGKGVLNAVSNINHLLAPKLVGLDVRNQAEVDAIMLEF 137
Query: 138 DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS 197
DGTPNKSK+GANA LGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS
Sbjct: 138 DGTPNKSKLGANATLGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS 197
Query: 198 HAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNV 257
HAGNNLAMQEFMILPVGATSFAEALRMGSEVYH LKGIIK KYGQDACNVGDEGGFAPNV
Sbjct: 198 HAGNNLAMQEFMILPVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNV 257
Query: 258 QDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQS 317
QDNREGLVLL DAIEKAGYTGKI IGMDVAASEFFTKDG YDLNFKKQPNDGAHV SAQS
Sbjct: 258 QDNREGLVLLMDAIEKAGYTGKIKIGMDVAASEFFTKDGKYDLNFKKQPNDGAHVRSAQS 317
Query: 318 LGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377
L +LYKEFV+DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI+KK
Sbjct: 318 LCELYKEFVKDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIEKK 377
Query: 378 SCNGLLLKVNHL 389
+CN LLLKVN +
Sbjct: 378 ACNALLLKVNQI 389
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440860|ref|XP_004138202.1| PREDICTED: enolase 1, chloroplastic-like [Cucumis sativus] gi|449532822|ref|XP_004173377.1| PREDICTED: enolase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/409 (80%), Positives = 356/409 (87%), Gaps = 23/409 (5%)
Query: 3 SSLTNPTARPLFSSKLKQSTPPRSY-------------RPMR---VQCSVASTASSSA-- 44
+SL +P L + L S PP+S+ +P+R ++CSVA S S
Sbjct: 2 ASLPSPHTMNLLNKSLSLS-PPQSFIALIPSSSSSSSSKPLRSPTIRCSVAVAPSVSTNV 60
Query: 45 ----KVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYG 100
K+KS+KARQIIDSRGNPTVEVDLITDDL+RSAVPSGASTGIYEALELRDGDK+VYG
Sbjct: 61 SKEFKLKSLKARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIYEALELRDGDKTVYG 120
Query: 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCR 160
GKGVL AVKNINDIL PKLVGVD+R+Q EVDAIMLEIDGTPNKS++GANAILGVSLSVCR
Sbjct: 121 GKGVLTAVKNINDILAPKLVGVDVRNQEEVDAIMLEIDGTPNKSELGANAILGVSLSVCR 180
Query: 161 AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
AGAGAKG+PLY+HIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA+SFAE
Sbjct: 181 AGAGAKGLPLYRHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGASSFAE 240
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALRMGSEVYH LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVLL DAIEKAGYTGKI
Sbjct: 241 ALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTGKI 300
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
IGMDVAASEFFT +G YDLNFKKQPNDGAHV SA LG+LYK+FV+DFPIVSIEDPFDQ
Sbjct: 301 KIGMDVAASEFFTAEGKYDLNFKKQPNDGAHVHSAHGLGELYKQFVKDFPIVSIEDPFDQ 360
Query: 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAE IQKK+CN LLLKVN +
Sbjct: 361 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEGIQKKACNALLLKVNQI 409
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|133711722|gb|ABO36543.1| plastid enolase [Helianthus annuus] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/358 (88%), Positives = 336/358 (93%)
Query: 32 VQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALEL 91
V S + +A+ S+ VKSVKARQIIDSRGNPTVEVDL+TD L+RSAVPSGASTGIYEALEL
Sbjct: 49 VAQSPSVSAAKSSTVKSVKARQIIDSRGNPTVEVDLVTDGLYRSAVPSGASTGIYEALEL 108
Query: 92 RDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAI 151
RDGDKSVYGGKGVLNAVKNIN++LGPKL+GVD+R+QAE D IMLEIDGTPNKSK+GANAI
Sbjct: 109 RDGDKSVYGGKGVLNAVKNINEVLGPKLIGVDVRNQAEFDGIMLEIDGTPNKSKLGANAI 168
Query: 152 LGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMIL 211
LGVSLS CRAGAGAK +PLYKHIQE+SGTKELVMPVPAFNVINGGSHAGNNLAMQEFMIL
Sbjct: 169 LGVSLSACRAGAGAKSIPLYKHIQEISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMIL 228
Query: 212 PVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAI 271
PVGATSFAEALRMGSEVYH LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVLL DAI
Sbjct: 229 PVGATSFAEALRMGSEVYHTLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAI 288
Query: 272 EKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPI 331
EKAGYTGKI IGMDVAASEF TKDG YDLNFKKQPNDGAHVLSA SLGDLY+EFVRDFPI
Sbjct: 289 EKAGYTGKIKIGMDVAASEFLTKDGKYDLNFKKQPNDGAHVLSAPSLGDLYREFVRDFPI 348
Query: 332 VSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
VSIEDPFDQDDW+SW SLQSSVDIQLVGDDLLVTNPKRIAE IQKK+CN LLLKVN +
Sbjct: 349 VSIEDPFDQDDWTSWTSLQSSVDIQLVGDDLLVTNPKRIAEGIQKKACNALLLKVNQI 406
|
Source: Helianthus annuus Species: Helianthus annuus Genus: Helianthus Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566054|ref|XP_003551250.1| PREDICTED: enolase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/395 (82%), Positives = 355/395 (89%), Gaps = 10/395 (2%)
Query: 2 ASSLTNPTARPLFSSKLKQSTPPR-SYRPMRVQCSVAS------TASSSAKVKSVKARQI 54
+SS + T RPL + QS P R S R + V+ + TA+ +VKSVKARQI
Sbjct: 15 SSSSSFVTPRPL---RTTQSIPVRNSRRSIAVRAAATEAPVATITAARECRVKSVKARQI 71
Query: 55 IDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDI 114
+DSRGNPTVEVDL+TD LFR+AVPSGASTGIYEALELRDGDKSVYGGKGVLNAV+NIN++
Sbjct: 72 VDSRGNPTVEVDLVTDGLFRAAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVRNINEV 131
Query: 115 LGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHI 174
L P LVGVD+R+QA+VDAIMLEIDGTPNKSK+GANAILGVSLSVCRAGAGAKGVPLY+HI
Sbjct: 132 LAPILVGVDVRNQADVDAIMLEIDGTPNKSKLGANAILGVSLSVCRAGAGAKGVPLYRHI 191
Query: 175 QELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKG 234
QE+SGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH+LKG
Sbjct: 192 QEISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHVLKG 251
Query: 235 IIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTK 294
IIK KYGQDACNVGDEGGFAPNVQDNREGLVLL DAI+KAGYTGKI IGMDVAASEF+TK
Sbjct: 252 IIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIDKAGYTGKIKIGMDVAASEFYTK 311
Query: 295 DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD 354
DG YDLNFKKQPNDGAHV SAQSLG LYK+FV++FPIVSIEDPFDQDDW SWASL +SVD
Sbjct: 312 DGKYDLNFKKQPNDGAHVHSAQSLGQLYKDFVKEFPIVSIEDPFDQDDWGSWASLLASVD 371
Query: 355 IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
IQLVGDDLLVTNPKRIAEAI+KK+CNGLLLKVN +
Sbjct: 372 IQLVGDDLLVTNPKRIAEAIKKKACNGLLLKVNQI 406
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221107|ref|NP_177543.1| enolase 1 [Arabidopsis thaliana] gi|75308916|sp|Q9C9C4.1|ENO1_ARATH RecName: Full=Enolase 1, chloroplastic; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; Flags: Precursor gi|12325134|gb|AAG52510.1|AC016662_4 putative enolase; 31277-33713 [Arabidopsis thaliana] gi|14334610|gb|AAK59483.1| putative enolase [Arabidopsis thaliana] gi|17065640|gb|AAL33814.1| putative enolase [Arabidopsis thaliana] gi|332197418|gb|AEE35539.1| enolase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/363 (86%), Positives = 339/363 (93%), Gaps = 3/363 (0%)
Query: 27 YRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIY 86
+R VQCSV + +VK VKARQIIDSRGNPTVEVDLITDDL+RSAVPSGASTGIY
Sbjct: 35 FRRSGVQCSVVA---KECRVKGVKARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIY 91
Query: 87 EALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKI 146
EALELRDGDKSVYGGKGVL A+KNIN+++ PKL+GVD+R+QA+VDA+MLE+DGTPNKSK+
Sbjct: 92 EALELRDGDKSVYGGKGVLQAIKNINELVAPKLIGVDVRNQADVDALMLELDGTPNKSKL 151
Query: 147 GANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQ 206
GANAILGVSLSVCRAGAGAKGVPLYKHIQE SGTKELVMPVPAFNVINGGSHAGN+LAMQ
Sbjct: 152 GANAILGVSLSVCRAGAGAKGVPLYKHIQETSGTKELVMPVPAFNVINGGSHAGNSLAMQ 211
Query: 207 EFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVL 266
EFMILPVGATSF+EA +MGSEVYH LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVL
Sbjct: 212 EFMILPVGATSFSEAFQMGSEVYHTLKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVL 271
Query: 267 LTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV 326
L DAIEKAGYTGKI IGMDVAASEFF KDG YDLNFKKQPNDGAHVLSA+SL DLY+EF+
Sbjct: 272 LIDAIEKAGYTGKIKIGMDVAASEFFMKDGRYDLNFKKQPNDGAHVLSAESLADLYREFI 331
Query: 327 RDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+DFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI+K+SCN LLLKV
Sbjct: 332 KDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIKKQSCNALLLKV 391
Query: 387 NHL 389
N +
Sbjct: 392 NQI 394
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842157|ref|XP_002888960.1| hypothetical protein ARALYDRAFT_895270 [Arabidopsis lyrata subsp. lyrata] gi|297334801|gb|EFH65219.1| hypothetical protein ARALYDRAFT_895270 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/363 (85%), Positives = 340/363 (93%), Gaps = 3/363 (0%)
Query: 27 YRPMRVQCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIY 86
+R VQCSV + +VK VKARQIIDSRGNPTVEVDLITDDL+RSAVPSGASTGIY
Sbjct: 35 FRRSGVQCSVVA---KECRVKGVKARQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIY 91
Query: 87 EALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKI 146
EALELRDGDKSVYGGKGVL A++NIN+++ PKL+GVD+R+QA+VDA+MLE+DGTPNKSK+
Sbjct: 92 EALELRDGDKSVYGGKGVLQAIRNINELVAPKLIGVDVRNQADVDALMLELDGTPNKSKL 151
Query: 147 GANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQ 206
GANAILGVSLSVCRAGAGAKGVPLYKHIQE+SGTKELVMPVPAFNVINGGSHAGN+LAMQ
Sbjct: 152 GANAILGVSLSVCRAGAGAKGVPLYKHIQEISGTKELVMPVPAFNVINGGSHAGNSLAMQ 211
Query: 207 EFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVL 266
EFMILPVGATSF+EA +MGSEVYH LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVL
Sbjct: 212 EFMILPVGATSFSEAFQMGSEVYHTLKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVL 271
Query: 267 LTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV 326
L DAIEKAGYTGKI IGMDVAASEFF KDG YDLNFKKQPNDGAHVLSA+SL DLY+EF+
Sbjct: 272 LIDAIEKAGYTGKIKIGMDVAASEFFMKDGRYDLNFKKQPNDGAHVLSAESLADLYREFI 331
Query: 327 RDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKV 386
+DFPIVSIEDPFDQDDWSSWASLQ+SVDIQLVGDDLLVTNPKRIAEAI++KSCN LLLKV
Sbjct: 332 KDFPIVSIEDPFDQDDWSSWASLQASVDIQLVGDDLLVTNPKRIAEAIKRKSCNALLLKV 391
Query: 387 NHL 389
N +
Sbjct: 392 NQI 394
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519186|ref|XP_003528254.1| PREDICTED: enolase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/346 (90%), Positives = 332/346 (95%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103
KVKSVKARQI+DSRGNPTVEVDL+ + LFRSAVPSGASTGIYEALELRDGDKSVYGGKG
Sbjct: 24 CKVKSVKARQIVDSRGNPTVEVDLVANGLFRSAVPSGASTGIYEALELRDGDKSVYGGKG 83
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
VLNAV+NIN++L PKLVGVD+R+QA+VDAIMLEIDGTPNKSK+GANAILGVSLSVCRAGA
Sbjct: 84 VLNAVRNINEVLAPKLVGVDVRNQADVDAIMLEIDGTPNKSKLGANAILGVSLSVCRAGA 143
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
GAKGVPLYKHIQE+SGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA R
Sbjct: 144 GAKGVPLYKHIQEISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAFR 203
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283
MGSEVYH+LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVLL DAIEKAGYTGKI IG
Sbjct: 204 MGSEVYHVLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYTGKIKIG 263
Query: 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343
MDVAASEF+TKDG YDLNFKKQPNDGAHV SAQSLG LYK+FV++FPIVSIEDPFDQDDW
Sbjct: 264 MDVAASEFYTKDGKYDLNFKKQPNDGAHVHSAQSLGQLYKDFVKEFPIVSIEDPFDQDDW 323
Query: 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
SWASL SSVDIQLVGDDLLVTNPKRIAEAIQKK+CNGLLLKVN +
Sbjct: 324 GSWASLLSSVDIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQI 369
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121328|ref|XP_002318555.1| predicted protein [Populus trichocarpa] gi|222859228|gb|EEE96775.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 307/342 (89%), Positives = 331/342 (96%), Gaps = 2/342 (0%)
Query: 49 VKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNA 107
VKARQIIDSRGNPTVEVDL+TDD L+RSAVPSGASTGIYEALELRDGDKSVYGGKGVL+A
Sbjct: 7 VKARQIIDSRGNPTVEVDLVTDDQLYRSAVPSGASTGIYEALELRDGDKSVYGGKGVLSA 66
Query: 108 VKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKG 167
V+N+N+ LGPKL+GVD+R+QA+VDAIML+IDGTPNK+K+GANAILGVSLSVCRAGAGAKG
Sbjct: 67 VQNVNNFLGPKLLGVDVRNQADVDAIMLDIDGTPNKAKLGANAILGVSLSVCRAGAGAKG 126
Query: 168 VPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE 227
VPLYKHIQE+SGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGAT+FAEALRMGSE
Sbjct: 127 VPLYKHIQEISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATNFAEALRMGSE 186
Query: 228 VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVA 287
VYH LK II++KYGQDACNVGDEGGFAPNVQDNREGLVLL DAIEKAGYTGKI IGMDVA
Sbjct: 187 VYHTLKKIIEKKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYTGKIKIGMDVA 246
Query: 288 ASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347
ASEF KDG YDLNFK QPNDGAHVLSAQSLGDLYK+FV++FPIVSIEDPFDQDDW+SWA
Sbjct: 247 ASEFL-KDGKYDLNFKNQPNDGAHVLSAQSLGDLYKDFVKEFPIVSIEDPFDQDDWNSWA 305
Query: 348 SLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
SLQSSVDIQ+VGDDLLVTNPKRIAEAIQKK+CNGLLLKVN +
Sbjct: 306 SLQSSVDIQIVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQI 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 394 | ||||||
| TAIR|locus:2031476 | 477 | ENO1 "enolase 1" [Arabidopsis | 0.857 | 0.708 | 0.896 | 1.2e-163 | |
| FB|FBgn0000579 | 500 | Eno "Enolase" [Drosophila mela | 0.855 | 0.674 | 0.686 | 1.9e-124 | |
| RGD|2555 | 434 | Eno3 "enolase 3, beta, muscle" | 0.852 | 0.774 | 0.686 | 7.2e-123 | |
| UNIPROTKB|Q3ZC09 | 434 | ENO3 "Beta-enolase" [Bos tauru | 0.852 | 0.774 | 0.683 | 1.5e-122 | |
| MGI|MGI:95395 | 434 | Eno3 "enolase 3, beta muscle" | 0.852 | 0.774 | 0.683 | 1.9e-122 | |
| UNIPROTKB|P13929 | 434 | ENO3 "Beta-enolase" [Homo sapi | 0.852 | 0.774 | 0.677 | 3.1e-122 | |
| UNIPROTKB|E2R5B2 | 434 | ENO3 "Uncharacterized protein" | 0.852 | 0.774 | 0.680 | 5.1e-122 | |
| UNIPROTKB|F1NG74 | 434 | ENO2 "Gamma-enolase" [Gallus g | 0.852 | 0.774 | 0.674 | 6.5e-122 | |
| DICTYBASE|DDB_G0283137 | 434 | enoA "enolase A" [Dictyosteliu | 0.852 | 0.774 | 0.667 | 1.3e-121 | |
| UNIPROTKB|F1RFY2 | 434 | ENO3 "Beta-enolase" [Sus scrof | 0.852 | 0.774 | 0.677 | 1.7e-121 |
| TAIR|locus:2031476 ENO1 "enolase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
Identities = 303/338 (89%), Positives = 325/338 (96%)
Query: 52 RQIIDSRGNPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111
RQIIDSRGNPTVEVDLITDDL+RSAVPSGASTGIYEALELRDGDKSVYGGKGVL A+KNI
Sbjct: 57 RQIIDSRGNPTVEVDLITDDLYRSAVPSGASTGIYEALELRDGDKSVYGGKGVLQAIKNI 116
Query: 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLY 171
N+++ PKL+GVD+R+QA+VDA+MLE+DGTPNKSK+GANAILGVSLSVCRAGAGAKGVPLY
Sbjct: 117 NELVAPKLIGVDVRNQADVDALMLELDGTPNKSKLGANAILGVSLSVCRAGAGAKGVPLY 176
Query: 172 KHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHI 231
KHIQE SGTKELVMPVPAFNVINGGSHAGN+LAMQEFMILPVGATSF+EA +MGSEVYH
Sbjct: 177 KHIQETSGTKELVMPVPAFNVINGGSHAGNSLAMQEFMILPVGATSFSEAFQMGSEVYHT 236
Query: 232 LKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEF 291
LKGIIK KYGQDACNVGDEGGFAPNVQDNREGLVLL DAIEKAGYTGKI IGMDVAASEF
Sbjct: 237 LKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTGKIKIGMDVAASEF 296
Query: 292 FTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQS 351
F KDG YDLNFKKQPNDGAHVLSA+SL DLY+EF++DFPIVSIEDPFDQDDWSSWASLQS
Sbjct: 297 FMKDGRYDLNFKKQPNDGAHVLSAESLADLYREFIKDFPIVSIEDPFDQDDWSSWASLQS 356
Query: 352 SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
SVDIQLVGDDLLVTNPKRIAEAI+K+SCN LLLKVN +
Sbjct: 357 SVDIQLVGDDLLVTNPKRIAEAIKKQSCNALLLKVNQI 394
|
|
| FB|FBgn0000579 Eno "Enolase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 234/341 (68%), Positives = 281/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
RQI DSRGNPTVEVDL T+ LFR+AVPSGASTG++EALELRD DK+ Y GK VL AV +
Sbjct: 76 RQIYDSRGNPTVEVDLTTELGLFRAAVPSGASTGVHEALELRDNDKANYHGKSVLKAVGH 135
Query: 111 INDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
+ND LGP+L+ +D+ DQA +D M+++DGT NKSK GANAILGVSL+V +AGA KGV
Sbjct: 136 VNDTLGPELIKANLDVVDQASIDNFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGV 195
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLYKHI +L+G KE+++PVPAFNVINGGSHAGN LAMQEFMILP GATSF EA++MGSEV
Sbjct: 196 PLYKHIADLAGNKEIILPVPAFNVINGGSHAGNKLAMQEFMILPTGATSFTEAMKMGSEV 255
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LK +IK K+G DA VGDEGGFAPN+Q N+E L L++DAI KAGYTGKI IGMDVAA
Sbjct: 256 YHHLKNVIKAKFGLDATAVGDEGGFAPNIQSNKEALNLISDAIAKAGYTGKIEIGMDVAA 315
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ KDG YDL+FK + +D + L A L +LY+EF++DFPIVSIEDPFDQD W +W++
Sbjct: 316 SEFY-KDGQYDLDFKNEKSDKSQWLPADKLANLYQEFIKDFPIVSIEDPFDQDHWEAWSN 374
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
L DIQ+VGDDL VTNPKRIA A++KK+CN LLLKVN +
Sbjct: 375 LTGCTDIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQI 415
|
|
| RGD|2555 Eno3 "enolase 3, beta, muscle" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 234/341 (68%), Positives = 283/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGVL AV++
Sbjct: 9 REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEH 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AGA KGV
Sbjct: 69 INKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+R+G+EV
Sbjct: 129 PLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ IGMDVAA
Sbjct: 189 YHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ ++G YDL+FK P+D A +S + LG+LYK F++++P+VSIEDPFDQDDW++W S
Sbjct: 249 SEFY-RNGKYDLDFKS-PDDPARHISGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTS 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
S VDIQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 307 FLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
|
| UNIPROTKB|Q3ZC09 ENO3 "Beta-enolase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 233/341 (68%), Positives = 283/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGVL AV++
Sbjct: 9 REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEH 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AGA KGV
Sbjct: 69 INKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G EL++PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+R+G+EV
Sbjct: 129 PLYRHIADLAGNPELILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ IGMDVAA
Sbjct: 189 YHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ ++G YDL+FK P+D A +S + LG+LYK F++++P+VSIEDPFDQDDW++W S
Sbjct: 249 SEFY-RNGKYDLDFKS-PDDPARHISGEKLGELYKNFIKNYPVVSIEDPFDQDDWATWTS 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
S V+IQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 307 FLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
|
| MGI|MGI:95395 Eno3 "enolase 3, beta muscle" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 233/341 (68%), Positives = 283/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDK+ Y GKGVL AV++
Sbjct: 9 REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKARYLGKGVLKAVEH 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AGA KGV
Sbjct: 69 INKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+R+G+EV
Sbjct: 129 PLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ IGMDVAA
Sbjct: 189 YHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ ++G YDL+FK P+D A +S + LG+LYK F++++P+VSIEDPFDQDDW++W S
Sbjct: 249 SEFY-RNGKYDLDFKS-PDDPARHISGEKLGELYKNFIQNYPVVSIEDPFDQDDWATWTS 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
S VDIQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 307 FLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
|
| UNIPROTKB|P13929 ENO3 "Beta-enolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 231/341 (67%), Positives = 283/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDK Y GKGVL AV+N
Sbjct: 9 REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKGRYLGKGVLKAVEN 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN+ LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AGA KGV
Sbjct: 69 INNTLGPALLQKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+R+G+EV
Sbjct: 129 PLYRHIADLAGNPDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ IGMDVAA
Sbjct: 189 YHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ ++G YDL+FK P+D A ++ + LG+LYK F++++P+VSIEDPFDQDDW++W S
Sbjct: 249 SEFY-RNGKYDLDFKS-PDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTS 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
S V+IQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 307 FLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
|
| UNIPROTKB|E2R5B2 ENO3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 232/341 (68%), Positives = 283/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGVL AV++
Sbjct: 9 REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEH 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AGA KGV
Sbjct: 69 INKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+R+G+EV
Sbjct: 129 PLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ IGMDVAA
Sbjct: 189 YHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ ++G YDL+FK P+D A ++ + LG+LYK F++++P+VSIEDPFDQDDW++W S
Sbjct: 249 SEFY-RNGKYDLDFKS-PDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTS 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
S V+IQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 307 FLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
|
| UNIPROTKB|F1NG74 ENO2 "Gamma-enolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 230/341 (67%), Positives = 281/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T +FR+AVPSGASTGIYEALELRD DKS + GKGVL AV +
Sbjct: 9 REILDSRGNPTVEVDLYTHKGMFRAAVPSGASTGIYEALELRDNDKSRFLGKGVLQAVDH 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN + P +VG + + DQ ++D +MLE+DGT NKSK GANAILGVSL+VC+AGA K V
Sbjct: 69 INSTVAPAIVGSGLSVVDQEKIDNLMLEMDGTENKSKFGANAILGVSLAVCKAGAAEKDV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+R+G+EV
Sbjct: 129 PLYRHIADLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LK +IKEKYG+DA NVGDEGGFAPN+ +N E L LL +AI+KAGYT KI IGMDVAA
Sbjct: 189 YHNLKSVIKEKYGKDATNVGDEGGFAPNILENSEALELLKEAIDKAGYTDKIVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ +DG YDL+FK P+D + +SA LGDLY+ FVRD+P+VSIEDPFDQDDW +W+
Sbjct: 249 SEFY-RDGKYDLDFKS-PDDPSRYISADELGDLYQSFVRDYPVVSIEDPFDQDDWEAWSK 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
++V IQ+VGDDL VTNPKRI A+++K+CN LLLKVN +
Sbjct: 307 FTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQI 347
|
|
| DICTYBASE|DDB_G0283137 enoA "enolase A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 229/343 (66%), Positives = 281/343 (81%)
Query: 52 RQIIDSRGNPTVEVDLITD-----DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106
R+I++SRGNPTVEVDL T+ FR+AVPSGASTGIYEA+ELRDGDKS Y GKGVL
Sbjct: 10 REILNSRGNPTVEVDLYTEKDGVVSSFRAAVPSGASTGIYEAVELRDGDKSRYLGKGVLK 69
Query: 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAK 166
A+KNI +++ P ++G + DQA +D +M+++DGTPNK K+GANAIL VSL+VCRAGA +
Sbjct: 70 AIKNILEVIQPAVIGKSVSDQAAIDKLMIDLDGTPNKGKLGANAILAVSLAVCRAGAADR 129
Query: 167 GVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS 226
+PLYK+I E++GTK + +PVPAFNVINGGSHAGN LAMQEFMILPVGA F EA RMGS
Sbjct: 130 NLPLYKYISEIAGTK-MRLPVPAFNVINGGSHAGNKLAMQEFMILPVGAKDFNEAYRMGS 188
Query: 227 EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDV 286
EVYH LK +I +YGQDA NVGDEGGFAP +Q N+EGL LL AIEKAGYTG + IGMD
Sbjct: 189 EVYHNLKNVISGRYGQDAINVGDEGGFAPPIQSNKEGLELLKLAIEKAGYTGLVKIGMDC 248
Query: 287 AASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSW 346
AASEF ++G YDL+FK + NDG+ V+S + LGDLY+EF++++PI+SIEDPFDQDDW S+
Sbjct: 249 AASEFKVENG-YDLDFKTKNNDGSAVISGEKLGDLYREFIKEYPIISIEDPFDQDDWESY 307
Query: 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
L +SVDIQ+VGDDLLVTNP+RI I+KK+CN LLLKVN +
Sbjct: 308 TKLTASVDIQIVGDDLLVTNPERIKTGIEKKACNALLLKVNQI 350
|
|
| UNIPROTKB|F1RFY2 ENO3 "Beta-enolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 231/341 (67%), Positives = 282/341 (82%)
Query: 52 RQIIDSRGNPTVEVDLIT-DDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110
R+I+DSRGNPTVEVDL T FR+AVPSGASTGIYEALELRDGDKS Y GKGVL AV++
Sbjct: 9 REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEH 68
Query: 111 INDILGPKLVG--VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGV 168
IN LGP L+ + + DQ +VD M+E+DGT NKSK GANAILGVSL+VC+AGA KGV
Sbjct: 69 INKTLGPALLEKKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGV 128
Query: 169 PLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEV 228
PLY+HI +L+G +LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA+SF EA+R+G+EV
Sbjct: 129 PLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMRIGAEV 188
Query: 229 YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288
YH LKG+IK KYG+DA NVGDEGGFAPN+ +N E L LL AI+ AGY K+ IGMDVAA
Sbjct: 189 YHHLKGVIKGKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAA 248
Query: 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348
SEF+ ++G YDL+FK P+D + ++ + LG+LYK F++++P+VSIEDPFDQDDW +W S
Sbjct: 249 SEFY-RNGKYDLDFKS-PDDPSRHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWKTWTS 306
Query: 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
S V+IQ+VGDDL VTNPKRIA+A++KK+CN LLLKVN +
Sbjct: 307 FLSGVNIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI 347
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P42897 | ENO_ALLMI | 4, ., 2, ., 1, ., 1, 1 | 0.6483 | 0.8172 | 0.8151 | N/A | no |
| P25704 | ENOB_RABIT | 4, ., 2, ., 1, ., 1, 1 | 0.6772 | 0.8680 | 0.7880 | yes | no |
| P15007 | ENO_DROME | 4, ., 2, ., 1, ., 1, 1 | 0.6404 | 0.9517 | 0.75 | yes | no |
| Q27527 | ENO_CAEEL | 4, ., 2, ., 1, ., 1, 1 | 0.6657 | 0.8705 | 0.7903 | yes | no |
| Q8IJN7 | ENO_PLAF7 | 4, ., 2, ., 1, ., 1, 1 | 0.5988 | 0.8807 | 0.7780 | yes | no |
| Q3ZC09 | ENOB_BOVIN | 4, ., 2, ., 1, ., 1, 1 | 0.6743 | 0.8680 | 0.7880 | yes | no |
| Q1KYT0 | ENOB_PIG | 4, ., 2, ., 1, ., 1, 1 | 0.6657 | 0.8680 | 0.7880 | yes | no |
| O57391 | ENOG_CHICK | 4, ., 2, ., 1, ., 1, 1 | 0.6628 | 0.8680 | 0.7880 | yes | no |
| P13929 | ENOB_HUMAN | 4, ., 2, ., 1, ., 1, 1 | 0.6685 | 0.8680 | 0.7880 | yes | no |
| Q27727 | ENO_PLAFA | 4, ., 2, ., 1, ., 1, 1 | 0.5961 | 0.8807 | 0.7780 | yes | no |
| Q9C9C4 | ENO1_ARATH | 4, ., 2, ., 1, ., 1, 1 | 0.8650 | 0.9137 | 0.7547 | yes | no |
| P15429 | ENOB_RAT | 4, ., 2, ., 1, ., 1, 1 | 0.6772 | 0.8680 | 0.7880 | yes | no |
| Q54RK5 | ENOA_DICDI | 4, ., 2, ., 1, ., 1, 1 | 0.6676 | 0.8680 | 0.7880 | yes | no |
| P21550 | ENOB_MOUSE | 4, ., 2, ., 1, ., 1, 1 | 0.6743 | 0.8680 | 0.7880 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| AT1G74030 | enolase, putative; enolase, putative; FUNCTIONS IN- phosphopyruvate hydratase activity; INVOLVED IN- in 12 processes; LOCATED IN- phosphopyruvate hydratase complex, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Enolase (InterPro-IPR000941); BEST Arabidopsis thaliana protein match is- LOS2; copper ion binding / phosphopyruvate hydratase (TAIR-AT2G36530.1); Has 9513 Blast hits to 9495 proteins in 2259 species- Archae - 189; Bacteria - 3126; Metazoa - 1415; Fungi - 220; Plants - 154; Viruses - 0; Other Eukaryotes - 4409 (so [...] (477 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| AT1G09780 | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, pu [...] (557 aa) | • | • | • | • | 0.989 | |||||
| AT3G08590 | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, pu [...] (560 aa) | • | • | • | 0.973 | ||||||
| AT5G63680 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (510 aa) | • | • | • | • | 0.967 | |||||
| AT3G25960 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, m [...] (497 aa) | • | • | • | • | 0.967 | |||||
| AT3G04050 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, m [...] (510 aa) | • | • | • | • | 0.966 | |||||
| AT5G56350 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (498 aa) | • | • | • | • | 0.966 | |||||
| AT3G55650 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (510 aa) | • | • | • | • | 0.965 | |||||
| PGIC | glucose-6-phosphate isomerase, cytosolic (PGIC); glucose-6-phosphate isomerase, cytosolic (PGIC [...] (560 aa) | • | • | • | 0.965 | ||||||
| AT3G55810 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (492 aa) | • | • | • | • | 0.960 | |||||
| AT5G08570 | pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (510 aa) | • | • | • | • | 0.960 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 394 | |||
| PLN00191 | 457 | PLN00191, PLN00191, enolase | 0.0 | |
| cd03313 | 408 | cd03313, enolase, Enolase: Enolases are homodimeri | 0.0 | |
| PTZ00081 | 439 | PTZ00081, PTZ00081, enolase; Provisional | 0.0 | |
| PRK00077 | 425 | PRK00077, eno, enolase; Provisional | 0.0 | |
| COG0148 | 423 | COG0148, Eno, Enolase [Carbohydrate transport and | 1e-161 | |
| TIGR01060 | 425 | TIGR01060, eno, phosphopyruvate hydratase | 1e-154 | |
| pfam00113 | 296 | pfam00113, Enolase_C, Enolase, C-terminal TIM barr | 1e-124 | |
| pfam03952 | 132 | pfam03952, Enolase_N, Enolase, N-terminal domain | 2e-78 | |
| PRK08350 | 341 | PRK08350, PRK08350, hypothetical protein; Provisio | 7e-18 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 8e-10 |
| >gnl|CDD|215095 PLN00191, PLN00191, enolase | Back alignment and domain information |
|---|
Score = 674 bits (1741), Expect = 0.0
Identities = 258/352 (73%), Positives = 298/352 (84%), Gaps = 2/352 (0%)
Query: 37 ASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGD 95
+ A + VKARQIIDSRGNPTVEVDL T +FR+AVPSGASTGIYEALELRDGD
Sbjct: 19 HLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGD 78
Query: 96 KSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVS 155
K Y GKGVL AVKN+N+I+ P L+G+D DQ ++D MLE+DGTPNK K+GANAIL VS
Sbjct: 79 KD-YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVS 137
Query: 156 LSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA 215
L+VC+AGA KGVPLYKHI +L+G K+LV+PVPAFNVINGGSHAGN LAMQEFMILPVGA
Sbjct: 138 LAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 197
Query: 216 TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275
+SF EA++MGSEVYH LK +IK+KYGQDACNVGDEGGFAPN+QDN+EGL LL +AIEKAG
Sbjct: 198 SSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAG 257
Query: 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
YTGKI IGMDVAASEF+TKD YDL+FK++ NDG++ S L DLYKEFV D+PIVSIE
Sbjct: 258 YTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIE 317
Query: 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DPFDQDDW WA L S D+Q+VGDDLLVTNPKR+A+AIQ+K+CN LLLKVN
Sbjct: 318 DPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVN 369
|
Length = 457 |
| >gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Score = 577 bits (1490), Expect = 0.0
Identities = 206/346 (59%), Positives = 264/346 (76%), Gaps = 15/346 (4%)
Query: 48 SVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGGKGVL 105
+KAR+I+DSRGNPTVEV++ T+D + R+AVPSGASTG +EA+ELRDGDKS Y GKGVL
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 106 NAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGA 165
AVKN+N+I+ P L+G+D+ DQ +D +++E+DGTPNKSK+GANAILGVSL+V +A A A
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAA 120
Query: 166 KGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMG 225
G+PLY+++ G V+PVP FNVINGG+HAGN L QEFMI+PVGA SF+EALRMG
Sbjct: 121 LGLPLYRYL---GGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSEALRMG 177
Query: 226 SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG--KINIG 283
+EVYH LK ++K+K G A NVGDEGGFAPN+ N E L LL +AIEKAGY KI I
Sbjct: 178 AEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237
Query: 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343
+DVAASEF+ +G Y + +D L+++ L D YKE V+ +PIVSIEDPFD+DDW
Sbjct: 238 LDVAASEFY-DEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDW 291
Query: 344 SSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
WA L + + IQ+VGDDL VTNP+R+ + I+KK+ N LL+KVN
Sbjct: 292 EGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVN 337
|
The reaction is facilitated by the presence of metal ions. Length = 408 |
| >gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional | Back alignment and domain information |
|---|
Score = 576 bits (1487), Expect = 0.0
Identities = 227/354 (64%), Positives = 283/354 (79%), Gaps = 12/354 (3%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
+KS+KAR+I+DSRGNPTVEVDL T+ +FR+AVPSGASTGIYEALELRDGDKS Y GKGV
Sbjct: 4 IKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGV 63
Query: 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSLSV 158
L AV+N+N+I+ P L+G D+ DQ ++D +M+E +DGT N KSK+GANAIL VS++V
Sbjct: 64 LKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAV 123
Query: 159 CRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGAT 216
RA A AKGVPLYK++ +L+G T + V+PVP FNVINGG HAGN LA QEFMI PVGA
Sbjct: 124 ARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAP 183
Query: 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGY 276
SF EALRMG+EVYH LK +IK+KYG DA NVGDEGGFAPN++D E L LL +AI+KAGY
Sbjct: 184 SFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKAGY 243
Query: 277 TGKINIGMDVAASEFFTKDGN-YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335
GK+ I MDVAASEF+ K+ YDL+FK ND ++ L+ + L +LY + V+ +PIVSIE
Sbjct: 244 EGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIE 303
Query: 336 DPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DPFDQDDW ++A L +++ +Q+VGDDLLVTNP RI +AI+KK+CN LLLKVN
Sbjct: 304 DPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVN 357
|
Length = 439 |
| >gnl|CDD|234617 PRK00077, eno, enolase; Provisional | Back alignment and domain information |
|---|
Score = 515 bits (1329), Expect = 0.0
Identities = 190/350 (54%), Positives = 252/350 (72%), Gaps = 20/350 (5%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGG 101
+K++ + AR+I+DSRGNPTVEV++ +D R+AVPSGASTG EA+ELRDGDKS Y G
Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV+N+N+ + P L+G+D DQ +D M+E+DGTPNKSK+GANAILGVSL+V +A
Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A + G+PLY++ L G V+PVP N+INGG+HA NN+ +QEFMI+PVGA SF EA
Sbjct: 122 AADSLGLPLYRY---LGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEA 178
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LRMG+EV+H LK ++KEK G + VGDEGGFAPN++ N E L L+ +AIEKAGY G+
Sbjct: 179 LRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
I + +D AASEF+ KDG Y L +G L+++ + D E V +PIVSIED D
Sbjct: 237 IALALDCAASEFY-KDGKYVL-------EGE-GLTSEEMIDYLAELVDKYPIVSIEDGLD 287
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++DW W L + +QLVGDDL VTN KR+ + I+K + N +L+KVN
Sbjct: 288 ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVN 337
|
Length = 425 |
| >gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 458 bits (1180), Expect = e-161
Identities = 188/345 (54%), Positives = 250/345 (72%), Gaps = 21/345 (6%)
Query: 49 VKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106
V AR+I+DSRGNPTVEV++ +D F R+AVPSGASTG +EA+ELRDGD Y GKGVL
Sbjct: 7 VIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSR-YLGKGVLK 65
Query: 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAK 166
AV N+N+I+ P L+G+D DQA +D++++E+DGT NKSK+GANAILGVSL+V +A A +
Sbjct: 66 AVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASL 125
Query: 167 GVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS 226
G+PLY+++ G LV+PVP NVINGG+HA NNL +QEFMI+PVGA SF EALR G+
Sbjct: 126 GIPLYRYL---GGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGA 182
Query: 227 EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK--INIGM 284
EV+H LK ++KEK + VGDEGGFAPN++ N E L +L +AIE+AGY I + +
Sbjct: 183 EVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALAL 240
Query: 285 DVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344
DVAASEF+ KDG Y L + L+++ L + Y E V+ +PIVSIEDP +DDW
Sbjct: 241 DVAASEFY-KDGKYVLEGES--------LTSEELIEYYLELVKKYPIVSIEDPLSEDDWE 291
Query: 345 SWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+A L + +Q+VGDDL VTNPKR+ + I+K + N +L+K N
Sbjct: 292 GFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPN 336
|
Length = 423 |
| >gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase | Back alignment and domain information |
|---|
Score = 441 bits (1137), Expect = e-154
Identities = 182/349 (52%), Positives = 248/349 (71%), Gaps = 18/349 (5%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGGKG 103
+ ++AR+I+DSRGNPTVEV++I +D R+AVPSGASTG EALELRDGDK Y GKG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
VL AV+N+N+I+ P+L+G+D DQ E+D I++E+DGTPNKSK+GANAILGVS++V +A A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAA 120
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
+ G+PLY++ L G V+PVP N+INGG+HA NNL QEFMI+PVGA SF EALR
Sbjct: 121 DSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPSFREALR 177
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK-IN 281
MG+EV+H LK ++KEK A VGDEGGFAPN+ N E L ++ +AIEKAGY G+ +
Sbjct: 178 MGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGYKPGEDVA 235
Query: 282 IGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
+ +D AASEF+ +DG Y + + L+++ + + Y+E V +PI+SIED +
Sbjct: 236 LALDCAASEFYDEEDGKYVYKGENKQ------LTSEEMIEYYEELVEKYPIISIEDGLSE 289
Query: 341 DDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+DW WA L + +Q+VGDDL VTN + + E I+ N +L+K N
Sbjct: 290 EDWEGWAELTKRLGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPN 338
|
Alternate name: enolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 425 |
| >gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-124
Identities = 142/211 (67%), Positives = 170/211 (80%), Gaps = 3/211 (1%)
Query: 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYG 241
V+PVP NVINGGSHAGN LAMQEFMILP GA+SF EA+RMGSEVYH LK +IK KYG
Sbjct: 1 PYVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYG 60
Query: 242 QDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDL 300
QDA NVGDEGGFAPN+Q N+E L L+ +AIEKAGYTGK+ I MDVA+SEF+ KDG YDL
Sbjct: 61 QDATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDL 120
Query: 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLV 358
+FK +D + L++ L DLYKE ++ +PIVSIEDPFD+DDW +W L +S+ IQ+V
Sbjct: 121 DFKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIV 180
Query: 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
GDDL VTNPKRIA+AI+KK+CN LLLKVN +
Sbjct: 181 GDDLTVTNPKRIAKAIEKKACNSLLLKVNQI 211
|
Length = 296 |
| >gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 2e-78
Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGGK 102
+ + AR+I+DSRGNPTVEV++ +D R+AVPSGASTG +EA+ELRDGDKS YGGK
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 103 GVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
GVL AV+N+N+I+ P L+G+D RDQ +D ++E+DGTPNKSK+GANAIL VSL+V +A
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAA 120
Query: 163 AGAKGVPLYKHI 174
A A G+PLY+++
Sbjct: 121 AAALGLPLYRYL 132
|
Length = 132 |
| >gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 7e-18
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 18/144 (12%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDDLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++++ R + G +VEVD+ITD F R A P + +Y A R
Sbjct: 4 IENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPIDENPSLYIAEAHR------------ 51
Query: 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAG 164
AV +++I+GP+L+G D +Q +D+ + EIDGT + S IGAN L VS++V +A A
Sbjct: 52 --AVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAAN 109
Query: 165 AKGVPLYKHIQELSGTKELVMPVP 188
+K +PLY +I GT +PVP
Sbjct: 110 SKNMPLYSYI---GGTFTTELPVP 130
|
Length = 341 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-10
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 308 DGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNP 367
D + + L + + + + IE+P DD +A+L+ I + D+ + T
Sbjct: 100 DANGAWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESVTTVD 158
Query: 368 KRIAEAIQKKSCNGLLLKVNHL 389
EA++ + + L +K +
Sbjct: 159 DA-LEALELGAVDILQIKPTRV 179
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 394 | |||
| PLN00191 | 457 | enolase | 100.0 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 100.0 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 100.0 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 99.97 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 99.96 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 99.95 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 99.94 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 99.93 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 99.93 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.93 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 99.88 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.64 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 99.63 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.3 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 98.55 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.1 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.84 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 97.63 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.33 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.24 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 97.15 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 96.59 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 96.06 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 92.96 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 89.63 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 87.24 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 86.45 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 85.77 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 84.63 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 83.84 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 81.89 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 80.49 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 80.09 |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-84 Score=655.91 Aligned_cols=370 Identities=70% Similarity=1.105 Sum_probs=346.4
Q ss_pred CCCCCcchhhhhHhhhcCCc--ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCccc
Q 016156 24 PRSYRPMRVQCSVASTASSS--AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYG 100 (394)
Q Consensus 24 ~~~~~p~d~~g~la~~f~~~--~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~ 100 (394)
.+..+|.|+|||||+||++. |+|++|++|+|+||+|+|||+|+|+|+ |.+++++|||+|||++||.+++|+++. |.
T Consensus 4 ~~~~~~~d~~~~la~~~~~~~~~~I~~v~~r~ildsrG~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~-~~ 82 (457)
T PLN00191 4 AVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKD-YL 82 (457)
T ss_pred cccCCCcChHHHHHHHHhhccCCeeeEEEEEEEEcCCCCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcc-cC
Confidence 35679999999999999887 689999999999999999999999999 978999999999999999999999865 99
Q ss_pred chhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC
Q 016156 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (394)
Q Consensus 101 g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~ 180 (394)
|+++.+|++.|++.|+|.|+|+||.||++||+.|.++|+|++++.+|.||++|||+|+|+++|+.+|+|||+||+++.|.
T Consensus 83 g~gv~~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~ 162 (457)
T PLN00191 83 GKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGN 162 (457)
T ss_pred CccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999544365
Q ss_pred cccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCCh
Q 016156 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDN 260 (394)
Q Consensus 181 ~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~ 260 (394)
.+.+||+|++|+||||+|+++.+++||||++|.+..+++|+++++.++|+.+|++|+.|||..++.+||+|||.|+++++
T Consensus 163 ~~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~~~~ 242 (457)
T PLN00191 163 KKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDN 242 (457)
T ss_pred CCccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999988778999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
+++|+++++||+++||+++|.|++||||++||+++++|++.|+++..+.+..+|++|++++|.+++++|||.||||||++
T Consensus 243 ~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IEDPl~~ 322 (457)
T PLN00191 243 KEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQ 322 (457)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEECCCCc
Confidence 99999999999999998789999999999999646889986554322223457999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|+++..+||+|||++++++++++++|+.++||+++||++|+||||+
T Consensus 323 ~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITe 376 (457)
T PLN00191 323 DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTE 376 (457)
T ss_pred ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 999999999999889999999988999999999999999999999999999985
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=595.24 Aligned_cols=350 Identities=69% Similarity=1.105 Sum_probs=339.5
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|.|.+|++|+|+||+|+|||||+++|+ |++|+++|||+|||.+||.++||+++..|.|+++.+|+..||+.|+|.|+++
T Consensus 1 m~~~kv~aR~I~dSRGnPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~ 80 (433)
T KOG2670|consen 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKK 80 (433)
T ss_pred CCceeeehhhhhhcCCCCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHcc
Confidence 345669999999999999999999999 9999999999999999999999999889999999999999999999999987
Q ss_pred --CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc-ccccceeeEEeecCCcCC
Q 016156 123 --DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK-ELVMPVPAFNVINGGSHA 199 (394)
Q Consensus 123 --dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~-~~~iP~p~~~~i~gG~~~ 199 (394)
|+.+|++||+.|..+|+|.|++.+|+|||.+||+|+|++.|...|+|||+||..+.|+. ..-+|+|.||++|||.|+
T Consensus 81 ~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHA 160 (433)
T KOG2670|consen 81 NLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHA 160 (433)
T ss_pred CCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccc
Confidence 99999999999999999999999999999999999999999999999999999888876 467999999999999999
Q ss_pred CCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 016156 200 GNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGK 279 (394)
Q Consensus 200 ~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gd 279 (394)
++++.+|||||.|.++.+++||++++.++|++||..++.|||...+.|||+|||+|++.+.++.|++|.+|++.+||+|+
T Consensus 161 Gn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~k 240 (433)
T KOG2670|consen 161 GNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGK 240 (433)
T ss_pred cchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEe
Q 016156 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (394)
Q Consensus 280 i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~g 359 (394)
|.|++|+||++||. +|+|+++|++|+.+....+|++++.++|.+++++|||+.|||||+++||++|.++....+|+|+|
T Consensus 241 ikIgmDvAaseF~~-dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVg 319 (433)
T KOG2670|consen 241 VKIGMDVAASEFYK-DGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVG 319 (433)
T ss_pred eEEEEeechhhhhc-CCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEec
Confidence 99999999999996 89999999999988888899999999999999999999999999999999999999999999999
Q ss_pred cCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 360 de~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||+.+||++++++++++++||.+++|+||+|++||
T Consensus 320 DDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtE 354 (433)
T KOG2670|consen 320 DDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTE 354 (433)
T ss_pred CcccccCHHHHHHHHHHhhccceEeeccccccHHH
Confidence 99999999999999999999999999999999986
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=620.08 Aligned_cols=351 Identities=64% Similarity=1.047 Sum_probs=330.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|+|++|++|+|+||+|+|||+|+|+|+ |.+++++|||+|||++||.++||+++.+|.|+++.+|++.|++.|+|.|+|+
T Consensus 2 ~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG~ 81 (439)
T PTZ00081 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIGK 81 (439)
T ss_pred cEEEEEEEEEEecCCCCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999 9779999999999999999999999778999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-hcCCCC-----CCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC--cccccceeeEEeec
Q 016156 123 DIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT--KELVMPVPAFNVIN 194 (394)
Q Consensus 123 dp~~~e~Id~~l~~-~~~~~~-----~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~--~~~~iP~p~~~~i~ 194 (394)
|+.||++||+.|.+ +|+|.+ ++.+|.||++|||+|+|+++|+.+|+|||+||+++.|. .+..||+|++|+||
T Consensus 82 d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~niin 161 (439)
T PTZ00081 82 DVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVIN 161 (439)
T ss_pred ChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEecc
Confidence 99999999999999 999988 99999999999999999999999999999999544354 34579999999999
Q ss_pred CCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHc
Q 016156 195 GGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKA 274 (394)
Q Consensus 195 gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~a 274 (394)
||+|+++++++||||++|.+..++.|+++++.++|+.+|++|+.|||..++.+||+|||.|++++++++|+++++||+++
T Consensus 162 GG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~~a 241 (439)
T PTZ00081 162 GGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKKA 241 (439)
T ss_pred CcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998777899999999999999999999999999999
Q ss_pred CCCCCcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc
Q 016156 275 GYTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV 353 (394)
Q Consensus 275 g~~gdi~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~ 353 (394)
||+++|.|++||||++||+ ++++|++.|++|.++++..+|++|++++|.+++++|||.||||||+++|+++|++|++++
T Consensus 242 g~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~l 321 (439)
T PTZ00081 242 GYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAI 321 (439)
T ss_pred CCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhh
Confidence 9987899999999999997 368899876654333334689999999999999999999999999999999999999999
Q ss_pred --CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 354 --DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 354 --~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
.+||+|||++++|+++++++|+.++||+++||++|+||||+
T Consensus 322 g~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe 364 (439)
T PTZ00081 322 GQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTE 364 (439)
T ss_pred CCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHH
Confidence 59999999988999999999999999999999999999985
|
|
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-78 Score=581.52 Aligned_cols=335 Identities=56% Similarity=0.939 Sum_probs=321.3
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
.|++|.+|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||..||.++||++ .+|.|+|+..|++.+|+.|+|.|+|.
T Consensus 3 ~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd-~ry~gkGV~~AV~nVn~~Iap~LiG~ 81 (423)
T COG0148 3 AIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGD-SRYLGKGVLKAVANVNEIIAPALIGL 81 (423)
T ss_pred ccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCc-cccccccHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999999999999 887 8899999999999999999999 79999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
|+.||..||+.|..+|+|.|++++|.||+.|||+|+++++|+.+|+|||+||| |.....+|+|++|++|||.|+++.
T Consensus 82 da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlG---G~~a~~lPvPm~NvinGG~HA~n~ 158 (423)
T COG0148 82 DATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNN 158 (423)
T ss_pred CcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhc---CccccccccceeeeecccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999 655668999999999999999999
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-Cc
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KI 280 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di 280 (394)
+++||||++|.+..++.|+++++.++|+++|+.++.| |.. +.+||+|||.|++.+.+++|+.+.+|++++|++ | +|
T Consensus 159 ~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~~-t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i 236 (423)
T COG0148 159 LDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GLS-TGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDI 236 (423)
T ss_pred ccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Ccc-ccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcce
Confidence 9999999999999999999999999999999999988 654 449999999999999999999999999999999 5 79
Q ss_pred EEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeEE
Q 016156 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLV 358 (394)
Q Consensus 281 ~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I~ 358 (394)
.|++|||+++||+ +++|.+. +..+|++|++++|.+++++|||.+|||||+++||++|++|+++++ ++|+
T Consensus 237 ~~alD~Aasefy~-~~~Y~~~--------~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqiv 307 (423)
T COG0148 237 ALALDVAASEFYK-DGKYVLE--------GESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIV 307 (423)
T ss_pred eeeehhhhhhhcc-CCeeeec--------CcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEE
Confidence 9999999999998 6789886 237799999999999999999999999999999999999999998 8999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++++||++.++++|+.+++|.+.|||||+|++||
T Consensus 308 GDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTE 343 (423)
T COG0148 308 GDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTE 343 (423)
T ss_pred CCcceecCHHHHHHHHHhccCceEEEechhcccHHH
Confidence 999999999999999999999999999999999986
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=584.20 Aligned_cols=338 Identities=61% Similarity=0.994 Sum_probs=318.5
Q ss_pred EEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCC
Q 016156 48 SVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR 125 (394)
Q Consensus 48 ~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~ 125 (394)
+|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++.+|.|+++.+++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 48999999999999999999999 877 9999999999999999999999778999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcc
Q 016156 126 DQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAM 205 (394)
Q Consensus 126 ~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~ 205 (394)
+|++||+.|.+++++.+++.+|.||++|||||+||++||.+|+|||+||| |..++++|+|+||+||||+|+++++++
T Consensus 81 dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lg---g~~~~~lpvp~~nvi~GG~ha~~~~~i 157 (408)
T cd03313 81 DQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLG---GLAAYVLPVPMFNVINGGAHAGNKLDF 157 (408)
T ss_pred hHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhc---CCCCcccceeeEEEecCcccccCcccc
Confidence 99999999999999999999999999999999999999999999999999 655678999999999999999999999
Q ss_pred cceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcEEE
Q 016156 206 QEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KINIG 283 (394)
Q Consensus 206 ~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~ 283 (394)
||||++|....+++++++++.++|+++|++|+.|+|.+++++|++|+|.|++++++++|+++++||+++||+ | |+.|+
T Consensus 158 qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~ 237 (408)
T cd03313 158 QEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237 (408)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 999999999999999999999999999999888876678899999999999999999999999999999998 5 89999
Q ss_pred EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCeEEecC
Q 016156 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGDD 361 (394)
Q Consensus 284 iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~I~gde 361 (394)
||+||++||+ +++|.+... .+..+|++|+++++.+++++|+|.||||||+++|+++|++|++++ .+||+|||
T Consensus 238 lD~aas~~~~-~~~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE 311 (408)
T cd03313 238 LDVAASEFYD-EGKYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDD 311 (408)
T ss_pred Eehhhhhhcc-cCcceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCC
Confidence 9999999997 788887311 135789999999999999999999999999999999999999998 69999999
Q ss_pred ccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 362 LLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 362 ~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++++++++++.++||+++||++|+||||+
T Consensus 312 ~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite 344 (408)
T cd03313 312 LFVTNPERLKKGIEKKAANALLIKVNQIGTLTE 344 (408)
T ss_pred cccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 878899999999999999999999999999985
|
The reaction is facilitated by the presence of metal ions. |
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-74 Score=582.16 Aligned_cols=337 Identities=55% Similarity=0.930 Sum_probs=318.6
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
|+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++.+|.|+++..+++.|++.|+|.|+|
T Consensus 2 ~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~LiG 81 (425)
T PRK00077 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALIG 81 (425)
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999 977 999999999999999999998877899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.||++||+.|.+++++.+++.+|.||++|||+|+||++||.+|+|||+||| |..++++|+|+|+++|||.|+++
T Consensus 82 ~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLG---G~~~~~~pvp~~n~i~GG~ha~~ 158 (425)
T PRK00077 82 LDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLG---GPNAKVLPVPMMNIINGGAHADN 158 (425)
T ss_pred CChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCcccccceeEEEEcccccccC
Confidence 999999999999999988888888999999999999999999999999999999 65566899999999999999999
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-C
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-K 279 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-d 279 (394)
++++||+|++|....+++++++++.++|+++|..++.| |. .+++|++|+|.|++++++++|++|++||+++||+ | |
T Consensus 159 ~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G~d 236 (425)
T PRK00077 159 NVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236 (425)
T ss_pred chhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999988877 53 5679999999999999999999999999999998 6 8
Q ss_pred cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeE
Q 016156 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQL 357 (394)
Q Consensus 280 i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I 357 (394)
|.|+|||||++||+ |++|++. +..||+++++++|.+++++|+|.||||||+++|+++|++|+++++ +||
T Consensus 237 i~l~lD~aas~~~~-~~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI 307 (425)
T PRK00077 237 IALALDCAASEFYK-DGKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQL 307 (425)
T ss_pred eEEEEehhhhhccc-CCeeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeE
Confidence 99999999999996 8999985 236899999999999999999999999999999999999999994 999
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|||++++++++++++++.++||+++||++|+||||+
T Consensus 308 ~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGite 344 (425)
T PRK00077 308 VGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTE 344 (425)
T ss_pred EcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 9999888899999999999999999999999999985
|
|
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-74 Score=576.20 Aligned_cols=348 Identities=20% Similarity=0.319 Sum_probs=317.4
Q ss_pred CCCcchhhhhHhhhcCCc---ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCc-c-
Q 016156 26 SYRPMRVQCSVASTASSS---AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSV-Y- 99 (394)
Q Consensus 26 ~~~p~d~~g~la~~f~~~---~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~-~- 99 (394)
..+|+|++||||.||..+ ++|++|++|+|+||+|+|||+|+|+++ |.+ +|||+||| ||.++||++..+ |
T Consensus 28 ~~~~~d~~~~l~~~f~~~~~~~~I~~i~areIlDSrGnPTVev~v~l~~G~~---vPSGAStG--EA~elRDgd~~~~~g 102 (518)
T PTZ00378 28 DAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAGETVLRFTLELLNGME---VSSGALLS--PSHGERDGEADATLD 102 (518)
T ss_pred hcCCCCHHHHHHHHHHhhcCCCeeeEEEEEEEEcCCCCeeEEEEEEECCCCE---ECCCCccc--ceeeeecCCcccccC
Confidence 457888889999999998 899999999999999999999999999 864 99999999 999999988544 7
Q ss_pred cchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 100 GGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 100 ~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
.|+++..|++ +.|+|.|+|+|+.||++||+.|..+|+|.+++++|+||+.|||||++.++|+..++|||+|||++.+
T Consensus 103 ~gkgV~~Av~---~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~ 179 (518)
T PTZ00378 103 PAEYTTEALQ---NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFG 179 (518)
T ss_pred CCccHHHHHH---hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhcccc
Confidence 7888988876 6799999999999999999999999999999999999999999999999999999999999996433
Q ss_pred C----cccccceeeEEeecCCcCCCCCCcccceeeccCCC--CCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCC
Q 016156 180 T----KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGA--TSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGF 253 (394)
Q Consensus 180 ~----~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~--~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~ 253 (394)
. ....||+|++|+||||+|+++++++||||++|.+. .++.|+++++.++|++|++ | +.+.+||+|||
T Consensus 180 ~~~~~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~------~-~~t~vGDEGGf 252 (518)
T PTZ00378 180 SLTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQ------S-HNSSVRSDGSL 252 (518)
T ss_pred ccccCCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhh------c-ccCccCCCcCc
Confidence 2 24579999999999999999999999999999976 8999999999999999963 2 35789999999
Q ss_pred -CCCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccc------------cccC--C---eeeccCCCCCCCCCccc
Q 016156 254 -APNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEF------------FTKD--G---NYDLNFKKQPNDGAHVL 313 (394)
Q Consensus 254 -~~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~------------~~~n--g---~Y~~~~~~~~~~~~~~~ 313 (394)
.|++++.+++|+++.+||+++||+ | ||.|++||||||| |+++ + +|.+. + ....+
T Consensus 253 aap~~~~~eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~-~-----~~~~~ 326 (518)
T PTZ00378 253 HWDGFANLTDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLF-P-----GEPDV 326 (518)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeec-C-----CCCCC
Confidence 677889999999999999999999 6 7999999999999 9731 3 68773 1 12247
Q ss_pred CHHHHHHHHHHhhhcCC--ceeeeCCCCCCCHHHHHHHHhhcC--CeEEecCcccc-CHHHHHHHHhcCCCcEEeecccc
Q 016156 314 SAQSLGDLYKEFVRDFP--IVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVT-NPKRIAEAIQKKSCNGLLLKVNH 388 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~--i~~iEdPl~~~D~~~~~~L~~~~~--i~I~gde~~~~-~~~~~~~~i~~~a~d~i~ik~~~ 388 (394)
|++|+++||.+++++|| |.+|||||+++|+++|++|+++++ |+|+|||+++| |++.++++|+.++||.++||+||
T Consensus 327 t~~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQ 406 (518)
T PTZ00378 327 TGDQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCA 406 (518)
T ss_pred CHHHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEcccc
Confidence 99999999999999999 999999999999999999999997 99999999999 89999999999999999999999
Q ss_pred ccccCC
Q 016156 389 LFEIKS 394 (394)
Q Consensus 389 ~Ggit~ 394 (394)
+|+|||
T Consensus 407 IGTlSE 412 (518)
T PTZ00378 407 IGTLSD 412 (518)
T ss_pred ceeHHH
Confidence 999985
|
|
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=572.38 Aligned_cols=338 Identities=55% Similarity=0.934 Sum_probs=315.5
Q ss_pred EEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 46 VKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 46 I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|||+|+|.+|+.+++|+++.+|.|+++..+++.|++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999 977 99999999999999999999987789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.||++||+.|.+++++.+++.+|.||++|||||+||++||.+|+|||+||| |..+++||+|+++++|||.|+++++
T Consensus 81 ~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLG---G~~~~~lPvp~~n~i~GG~~a~~~~ 157 (425)
T TIGR01060 81 AFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLG---GKNAYVLPVPMMNIINGGAHADNNL 157 (425)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCceeeEEEEeecccccccCcc
Confidence 9999999999998888888888899999999999999999999999999999 7667799999999999999998889
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KIN 281 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~ 281 (394)
++||+|++|.+..+++++++++.++|+++|+.++.| | +.+.+|++|||.|++++++++|+++++||+++|++ | |+.
T Consensus 158 ~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~-~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~ 235 (425)
T TIGR01060 158 DFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-G-LATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVA 235 (425)
T ss_pred CHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceE
Confidence 999999999999999999999999999999888776 5 34678999999999988999999999999999887 6 899
Q ss_pred EEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCeEE
Q 016156 282 IGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLV 358 (394)
Q Consensus 282 l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~I~ 358 (394)
|++|+||+++|+ ++++|++.. ....+|++|+++++.+++++|+|.||||||+++|+++|++|++++ .+||+
T Consensus 236 l~lD~aas~~~~~~~~~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~ 309 (425)
T TIGR01060 236 LALDCAASEFYDEEDGKYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIV 309 (425)
T ss_pred EEEEccccccccccCceeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEE
Confidence 999999999997 468898861 123579999999998889999999999999999999999999999 69999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+||++++++++++++++.++||+++||++|+||||+
T Consensus 310 gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIte 345 (425)
T TIGR01060 310 GDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTE 345 (425)
T ss_pred eCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 999888899999999999999999999999999985
|
Alternate name: enolase |
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=421.58 Aligned_cols=263 Identities=29% Similarity=0.459 Sum_probs=236.6
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
+|.+|++|+|+||+|+|||+|+|+|+ |..|+++||+ +++.+|. +++..|++.||+.|+|.|+|+|
T Consensus 3 ~I~~i~aReIlDSRGnPTVEveV~~~~g~gra~vPSD-------------~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPID-------------ENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEEEcCCCCceEEEEEEECCcEEEEEecCC-------------CCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999 9339999983 2333677 8899999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
+.||++||+.|..+|+|.+++.+|+||+.|||+|+++++|+.+|+|||+||| |.....+|+|++|+||||
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylg---g~~~~~lPvP~~NiiNGG------- 138 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIG---GTFTTELPVPILEFAEDE------- 138 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhc---CCCCCccCccceeeecCC-------
Confidence 9999999999999999999999999999999999999999999999999998 533458999999999998
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-CcE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KIN 281 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di~ 281 (394)
++ |||++| .++++ +.++|+++|..|+. +.+++|+++.+|++++||+ | ||.
T Consensus 139 ~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~dv~ 190 (341)
T PRK08350 139 NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLEVA 190 (341)
T ss_pred ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCccccEE
Confidence 45 999998 68999 78999999987752 3489999999999999999 6 799
Q ss_pred EEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC-CeEEec
Q 016156 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGD 360 (394)
Q Consensus 282 l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~-i~I~gd 360 (394)
+++|+. ..+|++|++ +|+++|||.+|| ||+++ ++|++|+++.+ ++|+||
T Consensus 191 ~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~g~~iqiVGD 240 (341)
T PRK08350 191 LGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAGTHGVFIDGE 240 (341)
T ss_pred EeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhcCCceEEEcc
Confidence 999991 024788888 679999999999 99966 99999999943 899999
Q ss_pred CccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 361 DLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 361 e~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+++||+.. ++++||.++||+||+|+|||
T Consensus 241 DLfvTN~~~-----~~~~~NaiLiK~NQIGTltE 269 (341)
T PRK08350 241 YLFRTRNIL-----DRRYYNALSIKPINLGTLTD 269 (341)
T ss_pred cccccChhH-----hhCccceEEEeeccceeHHH
Confidence 999999754 88999999999999999986
|
|
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=374.07 Aligned_cols=212 Identities=59% Similarity=1.012 Sum_probs=186.9
Q ss_pred cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH
Q 016156 183 LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (394)
Q Consensus 183 ~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~ 262 (394)
..||+|++|+||||+|+++++++|||||+|.+..++.|+++++.++|++||+.|+.|+|...+.+||+|||.|++++.++
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 36999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
+|++|.+||+++||+++|.|++|||||+||+ ++|+|++.++.+..+.+..+|++|++++|.+++++|||.+|||||+++
T Consensus 82 aL~ll~~Ai~~aGy~~~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~ed 161 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEPDVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDED 161 (295)
T ss_dssp HHHHHHHHHHHTT-TTTBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-TT
T ss_pred HHHHHHHHHHHccccceeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEcccccc
Confidence 9999999999999988999999999999996 579999997765555556889999999999999999999999999999
Q ss_pred CHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+++|++|+++++ |+|+|||+++||+++++++++.++||.+++|+||+|+|||
T Consensus 162 D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte 216 (295)
T PF00113_consen 162 DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTE 216 (295)
T ss_dssp -HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHH
T ss_pred chHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHH
Confidence 9999999999998 9999999999999999999999999999999999999985
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=333.99 Aligned_cols=260 Identities=20% Similarity=0.239 Sum_probs=197.5
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
||++|++... ++.|+|+|| |++ |+||+.. . ..++..+++.|+|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi~----------G~GE~~~----------~---~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGTV----------GYANTTG----------G---PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCCe----------EEecCCC----------c---hHHHHHHHHHHHHHhCCCC
Confidence 6899997432 689999999 986 9998621 1 1234457788999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.+++++|+.|++.....+++++...|++|||+||||+.||.+|+|||+||| |..++++|+ |.+.. + ..
T Consensus 51 p~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLG---G~~r~~i~~--y~~~~-~--~~--- 119 (341)
T cd03327 51 PSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLG---GRTRDKIPA--YASGL-Y--PT--- 119 (341)
T ss_pred chHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcC---CCcCCceEE--EEECC-C--CC---
Confidence 9999999999976422233345556799999999999999999999999999 766778776 44321 1 11
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~ 283 (394)
+. +...+++.++..+||+++| .|.|. +..-+ ..+.+.+.++++++|+++ | +++.|+
T Consensus 120 ~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~-----~~~~~-~~~~~~d~~~v~avr~~~---g--~~~~l~ 175 (341)
T cd03327 120 DL---------DELPDEAKEYLKEGYRGMK----MRFGY-----GPSDG-HAGLRKNVELVRAIREAV---G--YDVDLM 175 (341)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ECCCC-----CCCcc-hHHHHHHHHHHHHHHHHh---C--CCCcEE
Confidence 11 2235677777788899998 45331 10000 012233455666666665 3 489999
Q ss_pred EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCcc
Q 016156 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (394)
Q Consensus 284 iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~ 363 (394)
+|+ |+.| +.++++++ .+.+++|++.|||||++++|+++|++|++++++||++||.
T Consensus 176 vDa--------n~~~---------------~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~- 230 (341)
T cd03327 176 LDC--------YMSW---------------NLNYAIKM-ARALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEH- 230 (341)
T ss_pred EEC--------CCCC---------------CHHHHHHH-HHHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccC-
Confidence 999 4544 56788875 4558999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 364 VTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++|+|++++||||+
T Consensus 231 ~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~ 261 (341)
T cd03327 231 EYTVYGFKRLLEGRAVDILQPDVNWVGGITE 261 (341)
T ss_pred ccCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 4679999999999999999999999999985
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=327.31 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=185.9
Q ss_pred ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 61 PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 61 ~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
..|.|+|+|+|++ |+||+ |.+ ..+...+++.++|.|+|+||.++++||+.|.+....
T Consensus 29 ~~v~V~v~~~G~~----------G~Ge~----------~~~---~~~~~~i~~~~~p~liG~d~~~~~~l~~~~~~~~~~ 85 (352)
T cd03328 29 TLVLVEVRAGGRT----------GLGYT----------YAD---AAAAALVDGLLAPVVEGRDALDPPAAWEAMQRAVRN 85 (352)
T ss_pred eEEEEEEEcCCcE----------EEeCC----------CCh---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Confidence 3578999866765 88874 222 233445778899999999999999999999873211
Q ss_pred CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 141 PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 141 ~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
...+++...|++|||+||||+.||.+|+|||+||| | .++++|+ |.+ ++... .+. +...++
T Consensus 86 ~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLG---g-~~~~v~~--y~s--~~~~~---~~~---------e~~~~~ 145 (352)
T cd03328 86 AGRPGVAAMAISAVDIALWDLKARLLGLPLARLLG---R-AHDSVPV--YGS--GGFTS---YDD---------DRLREQ 145 (352)
T ss_pred cCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---C-CCCCeEE--EEe--cCCCC---CCH---------HHHHHH
Confidence 22234545799999999999999999999999999 6 4567776 443 22111 111 224567
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.++..+||+++| .|.| . +.+.+.++++.+|+++ | +++.|++|+ |+.|
T Consensus 146 a~~~~~~Gf~~~K----ikvg-------~------~~~~d~~~v~~vRe~~---G--~~~~l~vDa--------N~~~-- 193 (352)
T cd03328 146 LSGWVAQGIPRVK----MKIG-------R------DPRRDPDRVAAARRAI---G--PDAELFVDA--------NGAY-- 193 (352)
T ss_pred HHHHHHCCCCEEE----eecC-------C------CHHHHHHHHHHHHHHc---C--CCCeEEEEC--------CCCC--
Confidence 7777778898888 4422 1 1123355566666655 3 489999999 5655
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhh--cCCeEEecCccccCHHHHHHHHhcCC
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSS--VDIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~--~~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
|.++++++. +.+++|++.|||||++++|+++|++|+++ +++||++||. +.+.++++++++.++
T Consensus 194 -------------~~~~A~~~~-~~l~~~~~~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~-~~~~~~~~~li~~~a 258 (352)
T cd03328 194 -------------SRKQALALA-RAFADEGVTWFEEPVSSDDLAGLRLVRERGPAGMDIAAGEY-AYTLAYFRRLLEAHA 258 (352)
T ss_pred -------------CHHHHHHHH-HHHHHhCcchhhCCCChhhHHHHHHHHhhCCCCCCEEeccc-ccCHHHHHHHHHcCC
Confidence 567888864 45899999999999999999999999999 7899999997 567999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 259 ~div~~d~~~~GGit~ 274 (352)
T cd03328 259 VDVLQADVTRCGGVTG 274 (352)
T ss_pred CCEEecCccccCCHHH
Confidence 9999999999999985
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.45 Aligned_cols=263 Identities=17% Similarity=0.250 Sum_probs=200.4
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.+- .+.+ ...|.|+|+|+ |++ |+||+. .|.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~----------G~Ge~~--------~~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVT----------GHSYLF--------TYTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCe----------EEEeee--------cCCCCcHHHHHHH
Confidence 689999988772 1222 35789999999 986 999852 2445555555554
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
++ .++|.|+|+++ +.+++|+.|.+.....+.+++...|++|||+||||+.||.+|+|||+||| |. ++++|+ |
T Consensus 63 ~~-~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlG---g~-~~~v~~--y 134 (355)
T cd03321 63 LD-DMAALLVGEPL-APAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLG---GN-PRPVQA--Y 134 (355)
T ss_pred HH-HHHHHhCCCCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCCeeE--E
Confidence 44 69999999986 67889888876321122234556799999999999999999999999999 65 455554 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++.+ +. ++..+++.++..+||+++| .|.| .++.+.+.+.++++|++
T Consensus 135 ~s~~~~-------~~---------~~~~~~a~~~~~~Gf~~~K----iKvg------------~~~~~~d~~~v~air~~ 182 (355)
T cd03321 135 DSHGLD-------GA---------KLATERAVTAAEEGFHAVK----TKIG------------YPTADEDLAVVRSIRQA 182 (355)
T ss_pred EeCCCC-------hH---------HHHHHHHHHHHHhhhHHHh----hhcC------------CCChHhHHHHHHHHHHh
Confidence 543211 11 2346788888889999999 4533 12333445666666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.| +.++++++..+ +++|++.|||||++++|+++|++|+
T Consensus 183 ~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~l~ 233 (355)
T cd03321 183 V---G--DGVGLMVDY--------NQSL---------------TVPEAIERGQA-LDQEGLTWIEEPTLQHDYEGHARIA 233 (355)
T ss_pred h---C--CCCEEEEeC--------CCCc---------------CHHHHHHHHHH-HHcCCCCEEECCCCCcCHHHHHHHH
Confidence 5 3 489999999 5544 56788886555 7999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 234 ~~~~ipia~~E~-~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~ 276 (355)
T cd03321 234 SALRTPVQMGEN-WLGPEEMFKALSAGACDLVMPDLMKIGGVTG 276 (355)
T ss_pred HhcCCCEEEcCC-CcCHHHHHHHHHhCCCCeEecCHhhhCCHHH
Confidence 999999999997 5689999999999999999999999999984
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=326.49 Aligned_cols=273 Identities=17% Similarity=0.244 Sum_probs=201.6
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|+...+ ..+++.+.|+|+|+ |++ |+||+.. .+.+ ..+...+++.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~~----------G~GE~~~---------~~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGVT----------GLGDATL---------NGRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCCe----------EEEeccc---------CCch-HHHHHHHHHHHHHHcCCC
Confidence 89999998655 34456899999999 986 9999631 1222 233455778899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|.+. ...+.+.+...|++|||+||||+.||.+|+|||+||| |..++++|+ |++.. +.
T Consensus 59 d~~~~e~~~~~l~~~-~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLG---G~~r~~v~~--y~~~~-~~----- 126 (404)
T PRK15072 59 DAHRIEDIWQYLYRG-AYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLG---GASREGVMV--YGHAN-GR----- 126 (404)
T ss_pred ChhHHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCceEE--EEeCC-CC-----
Confidence 999999999999762 1233334556799999999999999999999999999 766677776 44321 10
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCc---ccCCCC-C--CCCCC----------------CCh
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDAC---NVGDEG-G--FAPNV----------------QDN 260 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~---~vg~~g-~--~~~~~----------------~~~ 260 (394)
+.++ ..+++.++..+||+++| .|.|.... ...+.+ + +.+.. +.+
T Consensus 127 -~~~~---------~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 192 (404)
T PRK15072 127 -DIDE---------LLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFV 192 (404)
T ss_pred -CHHH---------HHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccHHHHHHH
Confidence 1222 35677777778899998 45441100 000000 0 00100 111
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
.+.+++||+++ | +++.|++|+ |+.| |.++++++.. .+++|++.|||||+++
T Consensus 193 ~~~v~avre~~---G--~~~~l~vDa--------N~~w---------------~~~~A~~~~~-~l~~~~l~~iEeP~~~ 243 (404)
T PRK15072 193 PKLFEAVRNKF---G--FDLHLLHDV--------HHRL---------------TPIEAARLGK-SLEPYRLFWLEDPTPA 243 (404)
T ss_pred HHHHHHHHhhh---C--CCceEEEEC--------CCCC---------------CHHHHHHHHH-hccccCCcEEECCCCc
Confidence 34666666665 3 489999999 4544 5678888644 4899999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|++++++||++||. ..++++++++++.+++|++|+|++++||||+
T Consensus 244 ~d~~~~~~L~~~~~iPIa~dEs-~~~~~~~~~li~~~a~dii~~d~~~~GGit~ 296 (404)
T PRK15072 244 ENQEAFRLIRQHTTTPLAVGEV-FNSIWDCKQLIEEQLIDYIRTTVTHAGGITH 296 (404)
T ss_pred cCHHHHHHHHhcCCCCEEeCcC-ccCHHHHHHHHHcCCCCEEecCccccCcHHH
Confidence 9999999999999999999997 4679999999999999999999999999984
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=317.40 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=180.8
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
.++.|+|+|+ |++ |+||+. .++ .+...+++.|+|.|+|+||.+++++|+.|++...
T Consensus 57 ~~vlVrI~td~G~~----------G~Ge~~----------~~~---~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~ 113 (394)
T PRK15440 57 GTLVVEVEAENGQV----------GFAVST----------AGE---MGAFIVEKHLNRFIEGKCVSDIELIWDQMLNATL 113 (394)
T ss_pred ceEEEEEEECCCCE----------EEEeCC----------CcH---HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhcc
Confidence 5789999999 886 899842 111 2234577889999999999999999999976422
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
....+++..+|++|||+||||+.||.+|+|||+||| |..++++|+ |++ ++ . .+
T Consensus 114 ~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~--~~-~-------------------~~ 166 (394)
T PRK15440 114 YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLG---GAVRDELQF--YAT--GA-R-------------------PD 166 (394)
T ss_pred ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCCCeeEE--Eec--CC-C-------------------hH
Confidence 223334556799999999999999999999999999 766778775 432 21 0 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCC-CCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGD-EGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~-~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
.+. ..||+++| .|.| .|. +| ..+++.+.++++.+|+++ | +|+.|++|| |+.|
T Consensus 167 ~a~---~~Gf~~~K----ik~~-----~g~~~g--~~~~~~di~~v~avReav---G--~d~~l~vDa--------N~~~ 219 (394)
T PRK15440 167 LAK---EMGFIGGK----MPLH-----HGPADG--DAGLRKNAAMVADMREKV---G--DDFWLMLDC--------WMSL 219 (394)
T ss_pred HHH---hCCCCEEE----EcCC-----cCcccc--hHHHHHHHHHHHHHHHhh---C--CCCeEEEEC--------CCCC
Confidence 111 34788887 4432 110 11 112233455666666665 3 489999999 5545
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhc
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~ 376 (394)
|.++++++ .+.+++|++.|||||++++|++++++|+++++ +||++||. ..++++++++++.
T Consensus 220 ---------------~~~~Ai~~-~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~-~~~~~~~~~li~~ 282 (394)
T PRK15440 220 ---------------DVNYATKL-AHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEH-EATLQGFRTLLEM 282 (394)
T ss_pred ---------------CHHHHHHH-HHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCC-ccCHHHHHHHHHc
Confidence 56788885 45589999999999999999999999999977 78999997 4679999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+|++++||||+
T Consensus 283 ~a~Divq~d~~~~GGit~ 300 (394)
T PRK15440 283 GCIDIIQPDVGWCGGLTE 300 (394)
T ss_pred CCCCEEeCCccccCCHHH
Confidence 999999999999999985
|
|
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=313.08 Aligned_cols=252 Identities=16% Similarity=0.237 Sum_probs=195.0
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
||++|+.... +.+++.+.|+|+|+ |++ |+||+.. .+. ...+...|++.|+|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~~----------G~GE~~~---------~~~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGVT----------GLGDATL---------NGR-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCCe----------EEEeccc---------CCC-HHHHHHHHHHHHHHHcCCCC
Confidence 6899998433 34466799999999 886 9998631 111 22345567888999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.+++.+|+.|... .....+.....|++|||+||||+.||.+|+|||+||| |..++++|+ |++.. + .
T Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~--ya~~~-~------~ 125 (361)
T cd03322 59 ANRIEDIWQYLYRG-AYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLG---GKSRDGIMV--YSHAS-G------R 125 (361)
T ss_pred hhHHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcC---CCccCeeeE--EEeCC-C------C
Confidence 99999999999762 1122223445699999999999999999999999999 766677776 44321 1 0
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEE
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~ 283 (394)
+.+ ...+++.++..+||+++| .| + .+.++++|+++ | +++.|+
T Consensus 126 ~~~---------~~~~~a~~~~~~Gf~~~K----iK-------v-------------~~~v~avre~~---G--~~~~l~ 167 (361)
T cd03322 126 DIP---------ELLEAVERHLAQGYRAIR----VQ-------L-------------PKLFEAVREKF---G--FEFHLL 167 (361)
T ss_pred CHH---------HHHHHHHHHHHcCCCeEe----eC-------H-------------HHHHHHHHhcc---C--CCceEE
Confidence 111 234666666677888887 22 1 34667777665 3 489999
Q ss_pred EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCcc
Q 016156 284 MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363 (394)
Q Consensus 284 iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~ 363 (394)
+|+ |+.| |.++++++. +.+++|++.|||||++++|+++|++|++++++||++||.
T Consensus 168 vDa--------N~~w---------------~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~- 222 (361)
T cd03322 168 HDV--------HHRL---------------TPNQAARFG-KDVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEV- 222 (361)
T ss_pred EEC--------CCCC---------------CHHHHHHHH-HHhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccC-
Confidence 999 5544 567888764 458999999999999999999999999999999999997
Q ss_pred ccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 364 VTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 364 ~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++|+|++++||||+
T Consensus 223 ~~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 253 (361)
T cd03322 223 FNSIWDWQNLIQERLIDYIRTTVSHAGGITP 253 (361)
T ss_pred CcCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 5679999999999999999999999999984
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=311.70 Aligned_cols=266 Identities=16% Similarity=0.186 Sum_probs=196.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|+|++|+++.+ .. .++.|+|+|+ |++ |+||+.. .+ ....+...++ .++|.|+|+
T Consensus 1 mkI~~i~~~~~-~~---~~vlV~v~t~dG~~----------G~GE~~~---------~~-~~~~~~~~~~-~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRV-PP---RWLFLKIETDEGIV----------GWGEPVV---------EG-RARTVEAAVH-ELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEE-CC---CEEEEEEEECCCCe----------EEecccc---------CC-chHHHHHHHH-HHHHHhCCC
Confidence 79999999877 22 3588999999 986 9998632 11 1223333344 699999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|+.. ...+.+.....|++|||+||||+.||.+|+|||+||| |+.++++|+ |.+++++
T Consensus 56 d~~~~~~~~~~l~~~-~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLG---g~~r~~i~~--~~~~~~~------ 123 (382)
T PRK14017 56 DPRRIEDHWQVMYRG-GFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLG---GLVRDRIRV--YSWIGGD------ 123 (382)
T ss_pred CHHHHHHHHHHHHHh-cccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeeE--eEeCCCC------
Confidence 999999999999652 1122222335699999999999999999999999999 765677776 4433211
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
+.+ ...+++.++..+||+.+| .|.|.. .+..++ ..+++.+.++++++|+++ | +++.|
T Consensus 124 -~~~---------~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g--~~~~l 180 (382)
T PRK14017 124 -RPA---------DVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---G--PEIGI 180 (382)
T ss_pred -CHH---------HHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---C--CCCeE
Confidence 112 235677777778899888 442210 000000 011233455566666655 3 48999
Q ss_pred EEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc
Q 016156 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (394)
Q Consensus 283 ~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~ 362 (394)
++|+ |+.| |.++++++. +.++++++.|||||++++|++++++|++++++||++||.
T Consensus 181 ~vDa--------N~~w---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs 236 (382)
T PRK14017 181 GVDF--------HGRV---------------HKPMAKVLA-KELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGER 236 (382)
T ss_pred EEEC--------CCCC---------------CHHHHHHHH-HhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCc
Confidence 9999 5655 466888754 458999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 363 LVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 363 ~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++|+|++++||||+
T Consensus 237 -~~~~~~~~~li~~~a~d~v~~d~~~~GGit~ 267 (382)
T PRK14017 237 -LFSRWDFKRVLEAGGVDIIQPDLSHAGGITE 267 (382)
T ss_pred -cCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 5779999999999999999999999999974
|
|
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=310.44 Aligned_cols=246 Identities=21% Similarity=0.278 Sum_probs=187.1
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
..+.|+|+|+ |++ |+||+.... +...+. .... + .+++.++|+||.+++.+|+.|....
T Consensus 30 ~~v~v~i~~d~G~~----------G~GE~~~~~------~~~~~~-~~~~-~--~~~~~l~g~d~~~i~~~~~~~~~~~- 88 (372)
T COG4948 30 TRVIVEITTDDGIV----------GWGEAVPGG------RARYGE-EAEA-V--LLAPLLIGRDPFDIERIWQKLYRAG- 88 (372)
T ss_pred eEEEEEEEECCCce----------eeccccCcc------cccchh-hhhH-H--HHHHHhcCCCHHHHHHHHHHHHHhc-
Confidence 4799999999 986 999974321 111111 1111 1 5899999999999999999998742
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
..+.+++..+|++|||+||||+.||.+|+|||+||| |..++++++ |++..++ .. ..+...
T Consensus 89 ~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~--y~~~~~~------~~---------~~e~~~ 148 (372)
T COG4948 89 FARRGGITMAAISAVDIALWDLAGKALGVPVYKLLG---GKVRDEVRA--YASGGGG------ED---------PEEMAA 148 (372)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CceeeeEEE--EEecCCC------CC---------CHHHHH
Confidence 222456667899999999999999999999999999 776677665 4442221 00 112233
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC-CcEEEEecccccccccCCe
Q 016156 220 EALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 220 ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~ 297 (394)
++.+... +||+.+| .|.| ..+.+.+.++++++|+++ | ++.|++|+ |+.
T Consensus 149 ~~~~~~~~~G~~~~K----lk~g------------~~~~~~d~~~v~avRe~~------g~~~~l~iDa--------n~~ 198 (372)
T COG4948 149 EAARALVELGFKALK----LKVG------------VGDGDEDLERVRALREAV------GDDVRLMVDA--------NGG 198 (372)
T ss_pred HHHHHHHhcCCceEE----ecCC------------CCchHHHHHHHHHHHHHh------CCCceEEEeC--------CCC
Confidence 3444444 5898888 4533 122224467788888877 6 89999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |..+++++ .+.+++|+|.|||||++++|++++++|++.+.+||+.||. +.+.++++++++.+
T Consensus 199 ~---------------~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~PIa~gEs-~~~~~~~~~l~~~~ 261 (372)
T COG4948 199 W---------------TLEEAIRL-ARALEEYGLEWIEEPLPPDDLEGLRELRAATSTPIAAGES-VYTRWDFRRLLEAG 261 (372)
T ss_pred c---------------CHHHHHHH-HHHhcccCcceEECCCCccCHHHHHHHHhcCCCCEecCcc-cccHHHHHHHHHcC
Confidence 5 46678875 4558999999999999999999999999998899999997 57899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 262 a~div~~d~~~~GGite 278 (372)
T COG4948 262 AVDIVQPDLARVGGITE 278 (372)
T ss_pred CCCeecCCccccCCHHH
Confidence 99999999999999985
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=305.60 Aligned_cols=262 Identities=18% Similarity=0.210 Sum_probs=193.8
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
+|++|+.+.+ + .+.+.|+|+|+ |++ |+||+... + ....+...+++ |+|.|+|+|
T Consensus 1 ~I~~i~~~~~-~---~~~~~V~i~~~~G~~----------G~GE~~~~---------~-~~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV-P---PRWLFVKIETDEGVV----------GWGEPTVE---------G-KARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE-C---CCEEEEEEEECCCCE----------EEeccccC---------C-cchHHHHHHHH-HHHHhCCCC
Confidence 5889998766 2 35799999999 986 99987321 1 12233444566 999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCC
Q 016156 124 IRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNL 203 (394)
Q Consensus 124 p~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l 203 (394)
|.+++++|+.|... .....+....+|++|||+||||+.||.+|+|||++|| |..++++|++ .+++++
T Consensus 56 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLG---g~~~~~i~~~--~~~~~~------- 122 (352)
T cd03325 56 PMNIEHHWQVMYRG-GFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLG---GQVRDRVRVY--SWIGGD------- 122 (352)
T ss_pred HHHHHHHHHHHHHh-cCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccceeEEE--EeCCCC-------
Confidence 99999999999652 1122222335699999999999999999999999999 7556777764 332211
Q ss_pred cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC---CCCCChHHHHHHHHHHHHHcCCCCCc
Q 016156 204 AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFA---PNVQDNREGLVLLTDAIEKAGYTGKI 280 (394)
Q Consensus 204 ~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~---~~~~~~~~~l~~v~~Av~~ag~~gdi 280 (394)
+.+ ...+++.++..+||+.+| .|.|. ...+. .+.+.+.+.++.+|+++ | +++
T Consensus 123 ~~~---------~~~~~~~~~~~~Gf~~~K----iKvg~-------~~~~~~~~~~~~~D~~~i~avr~~~---g--~~~ 177 (352)
T cd03325 123 RPS---------DVAEAARARREAGFTAVK----MNATE-------ELQWIDTSKKVDAAVERVAALREAV---G--PDI 177 (352)
T ss_pred CHH---------HHHHHHHHHHHcCCCEEE----ecCCC-------CcccCCCHHHHHHHHHHHHHHHHhh---C--CCC
Confidence 111 134566666677888888 45331 11111 11223344555555554 4 589
Q ss_pred EEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEec
Q 016156 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGD 360 (394)
Q Consensus 281 ~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gd 360 (394)
.|++|+ |+.| |.++++++.. .++++++.|||||++++|++++++|++++++||++|
T Consensus 178 ~l~vDa--------N~~~---------------~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~d 233 (352)
T cd03325 178 DIGVDF--------HGRV---------------SKPMAKDLAK-ELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATG 233 (352)
T ss_pred EEEEEC--------CCCC---------------CHHHHHHHHH-hccccCCcEEECCCCccCHHHHHHHHHhCCCCEEec
Confidence 999999 5655 5678888644 489999999999999999999999999999999999
Q ss_pred CccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 361 DLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 361 e~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|. +.++++++++++.+++|++|+|++++||+|+
T Consensus 234 Es-~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~ 266 (352)
T cd03325 234 ER-LFSRWDFKELLEDGAVDIIQPDISHAGGITE 266 (352)
T ss_pred cc-ccCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 97 5689999999999999999999999999984
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=310.96 Aligned_cols=266 Identities=17% Similarity=0.177 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEe-------cC---CC-C---ceEEEEEEEC--CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHH
Q 016156 44 AKVKSVKARQII-------DS---RG-N---PTVEVDLITD--DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNA 107 (394)
Q Consensus 44 ~~I~~V~~r~v~-------~~---~g-~---~tv~V~V~td--G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a 107 (394)
.+|++|+++.+- .. .. . ..+.|+|+|| |++ |+||+.. .+.+...+
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~----------G~Ge~~~---------~~~~~~~~ 61 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLK----------GHGLTFT---------IGRGNEIV 61 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCE----------EEEEecc---------CCCchHHH
Confidence 378999988872 11 11 1 3689999999 665 9998732 12223333
Q ss_pred HHHhHHhHhhhhcCCCCCCHHHHHHHHHH-hcCC----C-C-CCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC
Q 016156 108 VKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGT----P-N-KSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (394)
Q Consensus 108 ~~~I~~~l~p~LiG~dp~~~e~Id~~l~~-~~~~----~-~-~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~ 180 (394)
.. +.+.++|.|+|+||.+++++++.|++ +... + . .+++...|++|||+||||++||.+|+|||+||| |.
T Consensus 62 ~~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLG---g~ 137 (415)
T cd03324 62 CA-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLV---DM 137 (415)
T ss_pred HH-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhc---CC
Confidence 33 34679999999999999666665554 2110 1 1 123435799999999999999999999999999 53
Q ss_pred cc-----------------------------------------cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 181 KE-----------------------------------------LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 181 ~~-----------------------------------------~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
.+ +++|+ |++ ++|+.. .+. +...+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--y~~-~~~~~~---~~~---------~~~~~ 202 (415)
T cd03324 138 TPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPA--YTT-SAGWLG---YSD---------EKLRR 202 (415)
T ss_pred CHHHhhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCce--eec-CCcccC---CCH---------HHHHH
Confidence 22 34444 432 222110 111 22356
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.++..+||+++| .|.| .+.+.+.++++.+|+++ | +++.|++|+ |+.|
T Consensus 203 ~a~~~~~~Gf~~~K----iKvg-------------~~~~~d~~~v~avRe~v---G--~~~~L~vDa--------N~~w- 251 (415)
T cd03324 203 LCKEALAQGFTHFK----LKVG-------------ADLEDDIRRCRLAREVI---G--PDNKLMIDA--------NQRW- 251 (415)
T ss_pred HHHHHHHcCCCEEE----EeCC-------------CCHHHHHHHHHHHHHhc---C--CCCeEEEEC--------CCCC-
Confidence 77777778898888 4422 12223345566666655 4 489999999 5544
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc---CCeEEecCccccCHHHHHHHHhc
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV---DIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~---~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
+.++++++. +.+++|++.|||||++++|+++|++|++++ ++||++||. +.++++++++++.
T Consensus 252 --------------~~~~A~~~~-~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs-~~~~~~~~~ll~~ 315 (415)
T cd03324 252 --------------DVPEAIEWV-KQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEH-CQNRVVFKQLLQA 315 (415)
T ss_pred --------------CHHHHHHHH-HHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCc-cCCHHHHHHHHHc
Confidence 567888864 458999999999999999999999999998 699999997 4679999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+|++++||||+
T Consensus 316 ~a~dil~~d~~~~GGit~ 333 (415)
T cd03324 316 GAIDVVQIDSCRLGGVNE 333 (415)
T ss_pred CCCCEEEeCccccCCHHH
Confidence 999999999999999985
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=309.43 Aligned_cols=253 Identities=18% Similarity=0.206 Sum_probs=185.1
Q ss_pred CceEEEEEEEC-CeeeeeccCCC-CCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCC----------CH
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGA-STGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR----------DQ 127 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~-~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~----------~~ 127 (394)
..++.|+|+|| |.. |. .+|+||+.. +.... ...|++.++|.|+|+||. ++
T Consensus 26 ~~~~lV~v~td~~~~------G~~~~G~Ge~~~----------~~~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~~~~~ 87 (385)
T cd03326 26 LTTSLVAVVTDVVRD------GRPVVGYGFDSI----------GRYAQ--GGLLRERFIPRLLAAAPDSLLDDAGGNLDP 87 (385)
T ss_pred cEEEEEEEEeccccC------CCceeEEEeccC----------CchhH--HHHHHHHHHHHhcCCChHHhhhcccccCCH
Confidence 35689999999 442 21 359998631 11111 234788899999999999 44
Q ss_pred HHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc-----ccccceeeEEeecCCcCCCCC
Q 016156 128 AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK-----ELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 128 e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~-----~~~iP~p~~~~i~gG~~~~~~ 202 (394)
+++|+.|+... ....++....|+||||+||||+.||.+|+|||+||| |+. ++++|+ |.+ ++...+.
T Consensus 88 ~~l~~~~~~~~-~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~~~~~~~~~v~~--y~~--~~~~~~~- 158 (385)
T cd03326 88 ARAWAAMMRNE-KPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLA---RRYGRGQADPRVPV--YAA--GGYYYPG- 158 (385)
T ss_pred HHHHHHHHhcC-ccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CcccCCCCCCeEEE--EEe--cCCCCCC-
Confidence 99999997521 112223445799999999999999999999999999 532 356665 543 2211100
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
.+. +...+++.++..+||+++| .|.| ..+.+.+.++++.+|+++ | +++.|
T Consensus 159 ~~~---------~~~~~~a~~~~~~Gf~~~K----ikvg------------~~~~~~di~~v~avRe~~---G--~~~~l 208 (385)
T cd03326 159 DDL---------GRLRDEMRRYLDRGYTVVK----IKIG------------GAPLDEDLRRIEAALDVL---G--DGARL 208 (385)
T ss_pred CCH---------HHHHHHHHHHHHCCCCEEE----EeCC------------CCCHHHHHHHHHHHHHhc---C--CCCeE
Confidence 011 1235677777777888888 4433 122233355566666555 4 48999
Q ss_pred EEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc
Q 016156 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (394)
Q Consensus 283 ~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~ 362 (394)
++|+ |+.| |.++++++ .+.+++|++.|||||++++|++++++|++++++||++||.
T Consensus 209 ~vDa--------N~~w---------------~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs 264 (385)
T cd03326 209 AVDA--------NGRF---------------DLETAIAY-AKALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGEN 264 (385)
T ss_pred EEEC--------CCCC---------------CHHHHHHH-HHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCC
Confidence 9999 5655 56788885 4558999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHhcCCC----cEEeeccccccccCC
Q 016156 363 LVTNPKRIAEAIQKKSC----NGLLLKVNHLFEIKS 394 (394)
Q Consensus 363 ~~~~~~~~~~~i~~~a~----d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++ |++|+|++++||||+
T Consensus 265 -~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~ 299 (385)
T cd03326 265 -LFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPE 299 (385)
T ss_pred -cCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHH
Confidence 5679999999999998 999999999999985
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=307.00 Aligned_cols=249 Identities=21% Similarity=0.261 Sum_probs=190.6
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
.+.+.|+|+|+ |.+ |+||+.... .|+|.+++...+...+++.++|.|+|+|+.+++++|+.|...-
T Consensus 27 ~~~~~V~v~t~~G~~----------G~Ge~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 93 (368)
T TIGR02534 27 QTLVLVRIRTEDGVI----------GYGEGTTIG---GLWWGGESPETIKANIDTYLAPVLVGRDATEIAAIMADLEKVV 93 (368)
T ss_pred ccEEEEEEEECCCCe----------EEEecCCCC---CCccCCCCHHHHHHHHHHhhHHHHcCCChhhHHHHHHHHHHHh
Confidence 46789999999 886 999974321 1346666777767778888999999999999999999887631
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.. ...|++|||+||||+.||.+|+|||+||| |..++++|++ .+++.+ +.. ..+
T Consensus 94 -~~-----~~~a~said~AlwDl~gK~~g~Pv~~LLG---g~~r~~v~~~--~~~~~~-------~~~---------~~~ 146 (368)
T TIGR02534 94 -AG-----NRFAKAAVDTALHDAQARRLGVPVSELLG---GRVRDSVDVT--WTLASG-------DTD---------RDI 146 (368)
T ss_pred -cC-----CchHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceEEE--EEEeCC-------CHH---------HHH
Confidence 11 12489999999999999999999999999 7666777764 332211 001 123
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 219 AEALRMG-SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 219 ~ea~~~~-~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
+++.++. .+||+++| .|.| ..+.+.+.++++.+|+++ | +++.|++|+ |+.
T Consensus 147 ~~~~~~~~~~Gf~~~K----iKvg------------~~~~~~d~~~v~~~re~~---g--~~~~l~~Da--------N~~ 197 (368)
T TIGR02534 147 AEAEERIEEKRHRSFK----LKIG------------ARDPADDVAHVVAIAKAL---G--DRASVRVDV--------NAA 197 (368)
T ss_pred HHHHHHHHhcCcceEE----EEeC------------CCCcHHHHHHHHHHHHhc---C--CCcEEEEEC--------CCC
Confidence 4444444 35788887 5533 122333455666666655 3 489999999 555
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |.++++++. +.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+
T Consensus 198 ~---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~-~~~~~~~~~~~~~~ 260 (368)
T TIGR02534 198 W---------------DERTALHYL-PQLADAGVELIEQPTPAENREALARLTRRFNVPIMADES-VTGPADALAIAKAS 260 (368)
T ss_pred C---------------CHHHHHHHH-HHHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCcc-cCCHHHHHHHHHhC
Confidence 5 567888754 458999999999999999999999999999999999997 57899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 261 ~~d~~~~d~~~~GGi~~ 277 (368)
T TIGR02534 261 AADVFALKTTKSGGLLE 277 (368)
T ss_pred CCCEEEEcccccCCHHH
Confidence 99999999999999974
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=306.25 Aligned_cols=249 Identities=20% Similarity=0.263 Sum_probs=191.7
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
...+.|+|+|+ |++ |+||+..... +.|.+++...++..+++.++|.|+|+||.+.+++|+.|.+..
T Consensus 28 ~~~~~V~v~t~~G~~----------G~GE~~~~~~---~~~~~~~~~~~~~~l~~~~~~~l~G~~~~~~~~~~~~l~~~~ 94 (365)
T cd03318 28 QSLVLVRLTTSDGVV----------GIGEATTPGG---PAWGGESPETIKAIIDRYLAPLLIGRDATNIGAAMALLDRAV 94 (365)
T ss_pred cceEEEEEEECCCCe----------EEEecCCCCC---CccCCCCHHHHHHHHHHhhHHHHcCCChHHHHHHHHHHHHHh
Confidence 35689999999 886 9999743211 235566666667778888999999999999999999997631
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.. ...|++|||+||||+.||.+|+|+|++|| |..++++|++ .+++.+ +. ....
T Consensus 95 -~~-----~~~a~said~AlwDl~gK~~g~Pl~~LLG---g~~~~~v~~~--~~~~~~-------~~---------~~~~ 147 (365)
T cd03318 95 -AG-----NLFAKAAIEMALLDAQGRRLGLPVSELLG---GRVRDSLPVA--WTLASG-------DT---------ERDI 147 (365)
T ss_pred -cC-----CccHHHHHHHHHHHHHHhHcCCCHHHHcC---CCcCCceEEE--EEEeCC-------CH---------HHHH
Confidence 11 13589999999999999999999999999 7656777764 333221 01 1234
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 219 AEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 219 ~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
+++.++..+| |+++| .|.| ..+.+.+.+.++++|+++ | +++.|++|+ |+.
T Consensus 148 ~~~~~~~~~G~f~~~K----iKvg------------~~~~~~d~~~v~avr~~~---g--~~~~l~iDa--------N~~ 198 (365)
T cd03318 148 AEAEEMLEAGRHRRFK----LKMG------------ARPPADDLAHVEAIAKAL---G--DRASVRVDV--------NQA 198 (365)
T ss_pred HHHHHHHhCCCceEEE----EEeC------------CCChHHHHHHHHHHHHHc---C--CCcEEEEEC--------CCC
Confidence 5666677778 88888 4533 122333345555555554 3 389999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |.++++++. +.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+
T Consensus 199 ~---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~-~~~~~~~~~~i~~~ 261 (365)
T cd03318 199 W---------------DESTAIRAL-PRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADES-VSGPADAFELARRG 261 (365)
T ss_pred C---------------CHHHHHHHH-HHHHhcCcceeeCCCCcccHHHHHHHHhhcCCCEEcCcc-cCCHHHHHHHHHhC
Confidence 5 467888754 458999999999999999999999999999999999997 56899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 262 ~~d~~~~d~~~~GGit~ 278 (365)
T cd03318 262 AADVFSLKIAKSGGLRR 278 (365)
T ss_pred CCCeEEEeecccCCHHH
Confidence 99999999999999984
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=304.29 Aligned_cols=246 Identities=15% Similarity=0.128 Sum_probs=183.2
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
..+.|+|+|+ |++ |+||... .+ .+...+.+.|+|.|+|+||.+.+++|+.|.+..
T Consensus 33 ~~~~Vri~td~G~~----------G~G~~~~-------~~------~~~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~- 88 (368)
T cd03329 33 KLALLTIETDEGAK----------GHAFGGR-------PV------TDPALVDRFLKKVLIGQDPLDRERLWQDLWRLQ- 88 (368)
T ss_pred eEEEEEEEECCCCe----------EEEecCC-------ch------hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh-
Confidence 5799999999 986 8887421 01 123456778999999999999999999998631
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
. +....|++|||+||||+.||.+|+|||+||| | .++++|+ |.+++.+....+..+.+ ...+
T Consensus 89 -~---~~~~~A~said~AlwDl~gk~~g~Pl~~LLG---g-~~~~v~~--y~s~~~~~~~~~~~~~~---------~~~~ 149 (368)
T cd03329 89 -R---GLTDRGLGLVDIALWDLAGKYLGLPVHRLLG---G-YREKIPA--YASTMVGDDLEGLESPE---------AYAD 149 (368)
T ss_pred -c---CcchhHHHHHHHHHHHHhhhhcCCcHHHHhh---c-cccceeE--EEecCCCcccccCCCHH---------HHHH
Confidence 1 1334699999999999999999999999999 6 4567765 44432221000000111 2345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.++..+||+.+| .| ++. ....+++.+.++.||+++ | +++.|++|+ |+.|
T Consensus 150 ~a~~~~~~Gf~~~K----ik-------~~~----~~~~~~di~~i~~vR~~~---G--~~~~l~vDa--------n~~~- 200 (368)
T cd03329 150 FAEECKALGYRAIK----LH-------PWG----PGVVRRDLKACLAVREAV---G--PDMRLMHDG--------AHWY- 200 (368)
T ss_pred HHHHHHHcCCCEEE----Ee-------cCC----chhHHHHHHHHHHHHHHh---C--CCCeEEEEC--------CCCc-
Confidence 55556666787777 33 110 111233466677777766 3 489999999 5555
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccC-HHHHHHHHhcCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTN-PKRIAEAIQKKS 378 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~-~~~~~~~i~~~a 378 (394)
+.++++++. +.+++|++.|+|||++++|++++++|++++++||++||.. .+ +++++++++.++
T Consensus 201 --------------~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~-~~~~~~~~~~i~~~a 264 (368)
T cd03329 201 --------------SRADALRLG-RALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHS-RGALESRADWVLAGA 264 (368)
T ss_pred --------------CHHHHHHHH-HHhhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcc-cCcHHHHHHHHHhCC
Confidence 567888754 4589999999999999999999999999999999999974 56 999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 265 ~d~v~~d~~~~GGit~ 280 (368)
T cd03329 265 TDFLRADVNLVGGITG 280 (368)
T ss_pred CCEEecCccccCCHHH
Confidence 9999999999999984
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=295.28 Aligned_cols=267 Identities=15% Similarity=0.202 Sum_probs=177.3
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhH----HHHHHHhHHhHhhhhcCCCCCCHHHHHHHH
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV----LNAVKNINDILGPKLVGVDIRDQAEVDAIM 134 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~----~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l 134 (394)
...|.|+|+|| |++ ||||+....- +.+.+++. ..+...|++.|+|.|+|+||.+++++|+.|
T Consensus 12 ~~~vlV~I~tddG~~----------G~GEa~~~~~---~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m 78 (369)
T cd03314 12 GEAISVMLVLEDGQV----------AVGDCAAVQY---SGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVL 78 (369)
T ss_pred CcEEEEEEEECCCCE----------EEEecccccc---cCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHH
Confidence 35799999999 986 9999742100 00122222 334567888999999999999999999999
Q ss_pred HHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhccc--CCcccccceeeEEeecCCcCCCCCCcccceeecc
Q 016156 135 LEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELS--GTKELVMPVPAFNVINGGSHAGNNLAMQEFMILP 212 (394)
Q Consensus 135 ~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~--g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p 212 (394)
++.. ..++.....|++|||+||||+.||.+|+|||+|||+.. |..++++| +|.+++ +. . ..+
T Consensus 79 ~~~~--~~g~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~--~y~~~~-~~-~-----~~~----- 142 (369)
T cd03314 79 DKMR--LDGNRLHTAIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVP--IFAQSG-DD-R-----YIN----- 142 (369)
T ss_pred HHHh--hcCCcchhhHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceE--EEEEec-Cc-c-----ccc-----
Confidence 7632 11112334578999999999999999999999998311 22345554 565432 10 0 000
Q ss_pred CCCCCHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccc
Q 016156 213 VGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEF 291 (394)
Q Consensus 213 ~~~~~~~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~ 291 (394)
.....+++.++..++ |+.+| .| |....++- .. ....++.++. ++..| +++.|++|+
T Consensus 143 -~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~~---~~~~~~~v~a-vr~~G--~~~~l~vDa----- 199 (369)
T cd03314 143 -VDKMILKGADVLPHALINNVE----EK-GPKGEKLL------EY---VKWLSDRIRK-LGRPG--YHPILHIDV----- 199 (369)
T ss_pred -HHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------Hh---HHHHHHHHHH-HhhcC--CCCEEEEEc-----
Confidence 011233333343333 55555 23 32111110 11 1222333322 22334 489999999
Q ss_pred cccCCeeeccCCCCCCCCCccc--CHHHHHHHHHHhhhcC-C--ceeeeCCCCCCC----HHHHHHHHhhc-----CCeE
Q 016156 292 FTKDGNYDLNFKKQPNDGAHVL--SAQSLGDLYKEFVRDF-P--IVSIEDPFDQDD----WSSWASLQSSV-----DIQL 357 (394)
Q Consensus 292 ~~~ng~Y~~~~~~~~~~~~~~~--t~~e~i~~~~~~l~~~-~--i~~iEdPl~~~D----~~~~~~L~~~~-----~i~I 357 (394)
|+.| .+.| |+++++++... ++++ + +.|||||++++| +++|++|++++ ++||
T Consensus 200 ---N~~w-----------~~~~~~~~~~A~~~~~~-Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPI 264 (369)
T cd03314 200 ---YGTI-----------GQAFDPDPDRAADYLAT-LEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRI 264 (369)
T ss_pred ---CCcc-----------ccccCCCHHHHHHHHHH-HHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 4432 1245 67899987655 6654 4 789999999966 89999999994 7999
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||. ++++++++++++.++||++|+|++++||||+
T Consensus 265 a~dEs-~~t~~d~~~li~~~a~div~~kl~k~GGIt~ 300 (369)
T cd03314 265 VADEW-CNTLEDIRDFADAGAAHMVQIKTPDLGGIDN 300 (369)
T ss_pred EecCC-cCCHHHHHHHHHhCCCCEEEecchhcCCHHH
Confidence 99997 5689999999999999999999999999985
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=298.66 Aligned_cols=242 Identities=21% Similarity=0.260 Sum_probs=188.9
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
..+.|+|+|+ |.+ |+||+.... .+.|.+++...+...+++.+.|.|+|+|+.+++++|+.|.+..+
T Consensus 25 ~~~~Vrv~t~~G~~----------G~GE~~~~~---~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~~ 91 (354)
T cd03317 25 EFLIVELTDEEGIT----------GYGEVVAFE---GPFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLAPIKG 91 (354)
T ss_pred eEEEEEEEECCCCe----------EEEecCCCC---CCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcC
Confidence 4688999998 886 999974321 12466777777778888889999999999999999999976321
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
...|++|||+||||+.||.+|+|+|++|| | .++++|+ |.+++.+ +. .++..+
T Consensus 92 -------~~~a~aaid~AlwDl~gk~~g~Pv~~LLG---g-~~~~v~~--~~s~~~~-------~~--------~~~~~~ 143 (354)
T cd03317 92 -------NNMAKAGLEMAVWDLYAKAQGQSLAQYLG---G-TRDSIPV--GVSIGIQ-------DD--------VEQLLK 143 (354)
T ss_pred -------ChHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCeEEe--eEEEeCC-------Cc--------HHHHHH
Confidence 13599999999999999999999999999 6 4567765 4443211 00 022456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.+...+||+++| .|.| + +.+.++++.||+++ |++.|++|+ |+.|+
T Consensus 144 ~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~------g~~~l~lDa--------N~~~~ 190 (354)
T cd03317 144 QIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF------PDIPLMADA--------NSAYT 190 (354)
T ss_pred HHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC------CCCeEEEEC--------CCCCC
Confidence 77777777888887 4422 1 12355666666654 689999999 66664
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
..++ .+ .+.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+++
T Consensus 191 ---------------~~~a-~~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs-~~~~~~~~~~~~~~~~ 252 (354)
T cd03317 191 ---------------LADI-PL-LKRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDES-IQSAEDARKAIELGAC 252 (354)
T ss_pred ---------------HHHH-HH-HHHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCc-cCCHHHHHHHHHcCCC
Confidence 4454 34 4558999999999999999999999999999999999996 5789999999999999
Q ss_pred cEEeeccccccccCC
Q 016156 380 NGLLLKVNHLFEIKS 394 (394)
Q Consensus 380 d~i~ik~~~~Ggit~ 394 (394)
|++|+|++++||||+
T Consensus 253 d~~~ik~~~~GGit~ 267 (354)
T cd03317 253 KIINIKPGRVGGLTE 267 (354)
T ss_pred CEEEecccccCCHHH
Confidence 999999999999974
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=291.39 Aligned_cols=241 Identities=17% Similarity=0.189 Sum_probs=186.7
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+..+.|+|+|+ |++ |+||+....- +.|.++....+...+++.++|.|+| ++.+++++++.|....
T Consensus 21 ~~~~lV~v~~~~G~~----------G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~ 86 (324)
T TIGR01928 21 RDCLIIELIDDKGNA----------GFGEVVAFQT---PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVRSLK 86 (324)
T ss_pred CcEEEEEEEECCCCe----------EEEeccccCC---CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcc
Confidence 46789999999 986 9999743210 2355666777777788889999999 9999999999986421
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
+ ...|++|||+||||+.||.+|+|||++|| | .++++|+ |.++ |.. + ++...
T Consensus 87 -----~--~~~a~said~AlwDl~gk~~g~Pl~~llG---g-~~~~i~~--y~~~--~~~-----~---------~~~~~ 137 (324)
T TIGR01928 87 -----G--TPMAKAGLEMALWDMYHKLPSFSLAYGQG---K-LRDKAPA--GAVS--GLA-----N---------DEQML 137 (324)
T ss_pred -----C--CcHHHHHHHHHHHHHHHhhhCCcHHHHhC---C-CCCeEEE--eEEc--CCC-----C---------HHHHH
Confidence 1 12599999999999999999999999999 6 4567665 4442 210 1 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.+...+||+.+| .|.| + +.+.+.++.+|+++ +++.|++|+ |+.|
T Consensus 138 ~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~------~~~~l~vDa--------N~~~ 184 (324)
T TIGR01928 138 KQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF------PQIPLVIDA--------NESY 184 (324)
T ss_pred HHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC------CCCcEEEEC--------CCCC
Confidence 677777778898888 4422 1 12245566665554 689999999 5666
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCC
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
+ .+++ .+ .+.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.++
T Consensus 185 ~---------------~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs-~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 185 D---------------LQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTITPICLDES-ITSLDDARNLIELGN 246 (324)
T ss_pred C---------------HHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCC-cCCHHHHHHHHHcCC
Confidence 4 4443 33 4668999999999999999999999999999999999996 678999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 247 ~dvi~~d~~~~GGit~ 262 (324)
T TIGR01928 247 VKVINIKPGRLGGLTE 262 (324)
T ss_pred CCEEEeCcchhcCHHH
Confidence 9999999999999974
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=300.56 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=187.2
Q ss_pred ceEEEEEEEEE-------ecCCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI-------IDSRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v-------~~~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
+.|+.++..+| ++..| ...+.|+|+|| |++ |+||+.. ++++ ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~----------G~GEa~~----------~~~~---~~~ 60 (441)
T TIGR03247 4 PVVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGNT----------GVGEVPG----------GEKI---RAT 60 (441)
T ss_pred CEEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCCe----------EEEeCCC----------cHHH---HHH
Confidence 45666666666 22222 35789999999 986 9998621 2222 233
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcC---CCCCCc------cchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDG---TPNKSK------IGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~---~~~~~~------ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~ 181 (394)
++ .++|.|+|+||.++++||+.|+.... ..+.+. ....|++|||+||||++||.+|+|||+|||+ |..
T Consensus 61 l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGg--g~~ 137 (441)
T TIGR03247 61 LE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGE--GQQ 137 (441)
T ss_pred HH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCC--CCc
Confidence 54 69999999999999999999976210 111121 1346999999999999999999999999983 344
Q ss_pred ccccceeeEEeecCCcC-------CC------CCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCccc
Q 016156 182 ELVMPVPAFNVINGGSH-------AG------NNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNV 247 (394)
Q Consensus 182 ~~~iP~p~~~~i~gG~~-------~~------~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~v 247 (394)
++++|++.+.. +.|.. .. +-....+- ....++...+++.++..+ ||+++| .|.|
T Consensus 138 r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG------ 205 (441)
T TIGR03247 138 RDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHE-EALTPEAVVRLAEAAYDRYGFRDFK----LKGG------ 205 (441)
T ss_pred cceEEEeeeee-eccccccccccccccccccccccccccc-cCCCHHHHHHHHHHHHHhcCCCEEE----EecC------
Confidence 67777653221 11100 00 00000000 000112234566655544 888888 4533
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~ 327 (394)
. ++.+.+.++++++|+++ +++.|++|+ |+.| |.++++++..+ ++
T Consensus 206 -~-----~~~~~Di~~v~avRea~------~d~~L~vDA--------N~~w---------------t~~~Ai~~~~~-Le 249 (441)
T TIGR03247 206 -V-----LRGEEEIEAVTALAKRF------PQARITLDP--------NGAW---------------SLDEAIALCKD-LK 249 (441)
T ss_pred -C-----CChHHHHHHHHHHHHhC------CCCeEEEEC--------CCCC---------------CHHHHHHHHHH-hh
Confidence 1 11223345555555543 689999999 5655 56788886544 78
Q ss_pred cCCceeeeCCCCCCC----HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 328 DFPIVSIEDPFDQDD----WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 328 ~~~i~~iEdPl~~~D----~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+| +.|||||++++| ++++++|++++++||++||. ++++++++++++.+++|++++|+. +||||+
T Consensus 250 ~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs-~~~~~~~~~li~~~avdi~~~d~~-~gGIt~ 317 (441)
T TIGR03247 250 GV-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMI-ATDWRQMGHALQLQAVDIPLADPH-FWTMQG 317 (441)
T ss_pred hh-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCc-cCCHHHHHHHHHhCCCCEEeccCC-cchHHH
Confidence 89 999999999999 99999999999999999996 578999999999999999999995 667874
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=293.52 Aligned_cols=270 Identities=18% Similarity=0.220 Sum_probs=196.4
Q ss_pred eEEEEEEEEEec--------CCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhH
Q 016156 45 KVKSVKARQIID--------SRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDIL 115 (394)
Q Consensus 45 ~I~~V~~r~v~~--------~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l 115 (394)
+|++|++..+-- ......+.|+|+|+ |++ |+||+.... . ...+...|++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~----------G~GE~~~~~-------~---~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGIT----------GWGEAYPGG-------R---PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCE----------EEEeccCCC-------C---chHHHHHHHHHH
Confidence 477777766621 11256899999999 886 999974311 1 234455677789
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecC
Q 016156 116 GPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVING 195 (394)
Q Consensus 116 ~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~g 195 (394)
+|.|+|+|+.+.+++|+.|.+.......++.-..|++|||+||||+.||.+|+|||++|| |..+.++|+ |.++++
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llG---g~~~~~v~~--~~~~~~ 135 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLG---GKVRDRVRV--YASGGG 135 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccC---CccCCceee--EEecCC
Confidence 999999999999999999986421111122335799999999999999999999999999 654567775 444322
Q ss_pred CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 016156 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275 (394)
Q Consensus 196 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag 275 (394)
+. .+.+ ...+++.++..+||+.+| .|.| .........+.+.+.++.+|+++ |
T Consensus 136 ~~-----~~~~---------~~~~~a~~~~~~Gf~~~K----ik~g-------~~~~~~~~~~~d~~~v~~ir~~~---g 187 (357)
T cd03316 136 YD-----DSPE---------ELAEEAKRAVAEGFTAVK----LKVG-------GPDSGGEDLREDLARVRAVREAV---G 187 (357)
T ss_pred CC-----CCHH---------HHHHHHHHHHHcCCCEEE----EcCC-------CCCcchHHHHHHHHHHHHHHHhh---C
Confidence 10 0111 234566666667788887 4433 10000000222355666666665 3
Q ss_pred CCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCC
Q 016156 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDI 355 (394)
Q Consensus 276 ~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i 355 (394)
+++.|++|+ |+.| +.++++++. +.++++++.|||||++++|++++++|++++++
T Consensus 188 --~~~~l~vDa--------N~~~---------------~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~i 241 (357)
T cd03316 188 --PDVDLMVDA--------NGRW---------------DLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARLRQATSV 241 (357)
T ss_pred --CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHHHHhCCC
Confidence 489999999 5544 567888754 45899999999999999999999999999999
Q ss_pred eEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 356 QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 356 ~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++||. +.++++++++++.+++|++|+|++++||+|+
T Consensus 242 pi~~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 242 PIAAGEN-LYTRWEFRDLLEAGAVDIIQPDVTKVGGITE 279 (357)
T ss_pred CEEeccc-cccHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 9999997 5779999999999999999999999999974
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=293.75 Aligned_cols=271 Identities=17% Similarity=0.169 Sum_probs=186.5
Q ss_pred eEEEEEEEEEec--------CC----CCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 45 KVKSVKARQIID--------SR----GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 45 ~I~~V~~r~v~~--------~~----g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
+|++|++.++.- +. ..+.+.|+|+|| |++ |+||+. .+ ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~----------G~Ge~~----------~~---~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNT----------GVGESP----------GG---AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCe----------eccccC----------CC---HHHHHHH
Confidence 588888876621 11 146899999999 986 999852 11 1222234
Q ss_pred HHhHhhhhcCCCC-CCHHHHHHHHHHhcCCCCCC---------ccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc
Q 016156 112 NDILGPKLVGVDI-RDQAEVDAIMLEIDGTPNKS---------KIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (394)
Q Consensus 112 ~~~l~p~LiG~dp-~~~e~Id~~l~~~~~~~~~~---------~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~ 181 (394)
. .++|.|+|+++ .+.+.+|+.|.+.......+ ++...|++|||+||||+.||.+|+|||+||| |..
T Consensus 58 ~-~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG---G~~ 133 (395)
T cd03323 58 L-EAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLG---GGQ 133 (395)
T ss_pred H-HHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhC---CCc
Confidence 3 47889999888 58889999998632111111 2346799999999999999999999999999 765
Q ss_pred ccccceeeEEeec--CCcCCCC-CCcccc--eeeccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCC
Q 016156 182 ELVMPVPAFNVIN--GGSHAGN-NLAMQE--FMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAP 255 (394)
Q Consensus 182 ~~~iP~p~~~~i~--gG~~~~~-~l~~~e--~~i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~ 255 (394)
++++|++ +++. ++.+..+ ..+... +...+..+...+++.++.. +||+++| .|.| . .
T Consensus 134 r~~v~~y--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG-------~-----~ 195 (395)
T cd03323 134 RDSVPFL--AYLFYKGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGG-------V-----L 195 (395)
T ss_pred cCeEEEE--EEeeeccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecC-------C-----C
Confidence 6787764 4332 1101000 000000 0000111223445555553 3788887 4433 1 1
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee
Q 016156 256 NVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335 (394)
Q Consensus 256 ~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE 335 (394)
+.+.+.++++++|+++ +++.|++|+ |+.| +.++++++.. .+++ ++.|||
T Consensus 196 ~~~~di~~v~avRea~------~~~~l~vDa--------N~~w---------------~~~~A~~~~~-~l~~-~l~~iE 244 (395)
T cd03323 196 PGEEEIEAVKALAEAF------PGARLRLDP--------NGAW---------------SLETAIRLAK-ELEG-VLAYLE 244 (395)
T ss_pred CHHHHHHHHHHHHHhC------CCCcEEEeC--------CCCc---------------CHHHHHHHHH-hcCc-CCCEEE
Confidence 2223345566666554 689999999 5555 5678887644 5888 999999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 336 dPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++ |++++++|++++++||++||. +++.++++++++.+++|++|+|++++||||+
T Consensus 245 eP~~--d~~~~~~L~~~~~~PIa~dEs-~~~~~~~~~~i~~~avdil~~d~~~~GGit~ 300 (395)
T cd03323 245 DPCG--GREGMAEFRRATGLPLATNMI-VTDFRQLGHAIQLNAVDIPLADHHFWGGMRG 300 (395)
T ss_pred CCCC--CHHHHHHHHHhcCCCEEcCCc-ccCHHHHHHHHHcCCCcEEeeccccccCHHH
Confidence 9998 999999999999999999997 5679999999999999999999999999984
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=283.84 Aligned_cols=263 Identities=18% Similarity=0.255 Sum_probs=187.9
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchh-------HHHHHHHhHHhHhhhhcCCCCCCHHHHHH
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKG-------VLNAVKNINDILGPKLVGVDIRDQAEVDA 132 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~-------~~~a~~~I~~~l~p~LiG~dp~~~e~Id~ 132 (394)
..|.|+|+|+ |.+ ||||+.. +.|.+++ ...+...|++.|+|.|+|+|+.+.+++++
T Consensus 50 ~~vlV~i~tddG~~----------G~GE~~~------~~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~ 113 (408)
T TIGR01502 50 ESLSVLLVLEDGQV----------VHGDCAA------VQYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAE 113 (408)
T ss_pred cEEEEEEEECCCCE----------EEEEeec------ceeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHH
Confidence 4799999999 986 9999753 1355543 66677788999999999999999999999
Q ss_pred HHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC--CcccccceeeEEeecCCcCCCCCCcccceee
Q 016156 133 IMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210 (394)
Q Consensus 133 ~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g--~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i 210 (394)
.|.... .+.+ +-..+++|||+||||+.||.+|+|||++||+..| ..++++| +|.+++. .+.. +.
T Consensus 114 ~~~~~~--~~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp--~~~s~g~-~~~~---~~----- 179 (408)
T TIGR01502 114 VFEKMT--VNRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVP--VFAQSGD-DRYD---NV----- 179 (408)
T ss_pred HHHHHh--hcCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCcee--EEEEeec-cCCC---CH-----
Confidence 998742 1112 3345679999999999999999999999983111 2344555 4554321 0000 01
Q ss_pred ccCCCCCHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC-CcEEEEeccc
Q 016156 211 LPVGATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG-KINIGMDVAA 288 (394)
Q Consensus 211 ~p~~~~~~~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~g-di~l~iD~aa 288 (394)
+..+.++.++..+| |+.+|+ .| . +...+.+.++.+++.++.++..| ++.|++|+
T Consensus 180 ----d~m~~~a~~~~~~G~~~~~Kk-----vG-------~------~~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDa-- 235 (408)
T TIGR01502 180 ----DKMILKEVDVLPHGLINSVEE-----LG-------L------DGEKLLEYVKWLRDRIIKLGREGYAPIFHIDV-- 235 (408)
T ss_pred ----HHHHHHHHHHHhccCccceee-----ec-------C------CHHHhhhhHHHHHHHHHHhhccCCCCeEEEEc--
Confidence 22355666676665 777761 23 1 11112344555556655444113 78999999
Q ss_pred ccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhh---cCCceeeeCCCCCCC----HHHHHHHHhh-----cCCe
Q 016156 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR---DFPIVSIEDPFDQDD----WSSWASLQSS-----VDIQ 356 (394)
Q Consensus 289 ~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~---~~~i~~iEdPl~~~D----~~~~~~L~~~-----~~i~ 356 (394)
||+--. -..||++++++++.++-+ +|++ |||||++++| +++|++|+++ +++|
T Consensus 236 ------N~~~~~---------~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vP 299 (408)
T TIGR01502 236 ------YGTIGE---------AFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAE 299 (408)
T ss_pred ------CCCccc---------ccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCce
Confidence 441110 124578899998777433 4887 9999999866 9999999998 4799
Q ss_pred EEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 357 LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 357 I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++||. ++++++++++++.++||++|+|++++||||+
T Consensus 300 I~aDEs-~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~ 336 (408)
T TIGR01502 300 IVADEW-CNTVEDVKFFTDAKAGHMVQIKTPDVGGVNN 336 (408)
T ss_pred EEecCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 999997 6789999999999999999999999999984
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=242.71 Aligned_cols=130 Identities=61% Similarity=0.985 Sum_probs=114.2
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|+|+|+|.+|+.+++|+++.+|+|+++..++++||+.|+|.|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999 855 9999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHh
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHI 174 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lL 174 (394)
||.||++||+.|.++|+|.+++.+|.|++.|+|+|++.++|+.+++|||+||
T Consensus 81 ~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999999999999999999999999999999999999999997
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=273.12 Aligned_cols=242 Identities=19% Similarity=0.255 Sum_probs=181.5
Q ss_pred ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 61 PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 61 ~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
..+.|+|+|+|++ |+||+.... .|.++....+...+++ ++|.|+|+||. .+++|+.|....
T Consensus 26 ~~~~v~v~t~G~~----------G~GE~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~-- 86 (316)
T cd03319 26 ENVIVEIELDGIT----------GYGEAAPTP-----RVTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQELL-- 86 (316)
T ss_pred eEEEEEEEECCEE----------EEEeecCCC-----CCCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHHHhc--
Confidence 4688999998665 999975422 2345555666666665 59999999999 999999997631
Q ss_pred CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 141 PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 141 ~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
.+ ...|++|||+||||+.||.+|+|+|++|| |..++++|++ ..+.++ +.++ ..++
T Consensus 87 ~~----~~~a~~aid~AlwDl~gk~~g~pv~~ll~---g~~~~~~~~~--~~~~~~-------~~~~---------~~~~ 141 (316)
T cd03319 87 PG----NGAARAAVDIALWDLEAKLLGLPLYQLWG---GGAPRPLETD--YTISID-------TPEA---------MAAA 141 (316)
T ss_pred cC----ChHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCCceeE--EEEeCC-------CHHH---------HHHH
Confidence 11 23599999999999999999999999976 4456677763 323221 1111 2445
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.++..+||+.+| .|.| . +.+.+.+.++.+|+++ |++.|++|+ |+.|
T Consensus 142 ~~~~~~~Gf~~iK----ik~g-------~------~~~~d~~~v~~lr~~~------g~~~l~vD~--------n~~~-- 188 (316)
T cd03319 142 AKKAAKRGFPLLK----IKLG-------G------DLEDDIERIRAIREAA------PDARLRVDA--------NQGW-- 188 (316)
T ss_pred HHHHHHcCCCEEE----EEeC-------C------ChhhHHHHHHHHHHhC------CCCeEEEeC--------CCCc--
Confidence 5556666788887 4533 1 1123344555555444 478999999 4544
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
+.++++++. +.++++++.|||||++++|++++++|++++++||++||. +.++++++++++.+++|
T Consensus 189 -------------~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~-~~~~~~~~~~~~~~~~d 253 (316)
T cd03319 189 -------------TPEEAVELL-RELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADES-CFSAADAARLAGGGAYD 253 (316)
T ss_pred -------------CHHHHHHHH-HHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCC-CCCHHHHHHHHhcCCCC
Confidence 457888754 558999999999999999999999999999999999996 57899999999999999
Q ss_pred EEeeccccccccCC
Q 016156 381 GLLLKVNHLFEIKS 394 (394)
Q Consensus 381 ~i~ik~~~~Ggit~ 394 (394)
++|+|++++||+|+
T Consensus 254 ~v~~~~~~~GGi~~ 267 (316)
T cd03319 254 GINIKLMKTGGLTE 267 (316)
T ss_pred EEEEeccccCCHHH
Confidence 99999999999974
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=249.15 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=166.4
Q ss_pred CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 60 ~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
+.++.|+|+++|.+ |+||+.++. .| +++...+...++ .+.|.|+ . ..+.+.+++.+ +
T Consensus 27 ~~~~lv~l~~~G~~----------G~GE~~p~~-----~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~~~~~~----~ 83 (321)
T PRK15129 27 ARVVVVELEEEGIK----------GTGECTPYP-----RY-GESDASVMAQIM-SVVPQLE-K-GLTREALQKLL----P 83 (321)
T ss_pred eeEEEEEEEeCCeE----------EEEeeCCcC-----CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHHHHhhc----c
Confidence 45789999844875 999985432 34 466777776664 5889997 2 22333333321 1
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
+ ..|++|||+||||+.||..|+|||++|| |..++++|+ +.+++-+ + +....+
T Consensus 84 --~-----~~a~~aid~AlwDl~gk~~~~pl~~llG---g~~~~~i~~--~~~~~~~-------~---------~~~~~~ 135 (321)
T PRK15129 84 --A-----GAARNAVDCALWDLAARQQQQSLAQLIG---ITLPETVTT--AQTVVIG-------T---------PEQMAN 135 (321)
T ss_pred --C-----hHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeE--EEEecCC-------C---------HHHHHH
Confidence 1 2699999999999999999999999999 655667765 3333211 1 122356
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
++.+...+||+++| .| ++ ++ .+.++++.+|+++ +++.|++|+ |+.|
T Consensus 136 ~~~~~~~~G~~~~K----lK-------v~------~~--~d~~~v~avr~~~------~~~~l~vDa--------N~~w- 181 (321)
T PRK15129 136 SASALWQAGAKLLK----VK-------LD------NH--LISERMVAIRSAV------PDATLIVDA--------NESW- 181 (321)
T ss_pred HHHHHHHcCCCEEE----Ee-------CC------Cc--hHHHHHHHHHHhC------CCCeEEEEC--------CCCC-
Confidence 66666677888887 44 22 11 1345676766665 689999999 5655
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
|.++++++. +.++++++.|||||++++|++++++++ .++||+.||. +.+++++++++ +++
T Consensus 182 --------------~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~l~~~~--~~~pia~dEs-~~~~~d~~~~~--~~~ 241 (321)
T PRK15129 182 --------------RAEGLAARC-QLLADLGVAMLEQPLPAQDDAALENFI--HPLPICADES-CHTRSSLKALK--GRY 241 (321)
T ss_pred --------------CHHHHHHHH-HHHHhcCceEEECCCCCCcHHHHHHhc--cCCCEecCCC-CCCHHHHHHHH--hhC
Confidence 466777754 448999999999999999999998775 4799999997 56799999984 799
Q ss_pred cEEeeccccccccCC
Q 016156 380 NGLLLKVNHLFEIKS 394 (394)
Q Consensus 380 d~i~ik~~~~Ggit~ 394 (394)
|++++|++++||||+
T Consensus 242 d~v~~k~~~~GGi~~ 256 (321)
T PRK15129 242 EMVNIKLDKTGGLTE 256 (321)
T ss_pred CEEEeCchhhCCHHH
Confidence 999999999999974
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-29 Score=237.77 Aligned_cols=175 Identities=17% Similarity=0.255 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHH
Q 016156 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230 (394)
Q Consensus 151 ~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~ 230 (394)
++|||+||||+.||.+|+|+|++|| | .++++|+ |.+++.+ +.+ ...+++.+...+||+
T Consensus 45 ~~aid~Al~Dl~gk~~g~pv~~llG---~-~~~~i~~--~~~~~~~-------~~~---------~~~~~~~~~~~~G~~ 102 (265)
T cd03315 45 KAAVDMALWDLWGKRLGVPVYLLLG---G-YRDRVRV--AHMLGLG-------EPA---------EVAEEARRALEAGFR 102 (265)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHcC---C-CCCceEE--EEEecCC-------CHH---------HHHHHHHHHHHCCCC
Confidence 7999999999999999999999999 5 4567766 4433221 111 234566666667788
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCC
Q 016156 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGA 310 (394)
Q Consensus 231 ~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~ 310 (394)
.+| .|.| . .+ +.+.+.++.||+++ | +++.|++|+ |+.|
T Consensus 103 ~~K----iKvg-------~----~~--~~d~~~v~~vr~~~---g--~~~~l~vDa--------n~~~------------ 140 (265)
T cd03315 103 TFK----LKVG-------R----DP--ARDVAVVAALREAV---G--DDAELRVDA--------NRGW------------ 140 (265)
T ss_pred EEE----EecC-------C----CH--HHHHHHHHHHHHhc---C--CCCEEEEeC--------CCCc------------
Confidence 787 4432 1 11 23345566666555 3 489999999 5544
Q ss_pred cccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccccc
Q 016156 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLF 390 (394)
Q Consensus 311 ~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~G 390 (394)
+.++++++. +.++++++.|||||++++|++++++|++++++||++||. +.++++++++++.+++|++++|++++|
T Consensus 141 ---~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~G 215 (265)
T cd03315 141 ---TPKQAIRAL-RALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADES-AFTPHDAFRELALGAADAVNIKTAKTG 215 (265)
T ss_pred ---CHHHHHHHH-HHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCC-CCCHHHHHHHHHhCCCCEEEEeccccc
Confidence 567888764 458899999999999999999999999999999999997 567999999999999999999999999
Q ss_pred ccCC
Q 016156 391 EIKS 394 (394)
Q Consensus 391 git~ 394 (394)
|||+
T Consensus 216 Gi~~ 219 (265)
T cd03315 216 GLTK 219 (265)
T ss_pred CHHH
Confidence 9974
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=222.21 Aligned_cols=141 Identities=23% Similarity=0.384 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHH
Q 016156 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230 (394)
Q Consensus 151 ~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~ 230 (394)
++|||+||||+.||.+|+|||++|| |..++++|++ . +
T Consensus 44 ~~aid~Al~Dl~gk~~~~pl~~llg---g~~~~~v~~~--~-------------------------~------------- 80 (229)
T cd00308 44 ISGIDMALWDLAAKALGVPLAELLG---GGSRDRVPAY--G-------------------------S------------- 80 (229)
T ss_pred HHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceecc--H-------------------------H-------------
Confidence 8999999999999999999999999 7656666652 1 0
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCC
Q 016156 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGA 310 (394)
Q Consensus 231 ~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~ 310 (394)
+ +.++.+|+++ | +++.|++|+ |+.|
T Consensus 81 -~-----------------------------~~i~~lr~~~---g--~~~~l~lDa--------N~~~------------ 105 (229)
T cd00308 81 -I-----------------------------ERVRAVREAF---G--PDARLAVDA--------NGAW------------ 105 (229)
T ss_pred -H-----------------------------HHHHHHHHHh---C--CCCeEEEEC--------CCCC------------
Confidence 1 1345567766 2 489999999 5655
Q ss_pred cccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccccc
Q 016156 311 HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLF 390 (394)
Q Consensus 311 ~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~G 390 (394)
+.+++++++.+ ++++++.|||||++++|+++|++|++++++||++||. +.++++++++++.+++|++|+|++++|
T Consensus 106 ---~~~~a~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs-~~~~~~~~~~~~~~~~d~~~~k~~~~G 180 (229)
T cd00308 106 ---TPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADES-VTTVDDALEALELGAVDILQIKPTRVG 180 (229)
T ss_pred ---CHHHHHHHHHH-hhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEecCccccC
Confidence 46788886554 8889999999999999999999999999999999996 577999999999999999999999999
Q ss_pred ccCC
Q 016156 391 EIKS 394 (394)
Q Consensus 391 git~ 394 (394)
|+|+
T Consensus 181 Gi~~ 184 (229)
T cd00308 181 GLTE 184 (229)
T ss_pred CHHH
Confidence 9974
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-27 Score=226.65 Aligned_cols=168 Identities=19% Similarity=0.228 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHH
Q 016156 150 AILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVY 229 (394)
Q Consensus 150 A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~ 229 (394)
|++|||+||||+.||.+| | |..++++|+ |.+++.+ +. ...+++.++..+||
T Consensus 48 a~aaid~AlwDl~gk~~g-------g---g~~~~~v~~--~~~~~~~-------~~----------~~~~~~~~~~~~Gf 98 (263)
T cd03320 48 LAFGIESALANLEALLVG-------F---TRPRNRIPV--NALLPAG-------DA----------AALGEAKAAYGGGY 98 (263)
T ss_pred HHHHHHHHHhcccccccC-------C---CCCccCcce--eEEecCC-------CH----------HHHHHHHHHHhCCC
Confidence 799999999999999999 6 655667766 4444321 00 12355666666788
Q ss_pred HHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCC
Q 016156 230 HILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDG 309 (394)
Q Consensus 230 ~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~ 309 (394)
+.+| .|.| ..+.+++.+.++.+|+++ | +++.|++|+ |+.|
T Consensus 99 ~~~K----iKvg------------~~~~~~d~~~v~~vr~~~---g--~~~~l~vDa--------N~~w----------- 138 (263)
T cd03320 99 RTVK----LKVG------------ATSFEEDLARLRALREAL---P--ADAKLRLDA--------NGGW----------- 138 (263)
T ss_pred CEEE----EEEC------------CCChHHHHHHHHHHHHHc---C--CCCeEEEeC--------CCCC-----------
Confidence 8888 4533 112233345566665554 3 489999999 5655
Q ss_pred CcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccc
Q 016156 310 AHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389 (394)
Q Consensus 310 ~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~ 389 (394)
+.++++++. +.+++|++.|||||++++|++++++|+ +++||++||. +.++++++++++.+++|++++|++++
T Consensus 139 ----~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~~PIa~dEs-~~~~~~~~~~~~~~~~d~v~~k~~~~ 210 (263)
T cd03320 139 ----SLEEALAFL-EALAAGRIEYIEQPLPPDDLAELRRLA--AGVPIALDES-LRRLDDPLALAAAGALGALVLKPALL 210 (263)
T ss_pred ----CHHHHHHHH-HhhcccCCceEECCCChHHHHHHHHhh--cCCCeeeCCc-cccccCHHHHHhcCCCCEEEECchhc
Confidence 467888754 458999999999999999999999999 7899999997 56799999999999999999999999
Q ss_pred cccCC
Q 016156 390 FEIKS 394 (394)
Q Consensus 390 Ggit~ 394 (394)
||||+
T Consensus 211 GGit~ 215 (263)
T cd03320 211 GGPRA 215 (263)
T ss_pred CCHHH
Confidence 99974
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=219.76 Aligned_cols=224 Identities=13% Similarity=0.149 Sum_probs=157.2
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+.++.|+|+++ |++ |+||+.+. |.|.+++.+.+...++ .+.|.|.+++ .+.+ ...+
T Consensus 28 ~~~~iV~l~~~~G~~----------G~GE~~p~-----p~~~~et~~~~~~~l~-~l~~~l~~~~---~~~~---~~~~- 84 (320)
T PRK02714 28 REGIILRLTDETGKI----------GWGEIAPL-----PWFGSETLEEALAFCQ-QLPGEITPEQ---IFSI---PDAL- 84 (320)
T ss_pred eEEEEEEEEeCCCCe----------EEEEecCC-----CCCCcccHHHHHHHHH-hccccCCHHH---HHhh---hhcC-
Confidence 46899999999 886 99998543 3688888888877665 4777775432 2222 1111
Q ss_pred CCCCCCccchhhHHHHHHHHHH-HhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCC
Q 016156 139 GTPNKSKIGANAILGVSLSVCR-AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATS 217 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwd-a~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~ 217 (394)
..+++|+|+| || +.++.. + . . ..++|.+..++. ....
T Consensus 85 ---------~~~~~aie~A-~d~~~~~~~--------~---~-~--~~~~~~~~~i~~------------------~~~~ 122 (320)
T PRK02714 85 ---------PACQFGFESA-LENESGSRS--------N---V-T--LNPLSYSALLPA------------------GEAA 122 (320)
T ss_pred ---------CHHHHHHHHH-HHHHhcccc--------c---C-C--cCCCceeeecCC------------------CHHH
Confidence 1579999999 66 433321 1 1 1 123443433321 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 218 ~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
.+++.++..+||+.+| .|.| . .+.+.+.++++.+|+++ | +++.|++|+ |+.
T Consensus 123 ~~~a~~~~~~G~~~~K----vKvG-------~-----~~~~~d~~~v~air~~~---g--~~~~l~vDa--------N~~ 173 (320)
T PRK02714 123 LQQWQTLWQQGYRTFK----WKIG-------V-----DPLEQELKIFEQLLERL---P--AGAKLRLDA--------NGG 173 (320)
T ss_pred HHHHHHHHHcCCCEEE----EEEC-------C-----CChHHHHHHHHHHHHhc---C--CCCEEEEEC--------CCC
Confidence 5677777777888888 4533 1 12222345555555554 3 489999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHH
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI 374 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i 374 (394)
| +.++++++.. .+++ |++.|||||++++|++++++|++++++||++||+ +.+++++++++
T Consensus 174 w---------------~~~~A~~~~~-~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~~Pia~DEs-~~~~~d~~~~~ 236 (320)
T PRK02714 174 L---------------SLEEAKRWLQ-LCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIALDES-VANLAQLQQCY 236 (320)
T ss_pred C---------------CHHHHHHHHH-HHhhccCCCccEEECCCCcccHHHHHHHHHhCCCCEEECCc-cCCHHHHHHHH
Confidence 5 4667777544 4666 8999999999999999999999999999999997 57899999999
Q ss_pred hcCCCcEEeeccccccccCC
Q 016156 375 QKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 375 ~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.+++|++++|++++||+|+
T Consensus 237 ~~~a~d~v~ik~~k~GGi~~ 256 (320)
T PRK02714 237 QQGWRGIFVIKPAIAGSPSR 256 (320)
T ss_pred HcCCCCEEEEcchhcCCHHH
Confidence 99999999999999999863
|
|
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=219.35 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=157.3
Q ss_pred ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 61 PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 61 ~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
.++.|+|+++|.+ |+||+..+ +.|.+++...+...+++ +.|.|+|+++.++.+. .
T Consensus 22 ~~~iv~l~~~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~~-l~~~l~~~~~~~~~~~---------~ 76 (307)
T TIGR01927 22 EGLIVRLTDEGRT----------GWGEIAPL-----PGFGTETLAEALDFCRA-LIEEITRGDIEAIDDQ---------L 76 (307)
T ss_pred eEEEEEEEECCcE----------EEEEeecC-----CCCCcccHHHHHHHHHH-HHHHhcccchhhcccc---------C
Confidence 5799999944876 99998653 35788899998888874 8899999987643210 0
Q ss_pred CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 141 PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 141 ~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
..+++|||+||||+.||. ++| .....|. ++ ++.| +. +...++
T Consensus 77 -------~~~~~aie~Al~Dl~~k~-~~~-----------~~~~~~~--~~-l~~~-------~~---------~~~~~~ 118 (307)
T TIGR01927 77 -------PSVAFGFESALIELESGD-ELP-----------PASNYYV--AL-LPAG-------DP---------ALLLLR 118 (307)
T ss_pred -------cHHHHHHHHHHHHHhcCC-CCC-----------cccccce--ee-ccCC-------CH---------HHHHHH
Confidence 257999999999999998 111 1112222 22 2111 01 112233
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.+ .+||+.+| .|.| . .+.+.+.+.++.||+++ | +++.|++|+ |+.|
T Consensus 119 ~~~--~~Gf~~~K----iKvG-------~-----~~~~~d~~~v~~vr~~~---g--~~~~l~vDa--------N~~w-- 165 (307)
T TIGR01927 119 SAK--AEGFRTFK----WKVG-------V-----GELAREGMLVNLLLEAL---P--DKAELRLDA--------NGGL-- 165 (307)
T ss_pred HHH--hCCCCEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---C--CCCeEEEeC--------CCCC--
Confidence 333 56787777 4533 1 12223345566665554 3 479999999 5655
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
|.++++++.. .+++ +++.|||||++.+ +++++|++++++||++||. +.++++++++++.+
T Consensus 166 -------------~~~~A~~~~~-~l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs-~~~~~d~~~~~~~~ 228 (307)
T TIGR01927 166 -------------SPDEAQQFLK-ALDPNLRGRIAFLEEPLPDA--DEMSAFSEATGTAIALDES-LWELPQLADEYGPG 228 (307)
T ss_pred -------------CHHHHHHHHH-hcccccCCCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCC-cCChHHHHHHHhcC
Confidence 5678887654 4787 8999999999776 9999999999999999997 46799999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++++|++++||+|+
T Consensus 229 ~~d~i~ik~~~~GGi~~ 245 (307)
T TIGR01927 229 WRGALVIKPAIIGSPAK 245 (307)
T ss_pred CCceEEECchhcCCHHH
Confidence 99999999999999974
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=254.57 Aligned_cols=259 Identities=13% Similarity=0.136 Sum_probs=172.7
Q ss_pred ceEEEEEEEEEe--------cCCC------CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhH---H
Q 016156 44 AKVKSVKARQII--------DSRG------NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV---L 105 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g------~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~---~ 105 (394)
|+|++|+.+.+- .+.| +..+.|+|+++ |.+ |+||+..+. +.+++. .
T Consensus 931 ~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~----------G~GEa~pl~------~~~et~~~~~ 994 (1655)
T PLN02980 931 CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSV----------GFGEVAPLE------IHEEDLLDVE 994 (1655)
T ss_pred ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCE----------EEEecCCCC------CCccccccHH
Confidence 999999999881 1222 46799999999 876 888875431 112221 1
Q ss_pred HHH----HHh----HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcc
Q 016156 106 NAV----KNI----NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQEL 177 (394)
Q Consensus 106 ~a~----~~I----~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~ 177 (394)
..+ ..+ .+.++|.|+|+++ +.+|+.|.... +.....|++|||+||||+.||.+|+|||++||
T Consensus 995 ~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~~~-----~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLG-- 1064 (1655)
T PLN02980 995 EQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGIPP-----SSIFPSVRCGLEMAILNAIAVRHGSSLLNILD-- 1064 (1655)
T ss_pred HHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHcCCcHHHHhC--
Confidence 111 112 1356899999954 44566663211 11234799999999999999999999999998
Q ss_pred cCCcc--------cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q 016156 178 SGTKE--------LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGD 249 (394)
Q Consensus 178 ~g~~~--------~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~ 249 (394)
|... .++|+ +..+ ++. + + .....+++.+...+||+.+| .|.| .
T Consensus 1065 -g~~~~~~~~~~~~~v~v--~~~~-~~~--~---~---------~~~~~~~a~~~~~~Gf~~~K----lKvG-------~ 1115 (1655)
T PLN02980 1065 -PYQKDENGSEQSHSVQI--CALL-DSN--G---S---------PLEVAYVARKLVEEGFSAIK----LKVG-------R 1115 (1655)
T ss_pred -CCCCCcceeccccceee--eecc-CCC--C---C---------HHHHHHHHHHHHHcCCCEEE----EecC-------C
Confidence 4211 12332 2221 110 0 1 12235566666677888887 4533 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC
Q 016156 250 EGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF 329 (394)
Q Consensus 250 ~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~ 329 (394)
..+.+.+.++++.||+++ | +++.|++|+ |+.| |.++++++.. .++++
T Consensus 1116 ----~~~~~~D~~~i~alRe~~---G--~~~~LrlDA--------N~~w---------------s~~~A~~~~~-~L~~~ 1162 (1655)
T PLN02980 1116 ----RVSPIQDAAVIQEVRKAV---G--YQIELRADA--------NRNW---------------TYEEAIEFGS-LVKSC 1162 (1655)
T ss_pred ----CCCHHHHHHHHHHHHHHc---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHhhc
Confidence 012222344555555554 3 489999999 5655 5678888654 48899
Q ss_pred CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHH-----HHHHHHhcCCCcEEeeccccccccCC
Q 016156 330 PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPK-----RIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 330 ~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~-----~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|.|||||++ +.+++++|++++++||++||.. .+.+ .+++.++.+++ .+++|++++||||+
T Consensus 1163 ~i~~iEqPl~--~~~~l~~l~~~~~iPIA~DEs~-~~~~~~~~~~~~~~i~~~~~-~i~iK~~~~GGit~ 1228 (1655)
T PLN02980 1163 NLKYIEEPVQ--DEDDLIKFCEETGLPVALDETI-DKFEECPLRMLTKYTHPGIV-AVVIKPSVVGGFEN 1228 (1655)
T ss_pred CCCEEECCCC--CHHHHHHHHHhCCCCEEeCCCc-CCcccchHHHHHHHHHCCCe-EEEeChhhhCCHHH
Confidence 9999999997 5799999999999999999974 4443 47777777655 78999999999974
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=198.87 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=151.3
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+.++.|+|+ + |++ |+||+..+ +.|.+++..++...+.+.+.|.+. .++.+.. .
T Consensus 27 ~~~viV~l~-d~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~~~~~~~~~-~~~~~~~-------~-- 80 (322)
T PRK05105 27 RDGLVVQLR-EGERE----------GWGEIAPL-----PGFSQETLEEAQEALLAWLNNWLA-GDCDDEL-------S-- 80 (322)
T ss_pred eeeEEEEEE-ECCcE----------EEEEeCCC-----CCCCccCHHHHHHHHHHHHHHhhc-Ccccccc-------c--
Confidence 467999996 7 876 99998553 358899999998889888888655 4443411 1
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.-..+..++++|+||+.||..+.|+|. .+++ +.| +. +...
T Consensus 81 -------~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------~~~l------~~~-------~~---------~~~~ 120 (322)
T PRK05105 81 -------QYPSVAFGLSCALAELAGTLPQAANYR-----------TAPL------CYG-------DP---------DELI 120 (322)
T ss_pred -------cCcHHHHHHHHHHHHhcCCCCCCCCcc-----------eeee------ecC-------CH---------HHHH
Confidence 112688999999999999988888752 1111 111 11 1134
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.++ +||+.+| .|.| . .+.+++.+.++.||+++ +++.|++|+ |+.|
T Consensus 121 ~~a~~~--~Gf~~~K----vKvG-------~-----~~~~~d~~~i~~vr~~~------~~~~l~vDa--------N~~w 168 (322)
T PRK05105 121 LKLADM--PGEKVAK----VKVG-------L-----YEAVRDGMLVNLLLEAI------PDLKLRLDA--------NRGW 168 (322)
T ss_pred HHHHHc--CCCCEEE----EEEC-------C-----CCHHHHHHHHHHHHHhC------CCCeEEEEC--------CCCC
Confidence 455554 6788887 4533 1 12222344555555443 689999999 5655
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHh
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~ 375 (394)
|.++++++..+ +++ +++.|||||++. .+.+++|++++++||+.||.. .++. ++..+
T Consensus 169 ---------------~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~~PIa~DEs~-~~~~-~~~~~- 227 (322)
T PRK05105 169 ---------------TLEKAQQFAKY-VPPDYRHRIAFLEEPCKT--PDDSRAFARATGIAIAWDESL-REPD-FQFEA- 227 (322)
T ss_pred ---------------CHHHHHHHHHH-hhhhcCCCccEEECCCCC--HHHHHHHHHhCCCCEEECCCC-Cchh-hhhhh-
Confidence 56788886554 787 999999999964 678999999999999999975 4564 55445
Q ss_pred cCCCcEEeeccccccccCC
Q 016156 376 KKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 376 ~~a~d~i~ik~~~~Ggit~ 394 (394)
.+++|++++|++++||||+
T Consensus 228 ~~~~d~i~ik~~k~GGi~~ 246 (322)
T PRK05105 228 EPGVRAIVIKPTLTGSLEK 246 (322)
T ss_pred cCCCCEEEECccccCCHHH
Confidence 7789999999999999974
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=126.06 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=79.5
Q ss_pred EEecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCH
Q 016156 53 QIIDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQ 127 (394)
Q Consensus 53 ~v~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~ 127 (394)
++..+.+ ++.+.|+|+|+ |.+ |+||+... .+ ........+.+.+.|.|+|+++.+.
T Consensus 15 Pf~~a~~t~~~~~~v~V~l~t~~G~~----------G~Ge~~~~--------~~-~~~~~~~~~~~~l~~~l~g~~~~~~ 75 (117)
T PF02746_consen 15 PFKTARGTVSEREFVLVRLETDDGVV----------GWGEAFPS--------PG-TAETVASALEDYLAPLLIGQDPDDI 75 (117)
T ss_dssp EEEETTEEEEEEEEEEEEEEETTSEE----------EEEEEESS--------SS-SHHHHHHHHHHTHHHHHTTSBTTGH
T ss_pred CEEeeCEEEEEeEEEEEEEEECCCCE----------EEEEeeCC--------cc-hhHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4545554 46899999999 987 99998542 11 3456666788889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 128 AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 128 e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+++|+.+.+.. .+ ...|++|||+||||+.||.+|+|||+|||
T Consensus 76 ~~~~~~~~~~~-~~-----~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 76 EDIWQELYRLI-KG-----NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHHT-SS-----HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHHhc-cc-----hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999997642 11 35799999999999999999999999997
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-16 Score=152.05 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh-hcCCceeeeC
Q 016156 258 QDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV-RDFPIVSIED 336 (394)
Q Consensus 258 ~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l-~~~~i~~iEd 336 (394)
+++.+.++.||+++ | +++.|++|+ |+.| |.++++++... + ++++|.||||
T Consensus 118 ~~Di~rv~avRe~l---G--pd~~LrvDA--------N~~w---------------s~~~Ai~~~~~-L~e~~~l~~iEq 168 (327)
T PRK02901 118 ADDVARVNAVRDAL---G--PDGRVRVDA--------NGGW---------------SVDEAVAAARA-LDADGPLEYVEQ 168 (327)
T ss_pred HHHHHHHHHHHHhc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHHH-hhhccCceEEec
Confidence 33455566666555 3 489999999 5655 56788886555 6 6799999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 337 PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 337 Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++. ++++++|++++++||++||+ +++.+++.++++.+++|++++|++++||||+
T Consensus 169 P~~~--~~~la~Lr~~~~vPIA~DEs-~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~ 223 (327)
T PRK02901 169 PCAT--VEELAELRRRVGVPIAADES-IRRAEDPLRVARAGAADVAVLKVAPLGGVRA 223 (327)
T ss_pred CCCC--HHHHHHHHHhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCcchhCCHHH
Confidence 9974 99999999999999999996 5679999999999999999999999999974
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=93.27 Aligned_cols=67 Identities=21% Similarity=0.419 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D 342 (394)
+++.+|+++ | +++.|++|+ |+.| |.++++++.. .+++| .|||||++++|
T Consensus 1 ri~avr~~~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~--~~iEeP~~~~d 49 (67)
T PF01188_consen 1 RIRAVREAV---G--PDIDLMVDA--------NQAW---------------TLEEAIRLAR-ALEDY--EWIEEPLPPDD 49 (67)
T ss_dssp HHHHHHHHH---S--TTSEEEEE---------TTBB---------------SHHHHHHHHH-HHGGG--SEEESSSSTTS
T ss_pred CHHHHHHhh---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HcChh--heeecCCCCCC
Confidence 356667776 4 589999999 5655 5778888654 47875 99999999999
Q ss_pred HHHHHHHHhhcCCeEEec
Q 016156 343 WSSWASLQSSVDIQLVGD 360 (394)
Q Consensus 343 ~~~~~~L~~~~~i~I~gd 360 (394)
++++++|++++++||++|
T Consensus 50 ~~~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 50 LDGLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHhCCCCEEeC
Confidence 999999999999999986
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=81.60 Aligned_cols=234 Identities=19% Similarity=0.262 Sum_probs=138.9
Q ss_pred HHHHHhHHhHhhhhcCCCCCCH---HHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcc
Q 016156 106 NAVKNINDILGPKLVGVDIRDQ---AEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKE 182 (394)
Q Consensus 106 ~a~~~I~~~l~p~LiG~dp~~~---e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~ 182 (394)
.....++..++|.|+|+|.... .++-+.|. ++ ..+-.....+||.||.|+++.+.+.---+.+....+..+
T Consensus 88 ~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~--d~----~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~ 161 (410)
T COG3799 88 HFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLI--DG----NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPR 161 (410)
T ss_pred hhHHHHhhhhhhhhhCccHHhhcchhHHhHhhc--cC----CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCC
Confidence 3455678999999999986432 22222221 21 134456789999999999999888776666654333333
Q ss_pred cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH
Q 016156 183 LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (394)
Q Consensus 183 ~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~ 262 (394)
..-|+|+|. .+. +.....+-+|+.++..-+.- |. +.+.-.+.++-.+..|
T Consensus 162 ~te~vP~fg-----QSG---------------d~R~~~vdkMiLK~vdVLPH------gL----iNsve~~G~dG~~l~E 211 (410)
T COG3799 162 VTESVPLFG-----QSG---------------DDRYIAVDKMILKGVDVLPH------GL----INSVEELGFDGEKLRE 211 (410)
T ss_pred ccccccccc-----cCc---------------chhhhhHHHHHHhhcCccch------hh----hhhHHHhCCchHHHHH
Confidence 334455442 111 11111112222111111110 00 0000001133344566
Q ss_pred HHHHHHHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCC--ceeeeCCCC
Q 016156 263 GLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDPFD 339 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~--i~~iEdPl~ 339 (394)
.++-+-+-+...|-.| .-.|.+|+ | |.--.. -.+++....+|.+++-++-+ ..+||-|++
T Consensus 212 yv~Wls~R~~~~g~~gYhP~lH~DV-----Y---G~iGe~---------fg~dp~r~a~yi~~l~~~a~~~pL~IEgP~D 274 (410)
T COG3799 212 YVRWLSDRILSKGTSGYHPTLHIDV-----Y---GTIGEI---------FGMDPLRCAQYIASLEKEAQGLPLYIEGPVD 274 (410)
T ss_pred HHHHHHHHHHhcCCCCCCccEEEee-----h---hhhHHH---------hCCCHHHHHHHHHHHHhhCCCCceeeecccc
Confidence 6776666666555223 57788888 2 221111 12356667777777554433 568999987
Q ss_pred ----CCCHHHHHHHHhhcC-----CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccC
Q 016156 340 ----QDDWSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 340 ----~~D~~~~~~L~~~~~-----i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit 393 (394)
+..++.++++++.+. +.|+.||. +.+..+++...+.++|+.+|||.--+|+|-
T Consensus 275 aGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDEw-Cnt~~Di~~F~dA~a~h~VQiKTPDvGsi~ 336 (410)
T COG3799 275 AGSKPAQIRLLAAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAAACHMVQIKTPDVGSIH 336 (410)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCcceEeehhh-cccHHHHHHHHhhccccEEEecCCCcchHH
Confidence 556788888887652 78999996 677999999999999999999999999873
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-05 Score=76.36 Aligned_cols=88 Identities=11% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-----------CCC-CCCCHHH
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-----------DPF-DQDDWSS 345 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-----------dPl-~~~D~~~ 345 (394)
+|+.|+++.+..++.+ + .++.++++++ .+.++++++.||| .|+ +..+.+.
T Consensus 220 ~d~~v~vri~~~~~~~--~---------------g~~~~e~~~i-a~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~ 281 (336)
T cd02932 220 EDKPLFVRISATDWVE--G---------------GWDLEDSVEL-AKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPF 281 (336)
T ss_pred CCceEEEEEcccccCC--C---------------CCCHHHHHHH-HHHHHHcCCCEEEECCCCCCcccccCCCccccHHH
Confidence 3899999996544332 2 3357788875 5558889999999 477 5567788
Q ss_pred HHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 346 ~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.++|++.+++||++.+. ++++++++++++.+.||++.+
T Consensus 282 ~~~ir~~~~iPVi~~G~-i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 282 AERIRQEAGIPVIAVGL-ITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHhhCCCCEEEeCC-CCCHHHHHHHHHcCCCCeehh
Confidence 89999999999998886 567999999999999999865
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=72.55 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=66.7
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-------CCCCC---C------
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DPFDQ---D------ 341 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-------dPl~~---~------ 341 (394)
+|+.|++++++.+++. ..++.++++++ .+.++++++.||| +|... +
T Consensus 215 ~d~~v~vris~~~~~~-----------------~g~~~eea~~i-a~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~ 276 (338)
T cd04733 215 PGFPVGIKLNSADFQR-----------------GGFTEEDALEV-VEALEEAGVDLVELSGGTYESPAMAGAKKESTIAR 276 (338)
T ss_pred CCCeEEEEEcHHHcCC-----------------CCCCHHHHHHH-HHHHHHcCCCEEEecCCCCCCccccccccCCcccc
Confidence 3899999996544332 13467888875 5558999999999 55532 1
Q ss_pred ---CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 342 ---DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 342 ---D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
..+..++|++++++||++.+. ++++++++++++.+.||++.+
T Consensus 277 ~~~~~~~~~~ik~~v~iPVi~~G~-i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 277 EAYFLEFAEKIRKVTKTPLMVTGG-FRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred chhhHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 135557899999999998886 567999999999999999875
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00049 Score=63.43 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=78.9
Q ss_pred CChHHHHHHHHHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc-CC-ceee
Q 016156 258 QDNREGLVLLTDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD-FP-IVSI 334 (394)
Q Consensus 258 ~~~~~~l~~v~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~-~~-i~~i 334 (394)
+...+.++-|++-+.+.|..+ .-.|.+|+. |.--..|. -+.+.+.+|+.++-+. .| -..|
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVY--------GtiG~~f~---------~d~~~~adYl~~l~~aA~P~~L~i 109 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVY--------GTIGLAFD---------NDPDRMADYLAELEEAAAPFKLRI 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-T--------THHHHHTT---------T-HHHHHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEcc--------chHHHHhC---------CCHHHHHHHHHHHHHhcCCCeeee
Confidence 456677888888888887544 578889993 22111121 1578888888775443 44 4579
Q ss_pred eCCCCCCC----HHHHHHHHhhcC-----CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccC
Q 016156 335 EDPFDQDD----WSSWASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 335 EdPl~~~D----~~~~~~L~~~~~-----i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit 393 (394)
|.|++..+ ++.+++|++.+. +.|++||. +.+.++++...+.+|+|.+|||.--.|||.
T Consensus 110 EgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEW-CNT~eDI~~F~da~A~dmVQIKtPDLGgi~ 176 (248)
T PF07476_consen 110 EGPMDAGSREAQIEALAELREELDRRGINVEIVADEW-CNTLEDIREFADAKAADMVQIKTPDLGGIN 176 (248)
T ss_dssp E-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT---SHHHHHHHHHTT-SSEEEE-GGGGSSTH
T ss_pred eCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehh-cCCHHHHHHHHhcCCcCEEEecCCCccchh
Confidence 99998665 577888888763 78999995 778999999999999999999999999873
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.003 Score=62.37 Aligned_cols=88 Identities=13% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee-------CCCC---------CC
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE-------DPFD---------QD 341 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE-------dPl~---------~~ 341 (394)
.|+.|+++.+..+..+ + .++.++++++ .+.++++++.||+ +|.. ..
T Consensus 207 ~d~~i~vris~~~~~~--~---------------g~~~~e~~~l-a~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~ 268 (327)
T cd02803 207 PDFPVGVRLSADDFVP--G---------------GLTLEEAIEI-AKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGY 268 (327)
T ss_pred CCceEEEEechhccCC--C---------------CCCHHHHHHH-HHHHHHcCCCEEEeCCCCCcccccccCCCCCCcch
Confidence 3899999996443221 1 2467788875 5558899999994 6544 55
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++..+++++.+++||++... ++++++++++++.+.+|.+.+
T Consensus 269 ~~~~~~~ir~~~~iPVi~~Gg-i~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 269 FLELAEKIKKAVKIPVIAVGG-IRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred hHHHHHHHHHHCCCCEEEeCC-CCCHHHHHHHHHCCCCCeeee
Confidence 677888999999999988776 467999999999999999875
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=66.64 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHHhhhcCCc-------eeeeCCCCCC--------CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 313 LSAQSLGDLYKEFVRDFPI-------VSIEDPFDQD--------DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i-------~~iEdPl~~~--------D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
++.++++++ .+.++++++ .|.|+|.+.. ..+..+++++.+++||++.+. ++++++++++++.+
T Consensus 221 ~~~~e~~~i-~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~-i~~~~~a~~~i~~g 298 (353)
T cd02930 221 STWEEVVAL-AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNR-INTPEVAERLLADG 298 (353)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCC-CCCHHHHHHHHHCC
Confidence 467788875 556888884 4567777543 245568899999999998886 46799999999999
Q ss_pred CCcEEee
Q 016156 378 SCNGLLL 384 (394)
Q Consensus 378 a~d~i~i 384 (394)
.+|++.+
T Consensus 299 ~~D~V~~ 305 (353)
T cd02930 299 DADMVSM 305 (353)
T ss_pred CCChhHh
Confidence 9999865
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0046 Score=57.39 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=121.3
Q ss_pred CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 60 NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 60 ~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
+..+.|++.+++. .||||...++ .|..++.+.|-......+...+.|-++.+. .|
T Consensus 27 RdGl~V~l~~~~r----------~gwGEIaPLP-----gFSqETleqAq~~a~~wl~~W~~g~~~~d~-----~~----- 81 (321)
T COG1441 27 RDGLYVCLREGER----------EGWGEIAPLP-----GFSQETLEQAQEQALAWLNNWLAGHDPLDP-----QM----- 81 (321)
T ss_pred cccEEEEEeeCCc----------ccccccCCCC-----CcCHHHHHHHHHHHHHHHHHHHccCCcccc-----cC-----
Confidence 3457888887633 3999975543 467777776665555566666667644331 01
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
-+...++|.|+..+.+-. | .. |+++ .-|. ++ | +..|. +.
T Consensus 82 --------PSVAFGlScA~aEl~~~L---p----~~---~nY~-~APL--C~----G-------DPDeL---------~~ 120 (321)
T COG1441 82 --------PSVAFGLSCALAELKGTL---P----EA---ANYR-VAPL--CT----G-------DPDEL---------YL 120 (321)
T ss_pred --------chhHHHHHHHHHHHhhhc---h----hh---cCcc-cccC--cC----C-------CHHHH---------HH
Confidence 146778899998877632 1 11 3443 2332 21 2 11221 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
.-..+ .|-+.-| +|.| -|....| -..++++-||+ +|.+|++|+ |-.|+
T Consensus 121 ~L~~m--pGeKvAK----vKVG----------lYEa~RD--GmivnllLEai------PDL~LRLDA--------NRaWt 168 (321)
T COG1441 121 KLADM--PGEKVAK----VKVG----------LYEAVRD--GMIVNLLLEAI------PDLHLRLDA--------NRAWT 168 (321)
T ss_pred HHhcC--Ccceeee----eeee----------eeecccc--chHHHHHHHhC------ccceeeecc--------cccCC
Confidence 10000 0111111 3433 2333322 33567777887 899999999 55554
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhc-C--CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRD-F--PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~-~--~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
. .-+.+ |++.++. | .|.|+|||..-- ..-+.+...++|.|+-||.. ..+ +|. .-..
T Consensus 169 p---------------~Ka~~-FAkyV~p~~R~RIaFLEEPCkt~--aeSr~Fa~eTgIAIAWDEs~-rea-dF~-~e~e 227 (321)
T COG1441 169 P---------------LKAQQ-FAKYVNPDYRSRIAFLEEPCKTR--AESRAFARETGIAIAWDESL-REA-DFA-FEAE 227 (321)
T ss_pred h---------------HHHHH-HHHhcCHHHHHHHHHHhcccCCh--HHHHHHHHhcCeeEeecchh-ccc-ccc-cccC
Confidence 3 33333 2333442 3 399999998632 33456677889999999963 322 232 2346
Q ss_pred CCCcEEeecccccccc
Q 016156 377 KSCNGLLLKVNHLFEI 392 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggi 392 (394)
..+..+.||+.-+|.+
T Consensus 228 ~gv~avVIKPTL~GSl 243 (321)
T COG1441 228 PGVRAVVIKPTLTGSL 243 (321)
T ss_pred CCceEEEecccchhhH
Confidence 6789999999999876
|
|
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.01 Score=51.81 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=62.1
Q ss_pred ceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 61 PTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 61 ~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
.+|-|.+.++ |.+ .+-|......|.|-- | |.|. .+.-+..|++.++|.|+|+|..+..+.-..+..+
T Consensus 51 esisV~l~L~dG~va~GDCaaVQYSGagGR----D---PLF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~- 119 (159)
T PF05034_consen 51 ESISVMLVLEDGQVAYGDCAAVQYSGAGGR----D---PLFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDEL- 119 (159)
T ss_dssp EEEEEEEEETTS-EEEEEE---TTTTSTTS--------S------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH--
T ss_pred cEEEEEEEeCCCCEEEeeehheeecccCCC----C---Cccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhc-
Confidence 3688999999 865 333333333344421 1 2233 3445667889999999999999988888888765
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
.++.++-.....+||.||.|+.|++.+.---+.|.
T Consensus 120 --~~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~ 154 (159)
T PF05034_consen 120 --VDGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIA 154 (159)
T ss_dssp --ETTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHH
T ss_pred --ccCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHH
Confidence 22234556778999999999999998765544443
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.034 Score=51.77 Aligned_cols=66 Identities=14% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhcCCceee-------eC-CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 317 SLGDLYKEFVRDFPIVSI-------ED-PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 317 e~i~~~~~~l~~~~i~~i-------Ed-Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++++ .+.++++++.+| ++ +..+-+++..+++++..++||+++.. +.+++++.++++.+.+|.+++
T Consensus 139 ~~~~~-~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Gg-i~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 139 ETLEL-AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGD-IFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCC-CCCHHHHHHHHHhcCCCEEEE
Confidence 55553 445788899888 66 77778999999999999999998875 578999999999888999876
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.1 Score=44.70 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHhhhcCC-ceeeeC-------C---------CC-C--CCHHHHHHHHhhcCCeEEecCccccCHHHHHH
Q 016156 313 LSAQSLGDLYKEFVRDFP-IVSIED-------P---------FD-Q--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAE 372 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~-i~~iEd-------P---------l~-~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~ 372 (394)
.+.+|.+++ .+++++.+ +.||+= + .. + .+++.-+++++.+++||++--. +++++++.+
T Consensus 225 ~~~~e~~~~-~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i~~~~~~~~ 302 (343)
T cd04734 225 LSPDEALEI-AARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGR-IRDPAEAEQ 302 (343)
T ss_pred CCHHHHHHH-HHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCC-CCCHHHHHH
Confidence 367888875 55688887 677751 1 11 1 1245557788888888764432 357999999
Q ss_pred HHhcCCCcEEee
Q 016156 373 AIQKKSCNGLLL 384 (394)
Q Consensus 373 ~i~~~a~d~i~i 384 (394)
+++.+.||.+.+
T Consensus 303 ~l~~~~~D~V~~ 314 (343)
T cd04734 303 ALAAGHADMVGM 314 (343)
T ss_pred HHHcCCCCeeee
Confidence 999999999865
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=89.63 E-value=6.2 Score=39.78 Aligned_cols=71 Identities=10% Similarity=0.122 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHhhhcCCceeee-------CC-CCCCCHHHHHHHHhhcCCeEEecCcc-----------------ccCH
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE-------DP-FDQDDWSSWASLQSSVDIQLVGDDLL-----------------VTNP 367 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE-------dP-l~~~D~~~~~~L~~~~~i~I~gde~~-----------------~~~~ 367 (394)
.+.++++++ .+++++.++.+|+ +| +...+..--+++++.+++||++--.. .+++
T Consensus 232 ~~~~e~~~~-~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~ 310 (361)
T cd04747 232 DTPDELEAL-LAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASL 310 (361)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCH
Confidence 467888875 4557777766553 23 22223333355777778776543221 2579
Q ss_pred HHHHHHHhcCCCcEEee
Q 016156 368 KRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 368 ~~~~~~i~~~a~d~i~i 384 (394)
++..+.++.+.||.+.+
T Consensus 311 ~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 311 DRLLERLERGEFDLVAV 327 (361)
T ss_pred HHHHHHHHCCCCCeehh
Confidence 99999999999999754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=87.24 E-value=4 Score=40.87 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHhhhcCCceeee-------CCC---CCCCHHHHHHHHhhc--CCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE-------DPF---DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE-------dPl---~~~D~~~~~~L~~~~--~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
.+.++.+++ .+++++.++.||+ .+. .....+.++.+++.+ ++||++--. +++++++.++++.+ ||
T Consensus 232 ~~~ee~~~i-~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g-aD 308 (353)
T cd04735 232 IRMEDTLAL-VDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG-AD 308 (353)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-CC
Confidence 356788775 5568888888776 111 122355567777776 577664332 45799999999985 88
Q ss_pred EEe
Q 016156 381 GLL 383 (394)
Q Consensus 381 ~i~ 383 (394)
.+.
T Consensus 309 ~V~ 311 (353)
T cd04735 309 LVA 311 (353)
T ss_pred hHH
Confidence 754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=9 Score=38.58 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=44.6
Q ss_pred cCHHH-HHHHHHHhhhcCCceeeeCCCC------CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQS-LGDLYKEFVRDFPIVSIEDPFD------QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e-~i~~~~~~l~~~~i~~iEdPl~------~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+.+| ++++ .+++++.++.+|+=-.. +-...--+++++.+++||++.-.. +++..++.|+.+.||.+-+
T Consensus 245 ~~~~e~~~~~-~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~--~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 245 PNEEADALYL-IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAY--TAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CCHHHHHHHH-HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCC--CHHHHHHHHHcCCCCEEEE
Confidence 35667 6764 55577777666642111 001222367788888877654433 5999999999999999864
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=5.9 Score=39.50 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeC--------C---CCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcE
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIED--------P---FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEd--------P---l~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~ 381 (394)
.+.+|++++ .+.+++.++.||+= + .+..+++--+++++.+++||++--. +++++.++++|+.+.+|.
T Consensus 224 ~~~~e~~~i-~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~-i~~~~~a~~~l~~g~~D~ 301 (337)
T PRK13523 224 LTVQDYVQY-AKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGL-ITSGAQAEEILQNNRADL 301 (337)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCC-CCCHHHHHHHHHcCCCCh
Confidence 357788875 55577777766631 1 1122445557788888888764333 357999999999999998
Q ss_pred Eee
Q 016156 382 LLL 384 (394)
Q Consensus 382 i~i 384 (394)
+.+
T Consensus 302 V~~ 304 (337)
T PRK13523 302 IFI 304 (337)
T ss_pred HHh
Confidence 754
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=84.63 E-value=8.6 Score=38.32 Aligned_cols=68 Identities=7% Similarity=0.046 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhhcCCceeeeC--CC-----CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIED--PF-----DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEd--Pl-----~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++++++ .+++++.++.+|+= .. ....++--+++++.+++||++--.. + +..+++.++.+.||.+.+
T Consensus 239 ~~ee~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i-~-~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 239 PEATFSYL-AKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY-D-AESAEAALADGKADLVAF 313 (338)
T ss_pred CHHHHHHH-HHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC-C-HHHHHHHHHcCCCCEEEe
Confidence 56788874 55677777665552 21 2345566678888899887654433 4 999999999999999865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.84 E-value=9.3 Score=38.56 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
--+++++.+++||++--. ++++....++++.+.+|.+.+
T Consensus 280 ~~~~ik~~~~~pvi~~G~-i~~~~~~~~~l~~g~~D~V~~ 318 (370)
T cd02929 280 YIKFVKQVTSKPVVGVGR-FTSPDKMVEVVKSGILDLIGA 318 (370)
T ss_pred HHHHHHHHCCCCEEEeCC-CCCHHHHHHHHHcCCCCeeee
Confidence 335678888888764332 357999999999999999865
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=81.89 E-value=59 Score=36.12 Aligned_cols=70 Identities=6% Similarity=-0.014 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeC--------CCC--C--CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIED--------PFD--Q--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEd--------Pl~--~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
++.++++++ .+.+++.++.+|+= +.+ . -..+--+++++.+++||++--. ++++..+++.++.+.||
T Consensus 635 ~~~~~~~~~-~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 635 NTPDDAVEI-ARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGA-ISEADHVNSIIAAGRAD 712 (765)
T ss_pred CCHHHHHHH-HHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCC-CCCHHHHHHHHHcCCcc
Confidence 467788874 55688887666641 110 0 1123336778888888764433 35799999999999999
Q ss_pred EEee
Q 016156 381 GLLL 384 (394)
Q Consensus 381 ~i~i 384 (394)
.+.+
T Consensus 713 ~v~~ 716 (765)
T PRK08255 713 LCAL 716 (765)
T ss_pred eeeE
Confidence 9876
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=22 Score=35.04 Aligned_cols=66 Identities=9% Similarity=0.300 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhcCCceee-------eCCCCC--CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 317 SLGDLYKEFVRDFPIVSI-------EDPFDQ--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 317 e~i~~~~~~l~~~~i~~i-------EdPl~~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++ +.+++++.++.+| ++.... -|++..+++++.+++||+|.-- +.+++++.+.++...||.+++
T Consensus 149 ~~~~-~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGd-I~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 149 RKFE-IADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGE-IWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred HHHH-HHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCC-cCCHHHHHHHHhccCCCEEEE
Confidence 3444 4555777775544 232221 2788889999999999875543 567999999999999999987
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=19 Score=35.66 Aligned_cols=66 Identities=14% Similarity=0.347 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhcCCceee-------eCCCC-CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 317 SLGDLYKEFVRDFPIVSI-------EDPFD-QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 317 e~i~~~~~~l~~~~i~~i-------EdPl~-~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++ +.+.+++.++.+| ++... +-|++..+++++++++||+|.=- ++++++++++++...||++++
T Consensus 150 ~~~~-~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg-I~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 150 NCVE-IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD-ITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hHHH-HHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC-CCCHHHHHHHHhccCCCEEEE
Confidence 3444 3445777887766 23322 35788889999999999764432 468999999998888999887
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 394 | ||||
| 2xsx_A | 435 | Crystal Structure Of Human Beta Enolase Enob Length | 1e-135 | ||
| 2psn_A | 434 | Crystal Structure Of Enolase1 Length = 434 | 1e-133 | ||
| 3b97_A | 433 | Crystal Structure Of Human Enolase 1 Length = 433 | 1e-133 | ||
| 3ucc_A | 439 | Asymmetric Complex Of Human Neuron Specific Enolase | 1e-132 | ||
| 1te6_A | 439 | Crystal Structure Of Human Neuron Specific Enolase | 1e-132 | ||
| 3uje_A | 443 | Asymmetric Complex Of Human Neuron Specific Enolase | 1e-132 | ||
| 1pdz_A | 434 | X-Ray Structure And Catalytic Mechanism Of Lobster | 1e-132 | ||
| 3qtp_A | 441 | Crystal Structure Analysis Of Entamoeba Histolytica | 1e-117 | ||
| 1ebg_A | 436 | Chelation Of Ser 39 To Mg2+ Latches A Gate At The A | 1e-113 | ||
| 1oep_A | 432 | Structure Of Trypanosoma Brucei Enolase Reveals The | 1e-113 | ||
| 2al2_B | 436 | Crystal Structure Analysis Of Enolase Mg Subunit Co | 1e-113 | ||
| 1l8p_A | 436 | Mg-phosphonoacetohydroxamate Complex Of S39a Yeast | 1e-113 | ||
| 1els_A | 436 | Catalytic Metal Ion Binding In Enolase: The Crystal | 1e-113 | ||
| 1p48_A | 436 | Reverse Protonation Is The Key To General Acid-Base | 1e-113 | ||
| 1p43_A | 436 | Reverse Protonation Is The Key To General Acid-Base | 1e-113 | ||
| 2ptw_A | 432 | Crystal Structure Of The T. Brucei Enolase Complexe | 1e-113 | ||
| 2al2_A | 436 | Crystal Structure Analysis Of Enolase Mg Subunit Co | 1e-113 | ||
| 2xh7_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-113 | ||
| 2xh4_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-112 | ||
| 2xgz_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-112 | ||
| 2xh2_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-112 | ||
| 2xh0_A | 443 | Engineering The Enolase Active Site Pocket: Crystal | 1e-112 | ||
| 4g7f_A | 429 | Crystal Structure Of Enolase From Trypanosoma Cruzi | 1e-111 | ||
| 3otr_A | 452 | 2.75 Angstrom Crystal Structure Of Enolase 1 From T | 1e-107 | ||
| 2pa6_A | 427 | Crystal Structure Of Mj0232 From Methanococcus Jann | 1e-100 | ||
| 1iyx_A | 432 | Crystal Structure Of Enolase From Enterococcus Hira | 6e-91 | ||
| 4a3r_A | 430 | Crystal Structure Of Enolase From Bacillus Subtilis | 4e-88 | ||
| 1w6t_A | 444 | Crystal Structure Of Octameric Enolase From Strepto | 7e-86 | ||
| 3h8a_A | 432 | Crystal Structure Of E. Coli Enolase Bound To Its C | 2e-84 | ||
| 1e9i_A | 431 | Enolase From E.Coli Length = 431 | 2e-84 | ||
| 4ewj_A | 443 | Structure Of The Enloase From Streptococcus Suis Se | 5e-84 | ||
| 3qn3_A | 417 | Phosphopyruvate Hydratase From Campylobacter Jejuni | 6e-74 | ||
| 3uj2_A | 449 | Crystal Structure Of An Enolase From Anaerostipes C | 1e-73 | ||
| 3tqp_A | 428 | Structure Of An Enolase (Eno) From Coxiella Burneti | 3e-72 |
| >pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob Length = 435 | Back alignment and structure |
|
| >pdb|2PSN|A Chain A, Crystal Structure Of Enolase1 Length = 434 | Back alignment and structure |
|
| >pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1 Length = 433 | Back alignment and structure |
|
| >pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific Enolase-1-PgaPEP Length = 439 | Back alignment and structure |
|
| >pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8 Angstrom Length = 439 | Back alignment and structure |
|
| >pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific Enolase-3-PgaPEP Length = 443 | Back alignment and structure |
|
| >pdb|1PDZ|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase Length = 434 | Back alignment and structure |
|
| >pdb|3QTP|A Chain A, Crystal Structure Analysis Of Entamoeba Histolytica Enolase Length = 441 | Back alignment and structure |
|
| >pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of Yeast Enolase And The Intermediate Analog Phosphonoacetohydroxamate At 2.1 Angstroms Resolution Length = 436 | Back alignment and structure |
|
| >pdb|1OEP|A Chain A, Structure Of Trypanosoma Brucei Enolase Reveals The Inhibitory Divalent Metal Site Length = 432 | Back alignment and structure |
|
| >pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0 Length = 436 | Back alignment and structure |
|
| >pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase 1 Length = 436 | Back alignment and structure |
|
| >pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate Complex At 2.4 Angstroms Resolution Length = 436 | Back alignment and structure |
|
| >pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base Catalysis In Enolase Length = 436 | Back alignment and structure |
|
| >pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base Catalysis In Enolase Length = 436 | Back alignment and structure |
|
| >pdb|2PTW|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With Sulphate, Identification Of A Metal Binding Site Iv Length = 432 | Back alignment and structure |
|
| >pdb|2AL2|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0 Length = 436 | Back alignment and structure |
|
| >pdb|2XH7|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH4|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39a D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XGZ|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n D321r Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH2|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n D321a Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|2XH0|A Chain A, Engineering The Enolase Active Site Pocket: Crystal Structure Of The S39n Q167k D321r Mutant Of Yeast Enolase 1 Length = 443 | Back alignment and structure |
|
| >pdb|4G7F|A Chain A, Crystal Structure Of Enolase From Trypanosoma Cruzi Length = 429 | Back alignment and structure |
|
| >pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From Toxoplasma Gondii Length = 452 | Back alignment and structure |
|
| >pdb|2PA6|A Chain A, Crystal Structure Of Mj0232 From Methanococcus Jannaschii Length = 427 | Back alignment and structure |
|
| >pdb|1IYX|A Chain A, Crystal Structure Of Enolase From Enterococcus Hirae Length = 432 | Back alignment and structure |
|
| >pdb|4A3R|A Chain A, Crystal Structure Of Enolase From Bacillus Subtilis. Length = 430 | Back alignment and structure |
|
| >pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus Pneumoniae Length = 444 | Back alignment and structure |
|
| >pdb|3H8A|A Chain A, Crystal Structure Of E. Coli Enolase Bound To Its Cognate Rnase E Recognition Domain Length = 432 | Back alignment and structure |
|
| >pdb|1E9I|A Chain A, Enolase From E.Coli Length = 431 | Back alignment and structure |
|
| >pdb|4EWJ|A Chain A, Structure Of The Enloase From Streptococcus Suis Serotype 2 Length = 443 | Back alignment and structure |
|
| >pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni. Length = 417 | Back alignment and structure |
|
| >pdb|3UJ2|A Chain A, Crystal Structure Of An Enolase From Anaerostipes Caccae (Efi Target Efi-502054) With Bound Mg And Sulfate Length = 449 | Back alignment and structure |
|
| >pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii Length = 428 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 394 | |||
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 0.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 0.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 0.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 0.0 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 0.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 0.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 1e-179 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 1e-178 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 1e-176 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 1e-175 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 1e-175 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 7e-11 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 3e-08 |
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A Length = 439 | Back alignment and structure |
|---|
Score = 641 bits (1656), Expect = 0.0
Identities = 226/345 (65%), Positives = 284/345 (82%), Gaps = 5/345 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T LFR+AVPSGASTGIYEALELRDGDK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV +IN + P L+ G+ + +Q ++D +MLE+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAL 222
A + +PLY+HI +L+G +L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181
Query: 223 RMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282
R+G+EVYH LKG+IK+KYG+DA NVGDEGGFAPN+ +N E L L+ +AI+KAGYT KI I
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 241
Query: 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
GMDVAASEF+ +DG YDL+FK P D + ++ LG LY++FVRD+P+VSIEDPFDQDD
Sbjct: 242 GMDVAASEFY-RDGKYDLDFKS-PTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDD 299
Query: 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
W++W+ ++V IQ+VGDDL VTNPKRI A+++K+CN LLLKVN
Sbjct: 300 WAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVN 344
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... Length = 436 | Back alignment and structure |
|---|
Score = 637 bits (1645), Expect = 0.0
Identities = 206/347 (59%), Positives = 259/347 (74%), Gaps = 6/347 (1%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
V V AR + DSRGNPTVEV+L T+ +FRS VPSGASTG++EALE+RDGDKS + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L+AVKN+ND++ P V +D++DQ VD ++ +DGT NKSK+GANAILGVSL+ RA
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 163 AGAKGVPLYKHIQELSGTK--ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A K VPLYKH+ +LS +K V+PVP NV+NGGSHAG LA+QEFMI P GA +FAE
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAE 181
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALR+GSEVYH LK + K++YG A NVGDEGG APN+Q E L L+ DAI+ AG+ GK+
Sbjct: 182 ALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKV 241
Query: 281 NIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340
IG+D A+SEFF KDG YDL+FK +D + L+ L DLY ++ +PIVSIEDPF +
Sbjct: 242 KIGLDCASSEFF-KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAE 300
Query: 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DDW +W+ + IQ+V DDL VTNPKRIA AI+KK+ + LLLKVN
Sbjct: 301 DDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} Length = 441 | Back alignment and structure |
|---|
Score = 634 bits (1637), Expect = 0.0
Identities = 206/351 (58%), Positives = 260/351 (74%), Gaps = 5/351 (1%)
Query: 42 SSAKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYG 100
S ++ V AR+I+DSRGNPT+EV++ T +FRS VPSGASTG++EA+ELRDGDK YG
Sbjct: 4 GSMSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYG 63
Query: 101 GKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCR 160
GKGVL AV+N+N I+GP L+G ++ +QAE+D +M+++DGT NK K+GANAILG S+S+CR
Sbjct: 64 GKGVLKAVENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICR 123
Query: 161 AGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A A KG+PLYK++ EL+G KE+ MPVP FNVINGG+HAGN LAMQEFMI P GAT+F E
Sbjct: 124 AAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHE 183
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKI 280
ALRM +E Y LK +IK KYGQDA NVGDEGGFAPNV RE L LL +AI KAGYTGKI
Sbjct: 184 ALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKI 243
Query: 281 NIGMDVAASEFFTKD-GNYDLNFK--KQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP 337
I MD AASEF+ ++ YDL K D + V L Y ++ + +PI SIEDP
Sbjct: 244 EIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDP 303
Query: 338 FDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
F +DDW++W + Q+VGDDLLVTNP R+ A+ K +CN +L+KVN
Sbjct: 304 FAEDDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVN 354
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A Length = 432 | Back alignment and structure |
|---|
Score = 623 bits (1610), Expect = 0.0
Identities = 204/347 (58%), Positives = 264/347 (76%), Gaps = 7/347 (2%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103
++ V R+++DSRGNPTVEV++ T+ +FRSAVPSGASTG+YEA ELRDGDK Y GKG
Sbjct: 5 TIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKG 64
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
L AVKN+N+++GP L+G D Q E+D +ML +DGTPNK K+GANAILG S+++ +A A
Sbjct: 65 CLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAA 124
Query: 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALR 223
AKGVPLY+++ L+GTKEL +PVP FNVINGG HAGN L QEFMI PV ATSF+EALR
Sbjct: 125 AAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALR 184
Query: 224 MGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIG 283
MGSEVYH L+GIIK+KYGQDA NVGDEGGFAP ++D E L +L +AIE+AG+ GK I
Sbjct: 185 MGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAIC 244
Query: 284 MDVAASEFFTKD-GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342
MD AASE + + Y+L FK + ++A+ L + Y ++ D+PIVSIEDP+DQDD
Sbjct: 245 MDCAASETYDEKKQQYNLTFK---SPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDD 301
Query: 343 WSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++ +A + ++ Q+VGDDL VTN +RI AI+KK+CN LLLK+N
Sbjct: 302 FAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKIN 348
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} Length = 452 | Back alignment and structure |
|---|
Score = 620 bits (1601), Expect = 0.0
Identities = 198/356 (55%), Positives = 262/356 (73%), Gaps = 12/356 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGK 102
+K + AR+I+DSRGNPT+EVD+ T+ +FR+AVPSGASTGIYEALELRD D Y GK
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 103 GVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGTPN-----KSKIGANAILGVSL 156
GVLNAV+ + + P L+G D DQ +D +M+E +DGT N KSK+GANAILGVS+
Sbjct: 62 GVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSI 121
Query: 157 SVCRAGAGAKGVPLYKHIQELSG--TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVG 214
+ CRAGA +KG+PLYK+I L+G ++VMPVP FNVINGG HAGN LA+QEF+I PVG
Sbjct: 122 ACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPVG 181
Query: 215 ATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKA 274
A + EA+R GSE YH LK +IK KYG DA NVGDEGGFAPNV E L LL +AI+ A
Sbjct: 182 APNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAA 241
Query: 275 GYTGKINIGMDVAASEFFTK-DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVS 333
GY GKI I D AASEF+ + + YDL++K + + + L+ + L ++Y+ +++ +PI+S
Sbjct: 242 GYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIIS 301
Query: 334 IEDPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
+EDPFDQDD++S+++ V Q++GDD+LVTN RI +A++ K+CN LLLKVN
Sbjct: 302 VEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVN 357
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} Length = 427 | Back alignment and structure |
|---|
Score = 585 bits (1511), Expect = 0.0
Identities = 193/349 (55%), Positives = 256/349 (73%), Gaps = 15/349 (4%)
Query: 41 SSSAKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSV 98
++K + AR++IDSRGNPTVEV++IT + VPSGASTG +EALELRD +K
Sbjct: 6 DERFEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKR- 64
Query: 99 YGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSV 158
+GGKGVL AV+N+N I+ P+++G D R Q E+D IM+E+DGTPNKS++GANAIL VSL+V
Sbjct: 65 FGGKGVLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAV 124
Query: 159 CRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218
+A A +PLYK+ L G VMPVP NVINGG HAGN+L +QEFMI+PVGATS
Sbjct: 125 AKAAAATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSI 181
Query: 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG 278
+EA+RMGSEVYH+LK +I EKYG++A NVGDEGGFAP ++ +RE L LLT++++KAGY
Sbjct: 182 SEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYED 241
Query: 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338
++ +D AASEF+ KDG Y + KK L+ + L D YK V ++PIVSIEDPF
Sbjct: 242 EVVFALDAAASEFY-KDGYYYVEGKK--------LTREELLDYYKALVDEYPIVSIEDPF 292
Query: 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++D+ +A + +DIQ+VGDDL VTN +R+ + I+ K+ N LLLKVN
Sbjct: 293 HEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLLKVN 341
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A Length = 444 | Back alignment and structure |
|---|
Score = 505 bits (1304), Expect = e-179
Identities = 164/350 (46%), Positives = 226/350 (64%), Gaps = 12/350 (3%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+ + V AR+++DSRGNPT+EV++ T+ R VPSGASTG +EA+ELRDGDKS YGG
Sbjct: 12 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 71
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
G AV N+N+I+ ++G D+RDQ +D M+ +DGTPNK K+GANAILGVS++V RA
Sbjct: 72 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 131
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A +PLY + L G V+P P N+INGGSH+ +A QEFMILPVGA +F EA
Sbjct: 132 AADYLEIPLYSY---LGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEA 188
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LR G+E++H LK I+K + VGDEGGFAP + +G+ + AIE AGY GK
Sbjct: 189 LRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKD 246
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
+ +G D A+SEF+ ++ K +GA V ++ D +E V +PI++IED D
Sbjct: 247 VFLGFDCASSEFY-DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMD 305
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++DW W +L + +QLVGDD VTN +A IQ+ + N +L+KVN
Sbjct: 306 ENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 355
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A Length = 431 | Back alignment and structure |
|---|
Score = 502 bits (1296), Expect = e-178
Identities = 176/351 (50%), Positives = 230/351 (65%), Gaps = 15/351 (4%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+K+ + R+IIDSRGNPTVE ++ + + +A PSGASTG EALELRDGDKS + G
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGV AV +N + L+G D +DQA +D IM+++DGT NKSK GANAIL VSL+ +A
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 162 GAGAKGVPLYKHIQELSGTKE-LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220
A AKG+PLY+HI EL+GT MPVP N+INGG HA NN+ +QEFMI PVGA + E
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKE 180
Query: 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK 279
A+RMGSEV+H L ++K K G VGDEGG+APN+ N E L ++ +A++ AGY GK
Sbjct: 181 AIRMGSEVFHHLAKVLKAK-GM-NTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK 238
Query: 280 -INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338
I + MD AASEF+ KDG Y L +G +++ +E + +PIVSIED
Sbjct: 239 DITLAMDCAASEFY-KDGKYVL-----AGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGL 292
Query: 339 DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
D+ DW +A + IQLVGDDL VTN K + E I+K N +L+K N
Sbjct: 293 DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFN 343
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} Length = 449 | Back alignment and structure |
|---|
Score = 498 bits (1284), Expect = e-176
Identities = 160/362 (44%), Positives = 226/362 (62%), Gaps = 18/362 (4%)
Query: 33 QCSVASTASSSAKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALE 90
++ + + +++ V R+IIDSRGNPTVE ++ R PSGASTG +EALE
Sbjct: 15 TENLYFQSMNYLEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALE 74
Query: 91 LRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANA 150
LRDGDK +GGKGV AV+NIN + L G+D D VD M++ DGT +KSK GANA
Sbjct: 75 LRDGDKGRFGGKGVTKAVQNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANA 134
Query: 151 ILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210
+L VS++ +A A A GVPLY+ L G +PVP N++NGG+HA N + +QEFMI
Sbjct: 135 VLAVSIACAKAAAAALGVPLYRF---LGGLNANRLPVPMMNILNGGAHAANTVDVQEFMI 191
Query: 211 LPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270
+PVGA SF EALR +EV+H L G++K K G A +VGDEGGFAP++ + E + + +A
Sbjct: 192 MPVGAESFREALRQCTEVFHALAGLLKSK-GL-ATSVGDEGGFAPDLASDEEAIEYILEA 249
Query: 271 IEKAGYT-GK-INIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327
++ AGY G+ + MD A+SE+ K G Y L K+ +++ L +K
Sbjct: 250 VKLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKR------KFASEELVAHWKSLCE 303
Query: 328 DFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLK 385
+PIVSIED D++DW W + + IQLVGDDL VTN +R+ + I+++ N +L+K
Sbjct: 304 RYPIVSIEDGLDEEDWEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIK 363
Query: 386 VN 387
+N
Sbjct: 364 LN 365
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} Length = 428 | Back alignment and structure |
|---|
Score = 495 bits (1277), Expect = e-175
Identities = 160/350 (45%), Positives = 223/350 (63%), Gaps = 19/350 (5%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
A + + A +I+DSR NPT+EV + +AVPSGASTG EA+ELRD D YGG
Sbjct: 3 ATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGG 62
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV+N+N + L+G D R Q E+D IM+E+DGT NK+ +GANAILGVSL+V A
Sbjct: 63 KGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A +PLY+++ G MPVP N+INGG+HA NNL QEFMI+PVGA +FAEA
Sbjct: 123 AANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEA 180
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-GK- 279
LR G+EV+H LK + + G VGDEGGFAP++ +N L+ +AIE A Y GK
Sbjct: 181 LRYGAEVFHALKKRLVSR-GL-MSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238
Query: 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339
I + +D A+SE + ++G YD + L+++ + D E+ + +P++SIED
Sbjct: 239 IYLALDAASSELY-QNGRYDFENNQ--------LTSEEMIDRLTEWTKKYPVISIEDGLS 289
Query: 340 QDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
++DW+ W L + +QLVGDD+ VTNP + + I+K N +L+K+N
Sbjct: 290 ENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLN 339
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 493 bits (1272), Expect = e-175
Identities = 158/348 (45%), Positives = 221/348 (63%), Gaps = 19/348 (5%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
++ V+A +++DSRGNPTV+ ++ D + + VPSGASTG EALELRD D+ +GG
Sbjct: 5 LVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDER-FGG 63
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGVL AV N+N+ + +++G+D +Q ++D + E+DGT N S +GANA LGVS++ RA
Sbjct: 64 KGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARA 123
Query: 162 GAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEA 221
A A G+PLY++ L G ++PVP N+INGG+HA NN+ QEFMI+P G TSF EA
Sbjct: 124 AAAALGMPLYRY---LGGANASILPVPMCNIINGGAHANNNVDFQEFMIMPFGFTSFKEA 180
Query: 222 LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281
LR E+Y ILK + + +GDEGGFAPN+ +N E + LL I+KAGY ++
Sbjct: 181 LRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRVK 238
Query: 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341
I +DVA++EFF KDG Y + K S+++L + Y E +PI SIED ++
Sbjct: 239 IALDVASTEFF-KDGKYHMEGKA--------FSSEALIERYVELCAKYPICSIEDGLAEN 289
Query: 342 DWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
D+ W L + IQLVGDDL VTN + E I KK N +L+K N
Sbjct: 290 DFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN 337
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 7e-11
Identities = 59/342 (17%), Positives = 110/342 (32%), Gaps = 72/342 (21%)
Query: 62 TVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN----AVKNINDILGP 117
++ V L+ +D G + ++ S GG+ L + I + P
Sbjct: 52 SISVLLVLED--------GQ-VAHGDCAAVQY---SGAGGRDPLFLAKDFIPVIEKEIAP 99
Query: 118 KLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAI-LGVSLSVCRAGAGAKGVPLYKHIQE 176
KL+G +I + + E D AI G++ ++ A A + V + + I++
Sbjct: 100 KLIGREITN---FKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRD 156
Query: 177 LSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGII 236
+ VP F + + MI ++ + H L +
Sbjct: 157 EYNPGAEINAVPVF-----AQSGDDRYDNVDKMI-----------IKEADVLPHALINNV 200
Query: 237 KEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296
+EK G + E + L D I K+ + D A G
Sbjct: 201 EEKLGLKG-------------EKLLEYVKWLRDRII------KLRVREDYAPIFHIDVYG 241
Query: 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSS 352
F A + E + F + IE P D +D + L++
Sbjct: 242 TIGAAFDVDIKAMADYIQT------LAEAAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAE 294
Query: 353 VD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
+D +LV D+ T + + K+ + + +K L
Sbjct: 295 LDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDL 335
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-08
Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 54/288 (18%)
Query: 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPL 170
+ND + P L G D+ ++ + + + G+S ++ A A A G
Sbjct: 93 LNDHIKPLLEGRDVDAFLPNARFFDKL--RIDGNLLHTAVRYGLSQALLDATALASGRLK 150
Query: 171 YKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYH 230
+ + + + +P F G + + MI L+ + H
Sbjct: 151 TEVVCDEWQLPCVPEAIPLF-----GQSGDDRYIAVDKMI-----------LKGVDVLPH 194
Query: 231 ILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASE 290
L ++EK G + RE + L+D I + + + + +
Sbjct: 195 ALINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSPRYHPTLHIDVYG 241
Query: 291 FFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD----QDDWSSW 346
+ D V A+ + L ++ + P+ IE P D D
Sbjct: 242 TIGLIFDMDP-----------VRCAEYIASL-EKEAQGLPL-YIEGPVDAGNKPDQIRML 288
Query: 347 ASLQSSVD-----IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
++ + +++V D+ + I + SC+ + +K L
Sbjct: 289 TAITKELTRLGSGVKIVADE-WCNTYQDIVDFTDAGSCHMVQIKTPDL 335
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 394 | |||
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 100.0 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 99.97 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 99.96 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 99.95 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 99.95 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 99.94 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 99.83 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 96.73 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 95.91 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 95.75 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 95.55 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 95.46 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 95.45 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 95.3 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 94.98 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 93.63 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 93.63 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 93.06 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 92.9 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 91.84 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 91.3 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 84.96 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 82.17 |
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-86 Score=662.67 Aligned_cols=351 Identities=58% Similarity=0.971 Sum_probs=336.7
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|.|++|++|+|+||+|+|||||+|+|+ |.+|+++|||+|||.+||.++||+|+.+|.|+++.+|++.||+.|+|.|+|+
T Consensus 6 m~I~~i~ar~ildsrGnptvev~v~~~~g~~ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv~~vn~~iap~Lig~ 85 (441)
T 3qtp_A 6 MSIQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAVENVNTIIGPALLGK 85 (441)
T ss_dssp TBCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTC
T ss_pred cEEEEEEEEEEECCCCCEEEEEEEEECCCcEEEecccCCCCCcceeEeecCCCcccccCccHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999 9999999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
|+.||++||+.|.++|+|.|++++|+||+.|||+|+|+++|+.+|+|||+|||++.|.....+|+|++|+||||+|++++
T Consensus 86 ~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP~~nvinGG~ha~n~ 165 (441)
T 3qtp_A 86 NVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNA 165 (441)
T ss_dssp BTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEEEEEEEECGGGCSSS
T ss_pred ChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccceEeeecCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999766766678999999999999999999
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
+++||||++|.++.++.|+++++.|+|++||..|+.|||...+.+||+|||.|++++.+++|++|.+||+++||+++|.|
T Consensus 166 l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~~t~vgdEGgfap~~~~~~eaL~ll~~Ai~~aGy~~~i~i 245 (441)
T 3qtp_A 166 LAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKIEI 245 (441)
T ss_dssp CCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCCCSSHHHHHHHHHHHHHHHTCTTTCEE
T ss_pred cccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcccCCCCCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 99999999999999999999999999999999999999987889999999999999999999999999999999889999
Q ss_pred EEeccccccccc-CCeeeccCCCC--CCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC-CeEE
Q 016156 283 GMDVAASEFFTK-DGNYDLNFKKQ--PNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLV 358 (394)
Q Consensus 283 ~iD~aa~~~~~~-ng~Y~~~~~~~--~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~-i~I~ 358 (394)
++||||||||++ +|+|++.|++| +++.+..+|++|++++|.+++++|||.||||||+++|+++|++|+++++ |||+
T Consensus 246 ~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI~~IEDPl~~dD~eg~a~Lt~~lg~i~Iv 325 (441)
T 3qtp_A 246 AMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNKFTVEHGNFQIV 325 (441)
T ss_dssp EEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHTTTSEEE
T ss_pred ccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcceeeecCCCChHHHHHHHHHHHhcCCceEE
Confidence 999999999984 59999998776 3344457899999999999999999999999999999999999999996 9999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|||++++|+++++++|+.++||+++||++|+|||||
T Consensus 326 GDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITE 361 (441)
T 3qtp_A 326 GDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTE 361 (441)
T ss_dssp ESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHH
T ss_pred eccccccCHHHHHHHHHcCCCCEEEecccccccHHH
Confidence 999989999999999999999999999999999985
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-85 Score=658.97 Aligned_cols=350 Identities=56% Similarity=0.945 Sum_probs=336.7
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVD 123 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~d 123 (394)
+|++|++|+|+||+|+|||||+|+|+ |.+|+++|||+|||.+||.++||+|+.+|.|+++.+|++.||+.|+|.|+|+|
T Consensus 3 ~I~~i~areildSrGnpTvEv~v~~~~G~~ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~vn~~Iap~Lig~d 82 (452)
T 3otr_A 3 VIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEIVRQEIKPALLGKD 82 (452)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTCC
T ss_pred cceEEEEEEEEcCCCCEEEEEEEEECCccEEEeccccCCCCcceEEeecCCCcccccCccHHHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999 99999999999999999999999998899999999999999999999999999
Q ss_pred CCCHHHHHHHHH-HhcCCCC-----CCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc--ccccceeeEEeecC
Q 016156 124 IRDQAEVDAIML-EIDGTPN-----KSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK--ELVMPVPAFNVING 195 (394)
Q Consensus 124 p~~~e~Id~~l~-~~~~~~~-----~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~--~~~iP~p~~~~i~g 195 (394)
+.||++||+.|. .+|+|.| ++.+|+||+.|||+|+|+++|+.+|+|||+|||++.|.. ...+|+|++|+|||
T Consensus 83 ~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~~~lPvP~~nvinG 162 (452)
T 3otr_A 83 PCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVING 162 (452)
T ss_dssp TTCHHHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSSEEECEECEEEEEC
T ss_pred hHhHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcceecccceEEEecC
Confidence 999999999999 8999999 999999999999999999999999999999999776655 56899999999999
Q ss_pred CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 016156 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275 (394)
Q Consensus 196 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag 275 (394)
|.|+++++++|||||+|.++.++.|+++++.|+|++||..|+.|||...+.+||+|||.|++++.+++|++|.+||+++|
T Consensus 163 G~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~~t~vgDEGgfap~~~~~~eaL~ll~~Ai~~aG 242 (452)
T 3otr_A 163 GEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAAG 242 (452)
T ss_dssp GGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCCCCSHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999998788999999999999999999999999999999
Q ss_pred CCCCcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC
Q 016156 276 YTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD 354 (394)
Q Consensus 276 ~~gdi~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~ 354 (394)
|+++|.|++||||||||+ ++|+|++.|++|+++.+..+|++|++++|.+++++|||.||||||+++|+++|++|+++++
T Consensus 243 y~~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypIv~IEDPl~~dD~eg~a~Lt~~lg 322 (452)
T 3otr_A 243 YEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIISVEDPFDQDDFASFSAFTKDVG 322 (452)
T ss_dssp CTTTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHHT
T ss_pred CCceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCceEEecCCChhhHHHHHHHHHhhC
Confidence 988999999999999996 5799999998887665567899999999999999999999999999999999999999998
Q ss_pred --CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 355 --IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 355 --i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|||+|||++++|+++++++|+.++||+++||++|+|||||
T Consensus 323 ~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITE 364 (452)
T 3otr_A 323 EKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTE 364 (452)
T ss_dssp TTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHH
T ss_pred CCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccccccHHH
Confidence 9999999999999999999999999999999999999985
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-78 Score=612.60 Aligned_cols=340 Identities=47% Similarity=0.796 Sum_probs=318.9
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
|+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||.+||.+++|+++++|.|+++.++++.|++.|+|.|+|
T Consensus 26 m~I~~i~~r~i~dsrg~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av~~v~~~iap~LiG 105 (449)
T 3uj2_A 26 LEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAVQNINTEISEILSG 105 (449)
T ss_dssp TBEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTT
T ss_pred eEEEEEEEEEEECCCCCCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999999 999 999999999999999999999988999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.+|++||+.|.+++++++++++|+||++|||+||||++||.+|+|||+||| |..++++|+|+|+++|||.|+++
T Consensus 106 ~d~~~~e~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLG---G~~~~~lpvp~~n~inGG~ha~~ 182 (449)
T 3uj2_A 106 MDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLG---GLNANRLPVPMMNILNGGAHAAN 182 (449)
T ss_dssp SBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHH---GGGCCBCCEECEEEEECSTTSSS
T ss_pred CCccCHHHHHHHHHHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhC---CCCCCceeeeeEEEecCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999 76778999999999999999999
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-C
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-K 279 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-d 279 (394)
++++||||++|.++.+++++++++.+||+++|..++.| | ..+++|++|+|.|+++++++++++|++||+++||+ | |
T Consensus 183 ~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~-g-~~t~vGdeggfap~~~~~~e~l~~i~~AIr~agy~~G~d 260 (449)
T 3uj2_A 183 TVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSK-G-LATSVGDEGGFAPDLASDEEAIEYILEAVKLAGYEPGRD 260 (449)
T ss_dssp SCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred ccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhc-C-CccccCCCCCcCCCccCHHHHHHHHHHHHHHhccccCCc
Confidence 99999999999999999999999999999999988877 5 56789999999999998999999999999999986 6 8
Q ss_pred cEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCe
Q 016156 280 INIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQ 356 (394)
Q Consensus 280 i~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~ 356 (394)
|.|++|+|++|||+ ++|+|++. . .+..+|++|+++++.+++++|+|.||||||+++|+++|++|++++ +||
T Consensus 261 v~l~vD~aase~~~~~~g~Y~l~--~----~~~~~t~~eai~~~~~lle~y~i~~IEdPl~~dD~eg~~~L~~~~~~~ip 334 (449)
T 3uj2_A 261 FVLAMDAASSEWKGEKKGEYILP--K----CKRKFASEELVAHWKSLCERYPIVSIEDGLDEEDWEGWQYMTRELGDKIQ 334 (449)
T ss_dssp BEEEEECCGGGCBCSSTTEEECT--T----TCCEEEHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSE
T ss_pred eEEEEEcchhhhccccCceeecc--C----cccccCHHHHHHHHHHHHHhcCceEEECCCCcchHHHHHHHHHHhCCCce
Confidence 99999999999998 36899975 1 124789999999999999999999999999999999999999999 699
Q ss_pred EEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 357 LVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 357 I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+|||++++|+++++++|+.++||+++||++|+|||||
T Consensus 335 I~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTe 372 (449)
T 3uj2_A 335 LVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSE 372 (449)
T ss_dssp EEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHH
T ss_pred EECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHH
Confidence 99999988899999999999999999999999999985
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-78 Score=607.87 Aligned_cols=335 Identities=47% Similarity=0.791 Sum_probs=319.7
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||.+||.+++|++ ++|.|+++.+++++|++.|+|.|+|+
T Consensus 6 ~i~~i~~r~i~dsrG~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~-~~y~gkgv~~av~~v~~~iap~LiG~ 84 (417)
T 3qn3_A 6 VIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDND-ERFGGKGVLKAVANVNETIADEILGL 84 (417)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCS-TGGGGTCCHHHHHHHHTHHHHHHTTS
T ss_pred eeeEEEEEEEEcCCCCceEEEEEEECCCCEEEEecCCCCccccceeeeecCCC-ccccCccHHHHHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999 988 9999999999999999999999 79999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+|++||+.|.+++++++++++|+||++|||+||||++||.+|+|||+||| |..++++|+|++|++|||.|++++
T Consensus 85 d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLG---G~~~~~lPv~~~nvinGG~ha~~~ 161 (417)
T 3qn3_A 85 DAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLG---GANASILPVPMCNIINGGAHANNN 161 (417)
T ss_dssp BTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHH---GGGCCEECEEEEEEEECGGGSSSS
T ss_pred CccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCcceeeeeeeeecCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999 766789999999999999999999
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
+++||+|++|.+..+++++++++.++|+++|..++.| | ..+++|++|+|.|++++++++++.|.+|++++||++||.|
T Consensus 162 ~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~k-g-~~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy~~dv~l 239 (417)
T 3qn3_A 162 VDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANS-G-HSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGYENRVKI 239 (417)
T ss_dssp CCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTCTTTEEE
T ss_pred ccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhc-C-cccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCCCCCceE
Confidence 9999999999999999999999999999999999877 5 4679999999999998889999999999999998679999
Q ss_pred EEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeEEec
Q 016156 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLVGD 360 (394)
Q Consensus 283 ~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I~gd 360 (394)
++|+|++|||+ +|+|++. +..+|++|++++|.+++++|||.||||||+++|+++|++|+++++ +||+||
T Consensus 240 ~vD~~ase~~~-~g~y~l~--------~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~e~~~~L~~~~g~~ipI~gD 310 (417)
T 3qn3_A 240 ALDVASTEFFK-DGKYHME--------GKAFSSEALIERYVELCAKYPICSIEDGLAENDFEGWIKLTEKLGNKIQLVGD 310 (417)
T ss_dssp EEECCGGGGEE-TTEEEET--------TEEECHHHHHHHHHHHHHHSCEEEEESSSCTTCHHHHHHHHHHHTTTSEEEES
T ss_pred EEECCchhhcc-CCeeecC--------CCccCHHHHHHHHHHHHhhcceeEEecCCCcccHHHHHHHHHhhCCCCceecC
Confidence 99999999998 7999985 247899999999999999999999999999999999999999994 999999
Q ss_pred CccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 361 DLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 361 e~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++|+++++++|+.++||+++||++|+|||||
T Consensus 311 E~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTe 344 (417)
T 3qn3_A 311 DLFVTNEDILREGIIKKMANAVLIKPNQIGTITQ 344 (417)
T ss_dssp TTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHH
T ss_pred CcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHH
Confidence 9988889999999999999999999999999985
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-77 Score=606.86 Aligned_cols=336 Identities=47% Similarity=0.823 Sum_probs=312.8
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||.+||.+++|+|+++|.|+++.++++.|++.|+|.|+|+
T Consensus 4 ~i~~~~~r~i~dsrg~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~av~~v~~~iap~LiG~ 83 (428)
T 3tqp_A 4 TITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQAVENVNGPIRDALLGQ 83 (428)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTTC
T ss_pred eEEEEEEEEEEcCCCCCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999 988 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC-CcccccceeeEEeecCCcCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG-TKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g-~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
||.+|++||+.|.+++++++++++|.||++|||+||||++||.+|+|||+||| | ..+.++|+|+|+++|||.|+++
T Consensus 84 d~~~~~~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLG---G~~~~~~~pvp~~~~inGG~ha~~ 160 (428)
T 3tqp_A 84 DPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLG---GDGGPFSMPVPMMNIINGGAHATN 160 (428)
T ss_dssp CTTCHHHHHHHHHHHHCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHH---TTTCCCCBCEEEEEEEECC----C
T ss_pred CccCHHHHHHHHHHhcCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCceeeeEEEEEecCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999 7 5556899999999999999999
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-C
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-K 279 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-d 279 (394)
++++||||++|.++.+++++++++.+||+++|.+++.| | ..+.+|++|+|.|++++++++|+++.+||+++||+ | |
T Consensus 161 ~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~-g-~~t~vGdegg~ap~~~~~~e~l~~i~~Air~agy~~G~d 238 (428)
T 3tqp_A 161 NLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSR-G-LMSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238 (428)
T ss_dssp CCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCCBTTT
T ss_pred ccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhccc-c-cccccCCCCCcCCCcccHHHHHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999999999999999988877 5 46789999999999988899999999999999986 6 9
Q ss_pred cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeE
Q 016156 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQL 357 (394)
Q Consensus 280 i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I 357 (394)
|.|++|+||||||+ ||+|++. +..||++|+++++.+++++|||.||||||+++|+++|++|+++++ |+|
T Consensus 239 v~l~vD~aase~~~-~g~Y~l~--------~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~eg~~~L~~~~~~pI~i 309 (428)
T 3tqp_A 239 IYLALDAASSELYQ-NGRYDFE--------NNQLTSEEMIDRLTEWTKKYPVISIEDGLSENDWAGWKLLTERLENKVQL 309 (428)
T ss_dssp BEEEEECCGGGSEE-TTEECCS--------SSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHHTTTSEE
T ss_pred eEEEEecchhhhcc-CCceecc--------ccccCHHHHHHHHHHHHhhcccceEeCCCCcccHHHHHHHHHhcCCCcce
Confidence 99999999999998 7999975 247899999999999899999999999999999999999999987 888
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|||++++++++++++|+.++||+++||++|+|||||
T Consensus 310 vGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTe 346 (428)
T 3tqp_A 310 VGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTE 346 (428)
T ss_dssp EESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred eccccccCCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 9999989999999999999999999999999999985
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=587.77 Aligned_cols=348 Identities=59% Similarity=0.958 Sum_probs=325.1
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhc--
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV-- 120 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~Li-- 120 (394)
.|++|++|+|+||+|+|||+|+|+|+ | + ++.+|+++|||.+|+.+++|+++++|.|+++.++++.|++.|+|.|+
T Consensus 1 ~I~~v~~r~i~dsrg~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~ 79 (436)
T 2al1_A 1 AVSKVYARSVYDSRGNPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKA 79 (436)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHH
T ss_pred CeeEEEEEEEEcCCCCcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHC
Confidence 48999999999999999999999999 9 7 89999999999999999999998899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc--ccccceeeEEeecCCcC
Q 016156 121 GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK--ELVMPVPAFNVINGGSH 198 (394)
Q Consensus 121 G~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~--~~~iP~p~~~~i~gG~~ 198 (394)
|+||.+|++||+.|.+++++.+++++|++|++||||||||++||.+|+|||+|||.+.|.. ++++|+|+|+++|||.|
T Consensus 80 G~d~~~~~~i~~~m~~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpvp~~n~inGg~h 159 (436)
T 2al1_A 80 NIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSH 159 (436)
T ss_dssp TCCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECEEEEEEEECGGG
T ss_pred CCChhhHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeEEEEEeecCccc
Confidence 9999999999999999888888889999999999999999999999999999999555555 67899999999999999
Q ss_pred CCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 016156 199 AGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG 278 (394)
Q Consensus 199 ~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~g 278 (394)
+++++++||||++|.+..+++++++++.++|+++|..++.|+|...+++|++|+|.|+.++++++++++++|++++|++|
T Consensus 160 a~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~~~G~~g 239 (436)
T 2al1_A 160 AGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDG 239 (436)
T ss_dssp SSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHHHHTCTT
T ss_pred cCCccccccceecCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999988886557899999999999889999999999999999766
Q ss_pred CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEE
Q 016156 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLV 358 (394)
Q Consensus 279 di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~ 358 (394)
+|.|++|+|+++||+ |++|++.|++++.+.+..||++|++++|.+++++|||.||||||+++|+++|++|+++.++||+
T Consensus 240 ~v~l~vD~aase~~~-n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl~~dD~~g~~~l~~~~~ipI~ 318 (436)
T 2al1_A 240 KVKIGLDCASSEFFK-DGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIV 318 (436)
T ss_dssp TCEEEEECCGGGGEE-TTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHTTCCSEEE
T ss_pred ceEEEEechhhhhcc-CCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCCCCcCHHHHHHHHhcCCCeEE
Confidence 899999999999997 8999986654433334678999999999999999999999999999999999999999999999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|||++++|+++++++|+.++||+++||++|+|||||
T Consensus 319 gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGite 354 (436)
T 2al1_A 319 ADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSE 354 (436)
T ss_dssp ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred ECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHH
Confidence 999988899999999999999999999999999985
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-74 Score=586.48 Aligned_cols=348 Identities=65% Similarity=1.099 Sum_probs=325.0
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhc--C
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV--G 121 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~Li--G 121 (394)
.|++|++|+|+||+|+|||+|+|+|+ |+.++++|+++|||++|+.+++|+++.+|.++++.++++.|++.|+|.|+ |
T Consensus 1 ~I~~v~~r~i~dsrg~~tv~V~V~t~~G~G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v~~~iap~Li~~G 80 (439)
T 2akz_A 1 SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSG 80 (439)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHC
T ss_pred CeeEEEEEEEEcCCCCceEEEEEEECCCceEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999 98789999999999999999999887789999999999999999999999 9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.+|++||+.|.+++++.++++++.+|++|||+||||++||.+|+|||+|||.+.|..++++|+|+|+++|||.|+++
T Consensus 81 ~d~~~~~~i~~~m~~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~~~~inGg~ha~~ 160 (439)
T 2akz_A 81 LSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGN 160 (439)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEEEEEEECGGGSSS
T ss_pred CChhhHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEEEEEecCcccccc
Confidence 99999999999999988888888999999999999999999999999999999955555567899999999999999999
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcE
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~ 281 (394)
++++||||++|.+..+++++++++.++|+++|..++.|+|..++++|++|+|.|+.++++++++.|++|++++|++|++.
T Consensus 161 ~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ai~~~G~~g~v~ 240 (439)
T 2akz_A 161 KLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIV 240 (439)
T ss_dssp SCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHHHHHHHTCTTTCE
T ss_pred ccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHHHHHHcCCccceE
Confidence 99999999999999999999999999999999999999886667899999999999889999999999999999766899
Q ss_pred EEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecC
Q 016156 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD 361 (394)
Q Consensus 282 l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde 361 (394)
|++|+|+++||+ |++|++.++.| .+.+..||++|++++|.+++++|||.||||||+++|+++|++|++++++||+|||
T Consensus 241 l~vD~a~se~~~-~g~y~l~~~~~-~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~~dD~~g~~~L~~~~~ipI~gDE 318 (439)
T 2akz_A 241 IGMDVAASEFYR-DGKYDLDFKSP-TDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDD 318 (439)
T ss_dssp EEEECCGGGGEE-TTEECTTTTSS-CCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHTCSSEEEEST
T ss_pred EEEechHhhhcc-CCeeEEecccc-ccccccCCHHHHHHHHHHHHHhCCCcEEECCCCcccHHHHHHHHhCCCCEEEeCC
Confidence 999999999997 89999875443 2234578999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 362 LLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 362 ~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++|+++++++|+.++||+++||++|+|||||
T Consensus 319 ~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGite 351 (439)
T 2akz_A 319 LTVTNPKRIERAVEEKACNCLLLKVNQIGSVTE 351 (439)
T ss_dssp TTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred CccCCHHHHHHHHHhCCCCEEEechhhcCCHHH
Confidence 888899999999999999999999999999985
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=543.23 Aligned_cols=347 Identities=59% Similarity=0.956 Sum_probs=317.7
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
|+|++|++|+|++++++|+|+|+|+|+ | + ++.+|+++|||..|+.+++|+++++|.|+++.++++.|++.|+|.|+|
T Consensus 4 m~I~~i~~~~v~~~~~~p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~LiG 82 (432)
T 2ptz_A 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALIG 82 (432)
T ss_dssp TSCCEEEEEEEECTTSCEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEecCCCCcEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHHHHHHHHHHHHCC
Confidence 899999999999999999999999999 9 7 899999999999999999999988999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.+|++||+.|.+++++.++++++.+|++|||+||||++||.+|+|||+|||.+.|..+.++|+|+|++++||.|+++
T Consensus 83 ~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~~~~i~gg~~a~~ 162 (432)
T 2ptz_A 83 RDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGN 162 (432)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEEEEEEECSTTSSS
T ss_pred CChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeEEEEecCcccccC
Confidence 99999999999999988888888999999999999999999999999999999955454456799999999999999888
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcE
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~ 281 (394)
.+++||+|++|.+..+++++++++.++|+++|..++.|+|...+.+|++|+|.|++++.++.++.+.+|++++|++|++.
T Consensus 163 ~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~Air~~G~~g~v~ 242 (432)
T 2ptz_A 163 ALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFA 242 (432)
T ss_dssp SCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHHHHHHTTCTTSCE
T ss_pred CCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHHHHHHhCCcCCcE
Confidence 88999999999999999999999999999999988888886557899999999988878889998889999988655899
Q ss_pred EEEeccccccccc-CCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCeEE
Q 016156 282 IGMDVAASEFFTK-DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLV 358 (394)
Q Consensus 282 l~iD~aa~~~~~~-ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~I~ 358 (394)
|++|+|+++||+. +++|++.++.+. +..+++.+++++|.+++++|||.||||||+++|+++|++|++++ ++||+
T Consensus 243 l~vDan~~~~~~~~~~~y~~~~~~~~---~~~~~a~~~~~~~~~~l~~y~i~~iEdPl~~~D~~g~~~l~~~~g~~ipI~ 319 (432)
T 2ptz_A 243 ICMDCAASETYDEKKQQYNLTFKSPE---PTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQIV 319 (432)
T ss_dssp EEEECCGGGGEETTTTEEETTTTSSS---CCEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHTTTTSEEE
T ss_pred EEEECcccccccccCceeEeeccccc---cCCCCHHHHHHHHHHHHHhCCceEEECCCCcchHHHHHHHHHhcCCCCeEE
Confidence 9999999999972 288987421100 23578999999999999999999999999999999999999999 69999
Q ss_pred ecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 359 gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|||++++|+++++++|+.++||++|||++|+|||||
T Consensus 320 gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGite 355 (432)
T 2ptz_A 320 GDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISE 355 (432)
T ss_dssp ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred ecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence 999888999999999999999999999999999985
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=529.11 Aligned_cols=339 Identities=50% Similarity=0.814 Sum_probs=313.9
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
|+|++|++|+|+|++|+++|+|+|+|+ |++ ++++|+++++|..|+.+++|+++++|.|+++.++++.|++.|+|.|+|
T Consensus 1 ~~I~~v~~~~v~~srg~~~v~V~v~td~G~~Gge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~~~i~~~l~p~LiG 80 (431)
T 2fym_A 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIG 80 (431)
T ss_dssp CBEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTT
T ss_pred CeeEEEEEEEEEcCCCCeeEEEEEEECCCCccceecCcccccCcccceeccCCcccccccccHHHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999 987 899999999999999999999988999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccc----cceeeEEeecCCc
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELV----MPVPAFNVINGGS 197 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~----iP~p~~~~i~gG~ 197 (394)
+||.++++||+.|.+++++.++++++.+|++|||+||||++||.+|+|||+||| |..+++ +|+|+|++++||.
T Consensus 81 ~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLG---G~~~~~~~~~~pv~~~~~~~gg~ 157 (431)
T 2fym_A 81 KDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIA---ELNGTPGKYSMPVPMMNIINGGE 157 (431)
T ss_dssp SBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHH---HHTTCTTCCCCCEECEEEEECGG
T ss_pred CCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhc---CcccccccccccceeEeeccCcc
Confidence 999999999999998888877788999999999999999999999999999999 544445 9999999999999
Q ss_pred CCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 016156 198 HAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT 277 (394)
Q Consensus 198 ~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~ 277 (394)
|+++.++++++|++|.....++++++++.++|+++|..++.+ | ...++|++|+|.|+++++.+++++||++++++|++
T Consensus 158 ~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~-g-~~~kvG~~gg~~~~~~~d~~~l~~vreai~~~g~~ 235 (431)
T 2fym_A 158 HADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAK-G-MNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYE 235 (431)
T ss_dssp GSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-T-CCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCC
T ss_pred ccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhc-C-cccccCcccCCCCCccchHHHHHHHHHHHHHhccC
Confidence 998888999999999888899999999999999999988766 5 33789999999999998999999999999999998
Q ss_pred -C-CcEEEEecccccccccCCeeeccCCCCCCCCC-cccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc-
Q 016156 278 -G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGA-HVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV- 353 (394)
Q Consensus 278 -g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~-~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~- 353 (394)
| |+.|++|+|||+||+ |++|++..+ + ..||++++++++.++.++|+|.|||||++++|+++|++|++++
T Consensus 236 ~G~dv~l~vDaaas~~~~-~~~Y~~~~~------n~~~~t~~~ai~~~~~L~~~~~i~~iEePl~~~d~~~~~~l~~~~~ 308 (431)
T 2fym_A 236 LGKDITLAMDCAASEFYK-DGKYVLAGE------GNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLG 308 (431)
T ss_dssp BTTTBEEEEECCGGGGEE-TTEEEEGGG------TTEEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHT
T ss_pred CCCccEEEEeechhhccc-cCceeeccC------CCCCCCHHHHHHHHHHHHHhCCceEEECCCCcccHHHHHHHHHHhC
Confidence 6 899999999999998 899998621 2 5789999999988865559999999999999999999999999
Q ss_pred -CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 354 -DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 354 -~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||++||++++++++++++++.+++|++|||++|+|||||
T Consensus 309 ~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite 350 (431)
T 2fym_A 309 DKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTE 350 (431)
T ss_dssp TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHH
T ss_pred CCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHH
Confidence 79999999668899999999999999999999999999985
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-66 Score=524.97 Aligned_cols=343 Identities=49% Similarity=0.842 Sum_probs=309.6
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
.|++|++|+|+||+|+++|+|+|+|+ |++ ++++|+++++|..|+.+++|+++++|.++++.++++.|++.|+|.|+|+
T Consensus 13 ~i~~~~~r~i~dsrg~~~v~V~V~td~G~~Gge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~~i~~~l~p~LiG~ 92 (444)
T 1w6t_A 13 IITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAIIGY 92 (444)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTS
T ss_pred hcceeEEEEEEcCCCCceEEEEEEECCCCEeeEecccccccccceeeeeccCcccccccccHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999999999999 987 8889999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.++++||+.|.+++++.++++++.+|++|||+||||++||.+|+|||+||| |..++++|+|++++++||.|+++.
T Consensus 93 d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLG---G~~~~~vp~~~~~~~~gg~~a~~~ 169 (444)
T 1w6t_A 93 DVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLG---GFNTKVLPTPMMNIINGGSHSDAP 169 (444)
T ss_dssp BTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHH---CTTCCEECEECEEEEECGGGCSSS
T ss_pred CHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCcccccccccceeccccccccc
Confidence 99999999999998878877788999999999999999999999999999999 766778999999999999998888
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-C-Cc
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT-G-KI 280 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~-g-di 280 (394)
+++||+|++|.....++++++++.++|+++|..++.| |. ..++|++|+|.++++++.+++++||+|++++||. | |+
T Consensus 170 l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~k-g~-~~kvG~~gg~~~~~~~d~~~l~avreav~~agy~pG~dv 247 (444)
T 1w6t_A 170 IAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSR-GL-ETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDV 247 (444)
T ss_dssp CCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHT-TC-CCCBCTTSCBCCCCSSHHHHHHHHHHHHHHTTCCBTTTB
T ss_pred cchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhc-CC-ccccCCCCCCCCchHhHHHHHHHHHHHHHHhccCCCCCc
Confidence 9999999999888899999999999999999988877 53 4789999999999988999999999999999987 5 89
Q ss_pred EEEEeccccccccc-CCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc--CCeE
Q 016156 281 NIGMDVAASEFFTK-DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQL 357 (394)
Q Consensus 281 ~l~iD~aa~~~~~~-ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~--~i~I 357 (394)
.|++|+|||+||++ |++|++. .+.. .....||++|+++++.++.++|+|.|||||++++|+++|++|++++ ++||
T Consensus 248 ~L~vDaaas~~~~~~n~~y~~~-~n~~-~~~~~~t~~eai~~~~~l~~~~~i~~iEePl~~~d~~~~~~l~~~~~~~ipI 325 (444)
T 1w6t_A 248 FLGFDCASSEFYDKERKVYDYT-KFEG-EGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQL 325 (444)
T ss_dssp EEEEECCGGGGBC--CCCEETH-HHHC-TTCCEECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEE
T ss_pred EEEEEccchhcccccCCceeec-cccC-cccCCCCHHHHHHHHHHHHHhCCcEEEECCCChhhHHHHHHHHHhhCCCCeE
Confidence 99999999999973 7899861 0000 0012489999999988877789999999999999999999999999 7999
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||++++++++++++++.+++|++|||++++||||+
T Consensus 326 a~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite 362 (444)
T 1w6t_A 326 VGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTE 362 (444)
T ss_dssp EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHH
T ss_pred EeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHH
Confidence 9999867899999999999999999999999999985
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-64 Score=511.71 Aligned_cols=338 Identities=56% Similarity=0.929 Sum_probs=313.4
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
|+|++|+++.+.+++|+++|+|+|+|+ |++ .+++|+++++|.+|+.+++|+++ +|.++++.++++.|++.|+|.|+|
T Consensus 9 MkI~~i~~~~v~~s~g~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~-~~~g~~~~~~~~~i~~~l~p~LiG 87 (427)
T 2pa6_A 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEK-RFGGKGVLMAVENVNSIIRPEILG 87 (427)
T ss_dssp GBEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSS-GGGGTCCHHHHHHHHHTHHHHHTT
T ss_pred CEEEEEEEEEEEcCCCCceEEEEEEECCCCeeeEecccccccCcceeEeecCCcc-ccccccHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999 987 78999999999999999999885 899999999999999899999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.++++||+.|.+++++.++++++.+|++|||+||||++||.+|+|||+||| |..++++|+|++++++||.|+++
T Consensus 88 ~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLG---g~~~~~vp~~~~~~~~gg~~~~~ 164 (427)
T 2pa6_A 88 YDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLG---GFNSYVMPVPMMNVINGGKHAGN 164 (427)
T ss_dssp CBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHH---CSCCCEECEECEEEEECSTTTSS
T ss_pred CCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhc---CccccccccchhccccccccccC
Confidence 999999999999998777766677888999999999999999999999999999 76677899999999999999888
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcE
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~ 281 (394)
.++++|+|+.|.....++++.++..+||+++|..++.|+|...+++|++|+|.++++.+.+++++||+|++++|++|++.
T Consensus 165 ~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~~~G~~~~~~ 244 (427)
T 2pa6_A 165 DLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYEDEVV 244 (427)
T ss_dssp SCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHHHHTCTTTCE
T ss_pred CcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHHHhCCCCCcE
Confidence 89999999999888999999999999999999888878887667899999998888888999999999999988434899
Q ss_pred EEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecC
Q 016156 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD 361 (394)
Q Consensus 282 l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde 361 (394)
|++|+|+|+||+ |+.|++. ++.||++|+++++.+++++|+|.|||||++++|+++|++|++++++||++||
T Consensus 245 L~vDa~as~~~~-n~~~~~~--------n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE 315 (427)
T 2pa6_A 245 FALDAAASEFYK-DGYYYVE--------GKKLTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMITKELDIQIVGDD 315 (427)
T ss_dssp EEEECCGGGGEE-TTEEEET--------TEEECHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHSSSEEEEST
T ss_pred EEEEcchhcccc-CCceeec--------CCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhhHHHHHHHHhhCCCeEEeCc
Confidence 999999999997 8999874 3578999999988888999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 362 LLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 362 ~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++++++++++.+++|++|||++++||||+
T Consensus 316 ~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite 348 (427)
T 2pa6_A 316 LFVTNVERLRKGIEMKAANALLLKVNQIGTLSE 348 (427)
T ss_dssp TTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHH
T ss_pred cccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 878889999999999999999999999999985
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-45 Score=369.01 Aligned_cols=279 Identities=16% Similarity=0.220 Sum_probs=212.0
Q ss_pred hcCCc--ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhH
Q 016156 39 TASSS--AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDIL 115 (394)
Q Consensus 39 ~f~~~--~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l 115 (394)
||++- ++|++|+++.+... +.+.|.|+|+|| |++ |+||+.. .+. ..++...|++.|
T Consensus 19 yfqsm~~~~It~v~~~~v~~~-~~~~vlV~v~Td~G~~----------G~GEa~~-------~~~---~~~~~~~i~~~l 77 (421)
T 4hnl_A 19 YFQSMTPTIITDVKSFAIKPD-RHNLVVVKVETNKGIS----------GLGCSTF-------QFR---PLAVKTVVDEYL 77 (421)
T ss_dssp --CCCCCCBEEEEEEEEECSS-SSCEEEEEEEETTSCC----------EEEECCC-------TTS---HHHHHHHHHHTH
T ss_pred eecccCCceEEEEEEEEECCC-CceEEEEEEEECCCCE----------EEEeccC-------CCC---HHHHHHHHHHHH
Confidence 77654 67999999888544 446799999999 986 9999732 222 345556688899
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecC
Q 016156 116 GPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVING 195 (394)
Q Consensus 116 ~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~g 195 (394)
+|.|+|+||.++++||+.|... ..++++++..+|++|||+||||++||.+|+|||+||| |+.++++|+ |+++.+
T Consensus 78 ap~LiG~dp~~ie~i~~~~~~~-~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLG---G~~r~~v~~--y~~~~~ 151 (421)
T 4hnl_A 78 RPLLMGRDANEIEDIWQVMNVN-SYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLG---GKARTAIPA--YTHAVA 151 (421)
T ss_dssp HHHHTTCBTTCHHHHHHHHHHT-TSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSCEEE--EEEEEE
T ss_pred HHHHCCCChhhHHHHHHHHHhh-ccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcC---CccCcccce--ecccCC
Confidence 9999999999999999999763 3455567778999999999999999999999999999 777778776 554322
Q ss_pred CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcc----cCCCCCCCCC-------CCChHHHH
Q 016156 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACN----VGDEGGFAPN-------VQDNREGL 264 (394)
Q Consensus 196 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~----vg~~g~~~~~-------~~~~~~~l 264 (394)
. +.+ ...+++.++..+||+++| .|.|..... ...+..+... ++.+.+++
T Consensus 152 ~-------~~~---------~~~~~a~~~~~~G~~~~K----~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v 211 (421)
T 4hnl_A 152 D-------NLD---------DLYHEIDRFLAAGYRYIR----CQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMF 211 (421)
T ss_dssp S-------SHH---------HHHHHHHHHHHTTCSEEE----EEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHH
T ss_pred C-------CHH---------HHHHHHHHHHHhhHHHHh----hccccccCCchhccccccccccccccchhHHHHHHHHH
Confidence 1 112 246677788888899888 565532111 1111111110 11223444
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHH
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~ 344 (394)
+++|+++ | +++.|++|+ |+.| +.++++++ .+.+++|+|.|||||++++|++
T Consensus 212 ~avR~a~---G--~~~~l~vDa--------n~~~---------------~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~ 262 (421)
T 4hnl_A 212 AAIKEKY---G--NQFQMLHDV--------HERL---------------HPNQAIQF-AKAAEPYQLFFLEDILPPDQSH 262 (421)
T ss_dssp HHHHHHH---T--TSSEEEEEC--------TTCS---------------CHHHHHHH-HHHHGGGCCSEEECCSCGGGGG
T ss_pred HHHHHHh---C--CCceEeccc--------cccC---------------CHHHHHHH-HHHhhhhhhcccccCCcccchH
Confidence 4455544 4 489999999 5655 57788885 5569999999999999999999
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 263 ~~~~l~~~~~ipIa~dE~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGite 311 (421)
T 4hnl_A 263 WLTQLRSQSATPIATGEL-FNNPMEWQELVKNRQIDFMRAHVSQIGGITP 311 (421)
T ss_dssp GHHHHHTTCCCCEEECTT-CCSGGGTHHHHHTTCCSEECCCGGGGTSHHH
T ss_pred HHHHHHhcCCCCeecCcc-eehhHHHHHHHhcCCceEEEeCCCCCCCHHH
Confidence 999999999999999997 5789999999999999999999999999985
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=364.15 Aligned_cols=284 Identities=15% Similarity=0.182 Sum_probs=223.1
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|+|++|+++.+. +. .++++|+|+|+ | + |+||+ . .+.+..++...|++ |+|.|+|+
T Consensus 6 MkI~~i~~~~~~-~~-~~~v~V~v~td~G-~----------G~Ge~-~---------~g~~~~~~~~~i~~-l~p~liG~ 61 (410)
T 2qq6_A 6 PRITRVETAAIR-AV-GPSVLVRVWAGDE-H----------GLGEC-Y---------PSAPAAGIHHIVMN-MEEQLLGE 61 (410)
T ss_dssp CCCCEEEEEEEC-CC--CEEEEEEEETTE-E----------EEEEE-C---------CCSCHHHHHHHHHT-THHHHTTC
T ss_pred ceEeEEEEEEEC-CC-CCEEEEEEEECCc-E----------EEEEe-c---------CCCChHHHHHHHHH-HHHHhCCC
Confidence 899999999996 44 46899999999 8 7 99997 3 12246777778887 99999999
Q ss_pred CCCCHHHHHHHHHHhc-CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeec-C-CcCC
Q 016156 123 DIRDQAEVDAIMLEID-GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVIN-G-GSHA 199 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~-~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~-g-G~~~ 199 (394)
||.++++||+.|.+.. .+.++++++.+|++|||+||||++||.+|+|||+||| |..++++| +|++++ | +.|+
T Consensus 62 d~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLG---g~~~~~vp--~y~~~~~g~~~h~ 136 (410)
T 2qq6_A 62 DPRDVERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLG---GAFRRRVR--LYADCNAGTVDAA 136 (410)
T ss_dssp CTTCHHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTT---CCSCSEEE--EEEECCCSEECTT
T ss_pred CccHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcC---CCccCcee--EEEeccccccccc
Confidence 9999999999998753 2335567788999999999999999999999999999 76555555 577766 4 5677
Q ss_pred CCCC-cccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhc----CCCCcccCCCCCCCC--CCCChHHHHHHHHHHHH
Q 016156 200 GNNL-AMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY----GQDACNVGDEGGFAP--NVQDNREGLVLLTDAIE 272 (394)
Q Consensus 200 ~~~l-~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~----G~~~~~vg~~g~~~~--~~~~~~~~l~~v~~Av~ 272 (394)
++.+ +++++|+.| +...+++.++..+||+.+| .|. |.... .++|++.+ +++.+.+.+++||+++
T Consensus 137 ~~~~~~~~~~~~~~--~~~~~~a~~~~~~Gf~~vK----ik~~~~~G~~~~--~~~G~~~~~~~~~~~~e~v~avRea~- 207 (410)
T 2qq6_A 137 AHHIEGGLFEEGSN--EEYIAVAREAVERGFDAIK----LDVDDITGPLHR--DFWNGAISPREHEAMVARVAAVREAV- 207 (410)
T ss_dssp CCEEECCTTCSTHH--HHHHHHHHHHHHTTCSEEE----EECCCSSSTTCS--CSSSCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccccccCCH--HHHHHHHHHHHHcCCCEEE----eeccccCCcccC--CcCccccchhhHHHHHHHHHHHHHhc-
Confidence 6655 366666543 3456777777788888888 443 32111 13455543 2233455666666665
Q ss_pred HcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhh
Q 016156 273 KAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSS 352 (394)
Q Consensus 273 ~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~ 352 (394)
| +|+.|++|+ |+.| +.+++++++ +.+++|+|.|||||++++|+++|++|+++
T Consensus 208 --G--~d~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~ 259 (410)
T 2qq6_A 208 --G--PEVEVAIDM--------HGRF---------------DIPSSIRFA-RAMEPFGLLWLEEPTPPENLDALAEVRRS 259 (410)
T ss_dssp --C--SSSEEEEEC--------TTCC---------------CHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHHHTT
T ss_pred --C--CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHHhhcCCCeEECCCChhhHHHHHHHHhh
Confidence 3 489999999 5555 567899865 45999999999999999999999999999
Q ss_pred cCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 353 VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 353 ~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 260 ~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite 300 (410)
T 2qq6_A 260 TSTPICAGENV-YTRFDFRELFAKRAVDYVMPDVAKCGGLAE 300 (410)
T ss_dssp CSSCEEECTTC-CSHHHHHHHHHTTCCSEECCBHHHHTHHHH
T ss_pred CCCCEEeCCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 99999999984 689999999999999999999999999985
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=357.56 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=217.8
Q ss_pred ceEEEEEEEEEecCCCCc--eEEEEEEEC-CeeeeeccCCCCCceeee-eeeecCCCCcccchhHHHHHHHhHHhHhhhh
Q 016156 44 AKVKSVKARQIIDSRGNP--TVEVDLITD-DLFRSAVPSGASTGIYEA-LELRDGDKSVYGGKGVLNAVKNINDILGPKL 119 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~--tv~V~V~td-G~~~~~~~s~~~~G~~Ea-~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~L 119 (394)
|+|++|+++.+..+.+++ +|+|+|+|+ |++ |+||+ .. .+++.+++...|++ |+|.|
T Consensus 3 MkI~~i~~~~~~~~~~~~~~~v~V~v~td~G~~----------G~Ge~~~~---------~g~~~~~~~~~i~~-l~p~l 62 (403)
T 2ox4_A 3 LKITKIEIFHVHTRPQSGQRPILVKVSTDEGIY----------GLGEAGIA---------YGVGGSAAAGILKD-YAALL 62 (403)
T ss_dssp CCEEEEEEEEECCCTTTCCCCEEEEEEETTSCE----------EEEEESCS---------SSSCHHHHHHHHHH-HHHHH
T ss_pred CeEEEEEEEEecCCCCCCccceEEEEEeCCCCE----------EEEeecCC---------CCCchHHHHHHHHH-HHHHc
Confidence 899999999997766655 679999999 986 99997 42 12234556667777 99999
Q ss_pred cCCCCCCHHHHHHHHHHhc-CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEe-ec-C-
Q 016156 120 VGVDIRDQAEVDAIMLEID-GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNV-IN-G- 195 (394)
Q Consensus 120 iG~dp~~~e~Id~~l~~~~-~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~-i~-g- 195 (394)
+|+||.++++||+.|.+.. .+.++++++.+|++|||+||||++||.+|+|||+||| |..++++| +|++ ++ |
T Consensus 63 ~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~vp--~y~~~i~~g~ 137 (403)
T 2ox4_A 63 IGEDPFNTEAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLG---GKNREDLR--VYASQLQFGW 137 (403)
T ss_dssp TTCCTTCHHHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSSEE--EEEECGGGCS
T ss_pred CCCCHHHHHHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCcee--eeEeeccCCc
Confidence 9999999999999998743 1224566778999999999999999999999999999 76555555 5776 66 4
Q ss_pred CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhc------CCCCcccCCCCCCCC--CCCChHHHHHHH
Q 016156 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY------GQDACNVGDEGGFAP--NVQDNREGLVLL 267 (394)
Q Consensus 196 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~------G~~~~~vg~~g~~~~--~~~~~~~~l~~v 267 (394)
+.|+++.++.+++ .+++.++..+||+.+| .|. |.. -.+..|++.+ +++.+.+++++|
T Consensus 138 ~~~~~~~~~~e~~---------~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~--~~s~~~g~~~~~~~~~~~e~v~av 202 (403)
T 2ox4_A 138 GKERKSKGRKEEY---------AEEALKAVAEGYDAVK----VDVLAHDRNGSR--EGVFLEGPLPSETIKIGVERVEAI 202 (403)
T ss_dssp SSSCCCCCSHHHH---------HHHHHHHHHTTCSEEE----ECCSSSCTTSCC--TTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHH---------HHHHHHHHHcCCCEEE----EeccccCCcccc--ccCcccCCCchHHHHHHHHHHHHH
Confidence 5677666566553 5677778888899888 342 211 0111233221 122234556666
Q ss_pred HHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHH
Q 016156 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347 (394)
Q Consensus 268 ~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~ 347 (394)
|+++ | +|+.|++|+ |+.| +.+++++++. .+++|+|.|||||++++|+++|+
T Consensus 203 r~av---G--~d~~l~vDa--------n~~~---------------~~~~ai~~~~-~l~~~~i~~iE~P~~~~d~~~~~ 253 (403)
T 2ox4_A 203 RNAV---G--PDVDIIVEN--------HGHT---------------DLVSAIQFAK-AIEEFNIFFYEEINTPLNPRLLK 253 (403)
T ss_dssp HHHH---C--TTSEEEEEC--------TTCS---------------CHHHHHHHHH-HHGGGCEEEEECCSCTTSTHHHH
T ss_pred HHHh---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHHhhCCCEEeCCCChhhHHHHH
Confidence 6655 3 489999999 5544 5678998755 59999999999999999999999
Q ss_pred HHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 348 SLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 348 ~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 254 ~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite 299 (403)
T 2ox4_A 254 EAKKKIDIPLASGERI-YSRWGFLPFLEDRSIDVIQPDLGTCGGFTE 299 (403)
T ss_dssp HHHHTCCSCEEECTTC-CHHHHHHHHHHTTCCSEECCCHHHHTHHHH
T ss_pred HHHHhCCCCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 9999999999999985 569999999999999999999999999985
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=351.52 Aligned_cols=282 Identities=17% Similarity=0.194 Sum_probs=214.4
Q ss_pred ceEEEEEEEEEec--CCCCc----eEEEEEEEC-CeeeeeccCCCCCceeee-eeeecCCCCcccchhHHHHHHHhHHhH
Q 016156 44 AKVKSVKARQIID--SRGNP----TVEVDLITD-DLFRSAVPSGASTGIYEA-LELRDGDKSVYGGKGVLNAVKNINDIL 115 (394)
Q Consensus 44 ~~I~~V~~r~v~~--~~g~~----tv~V~V~td-G~~~~~~~s~~~~G~~Ea-~~~~d~~~~~~~g~~~~~a~~~I~~~l 115 (394)
|+|++|+++.+.. ..+.| +++|+|+|+ |++ |+||+ .. .+.+.+.+...|++ |
T Consensus 3 MkI~~i~~~~~~~pl~~~~~~~~~~v~V~v~td~G~~----------G~Ge~~~~---------~g~~~~~~~~~i~~-l 62 (410)
T 2gl5_A 3 LKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLS----------GIGEVGLA---------YGAGAKAGVGIIRD-L 62 (410)
T ss_dssp CCEEEEEEEECCGGGTCGGGTTCCCEEEEEEETTSCE----------EEEEESCS---------SSTTHHHHHHHHHH-H
T ss_pred ceEEEEEEEEecccccccCcccccceEEEEEeCCCCE----------EEEeecCc---------CCCChHHHHHHHHH-H
Confidence 8999999999954 22223 679999999 986 99997 42 12234556667777 9
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhc-CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEe-e
Q 016156 116 GPKLVGVDIRDQAEVDAIMLEID-GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNV-I 193 (394)
Q Consensus 116 ~p~LiG~dp~~~e~Id~~l~~~~-~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~-i 193 (394)
+|.|+|+||.++++||+.|.+.. .+.++++++.+|++|||+||||++||.+|+|||+||| |..++++| +|++ +
T Consensus 63 ~p~liG~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~vp--~y~~~i 137 (410)
T 2gl5_A 63 APLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLG---GKTNEKLR--TYASQL 137 (410)
T ss_dssp GGGTTTSCTTCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---SCSCSSEE--EEEECG
T ss_pred HHHhCCCChHHHHHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCcee--EeEecc
Confidence 99999999999999999998742 1124556778999999999999999999999999999 76556655 5776 6
Q ss_pred c-C-CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC----------CCCCCC--CCCC
Q 016156 194 N-G-GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGD----------EGGFAP--NVQD 259 (394)
Q Consensus 194 ~-g-G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~----------~g~~~~--~~~~ 259 (394)
+ | +.|+++.++.+++ .+++.++..+||+.+| .|.... ...|. .||+.+ +++.
T Consensus 138 ~~g~~~~~~~~~~~~~~---------~~~a~~~~~~Gf~~vK----ik~~~~-~~~G~~~~~~~~~~~~GG~~~~~~~~~ 203 (410)
T 2gl5_A 138 QFGWGDKNHILVTPEEY---------AEAARAALDDGYDAIK----VDPLEI-DRNGDDCVFQNRNRNYSGLLLADQLKM 203 (410)
T ss_dssp GGCCTTCCSCCCSHHHH---------HHHHHHHHHTTCSEEE----ECSSSB-CTTSCBTTTSSCCGGGGSCCCHHHHHH
T ss_pred cCCccccccccCCHHHH---------HHHHHHHHHcCCCEEE----Eecccc-CCcccccccccccccccCccchhHHHH
Confidence 6 4 5566555555553 5677777778898888 332000 00111 233322 2233
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCC
Q 016156 260 NREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339 (394)
Q Consensus 260 ~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~ 339 (394)
+.+.++.||+++ | .|+.|++|+ |+.| +.+++++++.. +++|+|.|||||++
T Consensus 204 ~~e~v~avR~a~---G--~d~~l~vDa--------n~~~---------------~~~~ai~~~~~-l~~~~i~~iE~P~~ 254 (410)
T 2gl5_A 204 GEARIAAMREAM---G--DDADIIVEI--------HSLL---------------GTNSAIQFAKA-IEKYRIFLYEEPIH 254 (410)
T ss_dssp HHHHHHHHHHHH---C--SSSEEEEEC--------TTCS---------------CHHHHHHHHHH-HGGGCEEEEECSSC
T ss_pred HHHHHHHHHHhc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHHH-HHhcCCCeEECCCC
Confidence 455666666665 3 489999999 4544 56789987654 89999999999999
Q ss_pred CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 340 ~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|+++|++|++++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 255 ~~~~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 308 (410)
T 2gl5_A 255 PLNSDNMQKVSRSTTIPIATGERS-YTRWGYRELLEKQSIAVAQPDLCLCGGITE 308 (410)
T ss_dssp SSCHHHHHHHHHHCSSCEEECTTC-CTTHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred hhhHHHHHHHHhhCCCCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999999999999999985 579999999999999999999999999984
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=347.50 Aligned_cols=266 Identities=15% Similarity=0.167 Sum_probs=204.8
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+++.+- .+.| +.++.|+|+|| |++ |+||+.. .+++...+...
T Consensus 20 MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~----------G~Ge~~~---------~~~~~~~~~~~ 80 (388)
T 4h83_A 20 LTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGII----------GEAYTGD---------EHETMFDIDRI 80 (388)
T ss_dssp CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCE----------EEEEECC---------CCTTHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCE----------EEEEecC---------CcccHHHHHHH
Confidence 999999998872 2333 35799999999 986 9999732 23456677778
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCC-CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGT-PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~-~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
|++.|+|.|+|+||.+++++|+.|++.... .+.+.+..+|++|||+||||+.||.+|+|||+||| |. ++++|++.
T Consensus 81 i~~~lap~LiG~dp~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLG---g~-~~~~~~y~ 156 (388)
T 4h83_A 81 IHEELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWG---GY-RNELPMIA 156 (388)
T ss_dssp HHHTTHHHHTTSBTTCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CS-CSEEEEEE
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcC---CC-cCceEEEe
Confidence 889999999999999999999999874322 22334567799999999999999999999999999 64 56777643
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
+. +.+.. + .....+++.+...+||+++| .|.| + .+.+++.++++.+|+
T Consensus 157 ~~----~~~~~---~---------~~~~~~~~~~~~~~G~~~~K----ikvg----------~--~~~~~d~~~v~avR~ 204 (388)
T 4h83_A 157 IG----GYYGE---P---------LGSIADEMHNYQELGLAGVK----FKVG----------G--LSAAEDAARITAARE 204 (388)
T ss_dssp EE----CCTTC---T---------TCSHHHHHHHHHHHTBSEEE----EECS----------S--SCHHHHHHHHHHHHH
T ss_pred ec----cccCC---C---------HHHHHHHHHHHHHcCCceEe----ecCC----------C--CCHHHHHHHHHHHHH
Confidence 22 21110 1 12345667777777888887 4532 1 223334556666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC-CCHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ-DDWSSWAS 348 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~-~D~~~~~~ 348 (394)
++ | +++.|++|+ |+.| +.++++++. +.+++|++.|||||+++ +|++++++
T Consensus 205 ~~---G--~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~~d~~~~~~ 255 (388)
T 4h83_A 205 AA---G--DDFIICIDA--------NQGY---------------KPAVAVDLS-RRIADLNIRWFEEPVEWHNDKRSMRD 255 (388)
T ss_dssp HH---C--SSSEEEEEC--------TTCB---------------CHHHHHHHH-HHTTTSCCCCEESCBCSTTHHHHHHH
T ss_pred hc---C--CCeEEEEec--------CcCC---------------CHHHHHHHH-HHhhhcCcceeecCcccccchHHHHH
Confidence 65 3 489999999 5655 567888864 45899999999999986 67999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 256 l~~~~~ipIa~dE~-~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~ 300 (388)
T 4h83_A 256 VRYQGSVPVCAGQT-EFSASGCRDLMETGAIDVCNFDSSWSGGPTA 300 (388)
T ss_dssp HHHHSSSCEEECTT-CSSHHHHHHHHHHTCCSEECCCGGGTTCHHH
T ss_pred HHhhcCCCccCCcc-ccChHhHHHHHHcCCCCeEeecceeCCCHHH
Confidence 99999999999997 5689999999999999999999999999984
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=349.19 Aligned_cols=281 Identities=19% Similarity=0.219 Sum_probs=210.8
Q ss_pred ceEEEEEEEEEecCCCCc-----eEEEEEEEC-CeeeeeccCCCCCceeee-eeeecCCCCcccchhHHHHHHHhHHhHh
Q 016156 44 AKVKSVKARQIIDSRGNP-----TVEVDLITD-DLFRSAVPSGASTGIYEA-LELRDGDKSVYGGKGVLNAVKNINDILG 116 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~-----tv~V~V~td-G~~~~~~~s~~~~G~~Ea-~~~~d~~~~~~~g~~~~~a~~~I~~~l~ 116 (394)
|+|++|+++.+..+...| +++|+|+|+ |++ |+||+ .. .+.+.+.+...|++ |+
T Consensus 4 MkI~~i~~~~~~~p~~~p~~~~~~v~V~v~td~G~~----------G~Ge~a~~---------~g~~~~~~~~~i~~-l~ 63 (407)
T 2o56_A 4 MKITSVDIIDVANDFASATSKWRPVVVKINTDEGIS----------GFGEVGLA---------YGVGASAGIGMAKD-LS 63 (407)
T ss_dssp CCEEEEEEEECCCCC-----CCCCEEEEEEETTSCE----------EEEEESCS---------SSSCHHHHHHHHHH-HH
T ss_pred CEEEEEEEEEeccccCCCcccceeEEEEEEeCCCCE----------EEEeeccC---------CCCchHHHHHHHHH-HH
Confidence 899999999997665555 679999999 886 99997 42 12234556667777 99
Q ss_pred hhhcCCCCCCHHHHHHHHHHhcC-CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEe-ec
Q 016156 117 PKLVGVDIRDQAEVDAIMLEIDG-TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNV-IN 194 (394)
Q Consensus 117 p~LiG~dp~~~e~Id~~l~~~~~-~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~-i~ 194 (394)
|.|+|+||.++++||+.|.+... +.++++++.+|++|||+||||++||.+|+|||+||| |..++++| +|++ ++
T Consensus 64 p~liG~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~vp--~y~~~i~ 138 (407)
T 2o56_A 64 AIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLG---GKSREKIR--TYASQLQ 138 (407)
T ss_dssp HHHTTSCTTCHHHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSSEE--EEEECGG
T ss_pred HHhCCCChHHHHHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcC---CCCCCeee--eeeeecc
Confidence 99999999999999999987421 114456678999999999999999999999999999 76556655 5665 54
Q ss_pred -C-CcCC--CCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhc------CCCCcccCCCCCCCC--CCCChHH
Q 016156 195 -G-GSHA--GNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY------GQDACNVGDEGGFAP--NVQDNRE 262 (394)
Q Consensus 195 -g-G~~~--~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~------G~~~~~vg~~g~~~~--~~~~~~~ 262 (394)
| +.|+ ++.++.++ ..+++.++..+||+.+| .|. |.. ..++.|++.+ +++.+.+
T Consensus 139 ~g~~~~~~~~~~~~~~~---------~~~~a~~~~~~Gf~~vK----ik~~~~~~~G~~--~~s~~~~~~~~~~~~~~~e 203 (407)
T 2o56_A 139 FGWGDGSDKDMLTEPEQ---------YAQAALTAVSEGYDAIK----VDTVAMDRHGNW--NQQNLNGPLTDKILRLGYD 203 (407)
T ss_dssp GCCSTTCTTCCCCSHHH---------HHHHHHHHHHTTCSEEE----ECCSSBCTTSCB--SCSCCCSSCCHHHHHHHHH
T ss_pred CCccccccccccCCHHH---------HHHHHHHHHHcCCCEEE----EcccccCCcCcc--ccCcccCCCchhHHHHHHH
Confidence 3 3333 22233444 25677777778888888 342 210 1112333322 1122345
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D 342 (394)
++++||+++ | .|+.|++|+ |+.| +.+++++++. .+++|+|.|||||++++|
T Consensus 204 ~v~avR~a~---G--~d~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~i~~iE~P~~~~~ 254 (407)
T 2o56_A 204 RMAAIRDAV---G--PDVDIIAEM--------HAFT---------------DTTSAIQFGR-MIEELGIFYYEEPVMPLN 254 (407)
T ss_dssp HHHHHHHHH---C--TTSEEEEEC--------TTCS---------------CHHHHHHHHH-HHGGGCCSCEECSSCSSS
T ss_pred HHHHHHHhc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHH-HHHhcCCCEEeCCCChhh
Confidence 555555555 3 489999999 5544 5678998655 599999999999999999
Q ss_pred HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 343 ~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|++++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 255 ~~~~~~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite 305 (407)
T 2o56_A 255 PAQMKQVADKVNIPLAAGERI-YWRWGYRPFLENGSLSVIQPDICTCGGITE 305 (407)
T ss_dssp HHHHHHHHHHCCSCEEECTTC-CHHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHHhCCCCEEeCCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999999999999985 579999999999999999999999999984
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=351.98 Aligned_cols=279 Identities=16% Similarity=0.224 Sum_probs=210.6
Q ss_pred hhcCCcceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHh
Q 016156 38 STASSSAKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILG 116 (394)
Q Consensus 38 ~~f~~~~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~ 116 (394)
.||...|||++|++..+ +.++.++.|+|+|| |++ |+||+.. .+ ...++...|++.|+
T Consensus 18 ~~~~~~mkIt~v~~~~~--~~~~~~v~V~v~td~G~~----------G~GE~~~---------~~-~~~~~~~~i~~~l~ 75 (425)
T 3vcn_A 18 LYFQSMLKIIDAKVIVT--CPGRNFVTLKITTEDGIT----------GVGDATL---------NG-RELSVVSFLQDHMV 75 (425)
T ss_dssp -----CCBEEEEEEEEE--CSSSCEEEEEEEETTSCE----------EEEECCC---------TT-CHHHHHHHHHHTTH
T ss_pred ccCCCCCEEEEEEEEEE--cCCCcEEEEEEEECCCCE----------EEEeccC---------CC-ChHHHHHHHHHHHH
Confidence 46766699999998665 33457899999999 986 9999732 11 12345566888899
Q ss_pred hhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCC
Q 016156 117 PKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGG 196 (394)
Q Consensus 117 p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG 196 (394)
|.|+|+||.+++++|+.|++. ..++++++..+|++|||+||||++||.+|+|||+||| |+.++++|++ .++++.
T Consensus 76 p~LiG~dp~~ie~i~~~~~~~-~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y--~~~~~~ 149 (425)
T 3vcn_A 76 PSLIGRDAHQIEDIWQFFYRG-SYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLG---GACRTGVTVY--GHANGE 149 (425)
T ss_dssp HHHTTCBTTCHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTT---CCSSSSEEEE--EEEEES
T ss_pred HHhCCCChhhHHHHHHHHHhh-cccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CCCCCeeeEE--EeCCCC
Confidence 999999999999999999874 2234445667899999999999999999999999999 7777888874 433221
Q ss_pred cCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCc--ccC--CCC-CCCC------C---------
Q 016156 197 SHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDAC--NVG--DEG-GFAP------N--------- 256 (394)
Q Consensus 197 ~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~--~vg--~~g-~~~~------~--------- 256 (394)
+. +...+++.+...+||+++| .|.|.... ..| ..+ .+.+ .
T Consensus 150 -------~~---------e~~~~~a~~~~~~Gf~~iK----lKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~ 209 (425)
T 3vcn_A 150 -------TI---------EDTIAEAVKYKAMGYKAIR----LQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKY 209 (425)
T ss_dssp -------SH---------HHHHHHHHHHHHTTCSEEE----EEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHH
T ss_pred -------CH---------HHHHHHHHHHHHcCCCEEE----EeecCccccccccccccccccCcccccccccccccchhH
Confidence 11 2235677777778899998 66552100 000 000 0011 1
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeC
Q 016156 257 VQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIED 336 (394)
Q Consensus 257 ~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEd 336 (394)
++.+.+++++||+++ | +|+.|++|+ |+.| +.++++++ .+.++++++.||||
T Consensus 210 ~~~d~e~v~avR~a~---G--~d~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEq 260 (425)
T 3vcn_A 210 LNSVPKLFERAREVL---G--WDVHLLHDV--------HHRL---------------TPIEAARL-GKDLEPYRLFWLED 260 (425)
T ss_dssp HTTTHHHHHHHHHHH---C--SSSEEEEEC--------TTCC---------------CHHHHHHH-HHHHGGGCCSEEEC
T ss_pred HHHHHHHHHHHHHHc---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEEC
Confidence 234567777777777 3 489999999 5655 56788875 45589999999999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 337 PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 337 Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++|++++++|++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 261 P~~~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 317 (425)
T 3vcn_A 261 SVPAENQAGFRLIRQHTTTPLAVGEI-FAHVWDAKQLIEEQLIDYLRATVLHAGGITN 317 (425)
T ss_dssp CSCCSSTTHHHHHHHHCCSCEEECTT-CCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred CCChhhHHHHHHHHhcCCCCEEeCCC-cCCHHHHHHHHHcCCCCeEecChhhcCCHHH
Confidence 99999999999999999999999997 5679999999999999999999999999974
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=352.39 Aligned_cols=279 Identities=18% Similarity=0.211 Sum_probs=207.1
Q ss_pred hhcCC---cceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHH
Q 016156 38 STASS---SAKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNIND 113 (394)
Q Consensus 38 ~~f~~---~~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~ 113 (394)
-||+. .|||++|++..+ ...+..++.|+|+|| |++ |+||+.. .+. ..++...|++
T Consensus 18 ~~~~~~~~~mkIt~v~~~~~-~~~~~~~v~V~v~td~Gi~----------G~GE~~~-------~~~---~~~~~~~i~~ 76 (422)
T 3tji_A 18 LYFQSMMTPVIIKNIECFIT-RPDRHNLVTVRVTTEQGIT----------GHGCATF-------QQR---PLAVKTLVDE 76 (422)
T ss_dssp ------CCCCBEEEEEEEEE-CSSSSCEEEEEEEETTSCC----------EEEECCC-------TTS---HHHHHHHHHH
T ss_pred eeccccCCCcEEEEEEEEEE-cCCCccEEEEEEEECCCCE----------EEEeccC-------CCC---HHHHHHHHHH
Confidence 35665 399999998765 322336899999999 986 9999732 122 2345566788
Q ss_pred hHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEee
Q 016156 114 ILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVI 193 (394)
Q Consensus 114 ~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i 193 (394)
.|+|.|+|+||.+++++|+.|.+. ..++++++..+|++|||+||||++||.+|+|||+||| |..++++|+ |+++
T Consensus 77 ~l~p~LiG~dp~~ie~~~~~l~~~-~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~~ 150 (422)
T 3tji_A 77 YLQPLMIGRDANNIEDLWQMMNVN-AYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFG---GKSRDAIPA--YSHA 150 (422)
T ss_dssp THHHHHTTSBTTCHHHHHHHHHHT-TSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSCEEE--EEEE
T ss_pred HHHHHhCCCCcccHHHHHHHHHHh-hhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCCCCeEEE--EEEe
Confidence 899999999999999999999873 2334455667899999999999999999999999999 777778876 4443
Q ss_pred cCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccc----CCCCCCCCC--------CCChH
Q 016156 194 NGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNV----GDEGGFAPN--------VQDNR 261 (394)
Q Consensus 194 ~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~v----g~~g~~~~~--------~~~~~ 261 (394)
++. +.+ ...+++.+...+||+++| .|.|...... ..++. .+. ++.+.
T Consensus 151 ~~~-------~~e---------~~~~~a~~~~~~G~~~iK----lKvG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~ 209 (422)
T 3tji_A 151 SGE-------TLE---------ALFASVDALIAQGYRHIR----CQLGFYGGTPSALHAPDNP-TPGAWFDQQEYMSNTV 209 (422)
T ss_dssp EES-------SHH---------HHHHHHHHHHHTTCSEEE----EEESCCCBCGGGSCCCSSC-CSSEECCHHHHHHHHH
T ss_pred CCC-------CHH---------HHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccc-cccccccchhHHHHHH
Confidence 321 112 235667777778899988 6655321000 00000 010 12234
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 262 EGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 262 ~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
+++++||+++ | +++.|++|+ |+.| +.++++++ .+.++++++.|||||++++
T Consensus 210 e~v~avR~av---G--~d~~L~vDa--------N~~~---------------~~~~A~~~-~~~Le~~~i~~iEqP~~~~ 260 (422)
T 3tji_A 210 EMFHALREKY---G--WKLHILHDV--------HERL---------------FPQQAVQL-AKQLEPFQPYFIEDILPPQ 260 (422)
T ss_dssp HHHHHHHHHH---C--SSSEEEEEC--------TTCS---------------CHHHHHHH-HHHHGGGCCSEEECCSCGG
T ss_pred HHHHHHHHHc---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHHhhCCCeEECCCChh
Confidence 4556666655 3 489999999 5655 56788875 4558999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++|++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 261 d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~ 312 (422)
T 3tji_A 261 QSAWLEQVRQQSCVPLALGEL-FNNPAEWHDLIVNRRIDFIRCHVSQIGGITP 312 (422)
T ss_dssp GGGGHHHHHHHCCCCEEECTT-CCSGGGTHHHHHTTCCSEECCCGGGGTSHHH
T ss_pred hHHHHHHHHhhCCCCEEEeCC-cCCHHHHHHHHhcCCCCEEecCccccCCHHH
Confidence 999999999999999999997 5679999999999999999999999999984
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=342.77 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=200.9
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+++.+ ..+.| +..|.|+|+|+ |++ |+||+.. . ......
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~----------G~GE~~~----------~---~~~~~~ 57 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTV----------GWGECLG----------P---ARPNAA 57 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECS----------C---HHHHHH
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCE----------EEEEecC----------C---cchHHH
Confidence 89999998876 23444 35799999999 986 9999732 1 112234
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
+.+.++|.|+|+||.+++++|+.|++.....+..++..+|++|||+||||+.||.+|+|||+||| |+.++++|+ |
T Consensus 58 ~~~~~~~~liG~d~~~~e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLG---g~~~~~~~~--y 132 (378)
T 4hpn_A 58 VVQAYSGWLIGQDPRQTEKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLG---GRWRESVRA--Y 132 (378)
T ss_dssp HHHHHHTTTTTSCTTCHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEEEE--E
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccC---CccccCcce--e
Confidence 66789999999999999999999987433333334566799999999999999999999999999 777777776 4
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
++ ++..... .++ ..+..+++.+...+||+.+| .|.| .+.+.+.++++.+|++
T Consensus 133 ~~--~~~~~~~---~~~------~~~~~~~~~~~~~~Gf~~~K----~k~g-------------~~~~~di~~v~avr~~ 184 (378)
T 4hpn_A 133 AT--GSFKRDN---VDR------VSDNASEMAERRAEGFHACK----IKIG-------------FGVEEDLRVIAAVREA 184 (378)
T ss_dssp EE--CCCBCTT---CCH------HHHHHHHHHHHHHTTCSEEE----EECC-------------SCHHHHHHHHHHHHHH
T ss_pred ee--ecccccc---chh------HHHHHHHHHHHHHhccceec----cccc-------------CChHHHHHHHHHHHHh
Confidence 43 2221111 111 01234555556666777766 4422 1233334556666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.| |.++++++. +.+++|+|.|||||++++|++++++|+
T Consensus 185 ~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~ 235 (378)
T 4hpn_A 185 I---G--PDMRLMIDA--------NHGY---------------TVTEAITLG-DRAAGFGIDWFEEPVVPEQLDAYARVR 235 (378)
T ss_dssp H---T--TTSEEEEEC--------TTCC---------------CHHHHHHHH-HHHGGGCCSCEECCSCTTCHHHHHHHH
T ss_pred c---C--CcEEEEEec--------Cccc---------------CHHHHHHHH-hhhhhcccchhhcCCCccchhhhHHHH
Confidence 5 3 489999999 5655 567888864 458999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. +.+.++++++++.+++|++|+|++++||||+
T Consensus 236 ~~~~ipIa~dE~-~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~ 278 (378)
T 4hpn_A 236 AGQPIPVAGGET-WHGRYGMWQALSAGAVDILQPDLCGCGGFSE 278 (378)
T ss_dssp HHSSSCEEECTT-CCHHHHHHHHHHTTCCSEECCBTTTTTHHHH
T ss_pred hhCCceeeCCcC-ccchHhHHHHHHcCCCCEEeeCCeeCCChhH
Confidence 999999999997 5679999999999999999999999999984
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=343.86 Aligned_cols=277 Identities=19% Similarity=0.194 Sum_probs=211.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhh-hhcC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGP-KLVG 121 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p-~LiG 121 (394)
|+|++|+++.+. +.+.++++|+|+|+ |++ |+||+.. .| |++..++...|++ |+| .|+|
T Consensus 3 mkI~~i~~~~v~-~~~~~~v~V~v~td~G~~----------G~GE~~~-------~~-g~~~~~~~~~i~~-l~~~~l~G 62 (392)
T 2poz_A 3 LKITGVNIYLLK-SGRLHPVLVEISTDEGIT----------GAGEAGI-------AY-GVGGTAAAGMIKD-LSERFLIG 62 (392)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEETTSCC----------EEEEESC-------SS-SSCHHHHHHHHHH-HHHHHTTT
T ss_pred CeEEEEEEEEEe-cCCccEEEEEEEECCCCE----------EEEeecC-------Cc-CCchHHHHHHHHH-hhHhhhcC
Confidence 899999999997 55556799999999 875 9999843 23 5567777777875 999 9999
Q ss_pred CCCCCHHHHHHHHHHh-cCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCC
Q 016156 122 VDIRDQAEVDAIMLEI-DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAG 200 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~-~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~ 200 (394)
+||.++++||+.|.+. ..+.++++++.+|++|||+||||++||.+|+|||+||| |..++++ |+|++ | |..
T Consensus 63 ~d~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLG---g~~~~~v--~~y~~---g-~~~ 133 (392)
T 2poz_A 63 KDPSRIEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFG---GKIRDRV--RAYAN---G-WYG 133 (392)
T ss_dssp CCTTCHHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEE--EEEEC---S-CCT
T ss_pred CChhHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcC---CCccCce--EEEEe---c-ccc
Confidence 9999999999999874 33335556778999999999999999999999999999 7655554 45664 2 222
Q ss_pred CCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCC-CCCC------CCCCChHHHHHHHHHHHHH
Q 016156 201 NNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDE-GGFA------PNVQDNREGLVLLTDAIEK 273 (394)
Q Consensus 201 ~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~-g~~~------~~~~~~~~~l~~v~~Av~~ 273 (394)
+..+.++ ..+++.++..+||+.+| .|.|... .+.. +++. .+.+.+.+.+++||+++
T Consensus 134 ~~~~~~~---------~~~~a~~~~~~Gf~~vK----ik~g~~~--~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~-- 196 (392)
T 2poz_A 134 AADTPDE---------FARAVERPLKEGYGALK----FYPLAQR--VGSALQHVTRRSMSAEAIELAYRRVKAVRDAA-- 196 (392)
T ss_dssp TCCSHHH---------HHHHTHHHHHTTCSEEE----ECCCCEE--ETTEEECCBTTBCCHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCHHH---------HHHHHHHHHHcCCCEEE----Eeccccc--ccccccccccCCcchhhHHHHHHHHHHHHHhc--
Confidence 1123333 25667777777888887 4433000 0000 0111 11223345566666655
Q ss_pred cCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc
Q 016156 274 AGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV 353 (394)
Q Consensus 274 ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~ 353 (394)
| +|+.|++|+ |+.| +.+++++++.. +++|++.|||||++++|+++|++|++++
T Consensus 197 -G--~d~~l~vD~--------n~~~---------------~~~~a~~~~~~-l~~~~i~~iE~P~~~~~~~~~~~l~~~~ 249 (392)
T 2poz_A 197 -G--PEIELMVDL--------SGGL---------------TTDETIRFCRK-IGELDICFVEEPCDPFDNGALKVISEQI 249 (392)
T ss_dssp -C--TTSEEEEEC--------TTCS---------------CHHHHHHHHHH-HGGGCEEEEECCSCTTCHHHHHHHHHHC
T ss_pred -C--CCCEEEEEC--------CCCC---------------CHHHHHHHHHH-HHhcCCCEEECCCCcccHHHHHHHHhhC
Confidence 3 489999999 4544 56789987554 8999999999999999999999999999
Q ss_pred CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 354 DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 354 ~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 250 ~ipIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 289 (392)
T 2poz_A 250 PLPIAVGERV-YTRFGFRKIFELQACGIIQPDIGTAGGLME 289 (392)
T ss_dssp SSCEEECTTC-CHHHHHHHHHTTTCCSEECCCTTTSSCHHH
T ss_pred CCCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 9999999985 569999999999999999999999999984
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=344.60 Aligned_cols=274 Identities=16% Similarity=0.188 Sum_probs=206.7
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|++..+ ...+..++.|+|+|| |++ |+||+.. .+. ..++...|++.|+|.|+|+
T Consensus 6 mkIt~v~~~~~-~~~~~~~~~V~v~td~G~~----------G~GE~~~-------~~~---~~~~~~~i~~~l~p~liG~ 64 (401)
T 3sbf_A 6 TIISDIHCIIT-KPDRHNLITVVVETNEGVT----------GFGCATF-------QQR---PLAVKTMVDEYLKPILIGK 64 (401)
T ss_dssp CBEEEEEEEEE-CSSSSCEEEEEEEETTSCE----------EEEECCC-------TTS---HHHHHHHHHHTHHHHHTTS
T ss_pred eEEEEEEEEEE-cCCCceEEEEEEEeCCCCE----------EEEcccc-------CCC---HHHHHHHHHHHHHHHHcCC
Confidence 99999998766 322336899999999 986 9999732 122 2345566788899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|.+. ..++++++..+|++|||+||||++||.+|+|||+||| |..++++|+ |+++++.
T Consensus 65 d~~~~e~~~~~~~~~-~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~~~~~------ 132 (401)
T 3sbf_A 65 NANNIEDLWQMMMVN-AYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFG---GKSRDAIPV--YTHATSD------ 132 (401)
T ss_dssp BTTCHHHHHHHHHHT-TSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHT---CCSSSSEEE--EEEEEES------
T ss_pred ChhhHHHHHHHHHHh-cccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhC---CCcCCeeeE--EEeCCCC------
Confidence 999999999999873 2234445667899999999999999999999999999 777788876 4443321
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccC--------CCCC-CCC--CCCChHHHHHHHHHHH
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVG--------DEGG-FAP--NVQDNREGLVLLTDAI 271 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg--------~~g~-~~~--~~~~~~~~l~~v~~Av 271 (394)
+. +...+++.+...+||+++| .|.|....... ..|. +.. .++.+.+++++||+++
T Consensus 133 -~~---------e~~~~~a~~~~~~G~~~~K----~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~ 198 (401)
T 3sbf_A 133 -TM---------EGIYDLVEGFLEKGYKHIR----CQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKY 198 (401)
T ss_dssp -SH---------HHHHHHHHHHHHTTCCEEE----EEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHH
T ss_pred -CH---------HHHHHHHHHHHHcCCCEEE----EeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHc
Confidence 11 2235667777778899888 66553210000 0000 000 0122345566666665
Q ss_pred HHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHh
Q 016156 272 EKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQS 351 (394)
Q Consensus 272 ~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~ 351 (394)
| +++.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|++
T Consensus 199 ---G--~d~~l~vDa--------n~~~---------------~~~~A~~~-~~~L~~~~i~~iEqP~~~~~~~~~~~l~~ 249 (401)
T 3sbf_A 199 ---G--NQFHILHDV--------HERL---------------FPNQAIQF-AKEVEQYKPYFIEDILPPNQTEWLDNIRS 249 (401)
T ss_dssp ---T--TSSEEEEEC--------TTCS---------------CHHHHHHH-HHHHGGGCCSCEECSSCTTCGGGHHHHHT
T ss_pred ---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEECCCChhHHHHHHHHHh
Confidence 3 489999999 5655 56788875 45589999999999999999999999999
Q ss_pred hcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 352 SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 352 ~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 250 ~~~iPIa~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~ 291 (401)
T 3sbf_A 250 QSSVSLGLGEL-FNNPEEWKSLIANRRIDFIRCHVSQIGGITP 291 (401)
T ss_dssp TCCCCEEECTT-CCSHHHHHHHHHTTCCSEECCCGGGGTSHHH
T ss_pred hCCCCEEeCCc-cCCHHHHHHHHhcCCCCEEecCccccCCHHH
Confidence 99999999997 5689999999999999999999999999974
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=341.56 Aligned_cols=265 Identities=20% Similarity=0.207 Sum_probs=204.7
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.+- .+.| +..+.|+|+|+ |++ |+||+.... .++|++++.+++...
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~----------G~GE~~~~~---~~~y~~e~~~~~~~~ 71 (381)
T 3fcp_A 5 ATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGIC----------GIGEATTIG---GLSYGVESPEAISSA 71 (381)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCE----------EEEEEECST---TTTSSSCCHHHHHHH
T ss_pred cEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCE----------EEeccccCC---CCccCCCCHHHHHHH
Confidence 899999998882 1223 35799999999 986 999985432 135777888888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|++.. . + ..+|++|||+||||+.||.+|+|||+||| |..++++|++
T Consensus 72 i~~~l~p~l~G~d~~~~~~~~~~l~~~~--~--g--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~r~~v~~~-- 140 (381)
T 3fcp_A 72 ITHYLTPLLKGQPADNLNALTARMNGAI--K--G--NTFAKSAIETALLDAQGKALGLPVSALLG---GALQTALPVL-- 140 (381)
T ss_dssp HHHTHHHHHTTSBSSCHHHHHHHHHHHC--C--S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEEEBC--
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHh--c--C--cHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceeeE--
Confidence 9999999999999999999999998732 1 1 14799999999999999999999999999 7767788874
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
.+++.| +. ...++++.+... .||+++| .|.| ..+.+.+.+++++||+
T Consensus 141 ~t~~~~-------~~---------~~~~~~~~~~~~~~G~~~~K----iKvg------------~~~~~~d~~~v~avR~ 188 (381)
T 3fcp_A 141 WTLASG-------DT---------AKDIAEGEKLLAEGRHRAFK----LKIG------------ARELATDLRHTRAIVE 188 (381)
T ss_dssp EEECSS-------CH---------HHHHHHHHHHTC----CEEE----EECC------------SSCHHHHHHHHHHHHH
T ss_pred EEecCC-------Ch---------HHHHHHHHHHHHhCCCCEEE----EecC------------CCChHHHHHHHHHHHH
Confidence 333222 11 123455555555 4788887 5533 1122333455555555
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +++.|++|+ |+.| +.++++++ .+.+++|++.|||||++++|+++|++|
T Consensus 189 a~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~~~~~l 239 (381)
T 3fcp_A 189 AL---G--DRASIRVDV--------NQAW---------------DAATGAKG-CRELAAMGVDLIEQPVSAHDNAALVRL 239 (381)
T ss_dssp HT---C--TTCEEEEEC--------TTCB---------------CHHHHHHH-HHHHHHTTCSEEECCBCTTCHHHHHHH
T ss_pred Hc---C--CCCeEEEEC--------CCCC---------------CHHHHHHH-HHHHhhcCccceeCCCCcccHHHHHHH
Confidence 54 3 489999999 5655 46788875 455899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 240 ~~~~~ipIa~dE~-~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~ 283 (381)
T 3fcp_A 240 SQQIETAILADEA-VATAYDGYQLAQQGFTGAYALKIAKAGGPNS 283 (381)
T ss_dssp HHHSSSEEEESTT-CCSHHHHHHHHHTTCCSEEEECHHHHTSTTH
T ss_pred HHhCCCCEEECCC-cCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence 9999999999997 5679999999999999999999999999985
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=345.03 Aligned_cols=268 Identities=15% Similarity=0.157 Sum_probs=200.8
Q ss_pred hcCCc--ceEEEEEEEEEecCCC-------------------------------CceEEEEEEEC-CeeeeeccCCCCCc
Q 016156 39 TASSS--AKVKSVKARQIIDSRG-------------------------------NPTVEVDLITD-DLFRSAVPSGASTG 84 (394)
Q Consensus 39 ~f~~~--~~I~~V~~r~v~~~~g-------------------------------~~tv~V~V~td-G~~~~~~~s~~~~G 84 (394)
||++- .+|++|++..+..... ..+|.|||+|| |++ |
T Consensus 19 yFqsm~~~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~----------G 88 (412)
T 4h1z_A 19 YFQSMMSDRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAV----------G 88 (412)
T ss_dssp ------CCCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCE----------E
T ss_pred HHHhhccceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCE----------E
Confidence 67654 4899999987732111 12489999999 986 9
Q ss_pred eeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc-CCCCCCccchhhHHHHHHHHHHHhH
Q 016156 85 IYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID-GTPNKSKIGANAILGVSLSVCRAGA 163 (394)
Q Consensus 85 ~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~-~~~~~~~ig~~A~sAvdiAlwda~a 163 (394)
|||+.. ..+...+.+.|++.|+|.|+|+||.++++||+.|++.. .....+++..+|++|||+||||+.|
T Consensus 89 ~GE~~~----------~~~~~~~~~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~g 158 (412)
T 4h1z_A 89 WGETYG----------LVAPRATMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAG 158 (412)
T ss_dssp EEEEEC----------SSCHHHHHHHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCC----------CCCHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999742 12244566778899999999999999999999998632 1222345566799999999999999
Q ss_pred hhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016156 164 GAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQD 243 (394)
Q Consensus 164 k~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~ 243 (394)
|.+|+|||+||| |..++++|+ |++ +. .. +.. ....+.+.+...+||+.+| .|.|
T Consensus 159 K~~g~Pl~~LLG---G~~~~~v~~--y~s--~~-~~----~~~--------~~~~~~a~~~~~~G~~~~K----~k~g-- 212 (412)
T 4h1z_A 159 KLAGLPVCKLLG---GQRRDRIAA--YIS--GL-PE----DTR--------AKRAELAAAWQAKGFSSFK----FASP-- 212 (412)
T ss_dssp HHHTCBGGGGTT---CCCCSEEEE--EEC--CC-CC----SSH--------HHHHHHHHHHHHTTCCEEE----EEGG--
T ss_pred HHcCCCHHHhcC---CCCCceEEE--Eec--cC-CC----CcH--------HHHHHHHHHHHhcCcceec----cccc--
Confidence 999999999999 777777776 432 11 10 101 1124455555666777776 3422
Q ss_pred CcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHH
Q 016156 244 ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYK 323 (394)
Q Consensus 244 ~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~ 323 (394)
...+.+.++++++|+++ | +++.|++|+ |+.| |.++++++.
T Consensus 213 -----------~~~~~~~~~v~~vR~~~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~~- 252 (412)
T 4h1z_A 213 -----------VADDGVAKEMEILRERL---G--PAVRIACDM--------HWAH---------------TASEAVALI- 252 (412)
T ss_dssp -----------GCTTCHHHHHHHHHHHH---C--SSSEEEEEC--------CSCC---------------CHHHHHHHH-
T ss_pred -----------cchhhHHHHHHHHHhcc---C--CeEEEEecc--------ccCC---------------CHHHHHHHH-
Confidence 11234567788888777 3 489999999 5655 567888864
Q ss_pred HhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 324 EFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 324 ~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.+++|++.|||||++++|++++++|++++++||++||. +.+.++++++++.+++|++|+|+.+ ||||+
T Consensus 253 ~~l~~~~l~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~div~~d~~~-GGit~ 321 (412)
T 4h1z_A 253 KAMEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAVGEE-WRTVHDMVPRVARRALAIVQPEMGH-KGITQ 321 (412)
T ss_dssp HHHGGGCEEEEECCSCTTCHHHHHHHHHHCSSEEEECTT-CCSHHHHHHHHHTTCCSEECCCHHH-HHHHH
T ss_pred HhhcccccceecCCCCccchHHHHHHHhhcCCccccCCc-ccchHhHHHHHHcCCCCEEEecCCC-CChHH
Confidence 558999999999999999999999999999999999997 5679999999999999999999986 99974
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=346.90 Aligned_cols=281 Identities=15% Similarity=0.171 Sum_probs=205.9
Q ss_pred hhhcCCc---ceEEEEEEEEEecCCCCceEEEEEEEC--CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 37 ASTASSS---AKVKSVKARQIIDSRGNPTVEVDLITD--DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 37 a~~f~~~---~~I~~V~~r~v~~~~g~~tv~V~V~td--G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
--||+.. |||++|++..+ ...+...+.|+|+|| |++ |+||+.. .+. ..++...|
T Consensus 17 ~~~~~~~~~~mkIt~v~~~~~-~~~~~~~v~V~v~Td~~Gi~----------G~GE~~~-------~~~---~~~~~~~i 75 (440)
T 3t6c_A 17 NLYFQSMMSNLFITNVKTILT-APGGIDLVVVKIETNEPGLY----------GLGCATF-------TQR---IYAVQSAI 75 (440)
T ss_dssp ---------CCCEEEEEEEEE-CTTSSCEEEEEEEESSTTCE----------EEEECCC-------GGG---HHHHHHHH
T ss_pred chhhhhcCCCCEEEEEEEEEE-CCCCceEEEEEEEEcCCCCE----------EEEeecc-------CCC---HHHHHHHH
Confidence 3577764 89999998765 332336899999998 665 9999742 122 23455667
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
++.|+|.|+|+||.+++++|+.|++. ..++++++..+|++|||+||||++||.+|+|||+||| |..++++|+ |+
T Consensus 76 ~~~l~p~LiG~dp~~ie~i~~~~~~~-~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~ 149 (440)
T 3t6c_A 76 DEYLAPFLIGKDPARIEDIWQSAAVS-GYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLG---GKCRDGIAL--YV 149 (440)
T ss_dssp HTTHHHHHTTCCTTCHHHHHHHHHHT-TSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSSEEE--EE
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHh-cccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCeeEE--EE
Confidence 88899999999999999999999873 2334445667899999999999999999999999999 777788876 44
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCc-----------ccCCCCCCC------
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDAC-----------NVGDEGGFA------ 254 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~-----------~vg~~g~~~------ 254 (394)
.+++. +.+ ...+++.+...+||+++| .|.|.... ++..+.++.
T Consensus 150 ~~~~~-------~~e---------~~~~~a~~~~~~Gf~~~K----~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 209 (440)
T 3t6c_A 150 HTDGA-------DEV---------EVEDSARAKMEEGYQYIR----CQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPR 209 (440)
T ss_dssp EECCS-------SHH---------HHHHHHHHHHHTTCSEEE----ECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCS
T ss_pred ECCCC-------CHH---------HHHHHHHHHHHcCCCEEE----EeeccCCccccccccccccccccccccccccccc
Confidence 43221 122 235667777778899888 56552210 000000000
Q ss_pred ---CC--------CCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHH
Q 016156 255 ---PN--------VQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYK 323 (394)
Q Consensus 255 ---~~--------~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~ 323 (394)
+. ++.+.+++++||+++ | +++.|++|+ |+.| +.++++++ .
T Consensus 210 ~~~~~~~~~~~~~~~~d~~~v~avR~a~---G--~d~~L~vDa--------N~~~---------------~~~~A~~~-~ 260 (440)
T 3t6c_A 210 TKAPGIYFDPEAYAKSIPRLFDHLRNKL---G--FSVELLHDA--------HERI---------------TPINAIHM-A 260 (440)
T ss_dssp SCCSSEECCHHHHHHHHHHHHHHHHHHH---C--SSSEEEEEC--------TTCS---------------CHHHHHHH-H
T ss_pred cccccccccchhhHHHHHHHHHHHHHhc---C--CCCeEEEEC--------CCCC---------------CHHHHHHH-H
Confidence 10 122344556666665 3 489999999 5655 56788875 4
Q ss_pred HhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 324 EFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 324 ~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.+++|++.|||||++++|++++++|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 261 ~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 330 (440)
T 3t6c_A 261 KALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGEL-FVNVNEWKPLIDNKLIDYIRCHISSIGGITP 330 (440)
T ss_dssp HHTGGGCCSEEECSSCGGGGGGHHHHHHHCCSCEEECTT-CCSHHHHHHHHHTTCCSEECCCGGGGTSHHH
T ss_pred HHhhhcCCCEEECCCChhhHHHHHHHHhhcCCCEEeCcc-cCCHHHHHHHHHcCCccceeechhhhCCHHH
Confidence 558999999999999999999999999999999999997 5679999999999999999999999999984
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=346.10 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=207.9
Q ss_pred ceEEEEEEEEEec---C-CCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhh
Q 016156 44 AKVKSVKARQIID---S-RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPK 118 (394)
Q Consensus 44 ~~I~~V~~r~v~~---~-~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~ 118 (394)
|||++|+++.+-- + .++.++.|+|+|| |++ |+||+... .+. ..++...|++.|+|.
T Consensus 2 MkIt~i~~~~~~~p~~~~~~~~~v~V~v~Td~G~~----------G~GE~~~~------~~~---~~~v~~~i~~~l~p~ 62 (433)
T 3rcy_A 2 VKLRDLDIIVTAPPAPGWGGRYWILVKLTTDDGIT----------GWGECYAA------SVG---PEAMRAVIEDVFARH 62 (433)
T ss_dssp CCEEEEEEEEECCCTTCTTCSCEEEEEEEETTSCE----------EEEEECCC------SSC---HHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCccCCceEEEEEEEECCCCE----------EEEeccCC------CCC---HHHHHHHHHHHHHHH
Confidence 8999999988732 0 1457899999999 986 99996431 112 345556688889999
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCCCCCc-cchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEee---c
Q 016156 119 LVGVDIRDQAEVDAIMLEIDGTPNKSK-IGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVI---N 194 (394)
Q Consensus 119 LiG~dp~~~e~Id~~l~~~~~~~~~~~-ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i---~ 194 (394)
|+|+||.+++++|+.|++. ..++++. +..+|++|||+||||++||.+|+|||+||| |+.++++|+ |+.+ +
T Consensus 63 LiG~dp~~ie~~~~~l~~~-~~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~~~~~~ 136 (433)
T 3rcy_A 63 MEGENPENIELMFRRVYSS-GFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLG---GKMNPRIRA--YTYLYPLP 136 (433)
T ss_dssp TTTSCTTCHHHHHHHHHHT-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTT---CCSCSSEEE--EEECCCCT
T ss_pred hCCCCcccHHHHHHHHHhc-ccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCeEEE--EEEEcccC
Confidence 9999999999999999873 2233333 567899999999999999999999999999 777788876 5543 2
Q ss_pred CCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC---CCCChHHHHHHHHHHH
Q 016156 195 GGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAP---NVQDNREGLVLLTDAI 271 (394)
Q Consensus 195 gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~---~~~~~~~~l~~v~~Av 271 (394)
|.... ... .+++...+++.+...+||+++| .|.|..... ..|..+ +++.+.+++++||+++
T Consensus 137 g~~~~-~~~--------~~~e~~~~~a~~~~~~Gf~~iK----lk~g~~~~~---~~G~~~~~~~~~~d~e~v~avR~av 200 (433)
T 3rcy_A 137 HHPIT-PFW--------TSADMAAESAADCVARGYTAVK----FDPAGPYTL---RGGHMPAMTDISLSVEFCRKIRAAV 200 (433)
T ss_dssp TSCHH-HHT--------TCHHHHHHHHHHHHHTTCSEEE----ECCSCCCBT---TCCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred Ccccc-cCC--------CCHHHHHHHHHHHHHcCCCEEE----EcCCCCccc---ccCCCcchhhHHHHHHHHHHHHHHh
Confidence 21000 000 0112346677777777898888 554421110 011122 1223345566666665
Q ss_pred HHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHh
Q 016156 272 EKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQS 351 (394)
Q Consensus 272 ~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~ 351 (394)
| .|+.|++|+ |+.| +.++++++ .+.+++|++.|||||++++|++++++|++
T Consensus 201 ---G--~d~~L~vDa--------n~~~---------------t~~~A~~~-~~~Le~~~i~~iEeP~~~~~~~~~~~l~~ 251 (433)
T 3rcy_A 201 ---G--DKADLLFGT--------HGQF---------------TTAGAIRL-GQAIEPYSPLWYEEPVPPDNVGAMAQVAR 251 (433)
T ss_dssp ---T--TSSEEEECC--------CSCB---------------CHHHHHHH-HHHHGGGCCSEEECCSCTTCHHHHHHHHH
T ss_pred ---C--CCCeEEEeC--------CCCC---------------CHHHHHHH-HHHhhhcCCCEEECCCChhhHHHHHHHHh
Confidence 3 489999999 5655 56788875 45589999999999999999999999999
Q ss_pred hcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 352 SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 352 ~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 252 ~~~iPIa~dE~-~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~ 293 (433)
T 3rcy_A 252 AVRIPVATGER-LTTKAEFAPVLREGAAAILQPALGRAGGIWE 293 (433)
T ss_dssp HSSSCEEECTT-CCSHHHHHHHHHTTCCSEECCCHHHHTHHHH
T ss_pred ccCCCEEecCC-CCCHHHHHHHHHcCCCCEEEeCchhcCCHHH
Confidence 99999999997 5789999999999999999999999999984
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=341.51 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=206.5
Q ss_pred ceEEEEEEEEEecC----CCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhh
Q 016156 44 AKVKSVKARQIIDS----RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPK 118 (394)
Q Consensus 44 ~~I~~V~~r~v~~~----~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~ 118 (394)
|||++|+++.+--. .++..+.|+|+|| |++ |+||+... .+. ..++...|++.++|.
T Consensus 1 MkIt~i~~~~v~~plp~~~~~~~~~V~v~td~G~~----------G~GE~~~~------~~~---~~~~~~~i~~~l~p~ 61 (412)
T 4e4u_A 1 MKIVSLETHIVAVPPPHVGGMYWIFVKLKTDDGIE----------GVGEIYSA------TFG---PKAMAPIIDDVFERH 61 (412)
T ss_dssp CCEEEEEEEEEECCTTCTTCSEEEEEEEEETTSCE----------EEEEECCC------SSC---HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEccCCCccCCCceEEEEEEECCCCE----------EEEeecCC------CCC---HHHHHHHHHHHhHHH
Confidence 89999999888321 1357899999999 986 99997321 112 345556678889999
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCC-CCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCc
Q 016156 119 LVGVDIRDQAEVDAIMLEIDGTP-NKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS 197 (394)
Q Consensus 119 LiG~dp~~~e~Id~~l~~~~~~~-~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~ 197 (394)
|+|+||.+++++|+.|++.. .+ +.+++..+|++|||+||||++||.+|+|||+||| |..++++|++ +++..+.
T Consensus 62 LiG~dp~~~e~~~~~l~~~~-~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y--as~~~~~ 135 (412)
T 4e4u_A 62 LLNRDPHHVERLFRQAYSSG-FTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLG---GRIHERLRSY--TYLYPKN 135 (412)
T ss_dssp TTTSCTTCHHHHHHHHHHTT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTT---CCCCSSEEEE--EECCCBC
T ss_pred hCCCChhHHHHHHHHHHHhh-hhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcC---CCcCCeeEEE--EeccCCc
Confidence 99999999999999998632 22 2223346799999999999999999999999999 7677888764 4332110
Q ss_pred CCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC---CCChHHHHHHHHHHHHHc
Q 016156 198 HAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPN---VQDNREGLVLLTDAIEKA 274 (394)
Q Consensus 198 ~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~---~~~~~~~l~~v~~Av~~a 274 (394)
......+ .+++...+++.++..+||+++| .|.|... .+..| ..+. ++.+.+++++||+++
T Consensus 136 -~~~~~~~------~~~e~~~~~a~~~~~~G~~~iK----lK~g~~~--~~~~g-~~~~~~~~~~d~~~v~avR~a~--- 198 (412)
T 4e4u_A 136 -AKGEYDY------DDPDLAAECAAENVKLGFTAVK----FDPAGPY--TAYSG-HQLSLEVLDRCELFCRRVREAV--- 198 (412)
T ss_dssp -TTSCBCS------SCHHHHHHHHHHHHHHTCSEEE----ECCSCCC--BTTCC-BCCCHHHHHHHHHHHHHHHHHH---
T ss_pred -ccccccC------CCHHHHHHHHHHHHHcCCCEEE----ECCCCCC--ccccc-cccchhhHHHHHHHHHHHHHHh---
Confidence 0000000 0112345667777778898888 5544210 01111 1121 223345555555555
Q ss_pred CCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC
Q 016156 275 GYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD 354 (394)
Q Consensus 275 g~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~ 354 (394)
| +|+.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|+++++
T Consensus 199 G--~d~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~ 252 (412)
T 4e4u_A 199 G--SKADLLFGT--------HGQM---------------VPSSAIRL-AKRLEKYDPLWFEEPVPPGQEEAIAQVAKHTS 252 (412)
T ss_dssp T--TSSEEEECC--------CSCB---------------CHHHHHHH-HHHHGGGCCSEEECCSCSSCHHHHHHHHHTCS
T ss_pred C--CCCeEEEEC--------CCCC---------------CHHHHHHH-HHHhhhcCCcEEECCCChhhHHHHHHHHhhCC
Confidence 3 489999999 5655 56788875 45599999999999999999999999999999
Q ss_pred CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 355 IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 355 i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 253 iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 291 (412)
T 4e4u_A 253 IPIATGER-LTTKYEFHKLLQAGGASILQLNVARVGGLLE 291 (412)
T ss_dssp SCEEECTT-CCHHHHHHHHHHTTCCSEECCCTTTTTSHHH
T ss_pred CCEEecCc-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 99999997 5679999999999999999999999999984
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=340.16 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=208.2
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.+ ..+.| +..+.|+|+|| |++ |+||+.... .++|++++.+.+...
T Consensus 6 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~---~~~y~~e~~~~~~~~ 72 (382)
T 3dgb_A 6 SAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIE----------GLGESTTIG---GLAYGNESPDSIKTN 72 (382)
T ss_dssp TBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEECST---TTTSSSCCHHHHHHH
T ss_pred CeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCE----------EEEecccCC---CCccCCCCHHHHHHH
Confidence 44999998877 23444 35799999999 986 999986432 135777888888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|++.. . + ..+|++|||+||||+.||.+|+|||+||| |..++++|++
T Consensus 73 i~~~l~p~liG~d~~~~~~~~~~l~~~~--~--g--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~r~~v~~~-- 141 (382)
T 3dgb_A 73 IDRFVAPLLIGQDASNINAAMLRLEQSI--R--G--NTFAKSGIESALLDAQGKRLGLPVSELLG---GRVRDALPVA-- 141 (382)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHC--C--S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEEEBC--
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHh--c--C--chHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCeeeEE--
Confidence 9999999999999999999999998742 1 1 14799999999999999999999999999 7777888874
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
.+++.| +. ...++++.+... .||+++| .|.| ..+.+.+.+++++||+
T Consensus 142 ~t~~~~-------~~---------~~~~~~~~~~~~~~G~~~~K----iKvg------------~~~~~~d~~~v~avR~ 189 (382)
T 3dgb_A 142 WTLASG-------DT---------AKDIAEAQKMLDLRRHRIFK----LKIG------------AGEVDRDLAHVIAIKK 189 (382)
T ss_dssp EEECSS-------CH---------HHHHHHHHHHHHTTSCSEEE----EECC------------SSCHHHHHHHHHHHHH
T ss_pred EEecCC-------Ch---------HHHHHHHHHHHHhCCCCEEE----EeeC------------CCCHHHHHHHHHHHHH
Confidence 333222 11 123456666655 3688777 5533 1222334566666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +++.|++|+ |+.| +.++++++ .+.+++|++.|||||++++|+++|++|
T Consensus 190 a~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l 240 (382)
T 3dgb_A 190 AL---G--DSASVRVDV--------NQAW---------------DEAVALRA-CRILGGNGIDLIEQPISRNNRAGMVRL 240 (382)
T ss_dssp HH---G--GGSEEEEEC--------TTCB---------------CHHHHHHH-HHHHHTTTCCCEECCBCTTCHHHHHHH
T ss_pred Hc---C--CCCeEEEeC--------CCCC---------------CHHHHHHH-HHHHhhcCcCeeeCCCCccCHHHHHHH
Confidence 66 3 379999999 5655 46788875 455899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 241 ~~~~~ipIa~dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 284 (382)
T 3dgb_A 241 NASSPAPIMADES-IECVEDAFNLAREGAASVFALKIAKNGGPRA 284 (382)
T ss_dssp HHHCSSCEEESTT-CSSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHhCCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence 9999999999997 5679999999999999999999999999984
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=344.78 Aligned_cols=274 Identities=16% Similarity=0.234 Sum_probs=206.7
Q ss_pred cceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 43 SAKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 43 ~~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
.|||++|++..+ +.++.++.|+|+|| |++ |+||+.. .+. ..++...|++.|+|.|+|
T Consensus 22 ~mkIt~v~~~~~--~~~~~~v~V~v~td~Gi~----------G~GE~~~-------~~~---~~~~~~~i~~~l~p~LiG 79 (424)
T 3v3w_A 22 SMKIVDAKVIVT--CPGRNFVTLKIVTDQGIY----------GIGDATL-------NGR---EKSVVSYLEDYLIPVLIG 79 (424)
T ss_dssp -CCEEEEEEEEE--CSSSCEEEEEEEETTSCE----------EEEECCC-------TTC---HHHHHHHHHHTHHHHHTT
T ss_pred CCEEEEEEEEEE--cCCCCEEEEEEEECCCCE----------EEEeccC-------CCC---hHHHHHHHHHHHHHHhcC
Confidence 399999998655 33457899999999 986 9999732 111 234556688889999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.+++++|+.|++. ..++++++..+|++|||+||||++||.+|+|||+||| |+.++++|++ .++++.
T Consensus 80 ~dp~~ie~i~~~~~~~-~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y--~~~~~~----- 148 (424)
T 3v3w_A 80 RDPQQIEDIWQFFYRG-AYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLG---GKSRERILSY--THANGK----- 148 (424)
T ss_dssp SCTTCHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHT---CCSCSSEEEE--EEEEES-----
T ss_pred CChhhHHHHHHHHHhc-cccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CcCCCceeEE--EeCCCC-----
Confidence 9999999999999874 2234445667899999999999999999999999999 7777888874 433221
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC--cccCCC---CCCC------CC---------CCChH
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDA--CNVGDE---GGFA------PN---------VQDNR 261 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~--~~vg~~---g~~~------~~---------~~~~~ 261 (394)
+. +...+++.+...+||+++| .|.|... ...|.. ..+. |. ++.+.
T Consensus 149 --~~---------e~~~~~a~~~~~~Gf~~iK----lKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~ 213 (424)
T 3v3w_A 149 --DL---------DSTLEAVRKAKDKGYKAIR----VQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIP 213 (424)
T ss_dssp --SH---------HHHHHHHHHHHHTTCSEEE----EEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHH
T ss_pred --CH---------HHHHHHHHHHHHcCCCEEE----EeccCccccccccccccccccccccccccccccccchhHHHHHH
Confidence 11 2235677777778899998 6655210 000000 0001 11 12234
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 262 EGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 262 ~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
+++++||+++ | +|+.|++|+ |+.| +.++++++ .+.++++++.|||||++++
T Consensus 214 e~v~avR~av---G--~d~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEqP~~~~ 264 (424)
T 3v3w_A 214 DVFAAVRKEF---G--PDIHLLHDV--------HHRL---------------TPIEAARL-GKALEPYHLFWMEDAVPAE 264 (424)
T ss_dssp HHHHHHHHHH---C--SSSEEEEEC--------TTCC---------------CHHHHHHH-HHHHGGGCCSEEECCSCCS
T ss_pred HHHHHHHHHc---C--CCCcEEEeC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEECCCChH
Confidence 4556666655 3 489999999 5655 56788875 4558999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++|++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 265 d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~ 316 (424)
T 3v3w_A 265 NQESFKLIRQHTTTPLAVGEV-FNSIHDCRELIQNQWIDYIRTTIVHAGGISQ 316 (424)
T ss_dssp STTHHHHHHHHCCSCEEECTT-CCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred hHHHHHHHHhhCCCCEEEccC-cCCHHHHHHHHHcCCCCeEeecchhcCCHHH
Confidence 999999999999999999997 4679999999999999999999999999974
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.40 Aligned_cols=272 Identities=16% Similarity=0.194 Sum_probs=206.5
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|++..+ +.++.++.|+|+|| |++ |+||+.. .+. ..++...|++.|+|.|+|+
T Consensus 17 mkIt~v~~~~~--~~~~~~~~V~v~td~G~~----------G~GE~~~-------~~~---~~~~~~~i~~~l~p~LiG~ 74 (418)
T 3r4e_A 17 MKITAARVIIT--CPGRNFVTLKIETDQGVY----------GIGDATL-------NGR---ELSVVAYLQEHVAPCLIGM 74 (418)
T ss_dssp CCEEEEEEEEE--CSSSCEEEEEEEETTSCE----------EEEECCC-------TTC---HHHHHHHHHHTHHHHHTTS
T ss_pred CEEEEEEEEEE--cCCCcEEEEEEEECCCCE----------EEEeccC-------CCC---hHHHHHHHHHHHHHHhcCC
Confidence 99999998655 33457899999999 986 9999732 111 2345566888899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.++++||+.|.+. ..++++++..+|++|||+||||++||.+|+|||+||| |..++++|++ .++++.
T Consensus 75 dp~~ie~l~~~~~~~-~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y--~~~~~~------ 142 (418)
T 3r4e_A 75 DPRRIEDIWQYVYRG-AYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLG---GRSRDGIMVY--GHANGS------ 142 (418)
T ss_dssp CTTCHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHT---CCSCSSEEEE--EEEEES------
T ss_pred ChhhHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhC---CccCCeeeEE--EeCCCC------
Confidence 999999999999874 2234445667899999999999999999999999999 7777888874 433221
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccc--CC----------CCCCCCC---------CCChH
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNV--GD----------EGGFAPN---------VQDNR 261 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~v--g~----------~g~~~~~---------~~~~~ 261 (394)
+.+ ...+++.+...+||+++| .|.|...... |. .++ .|. ++.+.
T Consensus 143 -~~e---------~~~~~a~~~~~~Gf~~~K----~k~G~~~~~~~~g~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~d~ 207 (418)
T 3r4e_A 143 -DIA---------ETVEAVGHYIDMGYKAIR----AQTGVPGIKDAYGVGRGKLYYEPADAS-LPSVTGWDTRKALNYVP 207 (418)
T ss_dssp -SHH---------HHHHHHHHHHHTTCSEEE----EEECCTTC------------------C-CCCEEEECHHHHHHHHH
T ss_pred -CHH---------HHHHHHHHHHHcCCCEEE----EecCCcccccccccccccccccccccc-ccccccccchhHHHHHH
Confidence 112 235667777778899988 6655311000 00 000 011 12234
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 262 EGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 262 ~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
+++++||+++ | +|+.|++|+ |+.| +.++++++ .+.++++++.|||||++++
T Consensus 208 ~~v~avR~a~---G--~d~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEqP~~~~ 258 (418)
T 3r4e_A 208 KLFEELRKTY---G--FDHHLLHDG--------HHRY---------------TPQEAANL-GKMLEPYQLFWLEDCTPAE 258 (418)
T ss_dssp HHHHHHHHHH---C--SSSEEEEEC--------TTCS---------------CHHHHHHH-HHHHGGGCCSEEESCSCCS
T ss_pred HHHHHHHHHc---C--CCCeEEEeC--------CCCC---------------CHHHHHHH-HHHHHhhCCCEEECCCCcc
Confidence 4556666655 3 489999999 5655 56788875 4558999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++|++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 259 d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~a~d~v~~k~~~~GGit~ 310 (418)
T 3r4e_A 259 NQEAFRLVRQHTVTPLAVGEI-FNTIWDAKDLIQNQLIDYIRATVVGAGGLTH 310 (418)
T ss_dssp SGGGGHHHHHHCCSCEEECTT-CCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred CHHHHHHHHhcCCCCEEEcCC-cCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 999999999999999999997 5679999999999999999999999999974
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=341.13 Aligned_cols=283 Identities=11% Similarity=0.136 Sum_probs=206.0
Q ss_pred ceEEEEEEEEEecC----CCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhh
Q 016156 44 AKVKSVKARQIIDS----RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPK 118 (394)
Q Consensus 44 ~~I~~V~~r~v~~~----~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~ 118 (394)
|||++|+++.+--. .++..+.|+|+|| |++ |+||+... .+ +...+...|++.++|.
T Consensus 2 MkIt~i~~~~v~~plp~~~~~~~~~V~v~td~G~~----------G~GE~~~~------~~---~~~~~~~~i~~~l~p~ 62 (404)
T 4e5t_A 2 MRLSDIETFVVGNPPPRHGGRYFIFVKLVTACGIT----------GYGEIYNA------TF---GPDLVAKMAEDVFARQ 62 (404)
T ss_dssp CCEEEEEEEEEECCTTCTTCSEEEEEEEEETTSCE----------EEEEECCC------SS---CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEeccCCcccCCCceEEEEEEECCCCE----------EEEeeccC------CC---chHHHHHHHHHHHHHH
Confidence 89999999888321 1356899999999 986 99997321 11 2345556677889999
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCC-CCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCc
Q 016156 119 LVGVDIRDQAEVDAIMLEIDGTP-NKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS 197 (394)
Q Consensus 119 LiG~dp~~~e~Id~~l~~~~~~~-~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~ 197 (394)
|+|+||.+++++|+.|++.. .+ +.+++..+|++|||+||||++||.+|+|||+||| |+.++++|++ +++....
T Consensus 63 liG~dp~~~e~~~~~~~~~~-~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y--~~~~~~~ 136 (404)
T 4e5t_A 63 FAGEDPHHIEKLWHKTYGAG-YTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLG---GKVHERLRSY--TYLYPTD 136 (404)
T ss_dssp TTTSCTTCHHHHHHHHHTTT-SCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTT---CCCCSSEEEE--EECCC--
T ss_pred hcCCChhHHHHHHHHHHHhh-hhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcC---CCCcCeEEEE--EEecccc
Confidence 99999999999999997621 22 2223346799999999999999999999999999 7777888864 4321100
Q ss_pred -C---C-CCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC---CCChHHHHHHHHH
Q 016156 198 -H---A-GNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPN---VQDNREGLVLLTD 269 (394)
Q Consensus 198 -~---~-~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~---~~~~~~~l~~v~~ 269 (394)
+ + +....+ .+.+...+++.+...+||+++| .|.|... .+..|. .+. .+.+.+++++||+
T Consensus 137 ~~~~p~~d~~~~~------~~~e~~~~~a~~~~~~G~~~~K----lK~g~~~--~~~~g~-~~~~~~~~~d~~~v~avR~ 203 (404)
T 4e5t_A 137 GDVYPDPDKPNVY------NDADMAAEAAAKAVDQGFTAVK----FDPAGAY--TIYDGH-QPSLEDLERSEAFCKQIRA 203 (404)
T ss_dssp --------CCCTT------TCHHHHHHHHHHHHHHTCSEEE----ECCSCCC--BTTCSB-CCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccC------CCHHHHHHHHHHHHHcCCCEEe----eCCCCCC--cccccc-cccHHHHHHHHHHHHHHHH
Confidence 0 0 000000 0112345667777778888888 5544210 011111 111 2233455666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | .|+.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|
T Consensus 204 a~---G--~d~~l~vDa--------n~~~---------------~~~~A~~~-~~~l~~~~i~~iEeP~~~~~~~~~~~l 254 (404)
T 4e5t_A 204 AV---G--TKADLLFGT--------HGQF---------------TVSGAKRL-ARRLEAYDPLWFEEPIPPEKPEDMAEV 254 (404)
T ss_dssp HH---G--GGSEEEECC--------CSCB---------------CHHHHHHH-HHHHGGGCCSEEECCSCTTCHHHHHHH
T ss_pred Hc---C--CCCeEEEeC--------CCCc---------------CHHHHHHH-HHHHhhcCCcEEECCCCcccHHHHHHH
Confidence 65 3 489999999 5655 56788875 556999999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 255 ~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 298 (404)
T 4e5t_A 255 ARYTSIPVATGER-LCTKYEFSRVLETGAASILQMNLGRVGGLLE 298 (404)
T ss_dssp HHHCSSCEEECTT-CCHHHHHHHHHHHTCCSEECCCTTTSSCHHH
T ss_pred HhhCCCCEEeCCC-cCCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 9999999999997 5679999999999999999999999999984
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=342.61 Aligned_cols=274 Identities=16% Similarity=0.230 Sum_probs=204.1
Q ss_pred cceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 43 SAKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 43 ~~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
.|||++|++..+ ..+++++.|+|+|| |++ |+||+.. .++. ..+...|++.++|.|+|
T Consensus 22 ~mkIt~v~~~~~--~~~~~~v~V~v~td~Gi~----------G~GE~~~---------~g~~-~~~~~~l~~~l~p~LiG 79 (426)
T 4e4f_A 22 SMKIVSAEVFVT--CPGRNFVTLKITTDSGLT----------GLGDATL---------NGRE-LPVASYLNDHVCPQLIG 79 (426)
T ss_dssp CCBEEEEEEEEE--CSSSCEEEEEEEETTSCE----------EEEECCC---------TTCH-HHHHHHHHHTHHHHHTT
T ss_pred CcEEEEEEEEEE--cCCCCEEEEEEEECCCCE----------EEEeccc---------CCCc-HHHHHHHHHHHHHHHcC
Confidence 399999998655 34567899999999 986 9999732 2222 23456688889999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
+||.+++++|+.|++. ..++++++..+|++|||+||||++||.+|+|||+||| |..++++|++. ...+.
T Consensus 80 ~dp~~ie~i~~~l~~~-~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~y~--~~~~~----- 148 (426)
T 4e4f_A 80 RDAHQIEDIWQYFYKG-AYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLG---GASRTGVMVYC--HTTGH----- 148 (426)
T ss_dssp SBTTCHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHT---CCSSSSEEEEE--EECCS-----
T ss_pred CChhhHHHHHHHHHhh-ccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcC---CCCCCceeEeE--eCCCC-----
Confidence 9999999999999874 2334455667899999999999999999999999999 77777887753 32211
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcc--c----CCCCCCCCC----------CC------C
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACN--V----GDEGGFAPN----------VQ------D 259 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~--v----g~~g~~~~~----------~~------~ 259 (394)
+.++ ..+++.+...+||+++| .|.|..... . +..-.+.+. ++ .
T Consensus 149 --~~~~---------~~~~~~~~~~~Gf~~iK----ikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
T 4e4f_A 149 --SIDE---------VLDDYAKHRDQGFKAIR----VQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDF 213 (426)
T ss_dssp --SHHH---------HHHHHHHHHHTTCSEEE----ECC-------------------CCSEESSSCCEEEECHHHHHHH
T ss_pred --CHHH---------HHHHHHHHHHcCCCEEE----EeccCCccccccccccccccccccccccccccccccchhHHHHH
Confidence 2222 35566666777898888 554421100 0 000000110 00 0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCC
Q 016156 260 NREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFD 339 (394)
Q Consensus 260 ~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~ 339 (394)
..+++++||+++ | +|+.|++|+ |+.| +.++++++ .+.+++|++.|||||++
T Consensus 214 ~~e~v~avR~a~---G--~d~~L~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEeP~~ 264 (426)
T 4e4f_A 214 TPKLFEAVRDKF---G--FNEHLLHDM--------HHRL---------------TPIEAARF-GKSVEDYRLFWMEDPTP 264 (426)
T ss_dssp HHHHHHHHHHHH---T--TSSEEEEEC--------TTCS---------------CHHHHHHH-HHHTGGGCCSEEECCSC
T ss_pred HHHHHHHHHHHh---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHhhcCCCEEECCCC
Confidence 134566666666 3 499999999 5655 56788875 45589999999999999
Q ss_pred CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 340 QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 340 ~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++++++|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 265 ~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~ 318 (426)
T 4e4f_A 265 AENQACFRLIRQHTVTPIAVGEV-FNSIWDCKQLIEEQLIDYIRTTITHAGGITG 318 (426)
T ss_dssp CSSGGGGHHHHTTCCSCEEECTT-CCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred hHHHHHHHHHHhcCCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 99999999999999999999997 4679999999999999999999999999974
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=336.71 Aligned_cols=272 Identities=15% Similarity=0.203 Sum_probs=203.9
Q ss_pred ceEEEEEEEEEecCC----CCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhh
Q 016156 44 AKVKSVKARQIIDSR----GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPK 118 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~----g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~ 118 (394)
|||++|+++.+--.. .++.+.|+|+|| |++ |+||+. .++++.++...+.+.|+|.
T Consensus 3 MkI~~i~~~~~~~p~~~~~~~~~~~V~v~td~G~~----------G~GE~~----------~~~~~~~~~~~~~~~l~p~ 62 (393)
T 4dwd_A 3 LKIAKVEALSVAMGDGTGWMPTSAFVRITAEDGTV----------GWGEAS----------PMLGGIASLGVVARDIAPF 62 (393)
T ss_dssp CBEEEEEEEEEECCC-----CEEEEEEEEETTSCE----------EEEEEC----------CGGGGHHHHHHHHHHTHHH
T ss_pred CEEEEEEEEEEcCCCcccccceEEEEEEEECCCCE----------EEEEcc----------CcHHHHHHHHHHHHHHHHH
Confidence 899999998883220 045799999999 986 999974 2334555534434459999
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcC
Q 016156 119 LVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSH 198 (394)
Q Consensus 119 LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~ 198 (394)
|+|+||.+++++|+.|++.....+.+++..+|++|||+||||++||.+|+|||+||| |..++++|+ |.+++|+..
T Consensus 63 liG~d~~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~--y~s~~g~~~ 137 (393)
T 4dwd_A 63 LEGQEVLDHAVLLDRMMHRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLG---GAWRTRLPC--YSSIGGNAA 137 (393)
T ss_dssp HTTSBGGGHHHHHHHHHHHTGGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEE--EEEECCCSS
T ss_pred HCCCCcccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceee--EEecCccCC
Confidence 999999999999999987321112235667899999999999999999999999999 766777776 555532211
Q ss_pred CCCCCcccceeeccCCCCCHHHH-HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 016156 199 AGNNLAMQEFMILPVGATSFAEA-LRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT 277 (394)
Q Consensus 199 ~~~~l~~~e~~i~p~~~~~~~ea-~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~ 277 (394)
. +. +...+++ .+...+||+++| .|.|..... ...+.+.+.+++++||+++ |
T Consensus 138 ~----~~---------e~~~~~a~~~~~~~G~~~~K----lKvG~~~~~------~~~~~~~d~~~v~avR~a~---g-- 189 (393)
T 4dwd_A 138 R----SV---------DEVVREVARRVEAEQPAAVK----IRWDGDRTR------CDVDIPGDIAKARAVRELL---G-- 189 (393)
T ss_dssp S----CH---------HHHHHHHHHHHHHHCCSEEE----EECCCCTTC------CSCCHHHHHHHHHHHHHHH---C--
T ss_pred C----CH---------HHHHHHHHHHHHHcCCCEEE----EccCCCCcc------cccCHHHHHHHHHHHHHHh---C--
Confidence 0 11 2235566 666777898888 564421000 0112333455555555555 3
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeE
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQL 357 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I 357 (394)
+++.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|++++++||
T Consensus 190 ~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI 245 (393)
T 4dwd_A 190 PDAVIGFDA--------NNGY---------------SVGGAIRV-GRALEDLGYSWFEEPVQHYHVGAMGEVAQRLDITV 245 (393)
T ss_dssp TTCCEEEEC--------TTCC---------------CHHHHHHH-HHHHHHTTCSEEECCSCTTCHHHHHHHHHHCSSEE
T ss_pred CCCeEEEEC--------CCCC---------------CHHHHHHH-HHHHHhhCCCEEECCCCcccHHHHHHHHhhCCCCE
Confidence 489999999 5655 46788875 45589999999999999999999999999999999
Q ss_pred EecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 358 ~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||. ++++++++++++.+ +|++++|++++||||+
T Consensus 246 a~dE~-~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~ 280 (393)
T 4dwd_A 246 SAGEQ-TYTLQALKDLILSG-VRMVQPDIVKMGGITG 280 (393)
T ss_dssp EBCTT-CCSHHHHHHHHHHT-CCEECCCTTTTTHHHH
T ss_pred EecCC-cCCHHHHHHHHHcC-CCEEEeCccccCCHHH
Confidence 99997 56799999999999 9999999999999984
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=336.92 Aligned_cols=266 Identities=16% Similarity=0.218 Sum_probs=208.8
Q ss_pred cceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 43 SAKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 43 ~~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
.|+|++|+++.+ ..+.| +..+.|+|+|| |++ |+||+.... .+.|.+++.+.+..
T Consensus 5 ~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~---~~~~~~e~~~~~~~ 71 (383)
T 3i4k_A 5 DLTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVI----------GYGEGVVPG---GPWWGGESVETMKA 71 (383)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECCSS---STTTTSCCHHHHHH
T ss_pred CCEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCE----------EEEecccCC---CCccCCCCHHHHHH
Confidence 399999999887 22333 35799999999 986 999975421 13577888888888
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
.|++.++|.|+|+||.+++++|+.|++.. . + ..+|++|||+||||+.||.+|+|||+||| |..++++|++
T Consensus 72 ~i~~~l~p~l~G~d~~~~~~~~~~l~~~~--~--~--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~r~~v~~~- 141 (383)
T 3i4k_A 72 LVDGYLAPVLIGRAVSELAGIMADLERVV--A--R--ARYAKAAVDVAMHDAWARSLNVPVRDLLG---GTVRDKVDVT- 141 (383)
T ss_dssp HHHHTTHHHHTTSBGGGHHHHHHHHHHHC--C--S--CHHHHHHHHHHHHHHHHHHTTSBGGGGTT---CCSCSEEEBC-
T ss_pred HHHhhhhHHHcCCCccCHHHHHHHHHHHh--c--C--CHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCeEEEe-
Confidence 89999999999999999999999998732 1 1 14799999999999999999999999999 7777788874
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
.+++.+ +. +...+++.+...+ ||+++| .|.| ..+.+.+.+++++||
T Consensus 142 -~t~~~~-------~~---------~~~~~~a~~~~~~~G~~~~K----~Kvg------------~~~~~~d~~~v~avR 188 (383)
T 3i4k_A 142 -WALGVL-------PL---------DVAVAEIEERIEEFGNRSFK----LKMG------------AGDPAEDTRRVAELA 188 (383)
T ss_dssp -EEECSC-------CH---------HHHHHHHHHHHHHHCCSEEE----EECC------------SSCHHHHHHHHHHHH
T ss_pred -EEeeCC-------CH---------HHHHHHHHHHHHhcCCcEEE----EeeC------------CCCHHHHHHHHHHHH
Confidence 333222 11 2235667777776 888888 5543 112223344444444
Q ss_pred HHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHH
Q 016156 269 DAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 269 ~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~ 348 (394)
+++ | .++.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++
T Consensus 189 ~a~---g--~~~~l~vDa--------n~~~---------------~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~ 239 (383)
T 3i4k_A 189 REV---G--DRVSLRIDI--------NARW---------------DRRTALHY-LPILAEAGVELFEQPTPADDLETLRE 239 (383)
T ss_dssp HTT---T--TTSEEEEEC--------TTCS---------------CHHHHHHH-HHHHHHTTCCEEESCSCTTCHHHHHH
T ss_pred HHc---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEECCCChhhHHHHHH
Confidence 443 3 489999999 5655 46788875 45589999999999999999999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 240 l~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~ 284 (383)
T 3i4k_A 240 ITRRTNVSVMADES-VWTPAEALAVVKAQAADVIALKTTKHGGLLE 284 (383)
T ss_dssp HHHHHCCEEEESTT-CSSHHHHHHHHHHTCCSEEEECTTTTTSHHH
T ss_pred HHhhCCCCEEecCc-cCCHHHHHHHHHcCCCCEEEEcccccCCHHH
Confidence 99999999999997 5689999999999999999999999999974
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=336.63 Aligned_cols=270 Identities=19% Similarity=0.188 Sum_probs=201.2
Q ss_pred ceEEEEEEEEEe---------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 44 AKVKSVKARQII---------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v~---------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
|+|++|+++.+- ++.+ ...+.|+|+|| |++ |+||+.... ...+..++..
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~~-------~~~~~~~~~~ 63 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIE----------GYGFTGTHA-------HLPSDRLITS 63 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCE----------EEEEEEECC-------CHHHHHHHHH
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCE----------EEEeccCcc-------ccCcHHHHHH
Confidence 899999998772 1222 25699999999 986 999975411 0012345556
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCC--ccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccce
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKS--KIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPV 187 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~--~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~ 187 (394)
.|++.++|.|+|+||.+++++|+.|++.......+ ++..+|++|||+||||++||.+|+|||+||| |..+.++|+
T Consensus 64 ~i~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llG---g~~~~~v~~ 140 (372)
T 3tj4_A 64 CISDCYAPLLLGEDASDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLG---GARTAGVEA 140 (372)
T ss_dssp HHHHTTHHHHTTSBTTCHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSCEEE
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcC---CCCCCCeEE
Confidence 67778999999999999999999998621001112 4557899999999999999999999999999 766655765
Q ss_pred eeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHH
Q 016156 188 PAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVL 266 (394)
Q Consensus 188 p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~ 266 (394)
|+++ +|... .+. +...+++.++..+ ||+++| .|.| .++.+.+.+++++
T Consensus 141 --y~s~-~~~~~---~~~---------~~~~~~a~~~~~~~G~~~~K----~Kvg------------~~~~~~d~~~v~a 189 (372)
T 3tj4_A 141 --YNTD-IGWLS---FTL---------EDLLAGSARAVEEDGFTRLK----IKVG------------HDDPNIDIARLTA 189 (372)
T ss_dssp --EECT-TCCTT---SCH---------HHHHHHHHHHHHTTCCCEEE----EECC------------CSSHHHHHHHHHH
T ss_pred --EEec-CCccC---CCH---------HHHHHHHHHHHHccCCCEEE----EcCC------------CCCHHHHHHHHHH
Confidence 5542 22211 111 2235666667777 888887 5533 1222333445555
Q ss_pred HHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHH
Q 016156 267 LTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSW 346 (394)
Q Consensus 267 v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~ 346 (394)
||+++ | +++.|++|+ |+.| +.++++++. +.+++|++.|||||++++|++++
T Consensus 190 vR~~~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~ 240 (372)
T 3tj4_A 190 VRERV---D--SAVRIAIDG--------NGKW---------------DLPTCQRFC-AAAKDLDIYWFEEPLWYDDVTSH 240 (372)
T ss_dssp HHHHS---C--TTCEEEEEC--------TTCC---------------CHHHHHHHH-HHTTTSCEEEEESCSCTTCHHHH
T ss_pred HHHHc---C--CCCcEEeeC--------CCCC---------------CHHHHHHHH-HHHhhcCCCEEECCCCchhHHHH
Confidence 55554 3 489999999 5655 467888754 45899999999999999999999
Q ss_pred HHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 347 ~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 241 ~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~ 287 (372)
T 3tj4_A 241 ARLARNTSIPIALGEQ-LYTVDAFRSFIDAGAVAYVQPDVTRLGGITE 287 (372)
T ss_dssp HHHHHHCSSCEEECTT-CCSHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHhhcCCCEEeCCC-ccCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 9999999999999997 5789999999999999999999999999984
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=334.32 Aligned_cols=265 Identities=17% Similarity=0.230 Sum_probs=197.8
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|||++|+++.+ ..+.| +.++.|+|+|||++ |+||+.... .|.|.+++.+++...|
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~tdG~~----------G~GE~~~~~---~p~~~~e~~~~~~~~i 67 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSEGLV----------GVGEGGSVG---GPVWSAECAETIKIIV 67 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEBTTBC----------CEEECCCST---TTTTSSCCHHHHHHHH
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEECCcE----------EEEEecCCC---CCccCcccHHHHHHHH
Confidence 89999998876 23444 36799999987765 999975432 2467888888988889
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
++.|+|.|+|+||.+++++|+.|.+. ... ..+|++|||+||||+.||.+|+|||++|| |..++.+|+ +.
T Consensus 68 ~~~l~p~liG~d~~~~~~~~~~~~~~--~~~----~~~A~said~AlwDl~gK~~g~Pl~~lLG---g~~~~~~~~--~~ 136 (370)
T 2chr_A 68 ERYLAPHLLGTDAFNVSGALQTMARA--VTG----NASAKAAVEMALLDLKARALGVSIAELLG---GPLRSAIPI--AW 136 (370)
T ss_dssp HHHTHHHHTTSCTTCHHHHHHHHHTT--CSS----CHHHHHHHHHHHHHHHHHHTTCCHHHHTT---CCSCSEEEB--EE
T ss_pred HHHHHHHhcCCCcccHHHHHHHHhhc--ccc----cHHHHHHHHHHHHHHHHHhcCCccccccC---Cccccccce--ee
Confidence 99999999999999999999999852 111 13699999999999999999999999999 776777665 33
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHH-HHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMG-SEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~-~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+..+. ..+ ...+..+.. ..+|+.+| .| +|. . ++.+.++.++..
T Consensus 137 ~~~~~~-------~~~---------~~~~~~~~~~~~g~~~~K----~K-------vg~-----~---~~~~d~~~v~av 181 (370)
T 2chr_A 137 TLASGD-------TKR---------DLDSAVEMIERRRHNRFK----VK-------LGF-----R---SPQDDLIHMEAL 181 (370)
T ss_dssp EECSSC-------HHH---------HHHHHHHHHHTTSCCEEE----EE-------CSS-----S---CHHHHHHHHHHH
T ss_pred eeccCc-------hhh---------hHHHHHHHHhhcccceee----cc-------ccc-----C---ChHHHHHHHHHH
Confidence 332221 001 122222221 12344443 33 321 1 223444444333
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
.+.+| +++.|++|+ |+.| |.++++++ .+.+++|++.|||||++++|++++++|+
T Consensus 182 r~~~g--~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~l~~~~~~~iEeP~~~~d~~~~~~l~ 235 (370)
T 2chr_A 182 SNSLG--SKAYLRVDV--------NQAW---------------DEQVASVY-IPELEALGVELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp HHHTT--TTSEEEEEC--------TTCC---------------CTHHHHHH-HHHHHTTTCCEEECCSCSSCHHHHHHHH
T ss_pred HHhcC--CCcEEEecC--------CCCC---------------CHHHHHHH-HHHHHhcCCceecCCCChhhhhhhhHHh
Confidence 33334 589999999 5655 45688875 4558999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 236 ~~~~ipIa~dE~-~~~~~~~~~~~~~~a~d~i~~d~~~~GGit~ 278 (370)
T 2chr_A 236 DNNRVAIMADES-LSTLASAFDLARDRSVDVFSLKLCNMGGVSA 278 (370)
T ss_dssp HHCSSEEEESSS-CCSHHHHHHHHTTTCCSEECCCHHHHTSHHH
T ss_pred hhccCCccCCcc-CCCHHHHHHHHHcCCCcEEEeCCcccCCHHH
Confidence 999999999997 4679999999999999999999999999984
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=331.03 Aligned_cols=263 Identities=14% Similarity=0.191 Sum_probs=196.2
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|++... .+.+.|+|+|| |++ |+||+.. |.. ..+...|++.|+|.|+|+
T Consensus 23 mkIt~v~~~~~-----~~~~~V~v~Td~G~~----------G~GE~~~--------~~~---~~~~~~i~~~l~p~LiG~ 76 (388)
T 3tcs_A 23 MKLKAIETFTN-----DAVGFVRVTTQDGAQ----------GWGQVST--------YHA---DITCTVLHRQVAPWMLGQ 76 (388)
T ss_dssp CBEEEEEEEEC-----SSCEEEEEEETTSCE----------EEEECCS--------SSH---HHHHHHHHHHTHHHHTTS
T ss_pred cEEEEEEEEEe-----CCeEEEEEEECCCCE----------EEEeccC--------Ccc---HHHHHHHHHHHHHHhCCC
Confidence 99999996542 25799999999 986 9999732 222 334456778899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|++.. ....+....+|++|||+||||++||.+|+|||+||| |.. +++|+ |++..+. .
T Consensus 77 d~~~~e~l~~~~~~~~-~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---g~~-~~v~~--y~s~~~~-----~ 144 (388)
T 3tcs_A 77 DITDLDDLLDIVTERE-HKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLG---GTP-GLIRA--YASSMKR-----D 144 (388)
T ss_dssp BCTTHHHHHHHHHHHT-TTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCC-EEEEE--EEECCCS-----S
T ss_pred CcccHHHHHHHHHHhh-hccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhC---CCC-CceEE--EEecCcC-----C
Confidence 9999999999998632 222334445799999999999999999999999999 754 56665 5431110 0
Q ss_pred CcccceeeccCCCCCHHHHHHH-HHHHHHHHHHHHHhhcCCCCcccCCCCCCCC--CCCChHHHHHHHHHHHHHcCCCCC
Q 016156 203 LAMQEFMILPVGATSFAEALRM-GSEVYHILKGIIKEKYGQDACNVGDEGGFAP--NVQDNREGLVLLTDAIEKAGYTGK 279 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~-~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~--~~~~~~~~l~~v~~Av~~ag~~gd 279 (394)
.+.. ...+++.+. ..+||+++| .|.|. +.+... ..+.+.+.+++||+++ | ++
T Consensus 145 ~~~~---------~~~~~~~~~~~~~Gf~~~K----~KvG~-------~~~~d~~~~~~~~~~~v~avReav---G--~d 199 (388)
T 3tcs_A 145 ITPR---------DEAERLKRLRDTQGFTAFK----VRAGA-------EVGRNRDEWPGRTEEIIPTMRREL---G--DD 199 (388)
T ss_dssp SCHH---------HHHHHHHHHHHHHCCCEEE----EECSC-------TTCTTCCSSTTHHHHHHHHHHHHH---C--SS
T ss_pred CChH---------HHHHHHHHHHHhcCCCEEE----EccCC-------CcccccccchhHHHHHHHHHHHHh---C--CC
Confidence 1111 123333333 256788887 56442 111111 1122345677777776 3 48
Q ss_pred cEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEe
Q 016156 280 INIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVG 359 (394)
Q Consensus 280 i~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~g 359 (394)
+.|++|+ |+.| +.++++++ .+.+++|++.|||||++++|++++++|++++++||++
T Consensus 200 ~~l~vDa--------N~~~---------------~~~~A~~~-~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~ 255 (388)
T 3tcs_A 200 VDLLIDA--------NSCY---------------TPDRAIEV-GHMLQDHGFCHFEEPCPYWELAQTKQVTDALDIDVTG 255 (388)
T ss_dssp SEEEEEC--------TTCC---------------CHHHHHHH-HHHHHHTTCCEEECCSCTTCHHHHHHHHHHCSSCEEE
T ss_pred CeEEEeC--------CCCc---------------CHHHHHHH-HHHHhhcCCeEEECCCCccCHHHHHHHHHhcCCCEEc
Confidence 9999999 5655 56788875 4558999999999999999999999999999999999
Q ss_pred cCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 360 de~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||. ++++++++++++.+++|++|+|++++||||+
T Consensus 256 dE~-~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 289 (388)
T 3tcs_A 256 GEQ-DCDLPTWQRMIDMRAVDIVQPDILYLGGICR 289 (388)
T ss_dssp CTT-CCCHHHHHHHHHHTCCSEECCCHHHHTSHHH
T ss_pred CCc-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 997 5789999999999999999999999999984
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.29 Aligned_cols=266 Identities=16% Similarity=0.202 Sum_probs=198.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|++..+ ..+++.|+|+|| |++ |+||+.. + + ..+++...+++ |+|.|+|+
T Consensus 2 MkIt~i~~~~~----~~~~~~V~v~td~G~~----------G~GE~~~--------~-g-~~~~~~~~i~~-l~p~liG~ 56 (405)
T 3rr1_A 2 VKITRLTTYRL----PPRWMFLKVETDEGVT----------GWGEPVI--------E-G-RARTVEAAVHE-LSDYLIGQ 56 (405)
T ss_dssp CCEEEEEEEEE----TTTEEEEEEEETTSCE----------EEECCCC--------T-T-CHHHHHHHHHH-HGGGTTTS
T ss_pred CeEEEEEEEEE----CCCEEEEEEEECCCCE----------EEEeCCC--------C-C-CHHHHHHHHHH-HHHHHCCC
Confidence 89999999888 246799999999 986 9999742 1 1 13344445554 99999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNN 202 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~ 202 (394)
||.+++++|+.|.+.. ..+++++..+|++|||+||||++||.+|+|||+||| |..++++|+ |.++++.
T Consensus 57 dp~~~e~~~~~l~~~~-~~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~~~~~------ 124 (405)
T 3rr1_A 57 DPSRINDLWQTMYRAG-FYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLG---GLVRDKMRT--YSWVGGD------ 124 (405)
T ss_dssp CTTCHHHHHHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSCEEE--EEECCCS------
T ss_pred CcccHHHHHHHHHHhh-cccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---ccccCceee--eEeCCCC------
Confidence 9999999999998732 233345567899999999999999999999999999 777778776 4443211
Q ss_pred CcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEE
Q 016156 203 LAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINI 282 (394)
Q Consensus 203 l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l 282 (394)
+. +...+++.+...+||+++| . .|... ..+.......++.++.+++..+.+| +|+.|
T Consensus 125 -~~---------e~~~~~a~~~~~~G~~~iK----l-~G~~~------~~~~~~~~~~~~d~e~v~avR~avG--~d~~L 181 (405)
T 3rr1_A 125 -RP---------ADVIAGMKALQAGGFDHFK----L-NGCEE------MGIIDTSRAVDAAVARVAEIRSAFG--NTVEF 181 (405)
T ss_dssp -SH---------HHHHHHHHHHHHTTCCEEE----E-ESCCS------SSCBCSHHHHHHHHHHHHHHHHTTG--GGSEE
T ss_pred -CH---------HHHHHHHHHHHHcCCCEEE----E-ecCCc------ccccccchhHHHHHHHHHHHHHHhC--CCceE
Confidence 11 1235566666667788877 2 23110 0000111112334444432222223 48999
Q ss_pred EEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCc
Q 016156 283 GMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDL 362 (394)
Q Consensus 283 ~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~ 362 (394)
++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|++++++||++||.
T Consensus 182 ~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~ 237 (405)
T 3rr1_A 182 GLDF--------HGRV---------------SAPMAKVL-IKELEPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAGER 237 (405)
T ss_dssp EEEC--------CSCB---------------CHHHHHHH-HHHHGGGCCSCEECSSCCSSTHHHHHHHTTCSSCEEECTT
T ss_pred EEEC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEECCCCcccHHHHHHHHhcCCCCEEecCC
Confidence 9999 5655 46788875 4558999999999999999999999999999999999997
Q ss_pred cccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 363 LVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 363 ~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.++++++++++.+++|++++|++++||||+
T Consensus 238 -i~~~~~~~~~l~~~a~d~v~~d~~~~GGite 268 (405)
T 3rr1_A 238 -MFSRFDFKRVLEAGGVSILQPDLSHAGGITE 268 (405)
T ss_dssp -CCSHHHHHHHHHHCCCSEECCBTTTTTHHHH
T ss_pred -cCCHHHHHHHHHHhCCCeEEEChhhcCCHHH
Confidence 5689999999999999999999999999984
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=329.68 Aligned_cols=265 Identities=16% Similarity=0.194 Sum_probs=204.5
Q ss_pred ceEEEEEEEEEec----CC---CCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHh-
Q 016156 44 AKVKSVKARQIID----SR---GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDI- 114 (394)
Q Consensus 44 ~~I~~V~~r~v~~----~~---g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~- 114 (394)
|||++|+++.+-- +. +...+.|+|+|| |++ |+||. +++..++...|++.
T Consensus 3 MkI~~i~~~~~~~P~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~------------~~~~~~~~~~i~~~~ 60 (374)
T 3sjn_A 3 LKITDIEVLHLRVPAMDADCEWGEDAVIVKVHTDKGIV----------GVGEA------------DSSPLVVQACIEAPQ 60 (374)
T ss_dssp CBEEEEEEEEEESSCTTSCCCTTSEEEEEEEEETTSCE----------EEEEE------------SSCHHHHHHHHHCCC
T ss_pred cEEEEEEEEEEeccCcCCcCcccceEEEEEEEECCCCE----------EEEcC------------CCChHHHHHHHHhhh
Confidence 8999999998832 11 122389999999 986 99983 12345566667776
Q ss_pred -------HhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccce
Q 016156 115 -------LGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPV 187 (394)
Q Consensus 115 -------l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~ 187 (394)
|+|.|+|+||.+++++|+.|++.......+++..+|++|||+||||++||.+|+|||+||| |..++++|+
T Consensus 61 ~~~~~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---g~~r~~v~~ 137 (374)
T 3sjn_A 61 TNFYCNGLKRLLIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLG---GKYRDKIRC 137 (374)
T ss_dssp SBTTBCCHHHHHTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEE
T ss_pred ccchHhHHHHHHcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CCcCCceeE
Confidence 9999999999999999999987322222356778899999999999999999999999999 766778876
Q ss_pred eeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHH
Q 016156 188 PAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLL 267 (394)
Q Consensus 188 p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v 267 (394)
+ . +...+. + .+...+++.+...+||+++| .|.| ..| .+.+.+.+++++|
T Consensus 138 y--~----~~~~~~--~---------~e~~~~~a~~~~~~Gf~~iK----lk~g-------~~g---~~~~~d~~~v~av 186 (374)
T 3sjn_A 138 Y--G----TFIPAD--K---------PEDNVAIVQGLKDQGFSSIK----FGGG-------VMG---DDPDTDYAIVKAV 186 (374)
T ss_dssp E--E----EECCCS--S---------GGGGHHHHHHHHTTTCSEEE----EECT-------TTT---SCHHHHHHHHHHH
T ss_pred E--e----ccCCCC--C---------HHHHHHHHHHHHHcCCCEEE----eccC-------CCC---CCHHHHHHHHHHH
Confidence 4 2 111110 0 12346677777777899888 5533 111 1233345566666
Q ss_pred HHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccC-HHHHHHHHHHhhhcCCceeeeCCCCCCCHHHH
Q 016156 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLS-AQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSW 346 (394)
Q Consensus 268 ~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t-~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~ 346 (394)
|+++ | +++.|++|+ |+.| + .++++++ .+.++++++.|||||++++|++++
T Consensus 187 R~a~---g--~~~~l~vDa--------n~~~---------------~d~~~A~~~-~~~l~~~~i~~iEqP~~~~~~~~~ 237 (374)
T 3sjn_A 187 REAA---G--PEMEVQIDL--------ASKW---------------HTCGHSAMM-AKRLEEFNLNWIEEPVLADSLISY 237 (374)
T ss_dssp HHHH---C--SSSEEEEEC--------TTTT---------------CSHHHHHHH-HHHSGGGCCSEEECSSCTTCHHHH
T ss_pred HHHh---C--CCCeEEEEC--------CCCC---------------CCHHHHHHH-HHHhhhcCceEEECCCCcccHHHH
Confidence 6665 3 489999999 5544 5 6788875 455899999999999999999999
Q ss_pred HHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 347 ~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 238 ~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 284 (374)
T 3sjn_A 238 EKLSRQVSQKIAGGES-LTTRYEFQEFITKSNADIVQPDITRCGGITE 284 (374)
T ss_dssp HHHHHHCSSEEEECTT-CCHHHHHHHHHHHHCCSEECCBTTTSSHHHH
T ss_pred HHHHhhCCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 9999999999999997 4679999999999999999999999999984
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=334.36 Aligned_cols=285 Identities=16% Similarity=0.218 Sum_probs=200.0
Q ss_pred cceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcC
Q 016156 43 SAKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVG 121 (394)
Q Consensus 43 ~~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG 121 (394)
.|||++|++..+ + .+++.+.|+|+|| |++ |+||+. +++ +++...|++.|+|.|+|
T Consensus 3 ~mkIt~v~~~~~-~-~~~~~~~V~v~td~G~~----------G~GE~~---------~~~---~~~~~~i~~~l~p~liG 58 (410)
T 3dip_A 3 LPRITALRTIRL-P-ERPKLIWVEVETEDGLT----------GLGETF---------RGA---QAVEAVLHEQTAPAIIG 58 (410)
T ss_dssp CCBEEEEEEEEE-T-TEEEEEEEEEEETTSCE----------EEEEEE---------SCH---HHHHHHHHHTHHHHHTT
T ss_pred CCeEEEEEEEEE-C-CCCCEEEEEEEECCCCE----------EEEeCC---------CCh---HHHHHHHHHHHHHHhcC
Confidence 389999998766 3 2456899999999 986 999931 222 34556677789999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCc-CCC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS-HAG 200 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~-~~~ 200 (394)
+||.+++++|+.|++....++.+++..+|++|||+||||++||.+|+|||+||| |..++++|++.+....+|. +..
T Consensus 59 ~dp~~~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~yas~~~~~g~~~~~ 135 (410)
T 3dip_A 59 RAAENITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALG---GAARDRVPVYATCAGYDFNTSLG 135 (410)
T ss_dssp SBTTCHHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEEEEEECTTTC-----
T ss_pred CCcchHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhC---CCcCCceeEEEeccccccccccc
Confidence 999999999999975211123345667899999999999999999999999999 7777888875432111121 000
Q ss_pred ------------CCCc-ccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCCCCCCChHHHHHH
Q 016156 201 ------------NNLA-MQEFMILPVGATSFAEALRMGSEVYHILKGIIKE-KYGQDACNVGDEGGFAPNVQDNREGLVL 266 (394)
Q Consensus 201 ------------~~l~-~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~-k~G~~~~~vg~~g~~~~~~~~~~~~l~~ 266 (394)
..+. .++.+ ....+.+.++..+||+++| . ++|....++|..-+ ..+++.+.+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~G~~~~K----~~~~~~~~~K~G~~~~-~~~~~~d~e~v~a 205 (410)
T 3dip_A 136 GRRSIGSAELSTGPYDDQVAFM-----RDAGVLAESLVAEGYAAMK----IWPFDDFASITPHHIS-LTDLKDGLEPFRK 205 (410)
T ss_dssp ----------------------------CHHHHHHHHHHTTCSEEE----ECTTHHHHTTCTTCCC-HHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhh-----hhHHHHHHHHHHcCCCEEE----ECCccCccccccCcCC-HHHHHHHHHHHHH
Confidence 0000 00000 1112334455566787777 3 00000002221000 0112233455666
Q ss_pred HHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCC-CCCCCHHH
Q 016156 267 LTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP-FDQDDWSS 345 (394)
Q Consensus 267 v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdP-l~~~D~~~ 345 (394)
||+++ | +++.|++|+ |+.| |.++++++ .+.+++|++.||||| ++++|+++
T Consensus 206 vR~a~---g--~d~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEqP~~~~~~~~~ 256 (410)
T 3dip_A 206 IRAAV---G--QRIEIMCEL--------HSLW---------------GTHAAARI-CNALADYGVLWVEDPIAKMDNIPA 256 (410)
T ss_dssp HHHHH---T--TSSEEEEEC--------TTCB---------------CHHHHHHH-HHHGGGGTCSEEECCBSCTTCHHH
T ss_pred HHHHc---C--CCceEEEEC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEECCCCCcccHHH
Confidence 66665 3 489999999 5655 56788875 456899999999999 89999999
Q ss_pred HHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 346 ~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 257 ~~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 304 (410)
T 3dip_A 257 VADLRRQTRAPICGGEN-LAGTRRFHEMLCADAIDFVMLDLTWCGGLSE 304 (410)
T ss_dssp HHHHHHHHCCCEEECTT-CCSHHHHHHHHHTTCCSEEEECTTTSSCHHH
T ss_pred HHHHHhhCCCCEEecCC-cCCHHHHHHHHHcCCCCeEeecccccCCHHH
Confidence 99999999999999997 5789999999999999999999999999984
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=331.56 Aligned_cols=263 Identities=18% Similarity=0.232 Sum_probs=203.1
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- ++.| ++.+.|+|+|+ |++ |+||+... . .+...++..
T Consensus 27 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~--------~-~~~~~~~~~ 87 (383)
T 3toy_A 27 AAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVT----------GHSYLFAY--------T-RLALKPLVH 87 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCE----------EEEEEECS--------S-GGGHHHHHH
T ss_pred CEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCE----------EEEEeeCC--------C-CchHHHHHH
Confidence 899999998771 2333 35799999999 886 99997431 1 123445566
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
+.+.++|.|+|+||.+++ +|+.|.+.....+.+++..+|++|||+||||+.||.+|+|||+||| |.. +++|+ |
T Consensus 88 i~~~l~p~l~G~d~~~~e-~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~-~~v~~--y 160 (383)
T 3toy_A 88 LVEDIGRELAGKALVPVD-LMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLG---GSA-RPIPA--Y 160 (383)
T ss_dssp HHHHHHHHTTTCBCCHHH-HHHHHHHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCC-CCEEE--E
T ss_pred HHHHHHHHhCCCCCCcHH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-CceEE--e
Confidence 778899999999999999 9999987422222234556899999999999999999999999999 643 56665 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
++ +|.. +. +...+++.++..+ ||+++| .|.| ..+.+.+.+++++||+
T Consensus 161 ~s--~g~~-----~~---------e~~~~~a~~~~~~~G~~~~K----lKvG------------~~~~~~d~~~v~avR~ 208 (383)
T 3toy_A 161 DS--YGVL-----DA---------RDDERTLRTACDEHGFRAIK----SKGG------------HGDLATDEAMIKGLRA 208 (383)
T ss_dssp EE--CSSC-----CH---------HHHHHHHHHHHHTSCCCEEE----EECC------------SSCHHHHHHHHHHHHH
T ss_pred Ee--cCCC-----CH---------HHHHHHHHHHHHccCCcEEE----EecC------------CCCHHHHHHHHHHHHH
Confidence 54 2321 11 2246677777777 888888 5533 1223344566666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +++.|++|+ |+.| +.++++++. +.++++++.|||||++++|++++++|
T Consensus 209 a~---G--~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l 259 (383)
T 3toy_A 209 LL---G--PDIALMLDF--------NQSL---------------DPAEATRRI-ARLADYDLTWIEEPVPQENLSGHAAV 259 (383)
T ss_dssp HH---C--TTSEEEEEC--------TTCS---------------CHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHH
T ss_pred Hh---C--CCCeEEEeC--------CCCC---------------CHHHHHHHH-HHHHhhCCCEEECCCCcchHHHHHHH
Confidence 66 3 489999999 5655 567888754 55899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 260 ~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~ 303 (383)
T 3toy_A 260 RERSEIPIQAGEN-WWFPRGFAEAIAAGASDFIMPDLMKVGGITG 303 (383)
T ss_dssp HHHCSSCEEECTT-CCHHHHHHHHHHHTCCSEECCCTTTTTHHHH
T ss_pred HhhcCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 9999999999997 5779999999999999999999999999974
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=338.79 Aligned_cols=268 Identities=17% Similarity=0.195 Sum_probs=200.0
Q ss_pred ceEEEEEEEEEec----------CCC----CceEEEEEEEC---CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHH
Q 016156 44 AKVKSVKARQIID----------SRG----NPTVEVDLITD---DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106 (394)
Q Consensus 44 ~~I~~V~~r~v~~----------~~g----~~tv~V~V~td---G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~ 106 (394)
|+|++|+++.+-- +.+ ..++.|+|+|| |+ +|+||+... +.+.+.
T Consensus 5 mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~----------~G~Ge~~~~---------g~~~~~ 65 (441)
T 4a35_A 5 GRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGI----------KGCGITFTL---------GKGTEV 65 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCC----------CEEEEEEEC---------STTHHH
T ss_pred CEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCC----------EEEEeeeCC---------CCChHH
Confidence 8999999998821 111 24799999999 55 499997541 233445
Q ss_pred HHHHhHHhHhhhhcCCCCCCHHHHHHHHHH-hcCC------CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLE-IDGT------PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 107 a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~-~~~~------~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
+...+ +.++|.|+|+||.+++++|+.|++ +... +..+++..+|+||||+||||++||.+|+|||+||| |
T Consensus 66 ~~~~i-~~l~~~liG~d~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G 141 (441)
T 4a35_A 66 VVCAV-NALAHHVLNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLV---D 141 (441)
T ss_dssp HHHHH-HHHGGGTTTCBHHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHH---H
T ss_pred HHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---C
Confidence 55556 569999999999999877766665 2211 11234557899999999999999999999999999 6
Q ss_pred Ccccccc---------------------------------------eeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 180 TKELVMP---------------------------------------VPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 180 ~~~~~iP---------------------------------------~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
..+++++ +|+|++. +|+.. .+. +...++
T Consensus 142 ~~r~~i~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~-~g~~~---~~~---------e~~~~~ 208 (441)
T 4a35_A 142 MDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTS-CAWLG---YSD---------DTLKQL 208 (441)
T ss_dssp SCHHHHHTTCCCTTTTTTCCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECT-TCCTT---CCH---------HHHHHH
T ss_pred CCcccceecccccccccccchhhhhhhhhhcccccchhhhhhcccCcceEEec-cccCC---CCH---------HHHHHH
Confidence 6555554 4567652 23211 111 223556
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.+...+||+++| .|.| . +.+.+.+++++||+++ | +++.|++|+ |+.|
T Consensus 209 a~~~~~~Gf~~~K----lKvG-------~------~~~~d~~~v~avR~a~---G--~~~~l~vDa--------N~~~-- 256 (441)
T 4a35_A 209 CAQALKDGWTRFK----VKVG-------A------DLQDDMRRCQIIRDMI---G--PEKTLMMDA--------NQRW-- 256 (441)
T ss_dssp HHHHHHTTCCEEE----EECS-------S------CHHHHHHHHHHHHHHH---C--TTSEEEEEC--------TTCC--
T ss_pred HHHHHHCCCCEEE----EcCC-------C------CHHHHHHHHHHHHHHh---C--CCCeEEEEC--------CCCC--
Confidence 6677777888887 5533 1 2333455666666666 3 489999999 5655
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhh---cCCeEEecCccccCHHHHHHHHhcC
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSS---VDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~---~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
+..+++++. +.+++|++.|||||++++|++++++|+++ +++||++||. +.+.++++++++.+
T Consensus 257 -------------~~~~A~~~~-~~L~~~~~~~iEeP~~~~d~~~~~~l~~~l~~~~iPIa~gE~-~~~~~~~~~~l~~~ 321 (441)
T 4a35_A 257 -------------DVPEAVEWM-SKLAKFKPLWIEEPTSPDDILGHATISKALVPLGIGIATGEQ-CHNRVIFKQLLQAK 321 (441)
T ss_dssp -------------CHHHHHHHH-HHHGGGCCSEEECCSCTTCHHHHHHHHHHHGGGTCEEEECTT-CCSHHHHHHHHHTT
T ss_pred -------------CHHHHHHHH-HhhcccCccEEeCCCCcccHHHHHHHHHhccCCCCCEEeCCc-cccHHHHHHHHHcC
Confidence 567888864 55899999999999999999999999997 7899999997 46799999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 322 a~div~~d~~~~GGit~ 338 (441)
T 4a35_A 322 ALQFLQIDSCRLGSVNE 338 (441)
T ss_dssp CCSEECCCTTTSSHHHH
T ss_pred CCCEEEECccccCCHHH
Confidence 99999999999999984
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=332.36 Aligned_cols=261 Identities=18% Similarity=0.236 Sum_probs=205.2
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+ ..+.| +..+.|+|+|+ |++ |+||+... +.|.+++.+++...
T Consensus 3 MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~----------G~Ge~~~~-----~~~~get~~~~~~~ 67 (379)
T 3r0u_A 3 SKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVK----------GYGVAPAT-----TAITGDTLQGMQYI 67 (379)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEECC-----HHHHCCCHHHHHHH
T ss_pred CEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCE----------EEEEEECC-----CCccCCCHHHHHHH
Confidence 89999998877 23444 35799999999 986 99998542 23567777788888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|++.. ....+|++|||+||||+.||.+|+|||+||| |. ++++|++
T Consensus 68 i~~~l~p~l~G~d~~~~~~~~~~~~~~~------~~~~~A~said~ALwDl~gK~~g~Pv~~LLG---g~-r~~v~~y-- 135 (379)
T 3r0u_A 68 IREIFAPVILGSDLSDYKQTLELAFKKV------MFNSAAKMAIDLAYHDLLAKEQDISVAKLLG---AK-ANSIVTD-- 135 (379)
T ss_dssp HHHTTHHHHTTCBGGGHHHHHHHHHTTC------SSCHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CC-CCEEEBC--
T ss_pred HHHHhHHHhcCCCcccHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCeEEEE--
Confidence 8888999999999999999999998521 1235799999999999999999999999999 75 6787764
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++.+ +. +...+++.++..+||+.+| .|.| .+.+.+.+++++||++
T Consensus 136 ~t~g~~-------~~---------e~~~~~a~~~~~~Gf~~~K----lK~g-------------~~~~~d~~~v~avR~a 182 (379)
T 3r0u_A 136 VSISCG-------NV---------AETIQNIQNGVEANFTAIK----VKTG-------------ADFNRDIQLLKALDNE 182 (379)
T ss_dssp EEECCC-------CH---------HHHHHHHHHHHHTTCCEEE----EECS-------------SCHHHHHHHHHHHHHH
T ss_pred EEecCC-------CH---------HHHHHHHHHHHHcCCCEEe----eecC-------------CCHHHHHHHHHHHHHh
Confidence 333211 11 2235666666677888887 5533 1222334455555555
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc--CCceeeeCCCCCCCHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD--FPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~--~~i~~iEdPl~~~D~~~~~~ 348 (394)
+ | +++.|++|+ |+.| +.++++++ .+.+++ +++.|||||++++|++++++
T Consensus 183 ~---g--~~~~L~vDa--------N~~w---------------~~~~A~~~-~~~l~~~~~~l~~iEeP~~~~d~~~~~~ 233 (379)
T 3r0u_A 183 F---S--KNIKFRFDA--------NQGW---------------NLAQTKQF-IEEINKYSLNVEIIEQPVKYYDIKAMAE 233 (379)
T ss_dssp C---C--TTSEEEEEC--------TTCC---------------CHHHHHHH-HHHHHTSCCCEEEEECCSCTTCHHHHHH
T ss_pred c---C--CCCeEEEeC--------CCCc---------------CHHHHHHH-HHHHhhcCCCcEEEECCCCcccHHHHHH
Confidence 4 3 389999999 5655 46788875 555899 89999999999999999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 234 l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~ 278 (379)
T 3r0u_A 234 ITKFSNIPVVADES-VFDAKDAERVIDEQACNMINIKLAKTGGILE 278 (379)
T ss_dssp HHHHCSSCEEESTT-CSSHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred HHhcCCCCEEeCCc-cCCHHHHHHHHHcCCCCEEEECccccCCHHH
Confidence 99999999999997 5789999999999999999999999999974
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=333.93 Aligned_cols=259 Identities=18% Similarity=0.221 Sum_probs=206.6
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.| +++++|+|+|+ |++ |+||+.... .++|.++++.++...
T Consensus 20 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~~---~~~~~~e~~~~~~~~ 86 (386)
T 1wue_A 20 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQ----------GFGELVAFE---QPDYVQETLVTERFI 86 (386)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCCS---STTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCE----------EEEEeecCC---CCcccCCcHHHHHHH
Confidence 99999998877 12333 35799999999 886 999985432 136788889999988
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|..++ + +.+|++|||+||||++||.+|+|||+||| | .++++|+++
T Consensus 87 i~~~l~p~l~G~d~~~~~~l~~~l~~~~-----g--~~~A~~aid~AlwDl~~k~~g~Pl~~llG---g-~~~~v~~~~- 154 (386)
T 1wue_A 87 IQQHLIPLLLTEAIEQPQEVSTIFEEVK-----G--HWMGKAALETAIWDLYAKRQQKSLTEFFG---P-TRRKIPVGI- 154 (386)
T ss_dssp HHHTHHHHHTTSCCCSTHHHHHHGGGSC-----S--CHHHHHHHHHHHHHHHHHHTTSBGGGGSS---S-CCSEEECCE-
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHcc-----C--chHHHHHHHHHHHHHHHHHhCCcHHHHhC---C-CCCeeEeeE-
Confidence 9999999999999999999999996532 1 25899999999999999999999999999 6 467888764
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
+++.+ .+.++ ..+++.++..+||+++| .|.| + +.+.+++++||++
T Consensus 155 -~~g~~------~~~~~---------~~~~a~~~~~~G~~~~K----iKvg-------------~--~~d~~~v~avr~a 199 (386)
T 1wue_A 155 -SLGIQ------EDLPQ---------LLKQVQLAVEKGYQRVK----LKIR-------------P--GYDVEPVALIRQH 199 (386)
T ss_dssp -EECCC------SCHHH---------HHHHHHHHHHTTCSCEE----EECB-------------T--TBSHHHHHHHHHH
T ss_pred -EecCC------CCHHH---------HHHHHHHHHHhhhheEE----EeeC-------------c--HHHHHHHHHHHHh
Confidence 32111 12233 35677777778888888 4522 1 1235667666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ +++.|++|+ |+.|+ .+++ ++ .+.+++|+|.|||||++++|+++|++|+
T Consensus 200 ~------~~~~l~vDa--------N~~~~---------------~~~a-~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~ 248 (386)
T 1wue_A 200 F------PNLPLMVDA--------NSAYT---------------LADL-PQ-LQRLDHYQLAMIEQPFAADDFLDHAQLQ 248 (386)
T ss_dssp C------TTSCEEEEC--------TTCCC---------------GGGH-HH-HHGGGGSCCSCEECCSCTTCSHHHHHHH
T ss_pred C------CCCeEEEeC--------CCCCC---------------HHHH-HH-HHHHHhCCCeEEeCCCCcccHHHHHHHH
Confidence 4 689999999 67664 3455 54 5669999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||+. .++++++++++.+++|++|+|++++||||+
T Consensus 249 ~~~~ipIa~dE~~-~~~~~~~~~i~~~a~d~i~ik~~~~GGit~ 291 (386)
T 1wue_A 249 RELKTRICLDENI-RSLKDCQVALALGSCRSINLKIPRVGGIHE 291 (386)
T ss_dssp TTCSSCEEECTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HhcCCCEEeCCcc-CCHHHHHHHHHcCCCCEEEEchhhhCCHHH
Confidence 9999999999985 579999999999999999999999999984
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=332.63 Aligned_cols=266 Identities=16% Similarity=0.156 Sum_probs=202.9
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ .++.| ++.+.|+|+|+ |++ |+||+... .. +...++..
T Consensus 28 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~--------~~-~~~~~~~~ 88 (390)
T 3ugv_A 28 LTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVP----------GRAYLEPY--------VP-KAMKYLVP 88 (390)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCC----------EEEEECCS--------CG-GGHHHHHH
T ss_pred CEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCE----------EEEEeecC--------CC-chHHHHHH
Confidence 89999999877 23444 36799999999 886 99997431 11 23445556
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
+.+.++|.|+|+||.++ ++|+.|.+.....+.+++..+|++|||+||||+.||.+|+|||+||| |. ++++|+ |
T Consensus 89 ~~~~l~p~liG~d~~~~-~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~-~~~v~~--y 161 (390)
T 3ugv_A 89 ALHDMSDMLAGQPLAPA-EIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLLG---GT-PGSVKA--Y 161 (390)
T ss_dssp HHHHHHHHHTTSBCCHH-HHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CC-CCEEEE--E
T ss_pred HHHHHHHHHCCCCcchH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CC-CCceEE--E
Confidence 77789999999999999 99999986321111234556899999999999999999999999999 64 356665 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHH---HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE---VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLL 267 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~---~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v 267 (394)
.++ |++.. .+. +...+++.++..+ ||+++| .|.| .++.+.+.+++++|
T Consensus 162 ~s~-g~~~~---~~~---------e~~~~~a~~~~~~~~~G~~~iK----lKvG------------~~~~~~d~~~v~av 212 (390)
T 3ugv_A 162 NSN-GLWLK---SPA---------EVAAEAVELKAEGQGTGFKGLK----LRMG------------RDDPAVDIETAEAV 212 (390)
T ss_dssp ECS-CCCSS---CHH---------HHHHHHHHHHHTTCTTCCSEEE----EECC------------CSSHHHHHHHHHHH
T ss_pred Eec-ccccC---CCH---------HHHHHHHHHHHHhhhCCCcEEE----EecC------------CCCHHHHHHHHHHH
Confidence 543 23210 011 2235666777777 888887 5533 12233445666666
Q ss_pred HHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHH
Q 016156 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347 (394)
Q Consensus 268 ~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~ 347 (394)
|+++ | +++.|++|+ |+.| +.++++++. +.++++++.|||||++++|+++++
T Consensus 213 R~a~---G--~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~ 263 (390)
T 3ugv_A 213 WDAV---G--RDTALMVDF--------NQGL---------------DMAEAMHRT-RQIDDLGLEWIEEPVVYDNFDGYA 263 (390)
T ss_dssp HHHH---C--TTSEEEEEC--------TTCC---------------CHHHHHHHH-HHHTTSCCSEEECCSCTTCHHHHH
T ss_pred HHHh---C--CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHHHhhCCCEEECCCCcccHHHHH
Confidence 6666 3 489999999 5655 467888754 558999999999999999999999
Q ss_pred HHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 348 SLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 348 ~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 264 ~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~ 309 (390)
T 3ugv_A 264 QLRHDLKTPLMIGEN-FYGPREMHQALQAGACDLVMPDFMRIGGVSG 309 (390)
T ss_dssp HHHHHCSSCEEECTT-CCSHHHHHHHHHTTCCSEECCBHHHHTHHHH
T ss_pred HHHHhcCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 999999999999997 5789999999999999999999999999974
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=327.05 Aligned_cols=262 Identities=18% Similarity=0.266 Sum_probs=208.6
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.+ ++++.|+|+|+ |++ |+||+... +.|.+++..++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~~~~~~~~~~ 65 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAV----------GWGEAPPT-----LVITGDSMDSIESA 65 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECCC-----TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCE----------EEEEecCC-----CCcCCCCHHHHHHH
Confidence 78999998876 22433 35799999999 876 99998542 35678888888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|.+.. .+ ..+|++|||+||||+.||.+|+|||+||| | .++++|++
T Consensus 66 l~~~l~~~l~g~~~~~~~~~~~~l~~~~-~~-----~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g-~~~~v~~~-- 133 (366)
T 1tkk_A 66 IHHVLKPALLGKSLAGYEAILHDIQHLL-TG-----NMSAKAAVEMALYDGWAQMCGLPLYQMLG---G-YRDTLETD-- 133 (366)
T ss_dssp HHHTHHHHHTTCBGGGHHHHHHHHHHSS-SS-----CHHHHHHHHHHHHHHHHHHTTSBHHHHHT---C-CCSEEEBC--
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHh-cC-----CHHHHHHHHHHHHHHHHHHcCCCHHHHhC---C-CCCceeee--
Confidence 9888999999999999999999998631 11 24899999999999999999999999999 7 46778875
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++++ +.++ ..+++.++..+||+.+| .|.| . .+.+.+.+++++||++
T Consensus 134 ~~~~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~d~~~v~avr~a 181 (366)
T 1tkk_A 134 YTVSVN-------SPEE---------MAADAENYLKQGFQTLK----IKVG-------K-----DDIATDIARIQEIRKR 181 (366)
T ss_dssp EEECSC-------CHHH---------HHHHHHHHHHHTCCEEE----EECC-------S-----SCHHHHHHHHHHHHHH
T ss_pred EEecCC-------CHHH---------HHHHHHHHHHcCCCeEE----EEeC-------C-----CCHHHHHHHHHHHHHH
Confidence 333332 1222 35667777777888887 4533 1 1233345666666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc--CCceeeeCCCCCCCHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD--FPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~--~~i~~iEdPl~~~D~~~~~~ 348 (394)
+ | +++.|++|+ |+.| +.++++++.. .+++ |++.|||||++++|+++|++
T Consensus 182 ~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~~~i~~iEqP~~~~d~~~~~~ 232 (366)
T 1tkk_A 182 V---G--SAVKLRLDA--------NQGW---------------RPKEAVTAIR-KMEDAGLGIELVEQPVHKDDLAGLKK 232 (366)
T ss_dssp H---C--SSSEEEEEC--------TTCS---------------CHHHHHHHHH-HHHHTTCCEEEEECCSCTTCHHHHHH
T ss_pred h---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHhhcCCCceEEECCCCcccHHHHHH
Confidence 5 3 489999999 5655 5678888655 5899 99999999999999999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 233 l~~~~~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 277 (366)
T 1tkk_A 233 VTDATDTPIMADES-VFTPRQAFEVLQTRSADLINIKLMKAGGISG 277 (366)
T ss_dssp HHHHCSSCEEECTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHhhCCCCEEEcCC-CCCHHHHHHHHHhCCCCEEEeehhhhcCHHH
Confidence 99999999999997 5789999999999999999999999999974
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=331.82 Aligned_cols=266 Identities=17% Similarity=0.258 Sum_probs=203.5
Q ss_pred ceEEEEEEEEEe--------cCC----------CCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhH
Q 016156 44 AKVKSVKARQII--------DSR----------GNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~----------g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~ 104 (394)
|+|++|+.+.+- .+. .+++++|+|+|+ |++ |+||+... .+.+
T Consensus 26 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~------~~~~--- 86 (398)
T 2pp0_A 26 DRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFE----------GVGFSYSK------RAGG--- 86 (398)
T ss_dssp CCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCE----------EEEEEEES------STTH---
T ss_pred CeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCE----------EEEEecCc------cchH---
Confidence 899999998882 111 146899999999 886 99998321 1222
Q ss_pred HHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccc
Q 016156 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELV 184 (394)
Q Consensus 105 ~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~ 184 (394)
+.....+ +.++|.|+|+||.+++++|+.|.+.....+.++++.+|++|||+||||+.||.+|+|||+||| |. +++
T Consensus 87 ~~~~~~~-~~l~p~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLG---g~-~~~ 161 (398)
T 2pp0_A 87 QGIYAHA-KEIADNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLG---AH-RDS 161 (398)
T ss_dssp HHHHHHH-HHHGGGGTTSCTTCHHHHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHC---CS-CSE
T ss_pred HHHHHHH-HHHHHHHcCCCchhHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCC
Confidence 2333334 469999999999999999999987543223345678999999999999999999999999999 65 455
Q ss_pred cceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHH
Q 016156 185 MPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGL 264 (394)
Q Consensus 185 iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l 264 (394)
+| +|+++ ||.+. .+.++ ..+++.++..+||+.+| .|.| . ++.+.+.+.+
T Consensus 162 vp--~y~~~-g~~~~---~~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~d~e~v 210 (398)
T 2pp0_A 162 VQ--CYNTS-GGFLH---TPLDQ---------VLKNVVISRENGIGGIK----LKVG-------Q-----PNCAEDIRRL 210 (398)
T ss_dssp EE--EEECT-TSCTT---SCHHH---------HHHHHHHHHHTTCSCEE----EECC-------C-----SCHHHHHHHH
T ss_pred ee--EEEec-CCcCC---CCHHH---------HHHHHHHHHHhCCCeEE----EecC-------C-----CCHHHHHHHH
Confidence 55 57754 33221 12333 35677777777888887 4432 1 2233346667
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHH
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~ 344 (394)
+.||+++ | +|+.|++|+ |+.| +.+++++++.. +++|+|.|||||++++|++
T Consensus 211 ~avR~av---G--~d~~l~vDa--------n~~~---------------~~~~ai~~~~~-l~~~~i~~iEqP~~~~d~~ 261 (398)
T 2pp0_A 211 TAVREAL---G--DEFPLMVDA--------NQQW---------------DRETAIRMGRK-MEQFNLIWIEEPLDAYDIE 261 (398)
T ss_dssp HHHHHHH---C--SSSCEEEEC--------TTCS---------------CHHHHHHHHHH-HGGGTCSCEECCSCTTCHH
T ss_pred HHHHHHc---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHHH-HHHcCCceeeCCCChhhHH
Confidence 7777766 3 489999999 5655 56788886554 8999999999999999999
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++|++++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 262 ~~~~l~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite 310 (398)
T 2pp0_A 262 GHAQLAAALDTPIATGEML-TSFREHEQLILGNASDFVQPDAPRVGGISP 310 (398)
T ss_dssp HHHHHHHHCSSCEEECTTC-CSHHHHHHHHHTTCCSEECCCHHHHTSHHH
T ss_pred HHHHHHhhCCCCEEecCCc-CCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 9999999999999999974 689999999999999999999999999984
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=331.08 Aligned_cols=261 Identities=16% Similarity=0.209 Sum_probs=202.4
Q ss_pred ceEEEEEEEEEe--------cCCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
|+|++|+++.+- .+.| ...+.|+|+|+ |++ |+||+.... .|. ++...+..
T Consensus 8 mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~-----~~~-e~~~~~~~ 71 (385)
T 3i6e_A 8 QKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAE----------GFGEASPWA-----VFT-GTPEASYA 71 (385)
T ss_dssp SBEEEEEEEEEECCC--------------CEEEEEEEEETTSCE----------EEEEECCCT-----TTT-CCHHHHHH
T ss_pred cEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCE----------EEEeeccCC-----CcC-CCHHHHHH
Confidence 899999998882 2222 24699999999 986 999985421 222 56777788
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
.|++.++|.|+|+||.+++++|+.|++.- . + ..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 72 ~i~~~l~p~l~G~d~~~~~~~~~~l~~~~--~--~--~~~A~said~ALwDl~gk~~g~Pl~~LLG---g~~r~~v~~-- 140 (385)
T 3i6e_A 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAV--A--H--CTEAKAALDSALLDLAGRISNLPVWALLG---GKCRDTIPL-- 140 (385)
T ss_dssp HHHHTTHHHHTTCBGGGHHHHHHHHHHHS--S--S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEEEB--
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHh--c--C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---cccCCceEE--
Confidence 88888999999999999999999998731 1 1 24799999999999999999999999999 776778876
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
|.+++.+ +. +..++++.+...+||+++| .|.| ..+.+.+.+++++||+
T Consensus 141 ~~t~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----~Kvg------------~~~~~~d~~~v~avR~ 188 (385)
T 3i6e_A 141 SCSIANP-------DF---------DADIALMERLRADGVGLIK----LKTG------------FRDHAFDIMRLELIAR 188 (385)
T ss_dssp EEEECCS-------SH---------HHHHHHHHHHHHHTCCEEE----EECS------------SSCHHHHHHHHHHHHH
T ss_pred EEEcCCC-------CH---------HHHHHHHHHHHHcCCCEEE----EecC------------CCCHHHHHHHHHHHHH
Confidence 4433221 11 1235566677777888888 5533 1122233445555555
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ +++.|++|+ |+.|+ .++++++ .+.+++|++.|||||++++|++++++|
T Consensus 189 a~------~~~~l~vDa--------n~~~~---------------~~~A~~~-~~~L~~~~i~~iEqP~~~~d~~~~~~l 238 (385)
T 3i6e_A 189 DF------PEFRVRVDY--------NQGLE---------------IDEAVPR-VLDVAQFQPDFIEQPVRAHHFELMARL 238 (385)
T ss_dssp HC------TTSEEEEEC--------TTCCC---------------GGGHHHH-HHHHHTTCCSCEECCSCTTCHHHHHHH
T ss_pred hC------CCCeEEEEC--------CCCCC---------------HHHHHHH-HHHHHhcCCCEEECCCCcccHHHHHHH
Confidence 43 689999999 67664 4577775 455899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 239 ~~~~~iPIa~dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 282 (385)
T 3i6e_A 239 RGLTDVPLLADES-VYGPEDMVRAAHEGICDGVSIKIMKSGGLTR 282 (385)
T ss_dssp HTTCSSCEEESTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHhCCCCEEEeCC-cCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence 9999999999997 5789999999999999999999999999984
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=335.93 Aligned_cols=273 Identities=21% Similarity=0.245 Sum_probs=202.2
Q ss_pred hcCCcceEEEEEEEEEe------------------------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeee
Q 016156 39 TASSSAKVKSVKARQII------------------------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEAL 89 (394)
Q Consensus 39 ~f~~~~~I~~V~~r~v~------------------------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~ 89 (394)
|| +.|||++|+++.+- +++| +.++.|+|+|| |++ |+||+.
T Consensus 19 ~~-~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~----------G~GE~~ 87 (412)
T 3stp_A 19 YF-QSMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTI----------GIGNAA 87 (412)
T ss_dssp -----CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCE----------EEEEEC
T ss_pred ee-eccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCE----------EEEecc
Confidence 45 34999999998772 1222 34699999999 986 999973
Q ss_pred eeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCCh
Q 016156 90 ELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVP 169 (394)
Q Consensus 90 ~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~P 169 (394)
. .+ ..+...|++.|+|.|+|+||.+++++|+.|++.....+.+++..+|++|||+||||+.||.+|+|
T Consensus 88 ~---------~~---~~~~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~g~~~~A~saiD~ALwDl~gK~~g~P 155 (412)
T 3stp_A 88 L---------AP---SVVKKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKP 155 (412)
T ss_dssp S---------SH---HHHHHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHTTCB
T ss_pred C---------CH---HHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCC
Confidence 2 11 24556688889999999999999999999986321111224557899999999999999999999
Q ss_pred hHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Q 016156 170 LYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGD 249 (394)
Q Consensus 170 Ly~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~ 249 (394)
||+||| |..++++|+ |++. . ... +. +...+++.+...+||+.+| .|.|..+.
T Consensus 156 v~~LLG---G~~r~~v~~--y~s~--~-~~~---~~---------e~~~~~a~~~~~~Gf~~iK----ik~g~gp~---- 207 (412)
T 3stp_A 156 VFKLLG---GRTKDRIPV--YYSK--L-YAG---SI---------EAMQKEAEEAMKGGYKAFK----SRFGYGPK---- 207 (412)
T ss_dssp HHHHHT---CCSSSSEEE--EEEC--C-CSC---CH---------HHHHHHHHHHHTTTCSEEE----EECCCCGG----
T ss_pred HHHhcC---CCCCceEEE--EEEe--c-CCC---CH---------HHHHHHHHHHHHcCCCEEE----EecccCcc----
Confidence 999999 776778776 4431 1 110 11 2235566666667788887 55431100
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC
Q 016156 250 EGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF 329 (394)
Q Consensus 250 ~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~ 329 (394)
+|+ .+++.+.+++++||+++ | +|+.|++|+ |+.| +.++++++ .+.++++
T Consensus 208 dg~--~~~~~die~v~avReav---G--~d~~L~vDa--------N~~~---------------~~~~Ai~~-~~~Le~~ 256 (412)
T 3stp_A 208 DGM--PGMRENLKRVEAVREVI---G--YDNDLMLEC--------YMGW---------------NLDYAKRM-LPKLAPY 256 (412)
T ss_dssp GHH--HHHHHHHHHHHHHHHHH---C--SSSEEEEEC--------TTCS---------------CHHHHHHH-HHHHGGG
T ss_pred ccc--chHHHHHHHHHHHHHHc---C--CCCeEEEEC--------CCCC---------------CHHHHHHH-HHHHHhc
Confidence 010 11223455666666665 3 489999999 5655 56788875 4558999
Q ss_pred CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 330 PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 330 ~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++.|||||++++|++++++|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 257 ~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~li~~~a~D~v~ik~~~~GGit~ 320 (412)
T 3stp_A 257 EPRWLEEPVIADDVAGYAELNAMNIVPISGGEH-EFSVIGCAELINRKAVSVLQYDTNRVGGITA 320 (412)
T ss_dssp CCSEEECCSCTTCHHHHHHHHHTCSSCEEECTT-CCSHHHHHHHHHTTCCSEECCCHHHHTHHHH
T ss_pred CCCEEECCCCcccHHHHHHHHhCCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEecChhhcCCHHH
Confidence 999999999999999999999999999999997 5689999999999999999999999999984
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=332.79 Aligned_cols=264 Identities=18% Similarity=0.230 Sum_probs=203.8
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+++.+- .+.| +..+.|+|+ + |++ |+||+.... .++|.+++.+.+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~----------G~GE~~~~~---~~~~~~e~~~~~~~~ 66 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLV----------GVGEGGSVG---GPVWSAECAETIKII 66 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCB----------CCEECCCBT---TBTTSSCCHHHHHHH
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcE----------EEEccccCC---CCCCCCCCHHHHHHH
Confidence 789999887772 1222 457999999 8 886 999975321 135777888888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|++.. . + ..+|++|||+||||+.||.+|+|||+||| |..++++|+ |
T Consensus 67 i~~~l~p~l~G~d~~~~~~~~~~l~~~~--~--g--~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~~v~~--~ 135 (370)
T 1chr_A 67 VERYLAPHLLGTDAFNVSGALQTMARAV--T--G--NASAKAAVEMALLDLKARALGVSIAELLG---GPLRSAIPI--A 135 (370)
T ss_dssp HHHHTHHHHTTSCTTCHHHHHHHHHHHC--S--S--CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEB--E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHh--c--C--cHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCceeE--E
Confidence 9889999999999999999999998732 1 1 14799999999999999999999999999 777788887 3
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
.+++.|. . ...++++.+... +||+++| .|.| ..+.+.+.+++++||+
T Consensus 136 ~t~~~~~-------~---------~~~~~~~~~~~~~~G~~~~K----iKvg------------~~~~~~d~~~v~avR~ 183 (370)
T 1chr_A 136 WTLASGD-------T---------KRDLDSAVEMIERRRHNRFK----VKLG------------FRSPQDDLIHMEALSN 183 (370)
T ss_dssp EEECSSS-------H---------HHHHHHHHHHHHTTCCCEEE----EECS------------SSCSHHHHHHHHHHHH
T ss_pred EEecCCC-------c---------HHHHHHHHHHHHHCCCCEEE----EecC------------CCCHHHHHHHHHHHHH
Confidence 3333221 0 112455555555 5677776 4533 1223334555555555
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | .++.|++|+ |+.|+ .++++++ .+.+++|++.|||||++++|++++++|
T Consensus 184 ~~---g--~~~~l~vDa--------n~~~~---------------~~~a~~~-~~~l~~~~i~~iEqP~~~~~~~~~~~l 234 (370)
T 1chr_A 184 SL---G--SKAYLRVDV--------NQAWD---------------EQVASVY-IPELEALGVELIEQPVGRENTQALRRL 234 (370)
T ss_dssp HS---S--TTCCEEEEC--------TTCCC---------------TTHHHHH-THHHHTTTEEEEECCSCTTCHHHHHHH
T ss_pred hc---C--CCCEEEEEC--------CCCCC---------------HHHHHHH-HHHHHhcCCCEEECCCCcccHHHHHHH
Confidence 54 3 379999999 67664 4577775 455899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 235 ~~~~~iPia~dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 278 (370)
T 1chr_A 235 SDNNRVAIMADES-LSTLASAFDLARDRSVDVFSLKLCNMGGVSA 278 (370)
T ss_dssp HHHSCSEEEESSS-CCSHHHHHHHHTTTSCSEEEECTTTSCSHHH
T ss_pred HhhCCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEECccccCCHHH
Confidence 9999999999997 5779999999999999999999999999984
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=331.75 Aligned_cols=262 Identities=15% Similarity=0.206 Sum_probs=202.4
Q ss_pred ceEEEEEEEEEe--------cCCC----Cc-eEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NP-TVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~-tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
|+|++|+++.+- .+.| +. .+.|+|+|+ |++ |+||+.... .|. ++.+.+.+
T Consensus 6 ~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~-----~~~-e~~~~~~~ 69 (377)
T 3my9_A 6 SVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIV----------GWGEAAPWE-----VFT-GTPEAAFS 69 (377)
T ss_dssp CBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCE----------EEEEECCC-----------CHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCE----------EEEecccCC-----CcC-CCHHHHHH
Confidence 899999998882 2333 35 899999999 986 999985421 122 56777778
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
.|++.++|.|+|+||.+++++|+.|++.- . + ..+|++|||+||||+.||.+|+|||+||| |..++++|++
T Consensus 70 ~i~~~l~p~liG~d~~~~~~~~~~l~~~~--~--~--~~~A~said~AlwDl~gk~~g~Pl~~LLG---g~~r~~v~~~- 139 (377)
T 3my9_A 70 ALDIYLRPLILGAPIKRVRELMARMDKML--V--G--HGEAKAAVEMALLDILGKATGLSVADLLG---GRVRDRIPLS- 139 (377)
T ss_dssp HHHTTTHHHHTTCBTTCHHHHHHHHHHHS--C--S--CHHHHHHHHHHHHHHHHHHHTCBTTGGGT---CCSCSEEEBC-
T ss_pred HHHHHHHHHhCCCCcCCHHHHHHHHHHHh--c--C--chhHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCeEEEE-
Confidence 88888999999999999999999998731 1 1 24799999999999999999999999999 7777788864
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
.+++.+ +. +..++++.+...+||+++| .|.| ..+.+.+.+++++||+
T Consensus 140 -~t~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----~Kvg------------~~~~~~d~~~v~avR~ 186 (377)
T 3my9_A 140 -FSIADP-------DF---------DADLERMRAMVPAGHTVFK----MKTG------------VKPHAEELRILETMRG 186 (377)
T ss_dssp -EEECCS-------SH---------HHHHHHHHHHTTTTCCEEE----EECS------------SSCHHHHHHHHHHHHH
T ss_pred -EecCCC-------CH---------HHHHHHHHHHHHcCCCEEE----EccC------------CCcHHHHHHHHHHHHH
Confidence 333211 11 1235566666667888887 5533 1223334566666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +++.|++|+ |+.|+ .++++++ .+.+++|++.|||||++++|++++++|
T Consensus 187 ~~---g--~~~~l~vDa--------n~~~~---------------~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l 237 (377)
T 3my9_A 187 EF---G--ERIDLRLDF--------NQALT---------------PFGAMKI-LRDVDAFRPTFIEQPVPRRHLDAMAGF 237 (377)
T ss_dssp HH---G--GGSEEEEEC--------TTCCC---------------TTTHHHH-HHHHHTTCCSCEECCSCTTCHHHHHHH
T ss_pred Hh---C--CCCeEEEeC--------CCCcC---------------HHHHHHH-HHHHhhcCCCEEECCCCccCHHHHHHH
Confidence 66 3 489999999 67665 3466664 455899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 238 ~~~~~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~ 281 (377)
T 3my9_A 238 AAALDTPILADES-CFDAVDLMEVVRRQAADAISVKIMKCGGLMK 281 (377)
T ss_dssp HHHCSSCEEESTT-CSSHHHHHHHHHHTCCSEEECCHHHHTSHHH
T ss_pred HHhCCCCEEECCc-cCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence 9999999999997 5789999999999999999999999999974
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=328.70 Aligned_cols=277 Identities=15% Similarity=0.142 Sum_probs=197.9
Q ss_pred ceEEEEEEEEEec---CCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH-----hHHh
Q 016156 44 AKVKSVKARQIID---SRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN-----INDI 114 (394)
Q Consensus 44 ~~I~~V~~r~v~~---~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~-----I~~~ 114 (394)
|||++|+++.+-- ...+.++.|+|+|| |++ |+||+... ...+.++++. +.+.
T Consensus 5 mkI~~i~~~~v~~p~~~~~~~~~~V~v~td~G~~----------G~GE~~~~---------~~~~~~~~~~~~~~~~~~~ 65 (394)
T 3mqt_A 5 ANIVSVEFIPVNVAATNWSENTVIVKVTDENGVY----------GLGEADGP---------PECMKAFSEIENEHKWLNN 65 (394)
T ss_dssp CCEEEEEEEEEECC-----CEEEEEEEEETTSCE----------EEEEECSC---------HHHHHHHHTCCCCBTTBCC
T ss_pred CeEeEEEEEEEecCCCCCCccEEEEEEEECCCCE----------EEEEECCc---------HHHHHHHHhcccchhhHHH
Confidence 8999999988832 12356899999999 986 99997321 1111111111 1234
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeec
Q 016156 115 LGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVIN 194 (394)
Q Consensus 115 l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~ 194 (394)
|+|.|+|+||.+++++|+.|++.....+.+++..+|++|||+||||++||.+|+|||+||| |..++++|+ |.+++
T Consensus 66 l~p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~s~~ 140 (394)
T 3mqt_A 66 IKEAVIGRDPLEFRANYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMG---GAQKAQLTP--YFTLY 140 (394)
T ss_dssp GGGGTTTSCTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCCSSSBCC--EEECC
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhhhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcC---CCCCCeEEE--EEEec
Confidence 9999999999999999999987422222234556899999999999999999999999999 777778776 44432
Q ss_pred CCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016156 195 GGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKE-KYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEK 273 (394)
Q Consensus 195 gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~-k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ 273 (394)
... +...+.++. + ....+++.+...+||+++| . |.| .. ..+.+.+.+++++||+++
T Consensus 141 ~~~--~~~~~~~~~-i----~~~~~~a~~~~~~G~~~~K----~~k~g-------~~---~~~~~~d~~~v~avR~a~-- 197 (394)
T 3mqt_A 141 PSV--AADATLSEI-V----EAYKPLIAKAKERGAKAVK----VCIIP-------ND---KVSDKEIVAYLRELREVI-- 197 (394)
T ss_dssp CCC--CTTCCHHHH-H----HHHHHHHHHHHHTTCSEEE----EECCC-------CT---TSCHHHHHHHHHHHHHHH--
T ss_pred CCC--CCCcchhhh-H----HHHHHHHHHHHHcCCCEEE----ecccC-------CC---ccCHHHHHHHHHHHHHHh--
Confidence 101 000000100 0 0123355556666777777 4 433 10 012333455666666665
Q ss_pred cCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc
Q 016156 274 AGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV 353 (394)
Q Consensus 274 ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~ 353 (394)
| +|+.|++|+ |+.|+ +.++++++ .+.++++++.|||||++++|++++++|++++
T Consensus 198 -G--~d~~l~vDa--------n~~~~--------------~~~~A~~~-~~~L~~~~i~~iEeP~~~~~~~~~~~l~~~~ 251 (394)
T 3mqt_A 198 -G--WDMDMMVDC--------LYRWT--------------DWQKARWT-FRQLEDIDLYFIEACLQHDDLIGHQKLAAAI 251 (394)
T ss_dssp -C--SSSEEEEEC--------TTCCS--------------CHHHHHHH-HHHTGGGCCSEEESCSCTTCHHHHHHHHHHS
T ss_pred -C--CCCeEEEEC--------CCCCC--------------CHHHHHHH-HHHHhhcCCeEEECCCCcccHHHHHHHHhhC
Confidence 3 489999999 55441 46788885 4558999999999999999999999999999
Q ss_pred CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 354 DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 354 ~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 252 ~iPIa~dE~-~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 291 (394)
T 3mqt_A 252 NTRLCGAEM-STTRFEAQEWLEKTGISVVQSDYNRCGGVTE 291 (394)
T ss_dssp SSEEEECTT-CCHHHHHHHHHHHHCCSEECCCTTTSSCHHH
T ss_pred CCCEEeCCC-cCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 999999997 5679999999999999999999999999984
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=323.16 Aligned_cols=266 Identities=16% Similarity=0.190 Sum_probs=203.0
Q ss_pred ceEEEEEEEEE--------ecCCCC-----ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRGN-----PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g~-----~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
|+|++|+.+.+ .++.+. ++++|+|+|+ |++ |+||+... +++..++.+
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~----------G~Ge~~~~---------g~~~~~~~~ 62 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGAT----------GLGYTYTV---------NHGGAAVAT 62 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCE----------EEEEEEEE---------SSSHHHHHH
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCE----------EEEeecCC---------CCchHHHHH
Confidence 58999998777 234332 3699999999 886 99998542 122445666
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
.|++.++|.|+|+||.+++++|+.|.+.....+.+++..+|++|||+||||+.||.+|+|||+||| |. ++++| +
T Consensus 63 ~i~~~l~~~l~G~d~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~~~v~--~ 136 (371)
T 2ovl_A 63 MVDKDLRGCLLGADAEQIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFG---GY-DPVVP--V 136 (371)
T ss_dssp HHHHTTHHHHTTSCTTCHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CC-CSEEE--E
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCCee--E
Confidence 688889999999999999999999987321112345667899999999999999999999999999 64 45555 5
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
|++ +|.+. .+.++ ..+++.++..+||+.+| .|.| . .+++.+.+.+++||+
T Consensus 137 y~~--~~~~~---~~~e~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~avr~ 186 (371)
T 2ovl_A 137 YAG--GIDLE---LPVAD---------LKTQADRFLAGGFRAIK----MKVG-------R-----PDLKEDVDRVSALRE 186 (371)
T ss_dssp EEE--CCBTT---SCHHH---------HHHHHHHHHHTTCSCEE----EECC-------C-----SSHHHHHHHHHHHHH
T ss_pred EEe--CCCcC---CCHHH---------HHHHHHHHHHcCCCEEE----ECCC-------C-----CCHHHHHHHHHHHHH
Confidence 654 34321 12233 25566666677787777 4433 1 123334566666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +|+.|++|+ |+.| +.++++++.. .+++|++.|||||++++|+++|++|
T Consensus 187 a~---G--~d~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l 237 (371)
T 2ovl_A 187 HL---G--DSFPLMVDA--------NMKW---------------TVDGAIRAAR-ALAPFDLHWIEEPTIPDDLVGNARI 237 (371)
T ss_dssp HH---C--TTSCEEEEC--------TTCS---------------CHHHHHHHHH-HHGGGCCSEEECCSCTTCHHHHHHH
T ss_pred Hh---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHHhcCCCEEECCCCcccHHHHHHH
Confidence 66 3 489999999 5545 5678888654 5899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 238 ~~~~~iPI~~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~ 281 (371)
T 2ovl_A 238 VRESGHTIAGGEN-LHTLYDFHNAVRAGSLTLPEPDVSNIGGYTT 281 (371)
T ss_dssp HHHHCSCEEECTT-CCSHHHHHHHHHHTCCSEECCCTTTTTSHHH
T ss_pred HhhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEeeCccccCCHHH
Confidence 9999999999997 5679999999999999999999999999974
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=325.59 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=201.7
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|+|++|+.+.+- .+.+ +++++|+|+|+|++ |+||+.. + ..+...|
T Consensus 6 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~tdG~~----------G~Ge~~~----------~---~~~~~~i 62 (372)
T 3cyj_A 6 PRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGGGRK----------GLGYTYG----------D---VSVGRFV 62 (372)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEE----------EEEEEES----------C---THHHHHH
T ss_pred CEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeCCcE----------EEEeccC----------c---HHHHHHH
Confidence 899999987771 2322 35689999998765 9999742 1 2455567
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHh-cCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEI-DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~-~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
++.++|.|+|+||.+++++|+.|.+. +.+++ ++++.+|++|||+||||+.||.+|+|||+||| |. ++++|+ |
T Consensus 63 ~~~l~~~l~g~d~~~~~~i~~~l~~~~~~~~~-~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~-~~~vp~--~ 135 (372)
T 3cyj_A 63 ESKLAGVAEGSDALSPPAVWARMQAAIRNAGR-PGVGAMAVSAVDIALWDLKARLLGLPLADALP---RF-HAEVPV--Y 135 (372)
T ss_dssp HHHTHHHHTTSBTTCHHHHHHHHHHHTTTTCS-SBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSC---CC-CSSEEE--E
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHhhhHcCCcHHHHhC---CC-CCCceE--E
Confidence 78899999999999999999999873 33333 45677899999999999999999999999999 64 456665 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
++ +|.+. .+.++ ..+++.++..+||+++| .|.| . +.+.+.+++++||++
T Consensus 136 ~~--~g~~~---~~~~~---------~~~~a~~~~~~G~~~~K----iKvG-------~------~~~~d~~~v~avr~a 184 (372)
T 3cyj_A 136 GS--GGFTS---YPLRR---------LQEQLGGWAAAGIPRVK----MKVG-------R------EPEKDPERVRAAREA 184 (372)
T ss_dssp EE--CCCTT---SCHHH---------HHHHHHHHHHTTCCEEE----EECC-------S------SGGGHHHHHHHHHHH
T ss_pred EE--cCCCC---CCHHH---------HHHHHHHHHHcCCCEEE----EcCC-------C------CHHHHHHHHHHHHHH
Confidence 54 33221 11222 35677777788888888 4533 1 334456778887777
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC-CceeeeCCCCCCCHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF-PIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~-~i~~iEdPl~~~D~~~~~~L 349 (394)
+ | +++.|++|+ |+.| +.+++++++.+ +++| +|.|||||++++|+++|++|
T Consensus 185 ~---g--~~~~l~vDa--------N~~~---------------~~~~a~~~~~~-l~~~~~i~~iEqP~~~~d~~~~~~l 235 (372)
T 3cyj_A 185 I---G--ESVELMVDA--------NGAY---------------TRKQALYWAGA-FAREAGISYLEEPVSSEDREGLRLL 235 (372)
T ss_dssp H---C--TTSEEEEEC--------TTCS---------------CHHHHHHHHHH-HHHHHCCCEEECSSCTTCHHHHHHH
T ss_pred h---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHHH-HHhhcCCcEEECCCCcccHHHHHHH
Confidence 6 3 489999999 5655 46788887655 8999 99999999999999999999
Q ss_pred HhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++ +||++||+. .+.++++++ .+++|++|+|++++||||+
T Consensus 236 ~~~~~~~ipIa~dE~~-~~~~~~~~~--~~a~d~i~ik~~~~GGit~ 279 (372)
T 3cyj_A 236 RDRGPGGVAIAAGEYE-WTLPQLHDL--AGCVDILQADVTRCGGITG 279 (372)
T ss_dssp HHHSCTTCEEEECTTC-CSHHHHHHH--HTTCSEEEECTTTTTHHHH
T ss_pred HHhCCCCCCEECCCCc-cCHHHHHHH--hCCCCEEecCchhhCCHHH
Confidence 99998 799999985 568999998 8999999999999999974
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=325.80 Aligned_cols=272 Identities=19% Similarity=0.193 Sum_probs=203.5
Q ss_pred ceEEEEEEEEEe-----------cC-CC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHH
Q 016156 44 AKVKSVKARQII-----------DS-RG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106 (394)
Q Consensus 44 ~~I~~V~~r~v~-----------~~-~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~ 106 (394)
|+|++|+.+.+- .+ .+ ++++.|+|+|+ |++ |+||+. ++. .
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~-----------~~~--~ 57 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQE----------GHSFTA-----------PEI--V 57 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCE----------EEEEEC-----------GGG--G
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCE----------EEEEec-----------Cch--H
Confidence 789999988762 12 22 35789999999 886 999974 111 1
Q ss_pred HHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccc
Q 016156 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMP 186 (394)
Q Consensus 107 a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP 186 (394)
+...|++.++|.|+|+||.+++++|+.|++... ..++++..+|++|||+||||+.||.+|+|||+||| |. ++++|
T Consensus 58 ~~~~i~~~l~~~l~g~d~~~~~~~~~~l~~~~~-~~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~-~~~vp 132 (382)
T 1rvk_A 58 RPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQR-GSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIG---GY-RDKVL 132 (382)
T ss_dssp CHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHT-TTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHC---CS-CSEEE
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhC---CC-CCcce
Confidence 455677789999999999999999999965211 11134567899999999999999999999999999 65 56666
Q ss_pred eeeEEeec-CCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHH
Q 016156 187 VPAFNVIN-GGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLV 265 (394)
Q Consensus 187 ~p~~~~i~-gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~ 265 (394)
+ |+.+. |+.|.++..+.++ ..+++.++..+||+.+| .|.|... +++.++.+.+.+.++
T Consensus 133 ~--~~~~~~g~~~~~~~~~~e~---------~~~~a~~~~~~Gf~~iK----ik~g~~~------~~~~~~~~~~~e~v~ 191 (382)
T 1rvk_A 133 A--YGSIMCGDELEGGLATPED---------YGRFAETLVKRGYKGIK----LHTWMPP------VSWAPDVKMDLKACA 191 (382)
T ss_dssp E--EEEECCCCCCTTTTSSHHH---------HHHHHHHHHHHTCSEEE----EECCCTT------STTCCCHHHHHHHHH
T ss_pred e--cEEeccCccccccCCCHHH---------HHHHHHHHHHCCCCEEE----EcCCcCc------cccccchHHHHHHHH
Confidence 5 54443 4444322112222 35677777777888888 4543110 112223333455566
Q ss_pred HHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHH
Q 016156 266 LLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSS 345 (394)
Q Consensus 266 ~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~ 345 (394)
.||+++ | +|+.|++|+ |+.| +.++++++. +.+++|++.|||||++++|+++
T Consensus 192 avr~a~---g--~d~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i~~iE~P~~~~~~~~ 242 (382)
T 1rvk_A 192 AVREAV---G--PDIRLMIDA--------FHWY---------------SRTDALALG-RGLEKLGFDWIEEPMDEQSLSS 242 (382)
T ss_dssp HHHHHH---C--TTSEEEEEC--------CTTC---------------CHHHHHHHH-HHHHTTTCSEEECCSCTTCHHH
T ss_pred HHHHHh---C--CCCeEEEEC--------CCCC---------------CHHHHHHHH-HHHHhcCCCEEeCCCChhhHHH
Confidence 666655 3 489999999 5544 567888864 5699999999999999999999
Q ss_pred HHHHHhhcCCeEEecCccccC-HHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 346 WASLQSSVDIQLVGDDLLVTN-PKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 346 ~~~L~~~~~i~I~gde~~~~~-~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++|++++++||++||.. .+ +++++++++.+++|++++|++++||||+
T Consensus 243 ~~~l~~~~~iPIa~dE~~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 291 (382)
T 1rvk_A 243 YKWLSDNLDIPVVGPESA-AGKHWHRAEWIKAGACDILRTGVNDVGGITP 291 (382)
T ss_dssp HHHHHHHCSSCEEECSSC-SSHHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred HHHHHhhCCCCEEEeCCc-cCcHHHHHHHHHcCCCCEEeeCchhcCCHHH
Confidence 999999999999999985 56 9999999999999999999999999974
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=325.31 Aligned_cols=266 Identities=11% Similarity=0.136 Sum_probs=202.0
Q ss_pred ceEEEEEEEEEec-------CCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhH
Q 016156 44 AKVKSVKARQIID-------SRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDIL 115 (394)
Q Consensus 44 ~~I~~V~~r~v~~-------~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l 115 (394)
|+|++|+++.+.. +.++++++|+|+|+ |++ |+||+.... +.+ +.+...|++ |
T Consensus 11 MkI~~i~~~~~~p~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~------~~~---~~~~~~i~~-l 70 (391)
T 2qgy_A 11 GKLSRLKIWITDNHLSDDQWSNTKKFIIIKITTEDGIE----------GWGEAFSIN------FRE---KGIAIIIKE-L 70 (391)
T ss_dssp CCEEEEEEEEECCCBCGGGCSBCCCCEEEEEEETTCCE----------EEEEECCCT------TTH---HHHHHHHHH-H
T ss_pred CEEEEEEEEEecCccccccccCCCcEEEEEEEECCCCE----------EEecccCCC------CCh---HHHHHHHHH-H
Confidence 8999999999953 23467899999999 886 999985321 222 344455777 9
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecC
Q 016156 116 GPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVING 195 (394)
Q Consensus 116 ~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~g 195 (394)
+|.|+|+||.+++++|+.|.+++...+++++ .+|++|||+||||+.||.+|+|||+||| |..++++|+ |+ +|
T Consensus 71 ~p~l~G~d~~~~~~i~~~l~~~~~~~~g~~~-~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~~~~~vp~--~~--~g 142 (391)
T 2qgy_A 71 FREISNIPNLSIKSFYNKISLLSDGHRGLDF-SSATSAIEIALWDISGKLKNLPLNSLLT---KSPKPNVPI--YA--TC 142 (391)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHTTCCCHHH-HHHHHHHHHHHHHHHHHHHTSBHHHHHC---SSCCSEEEE--EE--EC
T ss_pred HHHhcCCChhHHHHHHHHHHhhhhhccCchH-HHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCcCCCcce--EE--ec
Confidence 9999999999999999999863322222234 7899999999999999999999999999 755555554 55 33
Q ss_pred CcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 016156 196 GSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAG 275 (394)
Q Consensus 196 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag 275 (394)
+.+.. .+.++ ..+++.++..+||+.+| .|.| ..+ .+.+.+.++.||+++ |
T Consensus 143 ~~~~~--~~~~~---------~~~~a~~~~~~Gf~~vK----ik~g-----------~~~-~~~~~e~v~avR~a~---G 192 (391)
T 2qgy_A 143 WSDLK--KDTND---------YLRQIEKFYGKKYGGIK----IYPM-----------LDS-LSISIQFVEKVREIV---G 192 (391)
T ss_dssp CCSSC--CCHHH---------HHHHHHHHHHTTCSCEE----ECCC-----------CSS-HHHHHHHHHHHHHHH---C
T ss_pred ccCCC--CCHHH---------HHHHHHHHHHcCCCEEE----EccC-----------CCh-HHHHHHHHHHHHHHh---C
Confidence 33211 12222 35566666667777777 3422 111 122355566666665 3
Q ss_pred CCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCC
Q 016156 276 YTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDI 355 (394)
Q Consensus 276 ~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i 355 (394)
+++.|++|+ |+.| +.++++++.. .+++|++.|||||++++|+++|++|++++++
T Consensus 193 --~d~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~i 246 (391)
T 2qgy_A 193 --DELPLMLDL--------AVPE---------------DLDQTKSFLK-EVSSFNPYWIEEPVDGENISLLTEIKNTFNM 246 (391)
T ss_dssp --SSSCEEEEC--------CCCS---------------CHHHHHHHHH-HHGGGCCSEEECSSCTTCHHHHHHHHHHCSS
T ss_pred --CCCEEEEEc--------CCCC---------------CHHHHHHHHH-HHHhcCCCeEeCCCChhhHHHHHHHHhhCCC
Confidence 489999999 5544 5678888654 4899999999999999999999999999999
Q ss_pred eEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 356 QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 356 ~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 247 PIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 284 (391)
T 2qgy_A 247 KVVTGEKQ-SGLVHFRELISRNAADIFNPDISGMGGLID 284 (391)
T ss_dssp CEEECTTC-CSHHHHHHHHHTTCCSEECCBTTTSSCHHH
T ss_pred CEEEcCCc-CCHHHHHHHHHcCCCCEEEECcchhCCHHH
Confidence 99999975 679999999999999999999999999974
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=325.63 Aligned_cols=265 Identities=17% Similarity=0.241 Sum_probs=208.3
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|+|++|+.+.+- .+.+ ++++.|+|+|+|++ |+||+.... .++|.+++...+...|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t~G~~----------G~GE~~~~~---~~~~~~e~~~~~~~~i 67 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKAGGLV----------GIGEGGSVG---GPTWGSESAETIKVII 67 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEE----------EEEEECCST---TTTTSSCCHHHHHHHH
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEECCEE----------EEEEeccCC---CCcccCCCHHHHHHHH
Confidence 789999987761 2222 35789999988765 999975421 1367788888899999
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
++.++|.|+|+||.+++++|+.|.+... ...+|++|||+||||+.||.+|+|||+||| |..++++|++ .
T Consensus 68 ~~~l~~~l~G~d~~~~~~~~~~l~~~~~------~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~v~~~--~ 136 (370)
T 1nu5_A 68 DNYLAPLLVGKDASNLSQARVLMDRAVT------GNLSAKAAIDIALHDLKARALNLSIADLIG---GTMRTSIPIA--W 136 (370)
T ss_dssp HHTHHHHHTTSBTTCHHHHHHHHHHHCS------SCHHHHHHHHHHHHHHHHHHTTCBHHHHHT---CCSCSEEEBC--E
T ss_pred HHhhHHHHcCCCcccHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCcCCceEee--E
Confidence 9999999999999999999999987421 135799999999999999999999999999 7666778775 4
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
+++++ +.++ ..+++.++.. +||+.+| .|.| . .+++.+.+.++.||++
T Consensus 137 ~~~~~-------~~e~---------~~~~a~~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~avr~a 184 (370)
T 1nu5_A 137 TLASG-------DTAR---------DIDSALEMIETRRHNRFK----VKLG-------A-----RTPAQDLEHIRSIVKA 184 (370)
T ss_dssp EECSS-------CHHH---------HHHHHHHHHHTTSCSEEE----EECS-------S-----SCHHHHHHHHHHHHHH
T ss_pred EecCC-------CHHH---------HHHHHHHHHHhCCccEEE----EecC-------C-----CChHHHHHHHHHHHHh
Confidence 44332 1111 2456666666 6787777 4433 1 1233345667776666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.| +.++++++. +.+++|++.|||||++++|+++|++|+
T Consensus 185 ~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1nu5_A 185 V---G--DRASVRVDV--------NQGW---------------DEQTASIWI-PRLEEAGVELVEQPVPRANFGALRRLT 235 (370)
T ss_dssp H---G--GGCEEEEEC--------TTCC---------------CHHHHHHHH-HHHHHHTCCEEECCSCTTCHHHHHHHH
T ss_pred c---C--CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHHHhcCcceEeCCCCcccHHHHHHHH
Confidence 6 3 389999999 5545 567888864 569999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 236 ~~~~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 278 (370)
T 1nu5_A 236 EQNGVAILADES-LSSLSSAFELARDHAVDAFSLKLCNMGGIAN 278 (370)
T ss_dssp HHCSSEEEESTT-CCSHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred HhCCCCEEeCCC-CCCHHHHHHHHHhCCCCEEEEchhhcCCHHH
Confidence 999999999997 5789999999999999999999999999974
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=333.64 Aligned_cols=259 Identities=20% Similarity=0.236 Sum_probs=205.2
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.| +++++|+|+|+ |++ |+||+.... .++|.++++.++...
T Consensus 20 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~~---~~~~~~e~~~~~~~~ 86 (393)
T 1wuf_A 20 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIH----------GYGELEAFP---LPDYTEETLSSAILI 86 (393)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCE----------EEEEECCCS---STTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCE----------EEEEeecCC---CCcccCCCHHHHHHH
Confidence 99999998877 22333 35799999999 876 999985432 136778888888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+|+.+++++|+.|..++ + +.+|++|||+||||+.||.+|+|||+||| | .++++|++.
T Consensus 87 i~~~l~p~l~G~d~~~~~~l~~~l~~~~-----g--~~~a~~aid~AlwDl~gk~~g~Pl~~lLG---g-~~~~v~~~~- 154 (393)
T 1wuf_A 87 IKEQLLPLLAQRKIRKPEEIQELFSWIQ-----G--NEMAKAAVELAVWDAFAKMEKRSLAKMIG---A-TKESIKVGV- 154 (393)
T ss_dssp HHHTTHHHHHHCEESSTTHHHHHHTTSC-----S--CHHHHHHHHHHHHHHHHHHTTSBHHHHTT---C-CCSEEEBCE-
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHcc-----C--chHHHHHHHHHHHHHHHHHhCCcHHHHhC---C-CCCcceeeE-
Confidence 9988999999999999999999996432 1 35799999999999999999999999999 7 467788754
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
+++.+ . +.++ ..+++.++..+||+++| .|.| + +.+.+++++||++
T Consensus 155 -~~g~~----~--~~e~---------~~~~a~~~~~~G~~~~K----iKvg-------------~--~~d~~~v~avr~a 199 (393)
T 1wuf_A 155 -SIGLQ----Q--NVET---------LLQLVNQYVDQGYERVK----LKIA-------------P--NKDIQFVEAVRKS 199 (393)
T ss_dssp -EECCC----S--CHHH---------HHHHHHHHHHHTCCEEE----EECB-------------T--TBSHHHHHHHHTT
T ss_pred -EeCCC----C--CHHH---------HHHHHHHHHHHhhHhhe----eccC-------------h--HHHHHHHHHHHHH
Confidence 33211 0 1222 35677777778888888 4422 1 1234556555554
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ +++.|++|+ |+.|+ .+++ +++ +.+++|+|.|||||++++|+++|++|+
T Consensus 200 ~------~~~~l~vDa--------N~~~~---------------~~~a-~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~ 248 (393)
T 1wuf_A 200 F------PKLSLMADA--------NSAYN---------------REDF-LLL-KELDQYDLEMIEQPFGTKDFVDHAWLQ 248 (393)
T ss_dssp C------TTSEEEEEC--------TTCCC---------------GGGH-HHH-HTTGGGTCSEEECCSCSSCSHHHHHHH
T ss_pred c------CCCEEEEEC--------CCCCC---------------HHHH-HHH-HHHHhCCCeEEECCCCCcCHHHHHHHH
Confidence 3 689999999 67664 4466 654 569999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 249 ~~~~ipIa~dE~-~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~ 291 (393)
T 1wuf_A 249 KQLKTRICLDEN-IRSVKDVEQAHSIGSCRAINLKLARVGGMSS 291 (393)
T ss_dssp TTCSSEEEECTT-CCSHHHHHHHHHHTCCSEEEECTGGGTSHHH
T ss_pred HhCCCCEEECCC-cCCHHHHHHHHHhCCCCEEEeChhhhCCHHH
Confidence 999999999997 5789999999999999999999999999984
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=329.65 Aligned_cols=287 Identities=11% Similarity=0.114 Sum_probs=196.1
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|++..+ . .....+.|+|+|| |++ |+||+. +.++++. ..+.+.|+|.|+|+
T Consensus 1 MkIt~ie~~~~-~-~~~~~~~V~v~td~G~~----------G~GE~~---------~~~~~~~---~~i~~~l~p~liG~ 56 (400)
T 4dxk_A 1 MKITKLETVRV-A-ERTNLLWVLVHTDEGIT----------GLGETF---------FGAETVE---TYVHEYIAPRVIGR 56 (400)
T ss_dssp CCEEEEEEEEE-T-TSTTEEEEEEEETTSCC----------EEEEEE---------SCHHHHH---HHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEE-C-CCCCEEEEEEEECCCCE----------EEEcCC---------CCccHHH---HHHHHHHHHHhCCC
Confidence 89999998777 3 3456799999999 886 999942 2333333 34556699999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEe-ecCCcCCCC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNV-INGGSHAGN 201 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~-i~gG~~~~~ 201 (394)
||.+++++|+.|..+.+ .+.+++..+|++|||+||||++||.+|+|||+||| |..++++|++.+.. +.|..+...
T Consensus 57 dp~~~~~~~~~~~~~~~-~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~yas~~~~~~~~~~~~ 132 (400)
T 4dxk_A 57 DPLQIDLLAQDLVGYLG-FRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLG---GFSRREIRTYNTCAGTEYIKKATG 132 (400)
T ss_dssp CTTCHHHHHHHHCCSSS-CSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSCEEEEBC------------
T ss_pred CcchHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhC---CCccCceeEEEecccccccccccc
Confidence 99999999999921211 12345667899999999999999999999999999 77778888753211 111100000
Q ss_pred --------CCc-ccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC--CCCChHHHHHHHHHH
Q 016156 202 --------NLA-MQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAP--NVQDNREGLVLLTDA 270 (394)
Q Consensus 202 --------~l~-~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~--~~~~~~~~l~~v~~A 270 (394)
... .++. ..-......+.+.++..+||+++| .|.|... ..++.+++.+ +++.+.+++++||++
T Consensus 133 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~a~~~~~~G~~~~K----ik~g~~~-~~~~~~g~~~~~~~~~d~~~v~avR~a 206 (400)
T 4dxk_A 133 QQTANYGLSGGKDYDD-LNGFLHRADELAHSLLEDGITAMK----IWPFDAA-AEKTRGQYISMPDLKSALEPFEKIRKA 206 (400)
T ss_dssp -----------------------CHHHHHHHHHHTTCCEEE----ECTTHHH-HHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchh-cccccccHHHHHHHHHHhCCCEEE----EcCCCcc-ccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 000 0000 000000012334455566788877 4422000 0000011111 122234556666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|+
T Consensus 207 ~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEeP~~~~~~~~~~~l~ 257 (400)
T 4dxk_A 207 V---G--DKMDIMVEF--------HSMW---------------QLLPAMQI-AKALTPYQTFWHEDPIKMDSLSSLTRYA 257 (400)
T ss_dssp H---G--GGSEEEEEC--------TTCB---------------CHHHHHHH-HHHTGGGCCSEEECCBCTTSGGGHHHHH
T ss_pred c---C--CCceEEEEC--------CCCC---------------CHHHHHHH-HHHHhhcCCCEEEcCCCcccHHHHHHHH
Confidence 5 3 389999999 5655 56788875 4569999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 258 ~~~~iPIa~dE~-~~~~~~~~~~l~~~a~d~v~~d~~~~GGit~ 300 (400)
T 4dxk_A 258 AVSPAPISASET-LGSRWAFRDLLETGAAGVVMLDISWCGGLSE 300 (400)
T ss_dssp HHCSSCEEECTT-CCHHHHHHHHHHTTCCCEEEECTTTTTHHHH
T ss_pred HhCCCCEEecCC-cCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 999999999997 5679999999999999999999999999984
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=329.84 Aligned_cols=274 Identities=16% Similarity=0.128 Sum_probs=197.6
Q ss_pred ceEEEEEEEEEec---CCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhH-------
Q 016156 44 AKVKSVKARQIID---SRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNIN------- 112 (394)
Q Consensus 44 ~~I~~V~~r~v~~---~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~------- 112 (394)
|||++|+++.+-- ...+.++.|+|+|| |++ |+||+... ...+...++
T Consensus 10 mkI~~i~~~~v~~p~~~~~~~~~~V~v~td~G~~----------G~GE~~~~------------~~~~~~~~~~~~~~~~ 67 (394)
T 3mkc_A 10 APIKSIEFIPVNYQASNWSQNTVVVKVTDENGVY----------GLGEADGS------------PDAILAYANIETEHKW 67 (394)
T ss_dssp CCEEEEEEEEEEEC----CEEEEEEEEEETTSCE----------EEEEECSC------------HHHHHHHHTCCCCBTT
T ss_pred CeEEEEEEEEEecCCCCCCccEEEEEEEECCCCe----------EEEEecCc------------HHHHHHHHhcccchhh
Confidence 9999999988832 12346799999999 986 99997321 111222222
Q ss_pred -HhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 113 -DILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 113 -~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
+.++|.|+|+||.+++++|+.|++.....+.+++..+|++|||+||||++||.+|+|||+||| |..++++|+ |.
T Consensus 68 ~~~l~p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~ 142 (394)
T 3mkc_A 68 LTNITEKAIGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLG---GTNKDKVHP--YL 142 (394)
T ss_dssp BCCTTTTTTTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEECC--EE
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcC---CCcCCeeEE--EE
Confidence 349999999999999999999986311111123556899999999999999999999999999 777778776 44
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHh-hcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKE-KYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~-k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
++++.. +...+.++. + ....+++.+...+||+++| . |.| .. ..+.+++.+++++||++
T Consensus 143 s~~~~~--~~~~~~~~~-~----~~~~~~a~~~~~~G~~~~K----~~k~g-------~~---~~~~~~d~e~v~avR~a 201 (394)
T 3mkc_A 143 TLYPAI--PVDASLDVA-I----KGYAPLLEKAKAHNIRAVK----VCVPI-------KA---DWSTKEVAYYLRELRGI 201 (394)
T ss_dssp ECCCSC--C-CCCHHHH-H----HHHHHHHHHHHHTTCSEEE----EECCT-------TC---CCCHHHHHHHHHHHHHH
T ss_pred ecCCcC--CCCcchhhh-H----HHHHHHHHHHHHcCCCEEE----eCccC-------CC---ccCHHHHHHHHHHHHHH
Confidence 432101 000000100 0 0123355566667788777 4 433 10 01233345566666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +|+.|++|+ |+.|+ +.++++++ .+.++++++.|||||++++|++++++|+
T Consensus 202 ~---G--~d~~l~vDa--------N~~~~--------------~~~~A~~~-~~~L~~~~i~~iEeP~~~~d~~~~~~l~ 253 (394)
T 3mkc_A 202 L---G--HDTDMMVDY--------LYRFT--------------DWYEVARL-LNSIEDLELYFAEATLQHDDLSGHAKLV 253 (394)
T ss_dssp H---C--SSSEEEEEC--------TTCCC--------------CHHHHHHH-HHHTGGGCCSEEESCSCTTCHHHHHHHH
T ss_pred h---C--CCCeEEEeC--------CCCCC--------------CHHHHHHH-HHHhhhcCCeEEECCCCchhHHHHHHHH
Confidence 5 3 489999999 55441 46788885 4558999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 254 ~~~~iPIa~dE~-~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 296 (394)
T 3mkc_A 254 ENTRSRICGAEM-STTRFEAEEWITKGKVHLLQSDYNRCGGLTE 296 (394)
T ss_dssp HHCSSCBEECTT-CCHHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred hhCCCCEEeCCC-CCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 999999999997 5679999999999999999999999999974
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=329.17 Aligned_cols=265 Identities=16% Similarity=0.231 Sum_probs=206.8
Q ss_pred ceEEEEEEEEE--------ecCCCC------ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRGN------PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g~------~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+++.+ .+++|. ++++|+|+|+ |++ |+||+.. +++.+++.
T Consensus 39 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~----------G~GE~~~----------g~~~~~~~ 98 (428)
T 3bjs_A 39 MKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGIT----------GYGEAHP----------GRSPGAIT 98 (428)
T ss_dssp CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCE----------EEEEECC----------TTCHHHHH
T ss_pred CEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCE----------EEEEecC----------CCCHHHHH
Confidence 99999999988 345554 6899999999 886 9999742 34566777
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC-CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccce
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDG-TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPV 187 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~-~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~ 187 (394)
..|++.++|.|+|+||.+++++|+.|.+... ..+++++..+|++|||+||||+.||.+|+|||+||| |. ++++|
T Consensus 99 ~~i~~~l~p~liG~d~~~~~~i~~~l~~~~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLG---g~-~~~vp- 173 (428)
T 3bjs_A 99 SLIHNTIAPMLIGMKATDCVGAWQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLG---GS-KRRIP- 173 (428)
T ss_dssp HHHHHTTTTTTTTSBTTCHHHHHHHHHHHTTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CC-CCCEE-
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CC-CCcee-
Confidence 8888889999999999999999999975211 111123567899999999999999999999999999 65 55555
Q ss_pred eeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHH
Q 016156 188 PAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLL 267 (394)
Q Consensus 188 p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v 267 (394)
+|++ |+.+.+ +.. +...+++.++..+||+.+| .|.| . +.+.+.+.+++|
T Consensus 174 -~~~s--g~~~~~---~~~--------e~~~~~a~~~~~~Gf~~vK----ik~g-------~------~~~~d~e~v~av 222 (428)
T 3bjs_A 174 -AYAG--GIALGY---QPK--------ESLAEEAQEYIARGYKALK----LRIG-------D------AARVDIERVRHV 222 (428)
T ss_dssp -EEEE--SSCSCS---CCH--------HHHHHHHHHHHHHTCSEEE----EECC-------S------CHHHHHHHHHHH
T ss_pred -eeee--ccccCC---ChH--------HHHHHHHHHHHHCCCCEEE----ECCC-------C------CHHHHHHHHHHH
Confidence 5665 332211 110 1235677777777888887 4422 1 223345666666
Q ss_pred HHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHH
Q 016156 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347 (394)
Q Consensus 268 ~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~ 347 (394)
|+++ | +|+.|++|+ |+.| +.+++++++. .+++|+|.|||||++++|+++|+
T Consensus 223 R~av---G--~d~~l~vDa--------n~~~---------------~~~eai~~~~-~L~~~~i~~iEqP~~~~d~~~~~ 273 (428)
T 3bjs_A 223 RKVL---G--DEVDILTDA--------NTAY---------------TMADARRVLP-VLAEIQAGWLEEPFACNDFASYR 273 (428)
T ss_dssp HHHH---C--TTSEEEEEC--------TTCC---------------CHHHHHHHHH-HHHHTTCSCEECCSCTTCHHHHH
T ss_pred HHhc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHH-HHHhcCCCEEECCCCccCHHHHH
Confidence 6665 3 489999999 5655 5678888654 58999999999999999999999
Q ss_pred HHHhhcC-CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 348 SLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 348 ~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++++ +||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 274 ~l~~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGite 320 (428)
T 3bjs_A 274 EVAKITPLVPIAAGENH-YTRFEFGQMLDAGAVQVWQPDLSKCGGITE 320 (428)
T ss_dssp HHTTTCSSSCEEECTTC-CSHHHHHHHHTTCCEEEECCBTTTSSCHHH
T ss_pred HHHHhCCCCcEEcCCCc-CCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 9999999 999999985 569999999999999999999999999974
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=325.19 Aligned_cols=263 Identities=21% Similarity=0.283 Sum_probs=207.2
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.| +++++|+|+|+ |++ |+||+...++ +|.+++..++...
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~~----~~~~~~~~~~~~~ 68 (397)
T 2qde_A 3 LKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLV----------GIADAGDTSS----WYRGETQDSITSM 68 (397)
T ss_dssp CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCE----------EEEECCCCCT----TTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCE----------EEEEEecccC----ccCCCCHHHHHHH
Confidence 899999998872 1222 46899999999 876 9999865432 4678888888888
Q ss_pred hHHhHhh-hhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 111 INDILGP-KLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 111 I~~~l~p-~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
|++.|+| .|+|+||.+++++|+.|... . ++ ..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 69 i~~~l~~~~l~G~d~~~~~~l~~~l~~~---~-~~--~~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~~~~~vp~-- 137 (397)
T 2qde_A 69 ICDFFAPKVLLGEDPTKIEKIVGRMDIL---T-RD--NNQAKATVDFALHDLVGKRFGVPVYQLLG---GKTIERIPL-- 137 (397)
T ss_dssp HHHTHHHHTTTTCCTTCHHHHHHHHHHH---C-SS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSSEEB--
T ss_pred HHHhhhhHhhcCCChHhHHHHHHHhhhh---h-cc--chhHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCCcce--
Confidence 9988999 99999999999999999432 1 12 46899999999999999999999999999 765666665
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
|++++.+ +.++ ..+++.++..+||+.+| .|.| . +++.+.+.+++||+
T Consensus 138 ~~~~g~~-------~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~------~~~~~~e~v~avR~ 184 (397)
T 2qde_A 138 GLVLGAG-------EPEA---------VAEEALAVLREGFHFVK----LKAG-------G------PLKADIAMVAEVRR 184 (397)
T ss_dssp CEECCCS-------CHHH---------HHHHHHHHHHHTCSCEE----EECC-------S------CHHHHHHHHHHHHH
T ss_pred EEECCCC-------CHHH---------HHHHHHHHHHhhhhhee----eccc-------C------CHHHHHHHHHHHHH
Confidence 5543211 1222 25677777777888887 4422 1 22334566666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +|+.|++|+ |+.| +.++++++. +.+++|++.|||||++++|+++|++|
T Consensus 185 a~---g--~d~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l 235 (397)
T 2qde_A 185 AV---G--DDVDLFIDI--------NGAW---------------TYDQALTTI-RALEKYNLSKIEQPLPAWDLDGMARL 235 (397)
T ss_dssp HH---C--TTSCEEEEC--------TTCC---------------CHHHHHHHH-HHHGGGCCSCEECCSCTTCHHHHHHH
T ss_pred hh---C--CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHHHhCCCCEEECCCChhhHHHHHHH
Confidence 66 3 489999999 5655 567888864 56999999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 236 ~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 279 (397)
T 2qde_A 236 RGKVATPIYADESA-QELHDLLAIINKGAADGLMIKTQKAGGLLK 279 (397)
T ss_dssp HTTCSSCEEESTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HhhCCCCEEEeCCc-CCHHHHHHHHHcCCCCEEEEeccccCCHHH
Confidence 99999999999985 679999999999999999999999999974
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=327.22 Aligned_cols=260 Identities=17% Similarity=0.219 Sum_probs=204.9
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.| +..+.|+|+|+ |++ |+||+... +.|.+++...+...
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 69 (389)
T 3s5s_A 5 TLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTL----------GFGEAAPL-----PAFNGETQDGSRAA 69 (389)
T ss_dssp TBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCC-----HHHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCE----------EEEeccCC-----CCcCccCHHHHHHH
Confidence 89999998877 23444 35789999999 986 99998542 24567777777777
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
++ .++|.|+|+||.+++++|+.|.+... . ...+|++|||+||||+.||.+|+|||+||| |.. +++|++
T Consensus 70 l~-~l~~~l~G~d~~~~~~~~~~l~~~~~-~----~~~~A~said~ALwDl~gk~~g~Pl~~LLG---g~~-~~v~~~-- 137 (389)
T 3s5s_A 70 AV-SLREAVVGSDARAWRAVARALREASG-G----GAGAARCAIETAILDALTKRAGMPLWAFFG---GSG-TALTTD-- 137 (389)
T ss_dssp HH-HTHHHHTTSBGGGHHHHHHHHHHHHT-T----CCHHHHHHHHHHHHHHHHHTTTCBHHHHTT---CSC-SEEECC--
T ss_pred HH-HHHHHhcCCCccCHHHHHHHHHHhhc-c----ChHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-CceEEE--
Confidence 75 69999999999999999999986321 1 114799999999999999999999999999 654 566653
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++.+ + .+...+++.++..+||+++| .|.| ..+.+.+.+++++||++
T Consensus 138 ~t~~~~-------~---------~e~~~~~a~~~~~~G~~~iK----lKvg------------~~~~~~d~~~v~avR~~ 185 (389)
T 3s5s_A 138 ITITTG-------S---------PERAEEAARRAAAMGFRALK----VKVG------------GRLAASDPARIEAIHAA 185 (389)
T ss_dssp EEECSS-------C---------SHHHHHHHHHHHHHTCCEEE----EECC------------GGGTTTHHHHHHHHHHH
T ss_pred eeecCC-------C---------HHHHHHHHHHHHHcCCCeEE----EEec------------CCChHHHHHHHHHHHHh
Confidence 333221 1 12346677777778899888 5643 11234456677777666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh--hcCCceeeeCCCCCCCHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV--RDFPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l--~~~~i~~iEdPl~~~D~~~~~~ 348 (394)
+ +++.|++|+ |+.| |.++++++.. .+ ++|+|.|||||++++|+++|++
T Consensus 186 ~------~~~~L~vDa--------N~~w---------------~~~~A~~~~~-~L~~~~~~i~~iEeP~~~~d~~~~~~ 235 (389)
T 3s5s_A 186 A------PGASLILDG--------NGGL---------------TAGEALALVA-HARRLGADVALLEQPVPRDDWDGMKE 235 (389)
T ss_dssp C------TTCEEEEEC--------TTCS---------------CHHHHHHHHH-HHHHTTCEEEEEECCSCTTCHHHHHH
T ss_pred C------CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHhhCCCCeEEEECCCCcccHHHHHH
Confidence 5 688999999 5655 5678888644 58 8899999999999999999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. +.++++++++++.+++|++|+|+++ ||||+
T Consensus 236 l~~~~~iPIa~dEs-~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~ 279 (389)
T 3s5s_A 236 VTRRAGVDVAADES-AASAEDVLRVAAERAATVVNIKLMK-GGIAE 279 (389)
T ss_dssp HHHHSSSCEEESTT-CSSHHHHHHHHHTTCCSEEEECHHH-HHHHH
T ss_pred HHhhCCCCEEECCC-CCCHHHHHHHHHcCCCCEEEecCCC-CCHHH
Confidence 99999999999997 5789999999999999999999999 99974
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=323.42 Aligned_cols=260 Identities=19% Similarity=0.218 Sum_probs=205.8
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+- .+.| +..+.|+|+|+ |++ |+||+... +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIV----------GVAEAPPR-----PFTYGETQTGIVAV 65 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCE----------EEEEECCC-----TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCE----------EEEeccCC-----CCccCCCHHHHHHH
Confidence 899999998882 1222 35799999999 886 99997432 35677888888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|.+. . ...+|++|||+||||+.||.+|+|||+||| | .++++|+ |
T Consensus 66 i~~~l~~~l~G~d~~~~~~~~~~l~~~--~-----~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g-~~~~v~~--~ 132 (367)
T 3dg3_A 66 IEQYFAPALIGLTLTEREVAHTRMART--V-----GNPTAKAAIDMAMWDALGQSLRLSVSEMLG---G-YTDRMRV--S 132 (367)
T ss_dssp HHHTHHHHHTTCBTTCHHHHHHHHTTS--C-----SCHHHHHHHHHHHHHHHHHHHTCBHHHHHT---C-CCSEEEE--E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHhc--c-----CchHHHHHHHHHHHHHHHHHcCCcHHHHhC---C-CCCeEEE--E
Confidence 988999999999999999999999753 1 124799999999999999999999999999 7 5677776 4
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
.+++.+ +. +...+++.+...+ ||+++| .|.| . .+. +.+.+++++||+
T Consensus 133 ~~~~~~-------~~---------~~~~~~a~~~~~~~G~~~~K----~K~g-------~----~~~-~~d~~~v~avR~ 180 (367)
T 3dg3_A 133 HMLGFD-------DP---------VKMVAEAERIRETYGINTFK----VKVG-------R----RPV-QLDTAVVRALRE 180 (367)
T ss_dssp EEEESS-------CH---------HHHHHHHHHHHHHHCCCEEE----EECC-------C----SST-HHHHHHHHHHHH
T ss_pred EEecCC-------CH---------HHHHHHHHHHHHhcCccEEE----EeeC-------C----Chh-hhHHHHHHHHHH
Confidence 443221 11 2245677777777 888888 5643 1 111 134566777777
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +++.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|
T Consensus 181 a~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l 231 (367)
T 3dg3_A 181 RF---G--DAIELYVDG--------NRGW---------------SAAESLRA-MREMADLDLLFAEELCPADDVLSRRRL 231 (367)
T ss_dssp HH---G--GGSEEEEEC--------TTCS---------------CHHHHHHH-HHHTTTSCCSCEESCSCTTSHHHHHHH
T ss_pred Hh---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHHHhCCCEEECCCCcccHHHHHHH
Confidence 76 3 489999999 5655 46788875 455999999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++++|++++ |||+
T Consensus 232 ~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~~-Git~ 274 (367)
T 3dg3_A 232 VGQLDMPFIADES-VPTPADVTREVLGGSATAISIKTART-GFTG 274 (367)
T ss_dssp HHHCSSCEEECTT-CSSHHHHHHHHHHTSCSEEEECHHHH-TTHH
T ss_pred HHhCCCCEEecCC-cCCHHHHHHHHHcCCCCEEEeehhhh-hHHH
Confidence 9999999999997 56799999999999999999999999 9974
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=324.17 Aligned_cols=259 Identities=17% Similarity=0.233 Sum_probs=200.5
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.| +..+.|+|+|+ |++ |+||+... +.|.+++...+...
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 69 (365)
T 3ik4_A 5 TTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTL----------GLGEAAPF-----PAVSGETQTGTSAA 69 (365)
T ss_dssp TBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCE----------EEEEECCC-----CTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCE----------EEEecccC-----CCcCcCCHHHHHHH
Confidence 899999998882 2333 35799999999 986 99998543 35677778888777
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
++ .++|.|+|+||.+++++|+.|.+.. . ...+|++|||+||||+.||.+|+|||+||| |.. +++|++
T Consensus 70 l~-~l~~~l~G~d~~~~~~~~~~l~~~~--~----~~~~a~said~ALwDl~gk~~g~Pl~~LLG---g~~-~~v~~~-- 136 (365)
T 3ik4_A 70 IE-RLQSHLLGADVRGWRKLAAMLDHAE--H----EAAAARCGLEMAMLDALTRHYHMPLHVFFG---GVS-KQLETD-- 136 (365)
T ss_dssp HH-HHGGGTTTCBGGGHHHHHHHHHHHC--T----TCHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CSC-SEEEBC--
T ss_pred HH-HHHHHHcCCCccCHHHHHHHHHHHh--c----ccHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-Cceeee--
Confidence 74 6999999999999999999998632 1 125799999999999999999999999999 654 566653
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++.+ +. +...+++.++..+||+++| .|.| . .+.+.+.+++++||++
T Consensus 137 ~~~~~~-------~~---------e~~~~~a~~~~~~G~~~iK----~Kvg-------~-----~~~~~d~~~v~avr~~ 184 (365)
T 3ik4_A 137 MTITAG-------DE---------VHAAASAKAILARGIKSIK----VKTA-------G-----VDVAYDLARLRAIHQA 184 (365)
T ss_dssp EEECCS-------CH---------HHHHHHHHHHHHTTCCCEE----EECC-------S-----SCHHHHHHHHHHHHHH
T ss_pred EEecCC-------CH---------HHHHHHHHHHHHcCCCEEE----EEeC-------C-----CCHHHHHHHHHHHHHh
Confidence 333211 11 2235666667777888887 5533 1 1222334445555544
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh--hcCCceeeeCCCCCCCHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV--RDFPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l--~~~~i~~iEdPl~~~D~~~~~~ 348 (394)
+ +++.|++|+ |+.| +.++++++. +.+ ++|+|.|||||++++|+++|++
T Consensus 185 ~------~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~L~~~~~~i~~iEeP~~~~d~~~~~~ 234 (365)
T 3ik4_A 185 A------PTAPLIVDG--------NCGY---------------DVERALAFC-AACKAESIPMVLFEQPLPREDWAGMAQ 234 (365)
T ss_dssp S------SSCCEEEEC--------TTCC---------------CHHHHHHHH-HHHHHTTCCEEEEECCSCTTCHHHHHH
T ss_pred C------CCCeEEEEC--------CCCC---------------CHHHHHHHH-HHHhhCCCCceEEECCCCcccHHHHHH
Confidence 3 678999999 5655 467888764 458 8899999999999999999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. ++++++++++++.+++|++|+|+++ ||||+
T Consensus 235 l~~~~~ipIa~dE~-~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~ 278 (365)
T 3ik4_A 235 VTAQSGFAVAADES-ARSAHDVLRIAREGTASVINIKLMK-AGVAE 278 (365)
T ss_dssp HHHHSSSCEEESTT-CSSHHHHHHHHHHTCCSEEEECHHH-HCHHH
T ss_pred HHhhCCCCEEECCC-CCCHHHHHHHHHhCCCCEEEEcCCc-cCHHH
Confidence 99999999999997 5789999999999999999999999 99974
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=324.93 Aligned_cols=262 Identities=20% Similarity=0.276 Sum_probs=207.4
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.| ++++.|+|+|+ |++ |+||+... +.|.+++..++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~----------G~GE~~~~-----~~~~~~~~~~~~~~ 65 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGII----------GYGEGVAD-----DHVTGESWESTFHT 65 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCC-----HHHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCE----------EEEEecCC-----CCcCCCCHHHHHHH
Confidence 78999988776 12333 36799999999 876 99998542 24567788888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|.+... . +.+|++|||+||||+.||.+|+|||+||| |..++++|++
T Consensus 66 i~~~l~~~l~g~d~~~~~~~~~~l~~~~~-~-----~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~v~~~-- 134 (369)
T 2p8b_A 66 LKHTLTPALIGQNPMNIEKIHDMMDNTIY-G-----VPTAKAAIDIACFDIMGKKLNQPVYQLIG---GRYHEEFPVT-- 134 (369)
T ss_dssp HHHTHHHHHTTCCTTCHHHHHHHHHHHCS-C-----CHHHHHHHHHHHHHHHHHHTTSBGGGGTT---CCCCSCEECC--
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceeee--
Confidence 99889999999999999999999987431 1 24899999999999999999999999999 7656777764
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
..++++ +.++ ..+++.++..+||+.+| .|.| . +.+.+.+.++.||++
T Consensus 135 ~~i~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~------~~~~~~e~v~avr~a 181 (369)
T 2p8b_A 135 HVLSIA-------DPEN---------MAEEAASMIQKGYQSFK----MKVG-------T------NVKEDVKRIEAVRER 181 (369)
T ss_dssp EEECSC-------CHHH---------HHHHHHHHHHTTCCEEE----EECC-------S------CHHHHHHHHHHHHHH
T ss_pred EEecCC-------ChHH---------HHHHHHHHHHcCcCEEE----EEeC-------C------CHHHHHHHHHHHHHH
Confidence 444332 1222 25566667777788777 4422 1 223345566666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHH-HHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLG-DLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i-~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
+ | +++.|++|+ |+.| +.++++ ++. +.+++|++.|||||++++|+++|++|
T Consensus 182 ~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l 232 (369)
T 2p8b_A 182 V---G--NDIAIRVDV--------NQGW---------------KNSANTLTAL-RSLGHLNIDWIEQPVIADDIDAMAHI 232 (369)
T ss_dssp H---C--TTSEEEEEC--------TTTT---------------BSHHHHHHHH-HTSTTSCCSCEECCBCTTCHHHHHHH
T ss_pred h---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHHHhCCCcEEECCCCcccHHHHHHH
Confidence 5 3 489999999 5655 456888 864 45899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 233 ~~~~~iPI~~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 276 (369)
T 2p8b_A 233 RSKTDLPLMIDEG-LKSSREMRQIIKLEAADKVNIKLMKCGGIYP 276 (369)
T ss_dssp HHTCCSCEEESTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHhCCCCEEeCCC-CCCHHHHHHHHHhCCCCEEEeecchhCCHHH
Confidence 9999999999997 5789999999999999999999999999974
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=326.68 Aligned_cols=239 Identities=13% Similarity=0.111 Sum_probs=186.1
Q ss_pred eEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc-C
Q 016156 62 TVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID-G 139 (394)
Q Consensus 62 tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~-~ 139 (394)
+|+|+|+|+ |++ |+||+.. + +.++..+++.|+|.|+|+||.++++||+.|.+.. .
T Consensus 71 ~v~V~v~td~G~~----------G~GE~~~----------g---~~~~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~ 127 (415)
T 2p3z_A 71 TLIVEVEAENRQT----------GFAVSTA----------G---EMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMY 127 (415)
T ss_dssp EEEEEEEETTSCE----------EEEEEEC----------H---HHHHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCCE----------EEEEecC----------C---HHHHHHHHHHHHHHHCCCChhhHHHHHHHHHHhhhc
Confidence 789999999 986 9998731 2 2334457788999999999999999999998743 2
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
+.++++++.+|++|||+||||++||.+|+|||+||| |..++++|+ |++ |+ + .+
T Consensus 128 ~~g~~~~~~~A~said~ALwDl~ak~~g~Pl~~lLG---G~~~~~vp~--y~~--g~-------~-------------~~ 180 (415)
T 2p3z_A 128 YSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLG---GAVRDEIQF--YAT--GA-------R-------------PD 180 (415)
T ss_dssp TSTTSSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSSSEEEE--EEE--SS-------C-------------HH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceee--eec--CC-------C-------------HH
Confidence 224456778899999999999999999999999999 765667665 554 22 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
+++ ..||+++| .|.| .++++|+. +++.+.+++++||+++ | +++.|++|+ |+.|
T Consensus 181 ~~~---~~G~~~~K----iK~g-----~g~~~G~~-~~~~d~~~v~avrea~---G--~~~~L~vDa--------N~~~- 233 (415)
T 2p3z_A 181 LAK---EMGFIGGK----MPTH-----WGPHDGDA-GIRKDAAMVADMREKC---G--PDFWLMLDC--------WMSQ- 233 (415)
T ss_dssp HHH---HHTCSEEE----EECC-----CCGGGHHH-HHHHHHHHHHHHHHHH---C--SSSEEEEEC--------TTCC-
T ss_pred HHH---HhCcceEE----Eecc-----cCcccccc-cHHHHHHHHHHHHHHh---C--CCCEEEEEC--------CCCC-
Confidence 333 34588777 4432 23333321 2233455666666665 3 489999999 5655
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
+.+++++++.+ +++|+|.|||||++++|+++|++|+++++ +||++||+. .++++++++++.+
T Consensus 234 --------------~~~~Ai~~~~~-l~~~~i~~iEqPl~~~d~~~~~~l~~~~~~~ipIa~dE~~-~~~~~~~~~i~~~ 297 (415)
T 2p3z_A 234 --------------DVNYATKLAHA-CAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMVTSGEHH-GTLQSFRTLAETG 297 (415)
T ss_dssp --------------CHHHHHHHHHH-HGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTC-CSHHHHHHHHHTT
T ss_pred --------------CHHHHHHHHHH-HhhcCCceEeCCCCcchHHHHHHHHHhcCCCCcEEcCCCC-CCHHHHHHHHHcC
Confidence 46789987665 89999999999999999999999999998 899999985 5799999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
+|++|||++++||||+
T Consensus 298 -~d~i~ik~~~~GGite 313 (415)
T 2p3z_A 298 -IDIMQPDVGWCGGLTT 313 (415)
T ss_dssp -CSEECCCHHHHTCHHH
T ss_pred -CCEEEeCccccCCHHH
Confidence 9999999999999985
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=324.98 Aligned_cols=257 Identities=17% Similarity=0.223 Sum_probs=203.4
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+ ..+.| ++++.|+|+|+ |++ |+||+... +.|.+++.+.+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~ge~~~~~~~~ 65 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLV----------GYGEGGPG-----IFITGETLAGTLET 65 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCC-----TTTTCCCHHHHHHH
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCE----------EEEeecCC-----CCcCCCCHHHHHHH
Confidence 89999998877 12333 36799999999 986 99998532 24567777888887
Q ss_pred hHHhHh---hhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccce
Q 016156 111 INDILG---PKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPV 187 (394)
Q Consensus 111 I~~~l~---p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~ 187 (394)
|+ .++ |.|+|+||.+++++|+.|. .. ..+|++|||+||||+.||.+|+|||+||| | .++++|+
T Consensus 66 i~-~l~~~~p~l~G~d~~~~~~~~~~l~----~~-----~~~A~~aid~AlwDl~gk~~g~Pl~~llG---g-~~~~v~~ 131 (354)
T 3jva_A 66 IE-LFGQAIIGLNPFNIEKIHEVMDKIS----AF-----APAAKAAIDIACYDLMGQKAQLPLYQLLG---G-YDNQVIT 131 (354)
T ss_dssp HH-HHHTTSTTCCTTCHHHHHHHHHHHC----SS-----CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---C-SCSEEEC
T ss_pred HH-HHhhcCccccCCCcccHHHHHHHHh----cc-----cHHHHHHHHHHHHHHHHHHcCCcHHHHhh---c-cCCeeee
Confidence 87 799 9999999999999999996 11 14799999999999999999999999999 7 5677776
Q ss_pred eeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHH
Q 016156 188 PAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLL 267 (394)
Q Consensus 188 p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v 267 (394)
. ..++.+ +. +...+++.++..+||+++| .|.| . +.+.+.+.+++|
T Consensus 132 ~--~~~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----~K~g-------~------~~~~d~~~v~av 176 (354)
T 3jva_A 132 D--ITLGID-------EP---------NVMAQKAVEKVKLGFDTLK----IKVG-------T------GIEADIARVKAI 176 (354)
T ss_dssp C--EEECSC-------CH---------HHHHHHHHHHHHTTCSEEE----EECC-------S------CHHHHHHHHHHH
T ss_pred e--EEeCCC-------CH---------HHHHHHHHHHHHhCCCeEE----EEeC-------C------CHHHHHHHHHHH
Confidence 4 222211 11 2235677777777888888 5533 1 113345566666
Q ss_pred HHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHH
Q 016156 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347 (394)
Q Consensus 268 ~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~ 347 (394)
|+++ | +++.|++|+ |+.| +.++++++. +.++++++.|||||++++|+++++
T Consensus 177 R~a~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~-~~L~~~~i~~iEqP~~~~d~~~~~ 227 (354)
T 3jva_A 177 REAV---G--FDIKLRLDA--------NQAW---------------TPKDAVKAI-QALADYQIELVEQPVKRRDLEGLK 227 (354)
T ss_dssp HHHH---C--TTSEEEEEC--------TTCS---------------CHHHHHHHH-HHTTTSCEEEEECCSCTTCHHHHH
T ss_pred HHHc---C--CCCeEEEEC--------CCCC---------------CHHHHHHHH-HHHHhcCCCEEECCCChhhHHHHH
Confidence 6665 3 489999999 5655 567888865 458999999999999999999999
Q ss_pred HHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 348 SLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 348 ~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 228 ~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~ 273 (354)
T 3jva_A 228 YVTSQVNTTIMADES-CFDAQDALELVKKGTVDVINIKLMKCGGIHE 273 (354)
T ss_dssp HHHHHCSSEEEESTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHHHhCCCCEEEcCC-cCCHHHHHHHHHcCCCCEEEECchhcCCHHH
Confidence 999999999999997 6789999999999999999999999999974
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=325.71 Aligned_cols=266 Identities=16% Similarity=0.159 Sum_probs=208.6
Q ss_pred CcceEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 42 SSAKVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 42 ~~~~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
..|||++|+.+.+- .+.| +..+.|+|+|+|++ |+||+.... .|.|.+++...+..
T Consensus 5 ~~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t~G~~----------G~GE~~~~~---~p~~~~et~~~~~~ 71 (400)
T 3mwc_A 5 ESARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIREGDLF----------GYGESAPFE---EPFYLGETLETTKV 71 (400)
T ss_dssp CCCCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEETTEE----------EEEEECCBS---STTSTTCBHHHHHH
T ss_pred CCcEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEECCeE----------EEEecccCC---CCccccCcHHHHHH
Confidence 34999999998882 1233 35799999998775 999985431 14688888889888
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC----------
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG---------- 179 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g---------- 179 (394)
.|++.|+|.|+|+||.+++++|+.|... .. +. ..|++|||+||||+.||.+|+|||+||| |
T Consensus 72 ~i~~~l~p~liG~d~~~~e~~~~~l~~~---~~-g~--~~A~said~ALwDl~gk~~g~Pl~~LLG---G~~~~~~~~~~ 142 (400)
T 3mwc_A 72 ILKNHLLPMILGKEPLSIEEFNHLIKNG---IR-GN--HFARCGVENAYWDLIAKKNKISLKAMIE---KKMKNLGVKQE 142 (400)
T ss_dssp HHHHTHHHHHTTCCCSSHHHHHHHHHHS---CC-SC--HHHHHHHHHHHHHHHHHHTTCBHHHHHH---HHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH---hc-CC--HHHHHHHHHHHHHHHHHHcCCcHHHHhC---Ccccccccccc
Confidence 8998999999999999999999999862 11 11 3599999999999999999999999999 4
Q ss_pred --CcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCC
Q 016156 180 --TKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNV 257 (394)
Q Consensus 180 --~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~ 257 (394)
..++++|+ |.++ |... ..+. +...+++.+...+||+++| .|.| +
T Consensus 143 ~~~~r~~v~~--~~s~--g~~~--~~~~---------e~~~~~a~~~~~~G~~~iK----lKv~-------------~-- 188 (400)
T 3mwc_A 143 YLASNNYIES--GAAL--GIPE--DGRI---------ETLIHQVEESLQEGYRRIK----IKIK-------------P-- 188 (400)
T ss_dssp GGCBCSEEEB--CEEE--CCCT--TCCH---------HHHHHHHHHHHHHTCSCEE----EECB-------------T--
T ss_pred cccCCCeEEe--eEEe--ccCC--CCCH---------HHHHHHHHHHHHcCCCEEE----EEeC-------------c--
Confidence 45677776 3333 2110 0001 2235667777777888887 4422 2
Q ss_pred CChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCC
Q 016156 258 QDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP 337 (394)
Q Consensus 258 ~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdP 337 (394)
+.+.+++++||+++ | +++.|++|+ |+.|+ .++ +++ .+.+++|++.|||||
T Consensus 189 ~~d~~~v~avR~a~---G--~~~~L~vDa--------N~~w~---------------~~~-~~~-~~~l~~~~i~~iEqP 238 (400)
T 3mwc_A 189 GWDVEPLQETRRAV---G--DHFPLWTDA--------NSSFE---------------LDQ-WET-FKAMDAAKCLFHEQP 238 (400)
T ss_dssp TBSHHHHHHHHHHH---C--TTSCEEEEC--------TTCCC---------------GGG-HHH-HHHHGGGCCSCEESC
T ss_pred chHHHHHHHHHHhc---C--CCCEEEEeC--------CCCCC---------------HHH-HHH-HHHHHhcCCCEEeCC
Confidence 23477888888887 3 489999999 67664 445 665 456899999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 338 FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 338 l~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++|++++++|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 239 ~~~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 294 (400)
T 3mwc_A 239 LHYEALLDLKELGERIETPICLDES-LISSRVAEFVAKLGISNIWNIKIQRVGGLLE 294 (400)
T ss_dssp SCTTCHHHHHHHHHHSSSCEEESTT-CCSHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred CChhhHHHHHHHHhhCCCCEEEeCC-cCCHHHHHHHHhcCCCCEEEEcchhhCCHHH
Confidence 9999999999999999999999997 4679999999999999999999999999974
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=325.84 Aligned_cols=241 Identities=16% Similarity=0.153 Sum_probs=182.4
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
.++.|+|+|| |++ |+||+. .+ ..++..|++.|+|.|+|+||.+++++|+.|++...
T Consensus 59 ~~v~V~v~td~G~~----------G~Ge~~----------~g---~~~~~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~ 115 (404)
T 3ekg_A 59 GTLVVEIEASDGNV----------GFAVTT----------GG---EPAAYIVEKHLARFLEGARVTDIERIWDQMYNSTL 115 (404)
T ss_dssp CEEEEEEEETTSCE----------EEEEEE----------CH---HHHHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHG
T ss_pred cEEEEEEEECCCCE----------EEEeCC----------Cc---HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhh
Confidence 4699999999 986 999863 12 23345677889999999999999999999987321
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
..+.+++..+|++|||+||||++||.+|+|||+||| |..++++|+ |++ |+ ..+
T Consensus 116 ~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~~--g~--------------------~~~ 168 (404)
T 3ekg_A 116 YYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLG---GAVRDELQF--YAT--GA--------------------RPD 168 (404)
T ss_dssp GGCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSSSEEEE--EEE--SS--------------------CHH
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHHcC---CCCCCeeEE--ecC--CC--------------------CHH
Confidence 222234556799999999999999999999999999 777778776 442 21 011
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
.+ ..+||+++| .|.| .+...+ ..+++.+.+++++||+++ | +++.|++|+ |+.|
T Consensus 169 ~~---~~~Gf~~~K----~Kv~-----~g~~~g-~~~~~~di~~v~avRea~---G--~~~~L~vDa--------N~~w- 221 (404)
T 3ekg_A 169 LA---QKMGFIGGK----MPLH-----HGPSEG-EEGLKKNLEELATMRERV---G--PDFWLMFDC--------WMSL- 221 (404)
T ss_dssp HH---HHTTCSEEE----EECC-----CCGGGH-HHHHHHHHHHHHHHHHHH---C--SSSEEEEEC--------TTCC-
T ss_pred HH---HHcCCCEEE----EecC-----CCCccc-cccHHHHHHHHHHHHHHh---C--CCCeEEecC--------CCCC-
Confidence 22 234687777 4432 010000 011233455666666666 3 489999999 5655
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCC--eEEecCccccCHHHHHHHHhcC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDI--QLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i--~I~gde~~~~~~~~~~~~i~~~ 377 (394)
|.++++++. +.+++|++.|||||++++|+++|++|++++++ ||++||.. .++++++++++.+
T Consensus 222 --------------~~~~A~~~~-~~Le~~~l~~iEeP~~~~d~~~~a~l~~~~~~pi~Ia~gE~~-~~~~~~~~li~~~ 285 (404)
T 3ekg_A 222 --------------DLNYATRLA-RGAREYGLKWIEEALPPDDYWGYAELRRNAPTGMMVTTGEHE-ATRWGFRMLLEMG 285 (404)
T ss_dssp --------------CHHHHHHHH-HHHGGGTCCEEECCSCTTCHHHHHHHHHHSCTTCEEEECTTC-CHHHHHHHHHHTT
T ss_pred --------------CHHHHHHHH-HHHhhcCCcEEecCCCcccHHHHHHHHHhcCCCeEEEecCcc-CCHHHHHHHHHcC
Confidence 567888864 45899999999999999999999999999885 49999974 5799999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 286 a~dii~~d~~~~GGite 302 (404)
T 3ekg_A 286 CCDIIQPDVGWCGGVTE 302 (404)
T ss_dssp CCSEECCCTTTTTHHHH
T ss_pred CCCeEecChhhcCCccH
Confidence 99999999999999985
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=330.33 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=199.5
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.| +..+.|+|+|+ |++ |+||+... +.|.+++...+...
T Consensus 27 mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 91 (393)
T 3u9i_A 27 TTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTR----------GYGEAAPF-----PAFNGETQDMAHAA 91 (393)
T ss_dssp TBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCE----------EEEEECCC-----HHHHSCCHHHHHHH
T ss_pred cEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCE----------EEEEeeCC-----CCcCcCCHHHHHHH
Confidence 899999998882 2333 35789999999 986 99998542 24667777777777
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
++ .++|.|+|+||.+++++|+.|.+. .. ...+|++|||+||||+.||.+|+|||+||| |.. +++|++
T Consensus 92 l~-~l~p~l~G~d~~~~~~~~~~l~~~--~~----~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~-~~v~~~-- 158 (393)
T 3u9i_A 92 IL-AARSLVEGADVREWRRIALALPAL--PG----MTGSARCAIETAILDALTRRARLPLWAFFG---GAA-TSLETD-- 158 (393)
T ss_dssp HH-HTHHHHTTSBGGGHHHHHHHGGGS--TT----CCHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CSC-SEEECC--
T ss_pred HH-HHHHHhcCCCcCCHHHHHHHHHHh--cC----ccHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCC-CceEEE--
Confidence 75 699999999999999999999752 11 135799999999999999999999999999 654 567763
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCC---CCChHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPN---VQDNREGLVLL 267 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~---~~~~~~~l~~v 267 (394)
.+++.+ + .+...+++.++..+||+++| .|.|.. ...... ++.+.+++++|
T Consensus 159 ~t~~~~-------~---------~e~~~~~a~~~~~~Gf~~iK----lKvg~~-------~~~~~~~~~~~~di~~v~av 211 (393)
T 3u9i_A 159 VTITTG-------S---------VTAAARAAQAIVARGVTTIK----IKIGAG-------DPDATTIRTMEHDLARIVAI 211 (393)
T ss_dssp EEEC-------------------CHHHHHHHHHHHTTTCCEEE----EECC--------------CHHHHHHHHHHHHHH
T ss_pred EEecCC-------C---------HHHHHHHHHHHHHcCCCeEE----EEeCCC-------cccccccccHHHHHHHHHHH
Confidence 333211 1 12346677777778898888 564411 000000 22234444444
Q ss_pred HHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh--hcCCceeeeCCCCCCCHHH
Q 016156 268 TDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV--RDFPIVSIEDPFDQDDWSS 345 (394)
Q Consensus 268 ~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l--~~~~i~~iEdPl~~~D~~~ 345 (394)
|+++ +++.|++|+ |+.| +.++++++. +.+ ++|+|.|||||++++|+++
T Consensus 212 R~a~------~d~~L~vDa--------N~~w---------------~~~~A~~~~-~~L~~~~~~i~~iEeP~~~~d~~~ 261 (393)
T 3u9i_A 212 RDVA------PTARLILDG--------NCGY---------------TAPDALRLL-DMLGVHGIVPALFEQPVAKDDEEG 261 (393)
T ss_dssp HHHS------TTSEEEEEC--------CSCC---------------CHHHHHHHH-HTTTTTTCCCSEEECCSCTTCTTH
T ss_pred HHHC------CCCeEEEEc--------cCCC---------------CHHHHHHHH-HHHhhCCCCeEEEECCCCCCcHHH
Confidence 4443 689999999 5655 567888764 458 8899999999999999999
Q ss_pred HHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 346 WASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 346 ~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++++||++||. +.++++++++++.+++|++|+|+++ ||||+
T Consensus 262 ~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~i~~k~~~-GGit~ 308 (393)
T 3u9i_A 262 LRRLTATRRVPVAADES-VASATDAARLARNAAVDVLNIKLMK-CGIVE 308 (393)
T ss_dssp HHHHHHTCSSCEEESTT-CCSHHHHHHHHHTTCCSEEEECHHH-HCHHH
T ss_pred HHHHHhhCCCcEEeCCc-CCCHHHHHHHHHcCCCCEEEecccc-cCHHH
Confidence 99999999999999997 5789999999999999999999999 99974
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=323.68 Aligned_cols=266 Identities=15% Similarity=0.154 Sum_probs=199.9
Q ss_pred hhcCCcceEEEEEEEEEec---------CCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchh
Q 016156 38 STASSSAKVKSVKARQIID---------SRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103 (394)
Q Consensus 38 ~~f~~~~~I~~V~~r~v~~---------~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~ 103 (394)
.||+. |||++|+.+.+-- +.| +..+.|+|+|| |++ |+||+... .+.|+.++
T Consensus 18 ~~~~~-MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~----------G~GE~~~~----~~~~~~~~ 82 (391)
T 4e8g_A 18 LYFQS-MKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLA----------GWGETCPV----GPTYAPSH 82 (391)
T ss_dssp ------CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCE----------EEEEECCS----STTTSSCC
T ss_pred eeccC-CEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCE----------EEecCcCC----CCccCCcc
Confidence 44543 9999999988721 222 35799999999 986 99998532 13566666
Q ss_pred HHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccc
Q 016156 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKEL 183 (394)
Q Consensus 104 ~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~ 183 (394)
...+...|++ ++|.|+|+||.+++++|+.|.+.. . + ..+|++|||+||||+.||.+|+|||+||| |..++
T Consensus 83 ~~~~~~~l~~-l~p~l~G~d~~~~~~~~~~l~~~~--~--g--~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~ 152 (391)
T 4e8g_A 83 ALGARAALAE-MAPGLIGANPLQPLVLRRRMDGLL--C--G--HNYAKAAIDIAAYDLMGKHYGVRVADLLG---GVAAE 152 (391)
T ss_dssp HHHHHHHHHH-HGGGGTTCCTTCHHHHHHHHHTTC--S--S--CHHHHHHHHHHHHHHHHHHHTCBGGGGTT---CCSCS
T ss_pred HHHHHHHHHH-HHHHHCCCCcCCHHHHHHHHHHHh--c--C--cHHHHHHHHHHHHHHHHHHcCChHHHhcC---CCCCC
Confidence 6777777766 999999999999999999997531 1 1 14799999999999999999999999999 77677
Q ss_pred ccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHH
Q 016156 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREG 263 (394)
Q Consensus 184 ~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~ 263 (394)
++|++ .+++.+ +. +...+++.++..+||+.+| .|.| ..+.+.+.++
T Consensus 153 ~v~~y--~s~~~~-------~~---------e~~~~~a~~~~~~G~~~~K----lKvg------------~~~~~~d~~~ 198 (391)
T 4e8g_A 153 RVPSY--YATGIG-------QP---------DEIARIAAEKVAEGFPRLQ----IKIG------------GRPVEIDIET 198 (391)
T ss_dssp EEECC--EEECSC-------CH---------HHHHHHHHHHHHTTCSEEE----EECC------------SSCHHHHHHH
T ss_pred cEEEe--EEcCCC-------CH---------HHHHHHHHHHHHcCCcEEE----EcCC------------CCCHHHHHHH
Confidence 88774 433221 11 2235666667777888887 5533 1122333455
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCH
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~ 343 (394)
+++||+++ | .+++.|++|+ |+.| +.++++++ .+.+++|++ |||||+ +|+
T Consensus 199 v~avR~a~---g-g~~~~L~vDa--------N~~w---------------~~~~A~~~-~~~L~~~~i-~iEeP~--~~~ 247 (391)
T 4e8g_A 199 VRKVWERI---R-GTGTRLAVDG--------NRSL---------------PSRDALRL-SRECPEIPF-VLEQPC--NTL 247 (391)
T ss_dssp HHHHHHHH---T-TTTCEEEEEC--------TTCC---------------CHHHHHHH-HHHCTTSCE-EEESCS--SSH
T ss_pred HHHHHHHh---C-CCCCeEEEeC--------CCCC---------------CHHHHHHH-HHHHhhcCe-EEecCC--ccH
Confidence 55555555 3 0289999999 5655 46788875 455899999 999995 599
Q ss_pred HHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 344 ~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 248 ~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~~~~~a~d~v~ik~~~~GGit~ 297 (391)
T 4e8g_A 248 EEIAAIRGRVQHGIYLDES-GEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQ 297 (391)
T ss_dssp HHHHHHGGGCCSCEEESTT-CCSHHHHHHHHHTTCCSEEEEEHHHHTSHHH
T ss_pred HHHHHHHhhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 9999999999999999997 5679999999999999999999999999974
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=323.27 Aligned_cols=266 Identities=16% Similarity=0.221 Sum_probs=200.4
Q ss_pred ceEEEEEEEEEe--------cCCC----------CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhH
Q 016156 44 AKVKSVKARQII--------DSRG----------NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----------~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~ 104 (394)
|+|++|+.+.+- .+.+ +++++|+|+|+ |++ |+||+... .+.+
T Consensus 13 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~------~~~~--- 73 (393)
T 2og9_A 13 DRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQ----------GLGFSYSK------RAGG--- 73 (393)
T ss_dssp CCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCE----------EEEEEEEE------STTH---
T ss_pred CeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCE----------EEEEecCc------ccch---
Confidence 899999998882 1221 35799999999 886 99998321 1222
Q ss_pred HHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccc
Q 016156 105 LNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELV 184 (394)
Q Consensus 105 ~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~ 184 (394)
+.....++ .++|.|+|+||.+++++|+.|.+.....+.++++.+|++|||+||||+.||.+|+|||+||| |. +++
T Consensus 74 ~~~~~~i~-~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llG---g~-~~~ 148 (393)
T 2og9_A 74 PGQFAHAR-EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLG---SY-RDS 148 (393)
T ss_dssp HHHHHHHH-HHGGGGTTSCTTCHHHHHHHHHHTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHC---CS-CSE
T ss_pred HHHHHHHH-HHHHHHcCCChhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCc
Confidence 23333355 59999999999999999999987432122235667899999999999999999999999999 65 456
Q ss_pred cceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHH
Q 016156 185 MPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGL 264 (394)
Q Consensus 185 iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l 264 (394)
+| +|+++ |+.+. .+.++ ..+++.++..+||+.+| .|.| . .+.+.+.+.+
T Consensus 149 vp--~y~~~-g~~~~---~~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~~~e~v 197 (393)
T 2og9_A 149 VR--CYNTS-GGFLH---TPIDQ---------LMVNASASIERGIGGIK----LKVG-------Q-----PDGALDIARV 197 (393)
T ss_dssp EE--EEBCT-TCCTT---SCHHH---------HHHHHHHHHHTTCCCEE----EECC-------C-----SCHHHHHHHH
T ss_pred eE--EEEEC-CCcCC---CCHHH---------HHHHHHHHHHcCCCEEE----EecC-------C-----CCHHHHHHHH
Confidence 55 56653 33211 12333 25566666677788777 4432 1 1233345666
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHH
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~ 344 (394)
++||+++ | +|+.|++|+ |+.| +.+++++++. .+++|++.|||||++++|++
T Consensus 198 ~avR~av---g--~d~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~i~~iE~P~~~~~~~ 248 (393)
T 2og9_A 198 TAVRKHL---G--DAVPLMVDA--------NQQW---------------DRPTAQRMCR-IFEPFNLVWIEEPLDAYDHE 248 (393)
T ss_dssp HHHHHHH---C--TTSCEEEEC--------TTCC---------------CHHHHHHHHH-HHGGGCCSCEECCSCTTCHH
T ss_pred HHHHHHc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHH-HHHhhCCCEEECCCCcccHH
Confidence 6666666 3 489999999 5655 5678888655 48999999999999999999
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++|++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 249 ~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 297 (393)
T 2og9_A 249 GHAALALQFDTPIATGEM-LTSAAEHGDLIRHRAADYLMPDAPRVGGITP 297 (393)
T ss_dssp HHHHHHHHCSSCEEECTT-CCSHHHHHHHHHTTCCSEECCCHHHHTSHHH
T ss_pred HHHHHHHhCCCCEEeCCC-cCCHHHHHHHHHCCCCCEEeeCccccCCHHH
Confidence 999999999999999997 5689999999999999999999999999974
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=326.43 Aligned_cols=259 Identities=16% Similarity=0.217 Sum_probs=204.0
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.| +.++.|+|+|+ |++ |+||+.... .+.|.+++..++...
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~~---~p~~~~e~~~~~~~~ 67 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIE----------GWSECVALA---EPTYTEECTDTAWVM 67 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCE----------EEEEECCCS---STTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCE----------EEEecccCC---CCccccccHHHHHHH
Confidence 78999998877 23444 36799999999 886 999975321 146788888888888
Q ss_pred hHHhHhhhhc-------CCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccc
Q 016156 111 INDILGPKLV-------GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKEL 183 (394)
Q Consensus 111 I~~~l~p~Li-------G~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~ 183 (394)
|++.|+|.|+ |+++.+.+++|+.|..+. + ..+|++|||+||||+.||.+|+|||++|| | .++
T Consensus 68 l~~~l~p~l~~~~~~~~G~~~~~~~~~~~~~~~~~-----g--~~~A~said~ALwDl~gk~~g~Pl~~LLG---g-~r~ 136 (388)
T 3qld_A 68 LVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVR-----G--NRMSVAAIEMAVWDWYAARTGQPLVGLLG---G-GRD 136 (388)
T ss_dssp HHHTHHHHHHHHHTSGGGSSCCCGGGGGGGGTTCC-----S--CHHHHHHHHHHHHHHHHHHHTCCHHHHTT---C-CCS
T ss_pred HHHHHHHHHhhhhcccCCCCccCHHHHHHHHHHcc-----C--cHHHHHHHHHHHHHHHHHHcCCcHHHHhC---C-CCC
Confidence 9999999999 999999999988874331 1 25799999999999999999999999999 6 456
Q ss_pred ccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHH
Q 016156 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREG 263 (394)
Q Consensus 184 ~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~ 263 (394)
++|+ |.+++.+ . +. +...+++.+...+||+++| .|.| + +.+.++
T Consensus 137 ~v~~--~~~~~~~--~----~~---------e~~~~~~~~~~~~G~~~~K----~Kv~-------------~--~~d~~~ 180 (388)
T 3qld_A 137 RVEV--SATLGMS--E----SL---------DVLIQSVDAAVEQGFRRVK----LKIA-------------P--GRDRAA 180 (388)
T ss_dssp EEEB--EEEECCC--S----CH---------HHHHHHHHHHHHTTCSEEE----EECB-------------T--TBSHHH
T ss_pred eEEE--eEEecCC--C----CH---------HHHHHHHHHHHHhCCCeEE----EEeC-------------c--HHHHHH
Confidence 7776 4443211 0 11 2235566666777888887 4532 1 123667
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCH
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~ 343 (394)
+++||+++ +++.|++|+ |+.|+ .++++. + +.+++|+|.|||||++++|+
T Consensus 181 v~avR~~~------~~~~l~vDa--------N~~~~---------------~~~A~~-~-~~l~~~~i~~iEeP~~~~d~ 229 (388)
T 3qld_A 181 IKAVRLRY------PDLAIAADA--------NGSYR---------------PEDAPV-L-RQLDAYDLQFIEQPLPEDDW 229 (388)
T ss_dssp HHHHHHHC------TTSEEEEEC--------TTCCC---------------GGGHHH-H-HHGGGGCCSCEECCSCTTCH
T ss_pred HHHHHHHC------CCCeEEEEC--------CCCCC---------------hHHHHH-H-HHHhhCCCcEEECCCCcccH
Confidence 77777775 689999999 67665 445664 3 55899999999999999999
Q ss_pred HHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 344 SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 344 ~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 230 ~~~~~l~~~~~ipIa~dE~-~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~ 279 (388)
T 3qld_A 230 FDLAKLQASLRTPVCLDES-VRSVRELKLTARLGAARVLNVKPGRLGGFGA 279 (388)
T ss_dssp HHHHHHHHHCSSCEEESTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHHHHHHHhCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEECchhhCCHHH
Confidence 9999999999999999997 5679999999999999999999999999984
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=324.18 Aligned_cols=268 Identities=15% Similarity=0.136 Sum_probs=200.8
Q ss_pred ceEEEEEEEEEec---CCCC-ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhh
Q 016156 44 AKVKSVKARQIID---SRGN-PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPK 118 (394)
Q Consensus 44 ~~I~~V~~r~v~~---~~g~-~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~ 118 (394)
|||++|+++.+-- .... ..+.|+|+|| |++ |+||+.... -.|.|.++++ .|++.|+|.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~V~v~td~G~~----------G~GE~~~~~--~~p~~~~e~~-----~i~~~l~p~ 63 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVNKHVIVKIHTDEGLT----------GIGEMSDFS--HLPLYSVDLH-----DLKQGLLSI 63 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEEEEEEEEEEETTSCE----------EEEEECCCS--SSSSCCCCHH-----HHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCcccceEEEEEEECCCCE----------EEecccccc--CCCccchhHH-----HHHHHHHHH
Confidence 8999999988832 1111 4699999999 986 999974320 0134666554 467789999
Q ss_pred hcCCCCCCHHHHHHHHHHhcC-CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCc
Q 016156 119 LVGVDIRDQAEVDAIMLEIDG-TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGS 197 (394)
Q Consensus 119 LiG~dp~~~e~Id~~l~~~~~-~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~ 197 (394)
|+|+||.+++++|+.|.+... ......-+.+|++|||+||||++||.+|+|||+||| |..++++|++ .+++...
T Consensus 64 liG~d~~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~~v~~y--~t~~~~~ 138 (391)
T 3gd6_A 64 LLGQNPFDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLG---GRVKEKIKVC--YPIFRHR 138 (391)
T ss_dssp HTTCCTTCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CCSCSEEEBC--EEECCCS
T ss_pred hCCCCccCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhC---CCcCCeEEee--EEecccc
Confidence 999999999999999987321 111111235799999999999999999999999999 7667788864 4332110
Q ss_pred CCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 016156 198 HAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYT 277 (394)
Q Consensus 198 ~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~ 277 (394)
.. .+. +...+++.+...+||+++| .|.| . +.+.+.+++++||+++ |
T Consensus 139 ~~---~~~---------e~~~~~a~~~~~~G~~~~K----iKvG-------~------~~~~d~~~v~avR~a~---g-- 184 (391)
T 3gd6_A 139 FS---EEV---------ESNLDVVRQKLEQGFDVFR----LYVG-------K------NLDADEEFLSRVKEEF---G-- 184 (391)
T ss_dssp ST---THH---------HHHHHHHHHHHHTTCCEEE----EECS-------S------CHHHHHHHHHHHHHHH---G--
T ss_pred cC---CCH---------HHHHHHHHHHHHcCCCEEE----EeeC-------C------CHHHHHHHHHHHHHHc---C--
Confidence 00 011 2235666667777888887 5533 1 2233456666666666 3
Q ss_pred CCcEEE-EecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCc--eeeeCCCCCCCHHHHHHHHhhcC
Q 016156 278 GKINIG-MDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPI--VSIEDPFDQDDWSSWASLQSSVD 354 (394)
Q Consensus 278 gdi~l~-iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i--~~iEdPl~~~D~~~~~~L~~~~~ 354 (394)
+++.|+ +|+ |+.| +.++++++ .+.+++|++ .|||||++++|++++++|+++++
T Consensus 185 ~~~~l~~vDa--------n~~~---------------~~~~A~~~-~~~l~~~~i~~~~iEqP~~~~d~~~~~~l~~~~~ 240 (391)
T 3gd6_A 185 SRVRIKSYDF--------SHLL---------------NWKDAHRA-IKRLTKYDLGLEMIESPAPRNDFDGLYQLRLKTD 240 (391)
T ss_dssp GGCEEEEEEC--------TTCS---------------CHHHHHHH-HHHHTTCCSSCCEEECCSCTTCHHHHHHHHHHCS
T ss_pred CCCcEEEecC--------CCCc---------------CHHHHHHH-HHHHHhcCCCcceecCCCChhhHHHHHHHHHHcC
Confidence 489999 999 5655 56788875 556999999 99999999999999999999999
Q ss_pred CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 355 IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 355 i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|| ||. ++++++++++++.+++|++++|++++||||+
T Consensus 241 iPI--dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 277 (391)
T 3gd6_A 241 YPI--SEH-VWSFKQQQEMIKKDAIDIFNISPVFIGGLTS 277 (391)
T ss_dssp SCE--EEE-CCCHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred CCc--CCC-CCCHHHHHHHHHcCCCCEEEECchhcCCHHH
Confidence 998 775 5789999999999999999999999999974
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=325.44 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=198.9
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcc-cchhHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVY-GGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~-~g~~~~~a~~ 109 (394)
|+|++|+++.+- .+.| ++.+.|+|+|| |++ |+||+... .+ .+....+ .
T Consensus 10 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~------~~~~~~~~~~--~ 71 (392)
T 3ddm_A 10 ITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAV----------GWGEVWCN------FPACGAEHRA--R 71 (392)
T ss_dssp BCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCE----------EEEECCCC------SSTTHHHHHH--H
T ss_pred CEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCE----------EEEEeccC------CCCCchHHHH--H
Confidence 999999998772 1222 35799999999 986 99997321 11 1222222 2
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHh----cCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccc
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEI----DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVM 185 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~----~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~i 185 (394)
.|++.|+|.|+|+||.+++++|+.|.+. ....+..++..+|++|||+||||+.||.+|+|||+||| |.. +++
T Consensus 72 ~i~~~l~p~liG~d~~~~~~~~~~l~~~~~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~-~~v 147 (392)
T 3ddm_A 72 LVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLG---GSG-DRI 147 (392)
T ss_dssp HHHHTHHHHHTTSCBSSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CSC-CEE
T ss_pred HHHHHHHHHhCCCCcCCHHHHHHHHHhhhhhhhhhcCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCC-Cce
Confidence 4577899999999999999999999863 10011112446799999999999999999999999999 654 677
Q ss_pred ceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHH
Q 016156 186 PVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLV 265 (394)
Q Consensus 186 P~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~ 265 (394)
|+ |++ |.. .+...+++.+...+||+.+| .|.| . +.+.+.++++
T Consensus 148 ~~--y~~---g~~---------------~e~~~~~a~~~~~~G~~~iK----lK~g-------~------~~~~d~~~v~ 190 (392)
T 3ddm_A 148 GV--YAS---GIN---------------PENPEDVVARKAAEGYRAFK----LKVG-------F------DDARDVRNAL 190 (392)
T ss_dssp EE--EEE---EEC---------------SSSHHHHHHHHHHHTCCCEE----EECS-------S------CHHHHHHHHH
T ss_pred eE--Eee---cCC---------------HHHHHHHHHHHHHcCCCEEE----EecC-------C------CHHHHHHHHH
Confidence 76 543 211 12346677777778898888 5533 1 2233455666
Q ss_pred HHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC-HH
Q 016156 266 LLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD-WS 344 (394)
Q Consensus 266 ~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D-~~ 344 (394)
+||+++ | +++.|++|+ |+.| +.++++++ .+.++++++.|||||++++| ++
T Consensus 191 avR~a~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iEeP~~~~d~~~ 241 (392)
T 3ddm_A 191 HVRELL---G--AATPLMADA--------NQGW---------------DLPRARQM-AQRLGPAQLDWLEEPLRADRPAA 241 (392)
T ss_dssp HHHHHH---C--SSSCEEEEC--------TTCC---------------CHHHHHHH-HHHHGGGCCSEEECCSCTTSCHH
T ss_pred HHHHhc---C--CCceEEEeC--------CCCC---------------CHHHHHHH-HHHHHHhCCCEEECCCCccchHH
Confidence 666665 3 489999999 5655 46788875 55699999999999999999 99
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 242 ~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 290 (392)
T 3ddm_A 242 EWAELAQAAPMPLAGGEN-IAGVAAFETALAARSLRVMQPDLAKWGGFSG 290 (392)
T ss_dssp HHHHHHHHCSSCEEECTT-CCSHHHHHHHHHHTCEEEECCCTTTTTHHHH
T ss_pred HHHHHHHhcCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCcchhCCHHH
Confidence 999999999999999997 5789999999999999999999999999974
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=327.13 Aligned_cols=270 Identities=14% Similarity=0.159 Sum_probs=195.6
Q ss_pred ceEEEEEEEEEe-------cCCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII-------DSRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~-------~~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+++.+- ++.| ...+.|+|+|| |++ |+||+. +++ .+...
T Consensus 28 mkIt~i~~~~v~~p~~p~~~~~g~~~~~~~~~~V~v~td~G~~----------G~GE~~----------g~~---~~~~~ 84 (445)
T 3vdg_A 28 IRITGARVTPVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLT----------GLGETY----------ADT---VHLER 84 (445)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEC----------CCH---HHHHH
T ss_pred CEEEEEEEEEEecCCccccccccccccceeEEEEEEEECCCCe----------EEEeCC----------ChH---HHHHH
Confidence 999999999883 2222 23489999999 986 999962 332 33344
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhc-CCC------CCC-----ccchhhHHHHHHHHHHHhHhhcCChhHHHhhccc
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEID-GTP------NKS-----KIGANAILGVSLSVCRAGAGAKGVPLYKHIQELS 178 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~-~~~------~~~-----~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~ 178 (394)
|+ .|+|.|+|+||.+++++|+.|++.- ... .+| .+...|++|||+||||++||.+|+|||+|||
T Consensus 85 i~-~l~p~LiG~d~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLG--- 160 (445)
T 3vdg_A 85 LQ-AAAHAIVGRSVFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLG--- 160 (445)
T ss_dssp HH-HHHHHHTTCBTTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTT---
T ss_pred HH-HHHHHhCCCChhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---
Confidence 54 5999999999999999999998842 111 111 1455799999999999999999999999999
Q ss_pred CCcccccceeeEEeecCCcCCCC--CCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCC
Q 016156 179 GTKELVMPVPAFNVINGGSHAGN--NLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAP 255 (394)
Q Consensus 179 g~~~~~iP~p~~~~i~gG~~~~~--~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~ 255 (394)
|..++++|++.|...... ..++ ....- .+.+++...+++.++..+ ||+++| .|.| ..
T Consensus 161 G~~r~~v~~~a~~~~~~~-~~~g~~~~~~~---~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG------------~~ 220 (445)
T 3vdg_A 161 GAVRDAVPFSAYLFYKWA-AHPGAEPDGWG---AALDPDGIVAQARRMIDEYGFSAIK----LKGG------------VF 220 (445)
T ss_dssp CCSSSEEEBCEEEECBCS-SSTTSCCCSSC---CBCSHHHHHHHHHHHHHHHCCSSEE----EECS------------SS
T ss_pred CCCCCeEEEeeeeccccc-ccCCccccccc---cCCCHHHHHHHHHHHHHhcCCCEEE----ECCC------------CC
Confidence 777888998655321100 0000 00000 001112345666666654 888887 5533 11
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee
Q 016156 256 NVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335 (394)
Q Consensus 256 ~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE 335 (394)
+.+++.+++++||+++ +++.|++|+ |+.| +.++++++. +.+++| +.|||
T Consensus 221 ~~~~Di~~v~avRea~------~d~~L~vDa--------N~~w---------------~~~~Ai~~~-~~L~~~-l~~iE 269 (445)
T 3vdg_A 221 APEEEMAAVEALRAAF------PDHPLRLDP--------NAAW---------------TPQTSVKVA-AGLEGV-LEYLE 269 (445)
T ss_dssp CHHHHHHHHHHHHHHC------TTSCEEEEC--------TTCS---------------CHHHHHHHH-HHTTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHhC------CCCcEEEEC--------CCCC---------------CHHHHHHHH-HHHhhH-HHeee
Confidence 2222344555555544 689999999 5655 567888864 458999 99999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 336 dPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++ |++++++|++++++||++||. +++.++++++++.+++|++|+|++++||||+
T Consensus 270 eP~~--~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~a~div~~d~~~~GGite 325 (445)
T 3vdg_A 270 DPTP--GLDGMAEVAAQAPMPLATNMC-VVAFDQLPAAVAKNSVQVVLSDHHYWGGLQR 325 (445)
T ss_dssp CCSS--SHHHHHHHHHHCSSCEEESSS-CCSGGGHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred CCCC--CHHHHHHHHhcCCCCEEcCCc-CCCHHHHHHHHHcCCCCEEeeCcceeCCHHH
Confidence 9995 899999999999999999997 5789999999999999999999999999984
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=326.45 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=203.8
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+- .+.| +..+.|+|+|+ |++ |+||+... +.|.+++.+.+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLL----------GLGAASPE-----RHVTGETLEACHAA 65 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCE----------EEEEECCC-----HHHHCCCHHHHHHH
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCE----------EEecccCC-----CCcCcCCHHHHHHH
Confidence 899999998871 2333 35799999999 986 99998542 23567777888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|++.- .. ..+|++|||+||||+.||.+|+|||+||| |. ++++|++
T Consensus 66 l~~~l~~~l~G~~~~~~~~~~~~l~~~~-~~-----~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~-~~~v~~~-- 133 (356)
T 3ro6_B 66 LDHDRLGWLMGRDIRTLPRLCRELAERL-PA-----APAARAALDMALHDLVAQCLGLPLVEILG---RA-HDSLPTS-- 133 (356)
T ss_dssp HCGGGCTTTTTCBGGGHHHHHHHHHHHC-TT-----CHHHHHHHHHHHHHHHHHHHTSBHHHHTC---CC-CSCEEBC--
T ss_pred HHHHhHHHhcCCCccCHHHHHHHHHHhh-cc-----chhHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCceeee--
Confidence 8888999999999999999999998631 11 24799999999999999999999999999 65 5567764
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++.+ +. +...+++.++..+||+.+| .|.| .+.+.+.+++++||++
T Consensus 134 ~~~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----~K~G-------------~~~~~d~~~v~avR~~ 180 (356)
T 3ro6_B 134 VTIGIK-------PV---------EETLAEAREHLALGFRVLK----VKLC-------------GDEEQDFERLRRLHET 180 (356)
T ss_dssp EEECSC-------CH---------HHHHHHHHHHHHTTCCEEE----EECC-------------SCHHHHHHHHHHHHHH
T ss_pred EEEcCC-------CH---------HHHHHHHHHHHHcCCCEEE----EEeC-------------CCHHHHHHHHHHHHHH
Confidence 333211 11 2235666667777888887 5533 1223345566666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++++++|+
T Consensus 181 ~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~ 231 (356)
T 3ro6_B 181 L---A--GRAVVRVDP--------NQSY---------------DRDGLLRL-DRLVQELGIEFIEQPFPAGRTDWLRALP 231 (356)
T ss_dssp H---T--TSSEEEEEC--------TTCC---------------CHHHHHHH-HHHHHHTTCCCEECCSCTTCHHHHHTSC
T ss_pred h---C--CCCEEEEeC--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEECCCCCCcHHHHHHHH
Confidence 5 3 489999999 5655 46788875 4558999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcC-CCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKK-SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~-a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. ++++++++++++.+ ++|++|+|++++||||+
T Consensus 232 ~~~~iPIa~dE~-~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 275 (356)
T 3ro6_B 232 KAIRRRIAADES-LLGPADAFALAAPPAACGIFNIKLMKCGGLAP 275 (356)
T ss_dssp HHHHHTEEESTT-CCSHHHHHHHHSSSCSCSEEEECHHHHCSHHH
T ss_pred hcCCCCEEeCCc-CCCHHHHHHHHhcCCcCCEEEEcccccCCHHH
Confidence 999999999997 56799999999999 99999999999999984
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=328.74 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=182.7
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcC
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDG 139 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~ 139 (394)
.+|.|+|+|| |++ |+||+. .+ ..++..|.+.|+|.|+|+||.++++||+.|++...
T Consensus 65 ~~vlV~V~tddGi~----------G~Ge~~----------~~---~~~~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~ 121 (455)
T 3fxg_A 65 GSFLVEIEATDGTV----------GFATGF----------GG---PPACWLVHQHFERFLIGADPRNTNLLFEQMYRASM 121 (455)
T ss_dssp CEEEEEEEETTSCE----------EEEEEE----------CH---HHHHHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTT
T ss_pred eEEEEEEEECCCCE----------EEEeCc----------CC---HHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHhhh
Confidence 4599999999 986 999863 12 23445677889999999999999999999987422
Q ss_pred CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHH
Q 016156 140 TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFA 219 (394)
Q Consensus 140 ~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ 219 (394)
..++++...+|++|||+||||++||.+|+|||+||| |..++++|+ |.+ |+ ..+
T Consensus 122 ~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG---G~~rd~vp~--y~~--g~--------------------~~~ 174 (455)
T 3fxg_A 122 FYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIG---GATKERLDF--YCT--GP--------------------EPT 174 (455)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTT---CCSCSEEEE--EEE--SS--------------------CHH
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CccCCeeEE--eec--CC--------------------CHH
Confidence 222234446799999999999999999999999999 777788886 432 21 011
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeee
Q 016156 220 EALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYD 299 (394)
Q Consensus 220 ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~ 299 (394)
.+ ..+||+++| .|.|..+ . +|. .+++.+.+++++||+++ | +++.|++|+ |+.|
T Consensus 175 ~~---~~~Gf~~~K----lKv~~~~-~---~G~--~~~~~di~rv~avRea~---G--~d~~L~vDa--------N~~w- 227 (455)
T 3fxg_A 175 AA---KAMGFWGGK----VPLPFCP-D---DGH--EGLRKNVEFLRKHREAV---G--PDFPIMVDC--------YMSL- 227 (455)
T ss_dssp HH---HHHTCSCEE----EECCCCG-G---GHH--HHHHHHHHHHHHHHHHH---C--SSSCEEEEC--------TTCC-
T ss_pred HH---HHcCCCEEE----EcCCCCc-c---ccc--ccHHHHHHHHHHHHHHh---C--CCCeEEEeC--------CCCC-
Confidence 22 345688777 4432100 0 000 11223455566666665 3 489999999 5655
Q ss_pred ccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcC-CeEEecCccccCHHHHHHHHhcCC
Q 016156 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVD-IQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~-i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
+..+++++ .+.+++|+|.|||||++++|+++|++|++++. +||++||.. .++++++++++.++
T Consensus 228 --------------t~~~Ai~~-~~~Le~~~l~~iEEPl~~dd~~~la~L~~~~~~iPIA~gEs~-~s~~d~~~li~~~a 291 (455)
T 3fxg_A 228 --------------NVSYTIEL-VKACLDLNINWWEECLSPDDTDGFALIKRAHPTVKFTTGEHE-YSRYGFRKLVEGRN 291 (455)
T ss_dssp --------------CHHHHHHH-HHHTGGGCCSEEECCSCGGGGGGHHHHHHHCTTSEEEECTTC-CHHHHHHHHHTTCC
T ss_pred --------------CHHHHHHH-HHhcccCCcceecCCCCcchHHHHHHHHHhCCCCeEECCCcc-CCHHHHHHHHHcCC
Confidence 56788885 45589999999999999999999999999985 899999974 57999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 292 vDiiq~d~~~~GGIte 307 (455)
T 3fxg_A 292 LDIIQPDVMWLGGLTE 307 (455)
T ss_dssp CSEECCCTTTSSCHHH
T ss_pred CCEEEECccccCCHHH
Confidence 9999999999999984
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=322.03 Aligned_cols=260 Identities=18% Similarity=0.252 Sum_probs=202.4
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+- .+.| +..+.|+|+|+ |++ |+||+... +.|.+++...+...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHI----------GYGECSPF-----MTIHGESMDTAFIV 65 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCE----------EEEEECCC-----HHHHSCCHHHHHHH
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCE----------EEeeccCC-----CCcCCCCHHHHHHH
Confidence 899999988771 2333 35799999999 986 99998542 23556677777766
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccc-ceee
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVM-PVPA 189 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~i-P~p~ 189 (394)
++ .++|.|+|+||.+++++|+.|++.. .+ ..+|++|||+||||+.||.+|+|||+||| |. +.++ |+.
T Consensus 66 ~~-~l~~~l~G~d~~~~~~~~~~l~~~~-~~-----~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~-~~~v~~~~- 133 (368)
T 3q45_A 66 GQ-YLAKGLIGTSCLDIVSNSLLMDAII-YG-----NSCIKSAFNIALYDLAAQHAGLPLYAFLG---GK-KDKIIQTD- 133 (368)
T ss_dssp HH-HHHHHHTTSBTTCHHHHHHHHHHHC-SC-----CHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CC-CCSCEEBC-
T ss_pred HH-HHHHHhcCCChhhHHHHHHHHHHHh-cC-----CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCeeeeeE-
Confidence 64 7999999999999999999998732 11 14799999999999999999999999999 65 3466 553
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
..++.+ +. +...+++.+...+||+++| .|.| . +.+.+.+++++||+
T Consensus 134 -~~~~~~-------~~---------e~~~~~a~~~~~~G~~~~K----~KvG-------~------~~~~d~~~v~avR~ 179 (368)
T 3q45_A 134 -YTVSID-------EP---------HKMAADAVQIKKNGFEIIK----VKVG-------G------SKELDVERIRMIRE 179 (368)
T ss_dssp -EEECSC-------CH---------HHHHHHHHHHHHTTCSEEE----EECC-------S------CHHHHHHHHHHHHH
T ss_pred -EEecCC-------CH---------HHHHHHHHHHHHcCCCeEE----EEec-------C------CHHHHHHHHHHHHH
Confidence 322211 11 2235667777777888888 5533 1 12334556666666
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++ | +++.|++|+ |+.| +.++++++. +.++++++.|||||++++|++++++|
T Consensus 180 ~~---g--~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l 230 (368)
T 3q45_A 180 AA---G--DSITLRIDA--------NQGW---------------SVETAIETL-TLLEPYNIQHCEEPVSRNLYTALPKI 230 (368)
T ss_dssp HH---C--SSSEEEEEC--------TTCB---------------CHHHHHHHH-HHHGGGCCSCEECCBCGGGGGGHHHH
T ss_pred Hh---C--CCCeEEEEC--------CCCC---------------ChHHHHHHH-HHHhhcCCCEEECCCChhHHHHHHHH
Confidence 65 3 489999999 5655 467888754 55899999999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 231 ~~~~~iPIa~dE~-~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~ 274 (368)
T 3q45_A 231 RQACRIPIMADES-CCNSFDAERLIQIQACDSFNLKLSKSAGITN 274 (368)
T ss_dssp HHTCSSCEEESTT-CCSHHHHHHHHHTTCCSEEEECTTTTTSHHH
T ss_pred HhhCCCCEEEcCC-cCCHHHHHHHHHcCCCCeEEechhhcCCHHH
Confidence 9999999999997 5789999999999999999999999999974
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=323.65 Aligned_cols=277 Identities=18% Similarity=0.151 Sum_probs=200.0
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|||++|++..+ +..+++.+.|+|+|| |++ |+||+.. .|+.+++. ..+ +.|+|.|+|+
T Consensus 3 MkI~~i~~~~~-~~~~~~~~~V~v~td~G~~----------G~GE~~~-------~~~~~~~~---~~i-~~l~p~liG~ 60 (409)
T 3go2_A 3 LKVVSVDTLCC-DAGWRNYHFVKLTTDEGIV----------GWSEFDE-------GFGSPGVT---AVI-EQLGKRLVGA 60 (409)
T ss_dssp CBEEEEEEEEE-ECSSSEEEEEEEEETTCCE----------EEEEECS-------TTTCTTHH---HHH-HHHHHHHTTS
T ss_pred CEEEEEEEEEE-CCCCccEEEEEEEECCCCE----------EEEeecC-------CCCcHHHH---HHH-HHHHHHhcCC
Confidence 89999999876 555567899999999 986 9999742 24444433 334 4699999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcC----
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSH---- 198 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~---- 198 (394)
||.+++++|+.|++... ++.+++..+|++|||+||||++||.+|+|||+||| |..++++|+ |.+..+|..
T Consensus 61 d~~~~e~~~~~~~~~~~-~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLG---G~~r~~v~~--y~s~~~~~~i~~~ 134 (409)
T 3go2_A 61 SVMEHERFFAEAYCLTR-PATGGVVSEGIGAIENALLDAKAKTLNVPCYELLG---GKLRDRVPV--YWSHCPTWRINHP 134 (409)
T ss_dssp BTTCHHHHHHHHHHHHG-GGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTT---CCSCSEEEE--EECSTTHHHHHCT
T ss_pred ChhhHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcC---CCCCCeEEE--EEeecCccccccc
Confidence 99999999999987321 23345667899999999999999999999999999 776788886 433211110
Q ss_pred ---CCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCc------ccCCCCCCCCCCC-------ChHH
Q 016156 199 ---AGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDAC------NVGDEGGFAPNVQ-------DNRE 262 (394)
Q Consensus 199 ---~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~------~vg~~g~~~~~~~-------~~~~ 262 (394)
.++..+. +...+++.+...+||+++| .|.+.... ..|..+-+.++.+ .+.+
T Consensus 135 ~~~~~~~~~~---------e~~~~~a~~~~~~Gf~~iK----lKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e 201 (409)
T 3go2_A 135 KFFGPPVTDL---------DGVKRTAEEARERQFRAIK----TNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRA 201 (409)
T ss_dssp TTSSSCCCSH---------HHHHHHHHHHHHTTCCEEE----ECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHH
T ss_pred cccccCCCCH---------HHHHHHHHHHHHcCCCEEE----EcccccccccccccccCCCccCCcccccchHHHHHHHH
Confidence 0000011 2234556666677888888 45310000 0011100112221 1234
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D 342 (394)
++++||+++ | +|+.|++|+ |+.| |.++++++ .+.++++++.|||+|+ +|
T Consensus 202 ~v~avR~av---G--~d~~l~vDa--------N~~~---------------~~~~A~~~-~~~L~~~~i~~iE~P~--~d 250 (409)
T 3go2_A 202 HLEALRDGA---G--PDVEILLDL--------NFNA---------------KPEGYLKI-LRELADFDLFWVEIDS--YS 250 (409)
T ss_dssp HHHHHHHHH---C--TTSEEEEEC--------TTCS---------------CHHHHHHH-HHHTTTSCCSEEECCC--SC
T ss_pred HHHHHHHHh---C--CCCEEEEEC--------CCCC---------------CHHHHHHH-HHHHhhcCCeEEEeCc--CC
Confidence 566666665 3 499999999 5655 56788885 4558999999999997 49
Q ss_pred HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 343 ~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++|++++++||++||. +.++++++++++.+++|++|+|+++ ||||+
T Consensus 251 ~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~d~v~~k~~~-GGit~ 300 (409)
T 3go2_A 251 PQGLAYVRNHSPHPISSCET-LFGIREFKPFFDANAVDVAIVDTIW-NGVWQ 300 (409)
T ss_dssp HHHHHHHHHTCSSCEEECTT-CCHHHHHHHHHHTTCCSEEEECHHH-HCHHH
T ss_pred HHHHHHHHhhCCCCEEeCCC-cCCHHHHHHHHHhCCCCEEEeCCCC-CCHHH
Confidence 99999999999999999997 4679999999999999999999999 99984
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=315.87 Aligned_cols=263 Identities=14% Similarity=0.193 Sum_probs=201.6
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.+ +++++|+|+|+ |++ |+||+... .+++. ++.+.
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~----------G~Ge~~~~--------~~~~~-~~~~~ 64 (359)
T 1mdl_A 4 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVV----------GHSYLFAY--------TPVAL-KSLKQ 64 (359)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEECS--------SGGGH-HHHHH
T ss_pred CEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCE----------EEEEeecC--------CCchH-HHHHH
Confidence 89999998877 23444 25699999999 886 99998531 23344 66777
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.|+|.|+|+||.+++++ +.|++.....++.++..+|++|||+||||+.||.+|+|||+||| |. ++++|+ |
T Consensus 65 i~~~l~~~l~g~d~~~~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llG---g~-~~~vp~--~ 137 (359)
T 1mdl_A 65 LLDDMAAMIVNEPLAPVSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLG---AN-ARPVQA--Y 137 (359)
T ss_dssp HHHHHHHHHTTSBSCHHHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTT---CC-CCCEEE--E
T ss_pred HHHHHHHHHCCCCccchHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhC---CC-CCCeee--e
Confidence 88889999999999999999 88876321111124567899999999999999999999999999 65 566665 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
++ +|. .+.++ ..+++.++..+||+.+| .|.| . .+.+.+.+.++.||++
T Consensus 138 ~~--~g~-----~~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~~~~e~v~avr~a 185 (359)
T 1mdl_A 138 DS--HSL-----DGVKL---------ATERAVTAAELGFRAVK----TRIG-------Y-----PALDQDLAVVRSIRQA 185 (359)
T ss_dssp EE--CCS-----CHHHH---------HHHHHHHHHHTTCSEEE----EECC-------C-----SSHHHHHHHHHHHHHH
T ss_pred ee--cCC-----CCHHH---------HHHHHHHHHHcCCCEEE----EecC-------C-----CCHHHHHHHHHHHHHH
Confidence 44 231 12232 24566666667787777 4432 1 1223345566666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +|+.|++|+ |+.| +.+++++++. .+++|++.|||||++++|+++|++|+
T Consensus 186 ~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~i~~iE~P~~~~~~~~~~~l~ 236 (359)
T 1mdl_A 186 V---G--DDFGIMVDY--------NQSL---------------DVPAAIKRSQ-ALQQEGVTWIEEPTLQHDYEGHQRIQ 236 (359)
T ss_dssp H---C--SSSEEEEEC--------TTCS---------------CHHHHHHHHH-HHHHHTCSCEECCSCTTCHHHHHHHH
T ss_pred h---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHH-HHHHhCCCeEECCCChhhHHHHHHHH
Confidence 5 3 489999999 5545 5678888654 48999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||.. .++++++++++.+++|++++|++++||+|+
T Consensus 237 ~~~~iPI~~de~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~ 279 (359)
T 1mdl_A 237 SKLNVPVQMGENW-LGPEEMFKALSIGACRLAMPDAMKIGGVTG 279 (359)
T ss_dssp HTCSSCEEECTTC-CSHHHHHHHHHTTCCSEECCBTTTTTHHHH
T ss_pred HhCCCCEEeCCCC-CCHHHHHHHHHcCCCCEEeecchhhCCHHH
Confidence 9999999999975 679999999999999999999999999974
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=325.40 Aligned_cols=270 Identities=14% Similarity=0.200 Sum_probs=195.6
Q ss_pred ceEEEEEEEEEe-------cCCC--C---ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII-------DSRG--N---PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~-------~~~g--~---~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.+- ++.| . ..+.|+|+|| |++ |+||+. +++ .+...
T Consensus 23 mkI~~i~~~~v~~P~~~~~~~~g~~~~~~~~~~V~v~td~G~~----------G~GE~~----------g~~---~v~~~ 79 (441)
T 3vc5_A 23 MLIREVRVTPVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGIT----------GLGETY----------GDL---AHLEQ 79 (441)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTCCE----------EEEEEE----------CCH---HHHHH
T ss_pred cEEEEEEEEEEecCCcccccccCccccceeEEEEEEEECCCCE----------EEEeCC----------ChH---HHHHH
Confidence 999999999883 2222 2 2489999999 986 999973 232 33444
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHh-cCCC------CCC-c----cchhhHHHHHHHHHHHhHhhcCChhHHHhhccc
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEI-DGTP------NKS-K----IGANAILGVSLSVCRAGAGAKGVPLYKHIQELS 178 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~-~~~~------~~~-~----ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~ 178 (394)
|+ .++|.|+|+||.+++++|+.|++. .... .+| . +...|++|||+||||+.||.+|+|||+|||
T Consensus 80 i~-~l~p~LiG~d~~~~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG--- 155 (441)
T 3vc5_A 80 VR-AAAARLPGLDVYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLG--- 155 (441)
T ss_dssp HH-HHHHTCTTSBTTCHHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---
T ss_pred HH-HHHHHhCCCChhHHHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---
Confidence 54 599999999999999999999874 1111 111 0 445799999999999999999999999999
Q ss_pred CCcccccceeeEEeecCCcCCCCC--CcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCC
Q 016156 179 GTKELVMPVPAFNVINGGSHAGNN--LAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAP 255 (394)
Q Consensus 179 g~~~~~iP~p~~~~i~gG~~~~~~--l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~ 255 (394)
|..++++|++.|...... ..++. ...-. +.+++...+++.++..+ ||+++| .|.| ..
T Consensus 156 G~~rd~v~~~a~~~~~~~-~~~g~~~~~~~~---~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG------------~~ 215 (441)
T 3vc5_A 156 GKVRDAVPYSAYLFYKWA-GHPGKPEDRFGP---ALDPDGIVAQARLLIGEYGFRSIK----LKGG------------VF 215 (441)
T ss_dssp CCSSSEEEBCEEEECBCS-BCTTSCBCTTCC---BCSHHHHHHHHHHHHHHHCCSSEE----EECS------------SS
T ss_pred CCCCCeEEEEEeeccccc-cCCCcccccccc---CCCHHHHHHHHHHHHHhcCCCEEE----EccC------------CC
Confidence 777888998655321100 00000 00000 01112345566666654 888887 5533 11
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee
Q 016156 256 NVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE 335 (394)
Q Consensus 256 ~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE 335 (394)
+.+++.+++++||+++ +++.|++|+ |+.| +.++++++. +.+++| +.|||
T Consensus 216 ~~~~Di~rv~avRea~------pd~~L~vDa--------N~~w---------------~~~~Ai~~~-~~L~~~-l~~iE 264 (441)
T 3vc5_A 216 PPEQEAEAIQALRDAF------PGLPLRLDP--------NAAW---------------TVETSIRVG-RALDGV-LEYLE 264 (441)
T ss_dssp CHHHHHHHHHHHHHHS------TTCCEEEEC--------TTCS---------------CHHHHHHHH-HHTTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHhC------CCCcEeccC--------CCCC---------------CHHHHHHHH-HHHHHH-HHHhh
Confidence 2222344555555554 689999999 5655 567888864 458999 99999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 336 DPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 336 dPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++ |++++++|++++++||++||. +++.++++++++.+++|++|+|++++||||+
T Consensus 265 eP~~--~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~a~dii~~d~~~~GGite 320 (441)
T 3vc5_A 265 DPTP--GIDGMARVAAEVPMPLATNMC-VVTPEHLPAAVERRPIGVLLIDHHYWGGLVR 320 (441)
T ss_dssp CCSS--SHHHHHHHHTTSSSCEEESSS-CCSGGGHHHHHHHCCCSEEEECHHHHTSHHH
T ss_pred ccCC--CHHHHHHHHhcCCCCEEeCCC-CCCHHHHHHHHHhCCCCEEeechhhcCCHHH
Confidence 9985 899999999999999999997 5789999999999999999999999999985
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=321.86 Aligned_cols=264 Identities=15% Similarity=0.180 Sum_probs=199.3
Q ss_pred ceEEEEEEEEEe---cC-------CC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQII---DS-------RG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v~---~~-------~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+- .. .+ +..+.|+|+|| |++ |+||+.. +.+. .+++.
T Consensus 3 MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~----------G~GE~~~------~~~~---~~~~~ 63 (389)
T 3ozy_A 3 LKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVT----------GVGSPSG------PYDL---AVLKR 63 (389)
T ss_dssp CCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCC----------EEECCCS------SSCH---HHHHH
T ss_pred CEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCE----------EEEecCC------CCCc---hHHHH
Confidence 899999998872 11 11 35799999999 886 9999741 1122 33444
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHh---cCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccc-
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEI---DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELV- 184 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~---~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~- 184 (394)
..+++ |+|.|+|+||.+++++|+.|++. .+.+ .+++..+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 64 ~~i~~-l~p~l~G~d~~~~~~~~~~l~~~~~~~~~g-~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLG---g~~r~~~ 138 (389)
T 3ozy_A 64 AIEDV-IGPQLIGEDPANINYLWHKVFHGEVSRNLG-HRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLG---GKFHTRG 138 (389)
T ss_dssp HHHHT-THHHHTTSCTTCHHHHHHHHHHHTHHHHHC-SBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---SCSSTTC
T ss_pred HHHHH-HHHHHcCCCcchHHHHHHHHHhhhhhhccC-CchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhC---CcccCCc
Confidence 44554 99999999999999999999863 1111 234556799999999999999999999999999 766677
Q ss_pred cceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHH
Q 016156 185 MPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGL 264 (394)
Q Consensus 185 iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l 264 (394)
+|+ |+++.| + . .+. +...+++.+...+||+.+| .|.| . +.+.+.+.+
T Consensus 139 v~~--y~~~~~-~-~---~~~---------e~~~~~a~~~~~~G~~~iK----iKvG-------~------~~~~d~~~v 185 (389)
T 3ozy_A 139 VRA--YASSIY-W-D---LTP---------DQAADELAGWVEQGFTAAK----LKVG-------R------APRKDAANL 185 (389)
T ss_dssp EEE--EEEEEC-S-S---CCH---------HHHHHHHHHHHHTTCSEEE----EECC-------S------CHHHHHHHH
T ss_pred eee--EEecCC-C-C---CCH---------HHHHHHHHHHHHCCCCEEe----eccC-------C------CHHHHHHHH
Confidence 776 444311 1 0 011 1234566666667888887 5533 1 233345566
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHH
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~ 344 (394)
++||+++ | +|+.|++|+ |+.| +.++++++ .+.++++++.|||||++++|++
T Consensus 186 ~avR~a~---g--~d~~l~vDa--------n~~~---------------~~~~A~~~-~~~l~~~~i~~iEqP~~~~d~~ 236 (389)
T 3ozy_A 186 RAMRQRV---G--ADVEILVDA--------NQSL---------------GRHDALAM-LRILDEAGCYWFEEPLSIDDIE 236 (389)
T ss_dssp HHHHHHH---C--TTSEEEEEC--------TTCC---------------CHHHHHHH-HHHHHHTTCSEEESCSCTTCHH
T ss_pred HHHHHHc---C--CCceEEEEC--------CCCc---------------CHHHHHHH-HHHHHhcCCCEEECCCCcccHH
Confidence 6666665 3 489999999 5655 46788875 4558999999999999999999
Q ss_pred HHHHHH-hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQ-SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~-~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++|+ +++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 237 ~~~~l~~~~~~iPIa~dE~-i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 286 (389)
T 3ozy_A 237 GHRILRAQGTPVRIATGEN-LYTRNAFNDYIRNDAIDVLQADASRAGGITE 286 (389)
T ss_dssp HHHHHHTTCCSSEEEECTT-CCHHHHHHHHHHTTCCSEECCCTTTSSCHHH
T ss_pred HHHHHHhcCCCCCEEeCCC-CCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 999999 999999999997 5679999999999999999999999999974
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=314.20 Aligned_cols=257 Identities=16% Similarity=0.174 Sum_probs=203.4
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.| +++++|+|+|+ |++ |+||+... +.|.++++..+...
T Consensus 2 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 66 (345)
T 2zad_A 2 SRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVK----------GYGEASPS-----FRVNGERVEALLAI 66 (345)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCC-----HHHHCCCHHHHHHT
T ss_pred CEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCE----------EEEEecCC-----CCcCCCCHHHHHHH
Confidence 789999987771 2333 36799999999 886 99998542 24567788888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++ ++|.|+|+||.+++++|+.| +. . +.+.+|++|||+||||+.||.+|+|||+||| | .++++|++
T Consensus 67 i~~-l~~~l~g~d~~~~~~~~~~l-~~--~----~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g-~~~~v~~~-- 132 (345)
T 2zad_A 67 ENA-VREMITGIDVRNYARIFEIT-DR--L----FGFPSLKAAVQFATLDALSQELGTQVCYLLG---G-KRDEIETD-- 132 (345)
T ss_dssp HHH-HHHHHTTCBGGGHHHHHHHH-TT--C----TTSHHHHHHHHHHHHHHHHHHHTSCHHHHTT---C-CCSEEEBC--
T ss_pred HHH-HHHHhCCCChhhHHHHHHHH-HH--h----ccchHHHHHHHHHHHHHHHHHcCCcHHHHhC---C-CCCceeee--
Confidence 888 99999999999999999999 31 1 1346899999999999999999999999999 7 46777775
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++++ +.++ ..+++.++..+||+.+| .|.| . +.++.++.+ ++
T Consensus 133 ~~~~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~---------~~~~d~~~v-~a 175 (345)
T 2zad_A 133 KTVGID-------TVEN---------RVKEAKKIFEEGFRVIK----IKVG-------E---------NLKEDIEAV-EE 175 (345)
T ss_dssp EEECSC-------CHHH---------HHHHHHHHHHTTCSEEE----EECC-------S---------CHHHHHHHH-HH
T ss_pred EEecCC-------CHHH---------HHHHHHHHHHcCcCEEE----Eeec-------C---------CHHHHHHHH-HH
Confidence 344332 1222 25667777777888887 4422 1 134456665 55
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCce--eeeCCCCCCCHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIV--SIEDPFDQDDWSSWAS 348 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~--~iEdPl~~~D~~~~~~ 348 (394)
++++| +++.|++|+ |+.| +.++++++. +.+++|++. |||||++++|+++|++
T Consensus 176 vr~~g--~~~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i~~~~iE~P~~~~~~~~~~~ 229 (345)
T 2zad_A 176 IAKVT--RGAKYIVDA--------NMGY---------------TQKEAVEFA-RAVYQKGIDIAVYEQPVRREDIEGLKF 229 (345)
T ss_dssp HHHHS--TTCEEEEEC--------TTCS---------------CHHHHHHHH-HHHHHTTCCCSEEECCSCTTCHHHHHH
T ss_pred HHhhC--CCCeEEEEC--------CCCC---------------CHHHHHHHH-HHHHhcCCCeeeeeCCCCcccHHHHHH
Confidence 55555 689999999 5555 567888865 458999999 9999999999999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. +.++++++++++.+++|++++|+++ ||||+
T Consensus 230 l~~~~~ipia~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~ 273 (345)
T 2zad_A 230 VRFHSPFPVAADES-ARTKFDVMRLVKEEAVDYVNIKLMK-SGISD 273 (345)
T ss_dssp HHHHSSSCEEESTT-CCSHHHHHHHHHHTCCSEEEECHHH-HHHHH
T ss_pred HHHhCCCCEEEeCC-cCCHHHHHHHHHhCCCCEEEEeccc-ccHHH
Confidence 99999999999997 4689999999999999999999999 99974
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=326.00 Aligned_cols=268 Identities=17% Similarity=0.156 Sum_probs=195.5
Q ss_pred hcCCcceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHH
Q 016156 39 TASSSAKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVL 105 (394)
Q Consensus 39 ~f~~~~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~ 105 (394)
||+.-|+|++|+++.+- .+.| ...+.|+|+|| |++ |+||+.. ++.
T Consensus 19 ~~~~mMkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~----------G~GE~~~----------g~~-- 76 (398)
T 4dye_A 19 YFQSMMKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVE----------GWGETMW----------GAP-- 76 (398)
T ss_dssp ----CCCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEEC----------SHH--
T ss_pred ccCCCceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCE----------EEEeecC----------chH--
Confidence 35666999999998872 3434 35799999999 986 9999742 222
Q ss_pred HHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccc
Q 016156 106 NAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVM 185 (394)
Q Consensus 106 ~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~i 185 (394)
+...| +.++|.|+|+||.+++++|+.|.+... ..+..+.+|++|||+||||++||.+|+|||+||| |..++++
T Consensus 77 -~~~~i-~~l~p~liG~d~~~~~~~~~~l~~~~~--~~g~~~~~A~said~ALwDl~gK~~g~Pl~~LLG---g~~r~~v 149 (398)
T 4dye_A 77 -VAAIV-RRMAPDLIGTSPFALEAFHRKQHMVPF--FYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLG---GAVRDEV 149 (398)
T ss_dssp -HHHHH-HHHHHHHTTCCTTCHHHHHHHTTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEE
T ss_pred -HHHHH-HHHHHHHcCCCccCHHHHHHHHHhhhh--hhccccHHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCcCCeE
Confidence 33445 679999999999999999999953100 0012345899999999999999999999999999 7767788
Q ss_pred ceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHH
Q 016156 186 PVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGL 264 (394)
Q Consensus 186 P~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l 264 (394)
|++ .++.. ...++..... .++...+++.++..+ ||+++| .|.| .+.+.+.+++
T Consensus 150 ~~y--~s~~~-~~~~g~~~~~------~~e~~~~~a~~~~~~~G~~~~K----~KvG-------------~~~~~d~~~v 203 (398)
T 4dye_A 150 PIT--ALITR-ADAPGATPAD------LPKAMAEHAVRVVEEGGFDAVK----LKGT-------------TDCAGDVAIL 203 (398)
T ss_dssp EBE--EEECG-GGSTTCCTTT------HHHHHHHHHHHHHHHHCCSEEE----EECC-------------SCHHHHHHHH
T ss_pred EEE--EEEec-cccCCcccCC------CHHHHHHHHHHHHHhcCCCEEE----EecC-------------CCHHHHHHHH
Confidence 864 44311 0000100000 002235566777777 888887 5532 1122234455
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHH
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~ 344 (394)
++||+++ +++.|++|+ |+.| +.++++++ .+.+++|++.|||||++ |++
T Consensus 204 ~avR~~~------~~~~l~vDa--------N~~w---------------~~~~A~~~-~~~l~~~~i~~iEqP~~--d~~ 251 (398)
T 4dye_A 204 RAVREAL------PGVNLRVDP--------NAAW---------------SVPDSVRA-GIALEELDLEYLEDPCV--GIE 251 (398)
T ss_dssp HHHHHHC------TTSEEEEEC--------TTCS---------------CHHHHHHH-HHHHGGGCCSEEECCSS--HHH
T ss_pred HHHHHhC------CCCeEEeeC--------CCCC---------------CHHHHHHH-HHHHhhcCCCEEcCCCC--CHH
Confidence 5555543 689999999 5655 56788875 45589999999999999 999
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++|++++++||++||. ++++++++++++.+++|++|+|++++||||+
T Consensus 252 ~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 300 (398)
T 4dye_A 252 GMAQVKAKVRIPLCTNMC-VVRFEDFAPAMRLNAVDVIHGDVYKWGGIAA 300 (398)
T ss_dssp HHHHHHHHCCSCEEESSS-CCSGGGHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred HHHHHHhhCCCCEEeCCc-CCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 999999999999999997 5789999999999999999999999999974
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=318.48 Aligned_cols=259 Identities=18% Similarity=0.246 Sum_probs=200.2
Q ss_pred ceEEEEEEEEEe---c------CCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQII---D------SRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v~---~------~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+- . +.+ +++++|+|+|+ |++ |+||+... .+.|.+++..++.
T Consensus 4 MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~----~~~~~~~~~~~~~ 69 (371)
T 2ps2_A 4 LKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIE----------GWGESTPF----GSNYIASHPRGVR 69 (371)
T ss_dssp CCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCE----------EEEEECCS----TTTSSSCCHHHHH
T ss_pred CEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCE----------EEEEEecC----CcccCCCCHHHHH
Confidence 899999998773 1 112 24699999999 876 99998543 1357788888888
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccccee
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p 188 (394)
..|++ ++|.|+|+||.+++++|+.|.+.. . ...+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 70 ~~i~~-l~~~l~g~d~~~~~~~~~~l~~~~-~-----~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~vp~- 138 (371)
T 2ps2_A 70 AGIAT-MAPSLIGLDPRRVDRINDAMDDAL-L-----GHEDAKTAIDVACWDIFGKSVGLPVCELLG---GRTNTRLPL- 138 (371)
T ss_dssp HHHHH-HHHHHTTSCTTCHHHHHHHHHHHC-S-----SCHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCCSSCEEB-
T ss_pred HHHHH-HHHHHCCCCcccHHHHHHHHHHHh-c-----ccHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCceEE-
Confidence 88887 999999999999999999998631 1 135899999999999999999999999999 755566664
Q ss_pred eEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 189 ~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
|++++++ +.++ ..+++.++..+||+.+| .|.| . +.+.+.+.++.||
T Consensus 139 -~~~~~~~-------~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~------~~~~~~e~v~avr 184 (371)
T 2ps2_A 139 -ISSIYVG-------EPED---------MRARVAKYRAKGYKGQS----VKIS-------G------EPVTDAKRITAAL 184 (371)
T ss_dssp -EEEECSC-------CHHH---------HHHHHHHHHTTTCCEEE----EECC-------S------CHHHHHHHHHHHT
T ss_pred -EEEeCCC-------CHHH---------HHHHHHHHHHhChheEE----eecC-------C------CHHHHHHHHHHHH
Confidence 6665432 1222 35566666666777777 4422 1 1222233444444
Q ss_pred HHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh-hcCCceeeeCCCCCCCHHHHH
Q 016156 269 DAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV-RDFPIVSIEDPFDQDDWSSWA 347 (394)
Q Consensus 269 ~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l-~~~~i~~iEdPl~~~D~~~~~ 347 (394)
+++ | +|+.|++|+ |+.| +.+++++++.+ + ++|++ |||||++ |+++|+
T Consensus 185 ~a~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~~-l~~~~~i-~iE~P~~--~~~~~~ 232 (371)
T 2ps2_A 185 ANQ---Q--PDEFFIVDA--------NGKL---------------SVETALRLLRL-LPHGLDF-ALEAPCA--TWRECI 232 (371)
T ss_dssp TTC---C--TTCEEEEEC--------TTBC---------------CHHHHHHHHHH-SCTTCCC-EEECCBS--SHHHHH
T ss_pred Hhc---C--CCCEEEEEC--------CCCc---------------CHHHHHHHHHH-HHhhcCC-cCcCCcC--CHHHHH
Confidence 433 3 489999999 5655 56788887655 6 99999 9999998 999999
Q ss_pred HHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 348 SLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 348 ~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 233 ~l~~~~~iPI~~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 278 (371)
T 2ps2_A 233 SLRRKTDIPIIYDEL-ATNEMSIVKILADDAAEGIDLKISKAGGLTR 278 (371)
T ss_dssp HHHTTCCSCEEESTT-CCSHHHHHHHHHHTCCSEEEEEHHHHTSHHH
T ss_pred HHHhhCCCCEEeCCC-cCCHHHHHHHHHhCCCCEEEechhhcCCHHH
Confidence 999999999999997 5789999999999999999999999999974
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=316.81 Aligned_cols=258 Identities=16% Similarity=0.233 Sum_probs=199.8
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.| ++++.|+|+|+ |++ |+||+. +++ ..+...
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~GE~~----------g~~--~~~~~~ 61 (382)
T 2gdq_A 4 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGID----------GWGECV----------DWL--PALHVG 61 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEEC----------SCH--HHHHHH
T ss_pred CEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCE----------EEEeec----------Cch--HHHHHH
Confidence 899999988772 2333 36799999999 886 999973 111 245667
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+||.+++++|+.|.+.. .+|++|||+||||+.||.+|+|||+||| |..++++|+ |
T Consensus 62 i~~~l~~~l~G~d~~~~~~~~~~l~~~~---------~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~vp~--~ 127 (382)
T 2gdq_A 62 FTKRIIPFLLGKQAGSRLSLVRTIQKWH---------QRAASAVSMALTEIAAKAADCSVCELWG---GRYREEIPV--Y 127 (382)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHC---------HHHHHHHHHHHHHHHHHHTTSBHHHHTT---CCSCSEEEE--E
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHcCCcHHHHcC---CCCCCceeE--E
Confidence 8888999999999999999999997631 5899999999999999999999999999 765666665 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
+.+ |+.+ +..+++++ ..+++.++..+||+.+| .|.| . .+.+.+.+.+++||++
T Consensus 128 ~~~-g~~~-~~~~~~e~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~d~e~v~avR~a 180 (382)
T 2gdq_A 128 ASF-QSYS-DSPQWISR---------SVSNVEAQLKKGFEQIK----VKIG-------G-----TSFKEDVRHINALQHT 180 (382)
T ss_dssp EEC-CCBC-SSTTHHHH---------HHHHHHHHHTTTCCEEE----EECS-------S-----SCHHHHHHHHHHHHHH
T ss_pred EEe-cccC-CCcccHHH---------HHHHHHHHHHcCCCEEE----EcCC-------C-----CCHHHHHHHHHHHHHh
Confidence 543 2211 11111122 24566666677787777 4432 1 1233345666666666
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC-CceeeeCCCCCCCHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF-PIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~-~i~~iEdPl~~~D~~~~~~L 349 (394)
+ | +|+.|++|+ |+.| +.++++++.. .+++| ++.|||||++++|+++|++|
T Consensus 181 ~---G--~d~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~~i~~iEqP~~~~d~~~~~~l 231 (382)
T 2gdq_A 181 A---G--SSITMILDA--------NQSY---------------DAAAAFKWER-YFSEWTNIGWLEEPLPFDQPQDYAML 231 (382)
T ss_dssp H---C--TTSEEEEEC--------TTCC---------------CHHHHHTTHH-HHTTCSCEEEEECCSCSSCHHHHHHH
T ss_pred h---C--CCCEEEEEC--------CCCC---------------CHHHHHHHHH-HHhhccCCeEEECCCCcccHHHHHHH
Confidence 6 3 489999999 5655 5678888654 59999 99999999999999999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 232 ~~~~~iPIa~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 275 (382)
T 2gdq_A 232 RSRLSVPVAGGENM-KGPAQYVPLLSQRCLDIIQPDVMHVNGIDE 275 (382)
T ss_dssp HTTCSSCEEECTTC-CSHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HhhCCCCEEecCCc-CCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 99999999999975 679999999999999999999999999974
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=317.74 Aligned_cols=259 Identities=16% Similarity=0.213 Sum_probs=199.7
Q ss_pred ceEEEEEEEEE--------ecCCCC------ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRGN------PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g~------~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+ ..+.|. ++++|+|+|+ |++ |+||+... .++|.+++..++.
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~----~~~~~~~~~~~~~ 68 (378)
T 2qdd_A 3 LRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVT----------GWGEGCPW----GHSYLPAHGPGLR 68 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCE----------EEEEECCS----TTTSSSCCHHHHH
T ss_pred CEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCE----------EEEEEecC----CCCcCCCCHHHHH
Confidence 89999998876 234442 4699999999 876 99998543 1367788888888
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccccee
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p 188 (394)
..|+ .++|.|+|+||.+++++|+.|.... ++ ..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 69 ~~l~-~l~~~l~g~d~~~~~~~~~~l~~~~----~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~v~~- 137 (378)
T 2qdd_A 69 AGIA-TLAPHLLGLDPRSLDHVNRVMDLQL----PG--HSYVKSPIDMACWDILGQVAGLPLWQLLG---GEAATPVPI- 137 (378)
T ss_dssp HHHH-HHHHHHTTCCTTCHHHHHHHHHHHS----CS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CSSCCCEEB-
T ss_pred HHHH-HHHHHHCCCCccCHHHHHHHHHHhh----cc--chHHHHHHHHHHHHHHHHHcCCcHHHHhC---CCCCCCCce-
Confidence 8888 7999999999999999999995421 12 46899999999999999999999999999 765667775
Q ss_pred eEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 189 ~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
|++++.+ +.++ ..+++.++..+||+.+| .|.| .++.+.+.+.++.||
T Consensus 138 -~~~~~~~-------~~e~---------~~~~a~~~~~~Gf~~iK----ik~g------------~~~~~~~~e~v~avr 184 (378)
T 2qdd_A 138 -NSSISTG-------TPDQ---------MLGLIAEAAAQGYRTHS----AKIG------------GSDPAQDIARIEAIS 184 (378)
T ss_dssp -EEEECSC-------CHHH---------HHHHHHHHHHHTCCEEE----EECC------------SSCHHHHHHHHHHHH
T ss_pred -EEEecCC-------CHHH---------HHHHHHHHHHHhhhhee----ecCC------------CCChHHHHHHHHHHH
Confidence 5554221 1222 25566677777888877 4432 112222334444444
Q ss_pred HHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHH
Q 016156 269 DAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 269 ~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~ 348 (394)
+++ | +++.|++|+ |+.| +.+++++++.+ ++ |++ |||||++ |+++|++
T Consensus 185 ~a~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~~-l~-~~i-~iEqP~~--d~~~~~~ 231 (378)
T 2qdd_A 185 AGL---P--DGHRVTFDV--------NRAW---------------TPAIAVEVLNS-VR-ARD-WIEQPCQ--TLDQCAH 231 (378)
T ss_dssp HSC---C--TTCEEEEEC--------TTCC---------------CHHHHHHHHTS-CC-CCC-EEECCSS--SHHHHHH
T ss_pred HHh---C--CCCEEEEeC--------CCCC---------------CHHHHHHHHHH-hC-CCc-EEEcCCC--CHHHHHH
Confidence 443 3 489999999 5545 56788886554 78 999 9999998 9999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||.. .++++++++++.+++|++++|++++||+|+
T Consensus 232 l~~~~~iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~ 276 (378)
T 2qdd_A 232 VARRVANPIMLDECL-HEFSDHLAAWSRGACEGVKIKPNRVGGLTR 276 (378)
T ss_dssp HHTTCCSCEEECTTC-CSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHHhCCCCEEECCCc-CCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 999999999999984 679999999999999999999999999974
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=314.63 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=205.5
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.| ++++.|+|+|+ | + |+||+.... .++|.+++++++...
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~----------G~GE~~~~~---~~~~~~e~~~~~~~~ 66 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-E----------GWGECVTMA---GPLYSSEYNDGAEHV 66 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-E----------EEEECCCBS---SSSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-E----------EEEEecCCC---CCccccCcHHHHHHH
Confidence 788888887662 2333 46899999999 8 7 999985431 135788888889988
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.++|.|+|+|+.+++++|+.|..+. + +.+|++|||+||||+.||.+|+|||+||| |. +..+|++ |
T Consensus 67 i~~~l~~~l~g~d~~~~~~l~~~~~~~~-----g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~~~~~~~-~ 134 (368)
T 1sjd_A 67 LRHYLIPALLAAEDITAAKVTPLLAKFK-----G--HRMAKGALEMAVLDAELRAHERSFAAELG---SV-RDSVPCG-V 134 (368)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHTTSC-----S--CHHHHHHHHHHHHHHHHHHTTCBHHHHHT---CC-CSEEEBE-E
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHhc-----C--CHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCCccce-E
Confidence 9999999999999999999999885331 1 35799999999999999999999999999 65 4567765 4
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
++ |.+. +.++ ..+++.++..+||+.+| .|.| + +.+.+.++.||++
T Consensus 135 ~~---g~~~----~~~~---------~~~~a~~~~~~Gf~~vK----ik~~-------------~--~~~~e~v~avr~~ 179 (368)
T 1sjd_A 135 SV---GIMD----TIPQ---------LLDVVGGYLDEGYVRIK----LKIE-------------P--GWDVEPVRAVRER 179 (368)
T ss_dssp EE---CCCS----CHHH---------HHHHHHHHHHHTCSEEE----EECB-------------T--TBSHHHHHHHHHH
T ss_pred Ee---eCCC----CHHH---------HHHHHHHHHHhCccEEE----EecC-------------c--hhHHHHHHHHHHh
Confidence 42 3211 2222 35677777777888887 3421 2 2347788888888
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +++.|++|+ |+.|+ .++ ++++ +.+++|++.|||||++++|+++|++|+
T Consensus 180 ~---g--~~~~l~vDa--------n~~~~---------------~~~-~~~~-~~l~~~~i~~iE~P~~~~~~~~~~~l~ 229 (368)
T 1sjd_A 180 F---G--DDVLLQVDA--------NTAYT---------------LGD-APQL-ARLDPFGLLLIEQPLEEEDVLGHAELA 229 (368)
T ss_dssp H---C--TTSEEEEEC--------TTCCC---------------GGG-HHHH-HTTGGGCCSEEECCSCTTCHHHHHHHH
T ss_pred c---C--CCceEEEec--------cCCCC---------------HHH-HHHH-HHHHhcCCCeEeCCCChhhHHHHHHHH
Confidence 7 3 489999999 56564 457 7754 559999999999999999999999999
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 230 ~~~~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 272 (368)
T 1sjd_A 230 RRIQTPICLDES-IVSARAAADAIKLGAVQIVNIKPGRVGGYLE 272 (368)
T ss_dssp TTCSSCEEESTT-CCSHHHHHHHHHTTCCSEEEECTTTTTSHHH
T ss_pred HhCCCCEEECCC-cCCHHHHHHHHHcCCCCEEEecccccCCHHH
Confidence 999999999997 5789999999999999999999999999974
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=319.17 Aligned_cols=263 Identities=19% Similarity=0.238 Sum_probs=199.7
Q ss_pred ceEEEEEEEEEe---c------CCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQII---D------SRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v~---~------~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+- . +.| +..+.|+|+|+ |++ |+||+.... +.|++++...+.
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~----~~~~~e~~~~~~ 68 (386)
T 3fv9_G 3 LKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLT----------GWGESTPFG----STYIAAHAGGTR 68 (386)
T ss_dssp CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCE----------EEEEECCST----TSSSSCCHHHHH
T ss_pred CEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCE----------EEEecccCC----CccCcccHHHHH
Confidence 899999998872 1 223 24689999999 986 999985421 256777777777
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccccee
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p 188 (394)
+.|+ .++|.|+|+||.+++++|+.|.+.- . + ..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 69 ~~l~-~l~~~l~G~d~~~~~~~~~~l~~~~--~--g--~~~A~said~ALwDl~gk~~g~Pv~~LLG---g~~~~~v~~- 137 (386)
T 3fv9_G 69 AALE-LLAPAILGMDPRQHDRIWDRMRDTL--K--G--HRDARAALDIACWDIAAQAAGLPLCDMTG---GRVAGPVPV- 137 (386)
T ss_dssp HHHH-HHHHHHTTSCTTCHHHHHHHHHHHC--S--S--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCCSSCBCE-
T ss_pred HHHH-HHHHHhCCCCcCCHHHHHHHHHHHh--c--C--cHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CCCCCceee-
Confidence 7775 5999999999999999999998631 1 1 14799999999999999999999999999 766778876
Q ss_pred eEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 189 ~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
|.+++.+ +. +...+++.+...+||+++| .|.|.. .. ..+.++.++.++
T Consensus 138 -y~s~~~~-------~~---------e~~~~~a~~~~~~G~~~~K----~Kvg~~-------~~----~~~~~~d~~~v~ 185 (386)
T 3fv9_G 138 -ISSIGGD-------TP---------EAMRAKVARHRAQGFKGHS----IKIGAS-------EA----EGGPALDAERIT 185 (386)
T ss_dssp -EEEECSC-------CH---------HHHHHHHHHHHHTTCCEEE----EECCCC-------TT----TTHHHHHHHHHH
T ss_pred -eEecCCC-------CH---------HHHHHHHHHHHHCCCCEEE----EeccCC-------CC----CCCHHHHHHHHH
Confidence 4443221 11 1235566666677888888 564411 00 011244455543
Q ss_pred HHHHH-cCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhh-hcCCceeeeCCCCCCCHHHH
Q 016156 269 DAIEK-AGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFV-RDFPIVSIEDPFDQDDWSSW 346 (394)
Q Consensus 269 ~Av~~-ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l-~~~~i~~iEdPl~~~D~~~~ 346 (394)
. +|+ +| +++.|++|+ |+.| +.++++++.. .+ +++++ |||||++ |++++
T Consensus 186 a-vR~a~G--~~~~L~vDa--------N~~~---------------~~~~A~~~~~-~l~~~~~i-~iEeP~~--~~~~~ 235 (386)
T 3fv9_G 186 A-CLADRQ--PGEWYLADA--------NNGL---------------TVEHALRMLS-LLPPGLDI-VLEAPCA--SWAET 235 (386)
T ss_dssp H-HTTTCC--TTCEEEEEC--------TTCC---------------CHHHHHHHHH-HSCSSCCC-EEECCCS--SHHHH
T ss_pred H-HHHHcC--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HhhccCCc-EEecCCC--CHHHH
Confidence 2 333 23 489999999 5655 4678887544 57 88999 9999999 89999
Q ss_pred HHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 347 ~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++++++||++||. +.++++++++++.+++|++|+|++++||||+
T Consensus 236 ~~l~~~~~iPIa~dE~-~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~ 282 (386)
T 3fv9_G 236 KSLRARCALPLLLDEL-IQTETDLIAAIRDDLCDGVGLKVSKQGGITP 282 (386)
T ss_dssp HHHHTTCCSCEEESTT-CCSHHHHHHHHHTTCCSEEEEEHHHHTSHHH
T ss_pred HHHHhhCCCCEEeCCC-cCCHHHHHHHHHhCCCCEEEECccccCCHHH
Confidence 9999999999999997 5679999999999999999999999999974
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.26 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=195.7
Q ss_pred ceEEEEEEEEEe--------cCCC------CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG------NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g------~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+- .+.| ...+.|+|+|+ |++ |+||+.... +.|.+++...+.
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~----~~~~~~~~~~~~ 68 (378)
T 3eez_A 3 LKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGIT----------GWGEGTPWG----HTYVPAHGPGIR 68 (378)
T ss_dssp CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCC----------EEEEECCSC----SSSSSCCHHHHH
T ss_pred cEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCE----------EEecccCCC----CccCCCcHHHHH
Confidence 899999998882 1323 24699999999 886 999985421 256666677777
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccccee
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p 188 (394)
+.|+ .++|.|+|+||.+++++|+.|.+.- . + ..+|++|||+||||+.||.+|+|||+||| |..++++|++
T Consensus 69 ~~l~-~l~p~l~G~d~~~~~~~~~~l~~~~--~--g--~~~A~said~ALwDl~gk~~g~Pl~~LlG---g~~r~~v~~~ 138 (378)
T 3eez_A 69 AGIE-TMAPFVLGLDPRRLLDVERAMDIAL--P--G--HLYAKSPIDMACWDIAGQAAGLPIADLMG---GGSRTPRPIA 138 (378)
T ss_dssp HHHH-HHHHHHTTSCTTCHHHHHHHHHHHS--S--S--CHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CCCCSCEEBB
T ss_pred HHHH-HHHHHhcCCCcCCHHHHHHHHHHHh--c--C--cHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCCCeEEEE
Confidence 7775 5999999999999999999998631 1 1 14799999999999999999999999999 7767788764
Q ss_pred eEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 189 ~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
.+++++ +. +...+++.+...+||+.+| .|.| + + .++.++.++
T Consensus 139 --~~~~~~-------~~---------e~~~~~a~~~~~~G~~~iK----iK~G----------~---~---~~~d~~~v~ 180 (378)
T 3eez_A 139 --SSVGAK-------SV---------EETRAVIDRYRQRGYVAHS----VKIG----------G---D---VERDIARIR 180 (378)
T ss_dssp --CCBCSC-------CH---------HHHHHHHHHHHHTTCCEEE----EECC----------S---C---HHHHHHHHH
T ss_pred --EEecCC-------CH---------HHHHHHHHHHHhCCCCEEE----eccC----------C---C---HHHHHHHHH
Confidence 332211 11 1234555556666788777 4533 1 2 234444443
Q ss_pred HHHHHc-CCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHH
Q 016156 269 DAIEKA-GYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWA 347 (394)
Q Consensus 269 ~Av~~a-g~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~ 347 (394)
++|++ | +|+.|++|+ |+.| +.++++++ .+.++++++ |||||++ |+++++
T Consensus 181 -avR~a~g--~~~~l~vDa--------n~~~---------------~~~~a~~~-~~~l~~~~i-~iEqP~~--~~~~~~ 230 (378)
T 3eez_A 181 -DVEDIRE--PGEIVLYDV--------NRGW---------------TRQQALRV-MRATEDLHV-MFEQPGE--TLDDIA 230 (378)
T ss_dssp -HHTTSCC--TTCEEEEEC--------TTCC---------------CHHHHHHH-HHHTGGGTC-CEECCSS--SHHHHH
T ss_pred -HHHHHcC--CCceEEEEC--------CCCC---------------CHHHHHHH-HHHhccCCe-EEecCCC--CHHHHH
Confidence 33332 3 489999999 5655 46788875 455899999 9999998 999999
Q ss_pred HHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 348 SLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 348 ~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++++++||++||. +.++++++++++.+++|++++|++++||||+
T Consensus 231 ~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~ 276 (378)
T 3eez_A 231 AIRPLHSAPVSVDEC-LVTLQDAARVARDGLAEVFGIKLNRVGGLTR 276 (378)
T ss_dssp HTGGGCCCCEEECTT-CCSHHHHHHHHHTTCCSEEEEEHHHHTSHHH
T ss_pred HHHhhCCCCEEECCC-CCCHHHHHHHHHcCCCCEEEeCchhcCCHHH
Confidence 999999999999997 5679999999999999999999999999974
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=312.32 Aligned_cols=243 Identities=14% Similarity=0.139 Sum_probs=189.4
Q ss_pred eEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC
Q 016156 62 TVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGT 140 (394)
Q Consensus 62 tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~ 140 (394)
+++|+|+|+ |++ |+||+... .++. .+.+.|++.++|.|+|+||.+++++|+.|++. ++
T Consensus 52 ~~~V~v~td~G~~----------G~GE~~~~--------~~~~--~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~-~~ 110 (388)
T 2nql_A 52 SVLVRMTTEAGTV----------GWGETYGI--------VAPG--AVAALINDLLAGFVIGRDASDPSAVYDDLYDM-MR 110 (388)
T ss_dssp EEEEEEEETTCCE----------EEEEEECS--------SCHH--HHHHHHHHTHHHHHTTCCSSSHHHHHHHHHHH-HG
T ss_pred EEEEEEEECCCCE----------EEEEecCC--------CCcH--HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhh-cc
Confidence 689999999 886 99998532 2222 55666887899999999999999999999541 11
Q ss_pred CCC--CccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 141 PNK--SKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 141 ~~~--~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
.+. +++..+|++|||+||||+.||.+|+|||+||| |. ++++|+ |+++ |.+. +.++ ..
T Consensus 111 ~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG---g~-~~~vp~--~~~~--g~~~----~~e~---------~~ 169 (388)
T 2nql_A 111 VRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLG---GG-VDSFPA--YVSG--LPER----TLKA---------RG 169 (388)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CC-CSEEEE--EEEC--CCCS----SHHH---------HH
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCceEe--eEEe--CCCC----CHHH---------HH
Confidence 111 24567899999999999999999999999999 65 567776 5543 2111 2233 25
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.++..+||+.+| .|.| . .+.+. .+.++.||+++ | +|+.|++|+ |+.|
T Consensus 170 ~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~-~e~v~avr~a~---g--~d~~l~vDa--------n~~~ 219 (388)
T 2nql_A 170 ELAKYWQDRGFNAFK----FATP-------V-----ADDGP-AAEIANLRQVL---G--PQAKIAADM--------HWNQ 219 (388)
T ss_dssp HHHHHHHHTTCCEEE----EEGG-------G-----CTTCH-HHHHHHHHHHH---C--TTSEEEEEC--------CSCS
T ss_pred HHHHHHHHhCCCEEE----EeCC-------C-----CChHH-HHHHHHHHHHh---C--CCCEEEEEC--------CCCC
Confidence 566666677788777 4433 1 23444 56777777776 3 489999999 5655
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCC
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
+.+++++++. .+++|++.|||||++++|+++|++|++++++||++||. +.++++++++++.++
T Consensus 220 ---------------~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPI~~dE~-~~~~~~~~~~i~~~~ 282 (388)
T 2nql_A 220 ---------------TPERALELIA-EMQPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEE-WRTHWDMRARIERCR 282 (388)
T ss_dssp ---------------CHHHHHHHHH-HHGGGCCSCEECCSCTTCHHHHHHHHTSCCSCEEECTT-CCSHHHHHHHHTTSC
T ss_pred ---------------CHHHHHHHHH-HHhhcCCCEEECCCChhhHHHHHHHHhhCCCCEEEeCC-cCCHHHHHHHHHcCC
Confidence 5678888655 59999999999999999999999999999999999997 468999999999999
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++++|+++ ||+|+
T Consensus 283 ~d~v~ik~~~-GGit~ 297 (388)
T 2nql_A 283 IAIVQPEMGH-KGITN 297 (388)
T ss_dssp CSEECCCHHH-HCHHH
T ss_pred CCEEEecCCC-CCHHH
Confidence 9999999999 99974
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=320.60 Aligned_cols=284 Identities=12% Similarity=0.149 Sum_probs=197.9
Q ss_pred CCcchhhhhHhhhcCCcceEEEEEEEEEe-------cCCC--C---ceEEEEEEECCeeeeeccCCCCCceeeeeeeecC
Q 016156 27 YRPMRVQCSVASTASSSAKVKSVKARQII-------DSRG--N---PTVEVDLITDDLFRSAVPSGASTGIYEALELRDG 94 (394)
Q Consensus 27 ~~p~d~~g~la~~f~~~~~I~~V~~r~v~-------~~~g--~---~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~ 94 (394)
..|++||=.-- +..|||++|+++.+- ++.| . ..+.|+|+||+ .+|+||+.
T Consensus 13 ~~~~~~~~~~m---~~~mkIt~i~~~~v~~p~~p~~~~~g~~~~~~~~~~V~v~td~----------~~G~GE~~----- 74 (445)
T 3va8_A 13 LGTENLYFQSM---SQRSIIKEIVITPVAFHDMPLLNSVGVHEPFALRSIIEIITED----------SYGLGESY----- 74 (445)
T ss_dssp ----CHHHHHH---HHHTBCCEEEEEEEEEECCCBEETTEECCSEEEEEEEEEECSS----------CEEEEEEE-----
T ss_pred cChhhhccccC---CCCCEEEEEEEEEEecCCcccccccCcccCceeEEEEEEEECC----------CEEEEecC-----
Confidence 34666543321 122999999999883 2222 2 24799999993 46999973
Q ss_pred CCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHh-cCCC---CCC--c------cchhhHHHHHHHHHHHh
Q 016156 95 DKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEI-DGTP---NKS--K------IGANAILGVSLSVCRAG 162 (394)
Q Consensus 95 ~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~-~~~~---~~~--~------ig~~A~sAvdiAlwda~ 162 (394)
+++ .+...|+ .|+|.|+|+||.+++++|+.|++. .... ..| + +...|++|||+||||++
T Consensus 75 -----g~~---~~~~~i~-~l~p~LiG~d~~~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~ 145 (445)
T 3va8_A 75 -----GDS---AHLDRLQ-KAADKIKGLSVYSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQ 145 (445)
T ss_dssp -----CCH---HHHHHHH-HHHHHHTTSBTTCHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred -----CcH---HHHHHHH-HHHHHHCCCChhHHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHH
Confidence 232 3334454 599999999999999999999884 2111 011 1 55679999999999999
Q ss_pred HhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC--CCcccceeeccCCCCCHHHHHHHHHH-HHHHHHHHHHhh
Q 016156 163 AGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN--NLAMQEFMILPVGATSFAEALRMGSE-VYHILKGIIKEK 239 (394)
Q Consensus 163 ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~--~l~~~e~~i~p~~~~~~~ea~~~~~~-~~~~lK~~i~~k 239 (394)
||.+|+|||+||| |..++++|++.|..... ...++ ....- .+.+++...+++.++..+ ||+++| .|
T Consensus 146 gK~~g~Pv~~LLG---G~~r~~v~~~a~~~y~~-~~~~g~~~~~~~---~~~~~e~~~~~a~~~~~~~Gf~~~K----lK 214 (445)
T 3va8_A 146 GKLAGISVSDLLG---GRVRDSVQYSAYLFYKW-GGHPGDEDDEYG---PALDPEGVVKQAKKIIDEYGFKAIK----LK 214 (445)
T ss_dssp HHHHTCBHHHHTT---CCSSSEEEBCEEEECBC-SSSTTSCCCTTC---CBCSHHHHHHHHHHHHHHHCCSCEE----EE
T ss_pred HHHcCCcHHHHhC---CCCCCeEEEeeeecccc-cccccccccccc---cCCCHHHHHHHHHHHHHhcCCCEEE----Ec
Confidence 9999999999999 77788998855432110 00000 00000 001112345666666654 888887 55
Q ss_pred cCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHH
Q 016156 240 YGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLG 319 (394)
Q Consensus 240 ~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i 319 (394)
.| ..+.+.+.+++++||+++ +++.|++|+ |+.| +.++++
T Consensus 215 vG------------~~~~~~Di~~v~avRea~------~~~~L~vDa--------N~~w---------------~~~~Ai 253 (445)
T 3va8_A 215 GG------------VFPPADEVAAIKALHKAF------PGVPLRLDP--------NAAW---------------TVETSK 253 (445)
T ss_dssp CS------------SSCHHHHHHHHHHHHHHS------TTCCEEEEC--------TTCB---------------CHHHHH
T ss_pred cC------------CCCHHHHHHHHHHHHHhC------CCCcEeeeC--------CCCC---------------CHHHHH
Confidence 33 112222344555555544 689999999 5655 567888
Q ss_pred HHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 320 DLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 320 ~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++ .+.+++| +.|||||++ |++++++|++++++||++||. +++.++++++++.+++|++|+|++++||||+
T Consensus 254 ~~-~~~L~~~-l~~iEeP~~--d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~div~~d~~~~GGite 323 (445)
T 3va8_A 254 WV-AKELEGI-VEYLEDPAG--EIEGMAAVAKEASMPLATNMA-VVAFDHLPPSILQDAVQVILSDHHFWGGLRK 323 (445)
T ss_dssp HH-HHHTTTT-CSEEESCBS--HHHHHHHHHTTCSSCEEESSS-CCSGGGHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred HH-HHHHhhh-cCeEeecCc--CHHHHHHHHHcCCCCEEeCCc-cCCHHHHHHHHHcCCCCEEEecchhcCCHHH
Confidence 85 4558999 999999984 899999999999999999997 5789999999999999999999999999985
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=313.63 Aligned_cols=259 Identities=19% Similarity=0.249 Sum_probs=202.3
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|+|++|+.+.+- .+.| ++++.|+|+|||++ |+||+.... .++|.++++.++...|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~tdG~~----------G~GE~~~~~---~~~~~~e~~~~~~~~i 67 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFGEGLE----------GLGEGVMER---LPLYREETVAGARYLL 67 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEE----------EEEECCCBS---SCSSSSCBHHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEECCeE----------EEEEeccCC---CCcccCCCHHHHHHHH
Confidence 788888887662 2333 46799999998765 999975432 1467888888888889
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
++.++|.|+|+|+.+++++|+.|..+. + +.+|++|||+||||+.||.+|+|||+||| |. +..+|++ |+
T Consensus 68 ~~~l~~~l~G~d~~~~~~l~~~~~~~~-----g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~~~~~~~-~~ 135 (369)
T 2zc8_A 68 EEVFLPRVLGRDLPNPEALREALAPFR-----G--NPMAKAVLEMAFFDLWAKALGRPLWQVLG---GV-RQAVEVG-VS 135 (369)
T ss_dssp HHTHHHHHTTCBCSSHHHHHHHHTTSC-----S--CHHHHHHHHHHHHHHHHHHTTSBHHHHHT---CC-CSEEEBC-EE
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHhc-----C--ChHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCceece-EE
Confidence 999999999999999999999885331 1 34799999999999999999999999999 65 3456765 44
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHH
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAI 271 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av 271 (394)
+ |.+. +.++ ..+++.++..+||+.+| .| ++ + +.+.+.+++||+++
T Consensus 136 ~---g~~~----~~~~---------~~~~a~~~~~~G~~~iK----ik-------~~------~--~~d~~~v~avr~a~ 180 (369)
T 2zc8_A 136 L---GIQP----SVED---------TLRVVERHLEEGYRRIK----LK-------IK------P--GWDYEVLKAVREAF 180 (369)
T ss_dssp E---CCCS----SHHH---------HHHHHHHHHHTTCSCEE----EE-------CB------T--TBSHHHHHHHHHHC
T ss_pred e---cCCC----CHHH---------HHHHHHHHHHhhhheee----ee-------cC------h--hHHHHHHHHHHHHc
Confidence 2 2210 2222 25666777777788777 34 21 2 22356676666664
Q ss_pred HHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHh
Q 016156 272 EKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQS 351 (394)
Q Consensus 272 ~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~ 351 (394)
+++.|++|+ |+.|+ .++ +++ .+.+++|++.|||||++++|+++|++|++
T Consensus 181 ------~~~~l~vDa--------n~~~~---------------~~~-~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~~ 229 (369)
T 2zc8_A 181 ------PEATLTADA--------NSAYS---------------LAN-LAQ-LKRLDELRLDYIEQPLAYDDLLDHAKLQR 229 (369)
T ss_dssp ------TTSCEEEEC--------TTCCC---------------GGG-HHH-HHGGGGGCCSCEECCSCTTCSHHHHHHHH
T ss_pred ------CCCeEEEec--------CCCCC---------------HHH-HHH-HHHHHhCCCcEEECCCCcccHHHHHHHHh
Confidence 578999999 56664 456 775 45599999999999999999999999999
Q ss_pred hcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 352 SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 352 ~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 230 ~~~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 271 (369)
T 2zc8_A 230 ELSTPICLDES-LTGAEKARKAIELGAGRVFNVKPARLGGHGE 271 (369)
T ss_dssp HCSSCEEESTT-CCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred hCCCCEEEcCc-cCCHHHHHHHHHhCCCCEEEEchhhhCCHHH
Confidence 99999999997 5789999999999999999999999999974
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=322.83 Aligned_cols=275 Identities=18% Similarity=0.166 Sum_probs=193.1
Q ss_pred ceEEEEEEEEEecC--C-----C--C---ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQIIDS--R-----G--N---PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~~~--~-----g--~---~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.|--+ . | . ..+.|+|+|| |++ |+||+. +++. +...
T Consensus 8 ~~It~i~~~~v~~~d~~~~~~~g~h~p~~~~~~V~i~td~Gi~----------G~GE~~----------~~~~---v~~~ 64 (470)
T 3p0w_A 8 PRVTEMQVIPVAGRDSMLLNLCGAHAPFFTRNLVILKDNAGRT----------GVGEVP----------GGEG---IRQA 64 (470)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEE----------CCHH---HHHH
T ss_pred CeEEEEEEEEecCCCcccccccccCCCcceEEEEEEEECCCCE----------EEEeCC----------ChHH---HHHH
Confidence 89999999999322 1 1 2 2689999999 986 999963 2333 3445
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhc-CCCCCC-------------cc-----------chhhHHHHHHHHHHHhHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEID-GTPNKS-------------KI-----------GANAILGVSLSVCRAGAGA 165 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~-~~~~~~-------------~i-----------g~~A~sAvdiAlwda~ak~ 165 (394)
|++ ++|.|+|+||.+++++|+.|++.. ...++| .+ ..+|++|||+||||++||.
T Consensus 65 i~~-l~p~LiG~d~~~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~ 143 (470)
T 3p0w_A 65 LER-VIPLVVGQSIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQF 143 (470)
T ss_dssp HHH-TGGGTTTCBGGGHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCCChhhHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 655 899999999999999999998832 111111 11 1389999999999999999
Q ss_pred cCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccce------e------eccCCCCCHHHHHHHHH-HHHHHH
Q 016156 166 KGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEF------M------ILPVGATSFAEALRMGS-EVYHIL 232 (394)
Q Consensus 166 ~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~------~------i~p~~~~~~~ea~~~~~-~~~~~l 232 (394)
+|+|||+|||+ |+.++++|++.+....|.. ....+.+... . -..+++...+++.++.. +||+++
T Consensus 144 ~g~Pv~~LLGg--G~~r~~v~~y~~~~~~gd~-~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~ 220 (470)
T 3p0w_A 144 LEVPVAELLGA--GQQRDSAPMLAYLFYVGDR-RKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADF 220 (470)
T ss_dssp HTSBGGGTSTT--SCCCSEEEBCEEECCBCCG-GGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCcHHHHhCC--CCCCCeEEEeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEE
Confidence 99999999993 3567888876543211100 0000000000 0 00011223556666665 488888
Q ss_pred HHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcc
Q 016156 233 KGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHV 312 (394)
Q Consensus 233 K~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~ 312 (394)
| .|.| ..+. ++.++.| +++|+++ +++.|++|+ |+.|
T Consensus 221 K----lKvG------------~~~~---~~Di~rv-~avRea~--pd~~L~vDa--------N~~w-------------- 256 (470)
T 3p0w_A 221 K----LKGG------------VMPG---AEEMEAI-AAIKARF--PHARVTLDP--------NGAW-------------- 256 (470)
T ss_dssp E----EECS------------SSCH---HHHHHHH-HHHHHHC--TTSEEEEEC--------TTBB--------------
T ss_pred E----EeCC------------CCCH---HHHHHHH-HHHHHhC--CCCeEEeeC--------CCCC--------------
Confidence 7 5533 1122 3344443 3344443 689999999 5655
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeCCCCCCC----HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeecccc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNH 388 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D----~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~ 388 (394)
+.++++++ .+.+++| +.|||||++++| ++++++|++++++||++||. +++.++++++++.+++|++|+|+ +
T Consensus 257 -~~~~Ai~~-~~~Le~~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~l~~~a~div~~d~-~ 331 (470)
T 3p0w_A 257 -SLNEAIAL-CKGQGHL-VAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMI-ATDWRQMGHAVQLHAVDIPLADP-H 331 (470)
T ss_dssp -CHHHHHHH-HTTCTTT-CSEEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSS-SCSHHHHHHHHHTTCCSEEBCCH-H
T ss_pred -CHHHHHHH-HHhcccc-ceeecCCCChhhccchHHHHHHHHhcCCCCEEeCCc-cCCHHHHHHHHHcCCCCEEEecC-c
Confidence 56788875 5568999 999999999999 79999999999999999996 67899999999999999999999 7
Q ss_pred ccccCC
Q 016156 389 LFEIKS 394 (394)
Q Consensus 389 ~Ggit~ 394 (394)
+||||+
T Consensus 332 ~GGit~ 337 (470)
T 3p0w_A 332 FWTMQG 337 (470)
T ss_dssp HHCHHH
T ss_pred cCCHHH
Confidence 999974
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=313.64 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=197.2
Q ss_pred ceEEEEEEEEE-e-----cCCC----CceEEEEEEEC----CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 44 AKVKSVKARQI-I-----DSRG----NPTVEVDLITD----DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v-~-----~~~g----~~tv~V~V~td----G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
|+|++|+...+ + ++.+ ++++.|+|+|+ |++ |+||+.. .+.+++ +..
T Consensus 6 mkI~~i~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~----------G~GE~~~-------~~~~~~---~~~ 65 (392)
T 1tzz_A 6 VRIVDVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKR----------VVGYGFN-------SNGRYG---QGG 65 (392)
T ss_dssp CCEEEEEEEEEECCC---------CCCEEEEEEEEEEEECSSSE----------EEEEEEC-------CTTSCC---CHH
T ss_pred cEEeEEEEEEecCCCcccccccccCcceEEEEEEEECCCCCCCE----------EEEEecC-------CCchHH---HHH
Confidence 88999984444 1 1222 35799999886 664 9999853 122323 344
Q ss_pred HhHHhHhhhhcCCCC----------CCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhccc-
Q 016156 110 NINDILGPKLVGVDI----------RDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELS- 178 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp----------~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~- 178 (394)
.|++.++|.|+|+|| .+++++|+.|.+.....+++ +..+|++|||+||||+.||.+|+|||+|||..+
T Consensus 66 ~i~~~l~~~l~G~d~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~ 144 (392)
T 1tzz_A 66 LIRERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHG-ERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHG 144 (392)
T ss_dssp HHHHTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCS-HHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhhhcccccccCHHHHHHHHHHhccccCcc-HHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccC
Confidence 567789999999999 99999999998644333333 667899999999999999999999999998222
Q ss_pred CCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCC
Q 016156 179 GTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQ 258 (394)
Q Consensus 179 g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~ 258 (394)
|..++++| +|++ +|+.|.. .+.++ ..+++.++..+||+.+| .|.| . .+++
T Consensus 145 g~~~~~v~--~y~~-~~~~~~~--~~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~-----~~~~ 194 (392)
T 1tzz_A 145 VKANPRVF--VYAA-GGYYYPG--KGLSM---------LRGEMRGYLDRGYNVVK----MKIG-------G-----APIE 194 (392)
T ss_dssp SCCCCEEE--EEEE-CCCC------CHHH---------HHHHHHHHHTTTCSEEE----EECS-------S-----SCHH
T ss_pred CCcCCCee--EEEe-CCcccCC--CCHHH---------HHHHHHHHHHcCCCEEE----EcCC-------C-----CCHH
Confidence 22344555 4664 3332211 11222 34566666666777776 4422 1 2233
Q ss_pred ChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCC
Q 016156 259 DNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF 338 (394)
Q Consensus 259 ~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl 338 (394)
.+.+.++.||+++ | +++.|++|+ |+.| +.+++++++. .+++|++.|||||+
T Consensus 195 ~~~e~v~avr~a~---g--~~~~l~vDa--------n~~~---------------~~~~a~~~~~-~l~~~~i~~iEqP~ 245 (392)
T 1tzz_A 195 EDRMRIEAVLEEI---G--KDAQLAVDA--------NGRF---------------NLETGIAYAK-MLRDYPLFWYEEVG 245 (392)
T ss_dssp HHHHHHHHHHHHH---T--TTCEEEEEC--------TTCC---------------CHHHHHHHHH-HHTTSCCSEEECCS
T ss_pred HHHHHHHHHHHhc---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHH-HHHHcCCCeecCCC
Confidence 3456666666665 3 489999999 5655 5678888655 48999999999999
Q ss_pred CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC----CCcEEeeccccccccCC
Q 016156 339 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK----SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 339 ~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~----a~d~i~ik~~~~Ggit~ 394 (394)
+++|+++|++|++++++||++||. ++++++++++++.+ ++|++++|++++||||+
T Consensus 246 ~~~d~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~ 304 (392)
T 1tzz_A 246 DPLDYALQAALAEFYPGPMATGEN-LFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCE 304 (392)
T ss_dssp CTTCHHHHHHHTTTCCSCEEECTT-CCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHH
T ss_pred ChhhHHHHHHHHhhCCCCEEECCC-CCCHHHHHHHHHcCCCccCCcEEEECccccCCHHH
Confidence 999999999999999999999997 57899999999999 99999999999999974
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=318.64 Aligned_cols=277 Identities=13% Similarity=0.166 Sum_probs=194.4
Q ss_pred cceEEEEEEEEEe--cCC-----C--C---ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 43 SAKVKSVKARQII--DSR-----G--N---PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 43 ~~~I~~V~~r~v~--~~~-----g--~---~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
.|+|++|+++.|- |+. | . ..+.|+|+|| |++ |+||+. .++ .+..
T Consensus 4 ~~~It~v~~~~v~~~d~~~~~~~g~~~~~~~~~iV~v~td~Gi~----------G~GE~~----------~~~---~v~~ 60 (450)
T 3mzn_A 4 FPKITKMNVVPVAGEDGFLLNLSGGHEPWFIRCVLVLEDESGNR----------GVGEIP----------SSE---GILN 60 (450)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEE----------CCH---HHHH
T ss_pred CCEEEEEEEEEecccCccccccccCCCCcceEEEEEEEECCCCE----------EEEeCC----------CcH---HHHH
Confidence 4899999999993 211 1 1 2479999999 986 999973 222 2344
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHh-cC--CCCCC------ccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEI-DG--TPNKS------KIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT 180 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~-~~--~~~~~------~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~ 180 (394)
.|++ ++|.|+|+||.+++++|+.|++. .. ..+.| ++..+|++|||+||||++||.+|+|||+|||+- |+
T Consensus 61 ~i~~-l~p~LiG~dp~~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~-G~ 138 (450)
T 3mzn_A 61 GLEK-CRSLVEGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQY-GR 138 (450)
T ss_dssp HHHH-THHHHTTCBGGGHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTT-CC
T ss_pred HHHH-HHHHhCCCChhhHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCC-CC
Confidence 4654 89999999999999999999873 21 11112 145789999999999999999999999999920 14
Q ss_pred cccccceeeEEeecCCcCCCCCCcccce------e------eccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCccc
Q 016156 181 KELVMPVPAFNVINGGSHAGNNLAMQEF------M------ILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNV 247 (394)
Q Consensus 181 ~~~~iP~p~~~~i~gG~~~~~~l~~~e~------~------i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~v 247 (394)
.++++|++.+....|.. ....+.+... . -..+++...+++.++.. +||+++| .|.|
T Consensus 139 ~r~~v~~y~~~~~~gd~-~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG------ 207 (450)
T 3mzn_A 139 QRDEVEALGYLFLLGDP-DKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFK----LKGG------ 207 (450)
T ss_dssp CCSEEEBCEEEECBCCG-GGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEE----EECS------
T ss_pred cCceEEeeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEE----ECCC------
Confidence 57888886543221110 0000000000 0 00011223455555555 4788877 5533
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhh
Q 016156 248 GDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR 327 (394)
Q Consensus 248 g~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~ 327 (394)
..+. ++.++.| +++|+++ +++.|++|+ |+.| |.++++++ .+.++
T Consensus 208 ------~~~~---~~Di~~v-~avRea~--pd~~L~vDa--------N~~w---------------~~~~A~~~-~~~L~ 251 (450)
T 3mzn_A 208 ------VLRG---EEEADCI-RALHEAF--PEARLALDP--------NGAW---------------KLDEAVRV-LEPIK 251 (450)
T ss_dssp ------SSCH---HHHHHHH-HHHHHHC--TTSEEEEEC--------TTCB---------------CHHHHHHH-HGGGG
T ss_pred ------CCCH---HHHHHHH-HHHHHhC--CCCeEEEEC--------CCCC---------------CHHHHHHH-HHHhh
Confidence 1122 3344444 3344443 689999999 5655 56788875 55689
Q ss_pred cCCceeeeCCCCCCC----HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 328 DFPIVSIEDPFDQDD----WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 328 ~~~i~~iEdPl~~~D----~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+| +.|||||++++| ++++++|++++++||++||. +++.++++++++.+++|++|+|+ ++||||+
T Consensus 252 ~~-i~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~di~~~d~-~~GGit~ 319 (450)
T 3mzn_A 252 HL-LSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMI-ATDYKQLQYAVQLNSVDIPLADC-HFWTMQG 319 (450)
T ss_dssp GG-CSEEESSBCCBTTBCHHHHHHHHHHHHCCCEEESSS-SSSHHHHHHHHHHTCCSEEBCCH-HHHCHHH
T ss_pred hc-cceeeCCCCcccccchHHHHHHHHHhcCCCEEeCCc-cCCHHHHHHHHHcCCCCEEEecC-ccCCHHH
Confidence 99 999999999999 79999999999999999996 67899999999999999999999 7999974
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=309.67 Aligned_cols=260 Identities=17% Similarity=0.189 Sum_probs=194.4
Q ss_pred ceEEEEEEEEEe----c-----CCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 44 AKVKSVKARQII----D-----SRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v~----~-----~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
|||++|+++.+- . +.| +.++.|+|+|| |++ ||||+.... +.|.......+..
T Consensus 10 MKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~----------G~GE~~~~~----~~~~~~~~~~~~~ 75 (376)
T 4h2h_A 10 LKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTI----------GWGETCPVG----PTYAEAHAGGALA 75 (376)
T ss_dssp CBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCE----------EEEEECCSS----SSSSSCCHHHHHH
T ss_pred eEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCE----------EEEeecCCC----CCcchhhHHHHHH
Confidence 999999998872 2 223 35799999999 986 999974321 3455545555554
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceee
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPA 189 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~ 189 (394)
+.+.++|.|+|+||.+++..+.....+.+ ...|++|||+||||+.||.+|+|||+||| |+.++++|++
T Consensus 76 -~~~~l~~~l~g~d~~~~~~~~~~~~~~~~-------~~~A~said~ALwDl~gK~~g~Pl~~LLG---G~~r~~v~~y- 143 (376)
T 4h2h_A 76 -ALEVLASGLAGAEALPLPLHTRMDSLLCG-------HNYAKSALDIAVHDLWGKRLGVPVHELLG---GALTDSVSSY- 143 (376)
T ss_dssp -HHHHHHHTTTTCBSSHHHHHHHHHHHCSC-------CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CCSCSEEECE-
T ss_pred -HHHHHHHHhcCCccCcHHHHHHHHHhhcc-------cHHHHHHHHHhhhHHHHHhcCCCceecCC---CCcCCceeEe-
Confidence 44679999999999998755543332211 13699999999999999999999999999 7778888874
Q ss_pred EEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHH
Q 016156 190 FNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTD 269 (394)
Q Consensus 190 ~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~ 269 (394)
.+++.. +. +...+++.+...+||+++| .|.| ..+.+.+.++++.+|+
T Consensus 144 -~s~~~~-------~~---------~~~~~~a~~~~~~G~~~~K----iKvg------------~~~~~~di~~v~~vr~ 190 (376)
T 4h2h_A 144 -YSLGVM-------EP---------DEAARQALEKQREGYSRLQ----VKLG------------ARPIEIDIEAIRKVWE 190 (376)
T ss_dssp -EEECSC-------CH---------HHHHHHHHHHHHHTCSEEE----EECC------------SSCHHHHHHHHHHHHH
T ss_pred -eecccC-------CH---------HHHHHHHHHHHhcCceEEE----EecC------------CCCHHHHHHHHHHHHh
Confidence 443211 11 2246677788888898888 5533 1122223445555555
Q ss_pred HHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHH
Q 016156 270 AIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 270 Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L 349 (394)
++. | .++.|++|+ |+.| |.++++++. +.++++++ |||||++ +++++++|
T Consensus 191 a~~--g--~~~~l~vDa--------N~~~---------------~~~~A~~~~-~~l~~~~~-~iEeP~~--~~~~~~~l 239 (376)
T 4h2h_A 191 AVR--G--TGIALAADG--------NRGW---------------TTRDALRFS-RECPDIPF-VMEQPCN--SFEDLEAI 239 (376)
T ss_dssp HHT--T--SCCEEEEEC--------TTCC---------------CHHHHHHHH-HHCTTSCE-EEESCSS--SHHHHHHH
T ss_pred hcc--C--CeeEEEEee--------ccCC---------------CHHHHHHHH-HHHhhccc-cccCCcc--hhhhHhhh
Confidence 542 3 489999999 5655 567888764 45888987 9999995 68899999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++.+++||++||. +.+.++++++++.+++|++|+|++++||||+
T Consensus 240 ~~~~~~pia~dE~-~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~ 283 (376)
T 4h2h_A 240 RPLCHHALYMDED-GTSLNTVITAAATSLVDGFGMKVSRIGGLQH 283 (376)
T ss_dssp GGGCCSCEEESTT-CCSHHHHHHHHHTTCCSEECCBHHHHTSHHH
T ss_pred hhcccCccccCcc-cCCHHHHHHHHHhhccCccccccceeCCcHH
Confidence 9999999999997 5689999999999999999999999999974
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=312.18 Aligned_cols=258 Identities=17% Similarity=0.188 Sum_probs=196.4
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccch-hHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGK-GVLNAVK 109 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~-~~~~a~~ 109 (394)
|+|++|+.+.+ ..+.| +++++|+|+|+ |++ |+||+. +++ +. +..
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~----------G~Ge~~----------~~~~~~--~~~ 61 (384)
T 2pgw_A 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTV----------GIGECT----------VAPDQT--GTA 61 (384)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCE----------EEEEEE----------CTTCHH--HHH
T ss_pred CEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCE----------EEEccC----------CCchHH--HHH
Confidence 78999998876 23333 36799999999 886 999974 122 22 566
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHH-HHHhcCCCCCCc---c-chhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccc
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAI-MLEIDGTPNKSK---I-GANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELV 184 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~-l~~~~~~~~~~~---i-g~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~ 184 (394)
.|++.++|.|+|+||.+++++|+. |++. +.+.+. . ..+|++|||+||||+.||.+|+|||+||| |..+++
T Consensus 62 ~i~~~l~~~l~g~d~~~~~~~~~~~l~~~--~~~~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~ 136 (384)
T 2pgw_A 62 AILYRLAKHLVGHSPHDVAPLIARIFHQE--YLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLG---GAHRKA 136 (384)
T ss_dssp HHHHHHHGGGTTSCGGGHHHHHHHHHHHH--TGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTT---CCSSSE
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHH--hhhcccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcC---CCCCCc
Confidence 688789999999999999999999 9541 111221 1 46899999999999999999999999999 765667
Q ss_pred cceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHH
Q 016156 185 MPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGL 264 (394)
Q Consensus 185 iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l 264 (394)
+|+ |++++++ +.++ ..+++.++..+||+.+| .|.| + +.+.+.+.+
T Consensus 137 v~~--~~~~~~~-------~~e~---------~~~~a~~~~~~Gf~~iK----ik~g----------~---~~~~~~e~v 181 (384)
T 2pgw_A 137 VGY--FYFLQGE-------TAEE---------LARDAAVGHAQGERVFY----LKVG----------R---GEKLDLEIT 181 (384)
T ss_dssp EEB--CEECCCS-------SHHH---------HHHHHHHHHHTTCCEEE----EECC----------S---CHHHHHHHH
T ss_pred eEE--EEECCCC-------CHHH---------HHHHHHHHHHcCCCEEE----ECcC----------C---CHHHHHHHH
Confidence 665 4544321 2222 25566666666777777 4432 1 222223444
Q ss_pred HHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHH
Q 016156 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWS 344 (394)
Q Consensus 265 ~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~ 344 (394)
+.||+++ ||+.|++|+ |+.| +.++++++ .+.+++|++.|||||++++|++
T Consensus 182 ~avr~a~------gd~~l~vD~--------n~~~---------------~~~~a~~~-~~~l~~~~i~~iEqP~~~~~~~ 231 (384)
T 2pgw_A 182 AAVRGEI------GDARLRLDA--------NEGW---------------SVHDAINM-CRKLEKYDIEFIEQPTVSWSIP 231 (384)
T ss_dssp HHHHTTS------TTCEEEEEC--------TTCC---------------CHHHHHHH-HHHHGGGCCSEEECCSCTTCHH
T ss_pred HHHHHHc------CCcEEEEec--------CCCC---------------CHHHHHHH-HHHHHhcCCCEEeCCCChhhHH
Confidence 4444443 588999999 5555 46788886 4569999999999999999999
Q ss_pred HHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 345 SWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 345 ~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|++|++++++||++||. +.++++++++++.++||++++|++++||+|+
T Consensus 232 ~~~~l~~~~~iPI~~de~-i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 280 (384)
T 2pgw_A 232 AMAHVREKVGIPIVADQA-AFTLYDVYEICRQRAADMICIGPREIGGIQP 280 (384)
T ss_dssp HHHHHHHHCSSCEEESTT-CCSHHHHHHHHHTTCCSEEEECHHHHTSHHH
T ss_pred HHHHHHhhCCCCEEEeCC-cCCHHHHHHHHHcCCCCEEEEcchhhCCHHH
Confidence 999999999999999997 5689999999999999999999999999974
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=311.98 Aligned_cols=259 Identities=18% Similarity=0.202 Sum_probs=201.6
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|+|++|+.+.+- .+.| ++++.|+|+|||++ |+||+.... .+.|.+++++++...|
T Consensus 8 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~tdG~~----------G~GE~~~~~---~~~~~~e~~~~~~~~i 74 (375)
T 1r0m_A 8 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGEGVQ----------GVAEGTMEA---RPMYREETIAGALDLL 74 (375)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEETTEE----------EEEECCCBS---SSSSSSCBHHHHHHHH
T ss_pred cEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEECCeE----------EEEEEecCC---CCcccCCCHHHHHHHH
Confidence 899999988772 1222 35799999998775 999975321 1367888888888889
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
++.++|.|+|+|+.+++++|+.|..+. + +.+|++|||+||||+.||.+|+|||+||| |. +..+|++ |+
T Consensus 75 ~~~l~~~l~g~d~~~~~~l~~~~~~~~-----g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~-~~~~~~~-~~ 142 (375)
T 1r0m_A 75 RGTFLPAILGQTFANPEAVSDALGSYR-----G--NRMARAMVEMAAWDLWARTLGVPLGTLLG---GH-KEQVEVG-VS 142 (375)
T ss_dssp HHTHHHHHTTCEESSHHHHHHTTTTSC-----S--CHHHHHHHHHHHHHHHHHHHTCBHHHHHT---CC-CSEEEBC-EE
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHcc-----C--chHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCceeee-EE
Confidence 999999999999999999998774321 1 35799999999999999999999999999 65 3467765 44
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHH
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAI 271 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av 271 (394)
+ |.+. +.++ ..+++.++..+||+.+| .| ++ + +.+.+.+++||+++
T Consensus 143 ~---g~~~----~~~~---------~~~~a~~~~~~G~~~iK----ik-------~~------~--~~d~~~v~avr~a~ 187 (375)
T 1r0m_A 143 L---GIQA----DEQA---------TVDLVRRHVEQGYRRIK----LK-------IK------P--GWDVQPVRATREAF 187 (375)
T ss_dssp E---CCCS----SHHH---------HHHHHHHHHHTTCSCEE----EE-------CB------T--TBSHHHHHHHHHHC
T ss_pred e---cCCC----CHHH---------HHHHHHHHHHhcccEEE----Ee-------cC------h--HHHHHHHHHHHHHc
Confidence 2 2210 2222 25667777777788777 34 21 2 22356666666654
Q ss_pred HHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHh
Q 016156 272 EKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQS 351 (394)
Q Consensus 272 ~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~ 351 (394)
+++.|++|+ |+.|+ .++ ++++. .+++|++.|||||++++|+++|++|++
T Consensus 188 ------~~~~l~vDa--------n~~~~---------------~~~-~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~~ 236 (375)
T 1r0m_A 188 ------PDIRLTVDA--------NSAYT---------------LAD-AGRLR-QLDEYDLTYIEQPLAWDDLVDHAELAR 236 (375)
T ss_dssp ------TTSCEEEEC--------TTCCC---------------GGG-HHHHH-TTGGGCCSCEECCSCTTCSHHHHHHHH
T ss_pred ------CCCeEEEeC--------CCCCC---------------HHH-HHHHH-HHHhCCCcEEECCCCcccHHHHHHHHH
Confidence 588999999 56664 456 77644 589999999999999999999999999
Q ss_pred hcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 352 SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 352 ~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 237 ~~~ipIa~dE~-~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 278 (375)
T 1r0m_A 237 RIRTPLCLDES-VASASDARKALALGAGGVINLKVARVGGHAE 278 (375)
T ss_dssp HCSSCEEESTT-CCSHHHHHHHHHHTSCSEEEECTTTTTSHHH
T ss_pred hCCCCEEecCc-cCCHHHHHHHHHhCCCCEEEECcchhcCHHH
Confidence 99999999997 5789999999999999999999999999974
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=318.37 Aligned_cols=282 Identities=15% Similarity=0.197 Sum_probs=187.7
Q ss_pred hhhcCCc--ceEEEEEEEEEe--c-----CCC--Cce---EEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccc
Q 016156 37 ASTASSS--AKVKSVKARQII--D-----SRG--NPT---VEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGG 101 (394)
Q Consensus 37 a~~f~~~--~~I~~V~~r~v~--~-----~~g--~~t---v~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g 101 (394)
-.||++. ++|++++..+|- | ..| .|+ -+|+|+|| |++ |+||+. ++
T Consensus 17 ~~~~~~~~~p~i~~~~v~pva~~d~~l~~~~g~h~p~f~RtiV~v~Td~Gi~----------G~GE~~----------g~ 76 (464)
T 4g8t_A 17 NLYFQSMSTPIITEMQVIPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNT----------GVGEVP----------GG 76 (464)
T ss_dssp -------CCCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEE----------CC
T ss_pred ceeeeccCCCEEeEEEEEEecCCCcccccCCcccCCccceEEEEEEECCCCE----------EEEeCC----------Cc
Confidence 3577666 899999999982 3 233 342 36999999 986 999962 34
Q ss_pred hhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCC---------CCccchhhHHHHHHHHHHHhHhhcCChhHH
Q 016156 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPN---------KSKIGANAILGVSLSVCRAGAGAKGVPLYK 172 (394)
Q Consensus 102 ~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~---------~~~ig~~A~sAvdiAlwda~ak~~g~PLy~ 172 (394)
+.+. +.|+ .++|.|+|+||.++++||+.|++.-.... ...+..+|+||||+||||++||.+|+|||+
T Consensus 77 ~~~~---~~le-~~~p~liG~dp~~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~ 152 (464)
T 4g8t_A 77 EKIR---QTLE-DAKPLVIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVAS 152 (464)
T ss_dssp HHHH---HHHH-HHGGGTTTCBGGGHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGG
T ss_pred HHHH---HHHH-HHHHHHcCCCHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 3333 3354 48999999999999999999987321111 112456799999999999999999999999
Q ss_pred HhhcccCCcccccceeeEEeecCCcCCCCCCcc---c----ceeecc-CCCCCHHHHHHHHHH-----HHHHHHHHHHhh
Q 016156 173 HIQELSGTKELVMPVPAFNVINGGSHAGNNLAM---Q----EFMILP-VGATSFAEALRMGSE-----VYHILKGIIKEK 239 (394)
Q Consensus 173 lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~---~----e~~i~p-~~~~~~~ea~~~~~~-----~~~~lK~~i~~k 239 (394)
|||+ |+.|+++|++.+....|.. ....+.. . ..+... .......+.++...+ ||+++| .|
T Consensus 153 LLGg--G~~Rd~V~~y~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~K----lK 225 (464)
T 4g8t_A 153 LLGD--GQQRDAVEMLGYLFFIGDR-KKTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFK----LK 225 (464)
T ss_dssp GSTT--SCCCSEEEBCEEECCBCCG-GGSCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEE----EE
T ss_pred HhCC--CCCCceEEEEEEeeccCcc-cccchhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEE----Ee
Confidence 9995 5778899987655432211 0000000 0 000000 001122232222222 455454 34
Q ss_pred cCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHH
Q 016156 240 YGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLG 319 (394)
Q Consensus 240 ~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i 319 (394)
.| ..+ .++.++.|+ +++++. ||+.|++|+ |+.| |.++++
T Consensus 226 vG------------~~~---~~~di~~v~-avrea~--pd~~L~vDa--------N~~w---------------t~~~Ai 264 (464)
T 4g8t_A 226 GG------------VLD---GFEEAEAVT-ALAKRF--PDARITLDP--------NGAW---------------SLDEAV 264 (464)
T ss_dssp CS------------SSC---HHHHHHHHH-HHHHHS--TTCCEEEEC--------TTCB---------------CHHHHH
T ss_pred CC------------CCC---HHHHHHHHH-HHHhhC--CCceEEEEC--------CCcc---------------CHHHHH
Confidence 22 112 233444442 333333 789999999 5655 567888
Q ss_pred HHHHHhhhcCCceeeeCCCCCCCH----HHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 320 DLYKEFVRDFPIVSIEDPFDQDDW----SSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 320 ~~~~~~l~~~~i~~iEdPl~~~D~----~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++ .+.++++ +.|||||++++|. +.+++|++++++||++||. +.+.++++++++.+++|++|+| .++||||+
T Consensus 265 ~~-~~~le~~-l~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~-~~~~~~~~~~i~~~avdi~~~d-~~~GGit~ 339 (464)
T 4g8t_A 265 KI-GKQLKGV-LAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMI-ATDWRQMGHTISLQSVDIPLAD-PHFWTMQG 339 (464)
T ss_dssp HH-HHHTTTT-CSCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSS-SCSHHHHHHHHHHTCCSEEBCC-HHHHCHHH
T ss_pred HH-HHHhhhc-cceeecCcCcccccchHHHHHhhhccCCCCcccccc-ccchhhHHHHHHhhCCCEEecc-ccccchHH
Confidence 75 5558888 9999999999985 7789999999999999997 5679999999999999999999 58999974
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=310.72 Aligned_cols=259 Identities=17% Similarity=0.167 Sum_probs=198.4
Q ss_pred ceEEEEEEEEEe---c------CCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQII---D------SRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v~---~------~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+- . +.| ++++.|+|+|+ |.+ |+||+... + +.|.+++..++.
T Consensus 3 mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~--~--~~~~~~~~~~~~ 68 (379)
T 2rdx_A 3 LRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQ----------GCGEFTPC--G--ENYMIAHSEGVD 68 (379)
T ss_dssp CCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCE----------EEEEEBCS--S--TTSSSCCTTHHH
T ss_pred CEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCE----------EEEEeecC--C--CCcCCCCHHHHH
Confidence 899999998772 1 122 24699999999 876 99998543 1 356777777778
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccccee
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p 188 (394)
..|+ .++|.|+|+||.+++++|+.|... . ++ ..+|++|||+||||+.||.+|+|||+||| |..++++|+
T Consensus 69 ~~i~-~l~~~l~g~d~~~~~~~~~~l~~~---~-~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~v~~- 137 (379)
T 2rdx_A 69 AFAR-LAAPQLLGQDPRQVARMERLMDHL---V-QG--HGYAKAPFDAAFWDILGQATGQPVWMLLG---GKLCDGAPM- 137 (379)
T ss_dssp HHHH-HHHHHHTTSCTTCHHHHHHHHHHH---S-SS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTT---SCCCSSEEB-
T ss_pred HHHH-HHHHHHcCCChhhHHHHHHHHHHH---h-cc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcC---CCCCCceeE-
Confidence 8888 799999999999999999999532 1 12 46899999999999999999999999999 765667776
Q ss_pred eEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 189 ~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
|+++ |. .+.++ ..+++.++..+||+.+| .|.| . +.+.+.+.++.||
T Consensus 138 -~~~~--~~-----~~~~~---------~~~~a~~~~~~Gf~~iK----ik~g-------~------~~~~~~e~v~avr 183 (379)
T 2rdx_A 138 -YRVA--PQ-----RSEAE---------TRAELARHRAAGYRQFQ----IKVG-------A------DWQSDIDRIRACL 183 (379)
T ss_dssp -CEEC--CC-----SCSHH---------HHHHHHHHHHTTCCEEE----EECC-------S------CHHHHHHHHHHHG
T ss_pred -EEEe--cC-----CCHHH---------HHHHHHHHHHcCCCEEE----Eecc-------C------CHHHHHHHHHHHH
Confidence 4443 21 01222 35666666667787777 4422 1 1222233444444
Q ss_pred HHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHH
Q 016156 269 DAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWAS 348 (394)
Q Consensus 269 ~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~ 348 (394)
+++ | +|+.|++|+ |+.| +.++++++. +.++++++ |||||++ |++++++
T Consensus 184 ~a~---g--~d~~l~vDa--------n~~~---------------~~~~a~~~~-~~l~~~~i-~iE~P~~--~~~~~~~ 231 (379)
T 2rdx_A 184 PLL---E--PGEKAMADA--------NQGW---------------RVDNAIRLA-RATRDLDY-ILEQPCR--SYEECQQ 231 (379)
T ss_dssp GGS---C--TTCEEEEEC--------TTCS---------------CHHHHHHHH-HHTTTSCC-EEECCSS--SHHHHHH
T ss_pred Hhc---C--CCCEEEEEC--------CCCC---------------CHHHHHHHH-HHHHhCCe-EEeCCcC--CHHHHHH
Confidence 433 3 389999999 5545 567888865 55999999 9999998 9999999
Q ss_pred HHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 349 LQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 349 L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++++++||++||. ++++++++++++.+++|++++|++++||||+
T Consensus 232 l~~~~~iPI~~de~-i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 276 (379)
T 2rdx_A 232 VRRVADQPMKLDEC-VTGLHMAQRIVADRGAEICCLKISNLGGLSK 276 (379)
T ss_dssp HHTTCCSCEEECTT-CCSHHHHHHHHHHTCCSEEEEETTTTTSHHH
T ss_pred HHhhCCCCEEEeCC-cCCHHHHHHHHHcCCCCEEEEeccccCCHHH
Confidence 99999999999997 5789999999999999999999999999974
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=316.99 Aligned_cols=251 Identities=18% Similarity=0.182 Sum_probs=190.8
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCC------------C
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIR------------D 126 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~------------~ 126 (394)
+++++|+| |+ |++ |+||+..+ +.|.++++..+...|+ .+.|.|+|+||. +
T Consensus 30 ~~~v~V~v-td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~l~-~~~~~l~g~d~~~~~~~~~~~~~~~ 92 (377)
T 2pge_A 30 KPTWFVRL-DIDGHG----------GQGEVSLI-----PGLSLDPEEQIGRELD-LLARRLRAEEPIRLRQFLAERGGAD 92 (377)
T ss_dssp ECEEEEEE-EETTEE----------EEEEEECC-----TTTCSSCHHHHHHHHH-HHHHHHHHSCCHHHHHHHHHTSSCT
T ss_pred cceEEEEE-EcCCCE----------EEEEeccC-----CCCCcCCHHHHHHHHH-HHHHHHhCCCccchhhhhhcccccc
Confidence 47899999 88 886 99998654 2466788888888887 589999999984 4
Q ss_pred HHHHHHHHHHhcCC-----CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCC
Q 016156 127 QAEVDAIMLEIDGT-----PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGN 201 (394)
Q Consensus 127 ~e~Id~~l~~~~~~-----~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~ 201 (394)
.+++|+.|.+++++ ...++...+|++|||+||||+.||.+|+|||+||| |. ++++|+++ +++++
T Consensus 93 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llG---g~-~~~vp~~~--~i~~~----- 161 (377)
T 2pge_A 93 FSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFT---RG-EKRIPVNG--LIWMG----- 161 (377)
T ss_dssp TSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTT---TT-SCCEEBCE--EECCC-----
T ss_pred HHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhC---CC-CCeEEEeE--EecCC-----
Confidence 47788777553211 11123457899999999999999999999999999 65 56777654 44332
Q ss_pred CCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcE
Q 016156 202 NLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKIN 281 (394)
Q Consensus 202 ~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~ 281 (394)
+. |. .++++.++..+||+++| .|.| . . +.++.++.|+++.+.+|+ +++.
T Consensus 162 --~~-e~--------~~~~a~~~~~~G~~~~K----~Kvg-------~-----~---~~~~d~~~v~avr~~~g~-~~~~ 210 (377)
T 2pge_A 162 --EA-AF--------MQEQIEAKLAEGYGCLK----LKIG-------A-----I---DFDKECALLAGIRESFSP-QQLE 210 (377)
T ss_dssp --CH-HH--------HHHHHHHHHHTTCSEEE----EEC------------------CHHHHHHHHHHHHHHSCT-TTCE
T ss_pred --CH-HH--------HHHHHHHHHHHhhhhhe----eecC-------C-----C---ChHHHHHHHHHHHHHcCC-CCce
Confidence 11 21 34677777777888888 4533 1 1 235566666555554542 3799
Q ss_pred EEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecC
Q 016156 282 IGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD 361 (394)
Q Consensus 282 l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde 361 (394)
|++|+ |+.|+ .+++++++ +.+++|+|.|||||++++|+++|++|++++++||++||
T Consensus 211 l~vDa--------N~~~~---------------~~~a~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dE 266 (377)
T 2pge_A 211 IRVDA--------NGAFS---------------PANAPQRL-KRLSQFHLHSIEQPIRQHQWSEMAALCANSPLAIALDE 266 (377)
T ss_dssp EEEEC--------TTBBC---------------TTTHHHHH-HHHHTTCCSEEECCBCSSCHHHHHHHHHHCSSCEEESG
T ss_pred EEEEC--------CCCCC---------------HHHHHHHH-HHHhcCCCcEEEccCCcccHHHHHHHHhhCCCcEEECC
Confidence 99999 67674 45777765 56999999999999999999999999999999999999
Q ss_pred ccccCHHH--HHHHHhcCCCcEEeeccccccccCC
Q 016156 362 LLVTNPKR--IAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 362 ~~~~~~~~--~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+..+ ..+ ++++++.+++|++++|++++||||+
T Consensus 267 ~~~~-~~~~~~~~~i~~~a~d~i~ik~~~~GGit~ 300 (377)
T 2pge_A 267 ELIG-LGAEQRSAMLDAIRPQYIILKPSLLGGFHY 300 (377)
T ss_dssp GGTT-CCTHHHHHHHHHHCCSEEEECHHHHTSHHH
T ss_pred ccCC-cchHHHHHHHHhCCCCEEEECchhcCCHHH
Confidence 8654 555 8899999999999999999999984
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=318.74 Aligned_cols=275 Identities=19% Similarity=0.178 Sum_probs=191.2
Q ss_pred ceEEEEEEEEEe--cCC-----C--C---ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--DSR-----G--N---PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--~~~-----g--~---~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.|- |+. | . ..+.|+|+|| |++ |+||+. +++. +...
T Consensus 9 ~~It~v~v~~v~~~d~~~~~~~g~h~~~~~~~iV~v~td~Gi~----------G~GE~~----------~~~~---v~~~ 65 (455)
T 3pfr_A 9 PVITDMKVIPVAGHDSMLMNVGGAHSPYFTRNIVILTDNSGHT----------GVGEAP----------GGAT---IENA 65 (455)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEE----------CSHH---HHHH
T ss_pred CEEEEEEEEEeccCCccccccccCCCCcceEEEEEEEECCCCE----------EEEeCC----------CcHH---HHHH
Confidence 899999999993 221 1 1 3469999999 986 999963 2323 3344
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHH--hcC---CCCCCc----cchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLE--IDG---TPNKSK----IGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~--~~~---~~~~~~----ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~ 181 (394)
|+ .++|.|+|+||.+++++|+.|++ .-. .++++. +..+|++|||+||||++||.+|+|||+|||+ |+.
T Consensus 66 i~-~l~p~LiG~dp~~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGg--G~~ 142 (455)
T 3pfr_A 66 LT-EAIPHVVGRPISILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGP--GKQ 142 (455)
T ss_dssp HH-HHGGGTTTCBGGGHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTT--SCC
T ss_pred HH-HHHHHhcCCChhHHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC--CCc
Confidence 54 48999999999999999999986 211 011111 1168999999999999999999999999994 466
Q ss_pred ccccceeeEEeecCCcCCCCCCccc-c------ee-----eccCCCCCHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccC
Q 016156 182 ELVMPVPAFNVINGGSHAGNNLAMQ-E------FM-----ILPVGATSFAEALRMGS-EVYHILKGIIKEKYGQDACNVG 248 (394)
Q Consensus 182 ~~~iP~p~~~~i~gG~~~~~~l~~~-e------~~-----i~p~~~~~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg 248 (394)
|+++|++.+....|.. ....+.+. . .+ -..+++...+++.++.. +||+++| .|.|
T Consensus 143 r~~v~~y~~~~~~gd~-~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----lKvG------- 210 (455)
T 3pfr_A 143 RDEVTVLGYLFYVGDD-KITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFK----LKGG------- 210 (455)
T ss_dssp CSEEEBCEEECCBCCG-GGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEE----EECS-------
T ss_pred CCeEEEeeeecccccc-ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEE----EcCC-------
Confidence 7888886543211110 00000000 0 00 00011223455555554 4788777 5533
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc
Q 016156 249 DEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD 328 (394)
Q Consensus 249 ~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~ 328 (394)
..+. ++.++.| +++|+++ +++.|++|+ |+.| |.++++++ .+.+++
T Consensus 211 -----~~~~---~~Di~~v-~avRea~--pd~~L~vDa--------N~~w---------------~~~~A~~~-~~~L~~ 255 (455)
T 3pfr_A 211 -----VFEG---SKEIDTV-IELKKHF--PDARITLDP--------NGCW---------------SLDEAIQL-CKGLND 255 (455)
T ss_dssp -----SSCH---HHHHHHH-HHHHHHC--TTCCEEEEC--------TTBS---------------CHHHHHHH-HTTCTT
T ss_pred -----CCCH---HHHHHHH-HHHHHhC--CCCeEeecC--------CCCC---------------CHHHHHHH-HHhhcc
Confidence 1122 3344444 3344443 689999999 5655 56788875 556899
Q ss_pred CCceeeeCCCCCCC----HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 329 FPIVSIEDPFDQDD----WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 329 ~~i~~iEdPl~~~D----~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
| +.|||||++++| ++++++|++++++||++||. +++.++++++++.+++|++|+|+ ++||||+
T Consensus 256 ~-l~~iEeP~~~~d~~~~~~~~~~l~~~~~iPIa~dE~-~~~~~~~~~~i~~~a~di~~~d~-~~GGit~ 322 (455)
T 3pfr_A 256 V-LTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMI-ATNWREMCHAIMLQSVDIPLADP-HFWTLTG 322 (455)
T ss_dssp T-CSEEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSS-CCSHHHHHHHHHHTCCSEEBCCH-HHHCHHH
T ss_pred c-ceeeecCCChhhccchHHHHHHHHhcCCCCEEeCCC-cCCHHHHHHHHHcCCCCEEEecC-CcCCHHH
Confidence 9 999999999999 79999999999999999996 67899999999999999999999 7999974
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=314.65 Aligned_cols=268 Identities=19% Similarity=0.226 Sum_probs=198.2
Q ss_pred ceEEEEEEEEEec--------CC------CCceEEEEEEEC---CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHH
Q 016156 44 AKVKSVKARQIID--------SR------GNPTVEVDLITD---DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106 (394)
Q Consensus 44 ~~I~~V~~r~v~~--------~~------g~~tv~V~V~td---G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~ 106 (394)
|+|++|+++.+-- +. ...++.|+|+|| |++ |+||+... +.+.+.
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~----------G~Ge~~~~---------g~~~~~ 62 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLA----------GYGLVFTI---------GRGNDV 62 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCE----------EEEEEEEC---------STTHHH
T ss_pred CcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCE----------EEEeecCC---------CCCcHH
Confidence 7999999988821 00 124699999997 554 99998541 223344
Q ss_pred HHHHhHHhHhhhhcCCCCCCHHH----HHHHHHHhcCC---CCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 107 AVKNINDILGPKLVGVDIRDQAE----VDAIMLEIDGT---PNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 107 a~~~I~~~l~p~LiG~dp~~~e~----Id~~l~~~~~~---~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
+...++ .|+|.|+|+||.+++. +|+.|...+.+ +...++..+|++|||+||||++||.+|+|||+||| |
T Consensus 63 v~~~i~-~l~~~liG~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLG---G 138 (441)
T 2hxt_A 63 QTAAVA-ALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIA---E 138 (441)
T ss_dssp HHHHHH-TTHHHHTTCBHHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHH---T
T ss_pred HHHHHH-HHHHHHcCCChHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhc---C
Confidence 445565 6999999999999875 67777531111 11123446899999999999999999999999999 6
Q ss_pred Cccccc---------------------------------------ceeeEEeecCCcCCCCCCcccceeeccCCCCCHHH
Q 016156 180 TKELVM---------------------------------------PVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAE 220 (394)
Q Consensus 180 ~~~~~i---------------------------------------P~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~e 220 (394)
..+.++ ++|+|++..|+. + .+.++ ..++
T Consensus 139 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~--~--~~~e~---------~~~~ 205 (441)
T 2hxt_A 139 LTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWL--G--YSDEK---------LVRL 205 (441)
T ss_dssp SCHHHHHHHCCCTTCTTTCCHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECT--T--SCHHH---------HHHH
T ss_pred CCcccccccccccccccccchhhhhhhhhcccccchhhhhhcccCCcceeEeccccc--C--CCHHH---------HHHH
Confidence 433222 567787644432 1 12222 3567
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeec
Q 016156 221 ALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300 (394)
Q Consensus 221 a~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~ 300 (394)
+.++..+||+.+| .|.| . +.+.+.+.+++||+++ | +|+.|++|+ |+.|
T Consensus 206 a~~~~~~Gf~~vK----ik~g-------~------~~~~d~e~v~avR~a~---G--~d~~l~vDa--------n~~~-- 253 (441)
T 2hxt_A 206 AKEAVADGFRTIK----LKVG-------A------NVQDDIRRCRLARAAI---G--PDIAMAVDA--------NQRW-- 253 (441)
T ss_dssp HHHHHHTTCSEEE----EECC-------S------CHHHHHHHHHHHHHHH---C--SSSEEEEEC--------TTCC--
T ss_pred HHHHHHcCCCEEE----EccC-------C------CHHHHHHHHHHHHHhc---C--CCCeEEEEC--------CCCC--
Confidence 7777777888887 4432 1 2233456666666666 3 489999999 5655
Q ss_pred cCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc-CCeEEecCccccCHHHHHHHHhcCCC
Q 016156 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSC 379 (394)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~-~i~I~gde~~~~~~~~~~~~i~~~a~ 379 (394)
+.+++++++. .+++|++.|||||++++|+++|++|++++ ++||++||. ++++++++++++.+++
T Consensus 254 -------------~~~~a~~~~~-~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~iPIa~dE~-~~~~~~~~~~i~~~~~ 318 (441)
T 2hxt_A 254 -------------DVGPAIDWMR-QLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEH-TQNRVVFKQLLQAGAV 318 (441)
T ss_dssp -------------CHHHHHHHHH-TTGGGCCSCEECCSCTTCHHHHHHHHHHHTTSCEEECTT-CCSHHHHHHHHHHTCC
T ss_pred -------------CHHHHHHHHH-HHHhcCCCeeeCCCCHHHHHHHHHHHhhCCCCCEEEeCC-cCCHHHHHHHHHcCCC
Confidence 4678888655 49999999999999999999999999998 599999997 6789999999999999
Q ss_pred cEEeeccccccccCC
Q 016156 380 NGLLLKVNHLFEIKS 394 (394)
Q Consensus 380 d~i~ik~~~~Ggit~ 394 (394)
|++++|++++||||+
T Consensus 319 d~v~ik~~~~GGite 333 (441)
T 2hxt_A 319 DLIQIDAARVGGVNE 333 (441)
T ss_dssp SEECCCTTTSSHHHH
T ss_pred CEEEeCcceeCCHHH
Confidence 999999999999985
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=310.82 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=179.8
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeec----CCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHH
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRD----GDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIML 135 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d----~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~ 135 (394)
++++|+|+|+ |++ |+||+..... +..+.|.+++ +...|++.++|.|+|+||.+++++|+.|.
T Consensus 51 ~~v~V~v~td~G~~----------G~GE~~~~~~sGa~~r~~~~~~~~---~~~~i~~~l~p~LiG~d~~~~~~i~~~l~ 117 (413)
T 1kko_A 51 ECVSVQLILENGAV----------AVGDCAAVQYSGAGGRDPLFLAEH---FIPFLNDHIKPLLEGRDVDAFLPNARFFD 117 (413)
T ss_dssp EEEEEEEEETTSCE----------EEEEECCCTTTTSTTCCCCCCHHH---HHHHHHHHTHHHHTTCBCSCSHHHHHHHH
T ss_pred ceEEEEEEECCCCE----------EEEEecccccccccccCccccHHH---HHHHHHHHHHHHHcCCChHhHHHHHHHHH
Confidence 5799999999 986 7777643200 0013455544 44457778999999999999999999997
Q ss_pred HhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC--cccccceeeEEeecCCcCCCCCCcccceeeccC
Q 016156 136 EIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT--KELVMPVPAFNVINGGSHAGNNLAMQEFMILPV 213 (394)
Q Consensus 136 ~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~--~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~ 213 (394)
... ...+....+|++|||+||||+.||.+|+|||+|||+.... .++ |+|+|++ ||.+..+ +.++
T Consensus 118 ~~~--~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~--~vp~y~~--~g~~~~~--~~~~------ 183 (413)
T 1kko_A 118 KLR--IDGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPE--AIPLFGQ--SGDDRYI--AVDK------ 183 (413)
T ss_dssp HCE--ETTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCC--CCCEECC--CTTCTTH--HHHH------
T ss_pred hhh--cccCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccC--CeEEEEe--cCccccC--CHHH------
Confidence 642 1111234789999999999999999999999999932111 123 5666764 4433211 0111
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH----HHHHHHHHHHH-cCCCCCcEEEEecc
Q 016156 214 GATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE----GLVLLTDAIEK-AGYTGKINIGMDVA 287 (394)
Q Consensus 214 ~~~~~~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~----~l~~v~~Av~~-ag~~gdi~l~iD~a 287 (394)
..+++.+...+| |+.+| .| +|. +.+.+.+ .++.+ +++|+ +| +++.|++|+
T Consensus 184 ---~~~~~~~~~~~G~~~~iK----~K-------vG~------~~~~~~~~l~~d~~~v-~aiR~~~G--~~~~L~vDa- 239 (413)
T 1kko_A 184 ---MILKGVDVLPHALINNVE----EK-------LGF------KGEKLREYVRWLSDRI-LSLRSSPR--YHPTLHIDV- 239 (413)
T ss_dssp ---HHHTTCSEEEETTCCCCC----CC-------CCT------TSHHHHHHHHHHHHHH-HHHCSSTT--CCCEEEEEC-
T ss_pred ---HHHHHHHHHhCCCccEEE----Ee-------cCC------ChhhHHHHHHHHHHHH-HHHHHhhC--CCCeEEEEC-
Confidence 011111112234 55555 34 331 1111121 11232 33332 23 389999999
Q ss_pred cccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC--Cce-eeeCCCC----CCCHHHHHHHHhh-----cCC
Q 016156 288 ASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF--PIV-SIEDPFD----QDDWSSWASLQSS-----VDI 355 (394)
Q Consensus 288 a~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~--~i~-~iEdPl~----~~D~~~~~~L~~~-----~~i 355 (394)
|++|.+. ..||.+++++++.+ ++++ ++. |||||++ ++|+++|++|+++ +++
T Consensus 240 -------n~~~~~~---------~~~~~~~A~~~~~~-L~~~~~~~~l~iEqP~~~~~~~~d~~~~~~l~~~l~~~g~~i 302 (413)
T 1kko_A 240 -------YGTIGLI---------FDMDPVRCAEYIAS-LEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGV 302 (413)
T ss_dssp -------TTHHHHH---------TTTCHHHHHHHHHH-TGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred -------CCccccc---------cCCCHHHHHHHHHH-HHhccCCcceEEECCcCCCCCcccHHHHHHHHHhcccCCCCC
Confidence 5766543 14678999998776 6663 322 9999999 7899999999999 889
Q ss_pred eEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 356 QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 356 ~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++||. ++++++++++++.+++|++|||++++||||+
T Consensus 303 pIa~dE~-~~~~~~~~~~i~~~a~d~i~ik~~~~GGite 340 (413)
T 1kko_A 303 KIVADEW-CNTYQDIVDFTDAGSCHMVQIKTPDLGGIHN 340 (413)
T ss_dssp EEEECTT-CCSHHHHHHHHHTTCCSEEEECGGGGSSTHH
T ss_pred cEEcCCC-CCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 9999995 7889999999999999999999999999984
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=305.10 Aligned_cols=270 Identities=10% Similarity=0.127 Sum_probs=195.0
Q ss_pred ceEEEEEEEEEecCCC-------CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHH--HHHHHhHHh
Q 016156 44 AKVKSVKARQIIDSRG-------NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVL--NAVKNINDI 114 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g-------~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~--~a~~~I~~~ 114 (394)
|+|++|+.+.+--..- +++++|+|+|+|++ |+||+.... |.+++.. .+...|++.
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~V~v~tdG~~----------G~GE~~~~~------~~~~~~~~~~~~~~i~~~ 66 (401)
T 2hzg_A 3 LKIDAVDLFYLSMPEVTDAADGSQDALLVRVAAGGHI----------GWGECEAAP------LPSIAAFVCPKSHGVCRP 66 (401)
T ss_dssp CBEEEEEEEEEECSSCCSSSCGGGEEEEEEEEETTEE----------EEEEECSCH------HHHHHHHHCCCSBTTBCC
T ss_pred CEEEEEEEEEEeccCCCccccccceEEEEEEEeCCcE----------EEEeeeccc------CCcccchhHHHHHHHHHH
Confidence 8999999988832111 45899999998765 999974321 1233331 345557778
Q ss_pred HhhhhcCCCCCCHH-HHHHHHHHhcCCCCCCccchh--hHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEE
Q 016156 115 LGPKLVGVDIRDQA-EVDAIMLEIDGTPNKSKIGAN--AILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFN 191 (394)
Q Consensus 115 l~p~LiG~dp~~~e-~Id~~l~~~~~~~~~~~ig~~--A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~ 191 (394)
++|.|+|+ |.+++ .+++.+...... ++.+..+ |++|||+||||+.||.+|+|||+||| |..++++|+ |+
T Consensus 67 l~~~l~G~-~~~~~~~l~~~~~~~~~~--g~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~~~vp~--~~ 138 (401)
T 2hzg_A 67 VSDSVLGQ-RLDGPDDIARIAALVGYN--SMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLG---YSASHGKRP--YA 138 (401)
T ss_dssp GGGGTTTC-BCSSHHHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTT---CSCCCCBEE--EE
T ss_pred HHHHhCCC-CCCHHHHHHHHHHhhccC--CccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCCCCceEe--eE
Confidence 99999999 99986 232322211000 0013357 99999999999999999999999999 765667776 44
Q ss_pred eecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCC-CChHHHHHHHHHH
Q 016156 192 VINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNV-QDNREGLVLLTDA 270 (394)
Q Consensus 192 ~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~-~~~~~~l~~v~~A 270 (394)
++.++ .+.++ ..+++.++..+||+.+| .|. ..+| + ++ +.+.+.+++||++
T Consensus 139 ~~~~~------~~~~~---------~~~~a~~~~~~Gf~~iK----ik~----spvG---~---~~~~~~~e~v~avr~a 189 (401)
T 2hzg_A 139 SLLFG------DTPQE---------TLERARAARRDGFAAVK----FGW----GPIG---R---GTVAADADQIMAAREG 189 (401)
T ss_dssp EEECC------SSHHH---------HHHHHHHHHHTTCSEEE----EES----TTTT---S---SCHHHHHHHHHHHHHH
T ss_pred EcCCC------CCHHH---------HHHHHHHHHHhCCCeEE----EcC----CCCC---C---CHHHHHHHHHHHHHHH
Confidence 43322 12333 25667777777888887 341 0122 1 23 3345667777776
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ | +|+.|++|+ |+.|. .+.+++++++.. +++|++.|||||++++|+++|++|+
T Consensus 190 ~---G--~d~~l~vDa--------n~~~~-------------~~~~~a~~~~~~-l~~~~i~~iEqP~~~~d~~~~~~l~ 242 (401)
T 2hzg_A 190 L---G--PDGDLMVDV--------GQIFG-------------EDVEAAAARLPT-LDAAGVLWLEEPFDAGALAAHAALA 242 (401)
T ss_dssp H---C--SSSEEEEEC--------TTTTT-------------TCHHHHHTTHHH-HHHTTCSEEECCSCTTCHHHHHHHH
T ss_pred h---C--CCCeEEEEC--------CCCCC-------------CCHHHHHHHHHH-HHhcCCCEEECCCCccCHHHHHHHH
Confidence 6 3 489999999 45440 046788886554 8999999999999999999999999
Q ss_pred h-hcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 S-SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~-~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+ ++++||++||.. .++++++++++.+++|++++|++++||||+
T Consensus 243 ~~~~~iPI~~dE~~-~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 286 (401)
T 2hzg_A 243 GRGARVRIAGGEAA-HNFHMAQHLMDYGRIGFIQIDCGRIGGLGP 286 (401)
T ss_dssp TTCCSSEEEECTTC-SSHHHHHHHHHHSCCSEEEECHHHHTSHHH
T ss_pred hhCCCCCEEecCCc-CCHHHHHHHHHCCCCCEEEeCcchhCCHHH
Confidence 9 899999999985 569999999999999999999999999974
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=308.59 Aligned_cols=265 Identities=17% Similarity=0.208 Sum_probs=181.2
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccc----hhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHH
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGG----KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIML 135 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g----~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~ 135 (394)
.+++|+|+|+ |++ |+||+..... +.|++ ++.+++...|++.++|.|+|+||.+++++|+.|.
T Consensus 51 ~~v~V~v~td~G~~----------G~GE~~~~~~---~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~l~ 117 (413)
T 1kcz_A 51 ESISVLLVLEDGQV----------AHGDCAAVQY---SGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFD 117 (413)
T ss_dssp CEEEEEEEETTSCE----------EEEEECCCTT---TTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHH
T ss_pred cEEEEEEEECCCCE----------EEEEEccccc---cccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence 5799999999 886 8888643210 00111 2345677778888999999999999999999995
Q ss_pred HhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCC--cccccceeeEEeecCCcCCCCCCcccceeeccC
Q 016156 136 EIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGT--KELVMPVPAFNVINGGSHAGNNLAMQEFMILPV 213 (394)
Q Consensus 136 ~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~--~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~ 213 (394)
... ..+++++.+|++|||+||||+.||.+|+|||+|||+..+. .++ |+|+|+.. |+.+ .. .
T Consensus 118 ~~~--~~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~--~vp~~~~~-g~~~----~~--------~ 180 (413)
T 1kcz_A 118 KMT--VNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEIN--AVPVFAQS-GDDR----YD--------N 180 (413)
T ss_dssp HCE--ETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCC--CCCEECCC-TTCT----TH--------H
T ss_pred hcc--cCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccC--CeeeeEec-Cccc----cC--------C
Confidence 421 1122456789999999999999999999999999932111 234 45556532 1110 00 0
Q ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH----HHHHHHHHHHH-cCCCCCcEEEEecc
Q 016156 214 GATSFAEALRMGSEV-YHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE----GLVLLTDAIEK-AGYTGKINIGMDVA 287 (394)
Q Consensus 214 ~~~~~~ea~~~~~~~-~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~----~l~~v~~Av~~-ag~~gdi~l~iD~a 287 (394)
++..++++.++..++ |+++| .| +|.. .....+ .++.+ +++++ +| .++.|++|+|
T Consensus 181 ~~~~~~~a~~~~~~G~~~~~K----iK-------vG~~------~~~~~~~~~~d~~~v-~avR~~~G--~~~~l~vDaN 240 (413)
T 1kcz_A 181 VDKMIIKEADVLPHALINNVE----EK-------LGLK------GEKLLEYVKWLRDRI-IKLRVRED--YAPIFHIDVY 240 (413)
T ss_dssp HHHHHHTTCSEEEECCCCCCC----CC-------CCTT------SHHHHHHHHHHHHHH-HHHCSSTT--CCCEEEEECT
T ss_pred HHHHHHHHHHHHHhcchhhee----ec-------cCCC------ccchhhHHHHHHHHH-HHHHHhcC--CCceEEEecC
Confidence 011233444444446 76666 34 3311 000122 33443 33322 33 3899999994
Q ss_pred cccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC--Cce-eeeCCCC----CCCHHHHHHHHhh-----cCC
Q 016156 288 ASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF--PIV-SIEDPFD----QDDWSSWASLQSS-----VDI 355 (394)
Q Consensus 288 a~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~--~i~-~iEdPl~----~~D~~~~~~L~~~-----~~i 355 (394)
+.|..-| .||.+++++++.+ ++++ +|. |||||++ ++|+++|++|+++ +++
T Consensus 241 --------~~~~~~~---------~~~~~~a~~~~~~-L~~~~~~i~~~iEqP~~~~~~~~d~~~~~~l~~~l~~~g~~i 302 (413)
T 1kcz_A 241 --------GTIGAAF---------DVDIKAMADYIQT-LAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDA 302 (413)
T ss_dssp --------THHHHHT---------TTCHHHHHHHHHH-HHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCE
T ss_pred --------CCccccc---------CCCHHHHHHHHHH-HHhhcCCcceEEecCCCCCCCcccHHHHHHHHHhhhcCCCCC
Confidence 4310000 0468899997666 7777 766 9999995 5699999999999 789
Q ss_pred eEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 356 QLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 356 ~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
||++||. ++++++++++++.+++|++|||++++||||+
T Consensus 303 pIa~dE~-~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~ 340 (413)
T 1kcz_A 303 ELVADEW-CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNN 340 (413)
T ss_dssp EEEECTT-CCSHHHHHHHHHTTCSSEEEECTGGGSSTHH
T ss_pred cEEeCCC-cCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 9999997 6889999999999999999999999999984
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=301.16 Aligned_cols=257 Identities=16% Similarity=0.196 Sum_probs=184.4
Q ss_pred ceEEEEEEEEEe--------cC--CC-----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQII--------DS--RG-----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~--~g-----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+- .+ .+ ++++.|+|+|+|++ |+||+. |
T Consensus 12 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~tdG~~----------G~GE~~-----------g------- 63 (392)
T 3p3b_A 12 WKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQT----------GYGSSI-----------H------- 63 (392)
T ss_dssp CBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEETTEE----------EEEECC-----------S-------
T ss_pred CeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEECCCE----------EEEecc-----------c-------
Confidence 999999998771 12 22 46799999998765 999862 1
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC----Cc-cc
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG----TK-EL 183 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g----~~-~~ 183 (394)
.|+ .++|.|+|+||.+++++| +++..+|++|||+||||+.||.+|+|||+||| | .. ++
T Consensus 64 -~i~-~l~p~l~G~d~~~~~~~~------------~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llG---g~~~~~~~~~ 126 (392)
T 3p3b_A 64 -MTP-EWAEDVIGRRLLDLFDDR------------GRLREAYRLQLEYPVLDWLGQRQGKPVYDLVS---GAHLETGASL 126 (392)
T ss_dssp -CCH-HHHHTTTTCBGGGGBCTT------------SCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHC-----------CE
T ss_pred -HHH-HHHHHhcCCCHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHhc---CccccccccC
Confidence 366 689999999999998886 12456899999999999999999999999999 6 54 56
Q ss_pred ccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHH
Q 016156 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREG 263 (394)
Q Consensus 184 ~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~ 263 (394)
++|++......|+.+..+.++++|. ..+++.++..+||+.+| .| +|..++|.++.++.+..
T Consensus 127 ~vp~~~s~~~~~~~~~~~~~~~~e~--------~~~~a~~~~~~Gf~~vK----ik-------~g~~~~~~~~~~~~~~~ 187 (392)
T 3p3b_A 127 VVPCYDTSLYFDDLHLADERAAVAL--------MQEEAMQGYAKGQRHFK----IK-------VGRGGRHMPLWEGTKRD 187 (392)
T ss_dssp EEEEEEEEECBTTTTCCSHHHHHHH--------HHHHHHHHHHTTCCCEE----EE-------CCHHHHTSCHHHHHHHH
T ss_pred CcceeEeecccCCCCcccccchHHH--------HHHHHHHHHHhCCCEEE----EC-------cCcCcccCCccccHHHH
Confidence 7776431011121111111122222 24566666677787777 34 33222222211122344
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCH
Q 016156 264 LVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDW 343 (394)
Q Consensus 264 l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~ 343 (394)
++.|+++.+.+| +|+.|++|+ |+.| +.+++++++.+ +++|+|.|||||++ +|+
T Consensus 188 ~e~v~avR~~~g--~d~~l~vDa--------n~~~---------------~~~~ai~~~~~-l~~~~i~~iE~P~~-~d~ 240 (392)
T 3p3b_A 188 IAIVRGISEVAG--PAGKIMIDA--------NNAY---------------NLNLTKEVLAA-LSDVNLYWLEEAFH-EDE 240 (392)
T ss_dssp HHHHHHHHHHHC--TTCCEEEEC--------TTCC---------------CHHHHHHHHHH-TTTSCEEEEECSSS-CCH
T ss_pred HHHHHHHHHHhC--CCCeEEEEC--------CCCC---------------CHHHHHHHHHH-HHhcCCCEEecCCc-ccH
Confidence 455443333344 489999999 5655 56788986554 89999999999999 999
Q ss_pred HHHHHHHhh-----cCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 344 SSWASLQSS-----VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 344 ~~~~~L~~~-----~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+++ +++||++|| ++++++++++++.+++|++++|++++ |||+
T Consensus 241 ~~~~~l~~~l~~~g~~iPIa~dE--~~~~~~~~~~i~~~~~d~v~ik~~~~-Git~ 293 (392)
T 3p3b_A 241 ALYEDLKEWLGQRGQNVLIADGE--GLASPHLIEWATRGRVDVLQYDIIWP-GFTH 293 (392)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECC--SSCCTTHHHHHHTTSCCEECCBTTTB-CHHH
T ss_pred HHHHHHHHhhccCCCCccEEecC--CCCHHHHHHHHHcCCCCEEEeCcccc-CHHH
Confidence 999999999 889999999 46799999999999999999999999 9974
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=290.12 Aligned_cols=235 Identities=18% Similarity=0.261 Sum_probs=174.4
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC-CCCCHHHHHHHHHHh
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV-DIRDQAEVDAIMLEI 137 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~-dp~~~e~Id~~l~~~ 137 (394)
+..+.|+| |+ |++ |+||+... .|.+++...+.+.+++.+ |+|+ ||.+++++|+.|.+.
T Consensus 26 ~~~~~V~v-td~G~~----------G~GE~~~~------~~~ge~~~~~~~~l~~~~---l~g~~d~~~~e~~~~~l~~~ 85 (338)
T 3ijl_A 26 TPDVQVEI-EYEGVT----------GYGEASMP------PYLGETVESVMNFLKKVN---LEQFSDPFQLEDILSYVDSL 85 (338)
T ss_dssp ECEEEEEE-EETTEE----------EEEEEECC------GGGSCCHHHHHHHHTTCC---CTTCCCTTCHHHHHHHHHHT
T ss_pred eeEEEEEE-EeCCcE----------EEEeeeCC------CCCCCCHHHHHHHHHHHH---hcCCCCccCHHHHHHHHHHh
Confidence 36799999 88 986 99998542 134556666666665432 8999 999999999999863
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCC
Q 016156 138 DGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATS 217 (394)
Q Consensus 138 ~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~ 217 (394)
. ....+|++|||+||||+.||.+|+|||+||| |. ++++|.+.|++ |.. +.+ ..
T Consensus 86 ~------~~~~~A~said~ALwDl~gk~~g~Pl~~LlG---g~-~~~v~~~~~~~---~~~-----~~e---------~~ 138 (338)
T 3ijl_A 86 S------PKDTAAKAAVDIALHDLVGKLLGAPWYKIWG---LN-KEKTPSTTFTI---GID-----TPD---------VV 138 (338)
T ss_dssp C------SCCHHHHHHHHHHHHHHHHHHHTSBHHHHTT---CC-GGGCCBBCCBC---CCC-----CHH---------HH
T ss_pred c------cCCHHHHHHHHHHHHHHHHHHcCCcHHHHhC---CC-CCCcceEEEEE---eCC-----CHH---------HH
Confidence 1 1335799999999999999999999999999 76 56777543321 110 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 218 ~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
.+++.+... +|+++| .|.| . +.+.+++++||+++ ++.|++|+ |+.
T Consensus 139 ~~~a~~~~~-g~~~~K----~Kvg-------~--------~~d~~~v~avR~~~-------~~~l~vDa--------N~~ 183 (338)
T 3ijl_A 139 RAKTKECAG-LFNILK----VKLG-------R--------DNDKEMIETIRSVT-------DLPIAVDA--------NQG 183 (338)
T ss_dssp HHHHHHHHT-TCSSEE----EECS-------S--------SCHHHHHHHHHTTC-------CCCEEEEC--------TTC
T ss_pred HHHHHHHHh-cccEEE----EecC-------c--------HHHHHHHHHHHhhc-------CCcEEEEC--------cCC
Confidence 333333322 577776 5533 1 12355666655553 36899999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
|+ +.++++++. +.+++|+|.|||||++++|+++|++|++++++||++||.. .+.+++++++ +
T Consensus 184 ~t--------------~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipIa~dE~~-~~~~~~~~~~--~ 245 (338)
T 3ijl_A 184 WK--------------DRQYALDMI-HWLKEKGIVMIEQPMPKEQLDDIAWVTQQSPLPVFADESL-QRLGDVAALK--G 245 (338)
T ss_dssp CC--------------CHHHHHHHH-HHHHHTTEEEEECCSCTTCHHHHHHHHHTCSSCEEESTTC-CSGGGTGGGB--T
T ss_pred CC--------------CHHHHHHHH-HHHhhCCCCEEECCCCCCcHHHHHHHHhcCCCCEEECCCC-CCHHHHHHHH--h
Confidence 52 267888764 4589999999999999999999999999999999999974 5688998875 7
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++|+|++++||||+
T Consensus 246 a~d~i~~k~~~~GGit~ 262 (338)
T 3ijl_A 246 AFTGINIKLMKCTGMRE 262 (338)
T ss_dssp TBSEEEECHHHHTSHHH
T ss_pred hCCEEEecccccCCHHH
Confidence 99999999999999974
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=292.33 Aligned_cols=255 Identities=14% Similarity=0.160 Sum_probs=180.8
Q ss_pred ceEEEEEEEEE-------ec---CCCC-----ceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHH
Q 016156 44 AKVKSVKARQI-------ID---SRGN-----PTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAV 108 (394)
Q Consensus 44 ~~I~~V~~r~v-------~~---~~g~-----~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~ 108 (394)
|+|++|+.+.+ +. +.|. .++.|+|+|||++ |+||+.. +
T Consensus 12 mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~tdG~~----------G~GE~~~--------~--------- 64 (392)
T 3v5c_A 12 WKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQT----------GYGSSIH--------M--------- 64 (392)
T ss_dssp CBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEETTEE----------EEEECCS--------C---------
T ss_pred cEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEcCCE----------EEEeecC--------c---------
Confidence 99999999888 22 2442 4689999999775 9999742 1
Q ss_pred HHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccc---c
Q 016156 109 KNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELV---M 185 (394)
Q Consensus 109 ~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~---i 185 (394)
.+.++|.|+|+||.++. . ..+.+..+|++|||+||||++||.+|+|||+||| |..+++ +
T Consensus 65 ---~~~l~~~liG~d~~~~~---------~---~~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLG---G~~r~~~~~v 126 (392)
T 3v5c_A 65 ---TPEWAEDVIGRRLLDLF---------D---DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVS---GAHLETGASL 126 (392)
T ss_dssp ---CHHHHHTTTTCBGGGGB---------C---TTSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHS---CCCSCCCCCE
T ss_pred ---HHHHHHHhCCCCHHHHH---------h---hccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CCCCcccccc
Confidence 13478999999997631 1 1234567899999999999999999999999999 776666 3
Q ss_pred ceeeEEeecCCcCC-CCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCC---CCCChH
Q 016156 186 PVPAFNVINGGSHA-GNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAP---NVQDNR 261 (394)
Q Consensus 186 P~p~~~~i~gG~~~-~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~---~~~~~~ 261 (394)
++|+|++.. |... ....+..+ .+...+++.+...+||+++| .|.| ..+.+.+ +.+.+.
T Consensus 127 ~v~~y~~~~-~~~~~~~~~~~~~------~e~~~~~a~~~~~~Gf~~~K----lKvg-------~~~~~~~~~~~~~~d~ 188 (392)
T 3v5c_A 127 VVPCYDTSL-YFDDLHLADERAA------VALMQEEAMQGYAKGQRHFK----IKVG-------RGGRHMPLWEGTKRDI 188 (392)
T ss_dssp EEEEEEEEE-CBTTTTCCCHHHH------HHHHHHHHHHHHHTTCCCEE----EECC-------TTTTTSCHHHHHHHHH
T ss_pred eEEEEEeec-ccccccccccccC------HHHHHHHHHHHHHCCCCEEE----ECCC-------CCCccccccccHHHHH
Confidence 345565421 2110 00000000 01124566666677888887 5533 2221111 122334
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 262 EGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 262 ~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
+++++||+++ | +++.|++|+ |+.| |.++++++. +.+++|++.|||||++ +
T Consensus 189 ~~v~avR~a~---g--~~~~l~vDa--------N~~w---------------~~~~A~~~~-~~L~~~~l~~iEeP~~-~ 238 (392)
T 3v5c_A 189 AIVRGISEVA---G--PAGKIMIDA--------NNAY---------------NLNLTKEVL-AALSDVNLYWLEAAFH-E 238 (392)
T ss_dssp HHHHHHHHHH---C--TTCCEEEEC--------TTCC---------------CHHHHHHHH-HHTTTSCCCEEECSSS-C
T ss_pred HHHHHHHHHc---C--CCCcEEeeC--------CCCc---------------CHHHHHHHH-HhcccCCCeEEeCCCC-c
Confidence 4555555554 4 589999999 5655 567888864 4589999999999998 7
Q ss_pred CHHHHHHHHhh-----cCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSS-----VDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~-----~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+++|++|+++ +++||+.||.. . .++++++++.+++|++|+|+++ ||||+
T Consensus 239 d~~~~~~l~~~~~~~~~~ipIa~gE~~-~-~~~~~~li~~~a~dii~~d~~~-GGite 293 (392)
T 3v5c_A 239 DEALYEDLKEWLGQRGQNVLIADGEGL-A-SPHLIEWATRGRVDVLQYDIIW-PGFTH 293 (392)
T ss_dssp CHHHHHHHHHHHHHHTCCCEEEECCSS-C-CTTHHHHHHTTSCCEECCBTTT-BCHHH
T ss_pred CHHHHHHHHHhhccCCCCCcEECCCcc-c-HHHHHHHHHcCCCcEEEeCCCC-CCHHH
Confidence 99999999986 57999999974 5 7899999999999999999999 99974
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=292.15 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=186.2
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.+ ++++.|+|+|+ |++ |+||+... +.++|. .+++...
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~----------G~GE~~~~---g~~~~~---~~~~~~~ 66 (389)
T 2oz8_A 3 LSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEV----------GLGFIQTL---FNPLPD---QQEIESV 66 (389)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEEEES---SSCCCC---HHHHHHH
T ss_pred CEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCE----------EEEEeccC---CCcccc---HHHHHHH
Confidence 88999998777 23443 35799999999 886 99998541 111222 3456667
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcC--CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCccccccee
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDG--TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVP 188 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~--~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p 188 (394)
|++.++|.|+|+||.++ +..++. ...++..+.+|++|||+||||+.||.+|+|||+||| |. ++++|
T Consensus 67 i~~~l~p~l~G~d~~~~------~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLG---g~-~~~vp-- 134 (389)
T 2oz8_A 67 FEHEVWPSLKGNRAIAL------VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLG---SR-RNRVK-- 134 (389)
T ss_dssp HHHHTHHHHTTSCHHHH------TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTT---CS-CSEEE--
T ss_pred HHHHHHHHHcCCCHHHH------HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcC---CC-CCceE--
Confidence 88889999999998776 222221 111112256899999999999999999999999999 64 45555
Q ss_pred eEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHH
Q 016156 189 AFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLT 268 (394)
Q Consensus 189 ~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~ 268 (394)
+|++ +|.+. .+.++ ..+++.++..+||+.+| .|.| . .+++.+.+.++.||
T Consensus 135 ~y~~--~~~~~---~~~~~---------~~~~a~~~~~~Gf~~vK----ik~g-------~-----~~~~~~~e~v~avR 184 (389)
T 2oz8_A 135 AYAS--GLDFH---LDDDA---------FVSLFSHAASIGYSAFK----IKVG-------H-----RDFDRDLRRLELLK 184 (389)
T ss_dssp EEEE--CCBTT---CCHHH---------HHHHHHHHHHTTCCEEE----EECC-------C-----SSHHHHHHHHHHHH
T ss_pred EEEe--CCCcC---CCHHH---------HHHHHHHHHHhCCCEEE----EccC-------C-----CCHHHHHHHHHHHH
Confidence 5664 33221 12233 35666777777888877 4533 1 12222344444444
Q ss_pred HHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc--CCceeeeCCCCCCCHHHH
Q 016156 269 DAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD--FPIVSIEDPFDQDDWSSW 346 (394)
Q Consensus 269 ~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~--~~i~~iEdPl~~~D~~~~ 346 (394)
+++ | +++.|++|+ |+.| +.+++++++.. +++ |++.|||||++++|+++|
T Consensus 185 ~a~---G--~~~~l~vDa--------n~~~---------------~~~~a~~~~~~-l~~~g~~i~~iEqP~~~~~~~~~ 235 (389)
T 2oz8_A 185 TCV---P--AGSKVMIDP--------NEAW---------------TSKEALTKLVA-IREAGHDLLWVEDPILRHDHDGL 235 (389)
T ss_dssp TTS---C--TTCEEEEEC--------TTCB---------------CHHHHHHHHHH-HHHTTCCCSEEESCBCTTCHHHH
T ss_pred Hhh---C--CCCeEEEEC--------CCCC---------------CHHHHHHHHHH-HHhcCCCceEEeCCCCCcCHHHH
Confidence 443 3 489999999 5655 46788886554 899 999999999999999999
Q ss_pred HHHHhhc-CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 347 ASLQSSV-DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 347 ~~L~~~~-~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++|++++ ++||++||.. ++++++++++.+++|++++| ||||+
T Consensus 236 ~~l~~~~~~iPIa~dE~~--~~~~~~~~i~~~~~d~v~ik----GGit~ 278 (389)
T 2oz8_A 236 RTLRHAVTWTQINSGEYL--DLQGKRLLLEAHAADILNVH----GQVTD 278 (389)
T ss_dssp HHHHHHCCSSEEEECTTC--CHHHHHHHHHTTCCSEEEEC----SCHHH
T ss_pred HHHHhhCCCCCEEeCCCC--CHHHHHHHHHcCCCCEEEEC----cCHHH
Confidence 9999999 8999999974 79999999999999999999 99974
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=277.01 Aligned_cols=239 Identities=12% Similarity=0.062 Sum_probs=181.7
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+- .+.+ +..+.|+|+|| |++ |+||+.... .++|.+++...+...
T Consensus 2 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~----------G~GE~~~~~---~~~~~~e~~~~~~~~ 68 (342)
T 2okt_A 2 LKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNA----------YFGECNAFQ---TDWYDHETIASVKHV 68 (342)
T ss_dssp BCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCE----------EEEECCCBS---STTSCSCBHHHHHHH
T ss_pred cEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCE----------EEEEecCCC---CCcCCCCCHHHHHHH
Confidence 899999988771 2333 24689999999 886 999985432 135777778788888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeE
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAF 190 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~ 190 (394)
|++.+ |.|+|+||.+.+++|+.|.+. .+ ..+|++|||+||||+.||.+|+ ++|+ |
T Consensus 69 l~~~~-~~l~G~d~~~~~~l~~~l~~~-----~g--~~~a~said~ALwDl~gk~~g~---------------~v~~--~ 123 (342)
T 2okt_A 69 IEQWF-EDNRNKSFETYEAALKLVDSL-----EN--TPAARATIVMALYQMFHVLPSF---------------SVAY--G 123 (342)
T ss_dssp HHHHH-HHHTTCCBCSHHHHHHTTGGG-----TT--CHHHHHHHHHHHHHTTCCCCCE---------------EEEC--E
T ss_pred HHHHH-HHHcCCCcCCHHHHHHHHHHh-----hc--ChHHHHHHHHHHHHHhhhhhCc---------------eEee--e
Confidence 88877 999999999999999999654 11 2579999999999999999876 3444 5
Q ss_pred EeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHH
Q 016156 191 NVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDA 270 (394)
Q Consensus 191 ~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~A 270 (394)
.+++|. + + ++..++..+||+++| .| +| .+ +.+++++||++
T Consensus 124 ~~~~g~----~--~--------------e~~~~~~~~G~~~~K----iK-------vg--------~~-d~~~v~avr~~ 163 (342)
T 2okt_A 124 ATASGL----S--N--------------KQLESLKATKPTRIK----LK-------WT--------PQ-IMHQIRVLREL 163 (342)
T ss_dssp EEESSC----C--H--------------HHHHHHHHHCCSEEE----EE-------CC--------TT-HHHHHHHHTTS
T ss_pred EEEecC----C--H--------------HHHHHHHHcCCcEEE----EE-------eC--------HH-HHHHHHHHHHh
Confidence 443221 0 0 122334455787777 44 22 23 35566666554
Q ss_pred HHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHH
Q 016156 271 IEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQ 350 (394)
Q Consensus 271 v~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~ 350 (394)
+ +++.|++|+ |+.|+ .+++ ++ .+.+++|+|.|||||++++|++++++
T Consensus 164 ~------~~~~l~vDa--------N~~~~---------------~~~A-~~-~~~l~~~~i~~iEqP~~~~d~~~~~~-- 210 (342)
T 2okt_A 164 D------FHFQLVIDA--------NESLD---------------RQDF-TQ-LQLLAREQVLYIEEPFKDISMLDEVA-- 210 (342)
T ss_dssp S------SCCEEEEEC--------TTCCC---------------GGGH-HH-HHHHGGGCEEEEECCCSSGGGGGGSC--
T ss_pred C------CCCeEEEEC--------CCCCC---------------HHHH-HH-HHHHhhCCCcEEECCCCCccHHHHHH--
Confidence 3 689999999 67664 4566 54 44589999999999999999999998
Q ss_pred hhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 351 SSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 351 ~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++++||++||. +.+.++++++++.+++|++|+|++++||||+
T Consensus 211 ~~~~ipIa~dEs-~~~~~~~~~~i~~~a~d~i~~k~~~~GGit~ 253 (342)
T 2okt_A 211 DGTIPPIALDEK-ATSLLDIINLIELYNVKVVVLKPFRLGGIDK 253 (342)
T ss_dssp TTSSCCEEESTT-CCCHHHHHHHHHHSCCCEEEECHHHHTSGGG
T ss_pred hcCCCCEEecCC-CCCHHHHHHHHHhCCCCEEEEChhhcCCHHH
Confidence 677899999997 5789999999999999999999999999985
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=268.84 Aligned_cols=227 Identities=17% Similarity=0.199 Sum_probs=166.7
Q ss_pred ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhc-CCCCCCHHHHHHHHHHhc
Q 016156 61 PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV-GVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 61 ~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~Li-G~dp~~~e~Id~~l~~~~ 138 (394)
+.+.|+|+ + |++ |+||+.... +| +++...+...++ .+.|.|+ |+| .+.+++.+
T Consensus 31 ~~~~V~v~-d~G~~----------G~GE~~~~~-----~~-g~~~~~~~~~i~-~~~~~l~~~~~---~~~~~~~~---- 85 (324)
T 1jpd_X 31 RVVVVELE-EEGIK----------GTGECTPYP-----RY-GESDASVMAQIM-SVVPQLEKGLT---REELQKIL---- 85 (324)
T ss_dssp EEEEEEEE-ETTEE----------EEEEECCCG-----GG-TCCHHHHHHHHH-TTHHHHHTTCC---HHHHHHHS----
T ss_pred eEEEEEEE-eCCce----------EEEEeeCCC-----Cc-CCCHHHHHHHHH-HHHHHHhcCCC---HHHHHHhC----
Confidence 56899998 6 886 999985421 23 344555555566 4778874 654 45564432
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
. ..+|++|||+||||+.||.+|+|||+||| |..+ +.|++.|++ ++| +.+ ...
T Consensus 86 --~-----~~~a~~aid~AlwDl~~k~~g~Pl~~llG---g~~~-~~~~~~~~~-~~~-------~~e---------~~~ 137 (324)
T 1jpd_X 86 --P-----AGAARNALDCALWDLAARRQQQSLADLIG---ITLP-ETVITAQTV-VIG-------TPD---------QMA 137 (324)
T ss_dssp --C-----SSHHHHHHHHHHHHHHHHTTTCCHHHHHT---CCCC-SEEEBCEEE-CSC-------CHH---------HHH
T ss_pred --c-----cHHHHHHHHHHHHHHHHHHhCCcHHHHhC---CCCC-CCcceeEEe-eCC-------CHH---------HHH
Confidence 1 13799999999999999999999999999 6442 456666764 222 111 235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.++..+||+++| .|.| . +.+.++++++|+++ +++.|++|+ |+.|
T Consensus 138 ~~a~~~~~~G~~~~K----iKvg-------~--------~~d~~~v~avr~~~------~~~~l~vDa--------N~~~ 184 (324)
T 1jpd_X 138 NSASTLWQAGAKLLK----VKLD-------N--------HLISERMVAIRTAV------PDATLIVDA--------NESW 184 (324)
T ss_dssp HHHHHHHHTTCSEEE----EECC-------S--------SCHHHHHHHHHHHC------TTSEEEEEC--------TTCC
T ss_pred HHHHHHHHcCCCEEE----EEeC-------C--------chHHHHHHHHHHhC------CCCEEEEEC--------cCCC
Confidence 677777778888888 4533 1 22355666665553 689999999 6766
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCC
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS 378 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a 378 (394)
+ .++++++ .+.+++|+|.|||||++++|+++|++++ .++||++||.. +++++++++++.
T Consensus 185 ~---------------~~~a~~~-~~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~ipIa~dE~~-~~~~~~~~~~~~-- 243 (324)
T 1jpd_X 185 R---------------AEGLAAR-CQLLADLGVAMLEQPLPAQDDAALENFI--HPLPICADESC-HTRSNLKALKGR-- 243 (324)
T ss_dssp C---------------STTHHHH-HHHHHHTTCCEEECCSCTTSCGGGGSSC--CSSCEEESTTC-SSGGGHHHHBTT--
T ss_pred C---------------HHHHHHH-HHHHHhCCCCEEECCCCCCCHHHHHhcc--CCCCEEEcCCC-CCHHHHHHHHhh--
Confidence 4 3567775 4458999999999999999999999885 67999999974 789999999854
Q ss_pred CcEEeeccccccccCC
Q 016156 379 CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 379 ~d~i~ik~~~~Ggit~ 394 (394)
+|++|+|++++||||+
T Consensus 244 ~~~i~ik~~~~GGit~ 259 (324)
T 1jpd_X 244 YEMVNIKLDKTGGLTE 259 (324)
T ss_dssp BSEEEECHHHHTSHHH
T ss_pred CCEEEEcchhhCcHHH
Confidence 9999999999999974
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-30 Score=250.56 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=161.1
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+..+.|+|+|| |++ |+||+... +.|.++++.+++..++ .|.|.| ||.+++.+|+.|
T Consensus 28 ~~~~lV~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~-~l~~~l---~~~~~~~~~~~~---- 84 (332)
T 2ozt_A 28 RSGIYLRLEDEQGQV----------GYGEIAPL-----PGWGSETLNADIALCQ-QLPGHL---TPEIMATIPEAL---- 84 (332)
T ss_dssp EEEEEEEEECTTSCE----------EEEEECCC-----TTSSSCCHHHHHHHHH-HSCSEE---CHHHHTTSCTTC----
T ss_pred eeEEEEEEEECCCCE----------EEEEecCC-----CCCCcccHHHHHHHHH-HhhccC---CHHHHHHHHHHh----
Confidence 45789999999 986 99998532 2466677777766553 466655 565555444322
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
..|++|||+||| +.|| || |..+ + |. |+... + .++...
T Consensus 85 ---------~~a~~aid~Al~-l~gk---------lg---g~~~-~-~~--y~~~~-~----------------~~e~~~ 121 (332)
T 2ozt_A 85 ---------PAAQFGFATAWQ-SVGR---------LP---YRVR-P-WP--ICALL-G----------------SGQAAL 121 (332)
T ss_dssp ---------HHHHHHHHHHHH-HTTT---------CS---CCCC-C-CC--BCEEE-C----------------TGGGHH
T ss_pred ---------HHHHHHHHHHHH-Hhcc---------cC---CCCC-C-cc--eEEec-C----------------ChHHHH
Confidence 258999999999 8888 45 4443 3 33 43211 1 112245
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+++.++..+||+.+| .|.| . .+.+.+.+++++||+++ | +++.|++|+ |+.|
T Consensus 122 ~~a~~~~~~G~~~~K----iKvg-------~-----~~~~~d~~~v~avr~~~---g--~~~~L~vDa--------N~~~ 172 (332)
T 2ozt_A 122 EQWQQSWQRGQTTFK----WKVG-------V-----MSPEEEQAILKALLAAL---P--PGAKLRLDA--------NGSW 172 (332)
T ss_dssp HHHHHHHHTTCCEEE----EECS-------S-----SCHHHHHHHHHHHHHHS---C--TTCEEEEEC--------TTCC
T ss_pred HHHHHHHHcCCcEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---C--CCCEEEEcc--------cCCC
Confidence 677777777888887 5533 1 12222344555555554 3 489999999 5655
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhcC---CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHh
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF---PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~---~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~ 375 (394)
|.+++++++.+ +++| +|.|||||++++|+++|++|++++++||++||. ++++++++++++
T Consensus 173 ---------------~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~~d~~~~~~l~~~~~ipIa~dEs-~~~~~~~~~~~~ 235 (332)
T 2ozt_A 173 ---------------DRATANRWFAW-LDRHGNGKIEYVEQPLPPDQWQALLSLAQTVTTAIALDES-VVSAAEVQRWVD 235 (332)
T ss_dssp ---------------CHHHHHHHHHH-HHHHCCTTEEEEECCSCTTCHHHHHHHHHHCSSCEEESTT-CCSHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHH-HHhhccCCcceeECCCCCCCHHHHHHHHHhCCCCEEeCCC-CCCHHHHHHHHH
Confidence 57788887655 8999 999999999999999999999999999999997 578999999999
Q ss_pred cCCCcEEeeccccccccC
Q 016156 376 KKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 376 ~~a~d~i~ik~~~~Ggit 393 (394)
.+++|++++|++++||+|
T Consensus 236 ~~a~~~i~ik~~~~GGi~ 253 (332)
T 2ozt_A 236 RGWPGFFVIKTALFGDPD 253 (332)
T ss_dssp TTCCSEEEECHHHHSCHH
T ss_pred hCCCCEEEEChhhhCCHH
Confidence 999999999999999986
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=237.77 Aligned_cols=229 Identities=17% Similarity=0.220 Sum_probs=157.7
Q ss_pred cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHH
Q 016156 56 DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEV 130 (394)
Q Consensus 56 ~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~I 130 (394)
.|+| ..+|.|+|+ | |++ ||||+..+ +.| +++.+.+.+.++....+.+.|.+.. ..
T Consensus 22 is~g~~t~~~~v~V~i~-d~G~~----------G~GE~~p~-----~~~-get~e~~~~~l~~~~~~~~~~~~~~---~~ 81 (329)
T 4gfi_A 22 ISRGTRTHADVVTCTIR-DGSFT----------GIGECVPY-----PRY-GESIEGVTADIEAMADRVAAGLTRQ---EL 81 (329)
T ss_dssp ETTEEEEEEEEEEEEEE-ETTEE----------EEEEECCC-----GGG-TCCHHHHHHHHHTTHHHHHHTCCHH---HH
T ss_pred ccCeEEEEeEEEEEEEE-ECCEE----------EEEeccCC-----CCC-CcCHHHHHHHHHHHhhhhccccchh---hH
Confidence 4555 357899995 6 886 99998543 234 5778888888888777777776432 22
Q ss_pred HHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceee
Q 016156 131 DAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMI 210 (394)
Q Consensus 131 d~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i 210 (394)
+..+ +. ..|++|||+||||+.||.+|+|||++|| |..++++|+ +.+++.+
T Consensus 82 ~~~~----~~-------~~a~aaid~AlwDl~gk~~g~pl~~llg---G~~~~~v~~--~~~~~~~-------------- 131 (329)
T 4gfi_A 82 QQVM----KP-------GAARNAVDCALWDLEAKMSGKRAAEQVL---GQPAQPLVT--AYTISLA-------------- 131 (329)
T ss_dssp HHHS----CS-------SHHHHHHHHHHHHHHHHHHSCCHHHHHH---SSCCCCEEC--CEEECCC--------------
T ss_pred Hhhc----cc-------HHHHHHHHHHHHHHHhhhcCCChhHHhC---CCCCCceee--eecccCC--------------
Confidence 2211 11 2699999999999999999999999999 777777765 3333221
Q ss_pred ccCCCCCHHHHHHHHH--HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEeccc
Q 016156 211 LPVGATSFAEALRMGS--EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAA 288 (394)
Q Consensus 211 ~p~~~~~~~ea~~~~~--~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa 288 (394)
..++...... .+|..+| .| +| ..++.+.++++++ +| +|+.|+||+
T Consensus 132 ------~~~~~~~~~~~~~~~~~~K----ik-------~g--------~~~d~~~v~~vr~----~g--~d~~l~vDa-- 178 (329)
T 4gfi_A 132 ------DPDTMAAKTAENAGRPLLK----IK-------TG--------TADDEARLRAVRA----AA--PEARIIIDA-- 178 (329)
T ss_dssp ------CHHHHHHHHHHTTTSSEEE----EE-------CC--------SSCCHHHHHHHHH----HC--TTSEEEEEC--
T ss_pred ------ChHHHHHHHHhhccccEEE----ec-------CC--------cccHHHHHHHHHH----hc--cCCeEEEEc--
Confidence 1112111111 1222222 22 22 1234666666554 44 699999999
Q ss_pred ccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHH
Q 016156 289 SEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPK 368 (394)
Q Consensus 289 ~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~ 368 (394)
|+.|+ .++++++ .+.+++|+|.|||||++++|.+++. +.+.++||+.||. +.+.+
T Consensus 179 ------N~~w~---------------~~~A~~~-~~~l~~~~i~~iEqP~~~~~~~~~~--~~~~~ipia~dEs-~~~~~ 233 (329)
T 4gfi_A 179 ------NEGWN---------------DDNIEYY-LKLAAELKISLIEQPLPAGKDAMLA--RIEHPVLICADES-VHSTE 233 (329)
T ss_dssp ------TTCCC---------------TTTHHHH-HHHHHHTTCCEEECCSCTTSCGGGG--GSCCSSEEEESTT-CCTGG
T ss_pred ------CCCCC---------------HHHHHHH-HHhhhhcCceEEEecCCCccHHHHH--HhcCCCCchhccC-CCCHH
Confidence 67675 4566764 4558999999999999999988764 4455699999997 46788
Q ss_pred HHHHHHhcCCCcEEeeccccccccCC
Q 016156 369 RIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 369 ~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++. .+++|++|+|++++||||+
T Consensus 234 d~~~~--~~a~d~i~~k~~~~GGit~ 257 (329)
T 4gfi_A 234 DLAGL--RDRYDAINIKLDKTGGLTE 257 (329)
T ss_dssp GSGGG--TTTCSEEEECHHHHTSHHH
T ss_pred HHHHH--hhccCeEEecCceeCCHHH
Confidence 88764 4789999999999999974
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=240.31 Aligned_cols=230 Identities=14% Similarity=0.157 Sum_probs=163.6
Q ss_pred eEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhH
Q 016156 45 KVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNIN 112 (394)
Q Consensus 45 ~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~ 112 (394)
+|++|+.+.+- .+.| +..+.|+|+|||++ ||||+... +.|.+++...+...++
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~tdG~~----------G~GE~~~~-----~~~~~e~~~~~~~~l~ 66 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGERE----------GWGEISPL-----PGFSQETWEEAQSVLL 66 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEETTEE----------EEEEECCC-----TTTCSSCHHHHHHHHH
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEECCeE----------EEEEecCC-----CCCCccCHHHHHHHHH
Confidence 57777777662 2333 35789999988776 99998542 2466777878888888
Q ss_pred HhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEe
Q 016156 113 DILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNV 192 (394)
Q Consensus 113 ~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~ 192 (394)
+.+.|.|+|+ .+ +.+ ..+|++|||+||||+.||..|+|+|+ ++|+ |
T Consensus 67 ~~~~~~l~g~--~~----------l~~-------~~~a~~aid~ALwDl~gk~~g~p~~~-----------~v~~--~-- 112 (322)
T 1r6w_A 67 AWVNNWLAGD--CE----------LPQ-------MPSVAFGVSCALAELTDTLPQAANYR-----------AAPL--C-- 112 (322)
T ss_dssp HHHHHHTTSC--CC----------CCS-------SHHHHHHHHHHHHHHTTCSCCCSCCC-----------CCCE--E--
T ss_pred HHHHHhhCCh--hh----------ccc-------ChHHHHHHHHHHHHhcCCCCCCCccc-----------eEEE--e--
Confidence 8899999998 22 111 24799999999999999999988752 3454 2
Q ss_pred ecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHH
Q 016156 193 INGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIE 272 (394)
Q Consensus 193 i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~ 272 (394)
.+ +.++ ..+++.+. +||+++| .|.| ..+.+.+.++++++|+++
T Consensus 113 --~~-------~~~~---------~~~~a~~~--~G~~~~K----iKvG------------~~~~~~d~~~v~avr~~~- 155 (322)
T 1r6w_A 113 --NG-------DPDD---------LILKLADM--PGEKVAK----VRVG------------LYEAVRDGMVVNLLLEAI- 155 (322)
T ss_dssp --CS-------CHHH---------HHHHHHTC--CSSEEEE----EECS------------SSCHHHHHHHHHHHHHHC-
T ss_pred --CC-------CHHH---------HHHHHHHh--CCCceEE----EEeC------------CCCHHHHHHHHHHHHHhC-
Confidence 11 0111 13333332 4677776 4533 112223344455554443
Q ss_pred HcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC---CceeeeCCCCCCCHHHHHHH
Q 016156 273 KAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF---PIVSIEDPFDQDDWSSWASL 349 (394)
Q Consensus 273 ~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~---~i~~iEdPl~~~D~~~~~~L 349 (394)
+++.|++|+ |+.| |.++++++ .+.+++| ++.|||||++ ++++|++|
T Consensus 156 -----~~~~l~vDa--------N~~~---------------~~~~A~~~-~~~l~~~~~~~i~~iEqP~~--~~~~~~~l 204 (322)
T 1r6w_A 156 -----PDLHLRLDA--------NRAW---------------TPLKGQQF-AKYVNPDYRDRIAFLEEPCK--TRDDSRAF 204 (322)
T ss_dssp -----TTEEEEEEC--------TTCB---------------CHHHHHHH-HHTSCTTTGGGEEEEECCBS--SHHHHHHH
T ss_pred -----CCCeEEEeC--------CCCC---------------CHHHHHHH-HHHhhhhccCCeeEEECCCC--ChHHHHHH
Confidence 689999999 5655 56788886 5558998 9999999997 48999999
Q ss_pred HhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 350 QSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 350 ~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++++++||++||... +. ++ +.++.+++|++|+|++++||||+
T Consensus 205 ~~~~~ipIa~dE~~~-~~-~~-~~~~~~a~d~i~ik~~~~GGit~ 246 (322)
T 1r6w_A 205 ARETGIAIAWDESLR-EP-DF-AFVAEEGVRAVVIKPTLTGSLEK 246 (322)
T ss_dssp HHHHCCCEEESGGGG-ST-TC-CCCCCTTEEEEEECHHHHCCHHH
T ss_pred HHhCCCCEEeCCCCC-Ch-hH-hhhhcCCCCEEEECchhcCCHHH
Confidence 999999999999864 44 46 66799999999999999999984
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=234.03 Aligned_cols=205 Identities=15% Similarity=0.127 Sum_probs=147.2
Q ss_pred CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 60 NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 60 ~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
+.++.|+|+|+ |++ |+||+... +.|.++++.. .|++ .| |
T Consensus 26 ~~~~~V~v~td~G~~----------G~GE~~~~-----~~~~~e~~~~---~l~~----~l--------------l---- 65 (330)
T 3caw_A 26 REGVLLKVEWNDGLY----------GFADLHPW-----PELGDLSLEE---QLSD----LR--------------M---- 65 (330)
T ss_dssp EEEEEEEEECTTSCE----------EEEEECCC-----GGGTCCCHHH---HHHH----HH--------------H----
T ss_pred eeEEEEEEEECCCCE----------EEEeecCC-----CCcCcccHHH---HHHH----HH--------------h----
Confidence 35789999999 886 99998532 2345555543 2333 22 1
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCH
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSF 218 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~ 218 (394)
+ ....+|++|||+||||+.||.+|+|||+ | | +++|++ .++++..+. +.+
T Consensus 66 ~-----~~~~~a~said~AlwDl~gk~~g~Pl~~--G---g---~~v~~~--~~~~~~~~~----~~~------------ 114 (330)
T 3caw_A 66 G-----RMTTQIEQSIWLARRDALLRKEKKHVFD--G---G---EKIKNN--YLLSHFQDL----KPG------------ 114 (330)
T ss_dssp T-----CCCHHHHHHHHHHHHHHHHHHTTCBTTT--T---S---CCCCBC--EEECTTSCC----CTT------------
T ss_pred c-----cchHHHHHHHHHHHHHHHHHHcCCcccc--C---C---CceEEE--EEecCCCCC----CHH------------
Confidence 1 1235799999999999999999999999 8 6 467764 433211000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCee
Q 016156 219 AEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNY 298 (394)
Q Consensus 219 ~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y 298 (394)
+..+...+||+++| .|.| . + .++.++.+ +++++ +++.|++|+ |+.|
T Consensus 115 -~~~~~~~~G~~~~K----iKvg-------~------~---~~~d~~~v-~avr~----~~~~l~vDa--------N~~~ 160 (330)
T 3caw_A 115 -FLDGLKNEGYNTVK----VKMG-------R------D---LQKEADML-THIAA----SGMRMRLDF--------NALG 160 (330)
T ss_dssp -HHHHHHHHTCCEEE----EECS-------S------C---HHHHHHHH-HHHHH----TTCEEEEEC--------TTCS
T ss_pred -HHHHHHHcCCcEEE----EecC-------C------C---HHHHHHHH-HHHhC----CCCeEEEEC--------CCCC
Confidence 11145566788888 5533 1 2 24455555 33343 479999999 5655
Q ss_pred eccCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCCCCC-CHHHHHHHHhhcCCeEEecCccccCHHHHHHHH
Q 016156 299 DLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPFDQD-DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI 374 (394)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl~~~-D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i 374 (394)
|.++++++.. .+++ |++.|||||++++ |++++ |+ ++ +||++||. +.+++++++
T Consensus 161 ---------------~~~~A~~~~~-~l~~~~~~~l~~iEqP~~~~~d~~~~--l~-~~-iPIa~dEs---~~~~~~~~i 217 (330)
T 3caw_A 161 ---------------SWQTFEKFMV-NLPLTVRPLIEYVEDPFPFDFHAWGE--AR-KL-AKIALDNQ---YDKVPWGKI 217 (330)
T ss_dssp ---------------CHHHHHHHHH-TSCTTTGGGEEEEECCSSCCHHHHHH--HT-TT-SCEEESTT---GGGCCTTTC
T ss_pred ---------------CHHHHHHHHH-HhhhhccCCceEEECCCCCCccHHHH--HH-hc-CcEEeCCC---CHHHHHHHH
Confidence 5678888654 4888 9999999999999 99999 88 88 99999997 689999999
Q ss_pred hcCCCcEEeeccccccccC
Q 016156 375 QKKSCNGLLLKVNHLFEIK 393 (394)
Q Consensus 375 ~~~a~d~i~ik~~~~Ggit 393 (394)
+.+++|++|+|++++ |+|
T Consensus 218 ~~~a~d~v~~k~~~~-Gi~ 235 (330)
T 3caw_A 218 ASAPFDVIVIKPAKT-DVD 235 (330)
T ss_dssp SSCSCSEEEECTTTS-CHH
T ss_pred HcCCCCEEEechhhc-cHH
Confidence 999999999999999 875
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-21 Score=189.85 Aligned_cols=162 Identities=17% Similarity=0.243 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHHhHhhcCChhHHHhhcccCCcccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHH-HH
Q 016156 149 NAILGVSLSVCRAGAGAKGVPLYKHIQELSGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMG-SE 227 (394)
Q Consensus 149 ~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~-~~ 227 (394)
.+++|||+||| |+| | ..++++|++ .+++.+ ..+++.+.. .+
T Consensus 50 ~~~aaid~Al~-------~~P-----g----~~r~~v~~~--~ti~~~--------------------~~e~~~~~~~~~ 91 (327)
T 2opj_A 50 WWAACYEAAEL-------GWP-----A----PVRDTVPVN--ATVPAV--------------------GPEEAARIVASS 91 (327)
T ss_dssp HHHHHHHHHHT-------CCC-----C----CSCSEEEBC--EEECSC--------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------CCC-----c----CCCCeeEEe--EEeCCC--------------------CHHHHHHHHHHC
Confidence 36899999997 456 4 346677774 333211 133444444 47
Q ss_pred HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCC
Q 016156 228 VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPN 307 (394)
Q Consensus 228 ~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~ 307 (394)
||+++| .|.| ..| .+.+.+.+++++||+++ | +++.|++|+ |+.|
T Consensus 92 G~~~~K----iKvg-------~~g---~~~~~d~~~v~avR~~~---G--~~~~L~vDa--------N~~w--------- 135 (327)
T 2opj_A 92 GCTTAK----VKVA-------ERG---QSEANDVARVEAVRDAL---G--PRGRVRIDV--------NGAW--------- 135 (327)
T ss_dssp CCSEEE----EECC-------C---------CHHHHHHHHHHHH---C--TTSEEEEEC--------TTCS---------
T ss_pred CCCEEE----EEeC-------CCC---CCHHHHHHHHHHHHHHh---C--CCCEEEEEC--------CCCC---------
Confidence 788887 5533 211 12344567788887776 3 489999999 5655
Q ss_pred CCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccc
Q 016156 308 DGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387 (394)
Q Consensus 308 ~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~ 387 (394)
|.++++++. +.+++|+|.|||||++ |+++|++|++++++||++||. +.+.++++++++.+++|++|+|++
T Consensus 136 ------~~~~A~~~~-~~L~~~~l~~iEqP~~--~~~~~~~l~~~~~iPIa~dEs-~~~~~~~~~~i~~~a~d~i~ik~~ 205 (327)
T 2opj_A 136 ------DVDTAVRMI-RLLDRFELEYVEQPCA--TVDELAEVRRRVSVPIAADES-IRRAEDPLRVRDAEAADVVVLKVQ 205 (327)
T ss_dssp ------CHHHHHHHH-HHHGGGCEEEEECCSS--SHHHHHHHHHHCSSCEEC------------CTTTTTCCSBEEECHH
T ss_pred ------CHHHHHHHH-HHHHhcCCcEEeCCCC--CHHHHHHHHhhCCCCEEcCCC-CCCHHHHHHHHHhCCCCEEEeCcc
Confidence 567888864 4589999999999997 589999999999999999997 567999999999999999999999
Q ss_pred cccccCC
Q 016156 388 HLFEIKS 394 (394)
Q Consensus 388 ~~Ggit~ 394 (394)
++||||+
T Consensus 206 ~~GGit~ 212 (327)
T 2opj_A 206 PLGGVRA 212 (327)
T ss_dssp HHTSHHH
T ss_pred ccCCHHH
Confidence 9999974
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0093 Score=58.23 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=64.8
Q ss_pred CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCC------------CCCCHHHH
Q 016156 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPF------------DQDDWSSW 346 (394)
Q Consensus 279 di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl------------~~~D~~~~ 346 (394)
|+.+++...+.++.+ + .++.++.+++ .+.+++.++.||+-.. +..+++..
T Consensus 219 d~pV~vRls~~~~~~--~---------------g~~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3hgj_A 219 ELPLFVRVSATDWGE--G---------------GWSLEDTLAF-ARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFA 280 (349)
T ss_dssp TSCEEEEEESCCCST--T---------------SCCHHHHHHH-HHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHH
T ss_pred CceEEEEeccccccC--C---------------CCCHHHHHHH-HHHHHHcCCCEEEEecCCcCcccccCCCccccHHHH
Confidence 777777775544332 1 3456777764 5568889999888542 22467788
Q ss_pred HHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 347 ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 347 ~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++++.+++||++... +++++++.++++.+.||.+.+
T Consensus 281 ~~ir~~~~iPVi~~Gg-i~t~e~a~~~l~~G~aD~V~i 317 (349)
T 3hgj_A 281 DAVRKRVGLRTGAVGL-ITTPEQAETLLQAGSADLVLL 317 (349)
T ss_dssp HHHHHHHCCEEEECSS-CCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHcCceEEEECC-CCCHHHHHHHHHCCCceEEEe
Confidence 9999999999988775 467999999999999999875
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.04 Score=53.61 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=65.9
Q ss_pred HHHHHHcCCCC-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCC---------
Q 016156 268 TDAIEKAGYTG-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDP--------- 337 (394)
Q Consensus 268 ~~Av~~ag~~g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdP--------- 337 (394)
.++|+++- | |+.+++-..+.++.+ + .++.++.+++ .+.+++. +.||+-.
T Consensus 200 v~aVr~av--g~d~pv~vRls~~~~~~--~---------------g~~~~~~~~~-a~~l~~~-vd~i~vs~g~~~~~~~ 258 (343)
T 3kru_A 200 IDEVRKNW--PENKPIFVRVSADDYME--G---------------GINIDMMVEY-INMIKDK-VDLIDVSSGGLLNVDI 258 (343)
T ss_dssp HHHHHHTS--CTTSCEEEEEECCCSST--T---------------SCCHHHHHHH-HHHHTTT-CSEEEEECCCSSCCCC
T ss_pred HHHHHhcC--CccCCeEEEeechhhhc--c---------------CccHHHHHHH-HHHhhcc-ccEEeccCCceEeeee
Confidence 34444432 4 777777775443322 1 2356777774 5568888 9888863
Q ss_pred -C-CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 338 -F-DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 338 -l-~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
. +..+++..+++++.+++||++... ++++++++++++.+.||.+.+
T Consensus 259 ~~~~~~~~~~~~~ir~~~~iPVi~~Gg-i~t~e~Ae~~l~~G~aD~V~i 306 (343)
T 3kru_A 259 NLYPGYQVKYAETIKKRCNIKTSAVGL-ITTQELAEEILSNERADLVAL 306 (343)
T ss_dssp CCCTTTTHHHHHHHHHHHTCEEEEESS-CCCHHHHHHHHHTTSCSEEEE
T ss_pred cccCceeehHHHHHHHhcCcccceeee-eeHHHHHHHHHhchhhHHHHH
Confidence 1 224667778899999999887664 467999999999999999875
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.21 Score=48.18 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHhhhcCCceeee--------C--CCCC-CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcE
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE--------D--PFDQ-DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE--------d--Pl~~-~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~ 381 (394)
++.++++++ .+.++++++.||+ + |..+ .+++..+++++.+++||++... +++++++.++++.+.||.
T Consensus 226 ~~~~~~~~~-a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Gg-i~s~~~a~~~l~~G~aD~ 303 (338)
T 1z41_A 226 LDIADHIGF-AKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGM-ITDGSMAEEILQNGRADL 303 (338)
T ss_dssp CCHHHHHHH-HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSS-CCSHHHHHHHHHTTSCSE
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHcCCceE
Confidence 356677764 5568889988888 2 3333 4678888999999999987775 467999999999999999
Q ss_pred Eee
Q 016156 382 LLL 384 (394)
Q Consensus 382 i~i 384 (394)
+.+
T Consensus 304 V~i 306 (338)
T 1z41_A 304 IFI 306 (338)
T ss_dssp EEE
T ss_pred Eee
Confidence 876
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.059 Score=53.16 Aligned_cols=68 Identities=6% Similarity=-0.051 Sum_probs=53.2
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeCCCCC-----CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIEDPFDQ-----DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEdPl~~-----~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
++.++++++ .+.++++++.||+.+... ...+ .+++++.+++||++.... +++++.++++.+.||.+.+
T Consensus 263 ~~~~~~~~l-a~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~iPvi~~G~i--t~~~a~~~l~~g~aD~V~i 335 (379)
T 3aty_A 263 NPEALTKHL-CKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYSGVKISNLRY--DFEEADQQIREGKVDAVAF 335 (379)
T ss_dssp CHHHHHHHH-HHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCCSCEEEESSC--CHHHHHHHHHTTSCSEEEE
T ss_pred CCHHHHHHH-HHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCCCcEEEECCC--CHHHHHHHHHcCCCeEEEe
Confidence 355677764 566899999999987521 1125 889999999998877764 6999999999999999876
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.036 Score=54.60 Aligned_cols=68 Identities=4% Similarity=-0.080 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCC------C--CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFD------Q--DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~------~--~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.+++++ +.+.++++++.||+-+-. + .+++..+++++.+++||++.... ++++++++++.+.||++.+
T Consensus 254 ~~~~~~~-la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i--~~~~a~~~l~~g~aD~V~~ 329 (376)
T 1icp_A 254 PTALGLY-MVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY--DREDGNRALIEDRADLVAY 329 (376)
T ss_dssp HHHHHHH-HHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC--CHHHHHHHHHTTSCSEEEE
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHCCCCcEEee
Confidence 4556666 466699999999987543 1 23344578999999998877654 5999999999999999876
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.13 Score=50.31 Aligned_cols=70 Identities=6% Similarity=-0.070 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeCCC------------CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCc
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIEDPF------------DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCN 380 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEdPl------------~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d 380 (394)
++.++.+++ .+.+++.++.||+-.. +..+++..+++++.+++||++... ++++++++++++.+.||
T Consensus 243 ~~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Gg-I~s~e~a~~~l~~G~aD 320 (363)
T 3l5l_A 243 QTLEESIEL-ARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWG-FGTPQLAEAALQANQLD 320 (363)
T ss_dssp HHHHHHHHH-HHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSS-TTSHHHHHHHHHTTSCS
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCC-CCCHHHHHHHHHCCCcc
Confidence 456777764 5568889988887321 124677778999999999887775 46799999999999999
Q ss_pred EEee
Q 016156 381 GLLL 384 (394)
Q Consensus 381 ~i~i 384 (394)
.+.+
T Consensus 321 ~V~i 324 (363)
T 3l5l_A 321 LVSV 324 (363)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9875
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=95.30 E-value=0.098 Score=51.25 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCC------CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFD------QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~------~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.++++++ .+.++++++.||+-... +.+++..+++++.+++||++.... ++++++++++.+.||++.+
T Consensus 249 ~~~~~~~~-a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggi--t~~~a~~~l~~g~aD~V~~ 322 (364)
T 1vyr_A 249 EEADALYL-IEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAY--TAEKAEDLIGKGLIDAVAF 322 (364)
T ss_dssp HHHHHHHH-HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC--CHHHHHHHHHTTSCSEEEE
T ss_pred CHHHHHHH-HHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCc--CHHHHHHHHHCCCccEEEE
Confidence 45666664 56689999999987652 346677788999999998877654 6999999999999999876
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.13 Score=54.14 Aligned_cols=70 Identities=10% Similarity=0.089 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHhhhcCCceeee-------CCCC--------CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE-------DPFD--------QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE-------dPl~--------~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
++.++++++ .+.++++++.||+ .+++ ...++..+++++.+++||++... ++++++++++++.+
T Consensus 225 ~~~~~~~~~-a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Gg-i~~~~~a~~~l~~g 302 (671)
T 1ps9_A 225 GTFAETVEL-AQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNR-INDPQVADDILSRG 302 (671)
T ss_dssp CCHHHHHHH-HHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSS-CCSHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHcC
Confidence 456777764 5568889999885 3332 13457778899999999988775 45799999999999
Q ss_pred CCcEEee
Q 016156 378 SCNGLLL 384 (394)
Q Consensus 378 a~d~i~i 384 (394)
.+|.+.+
T Consensus 303 ~aD~V~~ 309 (671)
T 1ps9_A 303 DADMVSM 309 (671)
T ss_dssp SCSEEEE
T ss_pred CCCEEEe
Confidence 9999875
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.5 Score=46.14 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCCCC------CCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDPFD------QDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdPl~------~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+.+++++ +.+.++++++.||+-.-. ...++..+++++.+++||++.... +++++.++++.+.||.+.+
T Consensus 248 ~~~~~~~-~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi--~~~~a~~~l~~g~aD~V~i 321 (365)
T 2gou_A 248 PILTYTA-AAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRY--NAEKAEQAINDGLADMIGF 321 (365)
T ss_dssp HHHHHHH-HHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC--CHHHHHHHHHTTSCSEEEC
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCC--CHHHHHHHHHCCCcceehh
Confidence 4566666 456688999888886432 123566688999999998866654 6999999999999999876
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.37 Score=47.38 Aligned_cols=69 Identities=3% Similarity=-0.132 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeCCCC------C-CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIEDPFD------Q-DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEdPl~------~-~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
++.++.++ +.+.++++++.||+-.-. + .+++..+++++.+++||++.... +++++.++++.+.||.+.+
T Consensus 252 ~~~~~~~~-la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi--~~~~a~~~l~~g~aD~V~i 327 (377)
T 2r14_A 252 EPEAMAFY-LAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNY--DAGRAQARLDDNTADAVAF 327 (377)
T ss_dssp CHHHHHHH-HHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSC--CHHHHHHHHHTTSCSEEEE
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHCCCceEEee
Confidence 34567776 456689999888875321 1 24555678999999998866654 4999999999999999876
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.38 Score=47.00 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 315 AQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 315 ~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.++.++ +.+.+++.++.||+-.-.....+-.+++++.+++||++.-. + +++++++.++.+.||.+.+
T Consensus 241 ~~~~~~-la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Gg-i-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 241 AETFTY-VARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNER-F-DKASANAALASGKADAVAF 307 (362)
T ss_dssp HHHHHH-HHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEESS-C-CHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHH-HHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEeCC-C-CHHHHHHHHHcCCccEEEE
Confidence 345565 46668999999988544322113457788888888775554 3 6999999999999999865
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.42 Score=46.67 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 315 AQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 315 ~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.++.++ +.+.+++.++.||+-.-.....+..+++++.+++||++... + +++.++++++.+.||.+.+
T Consensus 249 ~~~~~~-la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Gg-i-t~e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 249 AATFGH-VARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVNEN-F-TLDSAQAALDAGQADAVAW 315 (361)
T ss_dssp HHHHHH-HHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEESS-C-CHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHH-HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEeCC-C-CHHHHHHHHHcCCccEEEE
Confidence 345565 46668999999998654332223457888888888775554 3 6999999999999999865
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=2.8 Score=40.38 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhhcCCceeeeCC----------C-CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEE
Q 016156 314 SAQSLGDLYKEFVRDFPIVSIEDP----------F-DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGL 382 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~i~~iEdP----------l-~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i 382 (394)
+.++.+++ .+.+++.++.+|+=- . +..+++-.+++++.+++||++.-. ++++++++++++.+.||.+
T Consensus 227 ~~~~~~~l-a~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~Gg-I~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 227 TAKDYVPY-AKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGL-ITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp CGGGHHHH-HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESS-CCCHHHHHHHHHTTSCSEE
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCC-CCCHHHHHHHHHCCCeeEE
Confidence 45566654 555888887777621 1 123567778899999999876543 4679999999999999998
Q ss_pred ee
Q 016156 383 LL 384 (394)
Q Consensus 383 ~i 384 (394)
.+
T Consensus 305 ~i 306 (340)
T 3gr7_A 305 FL 306 (340)
T ss_dssp EE
T ss_pred Ee
Confidence 76
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.7 Score=45.76 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHhhhcCC------ceeeeC--------CCCC--------CCHHHHHHHHhhcCCeEEecCccccCHHHHH
Q 016156 314 SAQSLGDLYKEFVRDFP------IVSIED--------PFDQ--------DDWSSWASLQSSVDIQLVGDDLLVTNPKRIA 371 (394)
Q Consensus 314 t~~e~i~~~~~~l~~~~------i~~iEd--------Pl~~--------~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~ 371 (394)
+.++.+++ .+.+++.+ +.||+- +..+ .+++-.+++++.+++||++.... ++++++
T Consensus 258 ~~~~~~~l-a~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i--~~~~a~ 334 (402)
T 2hsa_B 258 PLSLGLAV-VERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY--TRELGI 334 (402)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC--CHHHHH
T ss_pred CHHHHHHH-HHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC--CHHHHH
Confidence 45566654 55688887 777663 1122 13344567888999998766553 699999
Q ss_pred HHHhcCCCcEEee
Q 016156 372 EAIQKKSCNGLLL 384 (394)
Q Consensus 372 ~~i~~~a~d~i~i 384 (394)
++++.+.||.+.+
T Consensus 335 ~~l~~g~aD~V~i 347 (402)
T 2hsa_B 335 EAVAQGDADLVSY 347 (402)
T ss_dssp HHHHTTSCSEEEE
T ss_pred HHHHCCCCceeee
Confidence 9999999999876
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=84.96 E-value=2.8 Score=44.51 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=34.6
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
+++--+++++.+++||++--. +++++++.++++.+.||.+.+
T Consensus 279 ~~~~~~~i~~~~~~pvi~~G~-i~~~~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 279 TIPWVKLVKQVSKKPVLGVGR-YTDPEKMIEIVTKGYADIIGC 320 (729)
T ss_dssp THHHHHHHHTTCSSCEECCSC-CCCHHHHHHHHHTTSCSBEEE
T ss_pred cHHHHHHHHHHCCCEEEEeCC-CCCHHHHHHHHHCCCCCEEEe
Confidence 456667899999999887665 467999999999999999875
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=82.17 E-value=3.5 Score=37.32 Aligned_cols=93 Identities=9% Similarity=0.021 Sum_probs=56.7
Q ss_pred CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceee--eCC-----CCCCCHHHHHHHHh
Q 016156 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSI--EDP-----FDQDDWSSWASLQS 351 (394)
Q Consensus 279 di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~i--EdP-----l~~~D~~~~~~L~~ 351 (394)
.|-+.||+-- ++|+|.+...+- ......++.++++ .+++.++.+| -|. -...+++..+++++
T Consensus 8 ~iv~~iD~~~-----~~g~~~v~~~~~--~~~~~~~~~~~a~----~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~ 76 (247)
T 3tdn_A 8 AVVVAIDAKR-----VDGEFMVFTYSG--KKNTGILLRDWVV----EVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP 76 (247)
T ss_dssp TCEEEEEEEE-----ETTEEEEEETTT--TEEEEEEHHHHHH----HHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGG
T ss_pred eEEEEEEEEe-----cCCcEEEEEcCC--eecCCCCHHHHHH----HHHHcCCCEEEEEecCcccCCCcccHHHHHHHHH
Confidence 5889999931 146676541100 0001223444333 3555665444 221 23457888999999
Q ss_pred hcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 352 SVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 352 ~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+++||..+-- +.++++++++++.+ +|.+.+
T Consensus 77 ~~~ipvi~~Gg-i~~~~~~~~~l~~G-ad~V~i 107 (247)
T 3tdn_A 77 LTTLPIIASGG-AGKMEHFLEAFLRG-ADKVSI 107 (247)
T ss_dssp GCCSCEEEESC-CCSHHHHHHHHHTT-CSEECC
T ss_pred hCCCCEEEeCC-CCCHHHHHHHHHcC-CCeeeh
Confidence 99999765543 46799999999887 787765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 394 | ||||
| d2al1a1 | 295 | c.1.11.1 (A:142-436) Enolase {Baker's yeast (Sacch | 1e-78 | |
| d1w6ta1 | 296 | c.1.11.1 (A:138-433) Enolase {Streptococcus pneumo | 4e-75 | |
| d2akza1 | 294 | c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens) | 9e-74 | |
| d2ptza1 | 291 | c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [ | 5e-70 | |
| d2fyma1 | 292 | c.1.11.1 (A:140-431) Enolase {Escherichia coli [Ta | 2e-67 | |
| d2al1a2 | 141 | d.54.1.1 (A:1-141) Enolase {Baker's yeast (Sacchar | 3e-54 | |
| d2ptza2 | 139 | d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [Ta | 3e-53 | |
| d2fyma2 | 139 | d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxI | 5e-53 | |
| d1w6ta2 | 137 | d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoni | 4e-52 | |
| d2akza2 | 139 | d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), | 7e-52 | |
| d1pdza2 | 139 | d.54.1.1 (A:1-139) Enolase {European lobster (Homa | 2e-47 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 5e-23 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 5e-16 |
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 242 bits (618), Expect = 1e-78
Identities = 121/204 (59%), Positives = 151/204 (74%), Gaps = 1/204 (0%)
Query: 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQD 243
V+PVP NV+NGGSHAG LA+QEFMI P GA +FAEALR+GSEVYH LK + K++YG
Sbjct: 4 VLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGAS 63
Query: 244 ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFK 303
A NVGDEGG APN+Q E L L+ DAI+ AG+ GK+ IG+D A+SEFF KDG YDL+FK
Sbjct: 64 AGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFF-KDGKYDLDFK 122
Query: 304 KQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLL 363
+D + L+ L DLY ++ +PIVSIEDPF +DDW +W+ + IQ+V DDL
Sbjct: 123 NPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLT 182
Query: 364 VTNPKRIAEAIQKKSCNGLLLKVN 387
VTNPKRIA AI+KK+ + LLLKVN
Sbjct: 183 VTNPKRIATAIEKKAADALLLKVN 206
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 233 bits (595), Expect = 4e-75
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 7/208 (3%)
Query: 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQD 243
V+P P N+INGGSH+ +A QEFMILPVGA +F EALR G+E++H LK I+K + +
Sbjct: 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLE- 62
Query: 244 ACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTG--KINIGMDVAASEFFTKDGNYDLN 301
VGDEGGFAP + +G+ + AIE AGY + +G D A+SEF+ +
Sbjct: 63 -TAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFY-DKERKVYD 120
Query: 302 FKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLVG 359
+ K +GA V ++ D +E V +PI++IED D++DW W +L + +QLVG
Sbjct: 121 YTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQLVG 180
Query: 360 DDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
DD VTN +A IQ+ + N +L+KVN
Sbjct: 181 DDFFVTNTDYLARGIQEGAANSILIKVN 208
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 229 bits (586), Expect = 9e-74
Identities = 139/206 (67%), Positives = 174/206 (84%), Gaps = 2/206 (0%)
Query: 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYG 241
+L++PVPAFNVINGGSHAGN LAMQEFMILPVGA SF +A+R+G+EVYH LKG+IK+KYG
Sbjct: 2 DLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYG 61
Query: 242 QDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLN 301
+DA NVGDEGGFAPN+ +N E L L+ +AI+KAGYT KI IGMDVAASEF+ +DG YDL+
Sbjct: 62 KDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFY-RDGKYDLD 120
Query: 302 FKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDD 361
FK P D + ++ LG LY++FVRD+P+VSIEDPFDQDDW++W+ ++V IQ+VGDD
Sbjct: 121 FKS-PTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDD 179
Query: 362 LLVTNPKRIAEAIQKKSCNGLLLKVN 387
L VTNPKRI A+++K+CN LLLKVN
Sbjct: 180 LTVTNPKRIERAVEEKACNCLLLKVN 205
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Score = 220 bits (561), Expect = 5e-70
Identities = 123/210 (58%), Positives = 153/210 (72%), Gaps = 6/210 (2%)
Query: 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY 240
KEL +PVP FNVINGG HAGN L QEFMI PV ATSF+EALRMGSEVYH L+GIIK+KY
Sbjct: 1 KELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKY 60
Query: 241 GQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEF-FTKDGNYD 299
GQDA NVGDEGGFAP ++D E L +L +AIE+AG+ GK I MD AASE K Y+
Sbjct: 61 GQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYN 120
Query: 300 LNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQL 357
L FK ++A+ L + Y ++ D+PIVSIEDP+DQDD++ +A + ++ Q+
Sbjct: 121 LTFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQI 177
Query: 358 VGDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
VGDDL VTN +RI AI+KK+CN LLLK+N
Sbjct: 178 VGDDLTVTNTERIKMAIEKKACNSLLLKIN 207
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Score = 213 bits (544), Expect = 2e-67
Identities = 85/209 (40%), Positives = 118/209 (56%), Gaps = 8/209 (3%)
Query: 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKY 240
+ MPVP N+INGG HA NN+ +QEFMI PVGA + EA+RMGSEV+H L ++K K
Sbjct: 2 GKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG 61
Query: 241 GQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDL 300
VGDEGG+APN+ N E L ++ +A++ AGY +G D+ + Y
Sbjct: 62 MN--TAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYE----LGKDITLAMDCAASEFYKD 115
Query: 301 NFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV--DIQLV 358
+G +++ +E + +PIVSIED D+ DW +A + IQLV
Sbjct: 116 GKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLV 175
Query: 359 GDDLLVTNPKRIAEAIQKKSCNGLLLKVN 387
GDDL VTN K + E I+K N +L+K N
Sbjct: 176 GDDLFVTNTKILKEGIEKGIANSILIKFN 204
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 173 bits (441), Expect = 3e-54
Identities = 85/139 (61%), Positives = 108/139 (77%), Gaps = 3/139 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
V V AR + DSRGNPTVEV+L T+ +FRS VPSGASTG++EALE+RDGDKS + GKGV
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L+AVKN+ND++ P V +D++DQ VD ++ +DGT NKSK+GANAILGVSL+ RA
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 163 AGAKGVPLYKHIQELSGTK 181
A K VPLYKH+ +LS +K
Sbjct: 122 AAEKNVPLYKHLADLSKSK 140
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Score = 171 bits (434), Expect = 3e-53
Identities = 82/137 (59%), Positives = 109/137 (79%), Gaps = 1/137 (0%)
Query: 45 KVKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKG 103
++ V R+++DSRGNPTVEV++ T+ +FRSAVPSGASTG+YEA ELRDGDK Y GKG
Sbjct: 3 TIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKG 62
Query: 104 VLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGA 163
L AVKN+N+++GP L+G D Q E+D +ML +DGTPNK K+GANAILG S+++ +A A
Sbjct: 63 CLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAA 122
Query: 164 GAKGVPLYKHIQELSGT 180
AKGVPLY+++ L+GT
Sbjct: 123 AAKGVPLYRYLASLAGT 139
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Score = 170 bits (433), Expect = 5e-53
Identities = 78/139 (56%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDD--LFRSAVPSGASTGIYEALELRDGDKSVYGG 101
+K+ + R+IIDSRGNPTVE ++ + + +A PSGASTG EALELRDGDKS + G
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
KGV AV +N + L+G D +DQA +D IM+++DGT NKSK GANAIL VSL+ +A
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 162 GAGAKGVPLYKHIQELSGT 180
A AKG+PLY+HI EL+GT
Sbjct: 121 AAAAKGMPLYEHIAELNGT 139
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 168 bits (427), Expect = 4e-52
Identities = 71/133 (53%), Positives = 97/133 (72%), Gaps = 2/133 (1%)
Query: 44 AKVKSVKARQIIDSRGNPTVEVDLITDDLF--RSAVPSGASTGIYEALELRDGDKSVYGG 101
+ + V AR+++DSRGNPT+EV++ T+ R VPSGASTG +EA+ELRDGDKS YGG
Sbjct: 2 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 61
Query: 102 KGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRA 161
G AV N+N+I+ ++G D+RDQ +D M+ +DGTPNK K+GANAILGVS++V RA
Sbjct: 62 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 121
Query: 162 GAGAKGVPLYKHI 174
A +PLY ++
Sbjct: 122 AADYLEIPLYSYL 134
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Score = 167 bits (425), Expect = 7e-52
Identities = 87/137 (63%), Positives = 110/137 (80%), Gaps = 3/137 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
++ + AR+I+DSRGNPTVEVDL T LFR+AVPSGASTGIYEALELRDGDK Y GKGV
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
L AV +IN + P L+ G+ + +Q ++D +MLE+DGT NKSK GANAILGVSL+VC+AG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 163 AGAKGVPLYKHIQELSG 179
A + +PLY+HI +L+G
Sbjct: 122 AAERELPLYRHIAQLAG 138
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Score = 156 bits (396), Expect = 2e-47
Identities = 83/136 (61%), Positives = 105/136 (77%), Gaps = 3/136 (2%)
Query: 46 VKSVKARQIIDSRGNPTVEVDLITDD-LFRSAVPSGASTGIYEALELRDGDKSVYGGKGV 104
+ V AR I DSRGNPTVEVDL T LFR+AVPSGASTG++EALE+RDGDKS Y GK V
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 105 LNAVKNINDILGPKLV--GVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAG 162
NAVKN+ND++ P+++ G+ + Q E D M ++DGT NKS +GANAILGVSL++C+AG
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAG 121
Query: 163 AGAKGVPLYKHIQELS 178
A G+PLY+HI L+
Sbjct: 122 AAELGIPLYRHIANLA 137
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 94.6 bits (235), Expect = 5e-23
Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 56/216 (25%)
Query: 185 MPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDA 244
+P F G + + MIL G AL + ++
Sbjct: 5 EAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE----------- 41
Query: 245 CNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKK 304
+G +G E + L+D I + + + + + Y
Sbjct: 42 EKLGFKGEKLR------EYVRWLSDRILSLRSSPRYHPTLHI---------DVYGTIGLI 86
Query: 305 QPNDGAHVLSAQSLGDLYKEFVRDFP--IVSIEDPFD----QDDWSSWASLQSSVD---- 354
D + ++ + IE P D D ++ +
Sbjct: 87 FDMD------PVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGS 140
Query: 355 -IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHL 389
+++V D+ T + I + SC+ + +K L
Sbjct: 141 GVKIVADEWCNT-YQDIVDFTDAGSCHMVQIKTPDL 175
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 75.0 bits (184), Expect = 5e-16
Identities = 30/194 (15%), Positives = 54/194 (27%), Gaps = 32/194 (16%)
Query: 207 EFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQ--DACNVGDEGGFAPNVQDNREGL 264
E +PV A S G + Y + +I ++ A E + E +
Sbjct: 3 EINAVPVFAQS-------GDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYV 55
Query: 265 VLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKE 324
L D I K + + D+ + E
Sbjct: 56 KWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIK------------AMADYIQTLAE 103
Query: 325 FVRDFPIVSIEDPFDQDDWSSWASLQSSV---------DIQLVGDDLLVTNPKRIAEAIQ 375
+ F + IE P D +D + D +LV D+ + +
Sbjct: 104 AAKPFHL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADE-WCNTVEDVKFFTD 161
Query: 376 KKSCNGLLLKVNHL 389
K+ + + +K L
Sbjct: 162 NKAGHMVQIKTPDL 175
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 394 | |||
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 100.0 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 100.0 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 100.0 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 100.0 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 100.0 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 100.0 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 99.98 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.84 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.83 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.83 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 99.82 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.82 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.82 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 99.81 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.81 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.8 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.8 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.8 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.8 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.8 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 99.79 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.79 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.78 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 99.78 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.78 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.77 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.77 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.74 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.74 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.74 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.71 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.69 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.69 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.68 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.67 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.67 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.67 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.65 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.65 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.65 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.62 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.38 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.32 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 97.8 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 96.38 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 96.22 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 93.71 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 84.19 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 82.85 |
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-48 Score=371.31 Aligned_cols=212 Identities=57% Similarity=0.962 Sum_probs=202.4
Q ss_pred ccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChH
Q 016156 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNR 261 (394)
Q Consensus 182 ~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~ 261 (394)
+.+||+|++|+||||+|+++++++||||++|.+..+++++++++.++|+++|+.|+.|+|...+.+||+|||.|++++.+
T Consensus 2 p~~lP~P~~NIinGG~HA~~~ldiQEfmIiP~ga~sf~eal~~~~eVy~~lk~il~~k~~~~~~~vgDEGgfaP~~~~~e 81 (295)
T d2al1a1 2 PYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAE 81 (295)
T ss_dssp TEEECEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHH
T ss_pred CCCCCchheeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCccccCcccCccccccCccccH
Confidence 36899999999999999999999999999999999999999999999999999999998877788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCC
Q 016156 262 EGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQD 341 (394)
Q Consensus 262 ~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~ 341 (394)
++|+++.+||+++|++++|.|++|||||+||+ +++|++.+++++...+..+|++|++++|.+|+++|||.+|||||+++
T Consensus 82 ~aL~ll~~Ai~~aGy~~~i~i~lD~AAsefy~-~~kY~~~~~~~~~~~~~~~s~~elid~y~~li~~YPIisIEDp~~e~ 160 (295)
T d2al1a1 82 EALDLIVDAIKAAGHDGKVKIGLDCASSEFFK-DGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAED 160 (295)
T ss_dssp HHHHHHHHHHHHHTCTTTCEEEEECCGGGGEE-TTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTT
T ss_pred HHHHHHHHHHHhcCCCcceEEEeehhhHHHhh-CCcccccccccccCCccccchHHHHHHHHHHHHhCCEEEecCCcCcc
Confidence 99999999999999977999999999999998 79999988877665567889999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 342 DWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 342 D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|+++|++|++++++.|+||++++||+.+++++|++++||.++||+||+|||||
T Consensus 161 D~~gw~~lt~~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK~NQiGTvtE 213 (295)
T d2al1a1 161 DWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSE 213 (295)
T ss_dssp CHHHHHHHHTTCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred chHHHHHHhhccCceeecchhhcccchhhhcchhhhcccceeecccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999985
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=100.00 E-value=2.2e-47 Score=363.83 Aligned_cols=210 Identities=65% Similarity=1.140 Sum_probs=198.1
Q ss_pred cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH
Q 016156 183 LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (394)
Q Consensus 183 ~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~ 262 (394)
..||+|++|+||||+|+++++++||||++|.++.+++++++++.++|+.+|+.|+.|+|...+.+||+|||.|++++.++
T Consensus 3 ~~lP~P~~NiinGG~HA~~~ldiQEFmIiP~ga~sf~eal~~~~eV~~~lk~~L~~k~~~~~~~vgDEGgfaP~~~~~e~ 82 (294)
T d2akza1 3 LILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSE 82 (294)
T ss_dssp CCBCEEEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHH
T ss_pred cCCCccceeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccCCCceeeeccchHH
Confidence 47999999999999999999999999999999999999999999999999999998888778899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC
Q 016156 263 GLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD 342 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D 342 (394)
+|+++.+|++.+|+++||.|+|||||||||+ +++|.+.++++.. ....+|++|++++|.+|+++|||.+|||||+++|
T Consensus 83 ~l~ll~~Ai~~ag~~~~i~ialD~AASefy~-~~kY~~~~~~~~~-~~~~~t~delid~y~~l~~kYPIisIEDP~~E~D 160 (294)
T d2akza1 83 ALELVKEAIDKAGYTEKIVIGMDVAASEFYR-DGKYDLDFKSPTD-PSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDD 160 (294)
T ss_dssp HHHHHHHHHHHHTCTTTCEEEEECCGGGGEE-TTEECTTTTSSCC-GGGCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC
T ss_pred HHHHHHHHHhccCCCceEEEEechhhhhhhh-cCcceeeecccCC-ccceecHHHHHHHHHHHhcccCeEEEeCCCcccc
Confidence 9999999999999966999999999999998 7899987654421 2357899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 343 WSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 343 ~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+++++++|+||++++||+.+++++|+.++||.++||+||+|||||
T Consensus 161 ~~gw~~lt~~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK~NQiGTltE 212 (294)
T d2akza1 161 WAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTE 212 (294)
T ss_dssp HHHHHHHHHTCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred hhhHHHHHHhcCcEEEccccccccHHHHHHHHhcCcCccceeccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999985
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3e-47 Score=362.75 Aligned_cols=210 Identities=59% Similarity=0.938 Sum_probs=197.2
Q ss_pred ccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChH
Q 016156 182 ELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNR 261 (394)
Q Consensus 182 ~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~ 261 (394)
..+||+|++|+||||+|+++++++|||||+|.+..+++|+++++.++|+.+|+.|+.|++.....+||+|||.|++++.+
T Consensus 2 ~~~lP~P~~NIinGG~HA~~~ldiQEFmIiP~g~~sf~eal~~~~eV~~~lk~~L~~k~~~~~~~vgDEGGfaP~~~~~e 81 (291)
T d2ptza1 2 ELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDIN 81 (291)
T ss_dssp CCEECEEEEEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTT
T ss_pred CCCCCcceeeEecccccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccH
Confidence 35899999999999999999999999999999999999999999999999999999887777788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecccccccc-cCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 262 EGLVLLTDAIEKAGYTGKINIGMDVAASEFFT-KDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 262 ~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~-~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
++|+++.+|++.+||++++.|+||||||+||+ ++++|++.++.+ .+..+|++|++++|.+|+++|||.+|||||++
T Consensus 82 ~aL~ll~eAi~~ag~~~~~~i~lD~AAsef~~~~~~~Y~l~~~~~---~~~~ls~~elid~y~~l~~~YPIisIEDp~~e 158 (291)
T d2ptza1 82 EPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSP---EPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQ 158 (291)
T ss_dssp THHHHHHHHHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSS---SCCEECHHHHHHHHHHHHHHSCEEEEECCSCT
T ss_pred HHHHHHHHHHHHcCCCCCeeEEeeechHhhhhccccccccccccc---CcchhhHHHHHHHHHHHhhccceeEecCCccc
Confidence 99999999999999988999999999999998 458899875432 23478999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|+++++ |+|+|||+++||+++++++|+.++||.++||+||+|||||
T Consensus 159 ~D~~gw~~lt~~~g~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLIK~NQiGTvtE 214 (291)
T d2ptza1 159 DDFAGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISE 214 (291)
T ss_dssp TCHHHHHHHHHHTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHH
T ss_pred cchhHHHHhhhccCceEEEecCcccccchHHHhhccccCCccceEecchhhhhHHH
Confidence 99999999999997 9999999999999999999999999999999999999985
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=1e-46 Score=359.16 Aligned_cols=207 Identities=45% Similarity=0.808 Sum_probs=188.2
Q ss_pred ccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHH
Q 016156 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREG 263 (394)
Q Consensus 184 ~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~ 263 (394)
.||+|++|+||||+|+++++++||||++|.+..+++|+++++.++|+++|+.|+.+. ..+.+||+|||.|++++.+++
T Consensus 4 ~lP~P~~NiinGG~HA~~~l~~QEfmIiP~~~~sf~eal~~~~eV~~~lk~~l~~~~--~~t~vgDEGGfaP~~~~~e~a 81 (296)
T d1w6ta1 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRG--LETAVGDEGGFAPRFEGTEDG 81 (296)
T ss_dssp EECEECEEEEECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTT--CCCCBCTTSCBCCCCSSHHHH
T ss_pred cCCcchhheecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CCCcccccccccccCcChHHH
Confidence 699999999999999999999999999999999999999999999999999998763 357899999999999999999
Q ss_pred HHHHHHHHHHcCCC-C-CcEEEEeccccccccc-CCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 264 LVLLTDAIEKAGYT-G-KINIGMDVAASEFFTK-DGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 264 l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~-ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
|+++.+||+++||+ | ||.|++|||||+||++ ++.|.+. +.....+..+|++|++++|.+|+++|||.+|||||++
T Consensus 82 L~ll~eAI~~aGy~~G~di~ialD~AAsefy~~~~~~Y~~~--~~e~~~~~~~s~~elid~y~~l~~~YPIisIEDP~~e 159 (296)
T d1w6ta1 82 VETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDYT--KFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDE 159 (296)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEEECCGGGGBC--CCCEETH--HHHCTTCCEECHHHHHHHHHHHHHHSCEEEEESCSCT
T ss_pred HHHHHHHHHHcCCCCCCceeeehhhhhhhhhcCCCceeeec--cccCCcccccCHHHHHHHHHHHHhcCCeEEEecCccc
Confidence 99999999999998 6 8999999999999982 3445432 1111123467999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|+++++ |+|+|||+++||+++++++|+.++||.++||+||+|||||
T Consensus 160 ~D~~gw~~lt~~lg~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~NQiGTvte 215 (296)
T d1w6ta1 160 NDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTE 215 (296)
T ss_dssp TCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHH
T ss_pred ccHHHHHHHHHHhCCceEEEcCcccccChhHHHhhhhhcccccceeccchhHHHHH
Confidence 99999999999996 9999999999999999999999999999999999999985
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-46 Score=353.52 Aligned_cols=204 Identities=47% Similarity=0.807 Sum_probs=191.2
Q ss_pred cccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHH
Q 016156 183 LVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNRE 262 (394)
Q Consensus 183 ~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~ 262 (394)
.+||+|++|+||||+|+++++++|||||+|.+..+++|+++++.++|+++|+.|+.|. ..+.+||+|||.|++++.++
T Consensus 4 ~~lP~P~~NIinGG~HA~~~l~~QEfmIiP~ga~sf~eal~~~~evy~~lk~iL~~k~--~~t~vgDEGGfap~~~~~ee 81 (292)
T d2fyma1 4 YSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG--MNTAVGDEGGYAPNLGSNAE 81 (292)
T ss_dssp CCCCEECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTT--CCCCBCTTSCBCCCCSSHHH
T ss_pred cCCCcceeeeecCcccCCCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCcccCccceecccCccHH
Confidence 5899999999999999999999999999999999999999999999999999998883 35679999999999999999
Q ss_pred HHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 263 GLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 263 ~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
+|+++.+||+++||+ | ||.|++|||||+||+ +++|.+.+. .+..+|++|++++|.+|+++|||.+|||||++
T Consensus 82 aL~ll~eAi~~aGy~~G~di~ialD~AAsefy~-~~~y~~~~~-----~~~~~t~~eli~~y~~l~~~yPIisIEDP~~e 155 (292)
T d2fyma1 82 ALAVIAEAVKAAGYELGKDITLAMDCAASEFYK-DGKYVLAGE-----GNKAFTSEEFTHFLEELTKQYPIVSIEDGLDE 155 (292)
T ss_dssp HHHHHHHHHHHTTCCBTTTBEEEEECCGGGGEE-TTEEEEGGG-----TTEEECHHHHHHHHHHHHHHSCEEEEESCSCT
T ss_pred HHHHHHHHHHHcCCCCCceEEEeeeechhhhhc-cccceeccC-----CCccccHHHHHHHHHHHHhcCceEEEeCCccc
Confidence 999999999999998 6 899999999999998 677776533 23457999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcC--CeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVD--IQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~--i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+|+++|++|+++++ |+|+|||+++||+++++++|+.++||.++||+||+|||||
T Consensus 156 dD~~gw~~lt~~~g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK~NQiGTvTe 211 (292)
T d2fyma1 156 SDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTE 211 (292)
T ss_dssp TCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHH
T ss_pred ccHHHHHHHHHhcCCcEEEeCCchhccChHHHHhhhhcCCccceeechhhhhHHHH
Confidence 99999999999996 9999999999999999999999999999999999999985
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=3.5e-35 Score=248.52 Aligned_cols=131 Identities=55% Similarity=0.887 Sum_probs=125.8
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
+|++|++|+|+||+|+|||+|+|+|+ |.+ ++++|||+|||.+||.++||+++.+|.|+++..|+++|++.|+|.|+|+
T Consensus 3 ~I~~v~~r~IlDSRG~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~in~~i~~~L~G~ 82 (137)
T d1w6ta2 3 IITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDNVNNIIAEAIIGY 82 (137)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTS
T ss_pred ceeEEEEEEEEcCCCCEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHHHHHHhHHHHcCC
Confidence 69999999999999999999999999 988 9999999999999999999999889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
|+.||++||+.|.++|+|.+++.+|+||+.|||+|+|+++|+..++|||+|||
T Consensus 83 d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yig 135 (137)
T d1w6ta2 83 DVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLG 135 (137)
T ss_dssp BTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=4.7e-35 Score=249.21 Aligned_cols=136 Identities=60% Similarity=1.002 Sum_probs=132.1
Q ss_pred ceEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 44 AKVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 44 ~~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
|+|++|++|+|+||||+|||+|+|+|+ |.+++++|||+|||.+|+.+++|+++.+|.|+++..|+..|++.|+|.|+|+
T Consensus 2 M~I~~i~~r~IlDSRG~PTvevev~~~~g~~ra~~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~Av~nin~~I~~~L~g~ 81 (139)
T d2ptza2 2 MTIQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVKNVNEVIGPALIGR 81 (139)
T ss_dssp TSCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHHHHHHTHHHHHTTC
T ss_pred CeEEEEEEEEEEcCCCCeEEEEEEEECCCceeEeccccccccchhhhhcCCCcccccccchHHHHHHHhhhccchhhccc
Confidence 899999999999999999999999999 9889999999999999999999999888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
|+.||++||+.|..+|++.+++.+|.||+.|+|+|+|++.|+..++|||+||+.+.|
T Consensus 82 ~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~~~g 138 (139)
T d2ptza2 82 DELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAG 138 (139)
T ss_dssp CTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999996544
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-34 Score=242.55 Aligned_cols=135 Identities=57% Similarity=0.856 Sum_probs=130.7
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCC
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGV 122 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~ 122 (394)
+|++|++|+|+||+|+|||+|+|+++ |.+ ++++|||+|||.+|+.++||+++.+|.|+++..++..|++.|+|.|+|+
T Consensus 2 kI~~v~~r~IlDSRG~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~in~~i~~~Lig~ 81 (139)
T d2fyma2 2 KIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGK 81 (139)
T ss_dssp BEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHHHHTHHHHHHTTS
T ss_pred eeEEEEEEEEEcCCCCeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHHHHHHHHHHHhCC
Confidence 79999999999999999999999999 987 9999999999999999999998889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
++.||++||+.|..+|++.+++.+|.||+.|+|+|+++++|+..++|||+||+++.|
T Consensus 82 ~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~~~g 138 (139)
T d2fyma2 82 DAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNG 138 (139)
T ss_dssp BTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred chhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHhhcC
Confidence 999999999999999999999999999999999999999999999999999996544
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-33 Score=237.83 Aligned_cols=134 Identities=63% Similarity=0.976 Sum_probs=129.3
Q ss_pred EEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhc--CC
Q 016156 46 VKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV--GV 122 (394)
Q Consensus 46 I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~Li--G~ 122 (394)
|++|++|+|+||||+|||+|+|+|+ |.+++++|||+|||.+||.++||+++.+|.|+++..++..|++.|.|.|+ |.
T Consensus 2 I~~v~ar~IlDSRG~PTvev~v~~~~g~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~nin~~i~~~Li~~g~ 81 (141)
T d2al1a2 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANI 81 (141)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTC
T ss_pred cCEEEEEEEECCCCCcEEEEEEEECCCeEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHHHHHhHHHHhhcCC
Confidence 8899999999999999999999999 97899999999999999999999998899999999999999999999998 88
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 123 DIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 123 dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
|+.||++||+.|..+|+|.+++.+|+||+.|||+|+|+++|+..++|||+||+++.+
T Consensus 82 ~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~~~~ 138 (141)
T d2al1a2 82 DVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSK 138 (141)
T ss_dssp CTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999996543
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=100.00 E-value=3.6e-33 Score=237.69 Aligned_cols=135 Identities=64% Similarity=1.045 Sum_probs=130.1
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhc--C
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV--G 121 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~Li--G 121 (394)
+|++|++|+|+||+|+|||+|+|+|+ |.+++++|||+|||.+|+.+++|++..+|.|+++..+++.|++.|.|.|+ |
T Consensus 1 tI~~i~~r~IlDSRG~PTvevev~~~~g~~~a~~PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~g 80 (139)
T d2akza2 1 SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSG 80 (139)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHC
T ss_pred CcCEEEEEEEEcCCCCeEEEEEEEECCCeEEEecccccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhcC
Confidence 58999999999999999999999999 98899999999999999999999998899999999999999999999998 9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccC
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSG 179 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g 179 (394)
+++.||++||+.|..+|++.+++.+|.||+.|||+|+|++.|+..++|||+||+++.|
T Consensus 81 ~~~~dQ~~iD~~L~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~l~g 138 (139)
T d2akza2 81 LSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAG 138 (139)
T ss_dssp CCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHhhhC
Confidence 9999999999999999999999999999999999999999999999999999996544
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=99.98 E-value=8.2e-33 Score=234.20 Aligned_cols=133 Identities=62% Similarity=1.006 Sum_probs=128.2
Q ss_pred eEEEEEEEEEecCCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhc--C
Q 016156 45 KVKSVKARQIIDSRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLV--G 121 (394)
Q Consensus 45 ~I~~V~~r~v~~~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~Li--G 121 (394)
+|++|++|+|+||||+|||+|+|+++ |.+++++|||+|||.+||.++||+++.+|.|+++..++..|++.++|.|+ |
T Consensus 1 tI~~i~ar~IlDSRG~PTVev~v~~~~~~~ra~~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~g 80 (139)
T d1pdza2 1 SITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKSG 80 (139)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEETTEEEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHT
T ss_pred CccEEEEEEEEcCCCCcEEEEEEEECCCeEEEecccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhcC
Confidence 48999999999999999999999999 88899999999999999999999998899999999999999999999998 6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcc
Q 016156 122 VDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQEL 177 (394)
Q Consensus 122 ~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~ 177 (394)
.|+.+|++||+.|..+|++.+++.+|.|++.|||+|+|+++|+..|+|||+||+++
T Consensus 81 ~~~~dq~~iD~~Li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~~ 136 (139)
T d1pdza2 81 LKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIANL 136 (139)
T ss_dssp CCTTCHHHHHHHHHHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccchhhhHHHHHhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999943
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.84 E-value=9.1e-22 Score=183.72 Aligned_cols=139 Identities=23% Similarity=0.227 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
..+.+.+...+||+++| .|.|..+. .+.++++.+.+++++||+++ | +++.|+||+ |+
T Consensus 27 ~~~~a~~~~~~Gf~~~K----ik~g~~~~------~~~~~~~~d~~~v~avR~~~---G--~~~~l~vDa--------N~ 83 (255)
T d1rvka1 27 YGRFAETLVKRGYKGIK----LHTWMPPV------SWAPDVKMDLKACAAVREAV---G--PDIRLMIDA--------FH 83 (255)
T ss_dssp HHHHHHHHHHHTCSEEE----EECCCTTS------TTCCCHHHHHHHHHHHHHHH---C--TTSEEEEEC--------CT
T ss_pred HHHHHHHHHHcCCCEEE----EcCCCCcc------ccccCHHHHHHHHHHHHHHc---C--Cccceeccc--------cc
Confidence 35666677777888888 55441110 11234444455566666655 4 489999999 55
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.| |.++++++ .+.+++++|.|||||++++|++++++|++++++||++||...+..+.++++++.
T Consensus 84 ~~---------------~~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~ 147 (255)
T d1rvka1 84 WY---------------SRTDALAL-GRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKA 147 (255)
T ss_dssp TC---------------CHHHHHHH-HHHHHTTTCSEEECCSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHT
T ss_pred cc---------------ccchhhhh-hhhcccchhhhhcCCcccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhh
Confidence 44 57788886 455899999999999999999999999999999999999754423467889999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+|++++||||+
T Consensus 148 ~~~dii~~d~~~~GGit~ 165 (255)
T d1rvka1 148 GACDILRTGVNDVGGITP 165 (255)
T ss_dssp TCCSEEEECHHHHTSHHH
T ss_pred chhhhccccccccccchH
Confidence 999999999999999974
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.83 E-value=6.6e-22 Score=183.83 Aligned_cols=131 Identities=16% Similarity=0.239 Sum_probs=102.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 218 FAEALRMGSE-VYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 218 ~~ea~~~~~~-~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
++++.++..+ ||+.+| .|.| ..+.+.+.++++.+|+++ | +++.|++|+ |+
T Consensus 21 ~~~~~~~~~~~Gf~~~K----iKvG------------~~~~~~D~~~v~~ir~~~---g--~~~~l~vDa--------N~ 71 (244)
T d2chra1 21 LDSAVEMIERRRHNRFK----VKLG------------FRSPQDDLIHMEALSNSL---G--SKAYLRVDV--------NQ 71 (244)
T ss_dssp HHHHHHHHHTTSCCEEE----EECS------------SSCHHHHHHHHHHHHHHT---T--TTSEEEEEC--------TT
T ss_pred HHHHHHHHHhCCCCEEE----EEcC------------CCCHHHHHHHHHHHHHhc---C--CCceEEEeC--------CC
Confidence 5566565553 787777 4533 122233344455554444 3 489999999 56
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.| +.++++++. +.++++++.|+|||++++|++++++|++++++||++||. .+++++++++++.
T Consensus 72 ~~---------------~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~~E~-~~~~~~~~~~i~~ 134 (244)
T d2chra1 72 AW---------------DEQVASVYI-PELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADES-LSTLASAFDLARD 134 (244)
T ss_dssp CC---------------CTHHHHHHH-HHHHTTTCCEEECCSCSSCHHHHHHHHHHCSSEEEESSS-CCSHHHHHHHHTT
T ss_pred Cc---------------chHHHHHHH-HHHhhhhHHHHhhhhhhccchhhhhhccceeeeeeeccc-ccccchhhhhhhc
Confidence 56 456888764 458999999999999999999999999999999999997 5779999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++|++++||+|+
T Consensus 135 ~~~d~v~~d~~~~GGit~ 152 (244)
T d2chra1 135 RSVDVFSLKLCNMGGVSA 152 (244)
T ss_dssp TCCSEECCCHHHHTSHHH
T ss_pred ceeEEEeeccccccchHH
Confidence 999999999999999974
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=1.6e-21 Score=182.41 Aligned_cols=131 Identities=16% Similarity=0.283 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 218 ~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
.+++.+...+||+++| +|.| ..+++.+.++++.+|+++ | +++.|++|+ |+.
T Consensus 26 ~~~~~~~~~~Gf~~~K----ikvg------------~~~~~~di~~v~avr~~~---G--~~~~l~vDa--------n~~ 76 (256)
T d2gdqa1 26 VSNVEAQLKKGFEQIK----VKIG------------GTSFKEDVRHINALQHTA---G--SSITMILDA--------NQS 76 (256)
T ss_dssp HHHHHHHHTTTCCEEE----EECS------------SSCHHHHHHHHHHHHHHH---C--TTSEEEEEC--------TTC
T ss_pred HHHHHHHHHCCCCEEE----EECC------------CCCHHHHHHHHHHHHHHc---C--CCeEEeecc--------ccC
Confidence 3444444445676666 4422 123333455555555555 4 489999999 565
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcC-CceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF-PIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~-~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
| +.++++++. +.++++ +|.|||||++++|++++++|++++++||++||. .++.++++++++.
T Consensus 77 ~---------------~~~~A~~~~-~~l~~~~~i~~~EeP~~~~d~~~~~~l~~~~~ipIa~gE~-~~~~~~~~~~i~~ 139 (256)
T d2gdqa1 77 Y---------------DAAAAFKWE-RYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAGGEN-MKGPAQYVPLLSQ 139 (256)
T ss_dssp C---------------CHHHHHTTH-HHHTTCSCEEEEECCSCSSCHHHHHHHHTTCSSCEEECTT-CCSHHHHHHHHHT
T ss_pred C---------------CHHHHHHHH-HHHhhcCceeEeccccccchHHHHHHHhhcccceeecCcc-ccchhhHHHHHHh
Confidence 5 567888754 458886 699999999999999999999999999999997 4689999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++|+|++++||||+
T Consensus 140 ~a~di~~~d~~~~GGit~ 157 (256)
T d2gdqa1 140 RCLDIIQPDVMHVNGIDE 157 (256)
T ss_dssp TCCSEECCCTTTTTHHHH
T ss_pred hcceeeeccccccccHHH
Confidence 999999999999999974
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=1.5e-21 Score=181.10 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=106.1
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccC
Q 016156 217 SFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKD 295 (394)
Q Consensus 217 ~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~n 295 (394)
.++++++... +||+.+| .|.| ..+++.+.++++.+|+++ | +++.|++|+ |
T Consensus 20 ~~~~~~~~~~~~G~~~~K----iKvG------------~~~~~~Di~~i~~ir~~~---g--~~~~l~vDa--------N 70 (242)
T d1muca1 20 DIAEARHMLEIRRHRVFK----LKIG------------ANPVEQDLKHVVTIKREL---G--DSASVRVDV--------N 70 (242)
T ss_dssp HHHHHHHHHHTTSCSEEE----EECS------------SSCHHHHHHHHHHHHHHH---G--GGSEEEEEC--------T
T ss_pred HHHHHHHHHHHCCCCEEE----EEEC------------CCCHHHHHHHHHHHHHHh---C--CCCEEEEec--------C
Confidence 4667777664 5888887 5533 123333455566666665 3 489999999 5
Q ss_pred CeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHh
Q 016156 296 GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 296 g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~ 375 (394)
+.| |.++++++. +.+++++|.|||||++++|++++++|++++++||++||.. .++++++++++
T Consensus 71 ~~~---------------~~~~A~~~~-~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~~E~~-~~~~~~~~~i~ 133 (242)
T d1muca1 71 QYW---------------DESQAIRAC-QVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESI-ESVEDAFSLAA 133 (242)
T ss_dssp TCB---------------CHHHHHHHH-HHHHHTTCCCEECCBCTTCHHHHHHHHHHCSSCEEESTTC-SSHHHHHHHHH
T ss_pred CCC---------------cHHHHHHHH-HHhhhhhHHHhhcchhhhhhhhhhhhhhhhhheeeccccc-ccccchhhhhh
Confidence 655 567888865 4589999999999999999999999999999999999974 67999999999
Q ss_pred cCCCcEEeeccccccccCC
Q 016156 376 KKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 376 ~~a~d~i~ik~~~~Ggit~ 394 (394)
.+++|++++|++++||||+
T Consensus 134 ~~~~d~~~~d~~~~GGit~ 152 (242)
T d1muca1 134 DGAASIFALKIAKNGGPRA 152 (242)
T ss_dssp HTCCSEEEECHHHHTSHHH
T ss_pred cccccccccccccchhHHH
Confidence 9999999999999999974
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.82 E-value=3.4e-21 Score=179.21 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=112.7
Q ss_pred cccccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCCh
Q 016156 181 KELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDN 260 (394)
Q Consensus 181 ~~~~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~ 260 (394)
.++++|+| ++ ||.+.+++ +.++ ..+++.+...+||+++| .|.| ..+++.+
T Consensus 2 ~~~kv~vY--as--~g~~~~~~-~~~~---------~~~~~~~~~~~Gf~~~K----ikvg------------~~~~~~d 51 (247)
T d1tzza1 2 ANPRVFVY--AA--GGYYYPGK-GLSM---------LRGEMRGYLDRGYNVVK----MKIG------------GAPIEED 51 (247)
T ss_dssp CCCEEEEE--EE--CCCC-----CHHH---------HHHHHHHHHTTTCSEEE----EECS------------SSCHHHH
T ss_pred CCCceEEE--Ee--CCcCCCCc-CHHH---------HHHHHHHHHHcCCCEEE----EECC------------CCCHHHH
Confidence 35688874 43 56554331 2222 35566667777888887 4533 1233333
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCC
Q 016156 261 REGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQ 340 (394)
Q Consensus 261 ~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~ 340 (394)
.++++.+|+++ | +++.|++|+ |+.| |.++++++ .+.++++++.|||||+++
T Consensus 52 i~~v~~vr~~~---g--~~~~l~vDa--------n~~~---------------~~~~Ai~~-~~~l~~~~i~wiEeP~~~ 102 (247)
T d1tzza1 52 RMRIEAVLEEI---G--KDAQLAVDA--------NGRF---------------NLETGIAY-AKMLRDYPLFWYEEVGDP 102 (247)
T ss_dssp HHHHHHHHHHH---T--TTCEEEEEC--------TTCC---------------CHHHHHHH-HHHHTTSCCSEEECCSCT
T ss_pred HHHHHHHHHhc---c--CCceEEecc--------cccc---------------cchhHHHH-Hhhcchhhhhhhcccccc
Confidence 44444444444 4 599999999 5655 56788885 455999999999999999
Q ss_pred CCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCC----CcEEeeccccccccCC
Q 016156 341 DDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKS----CNGLLLKVNHLFEIKS 394 (394)
Q Consensus 341 ~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a----~d~i~ik~~~~Ggit~ 394 (394)
+|++++++|++++++||++||. ..+.++++++++.++ +|++++|++++||||+
T Consensus 103 ~d~~~~~~l~~~~~ipia~gE~-~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~GGit~ 159 (247)
T d1tzza1 103 LDYALQAALAEFYPGPMATGEN-LFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCE 159 (247)
T ss_dssp TCHHHHHHHTTTCCSCEEECTT-CCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHH
T ss_pred ccchhhhhhhhccccccccchh-hhhhHHHHHHHHccCCcCcceeEeeccccccchhH
Confidence 9999999999999999999997 568999999999877 4999999999999984
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.82 E-value=2e-21 Score=180.31 Aligned_cols=132 Identities=16% Similarity=0.261 Sum_probs=103.8
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccC
Q 016156 217 SFAEALRMGS-EVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKD 295 (394)
Q Consensus 217 ~~~ea~~~~~-~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~n 295 (394)
.++++++... +||+++| .|.| ..+.+.+.++++.+++++ | +++.|++|+ |
T Consensus 20 ~~~e~~~~~~~~G~~~~K----iKvG------------~~~~~~Di~~v~~ir~~~---g--~~~~l~vDa--------N 70 (243)
T d1nu5a1 20 DIDSALEMIETRRHNRFK----VKLG------------ARTPAQDLEHIRSIVKAV---G--DRASVRVDV--------N 70 (243)
T ss_dssp HHHHHHHHHHTTSCSEEE----EECS------------SSCHHHHHHHHHHHHHHH---G--GGCEEEEEC--------T
T ss_pred HHHHHHHHHHhCCCCEEE----EEeC------------CCCHHHHHHHHHHHHHHh---C--cccceEEEC--------C
Confidence 3556655553 3777777 4533 122333355555655555 3 489999999 5
Q ss_pred CeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHh
Q 016156 296 GNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 296 g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~ 375 (394)
+.| |.++++++. +.++++++.|+|||++++|++++++|++++++||++||. .++.++++++++
T Consensus 71 ~~~---------------~~~~A~~~~-~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~ipIa~gE~-~~~~~~~~~~i~ 133 (243)
T d1nu5a1 71 QGW---------------DEQTASIWI-PRLEEAGVELVEQPVPRANFGALRRLTEQNGVAILADES-LSSLSSAFELAR 133 (243)
T ss_dssp TCC---------------CHHHHHHHH-HHHHHHTCCEEECCSCTTCHHHHHHHHHHCSSEEEESTT-CCSHHHHHHHHH
T ss_pred CCc---------------cchhHHHHH-HHhcchhhhhhhhhhhhccccccccchhccccccccccc-cccchhhhhccc
Confidence 655 567888865 458999999999999999999999999999999999997 578999999999
Q ss_pred cCCCcEEeeccccccccCC
Q 016156 376 KKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 376 ~~a~d~i~ik~~~~Ggit~ 394 (394)
.+++|++++|++++||+|+
T Consensus 134 ~~~~d~~~~d~~~~GGit~ 152 (243)
T d1nu5a1 134 DHAVDAFSLKLCNMGGIAN 152 (243)
T ss_dssp TTCCSEEEECHHHHTSHHH
T ss_pred cccccccccccccccchHH
Confidence 9999999999999999974
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=1.2e-20 Score=178.64 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCC---------C---CCCChHHHHHHHHHHHHHcCCCCCcEEEE
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFA---------P---NVQDNREGLVLLTDAIEKAGYTGKINIGM 284 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~---------~---~~~~~~~~l~~v~~Av~~ag~~gdi~l~i 284 (394)
..++|.+...+||+++| .+.+... ..++.+.+. . +++.+.++++++|+++ | +++.||+
T Consensus 30 ~~~~a~~~~~~Gf~aiK----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~v---G--~~~~l~v 99 (278)
T d2gl5a1 30 YAEAARAALDDGYDAIK----VDPLEID-RNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAM---G--DDADIIV 99 (278)
T ss_dssp HHHHHHHHHHTTCSEEE----ECSSSBC-TTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHH---C--SSSEEEE
T ss_pred HHHHHHHHHHcCCCEEE----EccccCC-ccccccccccccccccccccHHHHHHHHHHHHHHHHHh---c--cccceee
Confidence 46788888888898888 3311100 000000000 0 1112344555555555 4 4999999
Q ss_pred ecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccc
Q 016156 285 DVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLV 364 (394)
Q Consensus 285 D~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~ 364 (394)
|+ |+.| +.++++++ .+.+++|++.|||||++++|++++++|++++++||++||. .
T Consensus 100 Da--------n~~~---------------~~~~Ai~~-~~~L~~~~l~wiEePi~~~d~~~~~~L~~~~~ipIa~gE~-~ 154 (278)
T d2gl5a1 100 EI--------HSLL---------------GTNSAIQF-AKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGER-S 154 (278)
T ss_dssp EC--------TTCS---------------CHHHHHHH-HHHHGGGCEEEEECSSCSSCHHHHHHHHHHCSSCEEECTT-C
T ss_pred cc--------cccc---------------cchhhHHH-HHHhcccccceecccccccchhhhhhhccccccceecccc-c
Confidence 99 5545 56788885 5559999999999999999999999999999999999997 5
Q ss_pred cCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 365 TNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 365 ~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
.++++++++++.+++|++|+|++++||||+
T Consensus 155 ~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 184 (278)
T d2gl5a1 155 YTRWGYRELLEKQSIAVAQPDLCLCGGITE 184 (278)
T ss_dssp CTTHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred CChHHHhhhhccccceeEeeccccccchhh
Confidence 679999999999999999999999999984
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=6e-20 Score=152.71 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=86.3
Q ss_pred ceEEEEEEEEEec------CCCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHh
Q 016156 44 AKVKSVKARQIID------SRGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILG 116 (394)
Q Consensus 44 ~~I~~V~~r~v~~------~~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~ 116 (394)
|||++|+.+.+-- -.....|.|+|+|| |++ |+||+.. .+. .....+..+.+.++
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~~~~iiV~i~td~Gi~----------G~Ge~~~-------~~~--~~~~~~~~~~~~~~ 61 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLS----------GIGEVGL-------AYG--AGAKAGVGIIRDLA 61 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTTCCCEEEEEEETTSCE----------EEEEESC-------SSS--TTHHHHHHHHHHHG
T ss_pred CEEeEEEEEEEcCCCCCCccccceeEEEEEEECCCCE----------EEEeecc-------ccc--cchHHHHHHHHHHH
Confidence 8999999988811 01135699999999 986 9999732 111 12333444667799
Q ss_pred hhhcCCCCCCHHHHHHHHHHhcC-CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 117 PKLVGVDIRDQAEVDAIMLEIDG-TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 117 p~LiG~dp~~~e~Id~~l~~~~~-~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
|.|+|+|+.+.+++|+.|++... ....+++...|++|||+||||+.||.+|+|||+|||
T Consensus 62 ~~lig~~~~~~e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLG 121 (122)
T d2gl5a2 62 PLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLG 121 (122)
T ss_dssp GGTTTSCTTCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred hhhcccccchhhHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcC
Confidence 99999999999999999986321 122334556799999999999999999999999999
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.80 E-value=2.2e-20 Score=172.90 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
..+++.+...+||+++| .|.| + +.+.++++++|+++ | +++.||+|+ |+
T Consensus 20 ~~~~~~~~~~~Gf~~~K----ikvg-------------~--~~Di~~i~~ir~~~---g--~~~~l~vDa--------N~ 67 (242)
T d1sjda1 20 LLDVVGGYLDEGYVRIK----LKIE-------------P--GWDVEPVRAVRERF---G--DDVLLQVDA--------NT 67 (242)
T ss_dssp HHHHHHHHHHHTCSEEE----EECB-------------T--TBSHHHHHHHHHHH---C--TTSEEEEEC--------TT
T ss_pred HHHHHHHHHHcCCCEEE----EECC-------------c--hhHHHHHHHHHHHh---C--CCeeEeecc--------cc
Confidence 45666667777888887 4532 1 23367888888887 3 489999999 56
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.|+ .+++++ +.+ ++++++.|||||++++|++++++|++++++||++||. ..+.++++++++.
T Consensus 68 ~~~---------------~~~a~~-~~~-l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~gE~-~~~~~~~~~~~~~ 129 (242)
T d1sjda1 68 AYT---------------LGDAPQ-LAR-LDPFGLLLIEQPLEEEDVLGHAELARRIQTPICLDES-IVSARAAADAIKL 129 (242)
T ss_dssp CCC---------------GGGHHH-HHT-TGGGCCSEEECCSCTTCHHHHHHHHTTCSSCEEESTT-CCSHHHHHHHHHT
T ss_pred ccc---------------hhhhhH-Hhh-hhhhhhHHHHhhhhhhhHHHHHHHHhccCcccccccc-cccchhhhhhhhc
Confidence 564 456776 466 7999999999999999999999999999999999997 4679999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++|++++||+|+
T Consensus 130 ~~~d~~~~d~~~~GGit~ 147 (242)
T d1sjda1 130 GAVQIVNIKPGRVGGYLE 147 (242)
T ss_dssp TCCSEEEECTTTTTSHHH
T ss_pred CccCEEEeccccCccchh
Confidence 999999999999999974
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.80 E-value=9.8e-21 Score=175.57 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
.++++.+...+||+++| .|.| ++ .+.++++.+|+++ |++.||+|+ |+
T Consensus 20 ~~~~~~~~~~~Gf~~~K----ikvg-------------~~--~D~~~v~~ir~~~------~~~~l~vDa--------N~ 66 (244)
T d1wufa1 20 LLQLVNQYVDQGYERVK----LKIA-------------PN--KDIQFVEAVRKSF------PKLSLMADA--------NS 66 (244)
T ss_dssp HHHHHHHHHHHTCCEEE----EECB-------------TT--BSHHHHHHHHTTC------TTSEEEEEC--------TT
T ss_pred HHHHHHHHHHCCCCEEE----EEeC-------------Cc--HHHHHHHHHHHhc------cchhhhhhh--------hc
Confidence 46677777777888887 5533 11 2245565555543 789999999 66
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.|+ .++++ ++. .+++|++.|||||++++|++++++|++++++||++||. .+++++++++++.
T Consensus 67 ~~~---------------~~~a~-~~~-~l~~~~~~wiEeP~~~~d~~~~~~l~~~~~~pia~dE~-~~~~~~~~~~i~~ 128 (244)
T d1wufa1 67 AYN---------------REDFL-LLK-ELDQYDLEMIEQPFGTKDFVDHAWLQKQLKTRICLDEN-IRSVKDVEQAHSI 128 (244)
T ss_dssp CCC---------------GGGHH-HHH-TTGGGTCSEEECCSCSSCSHHHHHHHTTCSSEEEECTT-CCSHHHHHHHHHH
T ss_pred ccc---------------chhhh-hhh-cccccchhhhcCcccccchhhhhccccccccccccCcc-ccchhhhhhhccc
Confidence 664 44565 454 48999999999999999999999999999999999996 5789999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++|++++||||+
T Consensus 129 ~a~d~v~~d~~~~GGit~ 146 (244)
T d1wufa1 129 GSCRAINLKLARVGGMSS 146 (244)
T ss_dssp TCCSEEEECTGGGTSHHH
T ss_pred cccceeecccccccchhh
Confidence 999999999999999974
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.80 E-value=7.3e-21 Score=177.02 Aligned_cols=163 Identities=18% Similarity=0.277 Sum_probs=117.6
Q ss_pred ccceeeEEeecCCcCCCCCCcccceeeccCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHH
Q 016156 184 VMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREG 263 (394)
Q Consensus 184 ~iP~p~~~~i~gG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~ 263 (394)
..|+|+| |.|.++.+..+|+|+++. ...+.++ +|+.+| .++|++|+ +..+.
T Consensus 4 ~~~VP~~-----g~~g~~~~~~~e~mI~~~-a~~~~~~------~~~~lk-----------~kvG~~g~------~~~e~ 54 (251)
T d1kkoa1 4 PEAIPLF-----GQSGDDRYIAVDKMILKG-VDVLPHA------LINNVE-----------EKLGFKGE------KLREY 54 (251)
T ss_dssp CCCCCEE-----CCCTTCTTHHHHHHHHTT-CSEEEET------TCCCCC-----------CCCCTTSH------HHHHH
T ss_pred CCCcccc-----cccCCCcccchHHHHHhh-hHHHHHH------HHHHHH-----------HHhCCCCC------CcHHH
Confidence 4567777 345556667778777542 2221111 244444 34666654 24567
Q ss_pred HHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhc---CCceeeeCCC
Q 016156 264 LVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD---FPIVSIEDPF 338 (394)
Q Consensus 264 l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~---~~i~~iEdPl 338 (394)
++.+.++|+.++.. | ++.|++|++...- +. ..|+++++++++.++.+. |+| |||||+
T Consensus 55 ~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~------~~-----------~~~~~~~ai~~l~~L~~~~~~~~l-~IEqP~ 116 (251)
T d1kkoa1 55 VRWLSDRILSLRSSPRYHPTLHIDVYGTIG------LI-----------FDMDPVRCAEYIASLEKEAQGLPL-YIEGPV 116 (251)
T ss_dssp HHHHHHHHHHHCSSTTCCCEEEEECTTHHH------HH-----------TTTCHHHHHHHHHHTGGGGTTSCE-EEECCC
T ss_pred HHHHHHHHHHHHhCcCCCcceeeccccccc------cc-----------cCCCHHHHHHHHHHHHHhcCCCce-eecCCc
Confidence 78788888887766 5 8999999943211 11 245789999988886543 555 999999
Q ss_pred C----CCCHHHHHHHHhhc-----CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 339 D----QDDWSSWASLQSSV-----DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 339 ~----~~D~~~~~~L~~~~-----~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
+ ++|+++|++|++++ +|||++||+ +.++++++++++.++||+++||++|+||||+
T Consensus 117 ~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~-~~t~~d~~~~i~~~a~d~v~iK~~k~GGi~~ 180 (251)
T d1kkoa1 117 DAGNKPDQIRMLTAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMVQIKTPDLGGIHN 180 (251)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTT-CCSHHHHHHHHHTTCCSEEEECGGGGSSTHH
T ss_pred ccccchHHHHHHHHHHHHHhccCCCceEeccce-eCCHHHHHHHHHhCCccceeccccccCCHHH
Confidence 6 57899999999875 599999997 5679999999999999999999999999984
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=2.2e-20 Score=171.54 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCe
Q 016156 218 FAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGN 297 (394)
Q Consensus 218 ~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~ 297 (394)
.+++.++...||+.+| .|.| .++.+++.++++.+|+++ | +++.|++|+ |+.
T Consensus 17 ~e~~~~~~~~G~~~~K----ikvG------------~~~~~~di~~i~~ir~~~---g--~~~~l~vDa--------N~~ 67 (227)
T d2mnra1 17 TERAVTAAELGFRAVK----TKIG------------YPALDQDLAVVRSIRQAV---G--DDFGIMVDY--------NQS 67 (227)
T ss_dssp HHHHHHHHHTTCSEEE----EECC------------CSSHHHHHHHHHHHHHHH---C--TTSEEEEEC--------TTC
T ss_pred HHHHHHHHHCCCCEEE----EccC------------CCCHHHHHHHHHHHHHHh---C--CCcEEEEec--------ccc
Confidence 4566666667888887 5533 133333445555555555 4 599999999 554
Q ss_pred eeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcC
Q 016156 298 YDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKK 377 (394)
Q Consensus 298 Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~ 377 (394)
| |.++++++ .+.++++++.|||||++++|++++++|++++++||++||. .+++.+++++++.+
T Consensus 68 ~---------------~~~~A~~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~ipia~gE~-~~~~~~~~~~~~~~ 130 (227)
T d2mnra1 68 L---------------DVPAAIKR-SQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGEN-WLGPEEMFKALSIG 130 (227)
T ss_dssp S---------------CHHHHHHH-HHHHHHHTCSEEECCSCTTCHHHHHHHHHTCSSCEEECTT-CCSHHHHHHHHHTT
T ss_pred C---------------ChHHHHHH-HHHhhhchhhhhcCcccccchhhhHHHHHHcCCccccCce-eEeechhhhhHhcC
Confidence 4 56788885 5569999999999999999999999999999999999997 57899999999999
Q ss_pred CCcEEeeccccccccCC
Q 016156 378 SCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 378 a~d~i~ik~~~~Ggit~ 394 (394)
++|++++|++++||||+
T Consensus 131 ~~d~~~~d~~~~GGit~ 147 (227)
T d2mnra1 131 ACRLAMPDAMKIGGVTG 147 (227)
T ss_dssp CCSEECCBTTTTTHHHH
T ss_pred ceeeeecccccccchhh
Confidence 99999999999999973
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=1.7e-19 Score=150.18 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=93.3
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+ ..+.| ...+.|+|+|+ |.+ |+||+... +.|.+++.+.+.+.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~ 65 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAV----------GWGEAPPT-----LVITGDSMDSIESA 65 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCE----------EEEEECCB-----TTTTCBCHHHHHHH
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCE----------EEEEeccc-----ccccccccchhHHH
Confidence 89999998887 23444 36799999999 886 99997542 35778889999999
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+++.++|.|+|+||.+.+++++.|...- . +. ..|++|||+|+||+.||.+|+|||++||
T Consensus 66 i~~~~~p~l~g~~~~~~~~~~~~l~~~~-~---~~--~~a~aaid~AlwDl~~K~~g~pl~~llG 124 (125)
T d1jpma2 66 IHHVLKPALLGKSLAGYEAILHDIQHLL-T---GN--MSAKAAVEMALYDGWAQMCGLPLYQMLG 124 (125)
T ss_dssp HHHTHHHHHTTCBGGGHHHHHHHHHHSS-S---SC--HHHHHHHHHHHHHHHHHHTTSBHHHHTT
T ss_pred HHHHHHhhhcccCcccHHHHHHHhhhhc-c---Cc--cHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999999999999999999999997621 1 11 3699999999999999999999999999
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.79 E-value=2.3e-20 Score=173.97 Aligned_cols=131 Identities=19% Similarity=0.267 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
..+++.+...+||+++| .|.| .+++.+.++++.||+++ | +++.|++|+ |+
T Consensus 19 ~~~~a~~~~~~Gf~~~K----ikvG-------------~~~~~di~~v~~vr~~~---g--~~~~l~vDa--------N~ 68 (252)
T d1yeya1 19 LVRLAKEAVADGFRTIK----LKVG-------------ANVQDDIRRCRLARAAI---G--PDIAMAVDA--------NQ 68 (252)
T ss_dssp HHHHHHHHHHTTCSEEE----EECC-------------SCHHHHHHHHHHHHHHH---C--SSSEEEEEC--------TT
T ss_pred HHHHHHHHHHcCCCEEE----EECC-------------CCHHHHHHHHHHHHHHh---C--CCceEeecc--------cc
Confidence 35667777777888887 4533 13333455555555555 4 489999999 55
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhc-CCeEEecCccccCHHHHHHHHh
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSV-DIQLVGDDLLVTNPKRIAEAIQ 375 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~-~i~I~gde~~~~~~~~~~~~i~ 375 (394)
.| +.++++++.. .++++++.|||||++++|.+++++++++. ++||++||. .+++++++++++
T Consensus 69 ~~---------------~~~~A~~~~~-~l~~~~~~~iEeP~~~~d~~~~~~~~~~~~~ipia~gE~-~~~~~~~~~~i~ 131 (252)
T d1yeya1 69 RW---------------DVGPAIDWMR-QLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEH-TQNRVVFKQLLQ 131 (252)
T ss_dssp CC---------------CHHHHHHHHH-TTGGGCCSCEECCSCTTCHHHHHHHHHHSTTSCEECCTT-CCSHHHHHHHHH
T ss_pred Cc---------------chHHHHHHHH-hhhhcCceeecCCcchhhHHHHHHHhhccCCCceecccc-ccchhhhhhHhh
Confidence 44 5778898655 58999999999999999999999988885 699999997 578999999999
Q ss_pred cCCCcEEeeccccccccCC
Q 016156 376 KKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 376 ~~a~d~i~ik~~~~Ggit~ 394 (394)
.+++|++++|++++||||+
T Consensus 132 ~~a~d~~~~d~~~~GGit~ 150 (252)
T d1yeya1 132 AGAVDLIQIDAARVGGVNE 150 (252)
T ss_dssp HTCCSEECCCTTTSSHHHH
T ss_pred ccccceeccccccccCchh
Confidence 9999999999999999974
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.79 E-value=2e-19 Score=150.13 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=92.0
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|||++|+++.+ -.+.+ .+.+.|+|++||.+ |+||+.... .+.|.+++.+.+...+
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~dG~~----------G~GE~~~~~---~~~~~~~~~~~~~~~l 67 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYSEGLV----------GVGEGGSVG---GPVWSAECAETIKIIV 67 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEBTTBC----------CEEECCCST---TTTTSSCCHHHHHHHH
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEcCCce----------EeEeecccC---CCccccchHHHHHHHH
Confidence 78999998877 23444 46789999987654 999974432 1357888999999999
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
++.++|.|+|+||.+.+++++.|... .. +. ..|++|||+||||+.||..|+|||++||
T Consensus 68 ~~~l~p~lig~~~~~~~~~~~~~~~~--~~--~~--~~A~aaid~AlwDl~~K~~~~pl~~llG 125 (126)
T d2chra2 68 ERYLAPHLLGTDAFNVSGALQTMARA--VT--GN--ASAKAAVEMALLDLKARALGVSIAELLG 125 (126)
T ss_dssp HHHTHHHHTTSCTTCHHHHHHHHHTT--CS--SC--HHHHHHHHHHHHHHHHHHTTCCHHHHTT
T ss_pred HHHhcccccccccccHHHHHHHhhhc--cc--cc--hHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999999999999999999999752 11 11 3699999999999999999999999999
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=3.8e-20 Score=170.43 Aligned_cols=132 Identities=17% Similarity=0.312 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
..+++.+...+||+++| .|.| ..+++.+.++++.+|+++ | +++.|++|+ |+
T Consensus 19 ~~~~a~~~~~~G~~~~K----ikig------------~~~~~~d~~~i~~ir~~~---g--~~~~i~vD~--------N~ 69 (234)
T d1jpma1 19 MAADAENYLKQGFQTLK----IKVG------------KDDIATDIARIQEIRKRV---G--SAVKLRLDA--------NQ 69 (234)
T ss_dssp HHHHHHHHHHTTCCEEE----EECS------------SSCHHHHHHHHHHHHHHH---G--GGSEEEEEC--------TT
T ss_pred HHHHHHHHHHCCCCEEE----EECC------------CCCHHHHHHHHHHHHHHc---C--chhhhhhhc--------cc
Confidence 46677777777888888 5533 233444455666666665 3 489999999 55
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhc--CCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHH
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRD--FPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI 374 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~--~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i 374 (394)
.| +.++++++..+ +++ +++.|+|||++++|+++|++|++++++||+.||. .++++++.+++
T Consensus 70 ~~---------------~~~~a~~~~~~-le~~~~~i~~~EeP~~~~d~~~~~~l~~~~~~pia~gE~-~~~~~~~~~~i 132 (234)
T d1jpma1 70 GW---------------RPKEAVTAIRK-MEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADES-VFTPRQAFEVL 132 (234)
T ss_dssp CS---------------CHHHHHHHHHH-HHHTTCCEEEEECCSCTTCHHHHHHHHHHCSSCEEESTT-CSSHHHHHHHH
T ss_pred cc---------------chHHHHHHHHH-HHhccCceeeecCCccccCHHHHHHhhccccceeecccc-cccchhhhhhh
Confidence 44 56788886554 675 6689999999999999999999999999999997 57899999999
Q ss_pred hcCCCcEEeeccccccccCC
Q 016156 375 QKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 375 ~~~a~d~i~ik~~~~Ggit~ 394 (394)
+.+++|++++|++++||+|+
T Consensus 133 ~~~~~d~v~~d~~~~GGit~ 152 (234)
T d1jpma1 133 QTRSADLINIKLMKAGGISG 152 (234)
T ss_dssp HTTCCSEEEECHHHHTSHHH
T ss_pred ccCCcCeEEEeeecCCCHHH
Confidence 99999999999999999974
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.78 E-value=4e-20 Score=171.32 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
..+++.+...+||+++| +|.| ++ .+.++++.+|+++ ||+.|++|+ |+
T Consensus 20 ~~~~~~~~~~~G~~~~K----iKvg-------------~~--~D~~~v~~ir~~~------~d~~l~vD~--------n~ 66 (243)
T d1r0ma1 20 TVDLVRRHVEQGYRRIK----LKIK-------------PG--WDVQPVRATREAF------PDIRLTVDA--------NS 66 (243)
T ss_dssp HHHHHHHHHHTTCSCEE----EECB-------------TT--BSHHHHHHHHHHC------TTSCEEEEC--------TT
T ss_pred HHHHHHHHHHcCCCEEE----EEcC-------------cc--hhHHHHHHHHHhc------cCceEEEec--------cc
Confidence 35667777777888887 5533 11 2366777777765 789999999 67
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.|++ .+++. +. .++++++.|||||++++|+++|++|++++++||++||. ..++++++++++.
T Consensus 67 ~~~~---------------~~a~~-~~-~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~ipia~gE~-~~~~~~~~~~i~~ 128 (243)
T d1r0ma1 67 AYTL---------------ADAGR-LR-QLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLDES-VASASDARKALAL 128 (243)
T ss_dssp CCCG---------------GGHHH-HH-TTGGGCCSCEECCSCTTCSHHHHHHHHHCSSCEEESTT-CCSHHHHHHHHHH
T ss_pred cCch---------------HHHHH-hh-hhhhccchhhhhhccccchHHHHHHhhcCCcccccccc-hhhhhhhhhhhhc
Confidence 6653 45555 34 48899999999999999999999999999999999996 5789999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++|++++||||+
T Consensus 129 ~~~d~v~~d~~~~GGit~ 146 (243)
T d1r0ma1 129 GAGGVINLKVARVGGHAE 146 (243)
T ss_dssp TSCSEEEECTTTTTSHHH
T ss_pred ccccceecccceeccHHH
Confidence 999999999999999974
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.78 E-value=6.6e-19 Score=146.99 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=93.2
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|||++|+.+.+ ..+.+ +..+.|+|++||++ |+||+..... +.|.+++.+.+...|
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~dG~~----------G~GE~~~~~~---~~~~~~~~~~~~~~i 67 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKAGGLV----------GIGEGGSVGG---PTWGSESAETIKVII 67 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEE----------EEEEECCSTT---TTTSSCCHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEcCCeE----------EEeeccccCC---CccccccHHHHHHHH
Confidence 89999998877 23433 46799999988775 9999854332 457788899999999
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
++.++|.|+|+|+.+.+++++.|.... ..+ ..|++|+|+||||+.||..|+|||++||
T Consensus 68 ~~~~~p~l~g~~~~~~~~~~~~~~~~~-~~~-----~~A~aaid~AlwDl~~K~~~~pl~~llG 125 (126)
T d1nu5a2 68 DNYLAPLLVGKDASNLSQARVLMDRAV-TGN-----LSAKAAIDIALHDLKARALNLSIADLIG 125 (126)
T ss_dssp HHTHHHHHTTSBTTCHHHHHHHHHHHC-SSC-----HHHHHHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred HHHhhhhhhhcCcccHHHHHHHhhhhh-hcc-----chHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 999999999999999999999997631 111 3699999999999999999999999999
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.77 E-value=5.3e-20 Score=170.09 Aligned_cols=127 Identities=20% Similarity=0.329 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
.++++.....+||+++| .|.| ++ .+.++++.+|+++ +|+.|++|+ |+
T Consensus 20 ~~~~~~~~~~~G~~~~K----ikvg-------------~~--~D~~~v~~ir~~~------~d~~l~vDa--------N~ 66 (241)
T d1wuea1 20 LLKQVQLAVEKGYQRVK----LKIR-------------PG--YDVEPVALIRQHF------PNLPLMVDA--------NS 66 (241)
T ss_dssp HHHHHHHHHHTTCSCEE----EECB-------------TT--BSHHHHHHHHHHC------TTSCEEEEC--------TT
T ss_pred HHHHHHHHHHCCCCEEE----EEcC-------------cc--HHHHHHHHHHHhc------cccceeecc--------cc
Confidence 46677777777888887 4533 11 2356677766654 689999999 67
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.|+ .++++. +.+ ++++++.|||||++++|++++++|++++++||++||. .+++++++++++.
T Consensus 67 ~~~---------------~~~a~~-~~~-~~~~~i~~iEeP~~~~~~~~~~~l~~~~~~pIa~gE~-~~~~~~~~~~i~~ 128 (241)
T d1wuea1 67 AYT---------------LADLPQ-LQR-LDHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDEN-IRSLKDCQVALAL 128 (241)
T ss_dssp CCC---------------GGGHHH-HHG-GGGSCCSCEECCSCTTCSHHHHHHHTTCSSCEEECTT-CCSHHHHHHHHHH
T ss_pred cCC---------------HHHhhh-hhh-hhhhhhhhhcCcccccchhhhhhhhcccccccccCcc-cccchhhhhhhhh
Confidence 664 446665 455 6789999999999999999999999999999999997 5789999999999
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++|++++||||+
T Consensus 129 ~~~d~i~~d~~~~GGit~ 146 (241)
T d1wuea1 129 GSCRSINLKIPRVGGIHE 146 (241)
T ss_dssp TCCSEEEECHHHHTSHHH
T ss_pred hhhhhhccccccccCcHH
Confidence 999999999999999974
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.77 E-value=9.7e-19 Score=146.19 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=85.5
Q ss_pred ceEEEEEEEEE-------ecCCC---------CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHH
Q 016156 44 AKVKSVKARQI-------IDSRG---------NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLN 106 (394)
Q Consensus 44 ~~I~~V~~r~v-------~~~~g---------~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~ 106 (394)
|+|++|+++.+ ++..+ ...+.|+|+|+ |+. |+||+.. + ..
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~----------G~Ge~~~----------~---~~ 57 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQE----------GHSFTAP----------E---IV 57 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCE----------EEEEECG----------G---GG
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCE----------EEEEeCC----------H---HH
Confidence 89999999888 22211 34689999999 886 8998631 1 12
Q ss_pred HHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 107 AVKNINDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 107 a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
..+.|++.++|.|+|+++.+.+.+|+.+...... ..+.....|++|||+||||+.||.+|+|||+|||
T Consensus 58 ~~~~i~~~l~~~lig~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLG 125 (126)
T d1rvka2 58 RPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQRG-SAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIG 125 (126)
T ss_dssp CHHHHHHTHHHHHTTSBTTCHHHHHHHHHHHHTT-TTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCcchhhhhhhhhcccccc-CCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 2345788999999999999999999999875332 2234556799999999999999999999999999
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=6.9e-18 Score=138.45 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=82.8
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+ .++.| .+.+.|+|+|| |++ |+||+... .......
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~----------G~Ge~~~~------------~~~~~~~ 58 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGID----------GWGECVDW------------LPALHVG 58 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECSC------------HHHHHHH
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcce----------EEEecCCc------------hhhhHHH
Confidence 78999998877 23444 36799999999 886 99997321 1233345
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
|.+.++|.|+|+||.+.+++|+.+.... ..|++|||+||||+.||..|+|||+|||
T Consensus 59 i~~~l~~~l~g~~~~~~~~~~~~~~~~~---------~~a~aaid~AlwDl~~K~~~~Pl~~lLG 114 (115)
T d2gdqa2 59 FTKRIIPFLLGKQAGSRLSLVRTIQKWH---------QRAASAVSMALTEIAAKAADCSVCELWG 114 (115)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHC---------HHHHHHHHHHHHHHHHHHTTSBHHHHTT
T ss_pred HHHHHhhhhcccChhhHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHhCCCHHHHcC
Confidence 7788999999999999999999997531 3699999999999999999999999999
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.74 E-value=5.9e-18 Score=157.50 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=99.2
Q ss_pred CCCCChHHHHHHHHHHHHHcCCC-C-CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhh---cC
Q 016156 255 PNVQDNREGLVLLTDAIEKAGYT-G-KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVR---DF 329 (394)
Q Consensus 255 ~~~~~~~~~l~~v~~Av~~ag~~-g-di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~---~~ 329 (394)
++.+++.+.++.+.++|+++++. | ++.|++|++..... | ..|+++|+++++.++.+ +|
T Consensus 46 ~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~~~~~~--n---------------~~~~~~eai~~~~~L~~~~~~y 108 (253)
T d1kcza1 46 LKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGA--A---------------FDVDIKAMADYIQTLAEAAKPF 108 (253)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHH--H---------------TTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCccccHHHHHHHHHHHHHHhcccccCceeeehhhhccCc--c---------------CCCCHHHHHHHHHHHHHhcCCC
Confidence 55566678899999999999877 5 89999999533211 1 24578899988776443 47
Q ss_pred CceeeeCCCCCCC----HHHHHHHHhhc-----CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 330 PIVSIEDPFDQDD----WSSWASLQSSV-----DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 330 ~i~~iEdPl~~~D----~~~~~~L~~~~-----~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++ |||||++++| +++|++|++++ ++||++||+ ++++++++++++.++||+++||++|+||||+
T Consensus 109 ~i-~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~-~~~~~d~~~~i~~~a~d~v~iK~~k~GGi~~ 180 (253)
T d1kcza1 109 HL-RIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW-CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNN 180 (253)
T ss_dssp CE-EEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTT-CCSHHHHHHHHHTTCSSEEEECTGGGSSTHH
T ss_pred Cc-eEecCCCCccHhhHHHHHHHHHHHHhccCCccceecccc-ccCHHHHHHHHHhCCcCeeeccccccCCHHH
Confidence 77 9999999999 67889998874 599999996 7889999999999999999999999999974
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.74 E-value=1.1e-18 Score=145.89 Aligned_cols=112 Identities=23% Similarity=0.212 Sum_probs=92.8
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+.+.+ ..+.| .+++.|+|+|+ |++ |+||+..... +.|.+++...+...
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 67 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIH----------GYGELEAFPL---PDYTEETLSSAILI 67 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCE----------EEEEECCCSS---TTSSSCCHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcE----------EEEEEeecCc---cCCChhhhhhhhhe
Confidence 78888888877 13444 46899999999 886 9999743322 35788999999999
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+++.+.|.|+|+++.+.+.+++.+..+.+. ..|++|||+||||+.||..|+|||+|||
T Consensus 68 l~~~l~p~l~g~~~~~~~~i~~~~~~~~~~-------~~A~aaid~AlwDl~~K~~~~pl~~lLG 125 (126)
T d1wufa2 68 IKEQLLPLLAQRKIRKPEEIQELFSWIQGN-------EMAKAAVELAVWDAFAKMEKRSLAKMIG 125 (126)
T ss_dssp HHHTTHHHHHHCEESSTTHHHHHHTTSCSC-------HHHHHHHHHHHHHHHHHHTTSBHHHHTT
T ss_pred eeecccchhcCCCchhHHHHHHHhhhccCc-------hHHHHHHHHHHHHHHHHHcCCcHHHHhC
Confidence 999999999999999999999888644211 3699999999999999999999999998
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.2e-18 Score=165.19 Aligned_cols=90 Identities=13% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCC----HHHHHHHHhhc
Q 016156 278 GKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDD----WSSWASLQSSV 353 (394)
Q Consensus 278 gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D----~~~~~~L~~~~ 353 (394)
|++.|+||+ |+.| |.++++++ .+.++ +++.|||||++++| .+.+++|++++
T Consensus 91 pd~~l~vDa--------N~~~---------------s~~~Ai~~-~~~le-~~l~w~EEPv~~~d~~~~~~~l~~lr~~~ 145 (309)
T d1jdfa1 91 PQARITLDP--------NGAW---------------SLNEAIKI-GKYLK-GSLAYAEDPCGAEQGFSGREVMAEFRRAT 145 (309)
T ss_dssp TTSCEEEEC--------TTBB---------------CHHHHHHH-HHHTT-TTCSCEESCBCCBTTBCHHHHHHHHHHHH
T ss_pred CCCeEEeec--------cCCC---------------CHHHHHHH-HHHHh-hcchhhhhhcccCcchhhHHHHHHhhccc
Confidence 678999999 5655 56788874 56676 79999999999988 68899999999
Q ss_pred CCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 354 DIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 354 ~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
++||++||. .+++++++++++.+++|++++|+ ++||||+
T Consensus 146 ~ipIa~gE~-~~~~~~~~~~i~~~a~di~~~d~-~~GGit~ 184 (309)
T d1jdfa1 146 GLPTATNMI-ATDWRQMGHTLSLQSVDIPLADP-HFWTMQG 184 (309)
T ss_dssp CCCEEESSS-SSSHHHHHHHHHHTCCSEEBCCH-HHHCHHH
T ss_pred ccceecCcc-cchhhhhhhhhhhccceeeeccc-ccccchH
Confidence 999999997 56799999999999999999997 7899974
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.69 E-value=3e-17 Score=139.22 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=83.4
Q ss_pred eEEEEEEEEEe----------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 45 KVKSVKARQII----------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 45 ~I~~V~~r~v~----------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
+|++|+++.+- |+.+ ...+.|+|+|| |.. |+||+.... .+.+. ....
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~----------g~G~~~~~~-------~~~~~-~~~~ 63 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAED----------LAGYGLVFT-------IGRGN-DVQT 63 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTT----------CEEEEEEEE-------CSTTH-HHHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCc----------EEEEEEEec-------CCChH-HHHH
Confidence 79999999981 1111 12589999999 764 667754321 12222 2334
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHH-hcC------CCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhc
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLE-IDG------TPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQE 176 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~-~~~------~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~ 176 (394)
.+.+.++|.|+|+||.+.+++|+.|++ +.. ..+.+++..+|++|||+||||+.||.+|+|||+|||+
T Consensus 64 ~~~~~l~p~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~ 137 (139)
T d1yeya2 64 AAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAE 137 (139)
T ss_dssp HHHHTTHHHHTTCBHHHHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHT
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhh
Confidence 467789999999999999999999976 221 2234456678999999999999999999999999994
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.69 E-value=5.3e-17 Score=134.38 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=91.9
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+.+.+- .+.| +..+.|+|+|+ |++ |+||+..... +.|.++++..+...
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~----------G~GE~~~~~~---~~~~~e~~~~~~~~ 67 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQ----------GFGELVAFEQ---PDYVQETLVTERFI 67 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCE----------EEEEECCCSS---TTSSSCCHHHHHHH
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcE----------EEEEEeccCc---cccchhhhhhhhhh
Confidence 899999998872 3444 36799999999 886 9999754322 34667788888888
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+...+.|.++|+++.+.+++++.+....+ ...|++|||+||||+.||.+|+|||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 68 IQQHLIPLLLTEAIEQPQEVSTIFEEVKG-------HWMGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp HHHTHHHHHTTSCCCSTHHHHHHGGGSCS-------CHHHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred hhccccccccccccccHHHHHHHHhhccC-------ccHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 89999999999999999999988865321 13699999999999999999999999998
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.68 E-value=4.9e-17 Score=134.32 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=89.9
Q ss_pred ceEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|||++|+++.+ ..+.| +..+.|+|+++ |. |+||+..... +.|.+++...+...
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g~-----------G~Ge~~~~~~---~~~~~e~~~~~~~~ 66 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGE-----------GWGECVTMAG---PLYSSEYNDGAEHV 66 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSCE-----------EEEECCCBSS---SSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCce-----------EEEEEEecCc---cccchhhhhhhhhh
Confidence 78999998888 12333 46799999999 64 6777533211 35778888899999
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+++.+.|.++|.++.+.+.+++.+..+.+ ...|++|+|+||||+.||.+|+|||+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~aaid~AlwDl~ak~~~~Pl~~lLG 124 (125)
T d1sjda2 67 LRHYLIPALLAAEDITAAKVTPLLAKFKG-------HRMAKGALEMAVLDAELRAHERSFAAELG 124 (125)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred hhhccchhhcCCCccCHHHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHcCCcHHHHhC
Confidence 99999999999999999999998865321 14699999999999999999999999998
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=2.6e-16 Score=130.05 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=87.7
Q ss_pred eEEEEEEEEE--------ecCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 45 KVKSVKARQI--------IDSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 45 ~I~~V~~r~v--------~~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
.|++|+++.+ ..+.| +..+.|+|+|| |++ |+||+..... +.|..+........+
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~----------G~Ge~~~~~~---~~~~~~~~~~~~~~~ 68 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVE----------GIGEATTIGG---LAYGYESPEGIKANI 68 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCE----------EEEEEECSTT---TTTSSCCHHHHHHHH
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcE----------EEEEeecccc---ccccccchHHHHHHH
Confidence 4788888777 12323 46899999999 986 9999754321 235666777778888
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
.+.+.|.+.++++.+.++++..+..... ....|++|||+||||+.||.+|+|||++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~aaid~AlwDl~~K~~g~Pl~~lLG 126 (127)
T d1muca2 69 DAHLAPALIGLAADNINAAMLKLDKLAK------GNTFAKSGIESALLDAQGKRLGLPVSELLG 126 (127)
T ss_dssp HHTHHHHHTTSBTTCHHHHHHHHHHHCS------SCHHHHHHHHHHHHHHHHHHHTCBHHHHTT
T ss_pred HhhhcccccccchhhHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 8889999999999999999998876421 124699999999999999999999999999
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=9e-17 Score=134.97 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=80.2
Q ss_pred ceEEEEEEEEEe-------cCCC--C---ceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII-------DSRG--N---PTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~-------~~~g--~---~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
++|++|++.++. +..| . ..+.|+|+|+ |++ |+||+.. ... ....
T Consensus 3 p~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~----------G~Ge~~~----------~~~---~~~~ 59 (132)
T d1bqga2 3 PVITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHV----------GVGEVPG----------GEG---IRKT 59 (132)
T ss_dssp CBEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCE----------EEEEEEC----------CHH---HHHH
T ss_pred CEEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcE----------EEEEeCC----------cHh---HHHH
Confidence 799999999982 1222 2 3468999999 986 9999742 111 2222
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCC---------CccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNK---------SKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~---------~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
+ +.+.|.++|+++.+.+++|+.|.+....... ......|++|||+||||+.||.+|+|||+|||
T Consensus 60 ~-~~~~~~~ig~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 60 L-EDARHLLINQSIGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp H-HTTHHHHBTCBGGGHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred H-HHhhhhhcCcChHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 3 4578999999999999999999873211111 12345699999999999999999999999997
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.67 E-value=8.7e-17 Score=136.44 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=79.3
Q ss_pred ceEEEEEEEEEe------cC----CCCceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhH
Q 016156 44 AKVKSVKARQII------DS----RGNPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNIN 112 (394)
Q Consensus 44 ~~I~~V~~r~v~------~~----~g~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~ 112 (394)
|||++|+...+- ++ ...+++.|+|+|| |+.. ...+|+||+... ... ....+.
T Consensus 1 mkIvdi~~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G-----~G~~G~g~~~~~---------~~~---~~~~~~ 63 (140)
T d1tzza2 1 VRIVDVREITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREG-----KRVVGYGFNSNG---------RYG---QGGLIR 63 (140)
T ss_dssp CCEEEEEEEEEECCC---------CCCEEEEEEEEEEEECSS-----SEEEEEEECCTT---------SCC---CHHHHH
T ss_pred CeEEEEEEEEecCCCCcccccceeeceEEEEEEEEEeecccC-----cceEeeEecCCc---------hhH---HHHHHH
Confidence 788888766661 11 2257899999999 7640 011366664211 101 123357
Q ss_pred HhHhhhhcCCCC----------CCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhc
Q 016156 113 DILGPKLVGVDI----------RDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQE 176 (394)
Q Consensus 113 ~~l~p~LiG~dp----------~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~ 176 (394)
+.++|.|+|+|| .+.+.+|+.|++... .+..+....|+||||+||||+.||.+|+|||+|||+
T Consensus 64 ~~~~~~lig~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg 136 (140)
T d1tzza2 64 ERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEK-PGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAE 136 (140)
T ss_dssp HTHHHHHHTSCGGGSBCTTSSSBCHHHHHHHHTTTCC-SCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHH
T ss_pred HHHHHHHhcccHhhHhhhcccccChHHHHHHHHhhcc-cCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhcc
Confidence 789999999886 567899999976422 222344457999999999999999999999999994
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=6.8e-16 Score=128.26 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=82.5
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHH
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKN 110 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~ 110 (394)
|+|++|+++.+- ++.| ...+.|+|+|+ |++ |+||+... .+.+..... .
T Consensus 2 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~----------G~Ge~~~~--------~~~~~~~~~-~ 62 (130)
T d2mnra2 2 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVV----------GHSYLFAY--------TPVALKSLK-Q 62 (130)
T ss_dssp CBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCE----------EEEEEECS--------SGGGHHHHH-H
T ss_pred CEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccc----------eeeeeeec--------CcccchhHH-H
Confidence 789999999992 2322 36799999999 986 99997532 222233333 3
Q ss_pred hHHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhhcccCCc
Q 016156 111 INDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQELSGTK 181 (394)
Q Consensus 111 I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG~~~g~~ 181 (394)
+.+.+.|.+++. +.+.+.+|+.+..........+....|++|+|+||||+.||..|+|||+||| |+.
T Consensus 63 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLG---G~~ 129 (130)
T d2mnra2 63 LLDDMAAMIVNE-PLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLG---ANA 129 (130)
T ss_dssp HHHHHHHHHTTS-BSCHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTT---CCC
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhC---CCC
Confidence 445688888775 4566678888776433233333445799999999999999999999999999 653
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.65 E-value=1.5e-16 Score=132.04 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=87.0
Q ss_pred ceEEEEEEEEEe--------cCCC----CceEEEEEEECCeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHh
Q 016156 44 AKVKSVKARQII--------DSRG----NPTVEVDLITDDLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNI 111 (394)
Q Consensus 44 ~~I~~V~~r~v~--------~~~g----~~tv~V~V~tdG~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I 111 (394)
|||++|+.+.+- .|.| .+.|.|+++++|.+ |+||+..... +.|.++....+...+
T Consensus 3 ~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~~G~~----------G~Ge~~~~~~---~~~~~~~~~~~~~~~ 69 (127)
T d1r0ma2 3 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGEGVQ----------GVAEGTMEAR---PMYREETIAGALDLL 69 (127)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEETTEE----------EEEECCCBSS---SSSSSCBHHHHHHHH
T ss_pred ceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEcCCcE----------EEEEEEcCCC---cccchhhhhhhhhhh
Confidence 799999998882 2333 35678888877765 8888643221 246777788888888
Q ss_pred HHhHhhhhcCCCCCCHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 112 NDILGPKLVGVDIRDQAEVDAIMLEIDGTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 112 ~~~l~p~LiG~dp~~~e~Id~~l~~~~~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
.+.+.|.++|+++.+.++++..+..+.+ -..|++|||+||||+.||.+|+|||++||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~aaid~AlwDl~aK~~~~pl~~llG 126 (127)
T d1r0ma2 70 RGTFLPAILGQTFANPEAVSDALGSYRG-------NRMARAMVEMAAWDLWARTLGVPLGTLLG 126 (127)
T ss_dssp HHTHHHHHTTCEESSHHHHHHTTTTSCS-------CHHHHHHHHHHHHHHHHHHHTCBHHHHHT
T ss_pred hhhcccccccCChhhHHHHhhhhcccCC-------chHHHHHHHHHHHHHHHHHhCCcHHHHcC
Confidence 9999999999999999999887754311 13699999999999999999999999999
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.4e-16 Score=132.42 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=80.5
Q ss_pred cceEEEEEEEEEe-------cCCC-----CceEEEEEEEC-CeeeeeccCCCCCceeeeeeeecCCCCcccchhHHHHHH
Q 016156 43 SAKVKSVKARQII-------DSRG-----NPTVEVDLITD-DLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVK 109 (394)
Q Consensus 43 ~~~I~~V~~r~v~-------~~~g-----~~tv~V~V~td-G~~~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~ 109 (394)
.|+|++|++.++. ...| ...+.|+|+|+ |++ |+||+.. .... ..
T Consensus 3 ~p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~----------G~Ge~~~----------~~~~---~~ 59 (133)
T d1jdfa2 3 TPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHT----------GVGEIPG----------GEKI---RK 59 (133)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCE----------EEEEEEC----------CHHH---HH
T ss_pred CCeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCE----------EEEEecC----------cHHH---HH
Confidence 4899999998882 1111 23468999999 986 9999742 1112 22
Q ss_pred HhHHhHhhhhcCCCCCCHHHHHHHHHHhcCC---C------CCCccchhhHHHHHHHHHHHhHhhcCChhHHHhh
Q 016156 110 NINDILGPKLVGVDIRDQAEVDAIMLEIDGT---P------NKSKIGANAILGVSLSVCRAGAGAKGVPLYKHIQ 175 (394)
Q Consensus 110 ~I~~~l~p~LiG~dp~~~e~Id~~l~~~~~~---~------~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lLG 175 (394)
.+ +.++|.|+|++|.+.+++|+.|...... . ........|++|||+||||+.||.+|+|||+|||
T Consensus 60 ~~-~~~~~~l~g~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 60 TL-EDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp HH-HHHHHHHTTCBGGGHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred HH-HhhhhhhcCCChhhHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 23 4589999999999999999999763111 0 1112345699999999999999999999999997
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=2.2e-17 Score=149.36 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCC
Q 016156 217 SFAEALRMGSEVYHILKGIIKEKYGQDACNVGDEGGFAPNVQDNREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDG 296 (394)
Q Consensus 217 ~~~ea~~~~~~~~~~lK~~i~~k~G~~~~~vg~~g~~~~~~~~~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng 296 (394)
..+++.++..+||+++| .|.| . +.+.++++.+|+++ ||+.|++|+ |+
T Consensus 20 ~~~~a~~~~~~G~~~~K----iKvg-------~--------~~d~~~i~~ir~~~------~d~~l~vDa--------N~ 66 (208)
T d1jpdx1 20 MANSASTLWQAGAKLLK----VKLD-------N--------HLISERMVAIRTAV------PDATLIVDA--------NE 66 (208)
T ss_dssp HHHHHHHHHHTTCSEEE----EECC-------S--------SCHHHHHHHHHHHC------TTSEEEEEC--------TT
T ss_pred HHHHHHHHHHCCCCEEE----EECC-------C--------CcHHHHHHHHHHhc------cccEEEEec--------cc
Confidence 46677777777888888 4533 1 22466777777765 789999999 67
Q ss_pred eeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeeeCCCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhc
Q 016156 297 NYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIEDPFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQK 376 (394)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iEdPl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~ 376 (394)
.|+ .++++++ .+.+++|++.|||||++++|.+++++++. .+||+.||.. .++.+++++ .
T Consensus 67 ~~s---------------~~~A~~~-~~~l~~~~l~~iEeP~~~~d~~~~~~l~~--~~pi~~~E~~-~~~~~~~~l--~ 125 (208)
T d1jpdx1 67 SWR---------------AEGLAAR-CQLLADLGVAMLEQPLPAQDDAALENFIH--PLPICADESC-HTRSNLKAL--K 125 (208)
T ss_dssp CCC---------------STTHHHH-HHHHHHTTCCEEECCSCTTSCGGGGSSCC--SSCEEESTTC-SSGGGHHHH--B
T ss_pred ccc---------------hhHHHHH-HHHHHhccccccCccCCccCHHHHHhhhc--ccceecCCCc-CCHHHHHHH--h
Confidence 664 4567765 44599999999999999999999999864 4799999975 578899887 4
Q ss_pred CCCcEEeeccccccccCC
Q 016156 377 KSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 377 ~a~d~i~ik~~~~Ggit~ 394 (394)
+++|++++|++++||||+
T Consensus 126 ~~~d~~~~d~~~~GGi~~ 143 (208)
T d1jpdx1 126 GRYEMVNIKLDKTGGLTE 143 (208)
T ss_dssp TTBSEEEECHHHHTSHHH
T ss_pred hccCEEEeCCcccCCHHH
Confidence 789999999999999974
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.2e-14 Score=132.48 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcC---CceeeeC
Q 016156 260 NREGLVLLTDAIEKAGYTGKINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDF---PIVSIED 336 (394)
Q Consensus 260 ~~~~l~~v~~Av~~ag~~gdi~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~---~i~~iEd 336 (394)
+.++++.||+++ +|+.|++|+ |+.| +.++++++ .+.++++ .|.|+||
T Consensus 43 D~~~i~~vr~~~------pd~~L~vDa--------N~~w---------------~~~~A~~~-~~~l~~~~~~~ie~~E~ 92 (221)
T d1r6wa1 43 DGMVVNLLLEAI------PDLHLRLDA--------NRAW---------------TPLKGQQF-AKYVNPDYRDRIAFLEE 92 (221)
T ss_dssp HHHHHHHHHHHC------TTEEEEEEC--------TTCB---------------CHHHHHHH-HHTSCTTTGGGEEEEEC
T ss_pred HHHHHHHHHHHC------CCCeEEEeC--------CCCC---------------CHHHHHHH-HHHHHHhhcCCeeeecc
Confidence 344555555544 789999999 6655 46788875 4457764 6889999
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEeeccccccccCC
Q 016156 337 PFDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLLKVNHLFEIKS 394 (394)
Q Consensus 337 Pl~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~ik~~~~Ggit~ 394 (394)
|++ +.++++++++++++||+.||.. .+.. ...+..+++|++++|++++||||+
T Consensus 93 P~~--~~~~~~~l~~~~~ipIa~dEs~-~~~~--~~~~~~~~~d~v~ik~~~~GGit~ 145 (221)
T d1r6wa1 93 PCK--TRDDSRAFARETGIAIAWDESL-REPD--FAFVAEEGVRAVVIKPTLTGSLEK 145 (221)
T ss_dssp CBS--SHHHHHHHHHHHCCCEEESGGG-GSTT--CCCCCCTTEEEEEECHHHHCCHHH
T ss_pred hhh--hhhHHHHHhhcccchhhhcccc-chhH--HHHHHHhcCcEEEecccccccHHH
Confidence 985 5679999999999999999974 4443 345678899999999999999974
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=96.38 E-value=0.0078 Score=49.24 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=69.7
Q ss_pred ceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 61 PTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 61 ~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
.+|.|.+.++ |.+ .+-|......|.|- || |-|. .+.-+..|++.|+|.|+|+|.......-..+.++.
T Consensus 51 esisV~l~L~dG~va~GDCaaVqySGagG----RD---PLF~---A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~ 120 (160)
T d1kcza2 51 ESISVLLVLEDGQVAHGDCAAVQYSGAGG----RD---PLFL---AKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMT 120 (160)
T ss_dssp CEEEEEEEETTSCEEEEEECCCTTTTSTT----SC---SCCC---HHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCE
T ss_pred cEEEEEEEeCCCCEEEeeehheeecCCCC----CC---cccc---HHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcc
Confidence 4689999999 865 33333333334442 11 3333 34456678999999999999999988888887643
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHh
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHI 174 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lL 174 (394)
.++.++-.....+||.||.|+.|++.+.---+.|
T Consensus 121 --~~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kcza2 121 --VNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVI 154 (160)
T ss_dssp --ETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred --cCCcchhHHHHHhHHHHHHHHHHHHcCCcHHHHh
Confidence 2223455667899999999999998765444433
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=96.22 E-value=0.0087 Score=48.96 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=69.0
Q ss_pred ceEEEEEEEC-Cee-eeeccCCCCCceeeeeeeecCCCCcccchhHHHHHHHhHHhHhhhhcCCCCCCHHHHHHHHHHhc
Q 016156 61 PTVEVDLITD-DLF-RSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVKNINDILGPKLVGVDIRDQAEVDAIMLEID 138 (394)
Q Consensus 61 ~tv~V~V~td-G~~-~~~~~s~~~~G~~Ea~~~~d~~~~~~~g~~~~~a~~~I~~~l~p~LiG~dp~~~e~Id~~l~~~~ 138 (394)
.+|.|.+.++ |.+ .+-|......|.|- || |-|. .+.-+..+++.|+|.|+|+|.....+.-..+.++.
T Consensus 51 esisV~l~L~dG~va~GDCaaVqySGagG----RD---PLF~---A~~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~ 120 (160)
T d1kkoa2 51 ECVSVQLILENGAVAVGDCAAVQYSGAGG----RD---PLFL---AEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLR 120 (160)
T ss_dssp EEEEEEEEETTSCEEEEEECCCTTTTSTT----CC---CCCC---HHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCE
T ss_pred cEEEEEEEeCCCCEEEeeehheeecCCCC----CC---cccc---HHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcc
Confidence 3688999999 865 33333333334442 11 2333 34456678999999999999999988877777542
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhHhhcCChhHHHh
Q 016156 139 GTPNKSKIGANAILGVSLSVCRAGAGAKGVPLYKHI 174 (394)
Q Consensus 139 ~~~~~~~ig~~A~sAvdiAlwda~ak~~g~PLy~lL 174 (394)
.++.++-.....+||.||.|+.|++.+.---+.+
T Consensus 121 --~~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kkoa2 121 --IDGNLLHTAVRYGLSQALLDATALASGRLKTEVV 154 (160)
T ss_dssp --ETTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred --cCCCchhHHHHHhHHHHHHHHHHHHcCccHHHHH
Confidence 2223455667899999999999998765444433
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.2 Score=46.02 Aligned_cols=87 Identities=11% Similarity=0.169 Sum_probs=55.8
Q ss_pred CcEEEEecccccccccCCeeeccCCCCCCCCCcccCHHHHHHHHHHhhhcCCceeee--------------CCCCCCCHH
Q 016156 279 KINIGMDVAASEFFTKDGNYDLNFKKQPNDGAHVLSAQSLGDLYKEFVRDFPIVSIE--------------DPFDQDDWS 344 (394)
Q Consensus 279 di~l~iD~aa~~~~~~ng~Y~~~~~~~~~~~~~~~t~~e~i~~~~~~l~~~~i~~iE--------------dPl~~~D~~ 344 (394)
|+.+++-..+.++.+ + ..+.++++++ .+.+++.++.++. .|++...+.
T Consensus 208 d~~v~~R~s~~d~~~--~---------------g~~~~~~~~~-~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~ 269 (330)
T d1ps9a1 208 DFIIIYRLSMLDLVE--D---------------GGTFAETVEL-AQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFS 269 (330)
T ss_dssp SSEEEEEEEEECCST--T---------------CCCHHHHHHH-HHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTH
T ss_pred CceeEeccccccccc--C---------------CCCHHHHHHH-HHHHHHhhhhhhhcccccccccccccCCCCcchhHH
Confidence 777777775554442 1 2356777775 4456765554443 233333333
Q ss_pred HH-HHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 345 SW-ASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 345 ~~-~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+ +++++.+++||++--. +++++...++|+.+.||.+-+
T Consensus 270 ~~~~~ik~~~~~pvi~~G~-i~~~~~ae~~l~~g~~D~V~~ 309 (330)
T d1ps9a1 270 WVTRKLKGHVSLPLVTTNR-INDPQVADDILSRGDADMVSM 309 (330)
T ss_dssp HHHHHHTTSCSSCEEECSS-CCSHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHhhCCceEEEeCC-CCCHHHHHHHHHCCCcchhHh
Confidence 33 5666677788775543 467999999999999998865
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=84.19 E-value=4.6 Score=36.40 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHhhhcCCceeee-------CC---C-CCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcE
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIE-------DP---F-DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNG 381 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iE-------dP---l-~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~ 381 (394)
.+.++.+++ .+++++.++.+++ .| . +....+--+++++.+++||++--. +++++..+++|+.+.||.
T Consensus 225 ~~~~~~~~~-~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~-i~~~~~ae~~l~~g~~D~ 302 (337)
T d1z41a1 225 LDIADHIGF-AKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGM-ITDGSMAEEILQNGRADL 302 (337)
T ss_dssp CCHHHHHHH-HHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSS-CCSHHHHHHHHHTTSCSE
T ss_pred cchhhhHHH-HHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCC-cCCHHHHHHHHHCCCcce
Confidence 356788874 5567777755433 12 1 123445557888888999775433 467999999999999998
Q ss_pred Eee
Q 016156 382 LLL 384 (394)
Q Consensus 382 i~i 384 (394)
+.+
T Consensus 303 V~~ 305 (337)
T d1z41a1 303 IFI 305 (337)
T ss_dssp EEE
T ss_pred ehh
Confidence 764
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=82.85 E-value=5.7 Score=36.11 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHHhhhcCCceeeeCC------CCCCCHHHHHHHHhhcCCeEEecCccccCHHHHHHHHhcCCCcEEee
Q 016156 313 LSAQSLGDLYKEFVRDFPIVSIEDP------FDQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKSCNGLLL 384 (394)
Q Consensus 313 ~t~~e~i~~~~~~l~~~~i~~iEdP------l~~~D~~~~~~L~~~~~i~I~gde~~~~~~~~~~~~i~~~a~d~i~i 384 (394)
.+.++++.+ .+.+++.++.||+=- -.+....-.+++++.+++|+++.-.. +++..+++|+.+.||.+-+
T Consensus 247 ~~~~e~~~~-~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~--t~~~ae~~l~~G~~DlV~~ 321 (363)
T d1vyra_ 247 NEEADALYL-IEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAY--TAEKAEDLIGKGLIDAVAF 321 (363)
T ss_dssp THHHHHHHH-HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC--CHHHHHHHHHTTSCSEEEE
T ss_pred cchHHHHHH-HHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCC--CHHHHHHHHHCCCcceehh
Confidence 356788875 445788887776422 12334455577777888777655432 6999999999999999864
|