Citrus Sinensis ID: 016206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEcccccEEEccEccHHccccccccHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccHcccccHHHHcccHHHHHHHHHHHHHcccHHccccccc
Coil and Loop (DISEMBL)
MATAKLLLLQLRRcsyyshplsraplchlfnapiptltqtqtpqrafyfrphvhlyhsgsaddssvggdgvgdrysevpipvetvNLSERVIESIageesslpVRALISFLdtyhdftgfpwwTIIVSSTVALRIALLPLIVLQLKKIQRIAEllprlpppfppplsgkrfvDQISLFRRekraagcpSLLWFIASFAIQVPCFLVGVTSIrrmsldghpgfdcggiwwfqnlteyphgvlgsIFPVLMAGLHYTNVQLSfgasslgkeNGLLGLLAKYYKSYLNLmtlplfflgyyipqgslVYWVTNSSFSIVQQLALkhpasrtmlglpdkvvpaaarkpeeidTLETTLESPAKQLKISVENLTPKELIALSVKFLskgdkerpipllq
Flexible Loop (DISEMBL)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSgsaddssvggDGVGDRYSEVPIPVETVNLSERVIESiageesslpVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPrlpppfppplsgKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVpaaarkpeeidtlettlespakqlkisvenltpkELIALSVkflskgdkerpipllq
Low Complexity Region (SEG)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNApiptltqtqtpqRAFYFRPHVHLYHsgsaddssvggdgvgdRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEllprlpppfppplSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQ
Disordered region (IsUnstruct)
****KLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHS**************DRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP*****LSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG************************************LTPKELIALSVKF**************
Disordered Region (DISOPRED)
*****************************************************************************VPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQ*************************************CPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNV**********************YKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG**********************************************************IPLL*
Disordered Region (DISEMBL)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSG*********DGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGD*********
Disordered Region (DISPRO)
****KLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSL*KENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD*********************S***QLKISVENLTPKELIALSVKFLSKGDKERP**LLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q0WUC5	566	ALBINO3-like protein 3, m	yes	no	0.727	0.505	0.539	1e-85
Q8L718	525	ALBINO3-like protein 2, c	no	no	0.765	0.573	0.533	1e-83
Q42191	429	Mitochondrial inner membr	no	no	0.577	0.529	0.284	1e-18
Q3SYV3	441	Mitochondrial inner membr	yes	no	0.618	0.551	0.266	5e-16
Q15070	435	Mitochondrial inner membr	no	no	0.605	0.547	0.255	1e-15
Q8BGA9	433	Mitochondrial inner membr	yes	no	0.633	0.575	0.261	3e-15
O14300	374	Mitochondrial inner membr	yes	no	0.524	0.550	0.267	1e-14
Q9SKD3	431	Mitochondrial inner membr	no	no	0.651	0.593	0.273	3e-14
O43092	409	Mitochondrial inner membr	no	no	0.580	0.557	0.260	5e-12
O13375	371	Mitochondrial inner membr	N/A	no	0.529	0.560	0.232	5e-08

>sp|Q0WUC5|ALB33_ARATH ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1

 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 204/289 (70%), Gaps = 3/289 (1%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP  +PP  
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
             WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301

Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
           +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQ 393
            +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLR 410

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L718|ALB32_ARATH ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=2

 Score =  310 bits (794), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 220/302 (72%), Gaps = 1/302 (0%)

Query: 93  ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
           E I  ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69  EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128

Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
           ELLP+LP P P   + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188

Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
           +MSLDGHPGFD GG+ WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248

Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
            GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LGL 
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308

Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
            +   P      E  +++   ++S +K+  +S++ LTP+EL++LSV+ LSKGDKE  I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368

Query: 392 LQ 393
           L+
Sbjct: 369 LR 370

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42191|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 19/246 (7%)

Query: 94  SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
           ++A  +S  P+ AL   +D  H FTGF WW  IV +T+ +R + +PL++ Q+K   ++A 
Sbjct: 124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183

Query: 154 LLPRLPPPFPPPLSGKRFVDQISLFRREKRAA------GCPSLLWFIASFAIQVPCFLVG 207
           + PRL       +  K  +D +++   +K+        G          F IQ P F+  
Sbjct: 184 MRPRL-ESIREEMQNKG-MDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMF-IQGPLFICF 240

Query: 208 VTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLG 267
             +IR M+ +  P F  GG  WF +LT  P  +   I PV+        V+ +   +  G
Sbjct: 241 FLAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVITGLTFLITVECN---AQEG 293

Query: 268 KENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327
            E   +    K       L+T+P   +    PQ    YW+T++ FS++  L +K P  + 
Sbjct: 294 MEGNPMAGTVKTVCRVFALLTVP---MTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKK 350

Query: 328 MLGLPD 333
           ML +PD
Sbjct: 351 MLRIPD 356

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for activity and assembly of cytochrome c oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3SYV3|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L PE=2 SV=1

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 23/266 (8%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
           G  S  PV  + + L+  H   G PWW  I + TV  R  + PLIV   ++  +I   LP
Sbjct: 115 GLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLP 174

Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFA------IQVPCFLVGVTS 210
            +   F   +   +     + F R             I  F        Q P F+    +
Sbjct: 175 EIQK-FSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIA 233

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
           +R M+    P    GG+WWFQ+LT   P  VL  +    M           +G   LG E
Sbjct: 234 LREMANLPVPSLQTGGLWWFQDLTLSDPIYVLPLVVTATM-----------WGVLELGAE 282

Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
            G+     ++ ++++ LM L +  +  + P    +YW++++ FS+ Q   L+ PA RT+L
Sbjct: 283 TGMQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVL 342

Query: 330 GLPDKVVPAAARKPEEIDTLETTLES 355
            +P +VV      P+++   E  L+S
Sbjct: 343 KIPQRVV----HDPDKLAPREGFLKS 364

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Bos taurus (taxid: 9913)

>sp|Q15070|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 60/298 (20%)

Query: 83  ETVNLSERVIESIAGE---ESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
           ET ++ +   E    E    S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct: 98  ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157

Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAI 199
           LIV   ++  RI   LP +          ++F  +I    RE + AG   + ++ AS  +
Sbjct: 158 LIVTGQREAARIHNHLPEI----------QKFSSRI----REAKLAG-DHIEYYKASSEM 202

Query: 200 --------------------QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTE---- 235
                               Q P F+    ++R M+    P    GG+WWFQ+LT     
Sbjct: 203 ALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPI 262

Query: 236 --YPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFF 293
              P  V  +++ VL                 LG E G+     ++ ++ + +M L    
Sbjct: 263 YILPLAVTATMWAVL----------------ELGAETGVQSSDLQWMRNVIRMMPLITLP 306

Query: 294 LGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
           +  + P    +YW++++ FS+VQ   L+ PA RT+L +P +VV    + P     LE+
Sbjct: 307 ITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Homo sapiens (taxid: 9606)

>sp|Q8BGA9|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 23/272 (8%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
           G  S  PV  + + L+  H   G PWW  I + TV  R  + PLIV   ++  +I   +P
Sbjct: 110 GLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMP 169

Query: 157 RLPPPFPPPLSGKRFVDQISLFR------REKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
            +          K   DQ   ++      R ++      L   I     Q P F+    +
Sbjct: 170 EMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLT-QAPVFISFFIA 228

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
           +R M+    P    GG+WWFQ+LT   P  VL    P+++    +  ++L       G E
Sbjct: 229 LREMANLPVPSLQTGGLWWFQDLTVSDPIYVL----PLVVTATMWCVLEL-------GAE 277

Query: 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
            G+     ++ ++ + +M L +  +  + P    +YW++++ FS+ Q   L+ PA RT+L
Sbjct: 278 TGVQSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVRTVL 337

Query: 330 GLPDKVVPAAARKPEEIDTLETTLESPAKQLK 361
            +P +VV      P+++   E  L+S  K  K
Sbjct: 338 KIPQRVV----HDPDKLPPREGFLKSFKKGWK 365

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome oxidase. Required for the correct biogenesis of ATP synthase and complex I in mitochondria.

Mus musculus (taxid: 10090)

>sp|O14300|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 113 TYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFV 172
           T + + G PWW  I+ +T+ +R+AL P+++   +   +++ + P +        + K   
Sbjct: 77  TINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKKELEAIKTAKLDN 136

Query: 173 DQISLFRREKRAAGCPSLLWFIASFAI------QVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           DQ++L +      G   L   +  FAI      Q   F     +IR+MS     GF  GG
Sbjct: 137 DQLALNQHSIALRGI-YLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSVDGFTTGG 195

Query: 227 IWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFG--ASSLGKENGLLGLLAKYYKSY 283
           + WF++L+   P+ +L    P++ AGL ++ +Q++    AS++G            ++++
Sbjct: 196 LAWFKDLSIPDPYCIL----PIINAGLMFSGMQMNRANTASTIGNSTN--------WRTF 243

Query: 284 LNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331
             L  L    L   +P    +YW+ +S F+IVQ   LK+P  R+ LG 
Sbjct: 244 FFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGF 291

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. Not essential for viability, while oxa102 is essential. When both genes are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SKD3|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 26/282 (9%)

Query: 94  SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
           +IA  +S+ PV AL   +D  H FTG  WW  I  +TV +R   +P+++ QLK   ++  
Sbjct: 127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186

Query: 154 LLPRL---------PPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCF 204
           L P+L             P  ++  +   Q+ LF+        P     +    IQ P F
Sbjct: 187 LRPQLEELRQEMSTKAQDPEAMAEGQRRMQL-LFKEHGVTPFTP-----LKGLIIQGPIF 240

Query: 205 LVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGAS 264
           +    +IR M+ +  P F  GG  WF +LT         I P+L A      V+ +    
Sbjct: 241 ISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTY---ILPLLTAVTFLIMVESNMQEG 296

Query: 265 SLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPA 324
             G  N + G + K+ +  +  +++P+      I +    YW+T++ F++V  L L+ P 
Sbjct: 297 LEG--NPVAGTMKKFSR-IIAFLSIPVLI---GIEKALFCYWLTSNLFTLVYGLTLRRPD 350

Query: 325 SRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVEN 366
            R +L LPD VV ++ R+P     L  +   P  Q  ++ E 
Sbjct: 351 VRKLLNLPD-VVNSSTRQPSPSSPLPFSFAEPKDQSVVAQEK 391

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. May participate in the activity and assembly of cytochrome oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 60/288 (20%)

Query: 88  SERVI--------ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
           SE+V+         S+    S LP   L + L+T H ++G PWW  I +  VA+RIA+ P
Sbjct: 73  SEKVVYTPSLPLSSSVLASFSFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFP 132

Query: 140 LIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAI 199
           +++  +K   ++A + P++              + +S+  + K  A   S L   A+  I
Sbjct: 133 IMLKMMKTSAKLAIINPKV-------------AEHMSVLSKAK--AEGNSELMMQATTQI 177

Query: 200 QVPCFLVGVTSIRRMSLDGHP-----------------------GFDCGGIWWFQNLTEY 236
           Q    L  V ++  ++L   P                       GF  GG WW  +L++ 
Sbjct: 178 QN---LYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGVPVEGFTDGGFWWVNDLSQ- 233

Query: 237 PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGY 296
           P  +   IFPV    L   N++L  G+ +   +  +   + K+++ +L L + PLF + +
Sbjct: 234 PDPL--HIFPVANGLLMLLNIEL--GSETGSNKVAMSPSMKKFFR-FLCLAS-PLFTMNF 287

Query: 297 YIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPE 344
             P    +YW  ++ FS+ Q   L+    R  LGLP+  VP+A   P 
Sbjct: 288 --PMAIFMYWFPSNVFSVFQGAFLRSSTIRHKLGLPE--VPSAMPVPN 331

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase. It is essential for viability while oxa101 is not. When both are deleted the cell is non-viable, suggesting that oxa101 act as a back-up for oxa102.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O13375|OXA1_SACSE Mitochondrial inner membrane protein OXA1 OS=Saccharomyces servazzii GN=OXA1 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 24/232 (10%)

Query: 111 LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKR 170
           L+  H +TG PWW  I + T+ +R+ + P+ V     I + + + P++       ++   
Sbjct: 93  LEYVHVYTGLPWWGTICTVTILVRLLMFPIYVKSSDTIAKNSRIKPQMDKVTKELMATTD 152

Query: 171 FVD--QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW 228
             +  +I++ RR+  +       W  A   +Q+P  +    ++R M+     GF   GI 
Sbjct: 153 LAEGQKIAVRRRKLLSENGIKNRWLAAPM-LQLPIAIGFFNALRSMANFPVDGFANQGIL 211

Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG---LLGLLAKYYKSYLN 285
           WF +LT           P L  GL +    +    S LG E G     G + +++     
Sbjct: 212 WFHDLTLSD--------PYL--GLQFITAAVLMSFSRLGGETGAQQFSGPMKRFF----- 256

Query: 286 LMTLPLFFL--GYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKV 335
            + LPL  +     +    ++Y+  N +FS++Q L L++   R  L + + V
Sbjct: 257 -IILPLVSIPATMNLSTSVVLYFAINGTFSVLQTLVLRNKWFRKKLNIAEVV 307

Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for the activity and assembly of cytochrome c oxidase.

Saccharomyces servazzii (taxid: 27293)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
255543108	548	cytochrome oxidase biogenesis protein, p	0.974	0.698	0.542	1e-102
449442253	573	PREDICTED: ALBINO3-like protein 3, mitoc	0.913	0.626	0.544	1e-100
225431027	572	PREDICTED: ALBINO3-like protein 2, chlor	0.760	0.522	0.589	3e-96
297818908	540	binding protein [Arabidopsis lyrata subs	0.964	0.701	0.455	4e-85
145339114	566	membrane insertion protein and OxaA/YidC	0.727	0.505	0.539	7e-84
224103345	499	inner membrane protein [Populus trichoca	0.903	0.711	0.483	2e-82
42562960	525	ALBINO3-like protein 2 [Arabidopsis thal	0.765	0.573	0.533	7e-82
297837823	524	hypothetical protein ARALYDRAFT_475515 [	0.755	0.566	0.530	6e-79
357507673	595	ALBINO3-like protein [Medicago truncatul	0.903	0.596	0.405	2e-75
242094868	593	hypothetical protein SORBIDRAFT_10g00486	0.745	0.494	0.430	1e-72

>gi|255543108|ref|XP_002512617.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi|223548578|gb|EEF50069.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/402 (54%), Positives = 279/402 (69%), Gaps = 19/402 (4%)

Query: 1   MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYH--- 57
           MA  +LL   +RR    S PL       L N   P L  +Q+P  +  F   +  +H   
Sbjct: 1   MAVPRLLFSHIRR----SRPLCSLSYWRLSN---PNLNCSQSPTPSHKFANSLAAFHFLD 53

Query: 58  --SGSADDSSVGGDGVGDRYSE----VPIPVETVNLSERVIESIAGEESSLPVRALISFL 111
             S S+  +  G D + +  +E    V   +ETV     +  +   EES LPVR L+S L
Sbjct: 54  SRSFSSPSNHDGSDFLANSAAEPSSIVSDVIETVG---NITTNGGNEESILPVRVLVSVL 110

Query: 112 DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRF 171
           D +HD +G PWW +I S+TVA+R+ L PL+VLQL K+++I+EL P+LPPPFPPPLSGK F
Sbjct: 111 DEFHDLSGLPWWLVIASATVAMRVTLFPLLVLQLHKLKKISELFPKLPPPFPPPLSGKSF 170

Query: 172 VDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQ 231
           VDQISLF +E+RA GCPS LWF+A  + QVPCFL+ +TSIRRMSLD HPGFDCGG  WFQ
Sbjct: 171 VDQISLFHKERRALGCPSYLWFLAYVSAQVPCFLLWMTSIRRMSLDHHPGFDCGGTLWFQ 230

Query: 232 NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPL 291
           NLTEYPHG+ G IFP+L+A LHY N+QL+F   S+ K  GLL LLAKYYK YL+L+TLPL
Sbjct: 231 NLTEYPHGIAGPIFPLLIACLHYINIQLAFEKFSVQKTTGLLSLLAKYYKLYLDLLTLPL 290

Query: 292 FFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
           FF+GY IPQGSLVYWVTNSS S++QQ++LKHPA R  LGLP K  PAA+   EE+ + + 
Sbjct: 291 FFIGYCIPQGSLVYWVTNSSLSVIQQMSLKHPAVRAKLGLPAKDAPAASADSEEMGSPQA 350

Query: 352 TLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQ 393
           +L++P+K  K+ VENL PK+L+A+SV+ LS   +ER IPLLQ
Sbjct: 351 SLDAPSKNGKVPVENLNPKQLLAISVQLLSNQHRERAIPLLQ 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442253|ref|XP_004138896.1| PREDICTED: ALBINO3-like protein 3, mitochondrial-like [Cucumis sativus]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/373 (54%), Positives = 261/373 (69%), Gaps = 14/373 (3%)

Query: 28  HLFNAPIPTLTQ-TQTPQRAFYFRPHV-----HLYHSGSADDSSVGGDGVGDRYSEVPIP 81
           H F+  I +L+  T    R+F+ R +       + H G  + S +  D  G +       
Sbjct: 51  HRFDPHISSLSAFTAFSSRSFWTRSNDDSEFDRIAHYG-VESSHLSNDDTGIQ------D 103

Query: 82  VETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLI 141
           +E   + E VI + A E S LP++ L S LD +H +TG PWW +I SST+ALR  LLP++
Sbjct: 104 LELGGVVEEVIGATAVENSILPIQQLTSILDGFHQYTGMPWWAVIASSTLALRFTLLPIL 163

Query: 142 VLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQV 201
           ++QL K++RI EL P+LPPP PPPLSG+ ++DQISLFR+E++A GCPS LWF A F IQV
Sbjct: 164 IVQLNKLKRIGELFPKLPPPLPPPLSGRSYIDQISLFRKERKAIGCPSFLWFAAYFFIQV 223

Query: 202 PCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSF 261
           PCFL+ + +IR+MSLD +PGFD GG  WFQNLTEYPHGV G IFP L+A LH+ NVQLSF
Sbjct: 224 PCFLLWMVTIRKMSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSF 283

Query: 262 GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321
             SSL KE G++G+LAKYYK YLNL+T+PLFF+GY IPQGSLVYWVTNSSF+ +QQL L+
Sbjct: 284 RKSSLEKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTLQ 343

Query: 322 HPASRTMLGLPDKVVPAAARKPEEIDT-LETTLESPAKQLKISVENLTPKELIALSVKFL 380
           HPA R+ LGLP +  P       E +   +  LE+  K  KISVE L+PKEL+ALSV+ L
Sbjct: 344 HPAVRSKLGLPSRDAPVGTTTLRETNNPGKIPLETTTKWKKISVEKLSPKELLALSVQLL 403

Query: 381 SKGDKERPIPLLQ 393
           SKG KE+ IPLL+
Sbjct: 404 SKGQKEKAIPLLR 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431027|ref|XP_002273357.1| PREDICTED: ALBINO3-like protein 2, chloroplastic [Vitis vinifera] gi|297735304|emb|CBI17666.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/329 (58%), Positives = 240/329 (72%), Gaps = 30/329 (9%)

Query: 89  ERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKI 148
           E  IESI       PVR L+S LD YHD TG+PWW II SST+ALRIAL P++VLQLKK+
Sbjct: 95  ESAIESIP------PVRFLVSLLDGYHDVTGWPWWIIIASSTLALRIALFPILVLQLKKM 148

Query: 149 QRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGV 208
           +RIAELLP+LPPP PPPLSG+ + DQISLFR+EKRA GCPS LWF+AS + QVPCF++ +
Sbjct: 149 KRIAELLPKLPPPLPPPLSGRSYFDQISLFRKEKRAIGCPSFLWFLASLSTQVPCFILWM 208

Query: 209 TSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268
            SIR MSLD HPGFD GG  WFQNLTE+P+GVLG IFP+L++GLH+ NVQ+SF  SS+G+
Sbjct: 209 MSIRWMSLDHHPGFDSGGALWFQNLTEFPNGVLGPIFPILISGLHFINVQISFSTSSVGQ 268

Query: 269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
             GLLGLLAKYYK YL ++T+P+FF G+YIPQGSLVYWVTNSS S +QQL ++HP  R  
Sbjct: 269 VPGLLGLLAKYYKFYLEILTVPIFFTGFYIPQGSLVYWVTNSSLSAIQQLTIRHPTVRAK 328

Query: 329 LGLPDKVVPAAARK--------------------PEEIDTLE----TTLESPAKQLKISV 364
           LGLPDK  P AA K                    PE +   E     ++    KQ +I +
Sbjct: 329 LGLPDKQAPNAAAKEMHTPGEGSLGPPTKQQYISPESVSPQELPGIKSMYPRRKQHQIPI 388

Query: 365 ENLTPKELIALSVKFLSKGDKERPIPLLQ 393
           E+L+P++LIALSV+ LSKGDK+  IP ++
Sbjct: 389 ESLSPRDLIALSVQILSKGDKDGAIPFIR 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818908|ref|XP_002877337.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323175|gb|EFH53596.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/397 (45%), Positives = 243/397 (61%), Gaps = 18/397 (4%)

Query: 1   MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGS 60
           MA  ++LL  LRR     H  S     H+     P++T      R F   P +    +  
Sbjct: 1   MAFRRVLLSNLRRSH---HTCSSLSPHHISATTHPSITLGLFQSRFFSTPPDLDSELTRL 57

Query: 61  ADDS--SVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFT 118
            DDS    G +G G  +S+         LS+ +I +       L  + +IS LD+YHD T
Sbjct: 58  RDDSVTGFGTNGHGLEFSD---------LSQDLIGAGVSNYDYL-TQPVISLLDSYHDLT 107

Query: 119 GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLF 178
           G PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LPP +PP  SG+  +DQ+ LF
Sbjct: 108 GLPWWVVIATSTVAFRTALLPILILQRKQTRRISQFLPKLPPFWPPEGSGRSVIDQLKLF 167

Query: 179 RREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH 238
           R+E+R +GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG  WFQNLTE P+
Sbjct: 168 RKERRDSGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGGALWFQNLTEVPN 227

Query: 239 GVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYI 298
           G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK +K +LN +T  L+ L + +
Sbjct: 228 GLYGPLFPFLIAGLHYTNTQITFTASSVHKVDK-FAELAKTFKMFLNFLTFALYGLSFQM 286

Query: 299 PQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEEIDTLETTL-ESP 356
           PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P   +  E  L +S 
Sbjct: 287 PQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPILTNINEAKLTDSS 346

Query: 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQ 393
           +K   IS  NLTPKEL+ALS K+LS G+K++ IPLL+
Sbjct: 347 SKGRLISGHNLTPKELVALSAKYLSGGNKDKSIPLLR 383

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145339114|ref|NP_190023.2| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|122242629|sp|Q0WUC5.1|ALB33_ARATH RecName: Full=ALBINO3-like protein 3, mitochondrial; Flags: Precursor gi|110742724|dbj|BAE99273.1| hypothetical protein [Arabidopsis thaliana] gi|332644376|gb|AEE77897.1| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 204/289 (70%), Gaps = 3/289 (1%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP  +PP  
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
             WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301

Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
           +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQ 393
            +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLR 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103345|ref|XP_002313020.1| inner membrane protein [Populus trichocarpa] gi|222849428|gb|EEE86975.1| inner membrane protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 193/399 (48%), Positives = 235/399 (58%), Gaps = 44/399 (11%)

Query: 1   MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGS 60
           MAT  LLL  LRR    S  LSR PL +    P P  + T  P  A   R  +  ++  S
Sbjct: 1   MATRSLLLSTLRRSRPIS-TLSR-PLTNSSPGPNPN-SLTSQPSNAISSRNSLASFNFPS 57

Query: 61  ADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGF 120
               S         + E   PV T    + V+  I      LPV ++I  LD+YHD TG 
Sbjct: 58  CRSLSTRTASESINFEEFADPVST-ETEDGVVNGI------LPVDSMIWLLDSYHDLTGL 110

Query: 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRR 180
           PWW II SST+A+R+ L PL VLQ+ KI++I+    +LPP FPPPLSG+ +++QISLFR 
Sbjct: 111 PWWIIIASSTLAMRLTLFPLHVLQMHKIKKISRSFSKLPPLFPPPLSGRSYIEQISLFRN 170

Query: 181 EKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGV 240
           E+RA GCPS LWF+A  ++Q+PCFL+ +TSIRRM LD HPGFDCGG  WFQNLTE PHGV
Sbjct: 171 ERRAIGCPSYLWFLAFLSVQIPCFLLWMTSIRRMCLDNHPGFDCGGALWFQNLTELPHGV 230

Query: 241 LGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ 300
           LG IFP L+AGLH  NV                     YY+ YLN M LPLFF+GY IPQ
Sbjct: 231 LGPIFPFLIAGLHGVNVH--------------------YYRKYLNFMMLPLFFIGYCIPQ 270

Query: 301 GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQL 360
           GSLVYWVTNSS + +QQ++LK P  R  LGL DK  P A     E+   E          
Sbjct: 271 GSLVYWVTNSSLTAIQQVSLKLPVVRAKLGLLDKDFPKAPALSAEMVAHELR-------- 322

Query: 361 KISVENLTPKEL------IALSVKFLSKGDKERPIPLLQ 393
           K+S ENL+P EL      + LSVK LS G + R IPLLQ
Sbjct: 323 KVSPENLSPHELLVVSGAVQLSVKLLSSGHRARAIPLLQ 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562960|ref|NP_176688.3| ALBINO3-like protein 2 [Arabidopsis thaliana] gi|38372237|sp|Q8L718.2|ALB32_ARATH RecName: Full=ALBINO3-like protein 2, chloroplastic; Short=Ath5; Flags: Precursor gi|6227006|gb|AAF06042.1|AC009360_7 F16G16.8 [Arabidopsis thaliana] gi|332196206|gb|AEE34327.1| ALBINO3-like protein 2 [Arabidopsis thaliana]

 Score =  310 bits (794), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 220/302 (72%), Gaps = 1/302 (0%)

Query: 93  ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
           E I  ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct: 69  EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128

Query: 153 ELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
           ELLP+LP P P   + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR
Sbjct: 129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188

Query: 213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
           +MSLDGHPGFD GG+ WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL
Sbjct: 189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248

Query: 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
            GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LGL 
Sbjct: 249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308

Query: 333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
            +   P      E  +++   ++S +K+  +S++ LTP+EL++LSV+ LSKGDKE  I L
Sbjct: 309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368

Query: 392 LQ 393
           L+
Sbjct: 369 LR 370

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837823|ref|XP_002886793.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata] gi|297332634|gb|EFH63052.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata]

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 158/298 (53%), Positives = 213/298 (71%), Gaps = 1/298 (0%)

Query: 97  GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLP 156
            ++SSLPV  ++ FLD +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+ELLP
Sbjct: 72  NDDSSLPVLFVVDFLDGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTISELLP 131

Query: 157 RLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSL 216
           +LP P P   + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR+MSL
Sbjct: 132 QLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIRKMSL 191

Query: 217 DGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLL 276
           DGHPGFD GG  WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL GLL
Sbjct: 192 DGHPGFDSGGALWFQNLSDLPVGSFGPVFPILIAAFHYINIQISFDTSTIRQTTGLTGLL 251

Query: 277 AKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG-LPDKV 335
            +YYK YL ++ +PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LG L    
Sbjct: 252 MRYYKLYLEILGVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPRVGAKLGLLTQGA 311

Query: 336 VPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQ 393
            P+     E  +++   ++S  K+  +S++ LTP+EL++LSV+ LSK DKE  I LL+
Sbjct: 312 SPSVEHSMEISESVIKYVDSDLKEHTLSLQTLTPEELLSLSVQVLSKDDKETSIQLLR 369

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507673|ref|XP_003624125.1| ALBINO3-like protein [Medicago truncatula] gi|355499140|gb|AES80343.1| ALBINO3-like protein [Medicago truncatula]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/437 (40%), Positives = 241/437 (55%), Gaps = 82/437 (18%)

Query: 21  LSRAPLCHLF--NAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEV 78
           +SR P  H F  ++P PT         AF    H   + +GS++D  +  D +G    + 
Sbjct: 22  MSRIPASHPFTPHSPTPTFLD------AF----HTRAFSTGSSNDE-LDTDSLG---LDS 67

Query: 79  PIPVETVNLSERVIESIAGEES--SLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIA 136
           P+  E +    + I   AG E     PVRA+IS L+++HD TGFPWW  I+SST+ALR+ 
Sbjct: 68  PVHSEIL----KTIADSAGSEDIPVFPVRAVISLLESFHDLTGFPWWLTIISSTLALRLV 123

Query: 137 LLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIAS 196
           LL  ++  L K++RI+E +P+LPPPFPPP SGK ++ Q+  F  +++A GCPS  W +  
Sbjct: 124 LLCPLIFTLHKLKRISEFVPKLPPPFPPPFSGKSYIRQMRFFEEKRKAVGCPSYAWPLLP 183

Query: 197 FAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256
           F +QVPCF V + SIRRMSLDGHPGFDCGG  WFQNLTE+ HG  G  FP LMAGLHY  
Sbjct: 184 FIVQVPCFFVWMFSIRRMSLDGHPGFDCGGALWFQNLTEFSHGYSGFTFPFLMAGLHYVI 243

Query: 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQ---------------- 300
           VQ++F    + +   +  LL+KYYK YL+ +TLP+ F+G+ IPQ                
Sbjct: 244 VQVTFKKPMIEETQDIFDLLSKYYKRYLDFLTLPIAFIGFSIPQGTFLDYNVAQALKGHL 303

Query: 301 ----------------------GSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPA 338
                                 GS +YW+TNSS ++VQ  AL++PA+   LGL DK    
Sbjct: 304 LKPNGPESIKSTSYPLSLSLTHGSQLYWITNSSLTLVQHFALRNPAALAKLGLLDKNRQI 363

Query: 339 AARK----------------------PEEIDTLETTLESPAKQLKISVENLTPKELIALS 376
           AA K                       E I   +  L+SP K  KI +EN++  EL  L+
Sbjct: 364 AASKETDASKTPPLLGVQDNSTTAATKETISPEKNPLDSPEKWHKIPIENMSSVELTTLA 423

Query: 377 VKFLSKGDKERPIPLLQ 393
           V FL+  DK+  IPLL+
Sbjct: 424 VPFLNSSDKDSAIPLLK 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094868|ref|XP_002437924.1| hypothetical protein SORBIDRAFT_10g004860 [Sorghum bicolor] gi|241916147|gb|EER89291.1| hypothetical protein SORBIDRAFT_10g004860 [Sorghum bicolor]

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 137/318 (43%), Positives = 196/318 (61%), Gaps = 25/318 (7%)

Query: 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP 159
           S L V  ++  +D +H  TG PWW  I  STVA+R+ +LP +++QL+K  +I E+  RL 
Sbjct: 133 SELAVSTILDLMDGFHSLTGLPWWMTISFSTVAMRLLILPALIVQLQKTAKIGEVFRRLS 192

Query: 160 PPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH 219
              P P  G  F ++ +LF+++K+  GCPS LW  A F++Q PCF++ + SIR M L+ H
Sbjct: 193 TSLPTPQPGNNFREEYALFQKKKKELGCPSFLWNFAYFSVQFPCFILWMMSIRSMCLNNH 252

Query: 220 PGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKY 279
           PGFD GGI WF NLTE+PHG LG  FP+L+AGLHY NVQ+SF  S +    G+ GLLAKY
Sbjct: 253 PGFDNGGILWFHNLTEFPHGTLGPTFPILVAGLHYLNVQISFQGSQIKDHPGIFGLLAKY 312

Query: 280 YKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAA 339
           Y+ YL+++T+PLF + Y +PQGSLVYW TN  FS+ QQL L++ A R +LGLPD      
Sbjct: 313 YRIYLDVLTIPLFLIAYVVPQGSLVYWTTNGLFSVAQQLFLRNDAFRKLLGLPDTRAHVG 372

Query: 340 ARKPEEIDTLETTLESPAKQLK----------------ISVENL--------TPKELIAL 375
            R  E+     T LE    Q+K                 +VE+L        +P+EL+  
Sbjct: 373 YRA-EKSPLERTQLEDADLQMKSMSSDKGTASESTTPNFAVESLEGNISVSSSPEELLEQ 431

Query: 376 SVKFLSKGDKERPIPLLQ 393
           ++ +L  G +++ +PL++
Sbjct: 432 ALHYLGTGCRDQALPLIR 449

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2014973	525	AT1G65080 [Arabidopsis thalian	0.765	0.573	0.509	5.2e-81
TAIR|locus:2100172	566	AT3G44370 [Arabidopsis thalian	0.727	0.505	0.519	1.5e-74
TAIR|locus:2174068	429	OXA1 "homolog of yeast oxidase	0.664	0.608	0.260	1.6e-18
ZFIN|ZDB-GENE-071004-49	469	oxa1l "oxidase (cytochrome c)	0.585	0.490	0.282	1.4e-17
TAIR|locus:2039134	431	OXA1L "AT2G46470" [Arabidopsis	0.646	0.589	0.269	7.8e-17
UNIPROTKB|E7EVY0	408	OXA1L "Mitochondrial inner mem	0.676	0.651	0.262	2e-16
UNIPROTKB|Q15070	435	OXA1L "Mitochondrial inner mem	0.656	0.593	0.262	4.1e-15
UNIPROTKB|J3KNA0	495	OXA1L "Mitochondrial inner mem	0.656	0.521	0.262	5.8e-15
RGD|1585024	433	Oxa1l "oxidase (cytochrome c)	0.643	0.584	0.242	1.6e-14
UNIPROTKB|F1S9B6	495	OXA1L "Uncharacterized protein	0.620	0.492	0.259	1.7e-14

TAIR|locus:2014973 AT1G65080 [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 154/302 (50%), Positives = 212/302 (70%)

Query:    93 ESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIA 152
             E I  ++SSLPV A++ FL+ +H+FTG PWW II SSTVA+R+ALLPL++LQLKK++ I+
Sbjct:    69 EIIPTDDSSLPVLAVVDFLEGFHEFTGLPWWMIIASSTVAVRLALLPLLILQLKKLKTIS 128

Query:   153 EXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIR 212
             E             + K  +DQ S F +E RA GCPS LWF    ++Q+PCF + + SIR
Sbjct:   129 ELLPKLPMPIPETPTLKGSIDQFSHFLKESRAIGCPSFLWFFPYLSVQLPCFFLLMASIR 188

Query:   213 RMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272
             +MSLDGHPGFD GG+ WFQNL++ P G  G +FP+L+A  HY N+Q+SF  S++ +  GL
Sbjct:   189 KMSLDGHPGFDSGGVLWFQNLSDLPGGSFGPVFPILIATFHYINIQISFDTSTIRQTTGL 248

Query:   273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332
              GLL +YYK YL ++++PLFF+GY IPQGSLVYWVTNSS +I QQL+LKHP     LGL 
Sbjct:   249 TGLLMRYYKLYLEILSVPLFFVGYAIPQGSLVYWVTNSSVNIFQQLSLKHPTVGAKLGLL 308

Query:   333 DK-VVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPL 391
              +   P      E  +++   ++S +K+  +S++ LTP+EL++LSV+ LSKGDKE  I L
Sbjct:   309 SQGATPGMGHSMEISESVIKYVDSDSKEQTLSLQTLTPEELLSLSVQVLSKGDKETSIQL 368

Query:   392 LQ 393
             L+
Sbjct:   369 LR 370

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2100172 AT3G44370 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 150/289 (51%), Positives = 196/289 (67%)

Query:   107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEXXXXXXXXXXXXX 166
             +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++             
Sbjct:   123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query:   167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
             SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct:   183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query:   227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
               WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +    L AK YK++LNL
Sbjct:   243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTEL-AKAYKTFLNL 301

Query:   287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP-DKVVPAAARKPEE 345
             +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct:   302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query:   346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQ 393
              +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+
Sbjct:   362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLR 410

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

TAIR|locus:2174068 OXA1 "homolog of yeast oxidase assembly 1 (OXA1)" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 74/284 (26%), Positives = 133/284 (46%)

Query:    94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAE 153
             ++A  +S  P+ AL   +D  H FTGF WW  IV +T+ +R + +PL++ Q+K   ++A 
Sbjct:   124 TLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIKQMKDTTKLAL 183

Query:   154 XXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGC---PSLLWF--IASFAIQVPCFLVGV 208
                          +  + +D +++   +K+         +  F  +    IQ P F+   
Sbjct:   184 MRPRLESIREEMQN--KGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQGPLFICFF 241

Query:   209 TSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268
              +IR M+ +  P F  GG  WF +LT  P  +   I PV+  GL +  + +   A    +
Sbjct:   242 LAIRNMA-EKVPSFQTGGALWFTDLTT-PDSLY--ILPVI-TGLTFL-ITVECNAQEGME 295

Query:   269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328
              N + G +    + +  L+T+P+       PQ    YW+T++ FS++  L +K P  + M
Sbjct:   296 GNPMAGTVKTVCRVFA-LLTVPMTMS---FPQAIFCYWITSNLFSLMYGLVIKRPQVKKM 351

Query:   329 LGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKEL 372
             L +PD   P   ++P   D     L S  K++K   ++ T  ++
Sbjct:   352 LRIPDLPPPPPGQQPS-FD-----LFSALKKMKAMTQDHTQNQI 389

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0006461 "protein complex assembly" evidence=IMP

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IGI

ZFIN|ZDB-GENE-071004-49 oxa1l "oxidase (cytochrome c) assembly 1-like" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 72/255 (28%), Positives = 116/255 (45%)

Query:   100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVL---QLKKIQRIA-EXX 155
             +S PV  + + L+  H   G PWW  IV+ T+  R A+ P+IV    +  K+  +  E  
Sbjct:   153 NSTPVGLIQNLLEFMHVSIGLPWWGAIVAGTIVARCAVFPVIVKGQREAAKLNNVMPEMT 212

Query:   156 XXXXXXXXXXXSGKRF-----VDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTS 210
                        SG +F        + +F+++K     P    F+    +Q P FL    +
Sbjct:   213 KLTNRMNEAKQSGNKFEFSKAYTDLMMFQKKKDVN--P-FRGFLVPL-VQAPIFLSFFIA 268

Query:   211 IRRMSLDGHPGFDCGGIWWFQNLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKE 269
             +R+MS    P    GG+WWF +LT   P  +L    P+ + G     ++L  GA S G +
Sbjct:   269 LRKMSELPVPSLQTGGLWWFTDLTAADPFYIL----PIAVTGTMVAILEL--GAES-GVD 321

Query:   270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329
             N  L  +    K+   +M   +  L    P     YW+T++ FS+ Q   L+HPA R  L
Sbjct:   322 NPNLRAM----KTVFRIMPFVILPLTINFPTAVFTYWMTSNLFSLAQVAVLRHPAVRQKL 377

Query:   330 GLPDKVVPAAARKPE 344
              +P+++V   +  PE
Sbjct:   378 RIPERIVHPQSALPE 392

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2039134 OXA1L "AT2G46470" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 7.8e-17, P = 7.8e-17
 Identities = 76/282 (26%), Positives = 128/282 (45%)

Query:    94 SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLK------- 146
             +IA  +S+ PV AL   +D  H FTG  WW  I  +TV +R   +P+++ QLK       
Sbjct:   127 AIAAADSAFPVAALQHLIDAVHSFTGLNWWASIALTTVLIRGVTIPILLNQLKATYKLNV 186

Query:   147 ---KIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPC 203
                +++ + +              G+R + Q+ LF+        P     +    IQ P 
Sbjct:   187 LRPQLEELRQEMSTKAQDPEAMAEGQRRM-QL-LFKEHGVTPFTP-----LKGLIIQGPI 239

Query:   204 FLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGA 263
             F+    +IR M+ +  P F  GG  WF +LT         I P+L A      V+ +   
Sbjct:   240 FISFFFAIRNMA-EKVPSFKTGGTLWFTDLTTTDTTY---ILPLLTAVTFLIMVESNMQE 295

Query:   264 SSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
                G  N + G + K+ +  +  +++P+  +G  I +    YW+T++ F++V  L L+ P
Sbjct:   296 GLEG--NPVAGTMKKFSR-IIAFLSIPVL-IG--IEKALFCYWLTSNLFTLVYGLTLRRP 349

Query:   324 ASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVE 365
               R +L LPD VV ++ R+P     L  +   P  Q  ++ E
Sbjct:   350 DVRKLLNLPD-VVNSSTRQPSPSSPLPFSFAEPKDQSVVAQE 390

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|E7EVY0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 75/286 (26%), Positives = 119/286 (41%)

Query:    83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E S A  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:    98 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
             LIV   ++  RI                 K   D I  ++     A      G       
Sbjct:   158 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 217

Query:   194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
             I     Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L 
Sbjct:   218 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 268

Query:   254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
              T     +    LG E G+     ++ ++ + +M L    +  + P    +YW++++ FS
Sbjct:   269 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 326

Query:   314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQ 359
             +VQ   L+ PA RT+L +P +VV    + P     LE+  + P +Q
Sbjct:   327 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLESFKKGPLRQ 372

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q15070 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 73/278 (26%), Positives = 115/278 (41%)

Query:    83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E S A  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:    98 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 157

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
             LIV   ++  RI                 K   D I  ++     A      G       
Sbjct:   158 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 217

Query:   194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
             I     Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L 
Sbjct:   218 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 268

Query:   254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
              T     +    LG E G+     ++ ++ + +M L    +  + P    +YW++++ FS
Sbjct:   269 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 326

Query:   314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
             +VQ   L+ PA RT+L +P +VV    + P     LE+
Sbjct:   327 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 364

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=IMP

GO:0032780 "negative regulation of ATPase activity" evidence=IMP

GO:0051354 "negative regulation of oxidoreductase activity" evidence=IMP

GO:0009060 "aerobic respiration" evidence=NAS;IMP

GO:0005746 "mitochondrial respiratory chain" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0006461 "protein complex assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051262 "protein tetramerization" evidence=IDA

GO:0097177 "mitochondrial ribosome binding" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|J3KNA0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 73/278 (26%), Positives = 115/278 (41%)

Query:    83 ETVNLSERVIE-SIA--GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E S A  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:   158 ETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFP 217

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAA------GCPSLLWF 193
             LIV   ++  RI                 K   D I  ++     A      G       
Sbjct:   218 LIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPL 277

Query:   194 IASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLH 253
             I     Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L 
Sbjct:   278 ILPVT-QAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYILPLA 328

Query:   254 YTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFS 313
              T     +    LG E G+     ++ ++ + +M L    +  + P    +YW++++ FS
Sbjct:   329 VTATM--WAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFS 386

Query:   314 IVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLET 351
             +VQ   L+ PA RT+L +P +VV    + P     LE+
Sbjct:   387 LVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLES 424

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1585024 Oxa1l "oxidase (cytochrome c) assembly 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 65/268 (24%), Positives = 109/268 (40%)

Query:    81 PVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPL 140
             P + V  +     +  G  S  PV  + + L+  H   G PWW  I + TV  R  + PL
Sbjct:    94 PADVVQCATEQSFAELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPL 153

Query:   141 IVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPSL--LWFIASFA 198
             IV   ++  +I                 K   DQ   ++             + F     
Sbjct:   154 IVKGQREAAKIHNHMPEMQKFSARIREAKLSGDQAEFYKATIEMTHYQKKHDIKFFRPLI 213

Query:   199 I---QVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYT 255
             +   Q P F+    ++R M+    P    GG+WWFQ+LT           P+ +  L  T
Sbjct:   214 LPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSD--------PIYVLPLVVT 265

Query:   256 NVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIV 315
                  +G   LG E G+     +  ++ + +M L +  +  + P    +YW++++ FS+ 
Sbjct:   266 ATM--WGVLELGAETGMQSSDLQLMRNVIRVMPLAVLPVTIHFPSAVFMYWLSSNVFSLC 323

Query:   316 QQLALKHPASRTMLGLPDKVVPAAARKP 343
             Q   L+ PA RT L +P +VV   ++ P
Sbjct:   324 QVACLRFPAVRTALKIPQRVVHDPSKLP 351

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0009060 "aerobic respiration" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0032592 "integral to mitochondrial membrane" evidence=ISO

GO:0032780 "negative regulation of ATPase activity" evidence=ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0033615 "mitochondrial proton-transporting ATP synthase complex assembly" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0051354 "negative regulation of oxidoreductase activity" evidence=ISO

GO:0097031 "mitochondrial respiratory chain complex I biogenesis" evidence=ISO

GO:0097177 "mitochondrial ribosome binding" evidence=ISO

UNIPROTKB|F1S9B6 OXA1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 68/262 (25%), Positives = 109/262 (41%)

Query:    83 ETVNLSERVIE---SIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLP 139
             ET ++ +   E   S  G  S  PV  + + L+  H   G PWW  I + TV  R  + P
Sbjct:   157 ETADIVQAAAEQSFSELGLGSYTPVGLIQNLLEFMHVNLGLPWWGAIATCTVLARCLVFP 216

Query:   140 LIVLQLKKIQRIAEXXXXXXXXXXXXXSGKRFVDQISLFRREKRAAGCPS-----LLWFI 194
             LIV   ++  +I                 K   +    +R               L   +
Sbjct:   217 LIVKGQREAAKIHNHLPEIQKFSTRIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFKPL 276

Query:   195 ASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHY 254
                  Q P F+    ++R M+    P    GG+WWFQ+LT      L    P  +  L  
Sbjct:   277 ILPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLT------LSD--PTYILPLVV 328

Query:   255 TNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSI 314
             T     +G   LG E G+     ++ ++++ LM L +  +  + P    +YW +++ FS+
Sbjct:   329 TATM--WGVLELGAETGMQSSDLQWMRNFIRLMPLAVLPITIHFPSAVFMYWFSSNMFSL 386

Query:   315 VQQLALKHPASRTMLGLPDKVV 336
              Q L L+ PA RT+L +P +VV
Sbjct:   387 GQVLCLRIPAVRTVLKIPQRVV 408

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	5e-17
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	2e-10
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	2e-08

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 31/211 (14%)

Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL------SGKRFVDQI 175
           W   I+  T+ +R+ LLPL + Q K + ++ EL P +       +        ++   ++
Sbjct: 3   WGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKE-----IQEKYKDDPQKLQQEM 57

Query: 176 SLFRREKR---AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQN 232
               +E      AGC  +L       IQ+P F+    ++R M+       +  G  W ++
Sbjct: 58  MKLYKEHGVNPLAGCLPML-------IQLPIFIALYRALRNMA--ELRSLETAGFLWIKD 108

Query: 233 LTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLF 292
           L+         I P+L     +   +LS        +       +   K  + +M L   
Sbjct: 109 LSAPDPPYF--ILPILAGLTMFLQQKLSPSQDPPDLQQ------SAQMKIMMYIMPLIFL 160

Query: 293 FLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
           F     P G ++YW+ ++ FS+VQQL ++ P
Sbjct: 161 FFFLNFPAGLVLYWIVSNLFSLVQQLIIRKP 191

Length = 193

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 37/228 (16%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           L   L     F+G  W   I+  T+ +R+ + PL     + + ++ EL P++       +
Sbjct: 95  LFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKI-----KEI 149

Query: 167 SGKRFVDQISLFRREKRA----------AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSL 216
             K         ++E             AGC  LL       IQ+P F+     +R    
Sbjct: 150 QEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLL-------IQMPIFIALYYVLRSTVE 202

Query: 217 DGHPGFDCGGIWWFQNLT-EYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGL 275
                F    + W  +L+   P  +L  + P+L     +   +LS   +    ++     
Sbjct: 203 LRGAPF----LGWITDLSLPDPDYIL--LLPILAGVTMFLQQKLS-PRNLSTPQD----- 250

Query: 276 LAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
                K  + +M +   F  +  P G ++YW+ ++ FSI+QQ  L  P
Sbjct: 251 --PQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKP 296

Length = 314

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 43/212 (20%)

Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVD-------- 173
           W   I+  T+ +R+ LLPL + Q K ++++ EL P+L       +  +++ D        
Sbjct: 2   WGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKE-----IQ-EKYKDDPQKLQQE 55

Query: 174 QISLFRREKR--AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQ 231
            + L++ E      GC  LL       IQ+P F+     +RR     H  F      W Q
Sbjct: 56  MMKLYKEEGVNPLGGCLPLL-------IQMPIFIALYQVLRRSIELRHAPF-----LWIQ 103

Query: 232 NLTEY-PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLP 290
           +L+   P+ +L    P+LM    +   +LS        +           K  + +M + 
Sbjct: 104 DLSAPDPYYIL----PILMGVTMFLQQKLSPSGPP---DP-------AQQKIMMYIMPVM 149

Query: 291 LFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322
             F     P G ++YWV ++ F+I+QQL +  
Sbjct: 150 FLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.97
PRK02654	375	putative inner membrane protein translocase compon	99.95

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1.1e-44  Score=348.26  Aligned_cols=205  Identities=21%  Similarity=0.331  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc------ccHHHHHHH
Q 016206          104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG------KRFVDQISL  177 (393)
Q Consensus       104 v~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~------k~~~e~~~L  177 (393)
                      +.++.++|+++|.++|.|||++|+++|+++|++++|++++|+|+++||+++|||++++++|++++      +.++|++++
T Consensus        41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~L  120 (255)
T PRK02944         41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQL  120 (255)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999987643      235688899


Q ss_pred             HHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 016206          178 FRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNV  257 (393)
Q Consensus       178 ~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~  257 (393)
                      ||||    ||+|+.. .+|+++|+|||+++|+++|++.     ++.++||+|| ||+.+||   +++||++++++++++.
T Consensus       121 yk~~----gvnP~~g-~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~~  186 (255)
T PRK02944        121 FQKN----GVNPLAG-CLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQQ  186 (255)
T ss_pred             HHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHHH
Confidence            9998    6777754 4899999999999999999985     6788999999 9999999   8999999999999998


Q ss_pred             HHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHHhHhCC
Q 016206          258 QLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL  331 (393)
Q Consensus       258 ~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vRk~lgl  331 (393)
                      +.+....   +++      ...++.+++++|+.+++++.++|+|+++||++||+|+++|++++++|.+|+..+=
T Consensus       187 ~~~~~~~---~~~------~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~  251 (255)
T PRK02944        187 KLMMAGT---AGQ------NPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAG  251 (255)
T ss_pred             HhcccCC---CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcC
Confidence            8754321   111      1234667888999999999999999999999999999999999999999986653

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4.3e-44  Score=338.02  Aligned_cols=193  Identities=19%  Similarity=0.273  Sum_probs=168.4

Q ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--ccHHHHHHHHHHhchhCCCCchhH
Q 016206          115 HDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--KRFVDQISLFRREKRAAGCPSLLW  192 (393)
Q Consensus       115 H~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~--k~~~e~~~L~kk~~~~~Gc~~~~~  192 (393)
                      |..+|+|||++|+++|+++|++++|++++|+|+++||++++||++++++|++++  +.++|++++|||+    ||+|+..
T Consensus        24 ~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~inp~~~   99 (223)
T PRK00145         24 ISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----GVNPLGG   99 (223)
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----CCCchHH
Confidence            334689999999999999999999999999999999999999999999987765  3467899999998    6777754


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchh
Q 016206          193 FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL  272 (393)
Q Consensus       193 ~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~  272 (393)
                       .+|+++|+|+|+++|+++|+++     ++.++|++||+||+.+||   +++||++++++++++.+++.+.   +.   .
T Consensus       100 -~lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~---~~---~  164 (223)
T PRK00145        100 -CLPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKA---DS---S  164 (223)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCC---Ch---h
Confidence             4888999999999999999996     688899999999999999   8999999999999999876543   11   1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHHhHh
Q 016206          273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML  329 (393)
Q Consensus       273 ~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vRk~l  329 (393)
                         ..+.+|.+++++++.++++++++|+|+++||++||+|+++|++++|+...||..
T Consensus       165 ---~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~~  218 (223)
T PRK00145        165 ---QAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKKV  218 (223)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence               134566778888999999999999999999999999999999999988777643

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=5e-42  Score=317.66  Aligned_cols=188  Identities=30%  Similarity=0.494  Sum_probs=164.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--ccHHHHHHHHHHhchhCCCCchhHHHHHHH
Q 016206          121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--KRFVDQISLFRREKRAAGCPSLLWFIASFA  198 (393)
Q Consensus       121 pWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~--k~~~e~~~L~kk~~~~~Gc~~~~~~llp~L  198 (393)
                      +||++|+++|+++|++++|++++|+|+++||++++||++++++|++++  +.++|++++||||    ||++++. ++|++
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~~-~~~~l   76 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLKG-CLPPL   76 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHHH-HHHHH
Confidence            899999999999999999999999999999999999999999987654  3467888899987    8999865 47889


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCC-----CcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhh
Q 016206          199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP-----HGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLL  273 (393)
Q Consensus       199 iQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~D-----pg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~  273 (393)
                      +|+|+|+++|+++|+|+.  +|++.++|++||+||+.+|     |   +++||++++++++++.+++.+ ....+.+   
T Consensus        77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p---~~iLPil~~~~~~~~~~~~~~-~~~~~~~---  147 (198)
T PF02096_consen   77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLP---YFILPILAGASMFLNQELSMK-NSKQKSP---  147 (198)
T ss_pred             HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhH---HHHHHHHHHHHHHHHHHHHHh-ccccCCc---
Confidence            999999999999999986  7899999999999999999     7   899999999999999999865 2111111   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccH
Q 016206          274 GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP  323 (393)
Q Consensus       274 ~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p  323 (393)
                       ...+.+|.+++++++.+++++.++|+|+++||++||+|+++|++++|++
T Consensus       148 -~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~  196 (198)
T PF02096_consen  148 -QQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP  196 (198)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             1135566777788999999999999999999999999999999999875

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=1e-41  Score=312.41  Aligned_cols=179  Identities=26%  Similarity=0.438  Sum_probs=158.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHhchhCCCCchhHHHHHHH
Q 016206          121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA  198 (393)
Q Consensus       121 pWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~~~e~~~L~kk~~~~~Gc~~~~~~llp~L  198 (393)
                      +||++|+++|+++|++++|++++|+|+++||++++||++++++|+++++  .++|++++||||    ||+|++. .+|++
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~~-~lp~l   75 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLGG-CLPLL   75 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHHH-HHHHH
Confidence            7999999999999999999999999999999999999999999877654  367889999998    7888765 47889


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhhhHHHH
Q 016206          199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK  278 (393)
Q Consensus       199 iQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k  278 (393)
                      +|+|+|+++|+++|++     +++.++|++||+||+.+||   +++||++++++++++.+++....   . +      .+
T Consensus        76 iQ~Pif~~~~~~lr~~-----~~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~---~-~------~~  137 (181)
T TIGR03592        76 IQMPIFIALYQVLRRS-----IELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGP---P-D------PA  137 (181)
T ss_pred             HHHHHHHHHHHHHHhh-----HHhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCC---C-C------HH
Confidence            9999999999999997     4789999999999999999   89999999999999999875531   1 1      12


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHcc
Q 016206          279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH  322 (393)
Q Consensus       279 ~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~  322 (393)
                      .+|.+++++|+.+++++.++|+|+++||++||+|+++|++++|.
T Consensus       138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            35567778999999999999999999999999999999999873

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=2.2e-41  Score=325.64  Aligned_cols=199  Identities=20%  Similarity=0.294  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCccc-------HH
Q 016206          104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------FV  172 (393)
Q Consensus       104 v~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~----~~km~~l~Pel~~i~~k~~~~k~-------~~  172 (393)
                      +.++.++++++|+.+|.|||++|+++|+++|++++|++++|+|+    ++||+++|||++++++|++++++       ++
T Consensus        42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~  121 (256)
T PRK01622         42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK  121 (256)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence            67788999999999999999999999999999999999999999    88999999999999998765332       45


Q ss_pred             HHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHH
Q 016206          173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL  252 (393)
Q Consensus       173 e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l  252 (393)
                      |++++|||+    ||+|+....+|+++|+|||+++|+++|++     |++.++|++|| ||+.+|     +|||++++++
T Consensus       122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~  186 (256)
T PRK01622        122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT  186 (256)
T ss_pred             HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence            677888887    67777634599999999999999999987     47889999999 999998     6999999999


Q ss_pred             HHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHH
Q 016206          253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPA  324 (393)
Q Consensus       253 ~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~  324 (393)
                      ++++.+++...    ..++.+   .+.+|.|++++|+.+++++.++|+|+++||++||+|+++|++++|+..
T Consensus       187 ~~~~~~~~~~~----~~~~~q---~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~  251 (256)
T PRK01622        187 YFIQMKVSQSN----GTSPEQ---VQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVM  251 (256)
T ss_pred             HHHHHHHcCCC----CCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999876532    111111   345677788899999999999999999999999999999999998653

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=2e-41  Score=332.55  Aligned_cols=212  Identities=20%  Similarity=0.253  Sum_probs=175.8

Q ss_pred             cHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCcc-------cH
Q 016206          103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGK-------RF  171 (393)
Q Consensus       103 Pv~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~----~~km~~l~Pel~~i~~k~~~~k-------~~  171 (393)
                      -+.++.++++++|..+|++||++|+++|+++|++++|++++|+++    ++||++++||+++|++|+++++       .+
T Consensus        41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q  120 (307)
T PRK02463         41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ  120 (307)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence            467788999999999999999999999999999999999998875    6899999999999999876542       25


Q ss_pred             HHHHHHHHHhchhCCCCchhH-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHH
Q 016206          172 VDQISLFRREKRAAGCPSLLW-FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMA  250 (393)
Q Consensus       172 ~e~~~L~kk~~~~~Gc~~~~~-~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~  250 (393)
                      +|++++|||++    ++|+.. ..+|+|+|+|||+++|+++|.     +|++.+++|+|| ||+.+     +++||++++
T Consensus       121 ~em~~lyke~g----inp~~~~GCLP~LIQ~PIf~aly~ai~~-----~~~l~~~~flwi-dL~~p-----~~iLpii~~  185 (307)
T PRK02463        121 TELMAAQRENG----ISMLGGIGCLPLLIQMPFFSALYFAAQY-----TKGVSTSTFLGI-DLGSP-----SLVLTAIIG  185 (307)
T ss_pred             HHHHHHHHHcC----CCCccccchHHHHHHHHHHHHHHHHHhc-----chhhccCCeeee-ecCch-----hHHHHHHHH
Confidence            67889999985    333221 129999999999999999995     378999999999 99865     479999999


Q ss_pred             HHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHc---cHHHHh
Q 016206          251 GLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPASRT  327 (393)
Q Consensus       251 ~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr---~p~vRk  327 (393)
                      ++++++.+++....  .++      ..+.||.|++++|++++++++++|+|+.+||++||+|+++|+++++   +|++|+
T Consensus       186 v~~~~q~~~~~~~~--~~~------q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk~~~  257 (307)
T PRK02463        186 VLYFFQSWLSMMGV--PEE------QREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPRLRK  257 (307)
T ss_pred             HHHHHHHHHhccCC--Chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999988764321  111      1356778899999999999999999999999999999999999976   788887


Q ss_pred             HhCCCCCCCC
Q 016206          328 MLGLPDKVVP  337 (393)
Q Consensus       328 ~lglp~~~~~  337 (393)
                      ...=..+.+|
T Consensus       258 ~i~~e~~~~p  267 (307)
T PRK02463        258 QIAEEFAKNP  267 (307)
T ss_pred             HHHHHhhcCC
Confidence            7654444444

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=5.9e-41  Score=349.78  Aligned_cols=204  Identities=20%  Similarity=0.326  Sum_probs=174.3

Q ss_pred             CCCCccc--HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHH
Q 016206           97 GEESSLP--VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFV  172 (393)
Q Consensus        97 ~~~~~~P--v~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~~~  172 (393)
                      .++||..  +.++.++|+++|.++| |||++|+++|+++|++++|++++|.|+++||++++|+|+++++|+++++  .++
T Consensus       297 ~~~G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~  375 (521)
T PRK01318        297 VDYGWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQ  375 (521)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHH
Confidence            3778864  7899999999999999 9999999999999999999999999999999999999999999877664  578


Q ss_pred             HHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc-ccccCCCCCCcchhHHH-----H
Q 016206          173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF-----P  246 (393)
Q Consensus       173 e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~L-Wf~DLt~~Dpg~~~~IL-----P  246 (393)
                      |+|++|||++    |+|+.. .+|+|+|+||||++|+++|++.     .+..++|+ ||+||+.+||   ++||     |
T Consensus       376 e~~~LYKk~~----vnPl~g-clp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~lP  442 (521)
T PRK01318        376 EMMELYKKEK----VNPLGG-CLPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLLP  442 (521)
T ss_pred             HHHHHHHHcC----CCccch-hHHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHHH
Confidence            9999999995    444332 2999999999999999999986     46677887 9999999999   7888     9


Q ss_pred             HHHHHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHH
Q 016206          247 VLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASR  326 (393)
Q Consensus       247 il~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vR  326 (393)
                      ++++++++++.+++...  .   .    .   .+++++.+||++++++++++|+|+++||++||+++++|++++++...+
T Consensus       443 il~~~~~~~~~~l~~~~--~---~----~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~  510 (521)
T PRK01318        443 ILMGITMFLQQKLNPTP--T---D----P---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK  510 (521)
T ss_pred             HHHHHHHHHHHHhcCCC--C---C----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999999999887432  1   1    1   112344568988888999999999999999999999999999865433

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.9e-39  Score=342.19  Aligned_cols=199  Identities=20%  Similarity=0.360  Sum_probs=165.2

Q ss_pred             HHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHhc--
Q 016206          107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREK--  182 (393)
Q Consensus       107 i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~~~e~~~L~kk~~--  182 (393)
                      +.++++++|..+| |||++|+++|+++|++++|++++|.|+++||+++||+|++|++|+++++  .++|+|++|||++  
T Consensus       562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVN  640 (795)
T PRK01001        562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVN  640 (795)
T ss_pred             HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCC
Confidence            4566688999999 9999999999999999999999999999999999999999999887664  5789999999995  


Q ss_pred             hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc--ccccCCCCCCcc-----------hhHHHHHHH
Q 016206          183 RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLM  249 (393)
Q Consensus       183 ~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~L--Wf~DLt~~Dpg~-----------~~~ILPil~  249 (393)
                      +..||       +|+|+|+|||+++|+++|++.     ++..++|+  |++||+.+||.+           .++|||+++
T Consensus       641 Pl~GC-------LPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILm  708 (795)
T PRK01001        641 PITGC-------LPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILL  708 (795)
T ss_pred             chHHH-------HHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHH
Confidence            44555       999999999999999999986     45556676  999999999832           134999999


Q ss_pred             HHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccH
Q 016206          250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP  323 (393)
Q Consensus       250 ~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p  323 (393)
                      +++++++++++..... +..++.    ++..+.|+.+||+++++++.++|+|+++||++||+++++|++++++.
T Consensus       709 gvtmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~  777 (795)
T PRK01001        709 GVVMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI  777 (795)
T ss_pred             HHHHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            9999999998754321 111111    12233455678998888999999999999999999999999999853

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.4e-38  Score=311.72  Aligned_cols=217  Identities=20%  Similarity=0.265  Sum_probs=169.5

Q ss_pred             CCCcccHHHHHHHHHHHh-----hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--c
Q 016206           98 EESSLPVRALISFLDTYH-----DFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--R  170 (393)
Q Consensus        98 ~~~~~Pv~~i~~lLe~iH-----~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~  170 (393)
                      |++|+|++.+.++++++|     ..+|+|||++|+++|+++|++++|++++|.|+++||++++|+++++++|+++++  .
T Consensus         3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~   82 (304)
T PRK03449          3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM   82 (304)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence            678999999999988765     458999999999999999999999999999999999999999999999877653  4


Q ss_pred             HHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC----CCCc----------------ccccc--
Q 016206          171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIW--  228 (393)
Q Consensus       171 ~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~----p~l~----------------~~g~L--  228 (393)
                      ++|++++|||+    ||+|+.. .+|+|+|+|||+++|++||+|+....    ++++                .++|+  
T Consensus        83 ~~e~~~Lyk~~----gvnP~~g-clP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~  157 (304)
T PRK03449         83 ALEMQKLQKEH----GFNPILG-CLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA  157 (304)
T ss_pred             HHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence            67899999998    6766643 49999999999999999999954211    1110                01344  


Q ss_pred             ---------ccc----------cCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHH
Q 016206          229 ---------WFQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL  289 (393)
Q Consensus       229 ---------Wf~----------DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~l  289 (393)
                               |+.          |++..|......++|++++++++++.+++.......  ++....+..++|.|++++|+
T Consensus       158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~  235 (304)
T PRK03449        158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL  235 (304)
T ss_pred             hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence                     332          555555322235688999999999998876542211  11111223344678899999


Q ss_pred             HHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHc
Q 016206          290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK  321 (393)
Q Consensus       290 p~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr  321 (393)
                      ++++++.++|+|+.|||++||+|+++|+++++
T Consensus       236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~  267 (304)
T PRK03449        236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVF  267 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999986

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.2e-37  Score=306.06  Aligned_cols=205  Identities=22%  Similarity=0.397  Sum_probs=176.9

Q ss_pred             CcccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-Ccc--cHHHHHH
Q 016206          100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGK--RFVDQIS  176 (393)
Q Consensus       100 ~~~Pv~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~-~~k--~~~e~~~  176 (393)
                      .|++...+..+++++|.+.|++||++|+++|+++|++++|++.++.++++||+++||+++++++|++ +++  .++|+|+
T Consensus        88 f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~e~~~  167 (314)
T COG0706          88 FWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEMMK  167 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455555788999999999999999999999999999999999999999999999999999999888 453  3679999


Q ss_pred             HHHHhc--hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc-ccccCCCCCCcchhH--HHHHHHHH
Q 016206          177 LFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGS--IFPVLMAG  251 (393)
Q Consensus       177 L~kk~~--~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~L-Wf~DLt~~Dpg~~~~--ILPil~~~  251 (393)
                      +||||+  +..||       +|+++|+|+|+++|++++++.     .+..++|+ |++||+.+||   ++  ++|+++++
T Consensus       168 Lyk~~~vnPl~gc-------lP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp---~~~~~~pii~gv  232 (314)
T COG0706         168 LYKKHKVNPLAGC-------LPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDP---DYILLLPILAGV  232 (314)
T ss_pred             HHHHhCCCchhhH-------HHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCC---chhhHHHHHHHH
Confidence            999996  45677       999999999999999999986     44455555 9999999999   55  55999999


Q ss_pred             HHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHHh
Q 016206          252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT  327 (393)
Q Consensus       252 l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vRk  327 (393)
                      +++.+.+++..... .+    +   .+.+++++.+||+.++++++++|+||.+||++||+|+++|+++++++..++
T Consensus       233 ~~f~q~~ls~~~~~-~~----q---~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~  300 (314)
T COG0706         233 TMFLQQKLSPRNLS-TP----Q---DPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK  300 (314)
T ss_pred             HHHHHHHhccccCC-cc----c---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence            99999998866422 11    1   234567888999999999999999999999999999999999999998876

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=8.9e-37  Score=301.60  Aligned_cols=214  Identities=21%  Similarity=0.342  Sum_probs=163.4

Q ss_pred             CcccHHHHH-HHHHHHhh--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-
Q 016206          100 SSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK-  169 (393)
Q Consensus       100 ~~~Pv~~i~-~lLe~iH~--------~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k-  169 (393)
                      ..+|+.++. .++.++|.        .+|+|||++|+++|+++|++++|++++|+|+++||++++||+++|++|+++++ 
T Consensus        11 i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~~~   90 (329)
T PRK01315         11 IMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRE   90 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhHHH
Confidence            357766543 44455553        47899999999999999999999999999999999999999999999877653 


Q ss_pred             -cHHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCC----------CCCCccccccccccCCCC--
Q 016206          170 -RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY--  236 (393)
Q Consensus       170 -~~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~----------~p~l~~~g~LWf~DLt~~--  236 (393)
                       .++|++++|||+    ||+|+.. .+|+|+|+|||+++|++||+++...          .+++..+.++|+ +|+..  
T Consensus        91 ~~~~e~~~Lykk~----ginp~~g-clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~f~  164 (329)
T PRK01315         91 RMSQEMMKLYKET----GTNPLSS-CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAATFL  164 (329)
T ss_pred             HHHHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccccc
Confidence             467899999998    6777654 4899999999999999999876421          234555666665 33322  


Q ss_pred             --------CCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 016206          237 --------PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVT  308 (393)
Q Consensus       237 --------Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWit  308 (393)
                              |....+.|||+++++++|++......+...+ ++ ..+++.+.+|.|+++||+++++++.++|+|+.+||++
T Consensus       165 ~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~-~~-~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW~~  242 (329)
T PRK01315        165 QALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPP-EA-KTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLT  242 (329)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    2112346899999999998865433322111 11 1123456677889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHc
Q 016206          309 NSSFSIVQQLALK  321 (393)
Q Consensus       309 S~~fsl~Q~~~lr  321 (393)
                      ||+|+++|++++.
T Consensus       243 snl~si~Qq~~v~  255 (329)
T PRK01315        243 SNVWTMGQQFYVI  255 (329)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=7.3e-37  Score=304.63  Aligned_cols=208  Identities=10%  Similarity=0.147  Sum_probs=162.0

Q ss_pred             HHHHHHHHHH------hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--------cc
Q 016206          105 RALISFLDTY------HDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--------KR  170 (393)
Q Consensus       105 ~~i~~lLe~i------H~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~--------k~  170 (393)
                      .++.+++.++      |...|++||++|+++|+++|++++|++++|.++++||+++|||++++++|++++        +.
T Consensus       110 ~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k~  189 (357)
T PRK02201        110 YPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRK  189 (357)
T ss_pred             HHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHH
Confidence            3444555554      467899999999999999999999999999999999999999999999987654        23


Q ss_pred             HHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCC------cchhHH
Q 016206          171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVLGSI  244 (393)
Q Consensus       171 ~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dp------g~~~~I  244 (393)
                      ++|++++|||+    ||+|+.. .+|+|+|+|||+++|+++|.+.     ++..+.++|+ ||+.+|+      .+.+.+
T Consensus       190 q~e~~~Lykk~----ginP~~g-clP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~~l~  258 (357)
T PRK02201        190 QQEIQELYKKH----NISPFSP-FVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWIYLP  258 (357)
T ss_pred             HHHHHHHHHHc----CCCcHHH-HHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccchHHH
Confidence            57889999998    6766643 4999999999999999999885     6777889999 9999883      122455


Q ss_pred             HHHHHHHHHHHHHHHhc----CcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHH
Q 016206          245 FPVLMAGLHYTNVQLSF----GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLAL  320 (393)
Q Consensus       245 LPil~~~l~~l~~~~~~----~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~l  320 (393)
                      ++++++++++++..+..    ++.+....+..+.+..+.++.|+.+||+.+++++.++|+|+.|||++||+|+++|++++
T Consensus       259 l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i  338 (357)
T PRK02201        259 ILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGI  338 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777765543    21110000111122345567788899999999999999999999999999999999999


Q ss_pred             ccH
Q 016206          321 KHP  323 (393)
Q Consensus       321 r~p  323 (393)
                      ++-
T Consensus       339 ~~~  341 (357)
T PRK02201        339 HYF  341 (357)
T ss_pred             HHH
Confidence            864

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=1.8e-34  Score=292.65  Aligned_cols=224  Identities=19%  Similarity=0.263  Sum_probs=160.9

Q ss_pred             CcccHHHHHHHHHH-Hhhhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-----
Q 016206          100 SSLPVRALISFLDT-YHDFT----GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK-----  169 (393)
Q Consensus       100 ~~~Pv~~i~~lLe~-iH~~t----GlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k-----  169 (393)
                      ..+|++.+.+++.+ +++..    |+|||++|+++|++||++++|++++|.|+++||++++|++++|++++++++     
T Consensus         5 ~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e~~   84 (429)
T PRK00247          5 FIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASI   84 (429)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHHHH
Confidence            35788777766553 45333    689999999999999999999999999999999999999999999876543     


Q ss_pred             --cHHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc-----------------------
Q 016206          170 --RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC-----------------------  224 (393)
Q Consensus       170 --~~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~-----------------------  224 (393)
                        .++|++++||++    ||+|+. ..+|+|+|+|||+++|++||+|+. +.+|+.+                       
T Consensus        85 ~~~qqe~~~LyKe~----ginP~~-gcLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~f  158 (429)
T PRK00247         85 RELQQKQKDLNKEY----GYNPLA-GCVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGRVF  158 (429)
T ss_pred             HHHHHHHHHHHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhcccc
Confidence              246788889988    666664 349999999999999999999983 3344332                       


Q ss_pred             ------------ccccccccCCCCCCcchhHHHHHHHH--HHHHHHHHHhcCcccC--CccchhhhHHHHHHHHHHHHHH
Q 016206          225 ------------GGIWWFQNLTEYPHGVLGSIFPVLMA--GLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNLMT  288 (393)
Q Consensus       225 ------------~g~LWf~DLt~~Dpg~~~~ILPil~~--~l~~l~~~~~~~~~~~--~~~~g~~~~~~k~~k~~l~i~~  288 (393)
                                  ++++|+ +.+.+|.  .+++||++++  ++++++..++...+..  ..+++....+.|+|..|++++|
T Consensus       159 GvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~P  235 (429)
T PRK00247        159 NVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAP  235 (429)
T ss_pred             CCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhH
Confidence                        223333 2333442  2478885544  4455676666543211  1223323345677777788899


Q ss_pred             HHHHHHhhh--hhhHhHHHHHHhhHHHHHHHHHHccHHHHhHhCCCC
Q 016206          289 LPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD  333 (393)
Q Consensus       289 lp~~~~~~~--~Paal~LYWitS~~fsl~Q~~~lr~p~vRk~lglp~  333 (393)
                      +++++++++  ||+||+|||++||+|+++|++++. ..++++..+++
T Consensus       236 im~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~-~~l~~~~P~~~  281 (429)
T PRK00247        236 IFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY-LILERKYPLTD  281 (429)
T ss_pred             HHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCCCc
Confidence            888876665  799999999999999999999765 22444444433

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-31  Score=269.57  Aligned_cols=220  Identities=28%  Similarity=0.449  Sum_probs=187.9

Q ss_pred             hCCCCcccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------
Q 016206           96 AGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK------  169 (393)
Q Consensus        96 ~~~~~~~Pv~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k------  169 (393)
                      ....+|.|+..+|+.|+.+|+++|+|||++|+.+|+.+|..++|+.++++|+.+|++++.|+++++.++....+      
T Consensus        76 ~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~  155 (372)
T KOG1239|consen   76 LALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNAL  155 (372)
T ss_pred             HHhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccch
Confidence            35778999999999999999999999999999999999999999999999999999999999998876533211      


Q ss_pred             --cHHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHH
Q 016206          170 --RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPV  247 (393)
Q Consensus       170 --~~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPi  247 (393)
                        .++|+.+++++|    |+++ +...+| ++|.|+|+++|.+||.|+ .+++++.++|.+||+||+.+||   ++++|+
T Consensus       156 ~~~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~  225 (372)
T KOG1239|consen  156 LSWQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPG  225 (372)
T ss_pred             HHHHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHH
Confidence              134667777777    7876 555454 999999999999999999 8999999999999999999999   899999


Q ss_pred             HHHHHHHHHHHHhcCcccCCccchhhh-HHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHH
Q 016206          248 LMAGLHYTNVQLSFGASSLGKENGLLG-LLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASR  326 (393)
Q Consensus       248 l~~~l~~l~~~~~~~~~~~~~~~g~~~-~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vR  326 (393)
                      ++++++..+++.+...       |..+ .+...|+.+..++++..+.++.++|.|+++||+    |+++|..++|. .+|
T Consensus       226 it~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr  293 (372)
T KOG1239|consen  226 ITLATLTLFIELGAET-------GLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVR  293 (372)
T ss_pred             HHHHHHHHHHHHHHHh-------hhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHH
Confidence            9999999999886543       2211 223345566666677766677899999999999    99999999999 999


Q ss_pred             hHhCCCCCCCC
Q 016206          327 TMLGLPDKVVP  337 (393)
Q Consensus       327 k~lglp~~~~~  337 (393)
                      +.+|+|+.+++
T Consensus       294 ~~l~~~~~~~~  304 (372)
T KOG1239|consen  294 KKLGIPDVPSI  304 (372)
T ss_pred             HhcCCCCCCCC
Confidence            99999999886

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=99.95  E-value=5.1e-27  Score=228.92  Aligned_cols=109  Identities=18%  Similarity=0.269  Sum_probs=95.6

Q ss_pred             CCCcccH--HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCCCCCCc--c
Q 016206           98 EESSLPV--RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSG--K  169 (393)
Q Consensus        98 ~~~~~Pv--~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~----~i~~k~~~~--k  169 (393)
                      |+||+-.  .++..+++++|..+| +||++|+++|+++|++++|++++|+|+++||+.+||+|+    +|++||+++  +
T Consensus         2 dfG~g~i~~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk   80 (375)
T PRK02654          2 DFGIGFISNNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQK   80 (375)
T ss_pred             CcchHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHH
Confidence            5566554  467889999999999 999999999999999999999999999999999999996    588877765  3


Q ss_pred             cHHHHHHHHHHhc-hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 016206          170 RFVDQISLFRREK-RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRM  214 (393)
Q Consensus       170 ~~~e~~~L~kk~~-~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~m  214 (393)
                      .++|++++|||++ +..||       +|+++|+|||+++|++||..
T Consensus        81 ~QqEmmkLYKE~GNPlaGC-------LP~LIQmPIF~aLY~~LR~s  119 (375)
T PRK02654         81 QQEEMGKLMKEFGNPLAGC-------LPLLVQMPILFALFATLRGS  119 (375)
T ss_pred             HHHHHHHHHHHcCCChhhH-------HHHHHHHHHHHHHHHHHHhC
Confidence            5789999999996 44677       99999999999999999984

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 106/311 (34%)

Query: 100 SSLPVRALISF-LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRL 158
           + + +   +S+ +    DF  F W  +   ++    + +L  ++ Q+           R 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDP-----NWTSRS 217

Query: 159 PPPFPPPLSGKRFVDQISLFRREKRAAGCPSLL--------WFIASFAIQVPCFLVGVTS 210
                  L       ++    + K    C  LL            +F +   C ++ +T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLS--CKIL-LTT 272

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKEN 270
             R                F+ +T++            ++    T++ L   + +L  + 
Sbjct: 273 --R----------------FKQVTDF------------LSAATTTHISLDHHSMTLTPDE 302

Query: 271 GLLGLLAKYYKSYLNLMT--LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK-HPASRT 327
               LL KY    L+     LP         +                   L  +P   +
Sbjct: 303 VK-SLLLKY----LDCRPQDLP--------RE------------------VLTTNPRRLS 331

Query: 328 MLGLPDKVVPAAARKPEEIDTLETTLESPAKQL----KISVENLTPKEL----IALSVKF 379
           ++              + + T +        +L    + S+  L P E       LSV F
Sbjct: 332 IIA---------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F 381

Query: 380 LSKGDKERPIP 390
                    IP
Sbjct: 382 ----PPSAHIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00